Query psy17125
Match_columns 1281
No_of_seqs 549 out of 4369
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 22:31:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0060 IleS Isoleucyl-tRNA sy 100.0 2E-153 3E-158 1413.9 58.6 735 6-1038 35-798 (933)
2 PLN02843 isoleucyl-tRNA synthe 100.0 4E-143 1E-147 1380.4 66.5 738 18-1037 31-817 (974)
3 PRK13804 ileS isoleucyl-tRNA s 100.0 7E-143 1E-147 1379.8 64.9 744 7-1036 42-823 (961)
4 PRK05743 ileS isoleucyl-tRNA s 100.0 3E-142 6E-147 1372.7 62.2 731 7-1037 37-786 (912)
5 KOG0433|consensus 100.0 8E-140 2E-144 1209.1 57.8 726 7-1019 47-798 (937)
6 COG0525 ValS Valyl-tRNA synthe 100.0 2E-140 4E-145 1281.0 54.2 657 19-1037 33-713 (877)
7 PLN02882 aminoacyl-tRNA ligase 100.0 4E-137 8E-142 1336.4 63.4 734 16-1037 35-820 (1159)
8 PTZ00427 isoleucine-tRNA ligas 100.0 1E-136 3E-141 1324.3 62.9 736 16-1037 99-946 (1205)
9 PRK06039 ileS isoleucyl-tRNA s 100.0 3E-135 6E-140 1317.6 62.3 709 16-1037 38-789 (975)
10 TIGR00392 ileS isoleucyl-tRNA 100.0 2E-133 4E-138 1297.0 64.5 735 7-1037 24-808 (861)
11 PLN02381 valyl-tRNA synthetase 100.0 4E-132 8E-137 1284.0 55.2 720 17-1037 126-892 (1066)
12 PTZ00419 valyl-tRNA synthetase 100.0 7E-130 2E-134 1273.3 53.5 715 17-1036 58-822 (995)
13 PRK05729 valS valyl-tRNA synth 100.0 3E-128 7E-133 1245.2 58.1 651 18-1036 35-709 (874)
14 PRK14900 valS valyl-tRNA synth 100.0 1E-127 3E-132 1244.8 53.5 661 17-1036 46-735 (1052)
15 TIGR00422 valS valyl-tRNA synt 100.0 8E-127 2E-131 1233.8 58.7 661 17-1037 31-715 (861)
16 PLN02943 aminoacyl-tRNA ligase 100.0 1E-126 3E-131 1227.7 55.3 657 17-1036 86-785 (958)
17 KOG0432|consensus 100.0 9E-126 2E-130 1115.8 48.5 707 18-1033 74-823 (995)
18 PRK13208 valS valyl-tRNA synth 100.0 1E-124 2E-129 1205.7 56.8 684 17-1057 36-744 (800)
19 PLN02959 aminoacyl-tRNA ligase 100.0 1E-120 2E-125 1181.1 57.7 732 18-1036 44-893 (1084)
20 PF00133 tRNA-synt_1: tRNA syn 100.0 7E-121 2E-125 1133.3 38.2 571 5-883 9-601 (601)
21 PLN02563 aminoacyl-tRNA ligase 100.0 1E-119 3E-124 1147.7 44.4 697 4-1059 82-913 (963)
22 TIGR00396 leuS_bact leucyl-tRN 100.0 8E-119 2E-123 1142.8 46.1 694 4-1058 3-797 (842)
23 TIGR00395 leuS_arch leucyl-tRN 100.0 3E-117 7E-122 1143.2 56.8 724 17-1037 23-792 (938)
24 PRK12300 leuS leucyl-tRNA synt 100.0 1E-115 2E-120 1124.4 55.1 664 34-1037 1-746 (897)
25 PRK00390 leuS leucyl-tRNA synt 100.0 3E-115 7E-120 1108.8 48.4 690 3-1058 6-760 (805)
26 KOG0434|consensus 100.0 3E-114 6E-119 984.4 46.4 723 12-1038 31-810 (1070)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 6E-106 1E-110 985.9 38.0 704 5-1062 8-774 (814)
28 KOG0435|consensus 100.0 2E-102 5E-107 891.3 33.3 678 16-1057 55-817 (876)
29 KOG0437|consensus 100.0 1.1E-83 2.4E-88 739.9 31.1 753 16-1037 41-884 (1080)
30 PRK12268 methionyl-tRNA synthe 100.0 2.2E-74 4.7E-79 717.2 41.9 329 625-1018 172-510 (556)
31 PLN02610 probable methionyl-tR 100.0 1.8E-72 3.9E-77 707.9 41.6 495 16-1019 14-533 (801)
32 TIGR00398 metG methionyl-tRNA 100.0 3.4E-72 7.3E-77 693.7 41.8 323 623-1019 165-504 (530)
33 COG0143 MetG Methionyl-tRNA sy 100.0 2.1E-71 4.5E-76 663.2 41.9 494 17-1019 3-513 (558)
34 PRK12267 methionyl-tRNA synthe 100.0 1.6E-71 3.5E-76 699.7 42.3 311 626-1019 145-479 (648)
35 PRK00133 metG methionyl-tRNA s 100.0 4.9E-71 1.1E-75 695.5 42.0 495 19-1019 2-504 (673)
36 cd00817 ValRS_core catalytic c 100.0 2.8E-71 6E-76 654.1 33.2 362 19-882 1-382 (382)
37 PLN02224 methionine-tRNA ligas 100.0 9.2E-70 2E-74 664.9 42.4 321 630-1019 214-547 (616)
38 PRK11893 methionyl-tRNA synthe 100.0 2.7E-68 6E-73 658.4 41.9 312 625-1018 142-476 (511)
39 cd00818 IleRS_core catalytic c 100.0 9.3E-63 2E-67 572.3 30.5 177 639-882 150-338 (338)
40 KOG0436|consensus 100.0 4E-61 8.7E-66 526.0 32.7 352 630-1059 190-560 (578)
41 PF09334 tRNA-synt_1g: tRNA sy 100.0 7.6E-56 1.7E-60 521.3 20.1 386 21-905 1-391 (391)
42 cd00668 Ile_Leu_Val_MetRS_core 100.0 6.5E-54 1.4E-58 495.9 27.6 133 20-153 1-136 (312)
43 cd00814 MetRS_core catalytic c 100.0 3.1E-51 6.6E-56 474.0 26.0 132 20-164 1-132 (319)
44 cd00812 LeuRS_core catalytic c 100.0 6.7E-48 1.4E-52 444.4 22.6 126 20-156 1-126 (314)
45 PLN02843 isoleucyl-tRNA synthe 100.0 4.7E-48 1E-52 499.3 18.7 159 1107-1266 364-526 (974)
46 PTZ00427 isoleucine-tRNA ligas 100.0 2.6E-47 5.7E-52 494.1 17.7 168 1095-1263 443-655 (1205)
47 PLN02882 aminoacyl-tRNA ligase 100.0 1.2E-46 2.7E-51 490.5 17.5 157 1106-1263 361-550 (1159)
48 COG0525 ValS Valyl-tRNA synthe 100.0 4.2E-46 9.1E-51 455.4 11.8 219 1039-1263 220-462 (877)
49 KOG1247|consensus 100.0 2.8E-44 6.2E-49 393.2 21.4 486 16-1019 11-521 (567)
50 PRK06039 ileS isoleucyl-tRNA s 100.0 2.7E-44 5.8E-49 467.7 17.3 136 1095-1231 324-466 (975)
51 PLN02959 aminoacyl-tRNA ligase 100.0 2.8E-43 6E-48 458.5 20.6 175 349-570 228-411 (1084)
52 COG0060 IleS Isoleucyl-tRNA sy 100.0 6.1E-42 1.3E-46 424.4 10.7 181 1085-1266 318-515 (933)
53 KOG0433|consensus 100.0 4.8E-42 1E-46 398.5 7.9 192 1071-1268 323-528 (937)
54 TIGR00395 leuS_arch leucyl-tRN 100.0 7.7E-40 1.7E-44 423.9 20.2 164 349-570 156-321 (938)
55 PLN02381 valyl-tRNA synthetase 100.0 7.8E-40 1.7E-44 424.8 10.6 200 1056-1262 351-591 (1066)
56 KOG0432|consensus 100.0 2E-39 4.4E-44 384.7 6.1 193 1069-1263 304-530 (995)
57 PRK05743 ileS isoleucyl-tRNA s 100.0 2.9E-38 6.2E-43 408.3 11.6 197 1057-1264 296-509 (912)
58 PRK13804 ileS isoleucyl-tRNA s 100.0 4.6E-38 1E-42 406.9 11.3 179 1072-1256 329-536 (961)
59 PRK00260 cysS cysteinyl-tRNA s 100.0 1.5E-35 3.2E-40 357.7 30.4 156 766-967 219-375 (463)
60 PRK05729 valS valyl-tRNA synth 100.0 1E-36 2.2E-41 394.8 11.8 213 1040-1262 224-456 (874)
61 PTZ00419 valyl-tRNA synthetase 100.0 2E-36 4.4E-41 396.0 10.8 215 1040-1261 266-520 (995)
62 PRK14900 valS valyl-tRNA synth 100.0 2.3E-36 4.9E-41 393.6 9.8 200 1055-1262 255-474 (1052)
63 TIGR00422 valS valyl-tRNA synt 100.0 2.8E-35 6.1E-40 381.8 11.6 199 1056-1263 240-462 (861)
64 PF00133 tRNA-synt_1: tRNA syn 100.0 1.5E-35 3.3E-40 369.3 7.2 197 1056-1263 260-497 (601)
65 PLN02943 aminoacyl-tRNA ligase 100.0 6.3E-35 1.4E-39 377.8 9.8 195 1056-1262 295-518 (958)
66 PTZ00399 cysteinyl-tRNA-synthe 100.0 6.6E-32 1.4E-36 334.2 33.9 169 766-967 267-437 (651)
67 TIGR00392 ileS isoleucyl-tRNA 100.0 1.1E-33 2.3E-38 367.5 11.3 169 1095-1263 335-548 (861)
68 TIGR00435 cysS cysteinyl-tRNA 100.0 7.4E-32 1.6E-36 324.5 26.2 128 16-159 19-147 (465)
69 PRK13208 valS valyl-tRNA synth 100.0 1.5E-33 3.3E-38 363.0 11.2 198 1055-1261 239-468 (800)
70 PRK12418 cysteinyl-tRNA synthe 100.0 4.9E-31 1.1E-35 305.4 23.3 124 18-158 9-137 (384)
71 TIGR03447 mycothiol_MshC cyste 100.0 3.4E-31 7.3E-36 307.6 21.6 125 17-158 35-164 (411)
72 PRK14536 cysS cysteinyl-tRNA s 100.0 4.8E-29 1E-33 296.8 28.1 122 21-158 26-157 (490)
73 PLN02946 cysteine-tRNA ligase 100.0 3.8E-29 8.2E-34 300.2 26.9 123 20-158 82-204 (557)
74 PRK14535 cysS cysteinyl-tRNA s 100.0 2.7E-28 5.8E-33 292.9 26.1 118 27-158 255-373 (699)
75 KOG0434|consensus 100.0 1E-29 2.2E-34 292.6 5.4 141 1089-1230 316-475 (1070)
76 PRK14534 cysS cysteinyl-tRNA s 99.9 2.2E-26 4.7E-31 272.6 27.0 123 23-159 24-156 (481)
77 PRK01611 argS arginyl-tRNA syn 99.9 1.8E-24 3.8E-29 265.3 31.1 125 18-155 110-235 (507)
78 cd00672 CysRS_core catalytic c 99.9 2.8E-25 6E-30 240.3 17.1 94 16-124 18-112 (213)
79 COG0215 CysS Cysteinyl-tRNA sy 99.9 2E-24 4.4E-29 249.6 22.7 146 767-957 221-368 (464)
80 PRK12300 leuS leucyl-tRNA synt 99.9 7.9E-26 1.7E-30 292.5 7.1 117 1111-1229 338-461 (897)
81 PF13603 tRNA-synt_1_2: Leucyl 99.9 4.7E-25 1E-29 230.3 0.3 148 456-611 21-185 (185)
82 cd00674 LysRS_core_class_I cat 99.9 1E-21 2.2E-26 226.0 24.0 125 16-148 16-151 (353)
83 KOG2007|consensus 99.9 1.3E-20 2.8E-25 213.6 29.3 169 767-970 258-428 (586)
84 PF01406 tRNA-synt_1e: tRNA sy 99.9 2.4E-22 5.2E-27 222.3 10.1 123 20-158 10-133 (300)
85 PRK00390 leuS leucyl-tRNA synt 99.9 1.7E-22 3.8E-27 258.9 6.4 171 174-358 224-407 (805)
86 TIGR00456 argS arginyl-tRNA sy 99.8 2.7E-19 5.8E-24 222.1 30.4 216 773-1002 334-559 (566)
87 TIGR00396 leuS_bact leucyl-tRN 99.8 7.8E-22 1.7E-26 253.2 6.2 167 174-359 222-404 (842)
88 PRK00750 lysK lysyl-tRNA synth 99.8 5.8E-19 1.2E-23 214.9 19.0 125 16-146 20-155 (510)
89 PLN02563 aminoacyl-tRNA ligase 99.8 2.4E-20 5.1E-25 239.7 7.1 174 174-359 302-497 (963)
90 cd00817 ValRS_core catalytic c 99.8 4.5E-20 9.7E-25 218.7 7.1 107 1157-1263 156-280 (382)
91 cd07960 Anticodon_Ia_Ile_BEm A 99.7 3.9E-17 8.4E-22 174.1 16.1 153 882-1036 1-157 (180)
92 cd07961 Anticodon_Ia_Ile_ABEc 99.7 2.6E-17 5.7E-22 175.9 14.4 153 882-1036 1-160 (183)
93 cd00671 ArgRS_core catalytic c 99.7 8.7E-17 1.9E-21 175.6 13.3 124 21-160 2-125 (212)
94 cd00818 IleRS_core catalytic c 99.7 2.1E-17 4.5E-22 192.9 7.4 113 19-132 1-120 (338)
95 PF13603 tRNA-synt_1_2: Leucyl 99.7 5.8E-18 1.3E-22 177.2 -0.3 155 174-352 5-184 (185)
96 COG0018 ArgS Arginyl-tRNA synt 99.7 7.5E-14 1.6E-18 170.4 33.5 130 19-151 117-289 (577)
97 PRK12451 arginyl-tRNA syntheta 99.7 6.7E-14 1.4E-18 173.4 33.6 132 18-154 112-285 (562)
98 TIGR00467 lysS_arch lysyl-tRNA 99.6 1.3E-15 2.8E-20 184.0 16.3 94 17-116 16-121 (515)
99 PRK12268 methionyl-tRNA synthe 99.6 2.1E-16 4.6E-21 197.6 4.1 133 18-163 2-135 (556)
100 KOG0437|consensus 99.6 1.1E-15 2.4E-20 179.2 8.3 175 349-569 222-405 (1080)
101 PF08264 Anticodon_1: Anticodo 99.6 1.3E-14 2.8E-19 150.6 11.1 110 923-1034 1-110 (153)
102 PLN02286 arginine-tRNA ligase 99.5 1.3E-11 2.8E-16 153.2 34.3 194 800-1002 364-569 (576)
103 TIGR00398 metG methionyl-tRNA 99.5 5.4E-15 1.2E-19 183.9 3.3 132 21-165 1-132 (530)
104 cd07962 Anticodon_Ia_Val Antic 99.5 4.4E-13 9.5E-18 136.0 14.8 133 882-1016 1-135 (135)
105 PRK11893 methionyl-tRNA synthe 99.4 8.2E-14 1.8E-18 173.1 5.9 71 1155-1225 142-216 (511)
106 cd07957 Anticodon_Ia_Met Antic 99.4 1.1E-12 2.3E-17 131.8 12.7 122 893-1016 5-129 (129)
107 PRK12267 methionyl-tRNA synthe 99.4 1E-13 2.2E-18 175.8 6.0 71 1155-1225 144-219 (648)
108 cd07959 Anticodon_Ia_Leu_AEc A 99.4 1.8E-12 3.9E-17 128.0 13.0 116 882-1016 1-117 (117)
109 cd07958 Anticodon_Ia_Leu_BEm A 99.3 1.8E-11 3.8E-16 120.7 12.5 117 882-1016 1-117 (117)
110 cd00668 Ile_Leu_Val_MetRS_core 99.2 4.8E-12 1E-16 146.9 5.4 92 1131-1259 115-206 (312)
111 cd00802 class_I_aaRS_core cata 99.2 5.6E-11 1.2E-15 121.8 8.8 76 24-109 2-77 (143)
112 cd00814 MetRS_core catalytic c 99.1 4.2E-11 9E-16 139.4 5.2 91 1133-1225 102-197 (319)
113 PRK00133 metG methionyl-tRNA s 99.0 1.6E-10 3.4E-15 147.1 4.5 69 1155-1224 170-241 (673)
114 PF00750 tRNA-synt_1d: tRNA sy 99.0 1.5E-09 3.2E-14 127.8 9.5 138 16-156 17-200 (354)
115 COG0495 LeuS Leucyl-tRNA synth 98.9 3.4E-09 7.3E-14 132.9 10.3 139 174-326 227-370 (814)
116 cd07375 Anticodon_Ia_like Anti 98.9 2.2E-08 4.8E-13 98.3 13.1 115 885-1005 2-117 (117)
117 cd00812 LeuRS_core catalytic c 98.6 3.8E-08 8.3E-13 114.3 4.1 75 1134-1225 105-181 (314)
118 KOG0435|consensus 98.5 1E-07 2.2E-12 112.9 7.4 173 176-391 251-428 (876)
119 PLN02610 probable methionyl-tR 98.5 8.9E-08 1.9E-12 122.8 4.2 78 1148-1225 181-262 (801)
120 PLN02224 methionine-tRNA ligas 98.3 3.2E-07 6.9E-12 114.4 4.3 139 17-168 67-205 (616)
121 COG0143 MetG Methionyl-tRNA sy 98.3 4.7E-07 1E-11 110.5 3.8 72 1153-1224 171-246 (558)
122 cd09287 GluRS_non_core catalyt 98.1 4.8E-06 1E-10 91.4 8.0 94 24-148 4-97 (240)
123 PF09334 tRNA-synt_1g: tRNA sy 97.9 5.9E-06 1.3E-10 98.6 4.0 73 1152-1224 164-238 (391)
124 PRK04156 gltX glutamyl-tRNA sy 97.9 2.5E-05 5.5E-10 95.6 7.8 98 21-149 101-198 (567)
125 TIGR00463 gltX_arch glutamyl-t 97.7 7.8E-05 1.7E-09 91.3 7.9 96 21-149 93-188 (560)
126 PLN03233 putative glutamate-tR 97.5 0.00022 4.9E-09 86.4 8.8 96 21-149 11-106 (523)
127 PTZ00437 glutaminyl-tRNA synth 97.5 0.00043 9.3E-09 84.2 10.5 95 22-149 52-146 (574)
128 TIGR03838 queuosine_YadB gluta 97.5 0.00027 5.9E-09 79.6 8.3 92 25-149 4-96 (272)
129 PTZ00402 glutamyl-tRNA synthet 97.5 0.00029 6.3E-09 86.4 8.6 94 21-147 52-146 (601)
130 TIGR00440 glnS glutaminyl-tRNA 97.4 0.00026 5.6E-09 86.0 8.1 94 24-149 3-96 (522)
131 cd00807 GlnRS_core catalytic c 97.4 0.00038 8.2E-09 76.4 8.4 93 23-148 3-95 (238)
132 PF01921 tRNA-synt_1f: tRNA sy 97.4 0.00019 4E-09 82.9 6.3 97 18-116 22-127 (360)
133 PLN02907 glutamate-tRNA ligase 97.4 0.00038 8.3E-09 88.6 8.7 94 22-148 214-307 (722)
134 PRK12558 glutamyl-tRNA synthet 97.3 0.00053 1.1E-08 82.3 8.9 94 23-149 4-97 (445)
135 PF00749 tRNA-synt_1c: tRNA sy 97.3 0.00079 1.7E-08 78.1 9.7 91 26-148 6-96 (314)
136 PRK05347 glutaminyl-tRNA synth 97.3 0.00077 1.7E-08 82.2 9.2 97 21-149 29-125 (554)
137 PRK14703 glutaminyl-tRNA synth 97.2 0.00084 1.8E-08 85.3 8.9 100 18-149 28-127 (771)
138 PLN02859 glutamine-tRNA ligase 97.1 0.0026 5.7E-08 80.1 11.3 95 22-149 265-359 (788)
139 COG0008 GlnS Glutamyl- and glu 97.0 0.0019 4.1E-08 78.0 9.5 95 22-149 10-105 (472)
140 TIGR00464 gltX_bact glutamyl-t 97.0 0.0012 2.7E-08 80.6 7.9 94 24-149 4-97 (470)
141 cd00418 GlxRS_core catalytic c 97.0 0.0022 4.7E-08 70.5 8.7 105 23-168 3-108 (230)
142 COG1384 LysS Lysyl-tRNA synthe 97.0 0.00071 1.5E-08 80.3 5.0 95 19-116 19-124 (521)
143 PRK05710 glutamyl-Q tRNA(Asp) 97.0 0.0018 4E-08 73.8 7.8 95 22-148 6-100 (299)
144 PRK12410 glutamylglutaminyl-tR 96.9 0.0023 5E-08 76.5 8.7 89 27-148 5-93 (433)
145 PRK14895 gltX glutamyl-tRNA sy 96.8 0.0045 9.7E-08 75.4 9.4 95 23-149 6-100 (513)
146 cd00808 GluRS_core catalytic c 96.6 0.0058 1.3E-07 67.7 8.6 89 23-144 3-100 (239)
147 PLN02627 glutamyl-tRNA synthet 96.6 0.0065 1.4E-07 74.1 9.0 94 22-148 46-148 (535)
148 PF01921 tRNA-synt_1f: tRNA sy 96.4 0.0025 5.4E-08 73.8 4.0 63 792-885 261-323 (360)
149 COG1384 LysS Lysyl-tRNA synthe 96.4 0.011 2.3E-07 70.7 9.1 76 782-887 246-322 (521)
150 PRK01406 gltX glutamyl-tRNA sy 96.4 0.0097 2.1E-07 72.9 8.9 95 22-149 5-107 (476)
151 KOG4426|consensus 96.2 0.033 7.1E-07 64.1 11.1 140 18-163 187-369 (656)
152 KOG1247|consensus 96.1 0.0058 1.3E-07 69.8 4.5 71 1153-1224 181-256 (567)
153 KOG1147|consensus 95.7 0.033 7.2E-07 65.8 8.5 99 22-153 201-299 (712)
154 KOG1148|consensus 94.9 0.071 1.5E-06 63.8 8.1 95 22-149 249-343 (764)
155 KOG1195|consensus 94.9 0.15 3.2E-06 60.6 10.5 132 18-153 109-282 (567)
156 PF00750 tRNA-synt_1d: tRNA sy 94.5 0.018 3.8E-07 68.3 2.0 107 770-883 242-353 (354)
157 KOG1149|consensus 94.5 0.19 4.1E-06 58.6 10.0 130 26-187 38-190 (524)
158 KOG0436|consensus 93.9 0.045 9.7E-07 63.0 3.4 141 16-169 36-176 (578)
159 cd07956 Anticodon_Ia_Arg Antic 93.8 0.73 1.6E-05 47.9 12.3 135 860-1002 2-149 (156)
160 cd00802 class_I_aaRS_core cata 92.5 0.11 2.4E-06 53.2 3.7 51 767-819 93-143 (143)
161 cd00395 Tyr_Trp_RS_core cataly 91.1 0.27 5.8E-06 56.1 5.0 57 766-825 152-209 (273)
162 PRK13354 tyrosyl-tRNA syntheta 91.0 0.18 3.8E-06 60.8 3.6 60 765-827 184-243 (410)
163 PLN02486 aminoacyl-tRNA ligase 90.8 2 4.4E-05 51.2 12.1 83 12-116 65-148 (383)
164 PRK05912 tyrosyl-tRNA syntheta 88.8 0.24 5.2E-06 59.7 2.4 60 765-827 186-245 (408)
165 cd00805 TyrRS_core catalytic c 88.3 0.54 1.2E-05 53.6 4.7 59 767-830 151-210 (269)
166 PF00579 tRNA-synt_1b: tRNA sy 87.3 0.47 1E-05 54.8 3.5 62 766-827 148-212 (292)
167 cd07961 Anticodon_Ia_Ile_ABEc 87.2 0.055 1.2E-06 57.9 -4.1 51 1038-1089 92-142 (183)
168 TIGR00233 trpS tryptophanyl-tR 86.9 2.5 5.4E-05 49.6 9.1 57 766-824 138-203 (328)
169 PRK12556 tryptophanyl-tRNA syn 85.7 0.49 1.1E-05 55.4 2.5 58 766-824 148-212 (332)
170 cd00418 GlxRS_core catalytic c 84.8 2.8 6.1E-05 46.4 7.7 48 799-875 138-185 (230)
171 PRK04156 gltX glutamyl-tRNA sy 84.8 1.6 3.5E-05 54.4 6.4 90 767-887 288-398 (567)
172 cd00808 GluRS_core catalytic c 84.1 4.6 9.9E-05 45.1 9.0 78 766-875 117-194 (239)
173 TIGR00464 gltX_bact glutamyl-t 83.0 28 0.0006 43.1 16.1 110 767-889 197-310 (470)
174 PRK08560 tyrosyl-tRNA syntheta 81.9 1.1 2.4E-05 52.5 3.4 57 766-826 167-227 (329)
175 COG0215 CysS Cysteinyl-tRNA sy 81.2 3.5 7.7E-05 49.7 7.2 123 20-158 24-147 (464)
176 TIGR00234 tyrS tyrosyl-tRNA sy 81.0 1.3 2.8E-05 53.0 3.5 56 767-825 177-232 (377)
177 PRK12284 tryptophanyl-tRNA syn 78.6 1.3 2.7E-05 53.2 2.4 58 766-824 147-212 (431)
178 PF08264 Anticodon_1: Anticodo 77.4 0.19 4.1E-06 51.9 -4.5 48 1038-1087 45-92 (153)
179 PRK12285 tryptophanyl-tRNA syn 76.9 1.3 2.9E-05 52.5 1.9 58 766-825 202-263 (368)
180 PRK12285 tryptophanyl-tRNA syn 75.9 18 0.00038 43.2 10.9 78 16-116 62-139 (368)
181 COG0180 TrpS Tryptophanyl-tRNA 74.9 2.1 4.6E-05 49.3 2.8 57 766-824 144-209 (314)
182 cd07960 Anticodon_Ia_Ile_BEm A 74.6 0.45 9.7E-06 50.7 -2.6 51 1039-1089 91-141 (180)
183 cd00395 Tyr_Trp_RS_core cataly 72.8 5.8 0.00013 45.3 5.7 71 29-114 7-80 (273)
184 cd00805 TyrRS_core catalytic c 72.4 4.8 0.0001 45.9 4.9 71 29-114 8-81 (269)
185 PRK12282 tryptophanyl-tRNA syn 71.9 2.5 5.4E-05 49.7 2.5 58 766-824 141-206 (333)
186 cd00671 ArgRS_core catalytic c 71.4 4.9 0.00011 44.1 4.5 50 770-820 162-212 (212)
187 cd00806 TrpRS_core catalytic c 69.9 3.7 8.1E-05 47.1 3.3 58 766-825 136-203 (280)
188 cd00806 TrpRS_core catalytic c 69.9 8.5 0.00018 44.2 6.2 67 29-116 7-73 (280)
189 PTZ00126 tyrosyl-tRNA syntheta 68.6 3.7 8.1E-05 49.0 3.0 56 766-824 209-268 (383)
190 COG0162 TyrS Tyrosyl-tRNA synt 67.4 3.4 7.3E-05 49.5 2.3 53 767-823 180-233 (401)
191 PRK00927 tryptophanyl-tRNA syn 67.3 2.9 6.4E-05 49.1 1.8 58 766-824 137-206 (333)
192 PRK12283 tryptophanyl-tRNA syn 66.1 2.6 5.6E-05 50.1 1.0 77 29-129 10-88 (398)
193 PRK12284 tryptophanyl-tRNA syn 64.7 15 0.00033 44.2 7.1 98 29-149 10-108 (431)
194 cd07959 Anticodon_Ia_Leu_AEc A 64.4 1.1 2.4E-05 43.7 -2.1 31 1057-1087 87-117 (117)
195 PRK01406 gltX glutamyl-tRNA sy 61.9 17 0.00037 45.0 7.0 58 769-830 209-266 (476)
196 PRK13354 tyrosyl-tRNA syntheta 61.4 14 0.0003 44.8 6.0 50 18-72 31-83 (410)
197 KOG2623|consensus 60.8 7 0.00015 45.5 3.1 65 759-826 219-285 (467)
198 PF05746 DALR_1: DALR anticodo 60.5 46 0.00099 32.5 8.6 79 920-1002 32-112 (119)
199 PLN02886 aminoacyl-tRNA ligase 59.2 16 0.00035 43.6 5.9 89 29-142 54-143 (389)
200 PF01927 Mut7-C: Mut7-C RNAse 55.5 13 0.00028 38.3 3.8 31 48-80 12-42 (147)
201 PRK14535 cysS cysteinyl-tRNA s 54.3 73 0.0016 40.8 10.7 146 766-957 445-607 (699)
202 PRK00260 cysS cysteinyl-tRNA s 53.6 54 0.0012 40.6 9.5 125 17-158 22-147 (463)
203 PRK14895 gltX glutamyl-tRNA sy 53.3 32 0.0007 42.7 7.3 76 768-875 197-272 (513)
204 PRK05912 tyrosyl-tRNA syntheta 52.7 23 0.0005 42.9 6.0 41 19-64 32-73 (408)
205 PRK08560 tyrosyl-tRNA syntheta 52.5 18 0.0004 42.5 4.9 76 18-116 28-103 (329)
206 PRK00927 tryptophanyl-tRNA syn 49.7 35 0.00075 40.3 6.6 65 29-116 9-73 (333)
207 PRK12556 tryptophanyl-tRNA syn 48.2 36 0.00078 40.1 6.4 90 29-141 11-101 (332)
208 PRK12418 cysteinyl-tRNA synthe 47.2 7.2 0.00016 46.6 0.5 148 766-967 213-363 (384)
209 PLN02486 aminoacyl-tRNA ligase 45.1 15 0.00032 44.0 2.6 52 770-825 222-277 (383)
210 TIGR03447 mycothiol_MshC cyste 42.9 9.2 0.0002 46.1 0.5 141 766-957 240-382 (411)
211 KOG2007|consensus 42.4 80 0.0017 38.5 7.9 127 20-158 57-185 (586)
212 KOG1195|consensus 42.1 2.7E+02 0.006 34.2 12.2 173 813-1002 366-560 (567)
213 PLN02517 phosphatidylcholine-s 41.6 14 0.0003 46.1 1.7 71 1133-1206 159-235 (642)
214 cd07958 Anticodon_Ia_Leu_BEm A 40.4 4.7 0.0001 39.1 -2.1 30 1058-1087 88-117 (117)
215 PRK12410 glutamylglutaminyl-tR 38.1 66 0.0014 39.2 6.6 47 800-875 221-267 (433)
216 TIGR00234 tyrS tyrosyl-tRNA sy 37.8 77 0.0017 38.1 7.2 40 20-64 30-70 (377)
217 PTZ00348 tyrosyl-tRNA syntheta 37.6 21 0.00045 45.8 2.5 57 766-825 174-234 (682)
218 COG0162 TyrS Tyrosyl-tRNA synt 35.4 60 0.0013 39.1 5.6 97 30-144 41-149 (401)
219 COG0180 TrpS Tryptophanyl-tRNA 35.1 61 0.0013 37.6 5.5 77 19-118 4-82 (314)
220 cd00807 GlnRS_core catalytic c 34.9 95 0.0021 34.7 6.7 28 860-887 197-224 (238)
221 PF00579 tRNA-synt_1b: tRNA sy 33.9 37 0.00081 39.1 3.6 42 19-65 4-45 (292)
222 PF01406 tRNA-synt_1e: tRNA sy 33.7 15 0.00032 42.3 0.2 94 766-891 205-299 (300)
223 PLN02627 glutamyl-tRNA synthet 33.6 2.7E+02 0.0058 35.0 10.9 47 800-875 279-325 (535)
224 cd00672 CysRS_core catalytic c 33.3 16 0.00034 40.2 0.4 87 766-883 127-213 (213)
225 PRK12283 tryptophanyl-tRNA syn 33.0 1.3E+02 0.0028 36.3 7.8 22 804-825 254-275 (398)
226 cd07957 Anticodon_Ia_Met Antic 29.2 16 0.00036 35.9 -0.3 27 1061-1087 103-129 (129)
227 COG1656 Uncharacterized conser 28.6 1.2E+02 0.0026 31.7 5.7 90 48-164 18-108 (165)
228 cd07962 Anticodon_Ia_Val Antic 26.3 8.7 0.00019 38.7 -2.9 32 1056-1087 104-135 (135)
229 PTZ00399 cysteinyl-tRNA-synthe 26.2 24 0.00052 45.4 0.3 124 19-158 61-186 (651)
230 TIGR00233 trpS tryptophanyl-tR 25.9 46 0.001 39.2 2.5 34 29-66 10-43 (328)
231 PLN02886 aminoacyl-tRNA ligase 25.2 50 0.0011 39.6 2.7 16 766-781 183-198 (389)
232 PRK12558 glutamyl-tRNA synthet 25.0 1.3E+02 0.0029 36.9 6.2 47 800-875 226-272 (445)
233 PTZ00126 tyrosyl-tRNA syntheta 24.7 66 0.0014 38.6 3.6 43 18-64 64-106 (383)
234 TIGR00435 cysS cysteinyl-tRNA 24.4 28 0.00061 43.0 0.4 153 766-957 218-371 (465)
235 PRK05710 glutamyl-Q tRNA(Asp) 22.9 83 0.0018 36.5 3.8 23 800-822 222-244 (299)
236 PLN02946 cysteine-tRNA ligase 21.3 36 0.00078 42.8 0.5 166 766-967 276-443 (557)
237 PTZ00437 glutaminyl-tRNA synth 20.8 1.3E+03 0.029 29.3 13.6 28 860-887 319-346 (574)
238 KOG2145|consensus 20.8 94 0.002 35.1 3.4 90 16-130 81-171 (397)
No 1
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-153 Score=1413.94 Aligned_cols=735 Identities=40% Similarity=0.747 Sum_probs=677.3
Q ss_pred hHHHHHH-HHcCCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcc---
Q psy17125 6 ELYSWQR-EALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD--- 81 (1281)
Q Consensus 6 ~~~~~~~-~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~--- 81 (1281)
+||++.+ ++++++|+|+++|||||+||.+|+|||+|.+++|++.||+.|+||+|.+.|||||||||||.+++++.|
T Consensus 35 ~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k 114 (933)
T COG0060 35 DIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGK 114 (933)
T ss_pred hHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCc
Confidence 5898888 477899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCC
Q psy17125 82 ---KLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPS 158 (1281)
Q Consensus 82 ---~~~~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~ 158 (1281)
..++.++++++|+++|.++++.|+++++|||++.||+ ++|.|+|+.|++.++|+|++|++||+||++.+||+|||+
T Consensus 115 ~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~-npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~ 193 (933)
T COG0060 115 KDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWE-NPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPR 193 (933)
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccC-CCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCC
Confidence 2467889999999999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEee
Q psy17125 159 SRTALAESELEYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVA 238 (1281)
Q Consensus 159 ~~t~lad~ev~~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~ 238 (1281)
|+|+||++||+|.+ +.++|+||+|++.+.. +..+.+++||||||||||+|.||+|||+.+|++++++++.+|+|
T Consensus 194 c~TaLAeaEvey~d-~~dpSIyV~F~v~~~~-----~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA 267 (933)
T COG0060 194 CETALAEAEVEYGD-VKDPSIYVKFPVKDEG-----LDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILA 267 (933)
T ss_pred CCcchhhhhhcccc-cCCceEEEEEEeccCC-----CCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEh
Confidence 99999999999998 9999999999998641 34678999999999999999999999999999998888888888
Q ss_pred hhhHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCc
Q psy17125 239 KCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPV 318 (1281)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~ 318 (1281)
+.+++++.
T Consensus 268 ~~lve~~~------------------------------------------------------------------------ 275 (933)
T COG0060 268 KALVESVA------------------------------------------------------------------------ 275 (933)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 87765321
Q ss_pred ceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhh
Q psy17125 319 LNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALV 398 (1281)
Q Consensus 319 ~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~ 398 (1281)
T Consensus 276 -------------------------------------------------------------------------------- 275 (933)
T COG0060 276 -------------------------------------------------------------------------------- 275 (933)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCC
Q psy17125 399 CKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNP 478 (1281)
Q Consensus 399 ~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p 478 (1281)
T Consensus 276 -------------------------------------------------------------------------------- 275 (933)
T COG0060 276 -------------------------------------------------------------------------------- 275 (933)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceecccCceEEeehhhHHhHHhhccCC-eeEeccccccccCCcccccCCCc--cCcceeeeeCCccccCCCCceEe
Q psy17125 479 ALEYSVASVKGANVIVAKCLVENLKWTFQTD-IDVVCDFPGQYLQDITYIHPINK--EQRDLKLLPAGFVSSSKGTGLVH 555 (1281)
Q Consensus 479 ~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~-~~~~~~~~G~~L~g~~~~hPl~~--~~~~ipIi~~~~V~~~~GTG~V~ 555 (1281)
+..+.+ ++++++++|++|+|..|.|||.. .+...||+.++||+.+.|||+||
T Consensus 276 -------------------------~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VH 330 (933)
T COG0060 276 -------------------------KKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVH 330 (933)
T ss_pred -------------------------HHcCCcceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCcccee
Confidence 111111 46778899999999999999985 12239999999999999999999
Q ss_pred cCCCCChhHHHHHHHcC-CCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCC
Q psy17125 556 CAPAHGQDDFLLALAEK-IPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKK 632 (1281)
Q Consensus 556 ~~PaH~~~Dy~~~~~~~-lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~ 632 (1281)
+|||||++||++|+++| +|++++||++|+|++++ +.|.|+.+. +|++.|++.|++ .+++.+.+.|||||||||++
T Consensus 331 tAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~-~~~~G~~v~-dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~kt 408 (933)
T COG0060 331 TAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEA-PKYEGLFVK-DANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKT 408 (933)
T ss_pred cCCCCCHHHHHHHHHcCCcCCccccCCCccccccc-hhhCCceec-cCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCC
Confidence 99999999999999999 79999999999999998 679999997 899999999999 58999999999999999999
Q ss_pred ceEEccccccccChhhHHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec--CCeEEe-chhhH
Q psy17125 633 PVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD--GDTIIV-NEANI 709 (1281)
Q Consensus 633 ~v~~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~--~~~i~v-~~~~~ 709 (1281)
|+++|+++|||++++++++++++.+++++|+|++.++++.+||++++||||||||+||+|||+|+| ++.+.+ ..++.
T Consensus 409 PlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~ 488 (933)
T COG0060 409 PLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELE 488 (933)
T ss_pred eeEEeecchheeEHHHHHHHHHHHHhcceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEECCCCCeeccHHHHH
Confidence 999999999999999999999988889999999999999999999999999999999999999999 456665 67788
Q ss_pred HHHHhhhhhcCCCCccCcCcccccccc-ccccccccccccccccccCCcchhhhccC-----CCc---cceeeccceeee
Q psy17125 710 KHFCTLIDEHGPDFWWSLSVEQLLNTS-DVNSNVTKSNDILDIWFDSGISWSHVLKD-----KPA---HVYMEGMDQING 780 (1281)
Q Consensus 710 ~~i~~~~~~~g~d~~~~~~~~~l~~~~-~~~~~~~~~~dvlD~WFdS~l~w~~~l~~-----~p~---dl~~~G~Dii~~ 780 (1281)
+++...++..|.+.||...+++++.+. .++..+.|.+|+||+|||||++|+..+.. +|. |+|.+|.||.|+
T Consensus 489 e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~~~~~~~~~~~~aD~~lEGsDQ~RG 568 (933)
T COG0060 489 ELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRG 568 (933)
T ss_pred HHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccCCcccccCccccCcEEEEeccccch
Confidence 888888888999999998899988875 46669999999999999999998877653 666 999999999999
Q ss_pred hhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCC
Q psy17125 781 WFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPA 860 (1281)
Q Consensus 781 wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~ 860 (1281)
||+|+++.+++++++.||++|++|||++|.+|+|||||+||+|+|.++++ +
T Consensus 569 WF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~-----------------------------~ 619 (933)
T COG0060 569 WFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVID-----------------------------K 619 (933)
T ss_pred hHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHH-----------------------------h
Confidence 99999999999999999999999999999999999999999999999999 9
Q ss_pred CchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCC----CcCcHHHHHHHHHHHHHHHH
Q psy17125 861 YGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTG----SISRYVDVYMLKRLCEFQNT 936 (1281)
Q Consensus 861 yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~----~~~~~~d~~il~~l~~~~~~ 936 (1281)
||||+||||++++. ...|+.|+.++++...+.+++|||++||+++++++|++... ..+..+|+|++++++++++.
T Consensus 620 yGADiLRLwv~ssd-~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~ 698 (933)
T COG0060 620 YGADILRLWVASSD-YWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKE 698 (933)
T ss_pred hCchheeeeeeecC-chhccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHH
Confidence 99999999999998 58999999999999999999999999999999999987642 25678899999999999999
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhC
Q psy17125 937 MDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016 (1281)
Q Consensus 937 v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L 1016 (1281)
++++|++|+|+++++.+++|+..+|++||++..|+++|++..++.+|++++.+|+.++..++++||||+||+||++|+.|
T Consensus 699 v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l 778 (933)
T COG0060 699 VREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNL 778 (933)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhC
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccccccccccc
Q psy17125 1017 PSRQGTFSSFCHFKVYLQYSGS 1038 (1281)
Q Consensus 1017 ~~~~~~~~s~~~~~~~p~~~~~ 1038 (1281)
+.... ..++|...||.++..
T Consensus 779 ~~~~~--~eSVhl~~~p~~~~~ 798 (933)
T COG0060 779 PGERK--EESVHLEDWPEVDEE 798 (933)
T ss_pred ccCCC--CceeEeccCCccccc
Confidence 76642 466888889977643
No 2
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=4.5e-143 Score=1380.40 Aligned_cols=738 Identities=45% Similarity=0.800 Sum_probs=654.8
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcc----cCCCHHHHHHHH
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD----KLLSPLDIRKKA 93 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~----~~~~~~e~~~~~ 93 (1281)
+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++||||||+|||.+++++.+ .++++++++++|
T Consensus 31 ~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c 110 (974)
T PLN02843 31 GESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKA 110 (974)
T ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999999987764 347899999999
Q ss_pred HHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCCC
Q psy17125 94 KNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPD 173 (1281)
Q Consensus 94 ~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~~ 173 (1281)
++|++++++.|+++|++||++.||+| +|+|+||.|.+.++++|.+|+++|+||++.+||+|||+|+|+|||+||+|++.
T Consensus 111 ~~~~~~~~~~~~~~~~~lG~~~Dw~~-~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~Talae~Evey~e~ 189 (974)
T PLN02843 111 AKFAKKTVDTQRESFKRYGVWGDWEN-PYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEYPEG 189 (974)
T ss_pred HHHHHHHHHHHHHHHHHhCCceecCC-CCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCcchHhHhcccCC
Confidence 99999999999999999999999995 99999999999999999999999999999999999999999999999999976
Q ss_pred CcCccEEEEEEeccCcccccc---C-CCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecC-----------------
Q psy17125 174 HVSKSIYLKIKLNQVPAHLLE---G-ATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG----------------- 232 (1281)
Q Consensus 174 ~~~~~~~vkf~l~~~~~~~~~---~-~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~----------------- 232 (1281)
++++++||+|++.+....+.. + ..+.+++||||||||||||+||+|||+.+|+++++++
T Consensus 190 ~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~ 269 (974)
T PLN02843 190 HVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPG 269 (974)
T ss_pred ccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEeccccccccccccccccccc
Confidence 789999999999753211110 0 1136999999999999999999999999999998763
Q ss_pred --------ceEEeehhhHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCC
Q psy17125 233 --------ANVIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHG 304 (1281)
Q Consensus 233 --------~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~ 304 (1281)
+.+||++.+++.+
T Consensus 270 ~~~~~~~~~~~iva~~l~~~~----------------------------------------------------------- 290 (974)
T PLN02843 270 NVLKEQQKLFLIVATDLVPAL----------------------------------------------------------- 290 (974)
T ss_pred cccccccCceEEeHHHHHHHH-----------------------------------------------------------
Confidence 3455554444321
Q ss_pred hhhHHHHHHcCCCcceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccch
Q psy17125 305 QDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQ 384 (1281)
Q Consensus 305 ~~d~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~ 384 (1281)
T Consensus 291 -------------------------------------------------------------------------------- 290 (974)
T PLN02843 291 -------------------------------------------------------------------------------- 290 (974)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCchhhhhhhhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeecc
Q psy17125 385 WFIDTERIKPEALVCKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTT 464 (1281)
Q Consensus 385 w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~ 464 (1281)
T Consensus 291 -------------------------------------------------------------------------------- 290 (974)
T PLN02843 291 -------------------------------------------------------------------------------- 290 (974)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcccccccCCccccceecccCceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeee-eCC
Q psy17125 465 PWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLL-PAG 543 (1281)
Q Consensus 465 P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi-~~~ 543 (1281)
....+.+++++++++|++|+|++|.||+.+.. +||+ +++
T Consensus 291 --------------------------------------~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~--~pii~~~~ 330 (974)
T PLN02843 291 --------------------------------------EAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRE--SPVVIGGD 330 (974)
T ss_pred --------------------------------------HHhhCCceEEEeeechHHcCCCEEECCCCCCc--eeEEecCC
Confidence 11111134566778899999999999998764 8996 589
Q ss_pred ccccCCCCceEecCCCCChhHHHHHHHcCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccc
Q psy17125 544 FVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQ 621 (1281)
Q Consensus 544 ~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~ 621 (1281)
||++++|||+||+|||||++||+++++||||++++||++|+|++++| +|.|+.++++|++.|++.|++ .+++.+.+.
T Consensus 331 ~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~-~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~ 409 (974)
T PLN02843 331 YITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAG-QFSGLSVLGEGNAAVVEALDEAGSLLMEEAYG 409 (974)
T ss_pred ccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCc-ccCCcEehhcchHHHHHHHHHCCCeeeeeeec
Confidence 99999999999999999999999999999999999999999998875 699999988899999999998 578889999
Q ss_pred cccCcccCCCCceEEccccccccChhhHHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec--C
Q psy17125 622 HSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD--G 699 (1281)
Q Consensus 622 ~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~--~ 699 (1281)
|+||+||||++||++|+++|||++++.+++++++++++++|+|+..++++.+||++++||||||||+||+|||+|+| +
T Consensus 410 H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~pIP~~~~~~~ 489 (974)
T PLN02843 410 HKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVET 489 (974)
T ss_pred CCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHhccEEEChHHHHHHHHHHhcCcceeeeeccccccEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred CeEEechhhHHHHHhhhhhcCCCCccCcCccccccccc--cccccccccccccccccCCcchhhhccC-----CCcccee
Q psy17125 700 DTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSD--VNSNVTKSNDILDIWFDSGISWSHVLKD-----KPAHVYM 772 (1281)
Q Consensus 700 ~~i~v~~~~~~~i~~~~~~~g~d~~~~~~~~~l~~~~~--~~~~~~~~~dvlD~WFdS~l~w~~~l~~-----~p~dl~~ 772 (1281)
+++++..+++.++.+.++..|.+.||..+.+++.+..+ ++..+.+++||||||||||++|..+++. ||+|+|+
T Consensus 490 ~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~~~~~~~~PaDl~~ 569 (974)
T PLN02843 490 KEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLGSREGLSYPADLYL 569 (974)
T ss_pred CCEeechhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhccccccCCCceeee
Confidence 78899999999998888888999999988888877543 2456889999999999999999876532 8999999
Q ss_pred eccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCccccccccc
Q psy17125 773 EGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDIT 852 (1281)
Q Consensus 773 ~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~ 852 (1281)
+|+||+||||+++++.++++.+..||+++++||+++|.+|+|||||+||+|+|.++++|++.
T Consensus 570 eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~------------------ 631 (974)
T PLN02843 570 EGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKN------------------ 631 (974)
T ss_pred eeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccc------------------
Confidence 99999999999999999999999999999999999999999999999999999999996531
Q ss_pred ccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCC---CCcCcHHHHHHHHH
Q psy17125 853 QGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSEST---GSISRYVDVYMLKR 929 (1281)
Q Consensus 853 ~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~---~~~~~~~d~~il~~ 929 (1281)
.+++|+||+|++|||+++..+ .+|++|+.+.+..+.++++||+|+++|+++++.++.+.. ......+|+|++++
T Consensus 632 --~~~~~~yGaD~lR~~l~~~~~-~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLsk 708 (974)
T PLN02843 632 --QKQEPAYGADVLRLWVASVDY-TGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQ 708 (974)
T ss_pred --cccccccChHHHHHHHHhccc-CCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHH
Confidence 235678999999999998665 789999999999999999999999999999988775311 12345789999999
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccH
Q psy17125 930 LCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLA 1009 (1281)
Q Consensus 930 l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~la 1009 (1281)
++++++++.++|++|+|++|++.+++|++.+++|+|++..|+|++++..++..|++++.+|+.+++.+++||+|||||+|
T Consensus 709 L~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~a 788 (974)
T PLN02843 709 LENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLA 788 (974)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 99999999999999999999999999998999999999999999987656666777888999999999999999999999
Q ss_pred HHHHhhCCCCC-CCCcccccccccccccc
Q psy17125 1010 EEVYSHLPSRQ-GTFSSFCHFKVYLQYSG 1037 (1281)
Q Consensus 1010 eel~~~L~~~~-~~~~s~~~~~~~p~~~~ 1037 (1281)
||+|++|+... +....+++.+.||.+++
T Consensus 789 EEiw~~L~~~~~~~~~~sv~~~~~P~~~~ 817 (974)
T PLN02843 789 EDAWQNLPFQEDGSAAESVFEAGWPTPNE 817 (974)
T ss_pred HHHHHhccccccCCCCCceEecCCCCCch
Confidence 99999997531 00123567788887653
No 3
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.6e-143 Score=1379.77 Aligned_cols=744 Identities=38% Similarity=0.686 Sum_probs=653.8
Q ss_pred HHHHHHHHcCCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhc---c--
Q psy17125 7 LYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK---D-- 81 (1281)
Q Consensus 7 ~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~---~-- 81 (1281)
+|+++.+..+++++|++++|||||||.||||||+|++++|+++||+||+||+|+|++||||||+|||.++++++ |
T Consensus 42 ~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~ 121 (961)
T PRK13804 42 LYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKN 121 (961)
T ss_pred CccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCC
Confidence 34444433357789999999999999999999999999999999999999999999999999999999998876 3
Q ss_pred -cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcc
Q psy17125 82 -KLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSR 160 (1281)
Q Consensus 82 -~~~~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~ 160 (1281)
+.+++++++++|++|+.++++.|+++|++||++.||+| +|.|+||.|+++++|+|.+|+++|+|||+.+||+|||.|+
T Consensus 122 ~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~-~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~ 200 (961)
T PRK13804 122 KDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDN-PYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVER 200 (961)
T ss_pred hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCC
Confidence 24688999999999999999999999999999999995 9999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehh
Q psy17125 161 TALAESELEYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKC 240 (1281)
Q Consensus 161 t~lad~ev~~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~ 240 (1281)
|+|||+||+|++ +.++++||+|++.+.+. +. ..+.+++||||||||||||+||+|||+.+|++++++++.
T Consensus 201 TaLa~~Evey~~-~~s~~~~v~F~~~~~~~-~~--~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~------ 270 (961)
T PRK13804 201 TALAEAEIEYHD-IESDTIWVKFPVKDGKG-IL--DSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAE------ 270 (961)
T ss_pred CCccchhccccc-ccCceEEEEEEecCccc-cc--CCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEecccc------
Confidence 999999999997 89999999999965221 11 124689999999999999999999999999988643200
Q ss_pred hHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcce
Q psy17125 241 LVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLN 320 (1281)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~ 320 (1281)
.
T Consensus 271 -----------------------------------------------------------------~-------------- 271 (961)
T PRK13804 271 -----------------------------------------------------------------N-------------- 271 (961)
T ss_pred -----------------------------------------------------------------c--------------
Confidence 0
Q ss_pred eccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhh
Q psy17125 321 LITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCK 400 (1281)
Q Consensus 321 ~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~ 400 (1281)
.+|
T Consensus 272 --------------------------------------------------------------~~~--------------- 274 (961)
T PRK13804 272 --------------------------------------------------------------DFW--------------- 274 (961)
T ss_pred --------------------------------------------------------------ccc---------------
Confidence 000
Q ss_pred hhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCcc
Q psy17125 401 TVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPAL 480 (1281)
Q Consensus 401 ~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~ 480 (1281)
T Consensus 275 -------------------------------------------------------------------------------- 274 (961)
T PRK13804 275 -------------------------------------------------------------------------------- 274 (961)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceecccCceEEeehhhHHhHHhhccC-CeeEeccccccccCCcccccCCCccC---cceeeeeCCccccCCCCceEec
Q psy17125 481 EYSVASVKGANVIVAKCLVENLKWTFQT-DIDVVCDFPGQYLQDITYIHPINKEQ---RDLKLLPAGFVSSSKGTGLVHC 556 (1281)
Q Consensus 481 ~y~~~~~~~~~~i~a~~~~~~~~~~~~~-~~~~~~~~~G~~L~g~~~~hPl~~~~---~~ipIi~~~~V~~~~GTG~V~~ 556 (1281)
...++.|++|+++++++..+.+. .++++++++|++|+|++|.||+++.. ..+||++++||++++|||+||+
T Consensus 275 -----~~~~e~~iva~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~~~~GTG~Vh~ 349 (961)
T PRK13804 275 -----AKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHT 349 (961)
T ss_pred -----ccCCcEEEeHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEEEecCccCCCCCCceEEe
Confidence 00012355666666666655544 35677888999999999999998761 1399999999999999999999
Q ss_pred CCCCChhHHHHHHHcCC-CeecccCCCCccCCCCCC-------CCCCceeccccchhHHhhhcc--ccccccccccccCc
Q psy17125 557 APAHGQDDFLLALAEKI-PVLNLITNQGKYSPDAGP-------GLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPY 626 (1281)
Q Consensus 557 ~PaH~~~Dy~~~~~~~l-pi~~vid~~G~~~~~~~~-------~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~ 626 (1281)
+||||++||+++++||| |++++||++|+|++.++. +|.|+.++ +|++.|++.|++ .+++.+.+.|++|+
T Consensus 350 aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~-ea~~~Ii~~L~~~g~l~~~~~~~h~yp~ 428 (961)
T PRK13804 350 APGHGREDFNVWMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYG-DANKAVIEKLIEAGLLLARGRLKHSYPH 428 (961)
T ss_pred CCCCCHHHHHHHHHcCCCcccccCCCCeEEccCCCccccccccccCCcchh-hhhHHHHHHHHhCCCcccccceecCCCc
Confidence 99999999999999999 999999999999988654 27888875 789999999988 57888999999999
Q ss_pred ccCCCCceEEccccccccChhh-------HHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec-
Q psy17125 627 DWRTKKPVILKASQQWFIDTER-------IKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD- 698 (1281)
Q Consensus 627 ~~Rsg~~v~~~~~~qWf~~~~~-------~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~- 698 (1281)
|||||+||++++++|||++++. +++++++.+++++|+|+..++++.+||++++||||||||+||+|||+|+|
T Consensus 429 ~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~i~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~ 508 (961)
T PRK13804 429 SWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAE 508 (961)
T ss_pred cCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHHHhccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeEEEcC
Confidence 9999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred CCeEEechhhHHHHHhhhhhcCCCCccCcCcccccccc-ccccccccccccccccccCCcchhhhcc-----CCCcccee
Q psy17125 699 GDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTS-DVNSNVTKSNDILDIWFDSGISWSHVLK-----DKPAHVYM 772 (1281)
Q Consensus 699 ~~~i~v~~~~~~~i~~~~~~~g~d~~~~~~~~~l~~~~-~~~~~~~~~~dvlD~WFdS~l~w~~~l~-----~~p~dl~~ 772 (1281)
++..++...++.++...++..|.+.||..+..++++.. +++..+.+++||||||||||++|...+. .||+|+|+
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~~~~~~~~PaD~~~ 588 (961)
T PRK13804 509 DGEILMDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVLEDRPDLKWPADLYL 588 (961)
T ss_pred CCCEeccHHHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCccccccCCcccCCCceEEE
Confidence 56667777778888888888899999987766666543 3456789999999999999999877643 28999999
Q ss_pred eccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCccccccccc
Q psy17125 773 EGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDIT 852 (1281)
Q Consensus 773 ~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~ 852 (1281)
+|+||+|+||++++++++++.+..||++|++||+++|.+|+|||||+||||+|.++++
T Consensus 589 eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~---------------------- 646 (961)
T PRK13804 589 EGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIK---------------------- 646 (961)
T ss_pred EEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHH----------------------
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCC----CCcCcHHHHHHHH
Q psy17125 853 QGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSEST----GSISRYVDVYMLK 928 (1281)
Q Consensus 853 ~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~----~~~~~~~d~~il~ 928 (1281)
+||||++|||+++. ..++|++|+.+.+..+.+++++|+|++|++++++.+|.+.. .......|+|+++
T Consensus 647 -------~yGaD~lRl~lls~-~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~ 718 (961)
T PRK13804 647 -------QSGADILRLWVASV-DYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLH 718 (961)
T ss_pred -------hcCHHHHHHHHHhC-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHH
Confidence 99999999999985 55899999999998889999999999999999988775431 2245678999999
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCcc
Q psy17125 929 RLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHL 1008 (1281)
Q Consensus 929 ~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~l 1008 (1281)
+++++++++.++|++|+|++|++.+++|+++++||+|++..|+|++++..++..|.+++.+++.+++.+++||+|||||+
T Consensus 719 ~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~ 798 (961)
T PRK13804 719 RLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFT 798 (961)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999889999999999999998766666777888999999999999999999999
Q ss_pred HHHHHhhCCCCCCCCccccccccccccc
Q psy17125 1009 AEEVYSHLPSRQGTFSSFCHFKVYLQYS 1036 (1281)
Q Consensus 1009 aeel~~~L~~~~~~~~s~~~~~~~p~~~ 1036 (1281)
|||+|++|+... ..+++.+.||.++
T Consensus 799 aEeiw~~L~~~~---~~sv~l~~wP~~~ 823 (961)
T PRK13804 799 AEEAWLYRYPEE---EVSVHLEQFPETP 823 (961)
T ss_pred HHHHHHhcccCC---CCceEecCCCCCc
Confidence 999999998421 2356677788765
No 4
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.7e-142 Score=1372.66 Aligned_cols=731 Identities=42% Similarity=0.766 Sum_probs=653.9
Q ss_pred HHHHHHHHcCCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcc---cC
Q psy17125 7 LYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD---KL 83 (1281)
Q Consensus 7 ~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~---~~ 83 (1281)
+|++.++.++++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++||||||+|||.+|+++.| .+
T Consensus 37 ~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~ 116 (912)
T PRK05743 37 LYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKK 116 (912)
T ss_pred CccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCcccc
Confidence 344433333577889999999999999999999999999999999999999999999999999999999998754 25
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccc
Q psy17125 84 LSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTAL 163 (1281)
Q Consensus 84 ~~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~l 163 (1281)
+++++++++|++|++++++.|+++|++||+++||+| +|.|+||.|.++++++|.+|+++|+||++.++|+|||.|+|+|
T Consensus 117 ~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~-~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaL 195 (912)
T PRK05743 117 LSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDN-PYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSAL 195 (912)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCC-CcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCc
Confidence 789999999999999999999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHH
Q psy17125 164 AESELEYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVE 243 (1281)
Q Consensus 164 ad~ev~~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~ 243 (1281)
||+||+|++ +.+.++||+|++.+.. +.....+.+++||||||||||||+||+|||+.+|++++++++.||+++++++
T Consensus 196 ad~Evey~~-~~s~~~yv~f~l~~~~--~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~ 272 (912)
T PRK05743 196 AEAEVEYHD-KTSPSIYVAFPVVDGK--LAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVE 272 (912)
T ss_pred hhhHhhccc-ccCceEEEEEEecCcc--hhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHH
Confidence 999999997 8999999999996521 1000034699999999999999999999999999999988888889887765
Q ss_pred hhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceecc
Q psy17125 244 SLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLIT 323 (1281)
Q Consensus 244 ~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~ 323 (1281)
++..+.
T Consensus 273 ~~~~~~-------------------------------------------------------------------------- 278 (912)
T PRK05743 273 SVLERF-------------------------------------------------------------------------- 278 (912)
T ss_pred HHHHhh--------------------------------------------------------------------------
Confidence 321100
Q ss_pred CCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhc
Q psy17125 324 NQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVG 403 (1281)
Q Consensus 324 ~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~ 403 (1281)
T Consensus 279 -------------------------------------------------------------------------------- 278 (912)
T PRK05743 279 -------------------------------------------------------------------------------- 278 (912)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccc
Q psy17125 404 NILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYS 483 (1281)
Q Consensus 404 ~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~ 483 (1281)
T Consensus 279 -------------------------------------------------------------------------------- 278 (912)
T PRK05743 279 -------------------------------------------------------------------------------- 278 (912)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCceEEeehhhHHhHHhhccC-CeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCCh
Q psy17125 484 VASVKGANVIVAKCLVENLKWTFQT-DIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQ 562 (1281)
Q Consensus 484 ~~~~~~~~~i~a~~~~~~~~~~~~~-~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~ 562 (1281)
+. +.+++++++|++|+|+++.||+++.. +||++++||++++|||+||+|||||+
T Consensus 279 -----------------------~~~~~~~~~~~~G~~l~g~~~~~Pl~~~~--~pvi~~~~V~~~~GTG~Vh~aPahg~ 333 (912)
T PRK05743 279 -----------------------GWEDYEVLATFKGKELEGLVAQHPFYDRD--SPVILGDHVTLDAGTGLVHTAPGHGE 333 (912)
T ss_pred -----------------------CCcceEEEEEechHhhcCCEEECCCCCCe--eeEeCCCccCCCCCcCeEEeCCCCCH
Confidence 00 23455677899999999999999765 99999999999999999999999999
Q ss_pred hHHHHHHHcCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCCceEEcccc
Q psy17125 563 DDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKPVILKASQ 640 (1281)
Q Consensus 563 ~Dy~~~~~~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~v~~~~~~ 640 (1281)
+||+++++||||++++||++|+|++.+ ++|.|++++ +|+++|++.|++ .+++.+.+.|++|+|||||+||++++++
T Consensus 334 ~Dy~~~~~~~L~~~~~vd~~G~~~~~~-~~~~Gl~v~-ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~ 411 (912)
T PRK05743 334 DDYVVGQKYGLEVLNPVDDDGRYTEEA-PLFAGLFVF-KANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATP 411 (912)
T ss_pred HHHHHHHHcCCCcccccCCCceEecCC-cccCCcCHH-HhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecC
Confidence 999999999999999999999999887 469999997 799999999998 4788899999999999999999999999
Q ss_pred ccccChhh--HHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec--CCeEEechhhHHHHHhhh
Q psy17125 641 QWFIDTER--IKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD--GDTIIVNEANIKHFCTLI 716 (1281)
Q Consensus 641 qWf~~~~~--~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~--~~~i~v~~~~~~~i~~~~ 716 (1281)
|||+++++ +++++++++++++|+|+..++++.+||++++||||||||+||+|||+|+| ++.+++..+++.++.+.+
T Consensus 412 QWFi~~~~~~~k~~~l~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~ 491 (912)
T PRK05743 412 QWFISMDKKGLREQALKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLF 491 (912)
T ss_pred cccEeCChHHHHHHHHHHHcccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHH
Confidence 99999997 99999999999999999999999999999999999999999999999998 577888777777787777
Q ss_pred hhcCCCCccCcCccccccccccccccccccccccccccCCcchhhhccC-----CCccceeeccceeeehhhHHHHHHHH
Q psy17125 717 DEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKD-----KPAHVYMEGMDQINGWFMSSLLTSVA 791 (1281)
Q Consensus 717 ~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~~-----~p~dl~~~G~Dii~~wf~~~l~~~~~ 791 (1281)
+..|.+.||+..+.++++. ++..+.+++|+||+|||||++|+.+++. ||+|+|++|+||+||||+++++.+++
T Consensus 492 ~~~g~~~W~~~~~~~~~~~--~~~~~~~~~DvlDvWfdSg~s~~~~~~~~~~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~ 569 (912)
T PRK05743 492 EKEGIDAWFELDAKELLPD--EADEYEKETDILDVWFDSGSSHAAVLEQRPELGYPADLYLEGSDQHRGWFQSSLLTSVA 569 (912)
T ss_pred HhhCCccccccCHHHhcCC--cccCEEECCchhhhhhhhCCCHHHHhcCccccCCCceEEEecccccchHHHHHHHHHHH
Confidence 8889999998887777662 4567899999999999999999887642 89999999999999999999999999
Q ss_pred hcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHH
Q psy17125 792 LKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVA 871 (1281)
Q Consensus 792 l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~ 871 (1281)
+.+..||++|++|||++|.+|+|||||+||+|+|.++++ +||||++|||++
T Consensus 570 ~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~-----------------------------~yGaDalR~~ll 620 (912)
T PRK05743 570 TRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIK-----------------------------KYGADILRLWVA 620 (912)
T ss_pred hcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHH-----------------------------hcChHHHHHHHH
Confidence 999999999999999999999999999999999999999 999999999999
Q ss_pred hcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCC----CCcCcHHHHHHHHHHHHHHHHHHHHHhhccHH
Q psy17125 872 AHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSEST----GSISRYVDVYMLKRLCEFQNTMDTLYGEFQYA 947 (1281)
Q Consensus 872 ~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~----~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~ 947 (1281)
+ ++.++|++|+.+.+.+..+++++|+|++|++++++.++.+.. ...+...|+|++++++++++++.++|++|+|+
T Consensus 621 ~-~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~ 699 (912)
T PRK05743 621 S-TDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFH 699 (912)
T ss_pred h-cCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 8 556899999999999988999999999999999887654321 12356789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCCCCcccc
Q psy17125 948 RASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFC 1027 (1281)
Q Consensus 948 ~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~s~~ 1027 (1281)
+|++.+++|+++++|++|++..|+|+|+...++..|++++.+++.+++.+++||+|||||+|||+|++|+... ..++
T Consensus 700 ~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~~~---~~sv 776 (912)
T PRK05743 700 KVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPGER---EESV 776 (912)
T ss_pred HHHHHHHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcccCC---CCce
Confidence 9999999999889999999999999998765556677788899999999999999999999999999996321 2356
Q ss_pred cccccccccc
Q psy17125 1028 HFKVYLQYSG 1037 (1281)
Q Consensus 1028 ~~~~~p~~~~ 1037 (1281)
+.+.||.+++
T Consensus 777 ~~~~wP~~~~ 786 (912)
T PRK05743 777 FLEEWPEVPE 786 (912)
T ss_pred EEecCCCCcc
Confidence 6778887653
No 5
>KOG0433|consensus
Probab=100.00 E-value=7.5e-140 Score=1209.14 Aligned_cols=726 Identities=46% Similarity=0.816 Sum_probs=667.9
Q ss_pred HHHHHHHHcCCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHH-HHHHHhcc---c
Q psy17125 7 LYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIE-LKAITSKD---K 82 (1281)
Q Consensus 7 ~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie-~~a~~~~~---~ 82 (1281)
.|.|++.+..+++.|.+++ +||.||||||+|++++||+.||+-++|++|++++||||||+||| .+|.+... +
T Consensus 47 ~~~~~qls~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~ 122 (937)
T KOG0433|consen 47 EILSSQLSDQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEG 122 (937)
T ss_pred HHHHHHHhhccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccc
Confidence 4577777767888999999 99999999999999999999999999999999999999999999 67777654 3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcccc
Q psy17125 83 LLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTA 162 (1281)
Q Consensus 83 ~~~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~ 162 (1281)
.++|.||+++++.||.+.+++|++.|++|||..||. ++|.|++|.|+..+.++|.+|++||||||+.+||||+|+++||
T Consensus 123 ~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~-n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTA 201 (937)
T KOG0433|consen 123 SRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWE-NPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTA 201 (937)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCC-CceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhh
Confidence 568999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCcCccEEEEEEeccCccc--cccC-CCCeEEEEEeCCCCcccccceEEEcCCCceEEEEec----CceE
Q psy17125 163 LAESELEYKPDHVSKSIYLKIKLNQVPAH--LLEG-ATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVK----GANV 235 (1281)
Q Consensus 163 lad~ev~~~~~~~~~~~~vkf~l~~~~~~--~~~~-~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~----~~~~ 235 (1281)
||++|+||.+.++|+|+|++|||...... ..+. ...+|.+||||||||||+|.||++||+.+|.+++.+ ++.
T Consensus 202 LAEaELEYn~nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~- 280 (937)
T KOG0433|consen 202 LAESELEYNDNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTF- 280 (937)
T ss_pred hhhhhccCCcCCcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceE-
Confidence 99999999999999999999999875432 2222 345899999999999999999999999999998643 222
Q ss_pred EeehhhHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcC
Q psy17125 236 IVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEK 315 (1281)
Q Consensus 236 i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~ 315 (1281)
T Consensus 281 -------------------------------------------------------------------------------- 280 (937)
T KOG0433|consen 281 -------------------------------------------------------------------------------- 280 (937)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhh
Q psy17125 316 IPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPE 395 (1281)
Q Consensus 316 l~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e 395 (1281)
T Consensus 281 -------------------------------------------------------------------------------- 280 (937)
T KOG0433|consen 281 -------------------------------------------------------------------------------- 280 (937)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccc
Q psy17125 396 ALVCKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIA 475 (1281)
Q Consensus 396 ~~~~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~ 475 (1281)
T Consensus 281 -------------------------------------------------------------------------------- 280 (937)
T KOG0433|consen 281 -------------------------------------------------------------------------------- 280 (937)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccceecccCceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEe
Q psy17125 476 FNPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVH 555 (1281)
Q Consensus 476 v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~ 555 (1281)
|+||..+++++....+...+++++++|..|+|.+|.||+.+. ...|++.++||+++.|||+||
T Consensus 281 ----------------ylvas~L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~-~~~P~l~g~hVT~~~GTGLVH 343 (937)
T KOG0433|consen 281 ----------------YLVASKLLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLHNE-LGLPILEGPHVTDTVGTGLVH 343 (937)
T ss_pred ----------------EEEccchhhhhhhhcCcceeeeeecchhhccCceecCcCccc-cCCccccccceecCcccceee
Confidence 334445555555555556678889999999999999999654 459999999999999999999
Q ss_pred cCCCCChhHHHHHHHcCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhccccccccccccccCcccCCCCceE
Q psy17125 556 CAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVI 635 (1281)
Q Consensus 556 ~~PaH~~~Dy~~~~~~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~ 635 (1281)
+|||||++||.+|.++|||+.++||+.|+|+.++++++.|+.|++++++.|+.+|...+++.++|.|+||++||+++|++
T Consensus 344 TAP~HG~eDYlv~l~~~l~~~s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvI 423 (937)
T KOG0433|consen 344 TAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVI 423 (937)
T ss_pred cCCCCChHHHHHHhhcCCCcccccCCCCceecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccccChhhHHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec--CCeEEechhhHHHHH
Q psy17125 636 LKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD--GDTIIVNEANIKHFC 713 (1281)
Q Consensus 636 ~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~--~~~i~v~~~~~~~i~ 713 (1281)
+|+++|||+++++++..+.++++++++.|....+++..++..+++|||||||.||+|||++|+ .+...+...++.|+.
T Consensus 424 iRAseQWFi~~e~~k~~A~~al~~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~ 503 (937)
T KOG0433|consen 424 IRASEQWFIDVEEIKKRASMALDDVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAK 503 (937)
T ss_pred EecchhheeeHHhhhhHHHHHHhhceeCCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 556778888999999
Q ss_pred hhhhhcCCCCccCcCccccccccc------cccccccccccccccccCCcchhhhccC---CCccceeeccceeeehhhH
Q psy17125 714 TLIDEHGPDFWWSLSVEQLLNTSD------VNSNVTKSNDILDIWFDSGISWSHVLKD---KPAHVYMEGMDQINGWFMS 784 (1281)
Q Consensus 714 ~~~~~~g~d~~~~~~~~~l~~~~~------~~~~~~~~~dvlD~WFdS~l~w~~~l~~---~p~dl~~~G~Dii~~wf~~ 784 (1281)
..++..|+|.||..+.+++++... .+.++.+++|+||+|||||.+|..+++. .++|+|.+|.||+++||++
T Consensus 504 ~~~eqeGsD~Ww~~~~eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~~~~~~~aDv~LEG~DQ~rGWFQS 583 (937)
T KOG0433|consen 504 LTREQEGSDVWWEIDVEELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVLDNEREHVADVYLEGVDQFRGWFQS 583 (937)
T ss_pred HHHHHhCCcceEeCChhHhCcHhhhcccchhHHHhccCCceeeeEecCCCcceeecCCCCCcceeeEEecchhcchHHHH
Confidence 999999999999999999888654 3567889999999999999999999873 7899999999999999999
Q ss_pred HHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchh
Q psy17125 785 SLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVD 864 (1281)
Q Consensus 785 ~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaD 864 (1281)
.++++++..++.||+.|++|||.+|++|.|||||+||||+|..+++|.. +.|.||||
T Consensus 584 sLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~-----------------------k~payGaD 640 (937)
T KOG0433|consen 584 SLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSL-----------------------KQPAYGAD 640 (937)
T ss_pred HHHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcc-----------------------cCCCcccc
Confidence 9999999999999999999999999999999999999999999999621 24589999
Q ss_pred HHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCC----CCcCcHHHHHHHHHHHHHHHHHHHH
Q psy17125 865 VLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSEST----GSISRYVDVYMLKRLCEFQNTMDTL 940 (1281)
Q Consensus 865 alR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~----~~~~~~~d~~il~~l~~~~~~v~~~ 940 (1281)
+||||++... ...|+..+...++.+.+.+.|++|++||+++++.++...+ ...+..+|++++.+|.++++++.+.
T Consensus 641 ~LR~WVA~~~-~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~ 719 (937)
T KOG0433|consen 641 GLRFWVAGSE-NTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIEL 719 (937)
T ss_pred ceeeeeeccc-ccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999544 4789999999999999999999999999999999987653 3456778999999999999999999
Q ss_pred HhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCC
Q psy17125 941 YGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSR 1019 (1281)
Q Consensus 941 ~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~ 1019 (1281)
|++|+|+++++.+..|+.++++++|++.+|+|+||+..++..|++++++|..++..+++.++||+||++||+||.|+..
T Consensus 720 Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~ 798 (937)
T KOG0433|consen 720 YNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGS 798 (937)
T ss_pred HHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999943
No 6
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-140 Score=1280.98 Aligned_cols=657 Identities=28% Similarity=0.481 Sum_probs=593.0
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhc---c---cCCCHHHHHHH
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK---D---KLLSPLDIRKK 92 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~---~---~~~~~~e~~~~ 92 (1281)
++|+|..||||+||.||||||++.++.|+++||+||+||+|+|++||||+|+|+|.++++++ | .++++++++++
T Consensus 33 ~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~ 112 (877)
T COG0525 33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKK 112 (877)
T ss_pred CCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHH
Confidence 66999999999999999999999999999999999999999999999999999999888887 4 24678999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCC
Q psy17125 93 AKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKP 172 (1281)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~ 172 (1281)
|.+|.+++...+++|+++||+|+||+| .++|+||.+.+.|+.+|.+||++|+|||+.++|+|||.|+|||||.||+|++
T Consensus 113 ~weWk~e~~~~I~~Q~~rLG~S~DWsr-E~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e 191 (877)
T COG0525 113 CWEWKEESGGTIREQLRRLGVSVDWSR-ERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKE 191 (877)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccccc-ccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCccccchhhhhhccce
Confidence 999999999999999999999999996 9999999999999999999999999999999999999999999999999998
Q ss_pred CCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCC
Q psy17125 173 DHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTD 252 (1281)
Q Consensus 173 ~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~ 252 (1281)
..+..+||+|++.+ .+-+++|+|||||||+|++||+|||+++
T Consensus 192 -~~g~L~~i~y~l~~---------~~~~i~VATTRPEtmlgdtAVaVhP~De---------------------------- 233 (877)
T COG0525 192 -VEGKLYYIKYPLAD---------GDGYLVVATTRPETLLGDTAVAVHPDDE---------------------------- 233 (877)
T ss_pred -eeeeEEEEEEecCC---------CCceEEEEecCccccccceEEEECCCCh----------------------------
Confidence 78888999999875 2238888999999999998888888643
Q ss_pred ceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCC
Q psy17125 253 IEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDA 332 (1281)
Q Consensus 253 ~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~ 332 (1281)
T Consensus 234 -------------------------------------------------------------------------------- 233 (877)
T COG0525 234 -------------------------------------------------------------------------------- 233 (877)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccc
Q psy17125 333 GPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGIT 412 (1281)
Q Consensus 333 ~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~ 412 (1281)
T Consensus 234 -------------------------------------------------------------------------------- 233 (877)
T COG0525 234 -------------------------------------------------------------------------------- 233 (877)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceE
Q psy17125 413 HDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANV 492 (1281)
Q Consensus 413 ~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~ 492 (1281)
T Consensus 234 -------------------------------------------------------------------------------- 233 (877)
T COG0525 234 -------------------------------------------------------------------------------- 233 (877)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcC
Q psy17125 493 IVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEK 572 (1281)
Q Consensus 493 i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~ 572 (1281)
+.++|+|+.+.+|+.++. |||+.++||++++|||+||++||||++||+++++|+
T Consensus 234 ------------------------RYk~LvGk~v~lPl~~r~--IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~ 287 (877)
T COG0525 234 ------------------------RYKHLVGKEVILPLVGRE--IPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHN 287 (877)
T ss_pred ------------------------hhHhhcCCEEecCCCCCe--eeeecCcccCCcCCCceEEecCCCCchhhhhhhcCC
Confidence 011356778888998865 999999999999999999999999999999999999
Q ss_pred CCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCCceEEccccccccChhhHH
Q psy17125 573 IPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIK 650 (1281)
Q Consensus 573 lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~ 650 (1281)
||+++++|.+|+++++++.+|+|++++ +||++|++.|++ .+++.+.+.|++|+|+|||+|+++.+++|||+++..++
T Consensus 288 Lp~i~i~d~dG~in~~~~~~~~Gl~r~-eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la 366 (877)
T COG0525 288 LPLINIIDEDGRINEEAAGEFAGLDRF-EARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELA 366 (877)
T ss_pred CCceEEECCCCeeccCCccccCCCcHH-HHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhH
Confidence 999999999999998887689999998 899999999999 57788999999999999999999999999999999999
Q ss_pred HHHHHhhh--cccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec--CCeEEechhhHHHHHhhhhhcCCCCccC
Q psy17125 651 PEALACLE--EVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD--GDTIIVNEANIKHFCTLIDEHGPDFWWS 726 (1281)
Q Consensus 651 ~~~~e~~~--~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~--~~~i~v~~~~~~~i~~~~~~~g~d~~~~ 726 (1281)
+.+++..+ +++|+|+.+++++.+|+++++|||||||++||||||+||| |+.++|..+ .+.-.
T Consensus 367 ~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~-~~~~~------------- 432 (877)
T COG0525 367 KKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEE-EPEDP------------- 432 (877)
T ss_pred HHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCCcEEeCCc-cccch-------------
Confidence 99999999 8899999999999999999999999999999999999999 788888754 11000
Q ss_pred cCccccccccccccccccccccccccccCCcchhhhcc---------C-CCccceeeccceeeehhhHHHHHHHHhcCCC
Q psy17125 727 LSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLK---------D-KPAHVYMEGMDQINGWFMSSLLTSVALKHTA 796 (1281)
Q Consensus 727 ~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~---------~-~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~ 796 (1281)
.. ...+....+.+++|||||||+|++++.+.++ . ||.|++++|.|||+||+.+|++++..+.++.
T Consensus 433 --~~---~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~~~~~~~~ 507 (877)
T COG0525 433 --AA---AEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEV 507 (877)
T ss_pred --hh---hccCchhcccCCcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHHHHHHHHHHhcCCC
Confidence 00 0011114578999999999999986444432 1 5999999999999999999999999999999
Q ss_pred CCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCC
Q psy17125 797 PFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASK 876 (1281)
Q Consensus 797 Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~ 876 (1281)
||+.|++||+|+|.+|+|||||+||||||.++|+ +||||||||+|++.+.+
T Consensus 508 PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~-----------------------------~yGaDAlRf~la~~~~~ 558 (877)
T COG0525 508 PFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVID-----------------------------KYGADALRFTLASLASP 558 (877)
T ss_pred CccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHH-----------------------------HhChHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999 99999999999999889
Q ss_pred CCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCC--CcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy17125 877 DPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTG--SISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLL 954 (1281)
Q Consensus 877 ~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~--~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~ 954 (1281)
++|++|+.+.++++++|+||+||+.||++.+..+...... ...+.+|+||+++|+++++.++++|++|+|..|.+.++
T Consensus 559 G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly 638 (877)
T COG0525 559 GRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALY 638 (877)
T ss_pred CcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999999999999999999987755432211 22368999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCCCCccccccccccc
Q psy17125 955 NFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYLQ 1034 (1281)
Q Consensus 955 ~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~p~ 1034 (1281)
+|+|+++||+|+|++|++++.+ +..+.++..+|..+++.+++||||||||+|||+||++... .+++.+.||.
T Consensus 639 ~F~W~~fcD~YlEl~K~~l~~~---~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~-----~si~~~~~P~ 710 (877)
T COG0525 639 EFIWNDFCDWYLELAKPRLYGG---EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT-----ESIHLASWPE 710 (877)
T ss_pred HHhHHHHHHHHHHHhhhhhcCc---HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC-----CeEEeccCCC
Confidence 9999999999999999999876 4555678899999999999999999999999999999654 4577888998
Q ss_pred ccc
Q psy17125 1035 YSG 1037 (1281)
Q Consensus 1035 ~~~ 1037 (1281)
+++
T Consensus 711 ~~~ 713 (877)
T COG0525 711 VDE 713 (877)
T ss_pred cch
Confidence 853
No 7
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.8e-137 Score=1336.41 Aligned_cols=734 Identities=25% Similarity=0.466 Sum_probs=625.2
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhccc-------CCCHHH
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDK-------LLSPLD 88 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~-------~~~~~e 88 (1281)
+++|+|++++||||+||.|||||++|++++|+++||+||+||+|+|++||||||+|||.+++++.|. .++.++
T Consensus 35 ~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~ 114 (1159)
T PLN02882 35 EGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDK 114 (1159)
T ss_pred CCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999888662 267889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcccccccccc
Q psy17125 89 IRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESEL 168 (1281)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev 168 (1281)
++++|++|+.++++.|++++++||+++||+| +|.|+|+.|.+.++|+|.+|+++|+||++.++|+|||.|+|+||++|+
T Consensus 115 f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~-~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~ 193 (1159)
T PLN02882 115 YNEECRSIVTRYSKEWEKTVTRTGRWIDFEN-DYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEA 193 (1159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcEEECCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEeecCCCCCCcchhhh
Confidence 9999999999999999999999999999995 999999999999999999999999999999999999999999998888
Q ss_pred --ccCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEe--cCceEEeehhhHHh
Q psy17125 169 --EYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASV--KGANVIVAKCLVES 244 (1281)
Q Consensus 169 --~~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~--~~~~~i~~~~~~~~ 244 (1281)
+|++ +.++++||+|++.+. ..+.+++||||||||||||+||||||+.+|++++. +|+.||+|+++++.
T Consensus 194 ~~~Yk~-~~~~si~v~F~l~~~-------~~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~ 265 (1159)
T PLN02882 194 GLNYKD-VSDPAVMVSFPIVGD-------PDNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSA 265 (1159)
T ss_pred hhhccc-CCCcEEEEEEEecCC-------CCCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHH
Confidence 7887 899999999998642 12369999999999999999999999999999986 47899999999986
Q ss_pred hhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccC
Q psy17125 245 LKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITN 324 (1281)
Q Consensus 245 ~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~ 324 (1281)
+....... -+|... ..
T Consensus 266 ~~~~~~~~------~~~~~~--------~~-------------------------------------------------- 281 (1159)
T PLN02882 266 LPTAKPKS------KKGSKP--------EN-------------------------------------------------- 281 (1159)
T ss_pred HHhhhhcc------cccccc--------cc--------------------------------------------------
Confidence 54322100 000000 00
Q ss_pred CCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcc
Q psy17125 325 QGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGN 404 (1281)
Q Consensus 325 ~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~ 404 (1281)
|
T Consensus 282 -----------------------------------------------------------~-------------------- 282 (1159)
T PLN02882 282 -----------------------------------------------------------A-------------------- 282 (1159)
T ss_pred -----------------------------------------------------------c--------------------
Confidence 0
Q ss_pred cccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccce
Q psy17125 405 ILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSV 484 (1281)
Q Consensus 405 ~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~ 484 (1281)
T Consensus 283 -------------------------------------------------------------------------------- 282 (1159)
T PLN02882 283 -------------------------------------------------------------------------------- 282 (1159)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccCceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCC--cc--CcceeeeeCCccccCCCCceEecCCCC
Q psy17125 485 ASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPIN--KE--QRDLKLLPAGFVSSSKGTGLVHCAPAH 560 (1281)
Q Consensus 485 ~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~--~~--~~~ipIi~~~~V~~~~GTG~V~~~PaH 560 (1281)
. .+++++++++|++|+|++|.||+. .. ...+||++++||++++|||+||+||||
T Consensus 283 ---------------------~-~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPah 340 (1159)
T PLN02882 283 ---------------------A-EGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAF 340 (1159)
T ss_pred ---------------------c-cccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCCC
Confidence 0 012344555666666666655541 00 113899999999999999999999999
Q ss_pred ChhHHHHHHHcCC-----CeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCCc
Q psy17125 561 GQDDFLLALAEKI-----PVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKP 633 (1281)
Q Consensus 561 ~~~Dy~~~~~~~l-----pi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~ 633 (1281)
|++||++|++||| |++++||++|+|+++++ .|.|+.++ +|++.|++.|++ .+++.+.+.|+||+|||||+|
T Consensus 341 G~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~-~~~G~~v~-eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tp 418 (1159)
T PLN02882 341 GEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVT-DFSGRYVK-DADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTP 418 (1159)
T ss_pred ChhHHHHHHHcCCCccccCccceECCCceEccCCc-ccCCCCHH-HhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCE
Confidence 9999999999999 79999999999998874 69999997 799999999998 578889999999999999999
Q ss_pred eEEccccccccChhhHHHHHHHhhhcccccchhHH-HHHHHHHHcCCCcccccccCCCccceeEec-CCeEEechhhHHH
Q psy17125 634 VILKASQQWFIDTERIKPEALACLEEVNFVPESAK-KTLRDQIAQRPYWCISRQRVWGVPIPVFYD-GDTIIVNEANIKH 711 (1281)
Q Consensus 634 v~~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r-~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~-~~~i~v~~~~~~~ 711 (1281)
+++++++|||++++++++++++..++++|+|++.+ +++.+||++++||||||||+||+|||+|+| ++...+...++++
T Consensus 419 li~~a~~qWFi~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s~~e 498 (1159)
T PLN02882 419 LIYRAVPSWFVKVEEIKDRLLENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAE 498 (1159)
T ss_pred EEEEecceeEEEcHHHHHHHHHhhCCcEEECCcchhhHHHHHHhcCcccceeeccccCCccceEEeCCCCeEEecCcHHH
Confidence 99999999999999999999999999999999994 899999999999999999999999999998 3333333346677
Q ss_pred HHhhhhhcCCCCccCcCcccc-cccccc--ccccccccccccccccCCcchhhhcc-----------CCCccceeeccce
Q psy17125 712 FCTLIDEHGPDFWWSLSVEQL-LNTSDV--NSNVTKSNDILDIWFDSGISWSHVLK-----------DKPAHVYMEGMDQ 777 (1281)
Q Consensus 712 i~~~~~~~g~d~~~~~~~~~l-~~~~~~--~~~~~~~~dvlD~WFdS~l~w~~~l~-----------~~p~dl~~~G~Di 777 (1281)
+.......+.|.|+. .++++ .+..++ ...+.|++|+||+|||||++|+..++ .||+|++.+|+||
T Consensus 499 l~~~~~~~~~dlh~~-~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~~~~f~~~~PaD~i~eG~Dq 577 (1159)
T PLN02882 499 LEKLSGVKVTDLHRH-FIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENKELFEKNFPADFVAEGLDQ 577 (1159)
T ss_pred HHHHhCCchhhcccc-chhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccChhHhhccCCceEEEEecch
Confidence 766555556677764 45555 232221 13689999999999999998776652 1899999999999
Q ss_pred eeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccC
Q psy17125 778 INGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKK 857 (1281)
Q Consensus 778 i~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~ 857 (1281)
+|+||++++++++++++..||++|++|||++|.+|+|||||+||+|+|.++++
T Consensus 578 ~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~--------------------------- 630 (1159)
T PLN02882 578 TRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVID--------------------------- 630 (1159)
T ss_pred hhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHhcCCC-CCccccCcchhccc-hHHHHHHHHHHHHHHHhhcC--------CCCCCC----CcCcHHH
Q psy17125 858 LPAYGVDVLRWWVAAHASK-DPTVPIGKNILNSS-QDDVQKIRSSLRYLLGVLHN--------HSESTG----SISRYVD 923 (1281)
Q Consensus 858 i~~yGaDalR~~l~~~~~~-~~d~~f~~~~l~~~-~~~~~kl~n~~r~~~~~l~~--------~~~~~~----~~~~~~d 923 (1281)
+||||+|||||+++... ++|++|+.+.+.+. +++++++||+++|++.++.+ +.+... .....+|
T Consensus 631 --~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D 708 (1159)
T PLN02882 631 --KYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLD 708 (1159)
T ss_pred --HhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHH
Confidence 99999999999977653 68899999888765 56999999999999877644 222110 1235789
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhcc
Q psy17125 924 VYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAP 1003 (1281)
Q Consensus 924 ~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP 1003 (1281)
+|++++++++++.+.++|++|+|++|++.+++|+ ++++|+|++..|+|++.+. ++.++.+++.+++++++.+++||+|
T Consensus 709 ~wIls~l~~li~~v~~~me~y~f~~A~~~I~~Fv-~~lsN~YIe~~Kprl~~~~-~~~~~~~al~tL~~vL~~l~~LLaP 786 (1159)
T PLN02882 709 RWINSATQSLVKFVREEMGAYRLYTVVPYLVKFI-DNLTNIYVRFNRKRLKGRT-GEEDCRTALSTLYNVLLTSCKVMAP 786 (1159)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHhHHHHHhCCHhhhCCC-ChHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999 5799999999999998764 3456778899999999999999999
Q ss_pred ccCccHHHHHhhCCCCCCCCcccccccccccccc
Q psy17125 1004 IMPHLAEEVYSHLPSRQGTFSSFCHFKVYLQYSG 1037 (1281)
Q Consensus 1004 ~~P~laeel~~~L~~~~~~~~s~~~~~~~p~~~~ 1037 (1281)
||||+||++|++|+.....-..++|...||.+++
T Consensus 787 fmPf~aEeI~q~L~~~~~~~~~SVh~~~~P~~~~ 820 (1159)
T PLN02882 787 FTPFFTEVLYQNLRKVLPGSEESIHYCSFPQVDE 820 (1159)
T ss_pred hhhHHHHHHHHHhccccCCCCCceeecCCCCcch
Confidence 9999999999999752111124678888998754
No 8
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=1.2e-136 Score=1324.30 Aligned_cols=736 Identities=27% Similarity=0.484 Sum_probs=621.2
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhccc-------CCCHHH
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDK-------LLSPLD 88 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~-------~~~~~e 88 (1281)
+++++|+|++|||||||.||+|||++++++|+++||+||+||+|++++||||||+|||.++++++|. ++..++
T Consensus 99 ~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~ 178 (1205)
T PTZ00427 99 KNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDV 178 (1205)
T ss_pred CCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999987751 367889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcccccccccc
Q psy17125 89 IRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESEL 168 (1281)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev 168 (1281)
++++|++|+.++.+.+++++++||+++||+| +|+|+|+.|.+.++|+|.+|+++|+||++.++|+|||.|+|+||++||
T Consensus 179 f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~-~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV 257 (1205)
T PTZ00427 179 YNEKCRGIVLKYSNEWVKTVERIGRWIDFKN-DYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFEL 257 (1205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcEEecCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeccCCCCCCchhHHHh
Confidence 9999999999999999999999999999995 999999999999999999999999999999999999999999999999
Q ss_pred --ccCCCCcCccEEEEEEeccCc-c---------------cc---c------c---C----------CCCeEEEEEeCCC
Q psy17125 169 --EYKPDHVSKSIYLKIKLNQVP-A---------------HL---L------E---G----------ATDLHALIWTTTP 208 (1281)
Q Consensus 169 --~~~~~~~~~~~~vkf~l~~~~-~---------------~~---~------~---~----------~~~~~~~i~Tt~P 208 (1281)
+|++ +.++++||+|++.+.. . .+ . + + ..+.+++||||||
T Consensus 258 ~~~ykd-~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtP 336 (1205)
T PTZ00427 258 NLNYKD-TPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTP 336 (1205)
T ss_pred hccccc-ccCceEEEEeecccccccccccccccccccccccceeeccccccccccccccccccccccCCCCEEEEEECCc
Confidence 7887 9999999999997520 0 00 0 0 0 1246899999999
Q ss_pred CcccccceEEEcCCCceEEEEe--cCceEEeehhhHHhhhhhcc---CCceEeecccCCcccccccccCCcccCcceeEe
Q psy17125 209 WSLPANQFIAFNPALEYSVASV--KGANVIVAKCLVESLKWTFQ---TDIEVVCDFPGQYLQDITYIHPINKEQRDLKLL 283 (1281)
Q Consensus 209 ~tl~~~~ai~v~p~~~Y~~~~~--~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~ 283 (1281)
||||||+||||||+.+|+.++. +++.+|+++++++.+..... .+++++.+++|++|+|.+|.||+... +
T Consensus 337 wTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~----~-- 410 (1205)
T PTZ00427 337 WTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNF----Y-- 410 (1205)
T ss_pred hhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCcccc----c--
Confidence 9999999999999999999986 67899999999886544332 35677777777777777777554210 0
Q ss_pred eCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccc
Q psy17125 284 PAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENY 363 (1281)
Q Consensus 284 ~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~ 363 (1281)
T Consensus 411 -------------------------------------------------------------------------------- 410 (1205)
T PTZ00427 411 -------------------------------------------------------------------------------- 410 (1205)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccccCCcccccccccccccCCCCCcceeehhhcc
Q psy17125 364 QHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLN 443 (1281)
Q Consensus 364 ~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~ 443 (1281)
T Consensus 411 -------------------------------------------------------------------------------- 410 (1205)
T PTZ00427 411 -------------------------------------------------------------------------------- 410 (1205)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEeehhhHHhHHhhccCCeeEeccccccccCC
Q psy17125 444 QVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQD 523 (1281)
Q Consensus 444 ~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g 523 (1281)
T Consensus 411 -------------------------------------------------------------------------------- 410 (1205)
T PTZ00427 411 -------------------------------------------------------------------------------- 410 (1205)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCC--C----eecccCCCCccCCCCCCCCCCce
Q psy17125 524 ITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKI--P----VLNLITNQGKYSPDAGPGLEGLN 597 (1281)
Q Consensus 524 ~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~l--p----i~~vid~~G~~~~~~~~~~~G~~ 597 (1281)
..+|+.++ .+||++++||++++|||+||+|||||++||++|++||| | ++++||++|+|+++++ .|.|+.
T Consensus 411 --~~~~~~~~--~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~-~~~G~~ 485 (1205)
T PTZ00427 411 --EKYNFKER--AYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVE-EVQNLY 485 (1205)
T ss_pred --cccccCCc--eeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCc-ccCCCC
Confidence 00001111 28999999999999999999999999999999999999 2 7889999999998864 699999
Q ss_pred eccccchhHHhhhcc--ccccccccccccCcccCCCCceEEccccccccChhhHHHHHHHhhhcccccchhH-HHHHHHH
Q psy17125 598 ILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESA-KKTLRDQ 674 (1281)
Q Consensus 598 v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~-r~~~~~~ 674 (1281)
++ +|++.|++.|++ .+++.+.+.|++|+|||||+|+++++++|||++++++++++++..++++|+|++. ++++.+|
T Consensus 486 v~-dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~w 564 (1205)
T PTZ00427 486 IK-EADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIPAHIKEKKFHNW 564 (1205)
T ss_pred HH-HhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEeCchhhHhHHHHH
Confidence 97 789999999998 5788899999999999999999999999999999999999999999999999999 5899999
Q ss_pred HHcCCCcccccccCCCccceeEecC-CeEEechhhHHHHHhhhhhcCC-CCccCcCccc--cccc-cccccccccccccc
Q psy17125 675 IAQRPYWCISRQRVWGVPIPVFYDG-DTIIVNEANIKHFCTLIDEHGP-DFWWSLSVEQ--LLNT-SDVNSNVTKSNDIL 749 (1281)
Q Consensus 675 l~~l~DW~ISRqr~WG~pIP~~~~~-~~i~v~~~~~~~i~~~~~~~g~-d~~~~~~~~~--l~~~-~~~~~~~~~~~dvl 749 (1281)
|++++||||||||+||+|||+|+|+ ...++....++++.......+. +.|+. .++. +.+. ......+.|++|||
T Consensus 565 l~n~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~~~~~~~~~dlh~~-~iD~~~~~~~~g~~~~~~~r~~DVl 643 (1205)
T PTZ00427 565 IKDAKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEELSGVKNINDLHRH-FIDHIEIKNPKGKTYPKLKRIPEVF 643 (1205)
T ss_pred HhcCccceeeeccccCccceeEEcCCCCeEeccCCHHHHHHHhccccchhhccc-ccChhhccCCccccccceeecCceE
Confidence 9999999999999999999999993 3334444555555443221121 23322 1111 1111 11112588999999
Q ss_pred cccccCCcchhhhcc------------CCCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccc
Q psy17125 750 DIWFDSGISWSHVLK------------DKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSK 817 (1281)
Q Consensus 750 D~WFdS~l~w~~~l~------------~~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSK 817 (1281)
|+|||||++|+..++ .||+|++.+|.||+||||+++++.+++++++.||++|++||||+|.+|+||||
T Consensus 644 D~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSK 723 (1205)
T PTZ00427 644 DCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSK 723 (1205)
T ss_pred EEEEeCCCChHHHhCCCcccchhhHhccCCceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCccc
Confidence 999999997665442 18999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCC-CCCccccCcchhc-cchHHHH
Q psy17125 818 SVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHAS-KDPTVPIGKNILN-SSQDDVQ 895 (1281)
Q Consensus 818 S~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~-~~~d~~f~~~~l~-~~~~~~~ 895 (1281)
|+||+|+|.++++ +||||+|||||++++. .++|++|+.+.+. ..+++++
T Consensus 724 SlGNvIDP~evI~-----------------------------kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~ 774 (1205)
T PTZ00427 724 RLKNYPDPLYILD-----------------------------KYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFIL 774 (1205)
T ss_pred CCCCCCCHHHHHH-----------------------------hcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHH
Confidence 9999999999999 9999999999998865 4799999999885 4778999
Q ss_pred HHHHHHHHHHHhhcCCCC--------CC---CCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhH
Q psy17125 896 KIRSSLRYLLGVLHNHSE--------ST---GSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAF 964 (1281)
Q Consensus 896 kl~n~~r~~~~~l~~~~~--------~~---~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~ 964 (1281)
++||.++|+.+++.++.. .. ......+|+||+++++++++.++++|++|+|++|++.+++|+ .++|+|
T Consensus 775 klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi-~~lsnw 853 (1205)
T PTZ00427 775 PFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFI-ENLTNW 853 (1205)
T ss_pred HHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHhccH
Confidence 999999999886653321 10 123467899999999999999999999999999999999999 569999
Q ss_pred HHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCC---------------------CC
Q psy17125 965 YFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQG---------------------TF 1023 (1281)
Q Consensus 965 Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~---------------------~~ 1023 (1281)
|++.+|++++.+.. ..++.+++.+|+++++.+++||||||||+||++|++|+.... ..
T Consensus 854 YIe~~K~rl~~~~~-~~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1205)
T PTZ00427 854 YIRLNRDRMRGSLG-EENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRRVKSTNEHNENNETGNTKEGDLNRGVI 932 (1205)
T ss_pred HHHHcchhhccCCC-cHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhhccccccccccccccccccccccccCC
Confidence 99999999987532 234567889999999999999999999999999999964200 01
Q ss_pred cccccccccccccc
Q psy17125 1024 SSFCHFKVYLQYSG 1037 (1281)
Q Consensus 1024 ~s~~~~~~~p~~~~ 1037 (1281)
..++|...||.+++
T Consensus 933 ~~Svh~~~~P~~~~ 946 (1205)
T PTZ00427 933 HKSVHFIMLPQVDE 946 (1205)
T ss_pred CCeeEeeCCCCCcc
Confidence 23688899998764
No 9
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.7e-135 Score=1317.59 Aligned_cols=709 Identities=29% Similarity=0.554 Sum_probs=613.6
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhccc-------CCCHHH
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDK-------LLSPLD 88 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~-------~~~~~e 88 (1281)
+++++|+|++|||||||.|||||++|++++|+++||+||+||+|++++||||||+|||.++++++|. .++.++
T Consensus 38 ~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~ 117 (975)
T PRK06039 38 EGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEK 117 (975)
T ss_pred CCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999987551 357889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcccccccccc
Q psy17125 89 IRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESEL 168 (1281)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev 168 (1281)
++++|++|+.++++.|++++++||+++||+| +|.|+||.|+++++|+|.+|+++||||++.++|+|||.|+|+|||+||
T Consensus 118 f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~-~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev 196 (975)
T PRK06039 118 FNEKCRESVLRYTDEWEEYTERLGRWVDFDN-PYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEV 196 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceeecCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHH
Confidence 9999999999999999999999999999995 999999999999999999999999999999999999999999999999
Q ss_pred c--cCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhh
Q psy17125 169 E--YKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLK 246 (1281)
Q Consensus 169 ~--~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~ 246 (1281)
+ |++ +.++++||+|++.+ ..+.+++||||||||||||+||+|||+.+|++++.+++.||+++++++.+.
T Consensus 197 ~~~y~~-~~~~~~~v~f~l~~--------~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~ 267 (975)
T PRK06039 197 AQGYKD-VKDPSVYVKFKLKG--------EENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVL 267 (975)
T ss_pred hhcccc-cCCceEEEEEEecC--------CCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHh
Confidence 8 887 88999999999853 134699999999999999999999999999999988899999998775321
Q ss_pred hhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCC
Q psy17125 247 WTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQG 326 (1281)
Q Consensus 247 ~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g 326 (1281)
. .+++
T Consensus 268 ~---~~~~------------------------------------------------------------------------ 272 (975)
T PRK06039 268 K---EDYE------------------------------------------------------------------------ 272 (975)
T ss_pred h---cccE------------------------------------------------------------------------
Confidence 1 1122
Q ss_pred CcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccc
Q psy17125 327 KYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNIL 406 (1281)
Q Consensus 327 ~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~i 406 (1281)
T Consensus 273 -------------------------------------------------------------------------------- 272 (975)
T PRK06039 273 -------------------------------------------------------------------------------- 272 (975)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceec
Q psy17125 407 GRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVAS 486 (1281)
Q Consensus 407 g~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~ 486 (1281)
T Consensus 273 -------------------------------------------------------------------------------- 272 (975)
T PRK06039 273 -------------------------------------------------------------------------------- 272 (975)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCc---cCcceeeeeCCccccCCCCceEecCCCCChh
Q psy17125 487 VKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINK---EQRDLKLLPAGFVSSSKGTGLVHCAPAHGQD 563 (1281)
Q Consensus 487 ~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~---~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~ 563 (1281)
++++++|++|+|++|.||+.. .+..+||++++||++++|||+||+|||||++
T Consensus 273 -------------------------~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~ 327 (975)
T PRK06039 273 -------------------------VVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGED 327 (975)
T ss_pred -------------------------EEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChH
Confidence 234456777777777777752 1123999999999999999999999999999
Q ss_pred HHHHHHHcCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCCceEEccccc
Q psy17125 564 DFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKPVILKASQQ 641 (1281)
Q Consensus 564 Dy~~~~~~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~v~~~~~~q 641 (1281)
||+++++||||++++||++|+|++.+| .|.|+.++ +|++.|++.|++ .+++.+.+.|++|+|||||+||++++++|
T Consensus 328 D~~~~~~~~l~~~~~id~~G~~~~~~~-~~~G~~v~-eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~q 405 (975)
T PRK06039 328 DFEVGKKYGLPVVCPVDDDGRFTEEVP-DYAGKFVK-DADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATES 405 (975)
T ss_pred HHHHHHHcCCCccceeCCCceEcCCCc-cccCCCHH-HhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCe
Confidence 999999999999999999999998775 69999997 799999999998 46778899999999999999999999999
Q ss_pred cccChhhHHHHHHHhhhcccccchhHHH-HHHHHHHcCCCcccccccCCCccceeEecC--CeEEechhhHHHHHhhhhh
Q psy17125 642 WFIDTERIKPEALACLEEVNFVPESAKK-TLRDQIAQRPYWCISRQRVWGVPIPVFYDG--DTIIVNEANIKHFCTLIDE 718 (1281)
Q Consensus 642 Wf~~~~~~~~~~~e~~~~~~~~P~~~r~-~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~--~~i~v~~~~~~~i~~~~~~ 718 (1281)
||++++++++++++++++++|+|+..++ ++.+||++++||||||||+||+|||+|+|+ +.+.+ ...+.++...
T Consensus 406 WFi~~~~~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v-~~~~~el~~~--- 481 (975)
T PRK06039 406 WFIRVTKIKDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRIDV-IGSIEELEEL--- 481 (975)
T ss_pred eeEecHHHHHHHHHhhCCeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecCCCeEEE-eccHHHHHHH---
Confidence 9999999999999999999999999999 999999999999999999999999999983 33333 3344444322
Q ss_pred cCCCCccCcCccccccc-------cc-cccccccccccccccccCCcchhhhcc-----------CCCccceeeccceee
Q psy17125 719 HGPDFWWSLSVEQLLNT-------SD-VNSNVTKSNDILDIWFDSGISWSHVLK-----------DKPAHVYMEGMDQIN 779 (1281)
Q Consensus 719 ~g~d~~~~~~~~~l~~~-------~~-~~~~~~~~~dvlD~WFdS~l~w~~~l~-----------~~p~dl~~~G~Dii~ 779 (1281)
.|.+ ..+.+++++ .+ ++..+.|++||||+||||+++|+..++ -||+|++++|+||++
T Consensus 482 ~g~~----~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r 557 (975)
T PRK06039 482 FGED----VEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTR 557 (975)
T ss_pred hCCC----cchhhhcccccccccccCCCCcceEeccccccceeecCCccHHHhCCcccChhhhhccCCceEEEechhhHh
Confidence 2221 011111111 11 255688999999999999986554432 189999999999999
Q ss_pred ehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCC
Q psy17125 780 GWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLP 859 (1281)
Q Consensus 780 ~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~ 859 (1281)
|||.++++.++++.+..||+++++||+|++.+|+|||||+||+|+|.++++
T Consensus 558 ~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~----------------------------- 608 (975)
T PRK06039 558 GWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFD----------------------------- 608 (975)
T ss_pred hHHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHhcCCCCCccccCcch-hccchHHHHHHHHHHHHHHH--hhcCCCCCC----CCcCcHHHHHHHHHHHH
Q psy17125 860 AYGVDVLRWWVAAHASKDPTVPIGKNI-LNSSQDDVQKIRSSLRYLLG--VLHNHSEST----GSISRYVDVYMLKRLCE 932 (1281)
Q Consensus 860 ~yGaDalR~~l~~~~~~~~d~~f~~~~-l~~~~~~~~kl~n~~r~~~~--~l~~~~~~~----~~~~~~~d~~il~~l~~ 932 (1281)
+||+|++||||+++++.++|++|+.+. +..++++++++||+++|+.. ++.++.... .......|+|+++++++
T Consensus 609 ~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~ 688 (975)
T PRK06039 609 KYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNS 688 (975)
T ss_pred HhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHH
Confidence 999999999999999889999999999 67778899999999999763 333332110 12356789999999999
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHH
Q psy17125 933 FQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEV 1012 (1281)
Q Consensus 933 ~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel 1012 (1281)
+++.+.++|++|+|++|++.+++|+ +++|++|++..|++++.... +.++.+++.+++.+++.+++||+|||||+||++
T Consensus 689 li~~v~~a~e~y~~~~A~~~l~~f~-~~lsn~Yi~~~k~r~w~~~~-~~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei 766 (975)
T PRK06039 689 LVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSRRRFWKEED-DPDKLAAYATLYTVLETLSRLAAPFTPFIAEEI 766 (975)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH-HHHHHHHHHHhhhhhccCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999999999 99999999999998876533 344667888999999999999999999999999
Q ss_pred HhhCCCCCCCCcccccccccccccc
Q psy17125 1013 YSHLPSRQGTFSSFCHFKVYLQYSG 1037 (1281)
Q Consensus 1013 ~~~L~~~~~~~~s~~~~~~~p~~~~ 1037 (1281)
|+.|+... ...+++.+.||.+++
T Consensus 767 ~~~L~~~~--~~~sv~~~~~P~~~~ 789 (975)
T PRK06039 767 YQNLTRED--APESVHLADWPEVDE 789 (975)
T ss_pred HHhccccC--CCCeeEecCCCCCcc
Confidence 99997521 124677888998764
No 10
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=2.1e-133 Score=1297.04 Aligned_cols=735 Identities=36% Similarity=0.654 Sum_probs=631.0
Q ss_pred HHHHHHHHcCCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhccc----
Q psy17125 7 LYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDK---- 82 (1281)
Q Consensus 7 ~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~---- 82 (1281)
+|++..+..+++++|+|++|||||||.|||||++|++++|+++||+||+||+|++++||||||+|||.+|+++.|.
T Consensus 24 ~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~ 103 (861)
T TIGR00392 24 IFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKK 103 (861)
T ss_pred chhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCccccc
Confidence 3444333234678899999999999999999999999999999999999999999999999999999999988641
Q ss_pred CC---CHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCc
Q psy17125 83 LL---SPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSS 159 (1281)
Q Consensus 83 ~~---~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~ 159 (1281)
.+ ..++++++|++|+.++++.|+++|++||+++||+| +|.|+||.|+++++|+|.+|+++|+||++.++|+|||.|
T Consensus 104 ~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~-~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~ 182 (861)
T TIGR00392 104 EISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWEN-PYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRC 182 (861)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCC-CcCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCc
Confidence 22 23668999999999999999999999999999996 999999999999999999999999999999999999999
Q ss_pred cccccccccccCCC---CcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEec--Cce
Q psy17125 160 RTALAESELEYKPD---HVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVK--GAN 234 (1281)
Q Consensus 160 ~t~lad~ev~~~~~---~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~--~~~ 234 (1281)
+|+|||+||++++. +.++++||+|++.+.... ....+..+++||||||||||||+||+|||+.+|++++.+ ++.
T Consensus 183 ~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~-~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~ 261 (861)
T TIGR00392 183 RTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKT-YLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEY 261 (861)
T ss_pred CCcccHHHHhcccccccccCceEEEEEEecCCccc-ccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcE
Confidence 99999999998653 689999999998642110 000011289999999999999999999999999998765 367
Q ss_pred EEeehhhHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHc
Q psy17125 235 VIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAE 314 (1281)
Q Consensus 235 ~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~ 314 (1281)
||+++++++.+
T Consensus 262 ~i~~~~~~~~~--------------------------------------------------------------------- 272 (861)
T TIGR00392 262 FILAKKLVEKL--------------------------------------------------------------------- 272 (861)
T ss_pred EEEeHHHHHHH---------------------------------------------------------------------
Confidence 77777665421
Q ss_pred CCCcceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchh
Q psy17125 315 KIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKP 394 (1281)
Q Consensus 315 ~l~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~ 394 (1281)
T Consensus 273 -------------------------------------------------------------------------------- 272 (861)
T TIGR00392 273 -------------------------------------------------------------------------------- 272 (861)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCccccc
Q psy17125 395 EALVCKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFI 474 (1281)
Q Consensus 395 e~~~~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i 474 (1281)
T Consensus 273 -------------------------------------------------------------------------------- 272 (861)
T TIGR00392 273 -------------------------------------------------------------------------------- 272 (861)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccccceecccCceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcce------ee-eeCCcccc
Q psy17125 475 AFNPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDL------KL-LPAGFVSS 547 (1281)
Q Consensus 475 ~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~i------pI-i~~~~V~~ 547 (1281)
..+.+.+.+++++++|.+|+|++|.||+++.. + |+ ++++||++
T Consensus 273 ----------------------------~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~--~~~~~~~p~v~~~~~V~~ 322 (861)
T TIGR00392 273 ----------------------------YNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFV--SQLKEGAPVVIGGDHVTT 322 (861)
T ss_pred ----------------------------HHhcCCceEEEeeecchhhCCCEEECCCCccc--cccccCCcEEeCCCCCCC
Confidence 11111123455677899999999999998765 6 86 55599999
Q ss_pred CCCCceEecCCCCChhHHHHHHHcCCCeecccCCCCccCCCCCC------CCCCceeccccchhHHhhhcc--ccccccc
Q psy17125 548 SKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGP------GLEGLNILGDGKDQVLHLVEP--DVLWTEN 619 (1281)
Q Consensus 548 ~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid~~G~~~~~~~~------~~~G~~v~~~~~~~v~~~L~~--~~~~~~~ 619 (1281)
++|||+||+|||||++||+++++||||++++||++|+|+.+++. .|.|++++ +|++.|++.|++ .+++.+.
T Consensus 323 ~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~-~a~~~ii~~L~~~g~l~~~~~ 401 (861)
T TIGR00392 323 EDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDII-KANKIIIEQLKDKGLLLKAEK 401 (861)
T ss_pred CCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHH-HhHHHHHHHHHhCCCeeeeee
Confidence 99999999999999999999999999999999999999876543 48899887 789999999998 4778899
Q ss_pred cccccCcccCCCCceEEccccccccChhhHHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec-
Q psy17125 620 YQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD- 698 (1281)
Q Consensus 620 ~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~- 698 (1281)
+.|++|+|||||+||++++++|||++++.+++++++++++++++|+..++++.+||++++||||||||+||+|||+|+|
T Consensus 402 ~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~ 481 (861)
T TIGR00392 402 ITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWYCE 481 (861)
T ss_pred EecCCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhCCcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CCeEEechhhHHHHHhhhhhcCCCCccCcCcccccccc---c-cccccccccccccccccCCcchhhhcc---------
Q psy17125 699 -GDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTS---D-VNSNVTKSNDILDIWFDSGISWSHVLK--------- 764 (1281)
Q Consensus 699 -~~~i~v~~~~~~~i~~~~~~~g~d~~~~~~~~~l~~~~---~-~~~~~~~~~dvlD~WFdS~l~w~~~l~--------- 764 (1281)
++.+ ++.++++++.+.++..|.+.||....+++.+.. + ++..+.+++|||||||||+++|+..++
T Consensus 482 ~~~~~-~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~~~~~~f~ 560 (861)
T TIGR00392 482 DTGEP-IVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYPFENEKFK 560 (861)
T ss_pred CCCCC-cCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCCCCcchhh
Confidence 4555 677778888777767788888865544444322 1 125788999999999999998876553
Q ss_pred C-CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccC
Q psy17125 765 D-KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVG 843 (1281)
Q Consensus 765 ~-~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~g 843 (1281)
. ||+|+|++|+||++|||+++++.++++.+..||+++++||||++.+|+|||||+||+|+|.++++
T Consensus 561 ~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~------------- 627 (861)
T TIGR00392 561 EVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVIN------------- 627 (861)
T ss_pred ccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHH-------------
Confidence 1 79999999999999999999999999989999999999999998899999999999999999999
Q ss_pred cccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchH-HHHHHHHHHHHHH--HhhcCCCCCC----C
Q psy17125 844 NVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQD-DVQKIRSSLRYLL--GVLHNHSEST----G 916 (1281)
Q Consensus 844 n~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~-~~~kl~n~~r~~~--~~l~~~~~~~----~ 916 (1281)
+||+|++|||++++ +..+|++|+.+.+....+ +.+++||+++++. +++.++.+.. .
T Consensus 628 ----------------~yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~ 690 (861)
T TIGR00392 628 ----------------KYGADILRLYVASS-DPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAV 690 (861)
T ss_pred ----------------HcCHHHHHHHHHhC-CCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 99999999999999 789999999999988665 8999999999998 6666554211 1
Q ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHH
Q psy17125 917 SISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHV 996 (1281)
Q Consensus 917 ~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~ 996 (1281)
......|+|++++++.+++++.++|++|+|++|++.+++|+.++++|+|++..|+++|....++..+ +++.+++.+++.
T Consensus 691 ~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~-~~~~~l~~~l~~ 769 (861)
T TIGR00392 691 EKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKR-AAQTTLYYALLT 769 (861)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCHHHH-HHHHHHHHHHHH
Confidence 2346789999999999999999999999999999999999977799999999999888765444444 677889999999
Q ss_pred HHHHhccccCccHHHHHhhCCCCCCCCcccccccccccccc
Q psy17125 997 LLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYLQYSG 1037 (1281)
Q Consensus 997 l~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~p~~~~ 1037 (1281)
+++||+|||||+||++|+.|+.... ..+++.+.||.+++
T Consensus 770 l~~lL~P~~P~~aeeiw~~L~~~~~--~~si~~~~wP~~~~ 808 (861)
T TIGR00392 770 LVRLLAPFLPHTAEEIYQNLPGGEE--EESVHLNLWPEVDE 808 (861)
T ss_pred HHHHHHHhhhhhHHHHHHhccccCC--CCceeccCCCCCch
Confidence 9999999999999999999975411 23566788887653
No 11
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=3.6e-132 Score=1284.01 Aligned_cols=720 Identities=23% Similarity=0.371 Sum_probs=600.7
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhc----c---cCCCHHHH
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK----D---KLLSPLDI 89 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~----~---~~~~~~e~ 89 (1281)
++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|++||||||+|++.++++++ | .+++++++
T Consensus 126 ~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f 205 (1066)
T PLN02381 126 SKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEF 205 (1066)
T ss_pred CCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHH
Confidence 5688999999999999999999999999999999999999999999999999999999988765 2 24578899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccc
Q psy17125 90 RKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELE 169 (1281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~ 169 (1281)
.+.|++|++++++.|+++|++||+++||+| .|+|+|+.|.++|+|+|.+|+++||||++.++|+|||.|+|+|||+||+
T Consensus 206 ~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~-~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVe 284 (1066)
T PLN02381 206 VSEVWKWKDEYGGTILNQLRRLGASLDWSR-ECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVD 284 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhccCC-ccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhh
Confidence 999999999999999999999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhc
Q psy17125 170 YKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTF 249 (1281)
Q Consensus 170 ~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~ 249 (1281)
|++ ..++++| +|+... ..+++.+||.
T Consensus 285 y~d-~~~~s~~-~~~~~~---------~~~~~g~~~~------------------------------------------- 310 (1066)
T PLN02381 285 YID-IKERTLL-KVPGYD---------KPVEFGVLTS------------------------------------------- 310 (1066)
T ss_pred hhc-cccchhh-cccCCC---------cceeeEEEEE-------------------------------------------
Confidence 886 5555554 444210 0111111100
Q ss_pred cCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcC
Q psy17125 250 QTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYS 329 (1281)
Q Consensus 250 ~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~ 329 (1281)
T Consensus 311 -------------------------------------------------------------------------------- 310 (1066)
T PLN02381 311 -------------------------------------------------------------------------------- 310 (1066)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhccccccc
Q psy17125 330 PDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRV 409 (1281)
Q Consensus 330 ~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~ 409 (1281)
T Consensus 311 -------------------------------------------------------------------------------- 310 (1066)
T PLN02381 311 -------------------------------------------------------------------------------- 310 (1066)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccC
Q psy17125 410 GITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG 489 (1281)
Q Consensus 410 ~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~ 489 (1281)
+.| ++. ..+..++|+|||||||+|++|++|||+++.
T Consensus 311 ---------------~~Y-------------~l~---------~~~~~i~vATtRpEti~g~~avaV~P~d~r------- 346 (1066)
T PLN02381 311 ---------------FAY-------------PLE---------GGLGEIVVATTRIETMLGDTAIAIHPDDER------- 346 (1066)
T ss_pred ---------------EEE-------------Eec---------CCCCEEEEecCCHHHHhcccceeeCCCCcc-------
Confidence 001 000 011358899999999999999999998651
Q ss_pred ceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeC-CccccCCCCceEecCCCCChhHHHHH
Q psy17125 490 ANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPA-GFVSSSKGTGLVHCAPAHGQDDFLLA 568 (1281)
Q Consensus 490 ~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~-~~V~~~~GTG~V~~~PaH~~~Dy~~~ 568 (1281)
+++|+|+++.||+++.. +|||.+ +||++++|||+||++||||++||+++
T Consensus 347 ----------------------------y~~L~G~~~~~Pl~~~~--ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~ 396 (1066)
T PLN02381 347 ----------------------------YKHLHGKFAVHPFNGRK--LPIICDAILVDPNFGTGAVKITPAHDPNDFEVG 396 (1066)
T ss_pred ----------------------------hhhhCCCEEECCCCCCE--EEEEECCccccccCCCCcEEecCCCChHHHHHH
Confidence 45689999999998865 999986 59999999999999999999999999
Q ss_pred HHcCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCCceEEccccccccCh
Q psy17125 569 LAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKPVILKASQQWFIDT 646 (1281)
Q Consensus 569 ~~~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~ 646 (1281)
++|+||++++||++|+|++.+++.|.|+.++ +|++.|++.|++ .+++.+.+.|++|+||||++||++++++|||+++
T Consensus 397 ~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~-eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~ 475 (1066)
T PLN02381 397 KRHNLEFINIFTDDGKINSNGGSEFAGMPRF-AAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNC 475 (1066)
T ss_pred HHcCCCeeeeeCCCceeCCCCccccCCCCHH-HHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEc
Confidence 9999999999999999998876679999997 799999999998 4566788999999999999999999999999999
Q ss_pred hhHHHHHHHhh-----hcccccchhHHHHHHHHHHcCCCcccccccCCCccceeEecCCeEEechhhHHHHHhhhhhcCC
Q psy17125 647 ERIKPEALACL-----EEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGP 721 (1281)
Q Consensus 647 ~~~~~~~~e~~-----~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~i~v~~~~~~~i~~~~~~~g~ 721 (1281)
+.+++++++++ ++++|+|+..++++.+||++++||||||||+||+|||+|+|. ++... +...|.
T Consensus 476 ~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~----~~~~~-------~~~~g~ 544 (1066)
T PLN02381 476 SSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVT----LEDDQ-------LKELGS 544 (1066)
T ss_pred hHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEec----cChhh-------cccCCc
Confidence 99999999998 678999999999999999999999999999999999999973 00000 011222
Q ss_pred --CCcc-CcCccccccc---ccccc--ccccccccccccccCCcchhhhcc----------CCCccceeeccceeeehhh
Q psy17125 722 --DFWW-SLSVEQLLNT---SDVNS--NVTKSNDILDIWFDSGISWSHVLK----------DKPAHVYMEGMDQINGWFM 783 (1281)
Q Consensus 722 --d~~~-~~~~~~l~~~---~~~~~--~~~~~~dvlD~WFdS~l~w~~~l~----------~~p~dl~~~G~Dii~~wf~ 783 (1281)
+.|+ ..+.++..+. .+++. .+.+++||||||||||++|...++ -||+|++++|.||++|||.
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~P~d~~~~G~Dii~~W~~ 624 (1066)
T PLN02381 545 YNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVA 624 (1066)
T ss_pred ccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccCCCeeeeecchhhhhHHH
Confidence 2343 2222222222 22232 378999999999999997766553 1899999999999999999
Q ss_pred HHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCccccc-ccCccccc-------ccccccc
Q psy17125 784 SSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEK-SVGNVISA-------HDITQGA 855 (1281)
Q Consensus 784 ~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msk-s~gn~~~~-------~~~~~~~ 855 (1281)
+|+++++.+.+..||++|++||+|+|.+|+|||||+||||+|.++|+|+......++ ..||+-+. ....+-+
T Consensus 625 rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p 704 (1066)
T PLN02381 625 RMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFP 704 (1066)
T ss_pred HHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCC
Confidence 999999999999999999999999999999999999999999999998754333333 34444321 1112335
Q ss_pred cCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcC-CCCCC---CCcCcHHHHHHHHHHH
Q psy17125 856 KKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHN-HSEST---GSISRYVDVYMLKRLC 931 (1281)
Q Consensus 856 ~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~-~~~~~---~~~~~~~d~~il~~l~ 931 (1281)
.|||+||||+|||||++.++.++|++|+...+.++++|++||||++||+++++.+ +.+.. ......+|+|++++|+
T Consensus 705 ~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~~~~~~~~~~DrWILskL~ 784 (1066)
T PLN02381 705 NGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPATLSVETMPFSCKWILSVLN 784 (1066)
T ss_pred CCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccCccccCHHHHHHHHHHH
Confidence 7999999999999999999889999999999999999999999999999877643 32211 1234578999999999
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCC-ChHHHHHHHHHHHHHHHHHHHHhccccCccHH
Q psy17125 932 EFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSI-NGEARLSGLHTLHNIFHVLLRTVAPIMPHLAE 1010 (1281)
Q Consensus 932 ~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~-~~~~r~~~~~~l~~~l~~l~~lLaP~~P~lae 1010 (1281)
.++++++++|++|+|+.|++.+++|+++++||+|++..|+|++.+.. ++.++.+++.+|..++..+++||||||||+||
T Consensus 785 ~~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitE 864 (1066)
T PLN02381 785 KAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTE 864 (1066)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 99999999999999999999999999999999999999999886532 23445667889999999999999999999999
Q ss_pred HHHhhCCCCCC-CCcccccccccccccc
Q psy17125 1011 EVYSHLPSRQG-TFSSFCHFKVYLQYSG 1037 (1281)
Q Consensus 1011 el~~~L~~~~~-~~~s~~~~~~~p~~~~ 1037 (1281)
|+|+.|+...+ .-..+++.+.||.+++
T Consensus 865 ELw~~L~~~~~~~~~~SI~~~~~P~~~~ 892 (1066)
T PLN02381 865 ELWQRLPQPKDHTRKDSIMISEYPSAVE 892 (1066)
T ss_pred HHHHHhhhhccCCCCCeeEeCCCCCCCc
Confidence 99999964211 0123566788887653
No 12
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=7.2e-130 Score=1273.29 Aligned_cols=715 Identities=24% Similarity=0.377 Sum_probs=591.1
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhc----c---cCCCHHHH
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK----D---KLLSPLDI 89 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~----~---~~~~~~e~ 89 (1281)
++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++||||||+|++.++++.. | .+++++++
T Consensus 58 ~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f 137 (995)
T PTZ00419 58 SGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEF 137 (995)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHH
Confidence 5688999999999999999999999999999999999999999999999999999977665543 2 24678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccc
Q psy17125 90 RKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELE 169 (1281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~ 169 (1281)
++.|++|++++++.|+++|++||+++||+| +|+|+|+.|.+.++++|.+|+++|+||++.++|+|||.|+|+|||+||+
T Consensus 138 ~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~-~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe 216 (995)
T PTZ00419 138 LKKVWEWKDKHGNNICNQLRRLGSSLDWSR-EVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVE 216 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCceeeCCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcc
Confidence 999999999999999999999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhc
Q psy17125 170 YKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTF 249 (1281)
Q Consensus 170 ~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~ 249 (1281)
|++ ..++++ ++|+....+ + + +| ..-|..+.
T Consensus 217 ~~~-~~~~~~-~~~~~~~~~---------~---------~--~g--------~l~~i~f~-------------------- 246 (995)
T PTZ00419 217 FEE-IEKPTK-ITIPGYDKK---------V---------E--VG--------VLWHFAYP-------------------- 246 (995)
T ss_pred ccc-ccccce-eeccccccc---------c---------c--cc--------eeEEEEEe--------------------
Confidence 986 666665 666542100 0 0 00 00111100
Q ss_pred cCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcC
Q psy17125 250 QTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYS 329 (1281)
Q Consensus 250 ~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~ 329 (1281)
+
T Consensus 247 -----------------------l-------------------------------------------------------- 247 (995)
T PTZ00419 247 -----------------------L-------------------------------------------------------- 247 (995)
T ss_pred -----------------------e--------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhccccccc
Q psy17125 330 PDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRV 409 (1281)
Q Consensus 330 ~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~ 409 (1281)
T Consensus 248 -------------------------------------------------------------------------------- 247 (995)
T PTZ00419 248 -------------------------------------------------------------------------------- 247 (995)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccC
Q psy17125 410 GITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG 489 (1281)
Q Consensus 410 ~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~ 489 (1281)
. +.++.+++|||||||||+|++||||||++++
T Consensus 248 ---------------------------------~--------~~~~~~l~vaTTrPeTl~g~~avav~P~d~~------- 279 (995)
T PTZ00419 248 ---------------------------------E--------DSGQEEIVVATTRIETMLGDVAVAVHPKDER------- 279 (995)
T ss_pred ---------------------------------c--------CCCCcEEEEEeCCcchhhhCeEEEECCCCcH-------
Confidence 0 0001257899999999999999999998752
Q ss_pred ceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCC-CccCcceeeeeCC-ccccCCCCceEecCCCCChhHHHH
Q psy17125 490 ANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPI-NKEQRDLKLLPAG-FVSSSKGTGLVHCAPAHGQDDFLL 567 (1281)
Q Consensus 490 ~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl-~~~~~~ipIi~~~-~V~~~~GTG~V~~~PaH~~~Dy~~ 567 (1281)
.++|+|+++.||+ .+.. +|||+++ ||++++|||+||++||||++||++
T Consensus 280 ----------------------------y~~l~G~~~~~Pl~~~~~--ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~ 329 (995)
T PTZ00419 280 ----------------------------YKKLHGKELIHPFIPDRK--IPIIADDELVDMEFGTGAVKITPAHDPNDYEI 329 (995)
T ss_pred ----------------------------HHHhcCCEEECCccCCCE--EEEEeCCcccCCCcCCCCeEeCCCCChHHHHH
Confidence 1347899999999 6654 9999999 999999999999999999999999
Q ss_pred HHHcCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCCceEEccccccccC
Q psy17125 568 ALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKPVILKASQQWFID 645 (1281)
Q Consensus 568 ~~~~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~ 645 (1281)
+++|+||++++||++|+|++++| .|.|+.++ +|++.|++.|++ .+++.+.+.|++|+|||||+||++++++|||++
T Consensus 330 ~~~~~L~~~~~i~~~G~~~~~~~-~~~Gl~~~-~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~ 407 (995)
T PTZ00419 330 AKRHNLPFINIFTLDGKINENGG-EFAGMHRF-DCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVN 407 (995)
T ss_pred HHHcCCCeeeeeCCCceEcCCCc-ccCCCCHH-HHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEe
Confidence 99999999999999999987764 69999997 799999999998 466778899999999999999999999999999
Q ss_pred hhhHHHHHHHhhh--cccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec--CCeEEechhhHHHHHhhhhhcCC
Q psy17125 646 TERIKPEALACLE--EVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD--GDTIIVNEANIKHFCTLIDEHGP 721 (1281)
Q Consensus 646 ~~~~~~~~~e~~~--~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~--~~~i~v~~~~~~~i~~~~~~~g~ 721 (1281)
++.++++++++++ +++|+|+..++++.+||++++||||||||+||+|||+|+| ++....+ .+.
T Consensus 408 ~~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~-------------~~~ 474 (995)
T PTZ00419 408 CKDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDP-------------SDE 474 (995)
T ss_pred cHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCccccC-------------CCC
Confidence 9999999999997 6899999999999999999999999999999999999998 3311000 001
Q ss_pred CCcc-CcCcccccc-------ccccccccccccccccccccCCcchhhhcc----------CCCccceeeccceeeehhh
Q psy17125 722 DFWW-SLSVEQLLN-------TSDVNSNVTKSNDILDIWFDSGISWSHVLK----------DKPAHVYMEGMDQINGWFM 783 (1281)
Q Consensus 722 d~~~-~~~~~~l~~-------~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~----------~~p~dl~~~G~Dii~~wf~ 783 (1281)
+.|+ ..+.++..+ ...++..+.|++|||||||||+++|...++ -||+|++++|+||+++||.
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a 554 (995)
T PTZ00419 475 EPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVA 554 (995)
T ss_pred ceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCCCcEEEechhHHhHHHH
Confidence 1111 001111100 001234678999999999999987655543 1899999999999999999
Q ss_pred HHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCccccc-ccCcccccc-------cccccc
Q psy17125 784 SSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEK-SVGNVISAH-------DITQGA 855 (1281)
Q Consensus 784 ~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msk-s~gn~~~~~-------~~~~~~ 855 (1281)
+|+++++.+.+++||++|++||+|+|.+|+|||||+||||+|.++++|++.....++ ..||+-+.. ...+-+
T Consensus 555 rm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~ 634 (995)
T PTZ00419 555 RMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFP 634 (995)
T ss_pred HHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCC
Confidence 999999999999999999999999999999999999999999999998653322222 233332211 111235
Q ss_pred cCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCC---------CCcCcHHHHHH
Q psy17125 856 KKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSEST---------GSISRYVDVYM 926 (1281)
Q Consensus 856 ~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~---------~~~~~~~d~~i 926 (1281)
+|||+||||++||||++.+..++|++|+.+.+...++|++|+||++||+++++.++.... .......|+|+
T Consensus 635 ~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wI 714 (995)
T PTZ00419 635 NGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWI 714 (995)
T ss_pred CCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHH
Confidence 799999999999999999998999999999999999999999999999998776543211 12345689999
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccC
Q psy17125 927 LKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMP 1006 (1281)
Q Consensus 927 l~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P 1006 (1281)
+++++.+++.++++|++|+|+.|++.+++|+++++||+|++.+|+|++. ..++..+.+++.++.++++.+++||+||||
T Consensus 715 ls~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~-~~~~~~~~~~~~~L~~vL~~~l~LL~PfmP 793 (995)
T PTZ00419 715 LHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDVYLELIKPRLSK-QSDGERKQHAQDVLHTVLDIGLRLLHPMMP 793 (995)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhc-CCCcHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999832 223445667888999999999999999999
Q ss_pred ccHHHHHhhCCCCCCCCccccccccccccc
Q psy17125 1007 HLAEEVYSHLPSRQGTFSSFCHFKVYLQYS 1036 (1281)
Q Consensus 1007 ~laeel~~~L~~~~~~~~s~~~~~~~p~~~ 1036 (1281)
|+|||+|++|+.... -..+++.+.||.++
T Consensus 794 fitEElw~~L~~~~~-~~~si~~~~~P~~~ 822 (995)
T PTZ00419 794 FITEELYQRLPNYLR-KSESISIAKYPQPN 822 (995)
T ss_pred hhHHHHHHhhhccCC-CCCeeeccCCCCCC
Confidence 999999999974211 12346677888765
No 13
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.2e-128 Score=1245.21 Aligned_cols=651 Identities=27% Similarity=0.450 Sum_probs=580.4
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhc---c---cCCCHHHHHH
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK---D---KLLSPLDIRK 91 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~---~---~~~~~~e~~~ 91 (1281)
+++|+|++||||+||.||||||+|++++|+++||+||+||+|+|++||||||+|+|.+++++. | .+++++++++
T Consensus 35 ~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~ 114 (874)
T PRK05729 35 KKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLE 114 (874)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHH
Confidence 556999999999999999999999999999999999999999999999999999988776654 2 2457788999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccC
Q psy17125 92 KAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYK 171 (1281)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~ 171 (1281)
.|++|+++++..++++|++||+++||+| .|+|+|+.|.++|+++|.+|+++|+||++.++|+|||.|+|+|||+||+|+
T Consensus 115 ~~~~w~~~~~~~~~~~~~~lG~s~Dw~r-~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~ 193 (874)
T PRK05729 115 KVWEWKEESGGTITNQLRRLGASCDWSR-ERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYK 193 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcceecCC-CcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhcccc
Confidence 9999999999999999999999999996 999999999999999999999999999999999999999999999999998
Q ss_pred CCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccC
Q psy17125 172 PDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQT 251 (1281)
Q Consensus 172 ~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~ 251 (1281)
+ ..+.++||+|++.+ .+.+++|||||||||+|++||+|||+.+.
T Consensus 194 ~-~~~~~~~i~f~~~~---------~~~~l~vaTtrPeTl~~~~avaV~P~d~r-------------------------- 237 (874)
T PRK05729 194 E-VKGKLWHIRYPLAD---------GSDYLVVATTRPETMLGDTAVAVNPEDER-------------------------- 237 (874)
T ss_pred c-ccceEEEEEEEecC---------CCcEEEEEeCCcchhhcCeeEeECCCccH--------------------------
Confidence 7 88999999999864 24588888888888888888888885320
Q ss_pred CceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCC
Q psy17125 252 DIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPD 331 (1281)
Q Consensus 252 ~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~ 331 (1281)
T Consensus 238 -------------------------------------------------------------------------------- 237 (874)
T PRK05729 238 -------------------------------------------------------------------------------- 237 (874)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhccccccccc
Q psy17125 332 AGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGI 411 (1281)
Q Consensus 332 ~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~ 411 (1281)
T Consensus 238 -------------------------------------------------------------------------------- 237 (874)
T PRK05729 238 -------------------------------------------------------------------------------- 237 (874)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCce
Q psy17125 412 THDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGAN 491 (1281)
Q Consensus 412 ~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~ 491 (1281)
T Consensus 238 -------------------------------------------------------------------------------- 237 (874)
T PRK05729 238 -------------------------------------------------------------------------------- 237 (874)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHc
Q psy17125 492 VIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAE 571 (1281)
Q Consensus 492 ~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~ 571 (1281)
..+|+|+++.||+.+.. +|||+++||++++|||+||++||||++||+++++|
T Consensus 238 --------------------------y~~l~g~~~~~P~~~~~--ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~ 289 (874)
T PRK05729 238 --------------------------YKHLIGKTVILPLVGRE--IPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRH 289 (874)
T ss_pred --------------------------HHHhcCCEEECCCCCCe--eeEecCccCCCCCCCcceEecCCCCHHHHHHHHHc
Confidence 01246677888888765 99999999999999999999999999999999999
Q ss_pred CCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCCceEEccccccccChhhH
Q psy17125 572 KIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERI 649 (1281)
Q Consensus 572 ~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~ 649 (1281)
+||++++||++|++++.+| .|.|++++ +|++.|++.|++ .+++.+.+.|++|+|||||+||++++++|||++++.+
T Consensus 290 ~l~~~~~i~~~G~~~~~~~-~~~G~~~~-~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~ 367 (874)
T PRK05729 290 NLPMINIMDEDGTINENPG-EYQGLDRF-EARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPL 367 (874)
T ss_pred CCCcccccCCCCeEcCCCc-ccCCCCHH-HHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHH
Confidence 9999999999999999875 69999998 799999999999 4567788999999999999999999999999999999
Q ss_pred HHHHHHhhh--cccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec-CCeEEechhhHHHHHhhhhhcCCCCccC
Q psy17125 650 KPEALACLE--EVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD-GDTIIVNEANIKHFCTLIDEHGPDFWWS 726 (1281)
Q Consensus 650 ~~~~~e~~~--~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~-~~~i~v~~~~~~~i~~~~~~~g~d~~~~ 726 (1281)
+++++++++ +++++|+..++++.+||++++|||||||++||+|||+|+| ++++||+.+..+
T Consensus 368 ~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~v~~~~~~---------------- 431 (874)
T PRK05729 368 AKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDEDGEVYVGREEPE---------------- 431 (874)
T ss_pred HHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCCCcEEeCCcccc----------------
Confidence 999999996 4789999999999999999999999999999999999998 577888765310
Q ss_pred cCccccccccccccccccccccccccccCCcchhhhcc----------CCCccceeeccceeeehhhHHHHHHHHhcCCC
Q psy17125 727 LSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLK----------DKPAHVYMEGMDQINGWFMSSLLTSVALKHTA 796 (1281)
Q Consensus 727 ~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~----------~~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~ 796 (1281)
.+....+.+++|||||||||+++|...++ -||+|++++|+||++||+.+|++++..+.+++
T Consensus 432 ---------~~~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~ 502 (874)
T PRK05729 432 ---------AREKALLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQV 502 (874)
T ss_pred ---------cccccCeEeCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCC
Confidence 00012478899999999999987655543 18999999999999999999999999999999
Q ss_pred CCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCC
Q psy17125 797 PFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASK 876 (1281)
Q Consensus 797 Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~ 876 (1281)
||++|++||+|+|.+|+|||||+||+|+|.++++ +||+|++||||++.++.
T Consensus 503 Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~-----------------------------~yGaDalR~~ll~~~~~ 553 (874)
T PRK05729 503 PFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLID-----------------------------KYGADALRFTLAALASP 553 (874)
T ss_pred chhheEEeeeEECCCCCCcccCCCCCCCHHHHHH-----------------------------HhChHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999 99999999999999888
Q ss_pred CCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCC---CCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy17125 877 DPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSEST---GSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVL 953 (1281)
Q Consensus 877 ~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~---~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i 953 (1281)
++|++|+.+.+...+++++++||+.|++..++.++.... .......|+|++++++++++.+.++|++|+|+.|++.+
T Consensus 554 ~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l 633 (874)
T PRK05729 554 GRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARAL 633 (874)
T ss_pred CCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999999999999999999999987655443211 12356789999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCCCCcccccccccc
Q psy17125 954 LNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYL 1033 (1281)
Q Consensus 954 ~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~p 1033 (1281)
++|+++++||+|++..|+|++ + . .+.+++.++..+++.+++||+|||||+|||+|++|+.... ..+++.+.||
T Consensus 634 ~~f~~~~~~~~Yle~~k~~l~-~---~-~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~~~~--~~si~~~~~P 706 (874)
T PRK05729 634 YEFIWNEFCDWYLELAKPVLQ-E---A-AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAPLGI--EESIMLAPWP 706 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-h---h-HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhcccCCC--CCceeecCCC
Confidence 999999999999999999976 2 1 2567888999999999999999999999999999975421 2346677788
Q ss_pred ccc
Q psy17125 1034 QYS 1036 (1281)
Q Consensus 1034 ~~~ 1036 (1281)
.++
T Consensus 707 ~~~ 709 (874)
T PRK05729 707 EAD 709 (874)
T ss_pred CCC
Confidence 765
No 14
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.4e-127 Score=1244.80 Aligned_cols=661 Identities=25% Similarity=0.396 Sum_probs=576.6
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcc-------cCCCHHHH
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD-------KLLSPLDI 89 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~-------~~~~~~e~ 89 (1281)
++++|+|++||||+||.|||||++|++++|+++||+||+||+|+|++||||||+|+|.++++.++ .+++++++
T Consensus 46 ~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f 125 (1052)
T PRK14900 46 TRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAF 125 (1052)
T ss_pred CCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHH
Confidence 56889999999999999999999999999999999999999999999999999999998876542 24678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccc
Q psy17125 90 RKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELE 169 (1281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~ 169 (1281)
++.|++|++++++.|+++|++||+++||+| .|+|+||.|.++++|+|.+|+++||||++.++|+|||.|+|+|||+||+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~-~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~ 204 (1052)
T PRK14900 126 LERVWAWKEQYGSRIGEQHKALGASLDWQR-ERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVE 204 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchheecCC-CcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhc
Confidence 999999999999999999999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhc
Q psy17125 170 YKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTF 249 (1281)
Q Consensus 170 ~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~ 249 (1281)
|++...+..+||+|++.+ .+.+++||||||||||||+||+|||++++
T Consensus 205 ~~e~~~~~~~~i~f~l~~---------~~~~l~vaTTrPeTl~~~~avaV~P~~~~------------------------ 251 (1052)
T PRK14900 205 HEEAHQGELWSFAYPLAD---------GSGEIVVATTRPETMLGDTAVAVHPLDPR------------------------ 251 (1052)
T ss_pred ccCCCCCeEEEEEEEecC---------CCcEEEEEECchhhhhcceeEEECCCcHH------------------------
Confidence 886566777899999853 12477888888888888888888875320
Q ss_pred cCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcC
Q psy17125 250 QTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYS 329 (1281)
Q Consensus 250 ~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~ 329 (1281)
T Consensus 252 -------------------------------------------------------------------------------- 251 (1052)
T PRK14900 252 -------------------------------------------------------------------------------- 251 (1052)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhccccccc
Q psy17125 330 PDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRV 409 (1281)
Q Consensus 330 ~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~ 409 (1281)
T Consensus 252 -------------------------------------------------------------------------------- 251 (1052)
T PRK14900 252 -------------------------------------------------------------------------------- 251 (1052)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccC
Q psy17125 410 GITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG 489 (1281)
Q Consensus 410 ~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~ 489 (1281)
T Consensus 252 -------------------------------------------------------------------------------- 251 (1052)
T PRK14900 252 -------------------------------------------------------------------------------- 251 (1052)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeC-CccccCCCCceEecCCCCChhHHHHH
Q psy17125 490 ANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPA-GFVSSSKGTGLVHCAPAHGQDDFLLA 568 (1281)
Q Consensus 490 ~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~-~~V~~~~GTG~V~~~PaH~~~Dy~~~ 568 (1281)
.++|+|+++.||+++.. +|||.+ .||++++|||+||++||||++||+++
T Consensus 252 ----------------------------y~~L~G~~~~~Pl~~~~--ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~ 301 (1052)
T PRK14900 252 ----------------------------YMALHGKKVRHPITGRT--FPIVADAILVDPKFGTGAVKVTPAHDFNDFEVG 301 (1052)
T ss_pred ----------------------------HHHhcCCEEECCCCCCe--eEEEecccccCcCCCCCeEEecCCCChhHHHHH
Confidence 01256777888887765 999865 48999999999999999999999999
Q ss_pred HHcCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCCceEEccccccccCh
Q psy17125 569 LAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKPVILKASQQWFIDT 646 (1281)
Q Consensus 569 ~~~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~ 646 (1281)
++|+||++++||++|+|++.++ .|.|+.++ +|++.|++.|++ .+++.+.+.|++|+||||++||++++++||||++
T Consensus 302 ~~~~L~~~~~id~~G~~~~~~~-~~~Gl~~~-ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l 379 (1052)
T PRK14900 302 KRHGLEMITVIGPDGRMTAEAG-PLAGLDRF-EARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRI 379 (1052)
T ss_pred HHcCCCccceECCCcEEecCCc-ccCCcCHH-HHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeeh
Confidence 9999999999999999998764 69999997 799999999998 3566678999999999999999999999999999
Q ss_pred hhHHHHHHHhhhc--ccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec-CCeEEechhhHHHHHhhhhhcCCCC
Q psy17125 647 ERIKPEALACLEE--VNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD-GDTIIVNEANIKHFCTLIDEHGPDF 723 (1281)
Q Consensus 647 ~~~~~~~~e~~~~--~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~-~~~i~v~~~~~~~i~~~~~~~g~d~ 723 (1281)
+.+++++++++++ +.|+|+..++++.+||++++||||||||+||+|||+|+| ++.+.++...
T Consensus 380 ~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~~~~~v~~~~--------------- 444 (1052)
T PRK14900 380 EPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPDGHVTVARET--------------- 444 (1052)
T ss_pred HHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCCCcEEecccc---------------
Confidence 9999999999975 889999999999999999999999999999999999998 4544443210
Q ss_pred ccCcCccccccccccccccccccccccccccCCcchhhhcc------C----CCccceeeccceeeehhhHHHHHHHHhc
Q psy17125 724 WWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLK------D----KPAHVYMEGMDQINGWFMSSLLTSVALK 793 (1281)
Q Consensus 724 ~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~------~----~p~dl~~~G~Dii~~wf~~~l~~~~~l~ 793 (1281)
+ -.+..|.+..+.+++|||||||||+++|...++ + ||+|++++|+||++||+.+++++++.+.
T Consensus 445 ----~---~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~ 517 (1052)
T PRK14900 445 ----P---EACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFM 517 (1052)
T ss_pred ----c---ccccccCccceecCCceEEEEEcCChHHHHHHcCCCchHHHHhhCCchhhcccccHHhHHHHHHHHHHHHhc
Confidence 0 001112233578899999999999986554432 1 8999999999999999999999999999
Q ss_pred CCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhc
Q psy17125 794 HTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAH 873 (1281)
Q Consensus 794 ~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~ 873 (1281)
+..||++|++||||+|.+|+|||||+||+|+|.++++ +||+|++||||++.
T Consensus 518 ~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe-----------------------------~yGaDalR~~L~~~ 568 (1052)
T PRK14900 518 GEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITE-----------------------------QYGADALRFTLAAL 568 (1052)
T ss_pred CCCccceeEecccEECCCCCCccCCCCCCCCHHHHHH-----------------------------HhCcHHHHHHHHhc
Confidence 9999999999999999899999999999999999999 99999999999999
Q ss_pred CCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCC----CCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Q psy17125 874 ASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSEST----GSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARA 949 (1281)
Q Consensus 874 ~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~----~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~a 949 (1281)
++.++|++|+.+.++..++|++++||+.|++..++.++.... .......|+|++++++.++.++.++|++|+|+.|
T Consensus 569 ~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A 648 (1052)
T PRK14900 569 TAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDA 648 (1052)
T ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999998888999999999998877665553211 1234678999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCC--CCcccc
Q psy17125 950 SRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQG--TFSSFC 1027 (1281)
Q Consensus 950 i~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~--~~~s~~ 1027 (1281)
++.+++|+++++||+|++..+++++.+ +...+..++.++.++++.+++||+|||||+||+||+.|+.... ....++
T Consensus 649 ~~~i~~f~~~~~~n~Yie~~k~~l~~~--~~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~~~~~~~~SV 726 (1052)
T PRK14900 649 ANAVYAFVWHELCDWYIELAKEALASE--DPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASAWADSV 726 (1052)
T ss_pred HHHHHHHHHHhhhHHHHHhccHhhccC--CHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccCCCCCce
Confidence 999999998999999999999988764 2344556788999999999999999999999999999974211 112457
Q ss_pred ccccccccc
Q psy17125 1028 HFKVYLQYS 1036 (1281)
Q Consensus 1028 ~~~~~p~~~ 1036 (1281)
+.+.||.++
T Consensus 727 ~~~~wP~~~ 735 (1052)
T PRK14900 727 LAAEYPRKG 735 (1052)
T ss_pred eecCCCCCC
Confidence 778888765
No 15
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=8.2e-127 Score=1233.85 Aligned_cols=661 Identities=27% Similarity=0.468 Sum_probs=585.3
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcc------cCCCHHHHH
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD------KLLSPLDIR 90 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~------~~~~~~e~~ 90 (1281)
++++|+|++||||+||.|||||+++++++|+++||+||+|++|+|++||||||+|||.++++..+ .+++.+++.
T Consensus 31 ~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~ 110 (861)
T TIGR00422 31 NKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFR 110 (861)
T ss_pred CCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999998887754 235678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcccccccccccc
Q psy17125 91 KKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEY 170 (1281)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~ 170 (1281)
++|++|++++...+++++++||+++||+| .|+|+|+.|.++|+|+|.+|+++|+||++.++|+|||.|+|+|||+||+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r-~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~ 189 (861)
T TIGR00422 111 EKIWEWKEESGGTIKNQIKRLGASLDWSR-ERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEY 189 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCeeeecCC-CcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCcchHhHhhc
Confidence 99999999999999999999999999996 99999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhcc
Q psy17125 171 KPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQ 250 (1281)
Q Consensus 171 ~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~ 250 (1281)
++ ..++++||+|++.+ ..+.+++|||||||||+||+||+|||+.++
T Consensus 190 ~~-~~~~~~~i~f~~~~--------~~~~~l~vaTtrPeTl~~~~av~V~P~~~r------------------------- 235 (861)
T TIGR00422 190 KE-VKGKLYYIRYPLAN--------GSKDYLVVATTRPETMFGDTAVAVHPEDER------------------------- 235 (861)
T ss_pred cc-ccceEEEEEEEecC--------CCCCEEEEEeCCcchhhhCeEEEECCCchH-------------------------
Confidence 87 88999999999864 123578888888888888888888885320
Q ss_pred CCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCC
Q psy17125 251 TDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSP 330 (1281)
Q Consensus 251 ~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~ 330 (1281)
T Consensus 236 -------------------------------------------------------------------------------- 235 (861)
T TIGR00422 236 -------------------------------------------------------------------------------- 235 (861)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccc
Q psy17125 331 DAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVG 410 (1281)
Q Consensus 331 ~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~ 410 (1281)
T Consensus 236 -------------------------------------------------------------------------------- 235 (861)
T TIGR00422 236 -------------------------------------------------------------------------------- 235 (861)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCc
Q psy17125 411 ITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGA 490 (1281)
Q Consensus 411 ~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~ 490 (1281)
T Consensus 236 -------------------------------------------------------------------------------- 235 (861)
T TIGR00422 236 -------------------------------------------------------------------------------- 235 (861)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHH
Q psy17125 491 NVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALA 570 (1281)
Q Consensus 491 ~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~ 570 (1281)
.++|+|+.+.||+++.+ +|||+++||++++|||+||++||||++||+++++
T Consensus 236 ---------------------------y~~l~g~~~~~P~~~~~--ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~ 286 (861)
T TIGR00422 236 ---------------------------YKHLIGKKVILPLTGRK--IPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKR 286 (861)
T ss_pred ---------------------------HHHhcCCEEEcCCCCCc--ceeeecCCCCcccCCCceEecCCCChHHHHHHHH
Confidence 01256677888888765 9999999999999999999999999999999999
Q ss_pred cCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCCceEEccccccccChhh
Q psy17125 571 EKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTER 648 (1281)
Q Consensus 571 ~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~ 648 (1281)
|+||++++||.+|++++.+| .|.|++++ +|++.|++.|++ .+++.+.+.|++|+|||||+||++++++|||+++++
T Consensus 287 ~~l~~~~~id~~G~~~~~~~-~~~G~~~~-~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~ 364 (861)
T TIGR00422 287 HNLEFINILDEDGLLNENAG-KYQGLTRF-EARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEK 364 (861)
T ss_pred cCCCccceeCCCCeEcCCCc-ccCCcCHH-HhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHH
Confidence 99999999999999998885 59999997 899999999998 456778899999999999999999999999999999
Q ss_pred HHHHHHHhhh--cccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec--CCeEEechhhHHHHHhhhhhcCCCCc
Q psy17125 649 IKPEALACLE--EVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD--GDTIIVNEANIKHFCTLIDEHGPDFW 724 (1281)
Q Consensus 649 ~~~~~~e~~~--~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~--~~~i~v~~~~~~~i~~~~~~~g~d~~ 724 (1281)
++++++++++ +++++|++.++++.+||++++||||||||+||+|||+|+| ++++||+.+........ ..|
T Consensus 365 ~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~~~--~~~---- 438 (861)
T TIGR00422 365 LADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDDKT--NTG---- 438 (861)
T ss_pred HHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccchHHhhhhh--ccC----
Confidence 9999999997 5789999999999999999999999999999999999998 68888865433221110 001
Q ss_pred cCcCccccccccccccccccccccccccccCCcchhhhcc----------CCCccceeeccceeeehhhHHHHHHHHhcC
Q psy17125 725 WSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLK----------DKPAHVYMEGMDQINGWFMSSLLTSVALKH 794 (1281)
Q Consensus 725 ~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~----------~~p~dl~~~G~Dii~~wf~~~l~~~~~l~~ 794 (1281)
....+.|++|||||||||++++...++ -||+|++++|+||++||+.+++++++++.+
T Consensus 439 -------------~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~ 505 (861)
T TIGR00422 439 -------------PSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTG 505 (861)
T ss_pred -------------CcccEEECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcC
Confidence 013578899999999999986544432 189999999999999999999999999999
Q ss_pred CCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcC
Q psy17125 795 TAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHA 874 (1281)
Q Consensus 795 ~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~ 874 (1281)
+.||++|++||+++|.+|+|||||+||+|+|.++++ +||+|++||||++.+
T Consensus 506 ~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~-----------------------------~ygaDalR~~l~~~~ 556 (861)
T TIGR00422 506 QVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIE-----------------------------KYGADALRFTLASLV 556 (861)
T ss_pred CCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHH-----------------------------HhChHHHHHHHHhCC
Confidence 999999999999999899999999999999999999 999999999999999
Q ss_pred CCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCC--CCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q psy17125 875 SKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSE--STGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRV 952 (1281)
Q Consensus 875 ~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~--~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~ 952 (1281)
+.++|++|+.+.+..+++++++|||+.|++..+...+.. .........|+|++++++++++++.++|++|+|+.|++.
T Consensus 557 ~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~ 636 (861)
T TIGR00422 557 TPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLELSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKA 636 (861)
T ss_pred CCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 989999999999999999999999999998776544311 001235678999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCCCCccccccccc
Q psy17125 953 LLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVY 1032 (1281)
Q Consensus 953 i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~ 1032 (1281)
+++|+++++||+|++..|+|++.++ ...+..++.++.++++.+++||+|||||+||+||++|+... .+++.+.|
T Consensus 637 l~~f~~~~~~n~Yie~~k~~~~~~~--~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~~----~si~~~~~ 710 (861)
T TIGR00422 637 LYEFIWNDFCDWYIELVKYRLYNGN--EAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEGA----DSIMLQSY 710 (861)
T ss_pred HHHHHHHHHHHHHHHHhHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCcccC----CceeecCC
Confidence 9999889999999999999987643 34566788899999999999999999999999999997432 34667788
Q ss_pred ccccc
Q psy17125 1033 LQYSG 1037 (1281)
Q Consensus 1033 p~~~~ 1037 (1281)
|.+++
T Consensus 711 P~~~~ 715 (861)
T TIGR00422 711 PVVDA 715 (861)
T ss_pred CCccc
Confidence 87664
No 16
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.5e-126 Score=1227.73 Aligned_cols=657 Identities=26% Similarity=0.450 Sum_probs=568.0
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhc---c---cCCCHHHHH
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK---D---KLLSPLDIR 90 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~---~---~~~~~~e~~ 90 (1281)
++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++||||||+|+|.++++.. | ..+++++++
T Consensus 86 ~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~ 165 (958)
T PLN02943 86 GGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFT 165 (958)
T ss_pred CCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHH
Confidence 5688999999999999999999999999999999999999999999999999999998777664 2 245778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcccccccccccc
Q psy17125 91 KKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEY 170 (1281)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~ 170 (1281)
++|++|++++++.|+++|++||+++||+| .|+|+||.|.++++++|.+|+++|||||+.++|+|||.|+|+|||+||+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~-~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey 244 (958)
T PLN02943 166 KRVWEWKEKYGGTITNQIKRLGASCDWSR-ERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 244 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcceecCC-CcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhc
Confidence 99999999999999999999999999996 99999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCc-eEEEEecCceEEeehhhHHhhhhhc
Q psy17125 171 KPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALE-YSVASVKGANVIVAKCLVESLKWTF 249 (1281)
Q Consensus 171 ~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~-Y~~~~~~~~~~i~~~~~~~~~~~~~ 249 (1281)
++ ..+.++||+|++.+ ..+.+++|||||||||+||+||+|||+++ |.
T Consensus 245 ~e-~~~~~~~i~f~l~~--------~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~----------------------- 292 (958)
T PLN02943 245 SE-EPGTLYYIKYRVAG--------GSEDFLTIATTRPETLFGDVAIAVNPEDDRYS----------------------- 292 (958)
T ss_pred cc-ccccEEEEEEEEcC--------CCCCEEEEEeCChhhhhcceEEEECCCCHHHH-----------------------
Confidence 97 78899999999853 12247888888888888888888888654 21
Q ss_pred cCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcC
Q psy17125 250 QTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYS 329 (1281)
Q Consensus 250 ~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~ 329 (1281)
T Consensus 293 -------------------------------------------------------------------------------- 292 (958)
T PLN02943 293 -------------------------------------------------------------------------------- 292 (958)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhccccccc
Q psy17125 330 PDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRV 409 (1281)
Q Consensus 330 ~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~ 409 (1281)
T Consensus 293 -------------------------------------------------------------------------------- 292 (958)
T PLN02943 293 -------------------------------------------------------------------------------- 292 (958)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccC
Q psy17125 410 GITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG 489 (1281)
Q Consensus 410 ~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~ 489 (1281)
T Consensus 293 -------------------------------------------------------------------------------- 292 (958)
T PLN02943 293 -------------------------------------------------------------------------------- 292 (958)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCC-ccCcceeeeeCCccccCCCCceEecCCCCChhHHHHH
Q psy17125 490 ANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPIN-KEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLA 568 (1281)
Q Consensus 490 ~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~-~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~ 568 (1281)
.|+|+.+.||++ ++. +||++++||++++|||+||++||||++||+++
T Consensus 293 ------------------------------~l~g~~~~~Pl~~~~~--ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~ 340 (958)
T PLN02943 293 ------------------------------KYIGKMAIVPMTYGRH--VPIIADRYVDKDFGTGVLKISPGHDHNDYLLA 340 (958)
T ss_pred ------------------------------HHcCCEEECCCcCCCe--eeEEecCcccCCCCCceEEeCCCCChHHHHHH
Confidence 123556778885 544 99999999999999999999999999999999
Q ss_pred HHcCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCCceEEccccccccCh
Q psy17125 569 LAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKPVILKASQQWFIDT 646 (1281)
Q Consensus 569 ~~~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~ 646 (1281)
++||||++++||++|+|++.+ |+.++ +|++.|++.|++ .+++.+.+.|++|+|||||+|+++++++|||+++
T Consensus 341 ~~~~L~~~~~id~~G~~~~~~-----g~~~~-ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~ 414 (958)
T PLN02943 341 RKLGLPILNVMNKDGTLNEVA-----GLYWF-EAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTM 414 (958)
T ss_pred HHcCCCceeeeCCCceeeccC-----CccHH-HHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEH
Confidence 999999999999999998643 55565 899999999999 4667788999999999999999999999999999
Q ss_pred hhHHHHHHHhhh--cccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec----CCe-EEechhhHHHHHhhhhhc
Q psy17125 647 ERIKPEALACLE--EVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD----GDT-IIVNEANIKHFCTLIDEH 719 (1281)
Q Consensus 647 ~~~~~~~~e~~~--~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~----~~~-i~v~~~~~~~i~~~~~~~ 719 (1281)
+.++++++++++ +++++|+..++++.+||++++||||||||+||+|||+|++ |+. ..++....+.+.......
T Consensus 415 ~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 494 (958)
T PLN02943 415 EPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKAREKY 494 (958)
T ss_pred HHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHHHHhhhhc
Confidence 999999999996 4799999999999999999999999999999999999996 333 334333222221111111
Q ss_pred CCCCccCcCccccccccccccccccccccccccccCCcchhhhcc-------C----CCccceeeccceeeehhhHHHHH
Q psy17125 720 GPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLK-------D----KPAHVYMEGMDQINGWFMSSLLT 788 (1281)
Q Consensus 720 g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~-------~----~p~dl~~~G~Dii~~wf~~~l~~ 788 (1281)
|. ...+.+++|||||||||+++++..++ + ||+|++++|+||++||+.+|+++
T Consensus 495 g~-----------------~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~ 557 (958)
T PLN02943 495 GK-----------------DVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMM 557 (958)
T ss_pred CC-----------------chheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHh
Confidence 11 11357899999999999986333321 1 89999999999999999999999
Q ss_pred HHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHH
Q psy17125 789 SVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRW 868 (1281)
Q Consensus 789 ~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~ 868 (1281)
+..+.+++||+++++||+++|.+|+|||||+||+|+|.++++ +||+|++||
T Consensus 558 ~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~-----------------------------~ygaDalR~ 608 (958)
T PLN02943 558 GIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIK-----------------------------EFGTDALRF 608 (958)
T ss_pred hhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHH-----------------------------hcCChHHHH
Confidence 988889999999999999999999999999999999999999 999999999
Q ss_pred HHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCC--------------CCCC-CCcCcHHHHHHHHHHHHH
Q psy17125 869 WVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNH--------------SEST-GSISRYVDVYMLKRLCEF 933 (1281)
Q Consensus 869 ~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~--------------~~~~-~~~~~~~d~~il~~l~~~ 933 (1281)
|+++.++ ++|++|+.+.+..+++++++|||+.+|++.++.+. .... .......|+|++++++.+
T Consensus 609 ~l~~~~~-~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~ 687 (958)
T PLN02943 609 TLALGTA-GQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHEL 687 (958)
T ss_pred HHHhCCC-CCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCccccccccCHHHHHHHHHHHHH
Confidence 9998766 89999999999999999999999999998766321 1100 013467899999999999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHH
Q psy17125 934 QNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVY 1013 (1281)
Q Consensus 934 ~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~ 1013 (1281)
++++.++|++|+|+.|++.+++|+++++||+|++..|++++.++. ...+.+++.++..+++.+++||+|||||+|||+|
T Consensus 688 i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~-~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELw 766 (958)
T PLN02943 688 IDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGD-NSALSRAQAVLLYVFENILKLLHPFMPFVTEELW 766 (958)
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCc-hHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHH
Confidence 999999999999999999999999899999999999999886533 2335667889999999999999999999999999
Q ss_pred hhCCCCCCCCccccccccccccc
Q psy17125 1014 SHLPSRQGTFSSFCHFKVYLQYS 1036 (1281)
Q Consensus 1014 ~~L~~~~~~~~s~~~~~~~p~~~ 1036 (1281)
++|+... .+++.+.||.++
T Consensus 767 q~L~~~~----~si~~~~wP~~~ 785 (958)
T PLN02943 767 QALPYRK----EALIVSPWPQTS 785 (958)
T ss_pred HHcCCCC----CceeecCCCCCc
Confidence 9997432 245567788653
No 17
>KOG0432|consensus
Probab=100.00 E-value=9e-126 Score=1115.78 Aligned_cols=707 Identities=24% Similarity=0.413 Sum_probs=592.3
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhc----c---cCCCHHHHH
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK----D---KLLSPLDIR 90 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~----~---~~~~~~e~~ 90 (1281)
.+.|.++.||||++|.||||||++.++.|.++||+||.||.|+|.+|+||+|+.++.-++|.. | .+++.+++.
T Consensus 74 ~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~ 153 (995)
T KOG0432|consen 74 GGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFL 153 (995)
T ss_pred CCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHH
Confidence 577999999999999999999999999999999999999999999999999999765444433 2 357899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcccccccccccc
Q psy17125 91 KKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEY 170 (1281)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~ 170 (1281)
+++.+|-+++...+.+||++||.++||+| .++|+|+...+.|.++|.+|++.|+|||+.+.|+|||..+|++||.||++
T Consensus 154 ~~vw~Wk~e~g~~I~~Qlk~lGas~DW~r-e~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~ 232 (995)
T KOG0432|consen 154 KEVWEWKEEYGGRIYNQLKRLGASLDWDR-EAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVES 232 (995)
T ss_pred HHHHHHHHHhCccHHHHHHHhcCcccccH-hhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecc
Confidence 99999999999999999999999999997 99999999999999999999999999999999999999999999999998
Q ss_pred CCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhcc
Q psy17125 171 KPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQ 250 (1281)
Q Consensus 171 ~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~ 250 (1281)
.+. ++.+-+.|.
T Consensus 233 ~ei--------------------------------------~~~t~l~vp------------------------------ 244 (995)
T KOG0432|consen 233 VEI--------------------------------------PGRTLLSVP------------------------------ 244 (995)
T ss_pred eec--------------------------------------CCCceEecC------------------------------
Confidence 761 111111111
Q ss_pred CCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCC
Q psy17125 251 TDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSP 330 (1281)
Q Consensus 251 ~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~ 330 (1281)
| |.+|+
T Consensus 245 ----------G-------yd~~V--------------------------------------------------------- 250 (995)
T KOG0432|consen 245 ----------G-------YDTKV--------------------------------------------------------- 250 (995)
T ss_pred ----------C-------CCcce---------------------------------------------------------
Confidence 0 00000
Q ss_pred CCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccc
Q psy17125 331 DAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVG 410 (1281)
Q Consensus 331 ~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~ 410 (1281)
|-|+|+
T Consensus 251 -----------------------eFG~L~--------------------------------------------------- 256 (995)
T KOG0432|consen 251 -----------------------EFGVLY--------------------------------------------------- 256 (995)
T ss_pred -----------------------eeeeee---------------------------------------------------
Confidence 001111
Q ss_pred cccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCc
Q psy17125 411 ITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGA 490 (1281)
Q Consensus 411 ~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~ 490 (1281)
.+.|. +. ..+..|.|.||||+||+|.+||||||+++.
T Consensus 257 -------------~faY~-------------v~---------gs~~~i~VaTTRpET~lGDvAvAVhP~D~R-------- 293 (995)
T KOG0432|consen 257 -------------SFAYP-------------VE---------GSDEEIVVATTRPETILGDVAVAVHPDDDR-------- 293 (995)
T ss_pred -------------EEEEe-------------cc---------CCCCeEEEecCCccccccceeEEeCCCCcc--------
Confidence 11121 11 123479999999999999999999998772
Q ss_pred eEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHH
Q psy17125 491 NVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALA 570 (1281)
Q Consensus 491 ~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~ 570 (1281)
..+|+|+.++|||+++. +|||.+.+|++++|||+|+++||||++||++|++
T Consensus 294 ---------------------------Yk~lhGk~~~hP~~~r~--lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkR 344 (995)
T KOG0432|consen 294 ---------------------------YKHLHGKFVKHPFTGRK--LPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKR 344 (995)
T ss_pred ---------------------------cccccCceeecCCCCCc--cceeecccccccccccceEecCCCChhHHHHHHh
Confidence 24578899999999766 9999999999999999999999999999999999
Q ss_pred cCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhccccccccccc--cccCcccCCCCceEEccccccccChhh
Q psy17125 571 EKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQ--HSYPYDWRTKKPVILKASQQWFIDTER 648 (1281)
Q Consensus 571 ~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~--~~~p~~~Rsg~~v~~~~~~qWf~~~~~ 648 (1281)
||||.++|++++|.+++.+| +|.||++| +||++|++.|++..+.++... +..|+|+|||+.+++++.+|||+++++
T Consensus 345 h~L~~~ni~~~dG~l~~~~g-ef~Gm~RF-eAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~e 422 (995)
T KOG0432|consen 345 HNLEFINIFTDDGLLNNVCG-EFKGMKRF-EAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKE 422 (995)
T ss_pred cCCCceeEEcCCCceeccch-hccCcHHH-HHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHH
Confidence 99999999999999999987 89999999 799999999999776666554 457999999999999999999999999
Q ss_pred HHHHHHHhhh--cccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec---C----Ce-EEechhhHHHHHhhhhh
Q psy17125 649 IKPEALACLE--EVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD---G----DT-IIVNEANIKHFCTLIDE 718 (1281)
Q Consensus 649 ~~~~~~e~~~--~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~---~----~~-i~v~~~~~~~i~~~~~~ 718 (1281)
+.+++.++++ ++.+.|+..+.++..|+++.+|||||||.||||+||+|+. + +. .++....-+....+.+.
T Consensus 423 ma~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k 502 (995)
T KOG0432|consen 423 MAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEK 502 (995)
T ss_pred HHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHH
Confidence 9999999998 5789999999999999999999999999999999999765 1 22 23332222222222233
Q ss_pred cCCCCccCcCccccccccccccccccccccccccccCCcc------hhhhccC----CCccceeeccceeeehhhHHHHH
Q psy17125 719 HGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGIS------WSHVLKD----KPAHVYMEGMDQINGWFMSSLLT 788 (1281)
Q Consensus 719 ~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~------w~~~l~~----~p~dl~~~G~Dii~~wf~~~l~~ 788 (1281)
.|+. ....+.||.||+||||+||+. |+...++ ||.++..+|.||++||+.+|+|+
T Consensus 503 ~g~~---------------~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~sllETG~DILfFWVaRMvmL 567 (995)
T KOG0432|consen 503 FGPG---------------KEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETGHDILFFWVARMVML 567 (995)
T ss_pred hCCc---------------ccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCchhhhcCchHHHHHHHHHHHh
Confidence 2210 123468999999999999984 4443333 89999999999999999999999
Q ss_pred HHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCccccc--ccCcccccc--c----cc-ccccCCC
Q psy17125 789 SVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEK--SVGNVISAH--D----IT-QGAKKLP 859 (1281)
Q Consensus 789 ~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msk--s~gn~~~~~--~----~~-~~~~~i~ 859 (1281)
.+.+++++||++|++||+|+|.+|+|||||+||||||.|+|+|++ .++|.+ -.||+.+.. . .+ .-++|||
T Consensus 568 g~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gis-le~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIp 646 (995)
T KOG0432|consen 568 GLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGIS-LEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIP 646 (995)
T ss_pred hhhhcCCCCchheeechhhccccccccchhhccccCHHHHhcccc-HHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCc
Confidence 999999999999999999999999999999999999999999987 344444 257776431 1 11 2257999
Q ss_pred CCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcC-CCCCC----CCcCcHHHHHHHHHHHHHH
Q psy17125 860 AYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHN-HSEST----GSISRYVDVYMLKRLCEFQ 934 (1281)
Q Consensus 860 ~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~-~~~~~----~~~~~~~d~~il~~l~~~~ 934 (1281)
++|.|||||.||+.+....|++++...+.++++|||||||+.||++..+.+ |.+.. ......+|+||+++|+.++
T Consensus 647 eCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av 726 (995)
T KOG0432|consen 647 ECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWILSRLAEAV 726 (995)
T ss_pred ccchHHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986553 43322 2222338999999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHh
Q psy17125 935 NTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYS 1014 (1281)
Q Consensus 935 ~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~ 1014 (1281)
+.+.+.|++|+|..|..++..|++.+|||.|+|.+|+.++.++ ...+..+..+|+.++...++||+|||||+|||+||
T Consensus 727 ~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~--~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~q 804 (995)
T KOG0432|consen 727 EEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDS--EALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQ 804 (995)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc--HHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHH
Confidence 9999999999999999999999999999999999999887653 34566678899999999999999999999999999
Q ss_pred hCCCCCCCCcccccccccc
Q psy17125 1015 HLPSRQGTFSSFCHFKVYL 1033 (1281)
Q Consensus 1015 ~L~~~~~~~~s~~~~~~~p 1033 (1281)
+|+...+.-..++....||
T Consensus 805 rlP~r~~~~~~si~va~yP 823 (995)
T KOG0432|consen 805 RLPRRKGSKPASISVSPYP 823 (995)
T ss_pred hcccCCCCCCCceEecCCC
Confidence 9988776433345567788
No 18
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-124 Score=1205.70 Aligned_cols=684 Identities=26% Similarity=0.421 Sum_probs=590.7
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcc---cCCCHHHHHHHH
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD---KLLSPLDIRKKA 93 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~---~~~~~~e~~~~~ 93 (1281)
++++|+|++|||||||.|||||++|++++|+++||+||+||+|++++||||||+|||.+|+++.| +.++.+++++.|
T Consensus 36 ~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~ 115 (800)
T PRK13208 36 RKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELC 115 (800)
T ss_pred CCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999998654 345678899999
Q ss_pred HHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCCC
Q psy17125 94 KNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPD 173 (1281)
Q Consensus 94 ~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~~ 173 (1281)
++|++++++.++++|++||+++||+| +++|+||.|.++++|+|.+|+++|+||++.++|+|||.|+|+|||+||+|++
T Consensus 116 ~~~~~~~~~~~~~~~~~lg~s~Dw~~-~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~- 193 (800)
T PRK13208 116 RELTDEDEKKFRELWRRLGLSVDWSL-EYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYRE- 193 (800)
T ss_pred HHHHHHHHHHHHHHHHHhCeeeccCC-CcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCccchhhhcccc-
Confidence 99999999999999999999999996 9999999999999999999999999999999999999999999999999887
Q ss_pred CcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCc
Q psy17125 174 HVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDI 253 (1281)
Q Consensus 174 ~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 253 (1281)
+.+.++||||++.+ +.+++|||||||||+||+||+|||+.+.
T Consensus 194 ~~~~~~~ikf~~~~----------~~~l~v~TtrPeTl~g~~ai~v~p~~~~---------------------------- 235 (800)
T PRK13208 194 REGKLNYIKFPVED----------GEEIEIATTRPELLPACVAVVVHPDDER---------------------------- 235 (800)
T ss_pred ccceEEEEEEEecC----------CCEEEEEeCCcchhhhCeEEEECCCchH----------------------------
Confidence 88899999999752 2478888888888888888888885320
Q ss_pred eEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCC
Q psy17125 254 EVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAG 333 (1281)
Q Consensus 254 ~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~ 333 (1281)
T Consensus 236 -------------------------------------------------------------------------------- 235 (800)
T PRK13208 236 -------------------------------------------------------------------------------- 235 (800)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhccccccccccc
Q psy17125 334 PGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITH 413 (1281)
Q Consensus 334 ~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~ 413 (1281)
T Consensus 236 -------------------------------------------------------------------------------- 235 (800)
T PRK13208 236 -------------------------------------------------------------------------------- 235 (800)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEE
Q psy17125 414 DRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVI 493 (1281)
Q Consensus 414 ~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i 493 (1281)
T Consensus 236 -------------------------------------------------------------------------------- 235 (800)
T PRK13208 236 -------------------------------------------------------------------------------- 235 (800)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCC
Q psy17125 494 VAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKI 573 (1281)
Q Consensus 494 ~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~l 573 (1281)
.++|.|+++.||+++++ +||++++||++++|||+||++|+||++||+++++|+|
T Consensus 236 ------------------------~~~l~g~~~~~P~~~~~--ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l 289 (800)
T PRK13208 236 ------------------------YKHLVGKTAIVPLFGVE--VPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNL 289 (800)
T ss_pred ------------------------HHHhcCCEEEcCCCCCc--ceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCC
Confidence 01145667788888765 9999999999999999999999999999999999999
Q ss_pred CeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCCceEEccccccccChhhHHH
Q psy17125 574 PVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKP 651 (1281)
Q Consensus 574 pi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~ 651 (1281)
|++++||++|++++++| .|+|++++ +|++.|++.|++ .+++.+.+.|++|+|||||+||++++++||||+++++++
T Consensus 290 ~~~~~i~~~G~~~~~~g-~~~G~~~~-~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~ 367 (800)
T PRK13208 290 PTRIIIDEDGRMTEAAG-KLAGLTIE-EARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKE 367 (800)
T ss_pred CcccccCCCceEecCCc-ccCCCCHH-HHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHH
Confidence 99999999999998875 59999997 789999999998 456778899999999999999999999999999999999
Q ss_pred HHHHhhhcccccchhHHHHHHHHHHcCC-CcccccccCCCccceeEec--CCeEEechh-hHHHHHhhhhhcCCCCccCc
Q psy17125 652 EALACLEEVNFVPESAKKTLRDQIAQRP-YWCISRQRVWGVPIPVFYD--GDTIIVNEA-NIKHFCTLIDEHGPDFWWSL 727 (1281)
Q Consensus 652 ~~~e~~~~~~~~P~~~r~~~~~~l~~l~-DW~ISRqr~WG~pIP~~~~--~~~i~v~~~-~~~~i~~~~~~~g~d~~~~~ 727 (1281)
++++++++++++|++.++++.+||++++ ||||||||+||+|||+|+| ++.++++.+ .+++ +.|-+.
T Consensus 368 ~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~----------~~~~d~ 437 (800)
T PRK13208 368 ELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPV----------DPTKDE 437 (800)
T ss_pred HHHHhhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhcc----------Cchhhc
Confidence 9999999999999999999999999977 9999999999999999998 566655421 1000 001111
Q ss_pred CccccccccccccccccccccccccccCCcchhhhcc----------CCCccceeeccceeeehhhHHHHHHHHhcCCCC
Q psy17125 728 SVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLK----------DKPAHVYMEGMDQINGWFMSSLLTSVALKHTAP 797 (1281)
Q Consensus 728 ~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~----------~~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~P 797 (1281)
+. ......+....+.+++||+|+||||+++|.+.++ -||+|++++|+||+++||.++++++.++.+..|
T Consensus 438 ~~-~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~P 516 (800)
T PRK13208 438 PP-GYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLP 516 (800)
T ss_pred cc-cccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCC
Confidence 11 1112222224578899999999999876544332 179999999999999999999999999999999
Q ss_pred CceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCC
Q psy17125 798 FRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKD 877 (1281)
Q Consensus 798 f~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~ 877 (1281)
|+++++||++++.+|+|||||+||+|+|.++++ +||+|++|||++ .++..
T Consensus 517 f~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~-----------------------------~yg~D~lR~~l~-~~~~~ 566 (800)
T PRK13208 517 WKNIMISGMVLDPDGKKMSKSKGNVVTPEELLE-----------------------------KYGADAVRYWAA-SARLG 566 (800)
T ss_pred cceEEEeeEEECCCCCCCCCCCCCCCCHHHHHH-----------------------------HcCccHHHHHHh-cCCCC
Confidence 999999999998899999999999999999999 999999999999 77778
Q ss_pred CccccCcchhccchHHHHHHHHHHHHHHHhhcCCC-CCCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy17125 878 PTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHS-ESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNF 956 (1281)
Q Consensus 878 ~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~-~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f 956 (1281)
+|++|+.+.+..++++++|+||+++++.. ..+.. ..........|+|++++++.+++++.++|++|+|++|++.+++|
T Consensus 567 ~d~~fs~~~~~~~~~~l~kl~N~~r~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f 645 (800)
T PRK13208 567 SDTPFDEKQVKIGRRLLTKLWNASRFVLH-FSADPEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESF 645 (800)
T ss_pred CCceecHHHHHHHHHHHHHHHHHHHHHHh-cccccccCccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999998763 22210 01112356789999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCCCCccccccccccccc
Q psy17125 957 VVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYLQYS 1036 (1281)
Q Consensus 957 ~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~p~~~ 1036 (1281)
++++++|+|++..|+|++.++.. ..+.+++.++.++++.+++||+|||||+||++|++|+ . .+++.+.||.++
T Consensus 646 ~~~~~~n~Yie~~k~~~~~~~~~-~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~-~-----~si~~~~wP~~~ 718 (800)
T PRK13208 646 FWHVFCDDYLELVKSRAYGEDEE-EEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY-G-----GSVHRASWPEPD 718 (800)
T ss_pred HHHHhhHHHHHHhhHHhcCCCCc-HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC-C-----CceEeccCCCCC
Confidence 97789999999999998765432 2255678899999999999999999999999999997 1 246677888775
Q ss_pred cc-----hhheeeeeccccccccccc
Q psy17125 1037 GS-----IAKRILYCDSINGEARLSG 1057 (1281)
Q Consensus 1037 ~~-----i~kd~~y~~~vngk~R~s~ 1057 (1281)
+. +...+.++.+++++.|...
T Consensus 719 ~~~~~~~~~~~~~~v~~ii~~iR~~r 744 (800)
T PRK13208 719 EELIDEEDEELGELAKEILSAVRKYK 744 (800)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHH
Confidence 32 4466778888888877654
No 19
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.1e-120 Score=1181.08 Aligned_cols=732 Identities=20% Similarity=0.283 Sum_probs=569.6
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhc------c----------
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK------D---------- 81 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~------~---------- 81 (1281)
+++|++++||||+||.|||||++|++++|+++||+||+||+|+|++||||||+||+.+|++.. |
T Consensus 44 ~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~ 123 (1084)
T PLN02959 44 GEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDE 123 (1084)
T ss_pred CCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccc
Confidence 378999999999999999999999999999999999999999999999999999999886642 1
Q ss_pred ---------------cCCCHHHHHHHHHHHHHH-----------------------------HH----HHHHHHHHHcCc
Q psy17125 82 ---------------KLLSPLDIRKKAKNFALE-----------------------------TI----NTQKAEFESWGV 113 (1281)
Q Consensus 82 ---------------~~~~~~e~~~~~~~~~~~-----------------------------~~----~~~~~~l~~lgi 113 (1281)
+..++.+++++|++++.+ .+ ..++++|++||+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~ 203 (1084)
T PLN02959 124 DEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGL 203 (1084)
T ss_pred cccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCc
Confidence 123467788889888765 22 667899999999
Q ss_pred eeccCCCeeecCC--HHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCCCCcCccEE--EEEEeccC-
Q psy17125 114 LADWEHNCYHTFD--KEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIY--LKIKLNQV- 188 (1281)
Q Consensus 114 ~~DW~R~~~~T~~--~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~~~~~~~~~--vkf~l~~~- 188 (1281)
++||+| .|.|+| |.|.++|+|+|.+|+++|+||+|.+||+|||.|+|+|||+|+++.+ +++++.| |||++.+.
T Consensus 204 ~iDW~r-~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladhe~~~~e-~~~~~~y~~ikf~v~~~~ 281 (1084)
T PLN02959 204 GCDWRR-SFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRASGE-GVGPQEYVLIKMEVLPPF 281 (1084)
T ss_pred eEeCCC-CcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhhHHhcCC-CCCcceeEEEEEeecCcc
Confidence 999996 999999 9999999999999999999999999999999999999999999876 6677666 77887652
Q ss_pred ccccc-cCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEec-CceEEeehhhHHhhhhhcc----CCceEeecccCC
Q psy17125 189 PAHLL-EGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVK-GANVIVAKCLVESLKWTFQ----TDIEVVCDFPGQ 262 (1281)
Q Consensus 189 ~~~~~-~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~-~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~G~ 262 (1281)
+..+. -...++++++|||||||||||+||||||+.+|++++++ |+.+||++++++++..+.. .+++++.+++|+
T Consensus 282 ~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~ 361 (1084)
T PLN02959 282 PGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGY 361 (1084)
T ss_pred hhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHH
Confidence 11111 01246799999999999999999999999999999996 7899999999987654321 368999999999
Q ss_pred cccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCCCCCCCcccc
Q psy17125 263 YLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNIL 342 (1281)
Q Consensus 263 ~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~gl~~~ 342 (1281)
+|+|.+|.||++++. .+|++|++||++++|||+||||||||++||.++++++-..
T Consensus 362 ~L~G~~~~~Pl~~~~-~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~------------------------ 416 (1084)
T PLN02959 362 DLIGLPLKSPLAFNE-VIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKP------------------------ 416 (1084)
T ss_pred HhCCCEEECCCCCCc-ceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccch------------------------
Confidence 999999999998732 3899999999999999999999999999999865432000
Q ss_pred CCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccccCCccccccc
Q psy17125 343 GDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHDRPGTALAE 422 (1281)
Q Consensus 343 ~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~~~~t~lae 422 (1281)
. +| .+.++.
T Consensus 417 -------------~------------~~------------------------------------~kygi~---------- 425 (1084)
T PLN02959 417 -------------A------------LR------------------------------------AKYGVK---------- 425 (1084)
T ss_pred -------------h------------HH------------------------------------HHcCCC----------
Confidence 0 00 000000
Q ss_pred ccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEeehhhHHhH
Q psy17125 423 SELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENL 502 (1281)
Q Consensus 423 aeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~~ 502 (1281)
|
T Consensus 426 -------------------------------------------------------~------------------------ 426 (1084)
T PLN02959 426 -------------------------------------------------------D------------------------ 426 (1084)
T ss_pred -------------------------------------------------------c------------------------
Confidence 0
Q ss_pred HhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCC-hhHHHHHHHcCCCeeccc--
Q psy17125 503 KWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHG-QDDFLLALAEKIPVLNLI-- 579 (1281)
Q Consensus 503 ~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~-~~Dy~~~~~~~lpi~~vi-- 579 (1281)
+.+ -|+- .+||+. +|+.| .-+-.+++++++.-.+=-
T Consensus 427 --------~~~--------------~~~~----~i~iid---------------~~g~G~~~a~~~~~~~~i~s~~d~~~ 465 (1084)
T PLN02959 427 --------EWV--------------LPFE----VVPIIN---------------IPEFGDKSAEKVCEDLKIKSQNDKEK 465 (1084)
T ss_pred --------ccc--------------cccC----CcCccc---------------cCCCCcchhHHHHHhhcccccchhhH
Confidence 000 0000 011110 01110 111234455554322100
Q ss_pred -C-----------CCCccCCCCCCCCCCceeccccchhHHhhhccccccccccccccCcccCCCCceEEccccccccChh
Q psy17125 580 -T-----------NQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTE 647 (1281)
Q Consensus 580 -d-----------~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~ 647 (1281)
+ .+|.|. + +.|.|+.|+ +|++.|++.|++..+....++...|+|+|||++|++++++|||++++
T Consensus 466 l~~a~~~~Y~~~f~~g~m~--~-g~~~G~~v~-eAr~~Ii~~L~~~G~l~~~~ep~~pv~~R~g~~~~v~l~~QWFi~~~ 541 (1084)
T PLN02959 466 LAEAKRLTYLKGFTDGTML--V-GEYAGRKVQ-EAKPLIKKKLIEAGQAILYSEPEKKVMSRSGDECVVALTDQWYLTYG 541 (1084)
T ss_pred HHHHhhhhhhhcccccccc--C-cCcCCcCHH-HHHHHHHHHHHhCCCceeeeEcCCCeEECCCCEEEEeecCCeeEECC
Confidence 0 135553 3 469999997 79999999999854332222345689999999999999999999997
Q ss_pred --hHHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccccccCCCcccee---E-ec---CCeEEechhhHHHHHhhhhh
Q psy17125 648 --RIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPV---F-YD---GDTIIVNEANIKHFCTLIDE 718 (1281)
Q Consensus 648 --~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~---~-~~---~~~i~v~~~~~~~i~~~~~~ 718 (1281)
+|++++++++++++++|+..++++.+||++++||||||||+||+|||+ | ++ ++++|+++++++++.+..+.
T Consensus 542 ~~~~k~~a~~~l~~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~a~yti~~~~~~~~~ 621 (1084)
T PLN02959 542 EEEWKKKAEKCLSKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGDM 621 (1084)
T ss_pred chHHHHHHHHHHcccEEECHHHHHHHHHHHhCCCceeecccccCCCcCCcccceeeccCCCCceeechhhHHHHHhhhhc
Confidence 799999999999999999999999999999999999999999999994 2 23 46999999999888876554
Q ss_pred cCCCCccCcCccccccccccccccccccccccccccCCc-----chhh-hc----cC----CCccceeeccceeeehhhH
Q psy17125 719 HGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGI-----SWSH-VL----KD----KPAHVYMEGMDQINGWFMS 784 (1281)
Q Consensus 719 ~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l-----~w~~-~l----~~----~p~dl~~~G~Dii~~wf~~ 784 (1281)
.|.+.| ...+++ ...|++|+||+|++ +|+. .+ .+ ||+|++++|+||+++||.+
T Consensus 622 ~g~~~~-~i~~~~------------~~~dV~D~wF~Sg~~p~~t~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~ 688 (1084)
T PLN02959 622 YGKDKS-SIKPEQ------------MTDEVWDFVFCGGPLPKSSDIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTF 688 (1084)
T ss_pred cCCccc-cCChhh------------cCccceeEeecCCCcccccCCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHH
Confidence 555433 222211 14689999999987 2322 11 11 8999999999999999999
Q ss_pred HHHHHHHhcCCCCC-ceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCch
Q psy17125 785 SLLTSVALKHTAPF-RNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGV 863 (1281)
Q Consensus 785 ~l~~~~~l~~~~Pf-~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGa 863 (1281)
+++++.++++..|| +.+++||+|+ .+|+|||||+||+|+|.++++ +|||
T Consensus 689 ~l~~~~al~~~~P~p~~v~v~G~V~-~~G~KMSKSkGNvI~p~diI~-----------------------------kyGA 738 (1084)
T PLN02959 689 AIYNHTAIWAEEHWPRGFRCNGHLM-LNSEKMSKSTGNFLTLRQAIE-----------------------------EFSA 738 (1084)
T ss_pred HHHHHHHhcCCCCCCceEEEccEEe-cCCcCccccCCCcCCHHHHHH-----------------------------HhCc
Confidence 99999999999999 5799999999 899999999999999999999 9999
Q ss_pred hHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCC-CCCCCCcCcHHHHHHHHHHHHHHHHHHHHHh
Q psy17125 864 DVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNH-SESTGSISRYVDVYMLKRLCEFQNTMDTLYG 942 (1281)
Q Consensus 864 DalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~-~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e 942 (1281)
|++||||+++++..+|.+|+.+.++ ....+++|.++++..++... ...........|+|++++++.++++++++|+
T Consensus 739 DalRl~la~~~~~~~D~nF~~k~~n---~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~a~e 815 (1084)
T PLN02959 739 DATRFALADAGDGVDDANFVFETAN---AAILRLTKEIAWMEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNYE 815 (1084)
T ss_pred hHHHHHHhhcCCccCCCCccHHHHH---HHHHHHHHHHHHHHHhhhhhcccCCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888899999987754 35666777776665543210 0001123467899999999999999999999
Q ss_pred hccHHHHHHHHHHHHHHhhhhHH-HHhhcc--cccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCC
Q psy17125 943 EFQYARASRVLLNFVVNELSAFY-FTLVKD--RLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSR 1019 (1281)
Q Consensus 943 ~~~~~~ai~~i~~f~~~~l~~~Y-le~~k~--~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~ 1019 (1281)
+|+|++|++.. +| ++..++ +++++. .. ..+.++..+++.+++||||||||+|||+|+.|...
T Consensus 816 ~y~f~~A~~~~----------~Yel~~~k~~yr~~~~~-~~----~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~ 880 (1084)
T PLN02959 816 AMMFREALKSG----------FYDLQAARDEYRLSCGS-GG----MNRDLVWRFMDVQTRLITPICPHYAEHVWREILKK 880 (1084)
T ss_pred cccHHHHHHHH----------HHHHHHhHHHHhhcccc-ch----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCC
Confidence 99999999853 23 344444 444432 11 23567899999999999999999999999999522
Q ss_pred CCCCccccccccccccc
Q psy17125 1020 QGTFSSFCHFKVYLQYS 1036 (1281)
Q Consensus 1020 ~~~~~s~~~~~~~p~~~ 1036 (1281)
. .+++.+.||.++
T Consensus 881 ~----~sI~~~~wP~~~ 893 (1084)
T PLN02959 881 E----GFAVTAGWPVAG 893 (1084)
T ss_pred C----CeEEecCCCCCC
Confidence 2 356667788654
No 20
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=7.4e-121 Score=1133.32 Aligned_cols=571 Identities=42% Similarity=0.768 Sum_probs=488.5
Q ss_pred hhHHHHHHHHcCCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcc---
Q psy17125 5 SELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD--- 81 (1281)
Q Consensus 5 ~~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~--- 81 (1281)
+++|+++++..+++++|+|++||||+||.||||||+|++++|+++||+||+||+|++++||||||+|||.++++..+
T Consensus 9 ~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~ 88 (601)
T PF00133_consen 9 NKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKE 88 (601)
T ss_dssp TTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTS
T ss_pred CCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccc
Confidence 46888988887889999999999999999999999999999999999999999999999999999999999998875
Q ss_pred ----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecC
Q psy17125 82 ----KLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSP 157 (1281)
Q Consensus 82 ----~~~~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p 157 (1281)
..++++++++.|++|++++++.|+++|++||+++||+| .|.|+||.|.++++|+|.+|+++|+||++.++|+|||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~-~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p 167 (601)
T PF00133_consen 89 KKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDR-EYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCP 167 (601)
T ss_dssp HHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTC-EEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEET
T ss_pred cccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCC-ceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCc
Confidence 25788999999999999999999999999999999996 9999999999999999999999999999999999999
Q ss_pred CccccccccccccCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEe
Q psy17125 158 SSRTALAESELEYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIV 237 (1281)
Q Consensus 158 ~~~t~lad~ev~~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~ 237 (1281)
.|+|+|||+||+|++ ..++++||+|++.+ ..+++++||||||||||||+||+|||+.+|+ .+++.+|+
T Consensus 168 ~~~t~lsd~Ev~~~~-~~~~~~~v~f~~~~--------~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~---~~~~~~i~ 235 (601)
T PF00133_consen 168 SCQTALSDHEVEYKE-VKSPSIYVKFPLKD--------GEEVYLVIWTTRPETLPGNTAIAVNPDFDYV---INGERYIV 235 (601)
T ss_dssp TTTEEE-GGGEEEEE-EEEEEEEEEEEESS--------SSEEEEEEEES-GGGGGG-BEEEE-TTSEEE---ETTEEEEE
T ss_pred ccccchhhhhccccc-ccCceEEEEEEecC--------ccceEEEEEechhhHHhCCeeEEECCCccce---eCCeeehH
Confidence 999999999999987 78999999999965 3447999999999999999999999999999 78999999
Q ss_pred ehhhHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCC
Q psy17125 238 AKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIP 317 (1281)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~ 317 (1281)
++.+++.+..+..
T Consensus 236 ~~~~~~~~~~~~~------------------------------------------------------------------- 248 (601)
T PF00133_consen 236 AKDLVEKLSKQEK------------------------------------------------------------------- 248 (601)
T ss_dssp EHHHHHHHHTTTS-------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhh-------------------------------------------------------------------
Confidence 9987753211000
Q ss_pred cceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhh
Q psy17125 318 VLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 397 (1281)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~ 397 (1281)
T Consensus 249 -------------------------------------------------------------------------------- 248 (601)
T PF00133_consen 249 -------------------------------------------------------------------------------- 248 (601)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccC
Q psy17125 398 VCKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFN 477 (1281)
Q Consensus 398 ~~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~ 477 (1281)
T Consensus 249 -------------------------------------------------------------------------------- 248 (601)
T PF00133_consen 249 -------------------------------------------------------------------------------- 248 (601)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccceecccCceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecC
Q psy17125 478 PALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCA 557 (1281)
Q Consensus 478 p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~ 557 (1281)
.. +++++|++|+|++|.||+++.. +||++++||++++|||+||+|
T Consensus 249 ------------------------------~~---~~~~~g~~L~g~~~~~P~~~~~--~~vi~~~~V~~~~GTGiV~~~ 293 (601)
T PF00133_consen 249 ------------------------------TK---LEDFRGKELVGLKYIHPLTGRE--VPVIPDDFVDMDKGTGIVHSA 293 (601)
T ss_dssp ------------------------------SS---EEEEECHHHTTSEEE-TTSSSS--EEEEEETTS-SSSTTSEEEE-
T ss_pred ------------------------------hc---ccccCcceecCcEeccccccce--eEEEcccccccccchhhhhhc
Confidence 00 3455688999999999998865 999999999999999999999
Q ss_pred CCCChhHHHHHHHcCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCCceE
Q psy17125 558 PAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKPVI 635 (1281)
Q Consensus 558 PaH~~~Dy~~~~~~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~v~ 635 (1281)
||||++||+++++|++|++++||++|++++.++ .|.|++++ +|++.|++.|++ .+++.+.+.|++|+|||||+||+
T Consensus 294 Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~-~~~G~~v~-~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii 371 (601)
T PF00133_consen 294 PAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAG-KFKGMKVF-EAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPII 371 (601)
T ss_dssp TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCS-TTTTSBHH-HHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEE
T ss_pred ccCCHHHHHHHhhcCceeeEecCCCceEeeccc-ccCCceee-eccHHHHHHHHHhhhhccccccccccceecCCCCEEE
Confidence 999999999999999999999999999999884 69999997 799999999998 46778889999999999999999
Q ss_pred EccccccccChhhHHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec--CCeEEechhhHHHHH
Q psy17125 636 LKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD--GDTIIVNEANIKHFC 713 (1281)
Q Consensus 636 ~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~--~~~i~v~~~~~~~i~ 713 (1281)
+++++|||++++++++++++++++++++|+..++++.+||++++||||||||+||+|||+|+| ++.+.+..+......
T Consensus 372 ~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~~~ 451 (601)
T PF00133_consen 372 PRLTDQWFIKYDDWKKKALEALEKIKFYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGEVLVIESTIELIA 451 (601)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHTSEESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEEEECCGGHHHHHH
T ss_pred ecccceeEEecHHhHHHHHhhcccceEEcccchhhhhhhccccccchhhccCCCCccceeeecccCcccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 556677666665555
Q ss_pred hhhhhcCCCCccCcCccccccccccccccccccccccccccCCcchhhhccC-----------CCccceeeccceeeehh
Q psy17125 714 TLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKD-----------KPAHVYMEGMDQINGWF 782 (1281)
Q Consensus 714 ~~~~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~~-----------~p~dl~~~G~Dii~~wf 782 (1281)
..+...+.+.|+..+..+.+ ..++..+.+++||||+|||||++|...++. +|+|++++|+||+++||
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~W~ 529 (601)
T PF00133_consen 452 DRVEKEGIDAWLHKPAEDKL--PCCGGELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRGWF 529 (601)
T ss_dssp HHSTHHHHSCTSSHHHHHHH--TTTSSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTTHH
T ss_pred cccccccccccccccccccc--cccccceEEeeeeccccccccCCcccccccccccchhccccCCcccccCCccchhhHH
Confidence 55555566666665544444 346778899999999999999877665541 89999999999999999
Q ss_pred hHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCc
Q psy17125 783 MSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYG 862 (1281)
Q Consensus 783 ~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yG 862 (1281)
.++++.+.++.++.||++|++||+|+|.+|+|||||+||+|+|.++++ +||
T Consensus 530 ~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~-----------------------------~yG 580 (601)
T PF00133_consen 530 QSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIE-----------------------------KYG 580 (601)
T ss_dssp HHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHH-----------------------------HT-
T ss_pred HHhHhhccccccCCchheeeecccccccceeecccCCCcccCHHHHHH-----------------------------HhC
Confidence 999999999999999999999999999999999999999999999999 999
Q ss_pred hhHHHHHHHhcCCCCCccccC
Q psy17125 863 VDVLRWWVAAHASKDPTVPIG 883 (1281)
Q Consensus 863 aDalR~~l~~~~~~~~d~~f~ 883 (1281)
||++|||+++++...+|++||
T Consensus 581 aD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 581 ADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp HHHHHHHHHHHS-TTS-EEE-
T ss_pred cHHHHHHHHhcCCcccCcccC
Confidence 999999999888889999986
No 21
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.4e-119 Score=1147.67 Aligned_cols=697 Identities=23% Similarity=0.332 Sum_probs=552.8
Q ss_pred chhHH-HHHHHHc------------CCCCcEEEEcCCCCCCCc-CcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCC
Q psy17125 4 FSELY-SWQREAL------------NGKPEFILHDGPPYANGT-PHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG 69 (1281)
Q Consensus 4 ~~~~~-~~~~~~~------------~~~~~f~i~~~pP~~nG~-lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G 69 (1281)
|.++. +||+.+. +++++|++++|||||||. |||||+++++++|+++||+||+||+|++++|||+||
T Consensus 82 ~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~G 161 (963)
T PLN02563 82 FHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFG 161 (963)
T ss_pred HHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccC
Confidence 55666 6766553 256889999999999996 999999999999999999999999999999999999
Q ss_pred chHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 70 LPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 70 ~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
+|||.+|.+.+ .+| +.++.++++.|+++|++||+++||+| +++|++|.|++++||+|.+|+++|+||++
T Consensus 162 lPiE~~a~~~g---~~p-------~~~~~~~i~~~~~q~~~lG~s~DW~r-~~~T~dp~y~~~~q~~F~~L~~~GliY~~ 230 (963)
T PLN02563 162 LPAEQYAIETG---THP-------KITTLKNIARFRSQLKSLGFSYDWDR-EISTTEPEYYKWTQWIFLQLLKRGLAYQA 230 (963)
T ss_pred cHHHHHHHHcC---CCh-------HHhHHHHHHHHHHHHHHhCcEeeCCC-CeecCCHHHHHHHHHHHHHHHHCCCEEee
Confidence 99999998875 677 67899999999999999999999996 99999999999999999999999999999
Q ss_pred CcceeecCCccccccccccccCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEE
Q psy17125 150 LKPVYWSPSSRTALAESELEYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVAS 229 (1281)
Q Consensus 150 ~~~v~w~p~~~t~lad~ev~~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~ 229 (1281)
.++|+|||.|+|+||++||++
T Consensus 231 ~~~v~wcp~~~T~La~~Ev~~----------------------------------------------------------- 251 (963)
T PLN02563 231 EVPVNWCPALGTVLANEEVVD----------------------------------------------------------- 251 (963)
T ss_pred eeeeeecCCcCCCCCHHHhhc-----------------------------------------------------------
Confidence 999999999999999999851
Q ss_pred ecCceEEeehhhHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHH
Q psy17125 230 VKGANVIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFL 309 (1281)
Q Consensus 230 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~ 309 (1281)
T Consensus 252 -------------------------------------------------------------------------------- 251 (963)
T PLN02563 252 -------------------------------------------------------------------------------- 251 (963)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCCcceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcc
Q psy17125 310 LALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDT 389 (1281)
Q Consensus 310 ~~~~~~l~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~ 389 (1281)
++|+||+.+|+.+.+.|||+++
T Consensus 252 ----------------------------------------------------------~~~~~~~~~~~~~~~~q~f~~i 273 (963)
T PLN02563 252 ----------------------------------------------------------GLSERGGHPVIRKPMRQWMLKI 273 (963)
T ss_pred ----------------------------------------------------------CCCcCCCCceEEEecceeEEec
Confidence 2378899999999999999999
Q ss_pred cCchhhhhh-----------hhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCccccee
Q psy17125 390 ERIKPEALV-----------CKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHA 458 (1281)
Q Consensus 390 ~~~~~e~~~-----------~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i 458 (1281)
++|+.+++. ..||+|||||+.. .+++|++.+.. +...+..+
T Consensus 274 t~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~g------------------------~~i~F~~~~~~----~~~~~~~l 325 (963)
T PLN02563 274 TAYADRLLEDLDDLDWPESIKEMQRNWIGRSEG------------------------AELDFSVLDGE----GKERDEKI 325 (963)
T ss_pred chhHHHHHHhhhhcCCCHHHHHHHHHhccccce------------------------EEEEEEecCcc----ccCCCCEE
Confidence 999886654 4899999999743 23444443210 00023579
Q ss_pred EEeeccccCCCcccccccCCccccceecccCc------eEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCc
Q psy17125 459 LIWTTTPWSLPANQFIAFNPALEYSVASVKGA------NVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINK 532 (1281)
Q Consensus 459 ~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~------~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~ 532 (1281)
+|||||||||||++||||||+|+|+...+..+ .|+.+..+.+.+.+. .....++..+.|.++.||+++
T Consensus 326 ~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~------~~~~~k~g~~~g~~~~~P~~~ 399 (963)
T PLN02563 326 TVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERT------ELQKEKTGVFTGSYAINPATG 399 (963)
T ss_pred EEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhh------hccceecccccCcEEeccCCC
Confidence 99999999999999999999999986654322 222222222222211 112345667899999999988
Q ss_pred cCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCeecccCCC--------CccCCC-----CC---CCCCCc
Q psy17125 533 EQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQ--------GKYSPD-----AG---PGLEGL 596 (1281)
Q Consensus 533 ~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid~~--------G~~~~~-----~~---~~~~G~ 596 (1281)
.. +||+.++||++++|||+||+|||||++||++|++||||++++|+.+ |.|+++ .+ ..|.|+
T Consensus 400 ~~--iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~~Gl 477 (963)
T PLN02563 400 EA--IPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDINGL 477 (963)
T ss_pred Ce--eEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccccCceeEecCCCcccccCCc
Confidence 65 9999999999999999999999999999999999999999999432 333322 11 238888
Q ss_pred eeccccchhHHhhhccccccccccccccCcccCCCCceEEccccccccChhhHHHHHHHhhhcccccchhHHHHHHHHHH
Q psy17125 597 NILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIA 676 (1281)
Q Consensus 597 ~v~~~~~~~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l~ 676 (1281)
.+. +|++.|++.|++..+.. .+ +++
T Consensus 478 ~~~-eA~~~Ii~~L~~~g~~~--------------~~--------------------------v~y-------------- 502 (963)
T PLN02563 478 SSK-EAAKKVIEWLEETGNGK--------------KK--------------------------VNY-------------- 502 (963)
T ss_pred CHH-HHHHHHHHHHHhCCCCC--------------Ce--------------------------eEe--------------
Confidence 885 78888888887532210 00 110
Q ss_pred cCCCcccccccCCCccceeEec--CC-eEEechhhHHHHHh---hhhhcCCCCccCcCccccccccc--ccccccccccc
Q psy17125 677 QRPYWCISRQRVWGVPIPVFYD--GD-TIIVNEANIKHFCT---LIDEHGPDFWWSLSVEQLLNTSD--VNSNVTKSNDI 748 (1281)
Q Consensus 677 ~l~DW~ISRqr~WG~pIP~~~~--~~-~i~v~~~~~~~i~~---~~~~~g~d~~~~~~~~~l~~~~~--~~~~~~~~~dv 748 (1281)
+++||||||||+||+|||+|+| |+ .++++.+.++..++ .+...|...|+....++|.+..| |+..+.|++||
T Consensus 503 ~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDt 582 (963)
T PLN02563 503 KLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNT 582 (963)
T ss_pred cCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCc
Confidence 4789999999999999999998 45 67777655443332 12222333344444556655544 57789999999
Q ss_pred ccccccCCcchhhhc----c------------C-CCccceeecccee-------eehhhHHHHHHHHhcCCCCCceEEee
Q psy17125 749 LDIWFDSGISWSHVL----K------------D-KPAHVYMEGMDQI-------NGWFMSSLLTSVALKHTAPFRNVFLH 804 (1281)
Q Consensus 749 lD~WFdS~l~w~~~l----~------------~-~p~dl~~~G~Dii-------~~wf~~~l~~~~~l~~~~Pf~~v~~h 804 (1281)
|||||+| +|++++ . . +|+|+|++|.||+ |||+.+++..++ +.+++||++|++|
T Consensus 583 mDtw~~S--swy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~-~~~~ePfk~ll~q 659 (963)
T PLN02563 583 MPQWAGS--CWYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGV-VSTKEPFQCLVNQ 659 (963)
T ss_pred CCchhhc--cHHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHHHHHHHHHhhc-cCCcccHHHHhcc
Confidence 9999988 466543 0 1 7999999999995 888888887776 5678999999999
Q ss_pred ceeec---------cCCC---------------------------------------------cccccCCCccChhhhhc
Q psy17125 805 GFVVD---------EKGA---------------------------------------------KMSKSVGNVISAHDITQ 830 (1281)
Q Consensus 805 G~vld---------~~G~---------------------------------------------KMSKS~GNvv~p~dli~ 830 (1281)
|||+| .+|+ |||||+||+|+|.++++
T Consensus 660 GmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~ 739 (963)
T PLN02563 660 GMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVS 739 (963)
T ss_pred ceeecCccccceecCCCcCcccccccccccccccccccccccccccccccccCCcccccccccccccccCCcCCHHHHHH
Confidence 99997 6777 99999999999999999
Q ss_pred ccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcC
Q psy17125 831 GAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHN 910 (1281)
Q Consensus 831 g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~ 910 (1281)
+||||++|||+++.+++.+|..|+.+.+.++.+|++|+||++.........
T Consensus 740 -----------------------------kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~~~~ 790 (963)
T PLN02563 740 -----------------------------EYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLPDGS 790 (963)
T ss_pred -----------------------------HcCcHHHHHHHHhCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999999998754211111
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHH
Q psy17125 911 HSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTL 990 (1281)
Q Consensus 911 ~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l 990 (1281)
+...........|+|++++++.++++++++|++|+|++|++.+|+|+ +.+++++ . ..
T Consensus 791 ~~~~~~~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~-n~l~~~~--------------~--------~~ 847 (963)
T PLN02563 791 FRDGTVVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFT-NAAYKWD--------------K--------VP 847 (963)
T ss_pred cCccccccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHhCch--------------H--------HH
Confidence 21111111224688999999999999999999999999999999999 6654310 0 24
Q ss_pred HHHHHHHHHHhccccCccHHHHHhhCCCCCCCCccccccccccccccc--hhheeeeecccccccccccce
Q psy17125 991 HNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYLQYSGS--IAKRILYCDSINGEARLSGLH 1059 (1281)
Q Consensus 991 ~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~p~~~~~--i~kd~~y~~~vngk~R~s~q~ 1059 (1281)
.++++.+++||+|||||+|||||+.|+.. .+++.+.||.+++. +.+.+.+++|+|||.|..-..
T Consensus 848 ~~~l~~ll~LLaPf~PhiaEELW~~Lg~~-----~sv~~~~WP~~d~~~l~~~~~~~~vqiNGK~r~~i~v 913 (963)
T PLN02563 848 REAIEPFVLLLSPYAPHLAEELWFRLGHS-----NSLAYEPWPEANPSYLVDDTVVLPVQINGKTRGTIEV 913 (963)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHcCCC-----CeeeeCCCCCCCHHHhhcCceEEEEEECCEEeeEEEe
Confidence 67899999999999999999999999632 35667889988764 567889999999999886553
No 22
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=8e-119 Score=1142.79 Aligned_cols=694 Identities=23% Similarity=0.384 Sum_probs=556.2
Q ss_pred chhHH-HHHHHHc----------CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchH
Q psy17125 4 FSELY-SWQREAL----------NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI 72 (1281)
Q Consensus 4 ~~~~~-~~~~~~~----------~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pi 72 (1281)
|.++. +||.-+. +++++|++++|||||||.|||||++|++++|+++||+||+||+|++++||||||+||
T Consensus 3 ~~~iE~kwq~~W~~~~~f~~~~~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpi 82 (842)
T TIGR00396 3 HIEIEEKWQQKWKENKVFKFTDDSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPA 82 (842)
T ss_pred HHHHHHHHHHHHHhcCCcccCCCCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHH
Confidence 44555 5665542 357889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcc
Q psy17125 73 ELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKP 152 (1281)
Q Consensus 73 e~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~ 152 (1281)
|.+|++++ ++| ++|+.++++.|+++|++||+++||+| +++|++|.|+++++|+|.+|+++|+||++.++
T Consensus 83 e~~a~~~g---~~p-------~~~~~~~~~~~~~~~~~lG~~~Dw~~-~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~ 151 (842)
T TIGR00396 83 ENAAIKRG---IHP-------AKWTYENIANMKKQLQALGFSYDWDR-EIATCDPEYYKWTQWIFLELFEKGLAYVKEAD 151 (842)
T ss_pred HHHHHHcC---CCH-------HHHHHHHHHHHHHHHHHhCCcccCCC-CcccCCHHHHHHHHHHHHHHHHCCCeEeeccc
Confidence 99998875 788 67899999999999999999999996 99999999999999999999999999999999
Q ss_pred eeecCCccccccccccccCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecC
Q psy17125 153 VYWSPSSRTALAESELEYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG 232 (1281)
Q Consensus 153 v~w~p~~~t~lad~ev~~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~ 232 (1281)
|+|||.|+|+||++||++.
T Consensus 152 v~wcp~~~t~La~~ev~~~------------------------------------------------------------- 170 (842)
T TIGR00396 152 VNWCPNDGTVLANEQVDSD------------------------------------------------------------- 170 (842)
T ss_pred eEEeCCCCCCccHHHHhhc-------------------------------------------------------------
Confidence 9999999999999998410
Q ss_pred ceEEeehhhHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHH
Q psy17125 233 ANVIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLAL 312 (1281)
Q Consensus 233 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~ 312 (1281)
T Consensus 171 -------------------------------------------------------------------------------- 170 (842)
T TIGR00396 171 -------------------------------------------------------------------------------- 170 (842)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCCCcceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCc
Q psy17125 313 AEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERI 392 (1281)
Q Consensus 313 ~~~l~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~ 392 (1281)
++|||||.+|+.+.+.|||+++++|
T Consensus 171 -------------------------------------------------------g~~~~~g~~v~~~~~~~~f~~i~~~ 195 (842)
T TIGR00396 171 -------------------------------------------------------GRSWRGGTPVEKKELKQWFLKITAY 195 (842)
T ss_pred -------------------------------------------------------CccccCCCcceEeecceeEEehhhh
Confidence 2488999999999999999999999
Q ss_pred hhh------------hhhhhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEE
Q psy17125 393 KPE------------ALVCKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALI 460 (1281)
Q Consensus 393 ~~e------------~~~~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v 460 (1281)
+.+ ..++.||+||||++.. .+|+|++.+ .+..++|
T Consensus 196 ~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g------------------------~~i~f~~~~---------~~~~l~v 242 (842)
T TIGR00396 196 AEELLNDLEELDHWPESVKEMQRNWIGKSEG------------------------VEITFKIAD---------HKEKIAV 242 (842)
T ss_pred HHHHHHHHhhhccccHHHHHHHHhcccccce------------------------EEEEEEcCC---------CCCEEEE
Confidence 954 3456899999999732 234454422 1357999
Q ss_pred eeccccCCCcccccccCCccccceecccCceEEeehhhHHhHHhhc----cCCeeEeccccccccCCcccccCCCccCcc
Q psy17125 461 WTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKWTF----QTDIDVVCDFPGQYLQDITYIHPINKEQRD 536 (1281)
Q Consensus 461 ~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~----~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ 536 (1281)
||||||||||++||||||+++|+...... .+.++.+.+.. ..+...+.+.+|..|.|.++.||+++..
T Consensus 243 ~TTrP~Tl~g~~~iav~p~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~-- 314 (842)
T TIGR00396 243 FTTRPDTIFGVTYLALAPEHPLVEKIAEN------NPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLTGEK-- 314 (842)
T ss_pred EeCCcHHhhhccEEEECCCCHHHHhhhcc------hHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCCCCE--
Confidence 99999999999999999999998764221 22233333222 2233344456777899999999999865
Q ss_pred eeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCeecccCC------------CCccCCCCCCCCCCceeccccch
Q psy17125 537 LKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITN------------QGKYSPDAGPGLEGLNILGDGKD 604 (1281)
Q Consensus 537 ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid~------------~G~~~~~~~~~~~G~~v~~~~~~ 604 (1281)
+||+.++||++++|||+||+|||||++||++|++||||++++|+. +|++++. +.|.|+.+. +|++
T Consensus 315 ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~~--~~~~Gl~~~-~A~~ 391 (842)
T TIGR00396 315 IPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVNS--GEFNGLNSS-EARE 391 (842)
T ss_pred eEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEecc--hhcCCCCHH-HHHH
Confidence 999999999999999999999999999999999999999999984 5666643 469999986 7889
Q ss_pred hHHhhhccccccccccccccCcccCCCCceEEccccccccChhhHHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccc
Q psy17125 605 QVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCIS 684 (1281)
Q Consensus 605 ~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~IS 684 (1281)
.|++.|++..+. +.++.+ +++|||||
T Consensus 392 ~Ii~~L~~~g~~--------------~~~v~y----------------------------------------rlrDW~IS 417 (842)
T TIGR00396 392 AIIAMLEKEGKG--------------KRKVNY----------------------------------------RLRDWLFS 417 (842)
T ss_pred HHHHHHHHcCCC--------------CceEEe----------------------------------------ecccceee
Confidence 999999864331 111110 25799999
Q ss_pred cccCCCccceeEec--CCeEEechhhHHHHHh-hhhhcCCCCccCcCccccccccc--cccccccccccccccccCCcch
Q psy17125 685 RQRVWGVPIPVFYD--GDTIIVNEANIKHFCT-LIDEHGPDFWWSLSVEQLLNTSD--VNSNVTKSNDILDIWFDSGISW 759 (1281)
Q Consensus 685 Rqr~WG~pIP~~~~--~~~i~v~~~~~~~i~~-~~~~~g~d~~~~~~~~~l~~~~~--~~~~~~~~~dvlD~WFdS~l~w 759 (1281)
|||+||+|||+|+| |+.+.++.+.++..+. ..+..|.+..-..+.+++....| |+..+.|++|||||||||+ |
T Consensus 418 RQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSs--w 495 (842)
T TIGR00396 418 RQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSS--W 495 (842)
T ss_pred cccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCC--H
Confidence 99999999999998 4555566544433222 22222221000012233433333 5677899999999999985 6
Q ss_pred hhhc------------cC-----CCccceeeccceeeehhhH------HHHHHHHhcCCCCCceEEeeceeec----cCC
Q psy17125 760 SHVL------------KD-----KPAHVYMEGMDQINGWFMS------SLLTSVALKHTAPFRNVFLHGFVVD----EKG 812 (1281)
Q Consensus 760 ~~~l------------~~-----~p~dl~~~G~Dii~~wf~~------~l~~~~~l~~~~Pf~~v~~hG~vld----~~G 812 (1281)
++++ .+ +|+|+|++|.||+..|+.. .+....++.+++||++|++||||+| .+|
T Consensus 496 y~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G 575 (842)
T TIGR00396 496 YYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNG 575 (842)
T ss_pred HHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCC
Confidence 6543 01 7999999999998666433 2222233567899999999999998 889
Q ss_pred C---------------------------cccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhH
Q psy17125 813 A---------------------------KMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDV 865 (1281)
Q Consensus 813 ~---------------------------KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDa 865 (1281)
+ |||||+||+|+|.++++ +||||+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~-----------------------------~ygaDa 626 (842)
T TIGR00396 576 KSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVK-----------------------------KHGADA 626 (842)
T ss_pred CccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHH-----------------------------HcCchH
Confidence 8 99999999999999999 999999
Q ss_pred HHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17125 866 LRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQ 945 (1281)
Q Consensus 866 lR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~ 945 (1281)
+|||+++.++..+|++|+.+.+.+++++++|+||+++++.+++.++...........|+|+++++++++++++++|++|+
T Consensus 627 lRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~i~~v~~~~e~y~ 706 (842)
T TIGR00396 627 LRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDGKTYLTPTILEEAQKELRRDVHKFLKKVTEDLEKLE 706 (842)
T ss_pred HHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999998887899999999999999999999999999877664421001123457899999999999999999999988
Q ss_pred -HHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCCCCc
Q psy17125 946 -YARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFS 1024 (1281)
Q Consensus 946 -~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~ 1024 (1281)
|++|++.+++|+ |++++. . + . .++.+++..+++|||||+||+|||+|+.|+.. .
T Consensus 707 ~fn~ai~~l~~f~-n~L~~~-~---~-----------~-----~~l~~~l~~ll~lLaPf~PhiaEElW~~l~~~----~ 761 (842)
T TIGR00396 707 SFNTAISAMMILL-NALYKA-K---K-----------D-----ALYLEYLKGFLTVLSPFAPHLAEELWEKLGSE----P 761 (842)
T ss_pred hHHHHHHHHHHHH-HHHHhh-h---h-----------H-----HHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCC----C
Confidence 999999999999 666552 0 0 0 25788999999999999999999999999632 1
Q ss_pred cccccccccccccc--hhheeeeecccccccccccc
Q psy17125 1025 SFCHFKVYLQYSGS--IAKRILYCDSINGEARLSGL 1058 (1281)
Q Consensus 1025 s~~~~~~~p~~~~~--i~kd~~y~~~vngk~R~s~q 1058 (1281)
.+++.+.||.+++. ..+.+.+++|+|||.|..-.
T Consensus 762 ~sv~~~~wP~~d~~~l~~~~~~~~vqiNGK~r~~i~ 797 (842)
T TIGR00396 762 FIIKQAKWPKVDETALVEDKVTIVLQVNGKFKAKKT 797 (842)
T ss_pred CeeecCCCCCCCHHHHhhcceEEEEEEcCeEEEEEE
Confidence 35667889988765 45678899999999987544
No 23
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=3e-117 Score=1143.21 Aligned_cols=724 Identities=22% Similarity=0.308 Sum_probs=573.3
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcc------------cCC
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD------------KLL 84 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~------------~~~ 84 (1281)
++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|++||||||+||+..|++... .++
T Consensus 23 ~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i 102 (938)
T TIGR00395 23 DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAI 102 (938)
T ss_pred CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccC
Confidence 47889999999999999999999999999999999999999999999999999999988877321 246
Q ss_pred CHHHHHHHH--HHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcccc
Q psy17125 85 SPLDIRKKA--KNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTA 162 (1281)
Q Consensus 85 ~~~e~~~~~--~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~ 162 (1281)
++++|.+.| ++|++++...++++|++||+++||+| .|.|+||.|.++|+|+|.+|+++|+||++.++|+|||.|+|+
T Consensus 103 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r-~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~~~v~wcp~~~t~ 181 (938)
T TIGR00395 103 PREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRR-SFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNP 181 (938)
T ss_pred CHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCC-CccCCChhHHHHHHHHHHHHHHCCCEecCCeeEeecCCCCCC
Confidence 888998887 89999999999999999999999996 999999999999999999999999999999999999999999
Q ss_pred ccccccccCCC-CcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhh
Q psy17125 163 LAESELEYKPD-HVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCL 241 (1281)
Q Consensus 163 lad~ev~~~~~-~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~ 241 (1281)
|||+|+++.+. ..+.+++|||++.+ .+.++++||||||||+|++||||||+.+|++++++++.+||++++
T Consensus 182 lsd~e~~~~e~~~~~~~~~ikf~~~~---------~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~s~~~ 252 (938)
T TIGR00395 182 VEDHDLLSGEGVTIVEYILIKFELED---------GAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWITSKEA 252 (938)
T ss_pred CchhHhccCCccccceEEEEEEEcCC---------CceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEEeHHH
Confidence 99999987653 33577999999853 246899999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcC------
Q psy17125 242 VESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEK------ 315 (1281)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~------ 315 (1281)
++++..+. ..++++++++|++|+|+++.||+++ +.+||++++||++++|||+||||||||++||.++++.+
T Consensus 253 ~~~~~~q~-~~~~~~~~~~g~~l~G~~~~~P~~~--~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~ 329 (938)
T TIGR00395 253 FENLSYQK-LKYKPIEEVPGKQFIGKKVHNPVVG--PEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYL 329 (938)
T ss_pred HHhhhhcc-cceeEEEEEchHhccCCEEECCCCC--CeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhc
Confidence 99877653 3488999999999999999999986 68999999999999999999999999999999987642
Q ss_pred --------CCcceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhh
Q psy17125 316 --------IPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFI 387 (1281)
Q Consensus 316 --------l~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~ 387 (1281)
+|++.+++.+|
T Consensus 330 gi~~~~~~~~~i~ii~~~~------------------------------------------------------------- 348 (938)
T TIGR00395 330 GIKPVVIDIEPVPLIHTDG------------------------------------------------------------- 348 (938)
T ss_pred CCcchhcccCCccceecCC-------------------------------------------------------------
Confidence 22222221110
Q ss_pred cccCchhhhhhhhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccC
Q psy17125 388 DTERIKPEALVCKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWS 467 (1281)
Q Consensus 388 ~~~~~~~e~~~~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~T 467 (1281)
T Consensus 349 -------------------------------------------------------------------------------- 348 (938)
T TIGR00395 349 -------------------------------------------------------------------------------- 348 (938)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccCCccccceecccCceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCcccc
Q psy17125 468 LPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSS 547 (1281)
Q Consensus 468 l~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~ 547 (1281)
...+.+.+.++++..+...+...+.+.+. ..|+.-+
T Consensus 349 ----------------------~g~~~a~~~~~~~~i~~~~d~~~l~~a~~-----~~y~~~f----------------- 384 (938)
T TIGR00395 349 ----------------------YGDLPAKEIVEEKGIKSQKDKNLLEEATK-----ILYKEEY----------------- 384 (938)
T ss_pred ----------------------CCcccHHHHHHHhcCCCchhhhHHHHHHH-----HHhhhhc-----------------
Confidence 00001111111111000000000000000 0000000
Q ss_pred CCCCceEecCCCCChhHHHHHHHcCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcccccccccccc-ccCc
Q psy17125 548 SKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQH-SYPY 626 (1281)
Q Consensus 548 ~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~-~~p~ 626 (1281)
.+|.|+..+ +.|.|+++. +|++.|++.|++..+....+++ ..|+
T Consensus 385 ---------------------------------~~G~m~~~~-~~~~G~~v~-ear~~i~~~L~~~g~~~~~~~~~~~~v 429 (938)
T TIGR00395 385 ---------------------------------HTGVMIYNI-PPYKGMKVS-EAKEKVKADLIDAGLADVMYEFSESPV 429 (938)
T ss_pred ---------------------------------cCceeccCC-cccCCcCHH-HhHHHHHHHHHHCCCceEeeecCCCCc
Confidence 134454443 358999997 7999999999985444444554 5688
Q ss_pred ccCCCCceEEc-cccccccChh--hHHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccccccCCCcccee---Eec--
Q psy17125 627 DWRTKKPVILK-ASQQWFIDTE--RIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPV---FYD-- 698 (1281)
Q Consensus 627 ~~Rsg~~v~~~-~~~qWf~~~~--~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~---~~~-- 698 (1281)
|||||+||+++ +++|||++++ ++++++++++++++++|+..++++.+||++++||||||||+||+|||+ |++
T Consensus 430 ~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ies 509 (938)
T TIGR00395 430 ICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIES 509 (938)
T ss_pred EecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHHHHHHHHHHhhhhhcccccccccCcccceeecEEeee
Confidence 99999999998 9999999998 699999999999999999999999999999999999999999999996 443
Q ss_pred --CCeEEechhhHHHHHhhhhhcCCCCccCcCccccccccccccccccccccccccccCCcchhhhcc----CCCcccee
Q psy17125 699 --GDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLK----DKPAHVYM 772 (1281)
Q Consensus 699 --~~~i~v~~~~~~~i~~~~~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~----~~p~dl~~ 772 (1281)
++++||+++++.++++.. +. ..+.+.+..++. -+.++.+++++|+++.. +..... -||+|+++
T Consensus 510 lsdstiY~~~~~i~~~l~~~---~~------~~~~l~~ev~D~-~~~~~~~~~~t~~~~~~-~~~~~~ef~~~yP~D~~~ 578 (938)
T TIGR00395 510 LSDSTIYMAYYTIAHYLNKD---YY------GNEQMTDEFFDY-IFLGKGDVKNTNIPLPA-IQKLRREFEYWYPLDWRI 578 (938)
T ss_pred cchhhhhhhhccHHHHhhcc---CC------ChHHCCcccCce-EEECCCChhhcCCCHHH-HHHHHHHHhhcCCceEEE
Confidence 578999999887766421 11 111111111100 01112233444443210 111111 18999999
Q ss_pred eccceeeehhhHHHHHHHHhcCCCCC-ceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccc
Q psy17125 773 EGMDQINGWFMSSLLTSVALKHTAPF-RNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDI 851 (1281)
Q Consensus 773 ~G~Dii~~wf~~~l~~~~~l~~~~Pf-~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~ 851 (1281)
+|+||+++|...+++.+.++....|| +.+++|||+++ +|+|||||+||+|+|.++++
T Consensus 579 ~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~-~G~KMSKSlGNvI~p~d~i~--------------------- 636 (938)
T TIGR00395 579 SGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVML-EGKKMSKSKGNVLTLEQAVE--------------------- 636 (938)
T ss_pred EeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEe-CCccccCcCCCCCCHHHHHH---------------------
Confidence 99999999998888888888766554 89999999995 99999999999999999999
Q ss_pred cccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHHHHHHHH
Q psy17125 852 TQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKRLC 931 (1281)
Q Consensus 852 ~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~il~~l~ 931 (1281)
+||||++||||+++++..+|++|+.+.+.++.+++++++|+++++..... ..........|+|++++++
T Consensus 637 --------~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~---~~~~~~~~~~D~wlls~l~ 705 (938)
T TIGR00395 637 --------KFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKESN---LETGEETSFIDRWLESRMN 705 (938)
T ss_pred --------HcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcc---cCCCccCChHHHHHHHHHH
Confidence 99999999999999888999999999999999999999999988765321 1111134678999999999
Q ss_pred HHHHHHHHHHhhccHHHHH-HHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHH
Q psy17125 932 EFQNTMDTLYGEFQYARAS-RVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAE 1010 (1281)
Q Consensus 932 ~~~~~v~~~~e~~~~~~ai-~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~lae 1010 (1281)
.+++++.++|++|+|++|+ ..++.|+ +. +|+|++..+++ ...++.++++.+++||+|||||+||
T Consensus 706 ~~i~~v~~a~e~~~~~~Al~~~l~~~~-~~-~n~Yl~~~~~~-------------~~~~l~~~l~~~~~LLaP~~P~~aE 770 (938)
T TIGR00395 706 AAIKETYEAMENFQTRKAVKYALFDLQ-AD-VDWYRRRGGVN-------------HKDVLARYLETWIKLLAPFAPHFAE 770 (938)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH-HH-HHHHHHhCcch-------------HHHHHHHHHHHHHHHhcCcccHHHH
Confidence 9999999999999999999 6688888 33 79998753221 1236889999999999999999999
Q ss_pred HHHhhCCCCCCCCcccccccccccccc
Q psy17125 1011 EVYSHLPSRQGTFSSFCHFKVYLQYSG 1037 (1281)
Q Consensus 1011 el~~~L~~~~~~~~s~~~~~~~p~~~~ 1037 (1281)
++|+.|+.. .+++.+.||.+++
T Consensus 771 eiw~~Lg~~-----~sv~~~~wP~~~~ 792 (938)
T TIGR00395 771 EMWEEVGNE-----GFVSLAKFPEASE 792 (938)
T ss_pred HHHHHcCCC-----CeEEecCCCCCCc
Confidence 999999632 3566778887654
No 24
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-115 Score=1124.45 Aligned_cols=664 Identities=23% Similarity=0.332 Sum_probs=562.2
Q ss_pred CcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcc------------cCCCHHHHHHH--HHHHHHH
Q psy17125 34 PHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD------------KLLSPLDIRKK--AKNFALE 99 (1281)
Q Consensus 34 lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~------------~~~~~~e~~~~--~~~~~~~ 99 (1281)
|||||++|++++|+++||+||+||+|+|++||||||+|||..|++... .+++.++|.+. +++|+++
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 799999999999999999999999999999999999999998765320 03677777654 5999999
Q ss_pred HHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCCCCcCcc-
Q psy17125 100 TINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKS- 178 (1281)
Q Consensus 100 ~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~~~~~~~- 178 (1281)
+...++++|++||+++||+| .|.|+||.|.++++|+|.+|+++|+||++.++|+|||.|+|+|||+|+++.+ .++++
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r-~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e-~~~~~~ 158 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRR-EFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGE-EPEIVE 158 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCC-CeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCC-CCCcce
Confidence 99999999999999999996 9999999999999999999999999999999999999999999999998764 44444
Q ss_pred -EEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCceEee
Q psy17125 179 -IYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIEVVC 257 (1281)
Q Consensus 179 -~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 257 (1281)
++|||+ . ..+.++++|||||||||||+||||||+.+|++++++|+.||+++++++.+..+.
T Consensus 159 ~~~ikf~-~---------~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~-------- 220 (897)
T PRK12300 159 YTLIKFE-E---------SEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQD-------- 220 (897)
T ss_pred EEEEEEe-C---------CCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCc--------
Confidence 689998 1 135799999999999999999999999999999999999999998765321000
Q ss_pred cccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCCCCCC
Q psy17125 258 DFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLE 337 (1281)
Q Consensus 258 ~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~ 337 (1281)
T Consensus 221 -------------------------------------------------------------------------------- 220 (897)
T PRK12300 221 -------------------------------------------------------------------------------- 220 (897)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccccCCcc
Q psy17125 338 GLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHDRPG 417 (1281)
Q Consensus 338 gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~~~~ 417 (1281)
T Consensus 221 -------------------------------------------------------------------------------- 220 (897)
T PRK12300 221 -------------------------------------------------------------------------------- 220 (897)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEeehh
Q psy17125 418 TALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKC 497 (1281)
Q Consensus 418 t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~ 497 (1281)
T Consensus 221 -------------------------------------------------------------------------------- 220 (897)
T PRK12300 221 -------------------------------------------------------------------------------- 220 (897)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcC-----
Q psy17125 498 LVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEK----- 572 (1281)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~----- 572 (1281)
.+++++++++|++|+|+.+.||+.+.. +||++++||++++|||+||+|||||++||+++++++
T Consensus 221 ----------~~~~~~~~~~G~~l~G~~~~~Pl~~~~--ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~ 288 (897)
T PRK12300 221 ----------RDVEIIEEIKGSELIGKKVKNPVTGKE--VPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKEL 288 (897)
T ss_pred ----------CCceEEEEeehHHhcCCEEECCCCCCe--EEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhcccccc
Confidence 012345667899999999999998754 999999999999999999999999999999999998
Q ss_pred ---CCeeccc-----------------------C---------------CCCccCCCCCCCCCCceeccccchhHHhhhc
Q psy17125 573 ---IPVLNLI-----------------------T---------------NQGKYSPDAGPGLEGLNILGDGKDQVLHLVE 611 (1281)
Q Consensus 573 ---lpi~~vi-----------------------d---------------~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~ 611 (1281)
||+++++ | .+|+|++.+| .|.|+.+. +|++.|++.|+
T Consensus 289 ~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g-~~~G~~v~-eA~~~I~~~L~ 366 (897)
T PRK12300 289 LDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTG-EYAGKPVR-EAREKITKDLI 366 (897)
T ss_pred ccccCCcceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeeccc-CcCCeEHH-HHHHHHHHHHH
Confidence 7766555 3 4788887764 69999997 89999999999
Q ss_pred cc--cccccccccccCcccCCCCceEEcc-ccccccChh--hHHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccccc
Q psy17125 612 PD--VLWTENYQHSYPYDWRTKKPVILKA-SQQWFIDTE--RIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQ 686 (1281)
Q Consensus 612 ~~--~~~~~~~~~~~p~~~Rsg~~v~~~~-~~qWf~~~~--~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRq 686 (1281)
+. +++...+.| +|+|||||+||+++. ++|||++++ ++++++++++++++++|+..++++.+||++++|||||||
T Consensus 367 ~~g~~~~~~~~~~-~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq 445 (897)
T PRK12300 367 EKGIADIMYEFSN-RPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRACARR 445 (897)
T ss_pred HCCCeEEEEecCC-CCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHccCEEECHHHHHHHHHHHhhhhhcceeec
Confidence 84 334333445 578889999999975 699999997 799999999999999999999999999999999999999
Q ss_pred cCCCcccee---Eec----CCeEEechhhHHHHHhhhhhcCCCCccCcCccccccccccccccccccccccccccCCcch
Q psy17125 687 RVWGVPIPV---FYD----GDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISW 759 (1281)
Q Consensus 687 r~WG~pIP~---~~~----~~~i~v~~~~~~~i~~~~~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w 759 (1281)
|+||+|||+ |.+ ++++||+.+++.+.++. .| .++++|++..++...+.. .+.+++|++||++|
T Consensus 446 r~WGtpiP~~~~w~~esl~ds~iY~~~~~i~~~l~~---~g------~~~~~l~~~~~D~~~~~~-~~~~~~~~~sg~p~ 515 (897)
T PRK12300 446 RGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHKIRE---YG------IKPEQLTPEFFDYVFLGK-GDPEEVSKKTGIPK 515 (897)
T ss_pred cccCCcCCccCCEEeeeccccchhhhHHHHHHHHHH---cC------CChHHCChhhCceEEeCC-CccccCchhcCCCH
Confidence 999999996 544 67899998887765432 12 234445443332222222 25678899998766
Q ss_pred hhhc------cC-CCccceeeccceeeehhhHHHHHHHHhcCCCCC-ceEEeeceeeccCCCcccccCCCccChhhhhcc
Q psy17125 760 SHVL------KD-KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPF-RNVFLHGFVVDEKGAKMSKSVGNVISAHDITQG 831 (1281)
Q Consensus 760 ~~~l------~~-~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf-~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g 831 (1281)
..+. .. ||+|++++|+||+++|+.++++++.++.+..|+ +++++|||+++ +|+|||||+||+|+|.++++
T Consensus 516 ~~~~~~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~- 593 (897)
T PRK12300 516 EILEEMREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIE- 593 (897)
T ss_pred HHHHHHHHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHH-
Confidence 5432 11 899999999999999988889899999887776 89999999997 89999999999999999999
Q ss_pred cccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCC
Q psy17125 832 AKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNH 911 (1281)
Q Consensus 832 ~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~ 911 (1281)
+||||++||||+++++..+|.+|+.+.+..+.++++|++|++++..+...
T Consensus 594 ----------------------------~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~-- 643 (897)
T PRK12300 594 ----------------------------EYGADVVRLYLTSSAELLQDADWREKEVESVRRQLERFYELAKELIEIGG-- 643 (897)
T ss_pred ----------------------------HcChHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCC--
Confidence 99999999999999888999999999999999999999999988764321
Q ss_pred CCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHH
Q psy17125 912 SESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLH 991 (1281)
Q Consensus 912 ~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~ 991 (1281)
.......|+|++++++++++++.++|++|+|++|++.++.++++. +|+|++..++ .++.+++
T Consensus 644 ----~~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~-~n~Yi~~~k~-------------~~~~~l~ 705 (897)
T PRK12300 644 ----EEELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLND-LRWYLRRVGE-------------ANNKVLR 705 (897)
T ss_pred ----ccccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHhcch-------------HHHHHHH
Confidence 113467899999999999999999999999999999998777565 5899987664 3556799
Q ss_pred HHHHHHHHHhccccCccHHHHHhhCCCCCCCCcccccccccccccc
Q psy17125 992 NIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYLQYSG 1037 (1281)
Q Consensus 992 ~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~p~~~~ 1037 (1281)
++++.+++||+|||||+||++|+.|+.. .+++.+.||.+++
T Consensus 706 ~~l~~~~~lLaPf~P~~aEeiw~~L~~~-----~sv~~~~wP~~~~ 746 (897)
T PRK12300 706 EVLEIWIRLLAPFTPHLAEELWHKLGGE-----GFVSLEKWPEPDE 746 (897)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHcCCC-----CeEEeCCCCCCCc
Confidence 9999999999999999999999999632 3566788887664
No 25
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.3e-115 Score=1108.76 Aligned_cols=690 Identities=24% Similarity=0.371 Sum_probs=553.7
Q ss_pred CchhHH-HHHHHHcC---------CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchH
Q psy17125 3 GFSELY-SWQREALN---------GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI 72 (1281)
Q Consensus 3 ~~~~~~-~~~~~~~~---------~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pi 72 (1281)
+|.++. +||..+.+ .+++||+++|||||||.|||||++|++++|+++||+||+|++|++++||||||+||
T Consensus 6 ~~~~iE~~w~~~W~~~~~f~~~~~~~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpi 85 (805)
T PRK00390 6 NPKEIEKKWQKYWEENKTFKTTEDSSKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPA 85 (805)
T ss_pred CHHHHHHHHHHHHHHCCCcccCccCCCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHH
Confidence 355565 66655431 23579999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcc
Q psy17125 73 ELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKP 152 (1281)
Q Consensus 73 e~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~ 152 (1281)
|.+|++++ ++| ++|++++++.|+++|++||+++||+| +++|+||.|.++++++|.+|+++|+||++.++
T Consensus 86 e~~a~~~g---~~~-------~~~~~~~~~~~~~~~~~lGi~~Dw~~-~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~ 154 (805)
T PRK00390 86 ENAAIKTG---THP-------AEWTYENIANMKKQLKSLGFSYDWSR-EIATCDPEYYKWTQWIFLKLYEKGLAYRKESP 154 (805)
T ss_pred HHHHHHcC---CCH-------HHHHHHHHHHHHHHHHHhCCcccCCC-CeecCCHHHHHHHHHHHHHHHHCCCEEEecCE
Confidence 99998875 677 67899999999999999999999995 99999999999999999999999999999999
Q ss_pred eeecCCccccccccccccCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecC
Q psy17125 153 VYWSPSSRTALAESELEYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG 232 (1281)
Q Consensus 153 v~w~p~~~t~lad~ev~~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~ 232 (1281)
|+|||.|+|+||++||+.
T Consensus 155 v~wcp~~~t~La~~ev~~-------------------------------------------------------------- 172 (805)
T PRK00390 155 VNWCPVDGTVLANEQVID-------------------------------------------------------------- 172 (805)
T ss_pred EEecCCcCCCCCHHHhhC--------------------------------------------------------------
Confidence 999999999999999851
Q ss_pred ceEEeehhhHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHH
Q psy17125 233 ANVIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLAL 312 (1281)
Q Consensus 233 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~ 312 (1281)
T Consensus 173 -------------------------------------------------------------------------------- 172 (805)
T PRK00390 173 -------------------------------------------------------------------------------- 172 (805)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCCCcceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCc
Q psy17125 313 AEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERI 392 (1281)
Q Consensus 313 ~~~l~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~ 392 (1281)
++|+||+.+++.+.+.|||+++++|
T Consensus 173 -------------------------------------------------------~~~~~~~~~~~~~~~~~~f~~i~~~ 197 (805)
T PRK00390 173 -------------------------------------------------------GRCWRCGAPVEKKELRQWFLKITDY 197 (805)
T ss_pred -------------------------------------------------------CeecccCCeeEEEecceeeEecchh
Confidence 1267778888888889999999888
Q ss_pred hhhh------------hhhhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEE
Q psy17125 393 KPEA------------LVCKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALI 460 (1281)
Q Consensus 393 ~~e~------------~~~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v 460 (1281)
+.++ .+..+|++|||++.. .+++|++.+ .+..++|
T Consensus 198 ~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~------------------------~~i~f~~~~---------~~~~l~v 244 (805)
T PRK00390 198 ADELLDDLDKLEDWPEKVKTMQRNWIGRSEG------------------------AEVTFKVED---------SDEKIEV 244 (805)
T ss_pred HHHHHHHHHhhccCcHHHHHHHHhhccccce------------------------EEEEEEccC---------CCCEEEE
Confidence 6543 456789999998632 244554432 2357999
Q ss_pred eeccccCCCcccccccCCccccceecccCceEEeehhhHHhHHhhccC-CeeEeccccccccCCcccccCCCccCcceee
Q psy17125 461 WTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKWTFQT-DIDVVCDFPGQYLQDITYIHPINKEQRDLKL 539 (1281)
Q Consensus 461 ~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~-~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipI 539 (1281)
||||||||||++||||||+++|+....++. . .++++++++....+. ...++++++|. |+|.++.||+++.. +||
T Consensus 245 ~TTrPeTl~g~~aiav~p~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~g~~~~~P~~~~~--ipi 319 (805)
T PRK00390 245 FTTRPDTLFGATYLVLAPEHPLVEKLAEQN-P-AVAAFIEECKKKSDLERQTETKEKTGV-FTGLYAIHPLTGEK--IPV 319 (805)
T ss_pred EeCCchHhhcceEEEECCCChhHHhhhcch-H-HHHHHHHHHhhhcchhhhhcccceeee-ecCcEEECCCCCCe--eeE
Confidence 999999999999999999999988765422 1 133344433332222 12345678997 99999999998765 999
Q ss_pred eeCCccccCCCCceEecCCCCChhHHHHHHHcCCCeecccCCCCc--------cCCCC----CCCCCCceeccccchhHH
Q psy17125 540 LPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGK--------YSPDA----GPGLEGLNILGDGKDQVL 607 (1281)
Q Consensus 540 i~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid~~G~--------~~~~~----~~~~~G~~v~~~~~~~v~ 607 (1281)
+.++||++++|||+||+|||||++||++|++|+||++++||.+|. |+.+- .+.|.|+.+. +|++.|+
T Consensus 320 ~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~-~a~~~Ii 398 (805)
T PRK00390 320 WIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSE-EAKEAII 398 (805)
T ss_pred EEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEeccccCCCCHH-HHHHHHH
Confidence 999999999999999999999999999999999999999986552 22210 1468999986 7888999
Q ss_pred hhhccccccccccccccCcccCCCCceEEccccccccChhhHHHHHHHhhhcccccchhHHHHHHHHHHcCCCccccccc
Q psy17125 608 HLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQR 687 (1281)
Q Consensus 608 ~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr 687 (1281)
+.|++..+. +.++.+ +++||||||||
T Consensus 399 ~~L~~~g~~--------------~~~v~~----------------------------------------~l~DW~ISRQR 424 (805)
T PRK00390 399 AWLEEKGLG--------------KRKVNY----------------------------------------RLRDWGISRQR 424 (805)
T ss_pred HHHHHcCCC--------------CCceEE----------------------------------------ECCCccccccc
Confidence 998853331 111111 25799999999
Q ss_pred CCCccceeEec--CCeEEechhhHHH-HHhhhhhcCCCCccCcCccccccccc--cccccccccccccccccCCcchhhh
Q psy17125 688 VWGVPIPVFYD--GDTIIVNEANIKH-FCTLIDEHGPDFWWSLSVEQLLNTSD--VNSNVTKSNDILDIWFDSGISWSHV 762 (1281)
Q Consensus 688 ~WG~pIP~~~~--~~~i~v~~~~~~~-i~~~~~~~g~d~~~~~~~~~l~~~~~--~~~~~~~~~dvlD~WFdS~l~w~~~ 762 (1281)
+||+|||+|+| |+.+.++.+.+.. +...++..|.+.|+ ....++.+..| |+..+.|++|||||||||+ |+.+
T Consensus 425 ~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSs--w~~~ 501 (805)
T PRK00390 425 YWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPL-AKHPEWVNVTCPKCGKPARRETDTMDTFVGSS--WYYL 501 (805)
T ss_pred cCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChh-hhchhhhCCCccccCCCceeCCcccccccccc--cHHH
Confidence 99999999998 5776776654432 22233334444444 33445554443 4677899999999999995 5543
Q ss_pred c---c---------C-----CCccceeeccceeeehhhHH-----HHHHH-HhcCCCCCceEEeeceeeccCCCcccccC
Q psy17125 763 L---K---------D-----KPAHVYMEGMDQINGWFMSS-----LLTSV-ALKHTAPFRNVFLHGFVVDEKGAKMSKSV 819 (1281)
Q Consensus 763 l---~---------~-----~p~dl~~~G~Dii~~wf~~~-----l~~~~-~l~~~~Pf~~v~~hG~vld~~G~KMSKS~ 819 (1281)
+ + + ||+|+|++|.||+..|+... ++..+ .+.+++||++|++|||| |||||+
T Consensus 502 ~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v------KMSKS~ 575 (805)
T PRK00390 502 RYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV------KMSKSK 575 (805)
T ss_pred HhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE------EeCCCC
Confidence 2 1 0 79999999999986654432 22222 24578999999999999 999999
Q ss_pred CCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHH
Q psy17125 820 GNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRS 899 (1281)
Q Consensus 820 GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n 899 (1281)
||+|+|.++++ +||||++|||++++++..+|++|+.+.+.+++++++|+||
T Consensus 576 GN~i~p~~~i~-----------------------------~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~ 626 (805)
T PRK00390 576 GNVVDPDDIIE-----------------------------KYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWR 626 (805)
T ss_pred CCCCCHHHHHH-----------------------------HcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999888899999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCC
Q psy17125 900 SLRYLLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSIN 979 (1281)
Q Consensus 900 ~~r~~~~~l~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~ 979 (1281)
++++..+....+. ......|+|+++++++++++++++|++|+|++|++.+++|+ ++++++| +
T Consensus 627 ~~~~~~~~~~~~~----~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~-n~lsk~~-~------------ 688 (805)
T PRK00390 627 LVVDAKGEAGALD----VAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV-NALYKAE-D------------ 688 (805)
T ss_pred HHHHhhhcccccC----cccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHH-H------------
Confidence 9999655443322 12346899999999999999999999999999999999999 7887765 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCCCCccccccccccccccc--hhheeeeeccccccccccc
Q psy17125 980 GEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYLQYSGS--IAKRILYCDSINGEARLSG 1057 (1281)
Q Consensus 980 ~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~p~~~~~--i~kd~~y~~~vngk~R~s~ 1057 (1281)
..+..++.++++.+++||+|||||+|||+|+.|+.. .+++.+.||.+++. ..+.+.+.+|+||+.|..-
T Consensus 689 ----~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~~-----~sv~~~~wP~~~~~~~~~~~~~~~iqingk~r~~i 759 (805)
T PRK00390 689 ----EQDKAVLREALEILVRLLAPFAPHLAEELWEKLGHE-----GSIANAPWPTADEAALVEDEVTIVVQVNGKVRGKI 759 (805)
T ss_pred ----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC-----CeeEecCCCCCCHHHhhhhccEEEEEEccceeEEE
Confidence 124557899999999999999999999999999632 35667889988764 4566889999999988765
Q ss_pred c
Q psy17125 1058 L 1058 (1281)
Q Consensus 1058 q 1058 (1281)
.
T Consensus 760 ~ 760 (805)
T PRK00390 760 E 760 (805)
T ss_pred E
Confidence 4
No 26
>KOG0434|consensus
Probab=100.00 E-value=2.8e-114 Score=984.38 Aligned_cols=723 Identities=25% Similarity=0.465 Sum_probs=625.8
Q ss_pred HHHcCCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhccc-------CC
Q psy17125 12 REALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDK-------LL 84 (1281)
Q Consensus 12 ~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~-------~~ 84 (1281)
.+..+++|+|.+.||||+++|.+|.||+++.+|+|++.||..|+||.|.+.+||||||+|+|....|.+|- .+
T Consensus 31 lk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~km 110 (1070)
T KOG0434|consen 31 LKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKM 110 (1070)
T ss_pred HHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHHHHHH
Confidence 34447999999999999999999999999999999999999999999999999999999999998888861 12
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcccccc
Q psy17125 85 SPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALA 164 (1281)
Q Consensus 85 ~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~la 164 (1281)
.-.+...+|+..+.++...++++..|||-++|++ +.|.|++|.|.+.|||+|++|++||++|||-+.++||..|.|+||
T Consensus 111 GI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~-ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~TPLS 189 (1070)
T KOG0434|consen 111 GIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFD-NDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTTPLS 189 (1070)
T ss_pred hHHhHhHHHHHHHHHHHHHHHHHHHhhccceecc-CCcceecHHHHHHHHHHHHHHHhcCceecceeeeccccccCCccc
Confidence 2334467899999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred cccc--ccCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEec--CceEEeehh
Q psy17125 165 ESEL--EYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVK--GANVIVAKC 240 (1281)
Q Consensus 165 d~ev--~~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~--~~~~i~~~~ 240 (1281)
+-|- .|++ +.+++++|.||+.+ ...+.+++|||||||||+|.|++|||+..|++++.+ |..||++++
T Consensus 190 NFEa~QNYKd-V~DPav~v~F~li~--------~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~es 260 (1070)
T KOG0434|consen 190 NFEAQQNYKD-VPDPAVFVAFPLIG--------DPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMES 260 (1070)
T ss_pred chhcccCccc-CCCCeEEEEeeccC--------CcceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHH
Confidence 8775 6888 89999999999975 347899999999999999999999999999999876 889999999
Q ss_pred hHHhhhhh-ccCCceEeecccCCcccccccccCCc-----ccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHc
Q psy17125 241 LVESLKWT-FQTDIEVVCDFPGQYLQDITYIHPIN-----KEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAE 314 (1281)
Q Consensus 241 ~~~~~~~~-~~~~~~~~~~~~G~~l~~~~~~~P~~-----~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~ 314 (1281)
++..+... -..+++|+..|+|++|.|.+|.++|- .+.+.+.++.++||+.+.|||||||||+.|++||++|+++
T Consensus 261 rl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~ 340 (1070)
T KOG0434|consen 261 RLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVAN 340 (1070)
T ss_pred HHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHc
Confidence 88765332 23568999999999999999998873 3568899999999999999999999999999999999877
Q ss_pred CCCcceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchh
Q psy17125 315 KIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKP 394 (1281)
Q Consensus 315 ~l~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~ 394 (1281)
|+--
T Consensus 341 giI~---------------------------------------------------------------------------- 344 (1070)
T KOG0434|consen 341 GIIR---------------------------------------------------------------------------- 344 (1070)
T ss_pred Cccc----------------------------------------------------------------------------
Confidence 6310
Q ss_pred hhhhhhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCccccc
Q psy17125 395 EALVCKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFI 474 (1281)
Q Consensus 395 e~~~~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i 474 (1281)
+
T Consensus 345 -------------~------------------------------------------------------------------ 345 (1070)
T KOG0434|consen 345 -------------K------------------------------------------------------------------ 345 (1070)
T ss_pred -------------C------------------------------------------------------------------
Confidence 0
Q ss_pred ccCCccccceecccCceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceE
Q psy17125 475 AFNPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLV 554 (1281)
Q Consensus 475 ~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V 554 (1281)
++ .
T Consensus 346 -------------------------------------------d~-----------------~----------------- 348 (1070)
T KOG0434|consen 346 -------------------------------------------DS-----------------L----------------- 348 (1070)
T ss_pred -------------------------------------------CC-----------------C-----------------
Confidence 00 0
Q ss_pred ecCCCCChhHHHHHHHcCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCC
Q psy17125 555 HCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKK 632 (1281)
Q Consensus 555 ~~~PaH~~~Dy~~~~~~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~ 632 (1281)
+.|+||++|+|+.+. ++|+|.-|. +|.+.||+.|++ +++....+.||||+||||.+
T Consensus 349 --------------------~~cpVDe~G~~Tsev-~dfaG~YVK-DaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDT 406 (1070)
T KOG0434|consen 349 --------------------PPCPVDESGLFTSEV-TDFAGQYVK-DADKLIIRSLKASGRLVKASQITHSYPFCWRSDT 406 (1070)
T ss_pred --------------------CCCccccCCcccccc-ccccceeec-cchHHHHHHHHhcCceeeeeeeeeccCceecCCC
Confidence 136789999999988 579999995 899999999997 78999999999999999999
Q ss_pred ceEEccccccccChhhHHHHHHHhhhcccccchhHH-HHHHHHHHcCCCcccccccCCCccceeEec-CCeEEechhhHH
Q psy17125 633 PVILKASQQWFIDTERIKPEALACLEEVNFVPESAK-KTLRDQIAQRPYWCISRQRVWGVPIPVFYD-GDTIIVNEANIK 710 (1281)
Q Consensus 633 ~v~~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r-~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~-~~~i~v~~~~~~ 710 (1281)
|+++++.+.||++++.+.+++++...+..|+|...| +++.+||++.+||.|||.|+||+|||.|+. |..-.|.-.++.
T Consensus 407 PLiYraVPsWFVrVk~~v~~ll~nn~~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~ 486 (1070)
T KOG0434|consen 407 PLIYRAVPSWFVRVKNIVDQLLRNNMKTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIK 486 (1070)
T ss_pred hHHHhhccHhhhhHHHHHHHHHhcccccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccCCceEEEeccHH
Confidence 999999999999999999999999999999999987 779999999999999999999999999997 444444444555
Q ss_pred HHHhhhhhcCCCCccCcCcccccccc---------ccccccccccccccccccCCcchhhhcc-----------CCCccc
Q psy17125 711 HFCTLIDEHGPDFWWSLSVEQLLNTS---------DVNSNVTKSNDILDIWFDSGISWSHVLK-----------DKPAHV 770 (1281)
Q Consensus 711 ~i~~~~~~~g~d~~~~~~~~~l~~~~---------~~~~~~~~~~dvlD~WFdS~l~w~~~l~-----------~~p~dl 770 (1281)
.+..+- +..+.+++.+. ...+.+.|..+++|+||+||+++|.-.. .+|+|+
T Consensus 487 eLEeLS---------G~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~fPadF 557 (1070)
T KOG0434|consen 487 ELEELS---------GVKITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADF 557 (1070)
T ss_pred HHHHhc---------CCcchhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhcCchHh
Confidence 554321 22344444332 2346678889999999999997554321 189999
Q ss_pred eeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCccccccc
Q psy17125 771 YMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHD 850 (1281)
Q Consensus 771 ~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~ 850 (1281)
..+|.||.|+||...+..+.++++++||++++++|+|+..+|+||||++.|..+|..+++
T Consensus 558 IaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iin-------------------- 617 (1070)
T KOG0434|consen 558 IAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIIN-------------------- 617 (1070)
T ss_pred hhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHH--------------------
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCchhHHHHHHHhcCC-CCCccccCcchhccc-hHHHHHHHHHHHHHHHhhcCCCCC---------CCCcC
Q psy17125 851 ITQGAKKLPAYGVDVLRWWVAAHAS-KDPTVPIGKNILNSS-QDDVQKIRSSLRYLLGVLHNHSES---------TGSIS 919 (1281)
Q Consensus 851 ~~~~~~~i~~yGaDalR~~l~~~~~-~~~d~~f~~~~l~~~-~~~~~kl~n~~r~~~~~l~~~~~~---------~~~~~ 919 (1281)
+|||||||+||+++.. ......|.++.+.+. .+.+--+||.++|+.++...+... .....
T Consensus 618 ---------kYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~ 688 (1070)
T KOG0434|consen 618 ---------KYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSS 688 (1070)
T ss_pred ---------hhcchheeeeeecCccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccccc
Confidence 9999999999998765 457889999988774 457788999999999876432211 12356
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHH
Q psy17125 920 RYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLR 999 (1281)
Q Consensus 920 ~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~ 999 (1281)
+.+|+||++..++++.-+++.|++|++..++-.+.+|+ +++.|||+.+.+.++..++. ..+...++.+|.++|..+++
T Consensus 689 NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfi-D~LTNwYiR~nRrrlkGe~G-~~d~~~AL~~Lf~vL~t~~r 766 (1070)
T KOG0434|consen 689 NVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFI-DELTNWYIRFNRRRLKGENG-EHDCHNALNVLFEVLFTLVR 766 (1070)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHH-HHhhhhheehhhhhhcCCCc-hHHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999 99999999999998876543 45666788999999999999
Q ss_pred HhccccCccHHHHHhhCCCCCC-----CCccccccccccccccc
Q psy17125 1000 TVAPIMPHLAEEVYSHLPSRQG-----TFSSFCHFKVYLQYSGS 1038 (1281)
Q Consensus 1000 lLaP~~P~laeel~~~L~~~~~-----~~~s~~~~~~~p~~~~~ 1038 (1281)
+|+||+||++|.+||+|..... ....++|+..||.+++.
T Consensus 767 ~MaPfTPF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~ 810 (1070)
T KOG0434|consen 767 VMAPFTPFFTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEE 810 (1070)
T ss_pred HHcCCchHHHHHHHHHHHhcCCccccCCccceeEEeecCCchhh
Confidence 9999999999999999964322 23456888899987754
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-106 Score=985.89 Aligned_cols=704 Identities=25% Similarity=0.391 Sum_probs=544.6
Q ss_pred hhHH-HHHHHHcC----------CC-CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchH
Q psy17125 5 SELY-SWQREALN----------GK-PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI 72 (1281)
Q Consensus 5 ~~~~-~~~~~~~~----------~~-~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pi 72 (1281)
.+|. +||+.+.. ++ +|||+++|+|||||.|||||+|||+++||++||+||+||||++|||||++|+|+
T Consensus 8 ~~IE~KWQ~~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPa 87 (814)
T COG0495 8 REIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPA 87 (814)
T ss_pred HHHHHHHHHHHHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchH
Confidence 4677 99998852 23 599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcc
Q psy17125 73 ELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKP 152 (1281)
Q Consensus 73 e~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~ 152 (1281)
|..|++.+ .+| +.|++++++.+++||++||+++||+| .+.|+||+|++++||+|.+|+++||||+++.+
T Consensus 88 e~~A~~~~---~~P-------~~wt~~ni~~~k~qlk~lG~siDW~R-ef~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~ 156 (814)
T COG0495 88 ENAAIKIG---TDP-------AKWTYYNIAYMKKQLKSLGFSIDWRR-EFATCDPEYYKWIQWQFLKLYEKGLAYRKEAP 156 (814)
T ss_pred HHHHHHhC---CCh-------HHHHHHHHHHHHHHHHHhCCcccccc-ceecCCccHHHHHHHHHHHHHHCCCEEecccc
Confidence 99999997 688 88999999999999999999999997 99999999999999999999999999999999
Q ss_pred eeecCCccccccccccccCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecC
Q psy17125 153 VYWSPSSRTALAESELEYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG 232 (1281)
Q Consensus 153 v~w~p~~~t~lad~ev~~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~ 232 (1281)
|+|||.|+|+|+|+||..
T Consensus 157 VnwcP~d~tvlaneqv~~-------------------------------------------------------------- 174 (814)
T COG0495 157 VNWCPVDGTVLANEQVID-------------------------------------------------------------- 174 (814)
T ss_pred ceeCCCcCCccccceeec--------------------------------------------------------------
Confidence 999999999999999851
Q ss_pred ceEEeehhhHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHH
Q psy17125 233 ANVIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLAL 312 (1281)
Q Consensus 233 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~ 312 (1281)
T Consensus 175 -------------------------------------------------------------------------------- 174 (814)
T COG0495 175 -------------------------------------------------------------------------------- 174 (814)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCCCcceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCc
Q psy17125 313 AEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERI 392 (1281)
Q Consensus 313 ~~~l~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~ 392 (1281)
+.|||||++|+++.+.|||++|++|
T Consensus 175 -------------------------------------------------------g~~~r~~~~V~~kel~qw~~kit~y 199 (814)
T COG0495 175 -------------------------------------------------------GGCWRCGEPVEIKELTQWFFKITDY 199 (814)
T ss_pred -------------------------------------------------------CCcccCCCceeEeeeEEEEEEechh
Confidence 2389999999999999999999999
Q ss_pred hhhhh-------------hhhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeE
Q psy17125 393 KPEAL-------------VCKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHAL 459 (1281)
Q Consensus 393 ~~e~~-------------~~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~ 459 (1281)
+++++ +..||+||||++.. ++|.|. +.+. .....+.
T Consensus 200 ae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g-----------~~v~f~-------------~~~~-------~~~~~~~ 248 (814)
T COG0495 200 ADELLDDLDKLATLWPETVKGMQRNWIGPSEG-----------YEVAFV-------------VDGE-------EEIVSIE 248 (814)
T ss_pred HHHHHhhhhhhccCCchhHHHHHHcCcCCCCC-----------eEEEEe-------------cCCc-------ccceeee
Confidence 86543 45899999999743 234443 1100 0146789
Q ss_pred EeeccccCCCcccccccCCccccceecccCceEEeehhhHHh-HHhhccC-Cee---EeccccccccCCcccccCCCccC
Q psy17125 460 IWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVEN-LKWTFQT-DID---VVCDFPGQYLQDITYIHPINKEQ 534 (1281)
Q Consensus 460 v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~-~~~~~~~-~~~---~~~~~~G~~L~g~~~~hPl~~~~ 534 (1281)
||||||+|++|++++++.|+|+.+...+.+..- ..+.+ +....+. ... ...+.+|..+ |.++.||+++..
T Consensus 249 vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~----~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~-g~~a~~p~~~e~ 323 (814)
T COG0495 249 VFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQT----PLVAEFVDECKGTGVVESVPAHAEKDGVFL-GGYAINPVNGEK 323 (814)
T ss_pred eeeccCccccCeEEEEEeCCchHHHHHhcCccc----hhHHHHHHHhcCCCceeeeeccCCCcceec-cccccCCCCCCc
Confidence 999999999999999999999987655543321 22222 2222221 111 1234667754 688999999954
Q ss_pred cceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhccc-
Q psy17125 535 RDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPD- 613 (1281)
Q Consensus 535 ~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~- 613 (1281)
+||+.++||.+.+|||+||.+|||+.+||++|++|++|+..+|...+. .|..+.+ ++.+ |...
T Consensus 324 --iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~---------~~~~~~~--~~g~---linS~ 387 (814)
T COG0495 324 --IPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGT---------VGKKVYE--GEGV---LINSG 387 (814)
T ss_pred --CCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCC---------cccceec--cCce---Eeccc
Confidence 999999999999999999999999999999999999999999977653 1222221 1110 1110
Q ss_pred cccccccccccCcccCCCCceEEccccccccChhhHHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccccccCCCccc
Q psy17125 614 VLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPI 693 (1281)
Q Consensus 614 ~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pI 693 (1281)
.+.--.++ +.+...||+ ++-+...|||+++. ++||.+||||+||.||
T Consensus 388 ~~~gl~~e-~a~~~~~~~--l~~~~~~q~~v~Y~------------------------------lrdW~~srqRywg~pi 434 (814)
T COG0495 388 GLDGLDYE-EAKVKIRCG--LVKRGLGQWFVNYR------------------------------LRDWLKSRQRYWGEPI 434 (814)
T ss_pred cccCcchh-HHHHHHHHh--HHHhcCCceEEecc------------------------------cchHHHHHHHHhCCCc
Confidence 00000011 112222343 33344455555442 5789999999999999
Q ss_pred eeEec--CCeEEechhhHHHHHhhh-hhcCC--CCccCcCccccccccccccccccccccccccccCCcchhhhc-----
Q psy17125 694 PVFYD--GDTIIVNEANIKHFCTLI-DEHGP--DFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVL----- 763 (1281)
Q Consensus 694 P~~~~--~~~i~v~~~~~~~i~~~~-~~~g~--d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l----- 763 (1281)
|+++| ++.+.++.+.++..+... ...|. ...| .++|...++......++++|||+|++|+ |+++.
T Consensus 435 pii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~---~~~W~~~s~~~s~~~ret~Tm~~~~~ss--wy~~r~~d~~ 509 (814)
T COG0495 435 PIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPW---DEEWVIESLPDSTAYRETDTMDTFIDSS--WYYLRFFDPI 509 (814)
T ss_pred ceeEcccCCcccCchHhcCcccccccccCCCCCCCCC---CcceEEEecCCCceeeehhhhhHhcccc--cccHhhcChh
Confidence 99999 666777777665544321 22232 3333 3456666666688899999999999985 55432
Q ss_pred --cC-----------CCccceeeccceeeehhhHHHHHHHHhc------CCCCCceEEeeceeeccCCCcccccCCCccC
Q psy17125 764 --KD-----------KPAHVYMEGMDQINGWFMSSLLTSVALK------HTAPFRNVFLHGFVVDEKGAKMSKSVGNVIS 824 (1281)
Q Consensus 764 --~~-----------~p~dl~~~G~Dii~~wf~~~l~~~~~l~------~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~ 824 (1281)
++ +|+|+|++|+||+..|+.+..+.+.++. ..+||++|+++|||+..+|+|||||+||+|+
T Consensus 510 ~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~ 589 (814)
T COG0495 510 FLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVD 589 (814)
T ss_pred cCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCC
Confidence 11 7999999999999999999988888875 3578999999999994489999999999999
Q ss_pred hhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHH
Q psy17125 825 AHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYL 904 (1281)
Q Consensus 825 p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~ 904 (1281)
|+++++ +||||++|+|+++.++..+|.+|+++.++++.++++|+|+++...
T Consensus 590 p~~~i~-----------------------------~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~ 640 (814)
T COG0495 590 PEEAVE-----------------------------KYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEH 640 (814)
T ss_pred HHHHHH-----------------------------HhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHh
Confidence 999999 999999999999999999999999999999999999999998877
Q ss_pred HHhhcCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHH
Q psy17125 905 LGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGE-FQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEAR 983 (1281)
Q Consensus 905 ~~~l~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~-~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r 983 (1281)
.+...... .......++| .++++++.+++.++. +.|+.++..+|.|+ |.+. .|...... .+
T Consensus 641 ~~~~~~~~---~~~~~~~~~~---~~h~~~~~v~~~~e~~~~~nt~i~~~m~l~-N~l~-~~~~~~~~----------~~ 702 (814)
T COG0495 641 LEKLVEEL---TKEQGKEDRW---LLHRTIKKVTEDFEARQTFNTAIAALMELL-NALR-KYLRRTEG----------DR 702 (814)
T ss_pred hhcccccc---cchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHhcccc----------hH
Confidence 64321110 1111144555 455566777777777 89999999999999 7664 45433221 01
Q ss_pred HHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCCCCccccccccccccccc--hhheeeeecccccccccccceee
Q psy17125 984 LSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYLQYSGS--IAKRILYCDSINGEARLSGLHTL 1061 (1281)
Q Consensus 984 ~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~p~~~~~--i~kd~~y~~~vngk~R~s~q~~l 1061 (1281)
.++.++++.+++||+||+||+|||+|+.|+.. ++++.+.||+++++ ..+.+...+|+||+.|..-....
T Consensus 703 ----~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~-----~~v~~~~wP~~de~~l~~~~~~~~vqvngk~r~~~~~~~ 773 (814)
T COG0495 703 ----KVLREALETWVRLLAPFAPHIAEELWEELGNE-----GFVSNAPWPEPDEEALVEDEVEIVVQVNGKVRAREVVAA 773 (814)
T ss_pred ----HHHHHHHHHHHHHhcccccHHHHHHHHHhcCC-----CceeeCCCCCCChhhccccceEEEEEEeeEEEEEEEEcC
Confidence 46788999999999999999999999999752 25667789999875 34457899999999887655443
Q ss_pred e
Q psy17125 1062 H 1062 (1281)
Q Consensus 1062 ~ 1062 (1281)
.
T Consensus 774 ~ 774 (814)
T COG0495 774 D 774 (814)
T ss_pred C
Confidence 3
No 28
>KOG0435|consensus
Probab=100.00 E-value=2.1e-102 Score=891.30 Aligned_cols=678 Identities=24% Similarity=0.350 Sum_probs=519.8
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHH
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKN 95 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~ 95 (1281)
++++| ||++|||||+|.|||||+|.|++.|+++||+||+||+|++|||||.+|+|+|++|.+.+ ++| +.
T Consensus 55 ~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAierg---v~P-------~s 123 (876)
T KOG0435|consen 55 KSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERG---VHP-------AS 123 (876)
T ss_pred cCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcC---CCc-------hh
Confidence 35677 89999999999999999999999999999999999999999999999999999999997 899 89
Q ss_pred HHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCCCCc
Q psy17125 96 FALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHV 175 (1281)
Q Consensus 96 ~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~~~~ 175 (1281)
|+.++|+.|++||++||++|||+| +..|++|+|++++||+|.+|+++||+|+....|+|||.++|+||++||+..
T Consensus 124 WT~~NI~~Mk~Ql~~lg~~FDWdr-EiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~---- 198 (876)
T KOG0435|consen 124 WTINNIAKMKQQLKSLGISFDWDR-EISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDAD---- 198 (876)
T ss_pred hhHHHHHHHHHHHHHcCccccccc-ccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhccc----
Confidence 999999999999999999999997 999999999999999999999999999999999999999999999998611
Q ss_pred CccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCceE
Q psy17125 176 SKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIEV 255 (1281)
Q Consensus 176 ~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 255 (1281)
T Consensus 199 -------------------------------------------------------------------------------- 198 (876)
T KOG0435|consen 199 -------------------------------------------------------------------------------- 198 (876)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCCCC
Q psy17125 256 VCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPG 335 (1281)
Q Consensus 256 ~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~~~ 335 (1281)
T Consensus 199 -------------------------------------------------------------------------------- 198 (876)
T KOG0435|consen 199 -------------------------------------------------------------------------------- 198 (876)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhh-----------hhhhhcc
Q psy17125 336 LEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL-----------VCKTVGN 404 (1281)
Q Consensus 336 ~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~-----------~~~~~~~ 404 (1281)
|.+||+|++||+|.|+||||+|+.|+..++ ++.||+|
T Consensus 199 --------------------------------G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrn 246 (876)
T KOG0435|consen 199 --------------------------------GCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRN 246 (876)
T ss_pred --------------------------------CccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHh
Confidence 236999999999999999999999996543 4689999
Q ss_pred cccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccce
Q psy17125 405 ILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSV 484 (1281)
Q Consensus 405 ~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~ 484 (1281)
|||++.+ +|+.|. +.+ .+..|..+.||||||+||+|.+|+++.|+|..+.
T Consensus 247 WIG~~~G-----------~el~F~-------------ll~------~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~ 296 (876)
T KOG0435|consen 247 WIGRCDG-----------AELMFP-------------LLD------DGSNDEILTVYTTRPETLFGASFLVLAPSHSLLD 296 (876)
T ss_pred hcccccc-----------eEEEEE-------------ecc------CCCCCceEEEEecCchhhccceEEEEcCCchhhh
Confidence 9999854 344332 221 2334788999999999999999999999999765
Q ss_pred ecccCceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhH
Q psy17125 485 ASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDD 564 (1281)
Q Consensus 485 ~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~D 564 (1281)
... ++.+-+. ... .. . +|.. .+..+.||+++.. +||+.++||..-+|||+||++|+|+.+|
T Consensus 297 ~~~---------~lkefl~-~~~--l~---~-Kg~~-lp~~A~Np~tg~~--iPv~~a~~v~~~~gt~a~m~~P~hd~rD 357 (876)
T KOG0435|consen 297 KDS---------SLKEFLS-KSD--LP---Q-KGVQ-LPCQAKNPVTGRA--IPVVVADYVLDPYGTGAVMGAPGHDQRD 357 (876)
T ss_pred hhc---------hHHHhhh-hhh--cc---c-cCcc-cceeeccCCCCce--eeEEEechhccCCCcceeeeccCcccch
Confidence 443 1222111 111 00 1 3443 4588999999976 9999999999999999999999999999
Q ss_pred HHHHHHcCCCeeccc----CCCCccCCCCCCCCCCceeccccchhHHhhhccccccccccccccCcccCCCCceEEcccc
Q psy17125 565 FLLALAEKIPVLNLI----TNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQ 640 (1281)
Q Consensus 565 y~~~~~~~lpi~~vi----d~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~ 640 (1281)
++++++-++..+.++ +++|+.+... .+.|+...
T Consensus 358 ~ela~~~~~~~~~~~~~~f~~~~K~~~~~--~~tn~~~~----------------------------------------- 394 (876)
T KOG0435|consen 358 KELAQKIGIKWIICIEVIFTNFGKKNEQK--AFTNLDIR----------------------------------------- 394 (876)
T ss_pred hHHHhcccceeEEEEeeeecchhhhhccc--cccchhHH-----------------------------------------
Confidence 999999555444333 2222211100 01110000
Q ss_pred ccccChhhHHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec--CCeEEechhhHHHHHhhhhh
Q psy17125 641 QWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD--GDTIIVNEANIKHFCTLIDE 718 (1281)
Q Consensus 641 qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~--~~~i~v~~~~~~~i~~~~~~ 718 (1281)
...+..+.++.++.+........ .++||.|||||+||+|||+++| |+.+.|+++.++..++.++.
T Consensus 395 ------q~a~~~l~~~~~~~g~g~~~vs~-------kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~ 461 (876)
T KOG0435|consen 395 ------QNAALKLFQFAERKGVGGYVVSY-------KLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELND 461 (876)
T ss_pred ------HHHHHHHHHHHHhcCCCcceecc-------hhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccc
Confidence 01233445555443322111111 2568999999999999999999 88999998877766554432
Q ss_pred cCCCCccCcCccccccccc--cccccccccccccccccCCcchhhhcc--C---------------CCccceeeccceee
Q psy17125 719 HGPDFWWSLSVEQLLNTSD--VNSNVTKSNDILDIWFDSGISWSHVLK--D---------------KPAHVYMEGMDQIN 779 (1281)
Q Consensus 719 ~g~d~~~~~~~~~l~~~~~--~~~~~~~~~dvlD~WFdS~l~w~~~l~--~---------------~p~dl~~~G~Dii~ 779 (1281)
.-+....-..++++....| |+....|++|+||||+|| +||+++. . .|+|+|++|++|..
T Consensus 462 ~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDS--sWYYlRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAv 539 (876)
T KOG0435|consen 462 FTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDS--SWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAV 539 (876)
T ss_pred cCCCCCcccchhhheeccCccCCCcccccccccchhhcc--ceeeEeecCCCCcccccchhhhhccCceeEEeccHHHHH
Confidence 2222122233555655554 778899999999999998 5666541 1 79999999999999
Q ss_pred ehhhHH-----HHHHHH-hcCCCCCceEEeeceeecc------CC-------------------------------Cccc
Q psy17125 780 GWFMSS-----LLTSVA-LKHTAPFRNVFLHGFVVDE------KG-------------------------------AKMS 816 (1281)
Q Consensus 780 ~wf~~~-----l~~~~~-l~~~~Pf~~v~~hG~vld~------~G-------------------------------~KMS 816 (1281)
.|+.+. ++.... ....+||++++.+|+|+.. .| +|||
T Consensus 540 lHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMS 619 (876)
T KOG0435|consen 540 LHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMS 619 (876)
T ss_pred HHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhh
Confidence 884433 233332 3467999999999999731 11 5999
Q ss_pred ccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHH
Q psy17125 817 KSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQK 896 (1281)
Q Consensus 817 KS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~k 896 (1281)
||++|+|+|.+++. +||+|++|+|+++++++..+++|+++.+.+..+++.|
T Consensus 620 KSK~NGVdP~~~v~-----------------------------~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~r 670 (876)
T KOG0435|consen 620 KSKHNGVDPADVVL-----------------------------EYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQR 670 (876)
T ss_pred hcccCCCCHHHHHH-----------------------------HhCchHHHHHHHhhCCcccccccccccchhHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC--CCCCC--CCcCcHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHhhhhHHHHhhcc
Q psy17125 897 IRSSLRYLLGVLHN--HSEST--GSISRYVDVYMLKRLCEFQNTMDTLYG-EFQYARASRVLLNFVVNELSAFYFTLVKD 971 (1281)
Q Consensus 897 l~n~~r~~~~~l~~--~~~~~--~~~~~~~d~~il~~l~~~~~~v~~~~e-~~~~~~ai~~i~~f~~~~l~~~Yle~~k~ 971 (1281)
+|++...++..-.+ ....+ .......++.+.+..+.++++++++|+ .+.++.|+..+|.|. |.|...+-..
T Consensus 671 iw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~lt-N~l~~a~k~~--- 746 (876)
T KOG0435|consen 671 IWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLT-NALKKALKIV--- 746 (876)
T ss_pred HHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhh---
Confidence 99999888764221 11111 122344566789999999999999999 577999999999999 7776643110
Q ss_pred cccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCCCCccccccccccccccchhhee-eeecccc
Q psy17125 972 RLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYLQYSGSIAKRI-LYCDSIN 1050 (1281)
Q Consensus 972 ~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~p~~~~~i~kd~-~y~~~vn 1050 (1281)
+. . ......++..+++||+|++||+|+|+|..|+... ++.+ ...||..+.+...+. .+.+++|
T Consensus 747 -~~-h----------~~~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~~-~~~~---~~~WP~vd~~~~~~~~~~~v~IN 810 (876)
T KOG0435|consen 747 -LV-H----------SPEFERALEALVIMLAPFAPHVASELWSALANDL-SWVS---DVKWPEVDPDYLIEFEVLPVQIN 810 (876)
T ss_pred -hh-c----------ChHHHHHHHHHHHHHhccCchhHHHHHHHHhccc-cchh---ccCCccCChhhhcccceeeEEEc
Confidence 00 0 0124567889999999999999999999997432 2222 225898887644333 5889999
Q ss_pred ccccccc
Q psy17125 1051 GEARLSG 1057 (1281)
Q Consensus 1051 gk~R~s~ 1057 (1281)
|+.|...
T Consensus 811 Gk~~g~i 817 (876)
T KOG0435|consen 811 GKVRGKI 817 (876)
T ss_pred CEeccee
Confidence 9988643
No 29
>KOG0437|consensus
Probab=100.00 E-value=1.1e-83 Score=739.95 Aligned_cols=753 Identities=19% Similarity=0.259 Sum_probs=565.3
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcc------c-------
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD------K------- 82 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~------~------- 82 (1281)
++++||+++.|+||+||.||+||+++....|+..-|+||+|++|+||+||||+|+||...|.+... .
T Consensus 41 ~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~e 120 (1080)
T KOG0437|consen 41 KSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPEE 120 (1080)
T ss_pred cccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCchh
Confidence 458999999999999999999999999999999999999999999999999999999877766432 0
Q ss_pred --------------------------------------------CCCHHHHHH--HHHHHHHHHHHHHHHHHHHcCceec
Q psy17125 83 --------------------------------------------LLSPLDIRK--KAKNFALETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 83 --------------------------------------------~~~~~e~~~--~~~~~~~~~~~~~~~~l~~lgi~~D 116 (1281)
+++.+||.+ ....|...+--.-.+++++||..+|
T Consensus 121 ~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~iD 200 (1080)
T KOG0437|consen 121 EEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGID 200 (1080)
T ss_pred hhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCCcc
Confidence 112222211 1244445555556789999999999
Q ss_pred cCCCeeecCC--HHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCCC-CcCccEEEEEEeccCccccc
Q psy17125 117 WEHNCYHTFD--KEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPD-HVSKSIYLKIKLNQVPAHLL 193 (1281)
Q Consensus 117 W~R~~~~T~~--~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~~-~~~~~~~vkf~l~~~~~~~~ 193 (1281)
|+| .|.|+| |.|..+|.|+|.+|.+.|.|..|.+...|||.+++++.||+....+. +.+..+.||+++.+.....+
T Consensus 201 WRR-SFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~~p~~l 279 (1080)
T KOG0437|consen 201 WRR-SFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEPFPKAL 279 (1080)
T ss_pred eee-eeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccccccCCCCCcceEEEEEEEecccchhhc
Confidence 997 888875 89999999999999999999999999999999999999999975553 45667888888887654444
Q ss_pred cC--CCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecC--ceEEeehhhHHhhhhhcc----CCceEeecccCCccc
Q psy17125 194 EG--ATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG--ANVIVAKCLVESLKWTFQ----TDIEVVCDFPGQYLQ 265 (1281)
Q Consensus 194 ~~--~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~--~~~i~~~~~~~~~~~~~~----~~~~~~~~~~G~~l~ 265 (1281)
++ ..+++++++|.||+||+|+|+++|+|+.+|...+..+ +.+|+.++.++++..|-. ..+..+.+++|..++
T Consensus 280 ~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~i 359 (1080)
T KOG0437|consen 280 SSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLI 359 (1080)
T ss_pred cccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeehHHHhhcchhhccccCCcccceeeecchhhc
Confidence 33 3468999999999999999999999999999999874 689999999998877654 348889999999999
Q ss_pred ccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCCCCCCCccccCCC
Q psy17125 266 DITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDG 345 (1281)
Q Consensus 266 ~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~gl~~~~~~ 345 (1281)
|..+..|++.. ..|.+||+..|..+.|||+|.|||+++||||.......-. |.|=|+
T Consensus 360 Ga~l~aPlsv~-~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK----------------~~lYg~------ 416 (1080)
T KOG0437|consen 360 GAPLSAPLSVY-ERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKK----------------PELYGL------ 416 (1080)
T ss_pred CCcccCcchhh-heeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhc----------------ccccCC------
Confidence 99999999875 6789999999999999999999999999999864322100 000000
Q ss_pred cccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccccCCcccccccccc
Q psy17125 346 KDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHDRPGTALAESEL 425 (1281)
Q Consensus 346 ~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~~~~t~laeaei 425 (1281)
.+.|..
T Consensus 417 ------------------------------------~~ew~~-------------------------------------- 422 (1080)
T KOG0437|consen 417 ------------------------------------KPEWVL-------------------------------------- 422 (1080)
T ss_pred ------------------------------------Chhhcc--------------------------------------
Confidence 011210
Q ss_pred cccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEeehhhHHhHHhh
Q psy17125 426 EYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKWT 505 (1281)
Q Consensus 426 ey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~ 505 (1281)
|.+ +++ +++.+---..|+...++++.+
T Consensus 423 -~E~----------vPi------------------------------------------i~~~~fGdl~ae~vc~~lKiq 449 (1080)
T KOG0437|consen 423 -FEI----------VPI------------------------------------------IRIPGFGDLAAEVVCDELKIQ 449 (1080)
T ss_pred -ccc----------cce------------------------------------------eeccccchhhHHHHHHHHhcc
Confidence 000 000 000000001112222233333
Q ss_pred ccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCeecccCCCCcc
Q psy17125 506 FQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKY 585 (1281)
Q Consensus 506 ~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid~~G~~ 585 (1281)
...+.+.+.+.+-. .|.--++ +|.|
T Consensus 450 s~~dk~klaeaK~~-----~y~e~fy--------------------------------------------------~g~m 474 (1080)
T KOG0437|consen 450 SPNDKKKLAEAKKL-----AYLEGFY--------------------------------------------------EGTM 474 (1080)
T ss_pred CchhHHHHHHhhHH-----HHHHhhh--------------------------------------------------cceE
Confidence 22222222221100 0000000 1111
Q ss_pred CCCCCCCCCCceeccccchhHHhhhccccccccccccccCcccCCCCceEEccccccccChh--hHHHHHHHhhhccccc
Q psy17125 586 SPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTE--RIKPEALACLEEVNFV 663 (1281)
Q Consensus 586 ~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~--~~~~~~~e~~~~~~~~ 663 (1281)
.- ..|.|.+| +++++.|...|.+...+....+...++.+|||..|++.+++|||+++. +|+.++.+++++++.+
T Consensus 475 li---g~y~G~KV-e~~K~~i~~~li~~g~a~~y~EPEkqVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe~l~~f 550 (1080)
T KOG0437|consen 475 LI---GKYKGEKV-EDAKPKIKTDLIETGDALKYNEPEKQVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECLENLNTF 550 (1080)
T ss_pred EE---eccccccH-HhhhhHHHHHHHhcccceeecCcchhhhccCCCceEEEeccchhhhcCcHHHHHHHHHHHhhhhcc
Confidence 10 24778888 578888999898877777777888889999999999999999999995 7999999999999888
Q ss_pred chhHHHHHHHHHHcCCCcccccccCCCcccee----Eec---CCeEEechhhHHHHHhhhhhcCCC-CccCcCccccccc
Q psy17125 664 PESAKKTLRDQIAQRPYWCISRQRVWGVPIPV----FYD---GDTIIVNEANIKHFCTLIDEHGPD-FWWSLSVEQLLNT 735 (1281)
Q Consensus 664 P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~----~~~---~~~i~v~~~~~~~i~~~~~~~g~d-~~~~~~~~~l~~~ 735 (1281)
.+.+|+.++..|+|+..|.+||..+.|++||| +++ |+++||++++++|++.. +..|.. ...+.++++++++
T Consensus 551 ~dEtR~~fE~tLdWL~~wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~-d~~g~~~~plgi~~~QMtde 629 (1080)
T KOG0437|consen 551 SDETRNGFEDTLDWLGQWACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHR-DLYGKVEGPLGIKPDQMTDE 629 (1080)
T ss_pred CHHHHHHHHHHHHHHHhhhhhccccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHH-hhccCCcccCCCChhhcCHH
Confidence 88899999999999999999999999999998 333 89999999999999875 444543 2345566666654
Q ss_pred cccccccccccccccccccCCcchhhhc----cC----CCccceeeccceeeehhhHHHHHHHHhc--CCCCCceEEeec
Q psy17125 736 SDVNSNVTKSNDILDIWFDSGISWSHVL----KD----KPAHVYMEGMDQINGWFMSSLLTSVALK--HTAPFRNVFLHG 805 (1281)
Q Consensus 736 ~~~~~~~~~~~dvlD~WFdS~l~w~~~l----~~----~p~dl~~~G~Dii~~wf~~~l~~~~~l~--~~~Pf~~v~~hG 805 (1281)
.+....+.+. ..- ++.+. ...+ .+ ||.|++++|+|++.+|+.+.++.|+++. .++| +.|.++|
T Consensus 630 VwdYvF~~~~-~~k----~t~i~-~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WP-kgiraNG 702 (1080)
T KOG0437|consen 630 VWDYVFLNEP-YPK----NTAIP-EEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWP-KGIRANG 702 (1080)
T ss_pred HHHHhhccCC-CCc----CCCcc-HHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCc-cceeeCc
Confidence 4321111110 000 00110 1111 11 8999999999999999999999999986 4578 9999999
Q ss_pred eeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcc
Q psy17125 806 FVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKN 885 (1281)
Q Consensus 806 ~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~ 885 (1281)
|++ .+++|||||.||+.+..+.++ +||||+.|+.|+.++....|.||.+.
T Consensus 703 HLm-LNsEKMSKSTGNfmTL~qaie-----------------------------KFgad~tRlalAdaGD~veDANF~ea 752 (1080)
T KOG0437|consen 703 HLM-LNSEKMSKSTGNFMTLEQAIE-----------------------------KFGADGTRLALADAGDGVEDANFVEA 752 (1080)
T ss_pred eEE-ecchhhccccCCeeeHHHHHH-----------------------------HhCccceeeeeecccCCcccchhHHh
Confidence 998 899999999999999999999 99999999999999999999999876
Q ss_pred hhccchHHHHHHHHHHHHHHHhhcCCCCC-CCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhH
Q psy17125 886 ILNSSQDDVQKIRSSLRYLLGVLHNHSES-TGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAF 964 (1281)
Q Consensus 886 ~l~~~~~~~~kl~n~~r~~~~~l~~~~~~-~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~ 964 (1281)
. +...+-||.+.+.++...+.+...- ++....+.|+.+.+.++.+++...++|+...|+.|++.-+--+ ....+.
T Consensus 753 ~---AnAaILRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~-qaArD~ 828 (1080)
T KOG0437|consen 753 N---ANAAILRLYTYVEWIEEMCENRSSLRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDL-QAARDM 828 (1080)
T ss_pred c---ccHHHHHHHHHHHHHHHHHhhHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHH-HHHHHH
Confidence 5 4557889999998888776644322 2334458999999999999999999999999999998754444 356777
Q ss_pred HHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCCCCcccccccccccccc
Q psy17125 965 YFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYLQYSG 1037 (1281)
Q Consensus 965 Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~p~~~~ 1037 (1281)
|-+.+-. .+ ...+++..+++...||+||+||+||.+|+.+..... +++. .||..++
T Consensus 829 Yrel~g~-----~m-------h~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~~~----~v~~-~wP~~s~ 884 (1080)
T KOG0437|consen 829 YRELCGE-----GM-------HRDLVFRFIETQTLLLAPICPHLAEYIWRTVLKKNF----SVNV-GWPFVSP 884 (1080)
T ss_pred HHHHhcc-----cc-------cHHHHHHHHHHHHHHHhccchHHHHHHHHHhccCCc----eeec-CCCCCCC
Confidence 7655431 11 123577889999999999999999999999876542 2222 5676553
No 30
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.2e-74 Score=717.24 Aligned_cols=329 Identities=16% Similarity=0.228 Sum_probs=265.8
Q ss_pred CcccCCCCceEEccccccccChhhHHHHHHHhhhcccccchhHHHHHHHHHH-cCCCcccccccCCCccceeEec--CCe
Q psy17125 625 PYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIA-QRPYWCISRQRVWGVPIPVFYD--GDT 701 (1281)
Q Consensus 625 p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l~-~l~DW~ISRqr~WG~pIP~~~~--~~~ 701 (1281)
|+|+|||++++++.++||||++++++++++++++++.++|+..++++.+||+ +++|||||||++||+||| |.+ +++
T Consensus 172 p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP-~~~~~~~~ 250 (556)
T PRK12268 172 PRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP-WPGFEGKV 250 (556)
T ss_pred CccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC-CCCCCCcE
Confidence 7899999999999999999999999999999999888999999999999999 799999999999999999 555 678
Q ss_pred EEechhhHHHHHhhhhhcCCCCccCcCcccccccccccccccccccccc-ccccCCcchhhhccCCCccceeeccceeee
Q psy17125 702 IIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILD-IWFDSGISWSHVLKDKPAHVYMEGMDQING 780 (1281)
Q Consensus 702 i~v~~~~~~~i~~~~~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD-~WFdS~l~w~~~l~~~p~dl~~~G~Dii~~ 780 (1281)
+|||++.+......... +... ..+++.++ .|+||+ |.++++.|+|+++|
T Consensus 251 iyvW~da~~~y~~~~~~-------------~~~~-------~g~~~~~~~~w~ds~----------~~~~~~~G~D~~~F 300 (556)
T PRK12268 251 FYVWFDAVIGYISASKE-------------WAER-------TGDPEAWKEFWLDPE----------TKSYYFIGKDNIPF 300 (556)
T ss_pred EEEeehHhhHHHHHHHH-------------HHHh-------cCCchHHHHHhCCCC----------CeEEEEEeeccCcc
Confidence 99998865433221110 0000 00123343 555653 56899999999998
Q ss_pred hh--hHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCC
Q psy17125 781 WF--MSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKL 858 (1281)
Q Consensus 781 wf--~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i 858 (1281)
|. +..++++.....++| +.+++|||++ .+|+|||||+||+|+|.++++
T Consensus 301 h~~~~p~~l~~~~~~~~~P-~~v~~~G~v~-~~G~KMSKS~GN~I~p~dli~---------------------------- 350 (556)
T PRK12268 301 HSIIWPAMLLGSGEPLKLP-DEIVSSEYLT-LEGGKFSKSRGWGIWVDDALE---------------------------- 350 (556)
T ss_pred hHHHHHHHHHhcCCCCCCC-CEeeccCCEE-ECCeeeccCCCcccCHHHHHH----------------------------
Confidence 84 445544433324566 7999999998 589999999999999999999
Q ss_pred CCCchhHHHHHHHhcCCCCCccccCcchhcc--chHHHHHHHHHHHHHHHhhcCCCCCC--CCcCcHHHHHHHHHHHHHH
Q psy17125 859 PAYGVDVLRWWVAAHASKDPTVPIGKNILNS--SQDDVQKIRSSLRYLLGVLHNHSEST--GSISRYVDVYMLKRLCEFQ 934 (1281)
Q Consensus 859 ~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~--~~~~~~kl~n~~r~~~~~l~~~~~~~--~~~~~~~d~~il~~l~~~~ 934 (1281)
+||+|++|||+++.++..+|++|+.+.+.. ..+++++++|.++++...+.+..... .......|+|+++++++++
T Consensus 351 -~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~ 429 (556)
T PRK12268 351 -RYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFGGIVPPGELGDEDRELIAEAEALF 429 (556)
T ss_pred -HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHHHHhcCCcCCCCcCCcccHHHHHHHHHHH
Confidence 999999999999999889999999988754 45688999999877765543221111 1234677999999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHh
Q psy17125 935 NTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYS 1014 (1281)
Q Consensus 935 ~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~ 1014 (1281)
+.+.++|++|+|+.|++.+++|+ +++|+|++..|+|...+. +...+..++.++.++++.+++||+|||||+||++|+
T Consensus 430 ~~v~~~~~~~~~~~a~~~l~~~~--~~~n~yi~~~kpw~~~~~-~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~ 506 (556)
T PRK12268 430 KEVGELLEAGEFKKALEEIMELA--REANKYLDEKAPWKLAKT-DRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWE 506 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHcCCChhhhcC-CHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99999999999999999999999 589999999999875542 333445567788889999999999999999999999
Q ss_pred hCCC
Q psy17125 1015 HLPS 1018 (1281)
Q Consensus 1015 ~L~~ 1018 (1281)
+|+.
T Consensus 507 ~Lg~ 510 (556)
T PRK12268 507 MLGG 510 (556)
T ss_pred HhCC
Confidence 9975
No 31
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=1.8e-72 Score=707.88 Aligned_cols=495 Identities=17% Similarity=0.252 Sum_probs=397.8
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhh-HHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHH
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVN-KILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAK 94 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~-~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~ 94 (1281)
+++++|+|+.|+|||||+|||||+++ ++.+|+++||+||+|++|+|++|+|+||+||+.+|++++ ++| +
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g---~~p-------~ 83 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEEN---CTP-------K 83 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcC---CCH-------H
Confidence 46778999999999999999999997 677999999999999999999999999999999999886 788 6
Q ss_pred HHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCCCC
Q psy17125 95 NFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDH 174 (1281)
Q Consensus 95 ~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~~~ 174 (1281)
++++++++.+++++++|||++| .+++|+++.|.+.|+++|.+|+++|+||++..+++|||.|+|+|+|.+|+..|
T Consensus 84 e~~d~~~~~~~~~~~~l~i~~D---~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~C-- 158 (801)
T PLN02610 84 EICDKYHAIHKEVYDWFDISFD---KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTC-- 158 (801)
T ss_pred HHHHHHHHHHHHHHHHcCCccc---cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcC--
Confidence 7799999999999999999998 79999999999999999999999999999999999999999999998876322
Q ss_pred cCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCce
Q psy17125 175 VSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIE 254 (1281)
Q Consensus 175 ~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 254 (1281)
T Consensus 159 -------------------------------------------------------------------------------- 158 (801)
T PLN02610 159 -------------------------------------------------------------------------------- 158 (801)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCC--CChhhHHHHHHcCCCcceeccCCCCcCCCC
Q psy17125 255 VVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPA--HGQDDFLLALAEKIPVLNLITNQGKYSPDA 332 (1281)
Q Consensus 255 ~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~--h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~ 332 (1281)
|. |+.+| ..|..|+.|
T Consensus 159 ----------------------------------------------P~~~C~~~~----------------a~Gd~Ce~C 176 (801)
T PLN02610 159 ----------------------------------------------PTEGCNYDS----------------ARGDQCEKC 176 (801)
T ss_pred ----------------------------------------------CccccCccc----------------cccchhhhc
Confidence 10 11110 012222222
Q ss_pred CCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccc
Q psy17125 333 GPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGIT 412 (1281)
Q Consensus 333 ~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~ 412 (1281)
|.
T Consensus 177 g~------------------------------------------------------------------------------ 178 (801)
T PLN02610 177 GK------------------------------------------------------------------------------ 178 (801)
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred cCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceE
Q psy17125 413 HDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANV 492 (1281)
Q Consensus 413 ~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~ 492 (1281)
T Consensus 179 -------------------------------------------------------------------------------- 178 (801)
T PLN02610 179 -------------------------------------------------------------------------------- 178 (801)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcC
Q psy17125 493 IVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEK 572 (1281)
Q Consensus 493 i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~ 572 (1281)
++.
T Consensus 179 ------------------------------------~~~----------------------------------------- 181 (801)
T PLN02610 179 ------------------------------------LLN----------------------------------------- 181 (801)
T ss_pred ------------------------------------cCC-----------------------------------------
Confidence 000
Q ss_pred CCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhccccccccccccccCcccCCCCceEEccccccccChhhHHHH
Q psy17125 573 IPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPE 652 (1281)
Q Consensus 573 lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~ 652 (1281)
..++..|.|.+||.+++.+.++||||++++++++
T Consensus 182 ----------------------------------------------p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~ 215 (801)
T PLN02610 182 ----------------------------------------------PTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDK 215 (801)
T ss_pred ----------------------------------------------hhhhcCCcccCCCCcceEEEcceEEEEhHHHHHH
Confidence 0112247788999999999999999999999999
Q ss_pred HHHhhhcccccch---hHHHHHHHHHHc-CCCcccccccCCCccceeE-ecCCeEEechhhHHHHHhhhhhcCCCCccCc
Q psy17125 653 ALACLEEVNFVPE---SAKKTLRDQIAQ-RPYWCISRQRVWGVPIPVF-YDGDTIIVNEANIKHFCTLIDEHGPDFWWSL 727 (1281)
Q Consensus 653 ~~e~~~~~~~~P~---~~r~~~~~~l~~-l~DW~ISRqr~WG~pIP~~-~~~~~i~v~~~~~~~i~~~~~~~g~d~~~~~ 727 (1281)
+.+++++..+.|+ +.+..+.+||+. ++||||||+..||+|+|.- +.++++|||++.+-..+....+.
T Consensus 216 L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~-------- 287 (801)
T PLN02610 216 LVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACY-------- 287 (801)
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhh--------
Confidence 9999986444443 344455689975 9999999999999999962 23678899887554333322110
Q ss_pred CccccccccccccccccccccccccccCCcchhhhccCCCcc---ceeeccceeeeh--hhHHHHHHHHhcCCCCCceEE
Q psy17125 728 SVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDKPAH---VYMEGMDQINGW--FMSSLLTSVALKHTAPFRNVF 802 (1281)
Q Consensus 728 ~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~~~p~d---l~~~G~Dii~~w--f~~~l~~~~~l~~~~Pf~~v~ 802 (1281)
.. + ...| |. -|.| +|+.|+||++|| +++.++++..+.-..| ++|+
T Consensus 288 ---------------~~--~-~~~~------W~-----~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p-~~i~ 337 (801)
T PLN02610 288 ---------------TP--E-WEKW------WK-----NPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTMM-KTIS 337 (801)
T ss_pred ---------------hh--H-HHHh------cC-----CcccceEEEEEeeecchhHHHHHHHHHHhCCCCcCCC-CEEE
Confidence 00 0 1112 21 1335 799999999999 6666666544322344 9999
Q ss_pred eeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCC-CchhHHHHHHHhcCCCCCccc
Q psy17125 803 LHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPA-YGVDVLRWWVAAHASKDPTVP 881 (1281)
Q Consensus 803 ~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~-yGaDalR~~l~~~~~~~~d~~ 881 (1281)
+|||++ .+|+|||||+||+|+|.++++ . ||+|++||||++.++..+|.+
T Consensus 338 ~~g~l~-~eG~KMSKS~GNvV~p~~~i~-----------------------------~~yg~D~lRyyLl~~~p~~~D~d 387 (801)
T PLN02610 338 VTEYLN-YEGGKFSKSKGVGVFGNDAKD-----------------------------TNIPVEVWRYYLLTNRPEVSDTL 387 (801)
T ss_pred eccCEe-cCCceecCcCCcccCHHHHHh-----------------------------ccCCchHhHHHhhhcCCCCCCCc
Confidence 999997 899999999999999999998 7 999999999999999999999
Q ss_pred cCcchhccc--hHHHHHHHHHHHHHHHhhc----CCCCCCCC-----cCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q psy17125 882 IGKNILNSS--QDDVQKIRSSLRYLLGVLH----NHSESTGS-----ISRYVDVYMLKRLCEFQNTMDTLYGEFQYARAS 950 (1281)
Q Consensus 882 f~~~~l~~~--~~~~~kl~n~~r~~~~~l~----~~~~~~~~-----~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai 950 (1281)
|+.+.+... .++++.++|+++|+++.+. ++..+..+ .....|++++++++++++++.++|++|+|+.|+
T Consensus 388 Fs~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al 467 (801)
T PLN02610 388 FTWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGL 467 (801)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999988774 3489999999999998776 33333211 134568999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCC
Q psy17125 951 RVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSR 1019 (1281)
Q Consensus 951 ~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~ 1019 (1281)
+.++++. +.+|+|++..+||...++ +..+...++.++.++++.+++||+||||++|+++|++|+..
T Consensus 468 ~~I~~l~--~~~NkYIe~~kPW~L~k~-d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~ 533 (801)
T PLN02610 468 KTAMSIS--SEGNAYLQESQFWKLYKE-DKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLP 533 (801)
T ss_pred HHHHHHH--HHHHHHHHhcCchhhhCC-CHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCC
Confidence 9999986 889999999999976543 33344567888899999999999999999999999999854
No 32
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=3.4e-72 Score=693.73 Aligned_cols=323 Identities=20% Similarity=0.282 Sum_probs=261.9
Q ss_pred ccCcccCCCCceEEccccccccChhhHHHHHHHhhhc---ccccchhHHHHHHHHHHc-CCCcccccccC-CCccceeEe
Q psy17125 623 SYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEE---VNFVPESAKKTLRDQIAQ-RPYWCISRQRV-WGVPIPVFY 697 (1281)
Q Consensus 623 ~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~---~~~~P~~~r~~~~~~l~~-l~DW~ISRqr~-WG~pIP~~~ 697 (1281)
..|+|+|||+|++++.++||||+++.+++++++++++ ....|+..++.+.+||++ ++|||||||++ ||+|||.+
T Consensus 165 ~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~- 243 (530)
T TIGR00398 165 INPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPND- 243 (530)
T ss_pred cCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCC-
Confidence 3589999999999999999999999999999999984 445688888999999998 99999999999 99999975
Q ss_pred cCCeEEechhhHHHHHhhhhhcCCCCccCcCccccccccccccccccccccccccccCCcchhhhccCCCcc-----cee
Q psy17125 698 DGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDKPAH-----VYM 772 (1281)
Q Consensus 698 ~~~~i~v~~~~~~~i~~~~~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~~~p~d-----l~~ 772 (1281)
+++++|||.+........+ +.. ...++-+..| ||.| +++
T Consensus 244 ~~~~~yvW~da~~~y~~~~---~~~--------------------~~~~~~~~~~-------------w~~~~~~~~v~~ 287 (530)
T TIGR00398 244 PNKVVYVWFDALIGYISSL---GIL--------------------SGDTEDWKKW-------------WNNDEDAELIHF 287 (530)
T ss_pred CCcEEEEeecchHHhHhhh---ccc--------------------cCChhhHHHh-------------CCCCCCceEEEE
Confidence 4567777766432111110 000 0000001111 5777 999
Q ss_pred eccceeeeh--hhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCccccccc
Q psy17125 773 EGMDQINGW--FMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHD 850 (1281)
Q Consensus 773 ~G~Dii~~w--f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~ 850 (1281)
.|+||+++| |++.++++.. ..||+++++|||+++ +|+|||||+||+|+|.++++
T Consensus 288 ~G~Di~~~h~~~~~a~l~~~~---~~~~~~~~~~g~v~~-~g~KmSKS~Gn~i~~~d~i~-------------------- 343 (530)
T TIGR00398 288 IGKDIVRFHTIYWPAMLMGLG---LPLPTQVFSHGYLTV-EGGKMSKSLGNVVDPSDLLA-------------------- 343 (530)
T ss_pred EecccchhHHHHHHHHHHhCC---CCCCCEEEeeccEEE-CCceecccCCceecHHHHHH--------------------
Confidence 999999998 4555555433 356799999999995 59999999999999999999
Q ss_pred ccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccc--hHHHHHHHHHHHHHHHhhcCCCCCC---CCcCcHHHHH
Q psy17125 851 ITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSS--QDDVQKIRSSLRYLLGVLHNHSEST---GSISRYVDVY 925 (1281)
Q Consensus 851 ~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~--~~~~~kl~n~~r~~~~~l~~~~~~~---~~~~~~~d~~ 925 (1281)
+||+|++|||+++.++...|++|+.+.+... .+++++++|+++++.+.+.+...+. .......|++
T Consensus 344 ---------~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~ 414 (530)
T TIGR00398 344 ---------RFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGVLPSEDITDEEDKK 414 (530)
T ss_pred ---------HcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccchhhHH
Confidence 9999999999999988899999999998775 5689999999988877655422111 1123567999
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17125 926 MLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIM 1005 (1281)
Q Consensus 926 il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~ 1005 (1281)
++++++++.+.+.++|++|+|+.|++.+++|+ +++|.|++..|+|.+.++ +.++.+++.++.++++.++++|+|||
T Consensus 415 ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~~~~~--~~~~~~~~~~l~~~l~~l~~ll~P~~ 490 (530)
T TIGR00398 415 LLKLINEALEQIDEAIESFEFRKALREIMKLA--DRGNKYIDENKPWELFKQ--SPRLKELLAVCSMLIRVLSILLYPIM 490 (530)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHhcCCChhhcCC--hHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999 689999999999887643 23566788999999999999999999
Q ss_pred CccHHHHHhhCCCC
Q psy17125 1006 PHLAEEVYSHLPSR 1019 (1281)
Q Consensus 1006 P~laeel~~~L~~~ 1019 (1281)
||+||++|+.|+..
T Consensus 491 P~~ae~i~~~L~~~ 504 (530)
T TIGR00398 491 PKLSEKILKFLNFE 504 (530)
T ss_pred cHHHHHHHHHhCCC
Confidence 99999999999753
No 33
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-71 Score=663.18 Aligned_cols=494 Identities=22% Similarity=0.309 Sum_probs=411.2
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHH
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNF 96 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~ 96 (1281)
..++|+|+.|+|||||+|||||+++++.+||++||+||+|++|+|+.|+|+||+||+.+|++++ ++| +++
T Consensus 3 ~~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g---~tP-------~el 72 (558)
T COG0143 3 MMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEG---ITP-------QEL 72 (558)
T ss_pred CCCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcC---CCH-------HHH
Confidence 4578999999999999999999999999999999999999999999999999999999999997 899 566
Q ss_pred HHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCCCCcC
Q psy17125 97 ALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVS 176 (1281)
Q Consensus 97 ~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~~~~~ 176 (1281)
|+++.+.++++++.|||++| .+.+|+++.|.+.++++|.+|+++|+||.+..+++||++|++.|+|.+|+..+.
T Consensus 73 ~d~~~~~~~~~~~~l~IsfD---~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp--- 146 (558)
T COG0143 73 VDKNHEEFKELFKALNISFD---NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCP--- 146 (558)
T ss_pred HHHHHHHHHHHHHHhCCccc---ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCC---
Confidence 99999999999999999999 899999999999999999999999999999999999999999999999874330
Q ss_pred ccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCceEe
Q psy17125 177 KSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIEVV 256 (1281)
Q Consensus 177 ~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 256 (1281)
T Consensus 147 -------------------------------------------------------------------------------- 146 (558)
T COG0143 147 -------------------------------------------------------------------------------- 146 (558)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCCCCC
Q psy17125 257 CDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGL 336 (1281)
Q Consensus 257 ~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~~~~ 336 (1281)
.+|.++ ..|.-|++||-
T Consensus 147 ---------------------------------------------~cg~~~----------------arGD~Ce~Cg~-- 163 (558)
T COG0143 147 ---------------------------------------------KCGGED----------------ARGDQCENCGR-- 163 (558)
T ss_pred ---------------------------------------------CcCccc----------------cCcchhhhccC--
Confidence 000000 01112222210
Q ss_pred CCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccccCCc
Q psy17125 337 EGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHDRP 416 (1281)
Q Consensus 337 ~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~~~ 416 (1281)
+
T Consensus 164 ------------------------------------~------------------------------------------- 164 (558)
T COG0143 164 ------------------------------------T------------------------------------------- 164 (558)
T ss_pred ------------------------------------c-------------------------------------------
Confidence 0
Q ss_pred ccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEeeh
Q psy17125 417 GTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAK 496 (1281)
Q Consensus 417 ~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~ 496 (1281)
T Consensus 165 -------------------------------------------------------------------------------- 164 (558)
T COG0143 165 -------------------------------------------------------------------------------- 164 (558)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCee
Q psy17125 497 CLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVL 576 (1281)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~ 576 (1281)
+ .|
T Consensus 165 ------------------------~------~P----------------------------------------------- 167 (558)
T COG0143 165 ------------------------L------DP----------------------------------------------- 167 (558)
T ss_pred ------------------------C------Cc-----------------------------------------------
Confidence 0 00
Q ss_pred cccCCCCccCCCCCCCCCCceeccccchhHHhhhccccccccccccccCcccCCCCceEEccccccccChhhHHHHHHHh
Q psy17125 577 NLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALAC 656 (1281)
Q Consensus 577 ~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~ 656 (1281)
.....|.|++||..++++.+++|||+++++++++++|
T Consensus 168 -------------------------------------------~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~ 204 (558)
T COG0143 168 -------------------------------------------TELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEW 204 (558)
T ss_pred -------------------------------------------hhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHH
Confidence 0001377888999999999999999999999999999
Q ss_pred hhcc--cccchhHHHHHHHHHHc-CCCccccc-ccCCCccceeEecCCeEEechhhH-HHHHhhhhhcCCCCccCcCccc
Q psy17125 657 LEEV--NFVPESAKKTLRDQIAQ-RPYWCISR-QRVWGVPIPVFYDGDTIIVNEANI-KHFCTLIDEHGPDFWWSLSVEQ 731 (1281)
Q Consensus 657 ~~~~--~~~P~~~r~~~~~~l~~-l~DW~ISR-qr~WG~pIP~~~~~~~i~v~~~~~-~~i~~~~~~~g~d~~~~~~~~~ 731 (1281)
+++. .+.|.+.|+.+.+||+. ++|||||| ...||+||| ...++.+|||.+.+ .++.......
T Consensus 205 ~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP-~~p~kv~YVWfDAligYisa~~~~~------------ 271 (558)
T COG0143 205 YESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVP-GDPGKVIYVWFDALIGYISALGELA------------ 271 (558)
T ss_pred HHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCC-CCCCCEEEEeeccHHHHHHHhcchh------------
Confidence 9874 57899999999999987 99999999 789999999 33478899997754 4444321100
Q ss_pred cccccccccccccccccccccccCCcchhhhccCCCcc----ceeeccceeeeh--hhHHHHHHHHhcCCCCCceEEeec
Q psy17125 732 LLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDKPAH----VYMEGMDQINGW--FMSSLLTSVALKHTAPFRNVFLHG 805 (1281)
Q Consensus 732 l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~~~p~d----l~~~G~Dii~~w--f~~~l~~~~~l~~~~Pf~~v~~hG 805 (1281)
. ..+..-++.| ||.| +|+.||||++|| |++.++++..+ ..| ++|++||
T Consensus 272 ---------~-~~~~~~~~~~-------------W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~--~lP-~~i~ahg 325 (558)
T COG0143 272 ---------E-IGDDEDFKKF-------------WPADDTELVHFIGKDIIRFHAVYWPAMLMAAGL--PLP-TRIFAHG 325 (558)
T ss_pred ---------c-cCChHHHHhh-------------CCCCCceEEEEeccccCcchhhHHHHHHHhCCC--CCC-CEEEeee
Confidence 0 0011111222 5666 899999999999 67777766555 356 9999999
Q ss_pred eeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcc
Q psy17125 806 FVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKN 885 (1281)
Q Consensus 806 ~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~ 885 (1281)
|++ .+|+|||||+||+|+|.++++ .||+|++||||+...+.++|.+|+.+
T Consensus 326 ~l~-~~G~KmSKSrG~~V~~~~~~~-----------------------------~~~~D~lRYyL~~~~p~~~D~dFs~~ 375 (558)
T COG0143 326 FLT-LEGQKMSKSRGNVVDPDELLE-----------------------------QYGVDALRYYLARELPEGSDGDFSWE 375 (558)
T ss_pred eEE-ECCccccccCCcEEeHHHHHH-----------------------------HcCchHhHHHHHHhCCCCCCCCCCHH
Confidence 998 799999999999999999999 99999999999999999999999999
Q ss_pred hhccc--hHHHHHHHHHHHHHHHhhcCCCCCCCCc----CcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q psy17125 886 ILNSS--QDDVQKIRSSLRYLLGVLHNHSESTGSI----SRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVN 959 (1281)
Q Consensus 886 ~l~~~--~~~~~kl~n~~r~~~~~l~~~~~~~~~~----~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~ 959 (1281)
.+... .++.+++.|++++.++.+.++..+..+. ....|+.++....++...+.++|++++|++|++.++.++
T Consensus 376 ~f~~rvN~dL~n~lgNl~~R~~~fi~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~-- 453 (558)
T COG0143 376 DFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALA-- 453 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--
Confidence 99774 4499999999999999887776554211 125788899999999999999999999999999999999
Q ss_pred hhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCC
Q psy17125 960 ELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSR 1019 (1281)
Q Consensus 960 ~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~ 1019 (1281)
...|.|++..+||...++...++..+++.++.++++.++.||+||||.+|+++|++|+..
T Consensus 454 ~~~N~Yi~~~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~ 513 (558)
T COG0143 454 SRANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLE 513 (558)
T ss_pred HHHHHHhhcCCCchhhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCc
Confidence 668999999999987766334444567889999999999999999999999999999865
No 34
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-71 Score=699.75 Aligned_cols=311 Identities=20% Similarity=0.299 Sum_probs=255.0
Q ss_pred cccCCCCceEEccccccccChhhHHHHHHHhhhcc--cccchhHHHHHH-HHHHc-CCCccccccc-CCCccceeEecCC
Q psy17125 626 YDWRTKKPVILKASQQWFIDTERIKPEALACLEEV--NFVPESAKKTLR-DQIAQ-RPYWCISRQR-VWGVPIPVFYDGD 700 (1281)
Q Consensus 626 ~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~--~~~P~~~r~~~~-~~l~~-l~DW~ISRqr-~WG~pIP~~~~~~ 700 (1281)
+|+|||+|++++.++||||+++++++++.+++++. .+.|+..++++. +||++ ++|||||||+ .||+|||. ..++
T Consensus 145 ~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~-~~~~ 223 (648)
T PRK12267 145 KCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPF-DPKH 223 (648)
T ss_pred cCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCC-CCCC
Confidence 46668888899999999999999999999999864 357999999999 99997 9999999997 79999995 1134
Q ss_pred eEEechhhHHHHHhhhhhcCCCCccCcCccccccccccccccccccccccccccCCcchhhhcc-----------CCCcc
Q psy17125 701 TIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLK-----------DKPAH 769 (1281)
Q Consensus 701 ~i~v~~~~~~~i~~~~~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~-----------~~p~d 769 (1281)
++|| ||||+++|.+.++ -||.|
T Consensus 224 v~yV-----------------------------------------------WfDA~~~y~s~~~~~~~~~~~~~~~wp~~ 256 (648)
T PRK12267 224 VVYV-----------------------------------------------WIDALLNYITALGYGSDDDELFKKFWPAD 256 (648)
T ss_pred EEEE-----------------------------------------------cccchHHHHHHcCCCCCCchHHHhhcccc
Confidence 4444 4444443322211 16899
Q ss_pred ceeeccceeeehh--hHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccc
Q psy17125 770 VYMEGMDQINGWF--MSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVIS 847 (1281)
Q Consensus 770 l~~~G~Dii~~wf--~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~ 847 (1281)
++++|+||++||. ++.++++. +..||++|++|||++ .+|+|||||+||+|+|.++++
T Consensus 257 ~~~~GkDii~fH~i~wpa~l~~~---~~~~p~~v~~hg~l~-~eg~KMSKS~GN~i~p~d~l~----------------- 315 (648)
T PRK12267 257 VHLVGKDILRFHAIYWPIMLMAL---GLPLPKKVFAHGWWL-MKDGKMSKSKGNVVDPEELVD----------------- 315 (648)
T ss_pred eEEEeeeecchhHHHHHHHHHhC---CCCCCcEEEecceEE-ECCceecccCCcccCHHHHHH-----------------
Confidence 9999999999984 44444432 345779999999999 589999999999999999999
Q ss_pred cccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhcc--chHHHHHHHHHHHHHHHhhcCCCCCC---CCcCcHH
Q psy17125 848 AHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNS--SQDDVQKIRSSLRYLLGVLHNHSEST---GSISRYV 922 (1281)
Q Consensus 848 ~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~--~~~~~~kl~n~~r~~~~~l~~~~~~~---~~~~~~~ 922 (1281)
+||+|++||||++.++..+|.+|+.+.+.. ..+++++++|++.++...+.++..+. .......
T Consensus 316 ------------~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~ 383 (648)
T PRK12267 316 ------------RYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEF 383 (648)
T ss_pred ------------HcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchh
Confidence 999999999999999999999999999866 34588999999998887665533222 1234567
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccC-CChHHHHHHHHHHHHHHHHHHHHh
Q psy17125 923 DVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDS-INGEARLSGLHTLHNIFHVLLRTV 1001 (1281)
Q Consensus 923 d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~-~~~~~r~~~~~~l~~~l~~l~~lL 1001 (1281)
|+|++++++++++++.++|++|+|++|++.+++|+ ..+|.|++..+||....+ ....+..+++.+++++++.+++||
T Consensus 384 D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~--~~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL 461 (648)
T PRK12267 384 DEELIALAEETLKNYEELMEELQFSRALEEVWKLI--SRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLL 461 (648)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 579999999999865433 223334567888999999999999
Q ss_pred ccccCccHHHHHhhCCCC
Q psy17125 1002 APIMPHLAEEVYSHLPSR 1019 (1281)
Q Consensus 1002 aP~~P~laeel~~~L~~~ 1019 (1281)
+|||||+||++|++|+..
T Consensus 462 ~P~~P~~ae~i~~~Lg~~ 479 (648)
T PRK12267 462 SPFMPETSKKIFEQLGLE 479 (648)
T ss_pred hCccchHHHHHHHHcCCC
Confidence 999999999999999853
No 35
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.9e-71 Score=695.52 Aligned_cols=495 Identities=21% Similarity=0.302 Sum_probs=397.9
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHH
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFAL 98 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~ 98 (1281)
++|+|+.|||||||.|||||+++++++|+++||+||+|++|++++|+|+||+||+.+|++++ ++| +++++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g---~~p-------~e~~~ 71 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEG---ITP-------EELIA 71 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcC---CCH-------HHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999876 788 56799
Q ss_pred HHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCCCCcCcc
Q psy17125 99 ETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKS 178 (1281)
Q Consensus 99 ~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~~~~~~~ 178 (1281)
++++.+++++++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++++|||.|+++|++.+|+..+
T Consensus 72 ~~~~~~~~~~~~l~i~~d---~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~c------ 142 (673)
T PRK00133 72 RYHAEHKRDFAGFGISFD---NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTC------ 142 (673)
T ss_pred HHHHHHHHHHHHhCCCCC---CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheeccc------
Confidence 999999999999999988 68899999999999999999999999999999999999999999998765211
Q ss_pred EEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCceEeec
Q psy17125 179 IYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIEVVCD 258 (1281)
Q Consensus 179 ~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 258 (1281)
T Consensus 143 -------------------------------------------------------------------------------- 142 (673)
T PRK00133 143 -------------------------------------------------------------------------------- 142 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCCCCCCC
Q psy17125 259 FPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEG 338 (1281)
Q Consensus 259 ~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~g 338 (1281)
|.++..| ..|..|+.||..
T Consensus 143 ------------------------------------------p~C~~~d----------------~~g~~ce~cg~~--- 161 (673)
T PRK00133 143 ------------------------------------------PKCGAED----------------QYGDNCEVCGAT--- 161 (673)
T ss_pred ------------------------------------------CCCCCcc----------------cCCchhhhcccc---
Confidence 1111110 112223322100
Q ss_pred ccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccccCCccc
Q psy17125 339 LNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHDRPGT 418 (1281)
Q Consensus 339 l~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~~~~t 418 (1281)
T Consensus 162 -------------------------------------------------------------------------------- 161 (673)
T PRK00133 162 -------------------------------------------------------------------------------- 161 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEeehhh
Q psy17125 419 ALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCL 498 (1281)
Q Consensus 419 ~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~ 498 (1281)
T Consensus 162 -------------------------------------------------------------------------------- 161 (673)
T PRK00133 162 -------------------------------------------------------------------------------- 161 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCeecc
Q psy17125 499 VENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNL 578 (1281)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~v 578 (1281)
T Consensus 162 -------------------------------------------------------------------------------- 161 (673)
T PRK00133 162 -------------------------------------------------------------------------------- 161 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccCCCCCCCCCCceeccccchhHHhhhccccccccccccccCcccCCCCceEEccccccccChhhHHHHHHHhhh
Q psy17125 579 ITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLE 658 (1281)
Q Consensus 579 id~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~ 658 (1281)
+... +...|+|.+||.+++++.++||||++++++++++++++
T Consensus 162 --------------~~~~------------------------~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~ 203 (673)
T PRK00133 162 --------------YSPT------------------------ELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWIT 203 (673)
T ss_pred --------------CChH------------------------hhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHh
Confidence 0000 00126788999999999999999999999999999997
Q ss_pred c-ccccchhHHHHHHHHHHc-CCCcccccccCC-CccceeEecCCeEEechhhHHHHHhhhhhcCCCCccCcCccccccc
Q psy17125 659 E-VNFVPESAKKTLRDQIAQ-RPYWCISRQRVW-GVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNT 735 (1281)
Q Consensus 659 ~-~~~~P~~~r~~~~~~l~~-l~DW~ISRqr~W-G~pIP~~~~~~~i~v~~~~~~~i~~~~~~~g~d~~~~~~~~~l~~~ 735 (1281)
+ ..+ |+..++.+.+||+. ++|||||||+.| |+|+|. .++.++|||.+.+...+....+.. +
T Consensus 204 ~~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~-~~~~~iyVW~dal~~Yl~~~~~~~-------------~- 267 (673)
T PRK00133 204 RSGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPG-APGKVFYVWLDAPIGYISSTKNLC-------------D- 267 (673)
T ss_pred cCCCC-CHHHHHHHHHHHhCCCcccceeeeCCccceECCC-CCCeEEEEcccchhhhhHHHhhhc-------------c-
Confidence 5 454 88999999999975 999999999999 999993 236689999875433222111000 0
Q ss_pred cccccccccccccccccccCCcchhhhccCCCccceeeccceeeeh--hhHHHHHHHHhcCCCCCceEEeeceeeccCCC
Q psy17125 736 SDVNSNVTKSNDILDIWFDSGISWSHVLKDKPAHVYMEGMDQINGW--FMSSLLTSVALKHTAPFRNVFLHGFVVDEKGA 813 (1281)
Q Consensus 736 ~~~~~~~~~~~dvlD~WFdS~l~w~~~l~~~p~dl~~~G~Dii~~w--f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~ 813 (1281)
..+.+.++.|+.... ....+++.|+||++|| +++.++++. ...+| ++|++||||++ +|+
T Consensus 268 -------~~~~~~~~~~w~~~~--------~~~~v~~iGkDi~~fH~i~wpa~l~a~--g~~lP-~~v~~hg~v~~-~G~ 328 (673)
T PRK00133 268 -------KRGGLDWDEYWKKDS--------DTELYHFIGKDIIYFHTLFWPAMLEGA--GYRLP-TNVFAHGFLTV-EGA 328 (673)
T ss_pred -------cccchhHHHhcCCCC--------CceEEEEEeecchhHHHHHHHHHHHhC--CCCCC-CEEeeeccEEe-cCC
Confidence 002234566652100 1223899999999999 566665553 23444 99999999996 999
Q ss_pred cccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCC-CccccCcchhcc--c
Q psy17125 814 KMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKD-PTVPIGKNILNS--S 890 (1281)
Q Consensus 814 KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~-~d~~f~~~~l~~--~ 890 (1281)
|||||+||+|+|.++++ +||+|++||||++.++.+ +|.+|+.+.+.. .
T Consensus 329 KMSKS~GNvV~p~dlie-----------------------------~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n 379 (673)
T PRK00133 329 KMSKSRGTFIWARTYLD-----------------------------HLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVN 379 (673)
T ss_pred cccccCCcccCHHHHHH-----------------------------HcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHH
Confidence 99999999999999999 999999999999999988 999999988754 4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhc
Q psy17125 891 QDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVK 970 (1281)
Q Consensus 891 ~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k 970 (1281)
.+++++++|+++++...+.+...+.. .....|+|++++++++++.+.++|++|+|++|++.+++|+ +++|+|++..+
T Consensus 380 ~~l~~~l~Nl~~R~~~~~~k~~~~~~-~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~N~yi~~~k 456 (673)
T PRK00133 380 SELVGKVVNFASRTAGFINKRFDGKL-PDALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALA--DFANKYVDDNE 456 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC-CCCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcC
Confidence 56899999999988776543322211 1245689999999999999999999999999999999998 68999999999
Q ss_pred ccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCC
Q psy17125 971 DRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSR 1019 (1281)
Q Consensus 971 ~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~ 1019 (1281)
||...++ +..++..++++++++++.+++||+|||||+||++|++|+..
T Consensus 457 pw~~~~~-~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~~ 504 (673)
T PRK00133 457 PWKLAKQ-DGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLE 504 (673)
T ss_pred ChhhhcC-CHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCCC
Confidence 9865443 33445567888899999999999999999999999999863
No 36
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=2.8e-71 Score=654.15 Aligned_cols=362 Identities=30% Similarity=0.529 Sum_probs=319.9
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhccc------CCCHHHHHHH
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDK------LLSPLDIRKK 92 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~------~~~~~e~~~~ 92 (1281)
|+|+|++|||||||.|||||+++++++|+++||+||+|++|++++|||+||+|||.+|+++++. +++++++.+.
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999887542 4789999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCC
Q psy17125 93 AKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKP 172 (1281)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~ 172 (1281)
|+++++++++.+++++++||+++||+| +++|++|.|.+.|+++|.+|+++|+||++.++|+|||.|+|+||++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~Dw~~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev---- 155 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSR-EYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV---- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCC-CcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----
Confidence 999999999999999999999999995 999999999999999999999999999999999999999988865432
Q ss_pred CCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCC
Q psy17125 173 DHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTD 252 (1281)
Q Consensus 173 ~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~ 252 (1281)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCC
Q psy17125 253 IEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDA 332 (1281)
Q Consensus 253 ~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~ 332 (1281)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccc
Q psy17125 333 GPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGIT 412 (1281)
Q Consensus 333 ~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~ 412 (1281)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceE
Q psy17125 413 HDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANV 492 (1281)
Q Consensus 413 ~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~ 492 (1281)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcC
Q psy17125 493 IVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEK 572 (1281)
Q Consensus 493 i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~ 572 (1281)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhccccccccccccccCcccCCCCceEEccccccccChhhHHHH
Q psy17125 573 IPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPE 652 (1281)
Q Consensus 573 lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~ 652 (1281)
|+|||+|++++.++||||++++++++
T Consensus 156 ------------------------------------------------------c~~cg~~~~~~~~~qwf~~l~~~~~~ 181 (382)
T cd00817 156 ------------------------------------------------------CSRSGDVIEPLLKPQWFVKVKDLAKK 181 (382)
T ss_pred ------------------------------------------------------cccCCCeEEEEecCeeEEehHHHHHH
Confidence 34466677778889999999999999
Q ss_pred HHHhhhc--ccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec--CCeEEechhhHHHHHhhhhhcCCCCccCcC
Q psy17125 653 ALACLEE--VNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD--GDTIIVNEANIKHFCTLIDEHGPDFWWSLS 728 (1281)
Q Consensus 653 ~~e~~~~--~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~--~~~i~v~~~~~~~i~~~~~~~g~d~~~~~~ 728 (1281)
+++++++ +.++|++.++++.+||++++|||||||+.||+|||+|+| ++.+.+.......+....
T Consensus 182 l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~~------------ 249 (382)
T cd00817 182 ALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAA------------ 249 (382)
T ss_pred HHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHhc------------
Confidence 9999987 788999999999999999999999999999999999998 366555443322221110
Q ss_pred ccccccccccccccccccccccccccCCcchhhhcc----------CCCccceeeccceeeehhhHHHHHHHHhcCCCCC
Q psy17125 729 VEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLK----------DKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPF 798 (1281)
Q Consensus 729 ~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~----------~~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf 798 (1281)
......+.+..+.++++|+|+||||+++|...++ -||+|++++|+||+++|+.++++.+.++.+..||
T Consensus 250 --~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~ 327 (382)
T cd00817 250 --PEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTGKLPF 327 (382)
T ss_pred --cccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhCCCch
Confidence 0111224456788999999999999987765543 1799999999999999999999999888888899
Q ss_pred ceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCC
Q psy17125 799 RNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDP 878 (1281)
Q Consensus 799 ~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~ 878 (1281)
+.+++||+|++.+|+|||||+||+|+|.++++ +||+|++|||+++.++.++
T Consensus 328 ~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~-----------------------------~~g~Da~R~~ll~~~~~~~ 378 (382)
T cd00817 328 KEVYLHGLVRDEDGRKMSKSLGNVIDPLDVID-----------------------------GYGADALRFTLASAATQGR 378 (382)
T ss_pred HHeEeeeeEECCCCCCccccCCCCCCHHHHHH-----------------------------hcCcHHHHHHHHhCCCccC
Confidence 99999999998899999999999999999999 9999999999999998888
Q ss_pred cccc
Q psy17125 879 TVPI 882 (1281)
Q Consensus 879 d~~f 882 (1281)
|.+|
T Consensus 379 D~~f 382 (382)
T cd00817 379 DINL 382 (382)
T ss_pred CCCC
Confidence 8776
No 37
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=9.2e-70 Score=664.87 Aligned_cols=321 Identities=21% Similarity=0.302 Sum_probs=255.7
Q ss_pred CCCceEEccccccccChhhHHHHHHHhhhcc--cccchhHHHHHHHHHHc-CCCccccccc-CCCccceeEecCCeEEec
Q psy17125 630 TKKPVILKASQQWFIDTERIKPEALACLEEV--NFVPESAKKTLRDQIAQ-RPYWCISRQR-VWGVPIPVFYDGDTIIVN 705 (1281)
Q Consensus 630 sg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~--~~~P~~~r~~~~~~l~~-l~DW~ISRqr-~WG~pIP~~~~~~~i~v~ 705 (1281)
||.|++++.+++|||+++++++.+.+++++. .+.|+..++.+.+||+. ++||||||++ .||+|+|. ..++++|||
T Consensus 214 ~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~-~~~~viYVW 292 (616)
T PLN02224 214 HQMPCVARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPD-DDKQTIYVW 292 (616)
T ss_pred CCCcceEEecceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCC-CCCcEEEEe
Confidence 6777788889999999999999999999753 35699999999999987 9999999997 79999994 237899999
Q ss_pred hhhHHHHHhhhhhcCCCCccCcCccccccccccccccccccccccccccCCcchhhhccCCCccceeeccceeeeh--hh
Q psy17125 706 EANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDKPAHVYMEGMDQINGW--FM 783 (1281)
Q Consensus 706 ~~~~~~i~~~~~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~~~p~dl~~~G~Dii~~w--f~ 783 (1281)
++.+-..+..... | ..+. ..+.||.. . ||.+++++|+|+++|| ++
T Consensus 293 fDAl~~Yls~~~~------~-----------------~~~~-~~~~~~~~--~-------w~~~v~~iGKDii~fH~i~w 339 (616)
T PLN02224 293 FDALLGYISALTE------D-----------------NKQQ-NLETAVSF--G-------WPASLHLIGKDILRFHAVYW 339 (616)
T ss_pred hhhHHHHHHHhcc------c-----------------cccc-ccchhhcc--C-------CCcceEEEeecccccHHHHH
Confidence 8865444432211 0 0000 11223221 1 6889999999999999 44
Q ss_pred HHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCch
Q psy17125 784 SSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGV 863 (1281)
Q Consensus 784 ~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGa 863 (1281)
+.++++ ....+| +++++||++. .+|+|||||+||+|+|.++++ +||+
T Consensus 340 pa~l~~--~g~~~P-~~i~~~g~l~-~eG~KMSKS~GN~i~p~e~l~-----------------------------~yga 386 (616)
T PLN02224 340 PAMLMS--AGLELP-KMVFGHGFLT-KDGMKMGKSLGNTLEPFELVQ-----------------------------KFGP 386 (616)
T ss_pred HHHHHH--CCCCCC-cEEEecccEe-cCCccccccCCccCCHHHHHH-----------------------------HcCc
Confidence 444443 333455 9999999985 899999999999999999999 9999
Q ss_pred hHHHHHHHhcCCCCCccccCcchhcc--chHHHHHHHHHHHHHHHhhcCCCCCCCC---cCcHHHHHHHHHHHHHHHHHH
Q psy17125 864 DVLRWWVAAHASKDPTVPIGKNILNS--SQDDVQKIRSSLRYLLGVLHNHSESTGS---ISRYVDVYMLKRLCEFQNTMD 938 (1281)
Q Consensus 864 DalR~~l~~~~~~~~d~~f~~~~l~~--~~~~~~kl~n~~r~~~~~l~~~~~~~~~---~~~~~d~~il~~l~~~~~~v~ 938 (1281)
|++||||++.++..+|.+|+.+.+.. ..++++.++|++++++..+.++..+... .....|.+++++++++++++.
T Consensus 387 D~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~li~~v~ 466 (616)
T PLN02224 387 DAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLVEKAQ 466 (616)
T ss_pred HHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999998754 3458999999999988766554332211 123457899999999999999
Q ss_pred HHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCC--ChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhC
Q psy17125 939 TLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSI--NGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016 (1281)
Q Consensus 939 ~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~--~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L 1016 (1281)
++|++++|++|++.+++++ +.+|+|++..+||....+. ...+..+++.++.++++.+++||+|||||+||++|++|
T Consensus 467 ~~me~~~~~~Al~~i~el~--~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~L 544 (616)
T PLN02224 467 TNYENLSLSSACEAVLEIG--NAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQL 544 (616)
T ss_pred HHHHhccHHHHHHHHHHHH--HHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHh
Confidence 9999999999999999998 7789999999999644322 12233456778999999999999999999999999999
Q ss_pred CCC
Q psy17125 1017 PSR 1019 (1281)
Q Consensus 1017 ~~~ 1019 (1281)
+..
T Consensus 545 g~~ 547 (616)
T PLN02224 545 GYS 547 (616)
T ss_pred CCC
Confidence 754
No 38
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.7e-68 Score=658.40 Aligned_cols=312 Identities=21% Similarity=0.308 Sum_probs=256.4
Q ss_pred CcccCCCCceEEccccccccChhhHHHHHHHhhhc-c-cccchhHHHHHHHHHHc-CCCccccc-ccCCCccceeEecCC
Q psy17125 625 PYDWRTKKPVILKASQQWFIDTERIKPEALACLEE-V-NFVPESAKKTLRDQIAQ-RPYWCISR-QRVWGVPIPVFYDGD 700 (1281)
Q Consensus 625 p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~-~-~~~P~~~r~~~~~~l~~-l~DW~ISR-qr~WG~pIP~~~~~~ 700 (1281)
|+|+|||+|++++.++|||++++.+++.+.+++++ . .+.|+..++++.+||++ ++|||||| |++||+|||. .+++
T Consensus 142 p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~-~~~~ 220 (511)
T PRK11893 142 YRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPG-DPKH 220 (511)
T ss_pred CCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCC-CCCc
Confidence 56888999999999999999999999999999987 3 35699999999999986 99999999 8899999995 1233
Q ss_pred eEEechhhHHHHHhhhhhcCCCCccCcCccccccccccccccccccccccccccCCcchhhhcc--------------CC
Q psy17125 701 TIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLK--------------DK 766 (1281)
Q Consensus 701 ~i~v~~~~~~~i~~~~~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~--------------~~ 766 (1281)
++|+ ||||+++|.+..+ -|
T Consensus 221 ~~~v-----------------------------------------------Wfda~~~y~s~~~~p~~~~~~~~~~~~~~ 253 (511)
T PRK11893 221 VIYV-----------------------------------------------WFDALTNYLTALGYPDDEELLAELFNKYW 253 (511)
T ss_pred eEEE-----------------------------------------------EecCcHHHHhHhccccccccchhHHHhcC
Confidence 4444 4444433222110 16
Q ss_pred CccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCccc
Q psy17125 767 PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVI 846 (1281)
Q Consensus 767 p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~ 846 (1281)
|.|++++|+|++++|......++.++..+.| +.+++|||++ .+|+|||||+||+|+|.++++
T Consensus 254 ~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p-~~~~~~g~v~-~~G~KMSKS~GN~i~~~dll~---------------- 315 (511)
T PRK11893 254 PADVHLIGKDILRFHAVYWPAFLMAAGLPLP-KRVFAHGFLT-LDGEKMSKSLGNVIDPFDLVD---------------- 315 (511)
T ss_pred CCcceEecccccccchhHHHHHHHhCCCCCC-CEEEeeccEE-ECCeeecccCCcEEcHHHHHH----------------
Confidence 8899999999999998777666666655777 9999999998 589999999999999999999
Q ss_pred ccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccc--hHHHHHHHHHHHHHHHhhcCCCCCC---CCcCcH
Q psy17125 847 SAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSS--QDDVQKIRSSLRYLLGVLHNHSEST---GSISRY 921 (1281)
Q Consensus 847 ~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~--~~~~~kl~n~~r~~~~~l~~~~~~~---~~~~~~ 921 (1281)
+||+|++||||++.++..+|++|+.+.+... .++.++++|+++++...+.+...+. ......
T Consensus 316 -------------~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~ 382 (511)
T PRK11893 316 -------------EYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTE 382 (511)
T ss_pred -------------HcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccch
Confidence 9999999999999988899999999998664 3477899999887765543221111 112456
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHh
Q psy17125 922 VDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTV 1001 (1281)
Q Consensus 922 ~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lL 1001 (1281)
.|++++++++++.+.+.++|++|+++.|++.+++|+ ..+|.|++..++|....+ +...+..++.+++++++.+++||
T Consensus 383 ~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~~pw~~~~~-~~~~~~~~l~~~~~~l~~l~~ll 459 (511)
T PRK11893 383 ADEALLEAAAALLERVRAAMDNLAFDKALEAILALV--RAANKYIDEQAPWSLAKT-DPERLATVLYTLLEVLRGIAVLL 459 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHhhCCChhhhcC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999 457999999999865432 34445678889999999999999
Q ss_pred ccccCccHHHHHhhCCC
Q psy17125 1002 APIMPHLAEEVYSHLPS 1018 (1281)
Q Consensus 1002 aP~~P~laeel~~~L~~ 1018 (1281)
+|||||+||++|+.|+.
T Consensus 460 ~P~~P~~ae~i~~~L~~ 476 (511)
T PRK11893 460 QPVMPELAAKILDQLGV 476 (511)
T ss_pred hCccchHHHHHHHHhCC
Confidence 99999999999999975
No 39
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=9.3e-63 Score=572.35 Aligned_cols=177 Identities=44% Similarity=0.827 Sum_probs=159.5
Q ss_pred ccccccChhhHHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec--CCeEEechhhHHHHHhhh
Q psy17125 639 SQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD--GDTIIVNEANIKHFCTLI 716 (1281)
Q Consensus 639 ~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~--~~~i~v~~~~~~~i~~~~ 716 (1281)
++||||+++++++.+++++++++++|+..++++.+||++++|||||||++||+|||+|++ ++++++
T Consensus 150 ~~qwf~~l~~~~~~l~~~~~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~------------ 217 (338)
T cd00818 150 TPQWFIRVTKIKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGEVLV------------ 217 (338)
T ss_pred cCeEEEEcHHHHHHHHHHHhcCcEECHHHHHHHHHHHhcchhcceeeecccCceeeEEEecCCCeEEE------------
Confidence 468999999999999999999888999999999999999999999999999999999887 355554
Q ss_pred hhcCCCCccCcCccccccccccccccccccccccccccCCcchhhhcc---------C-CCccceeeccceeeehhhHHH
Q psy17125 717 DEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLK---------D-KPAHVYMEGMDQINGWFMSSL 786 (1281)
Q Consensus 717 ~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~---------~-~p~dl~~~G~Dii~~wf~~~l 786 (1281)
.++++|+|+||||++.+...++ . ||+|++++|+||+++||++++
T Consensus 218 --------------------------~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~~wf~~~~ 271 (338)
T cd00818 218 --------------------------RRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLL 271 (338)
T ss_pred --------------------------ecCCceEEEEEeCCCCHHHHcCCCCcchhhhccCCCeEEeecchHHhHHHHHHH
Confidence 2367899999999876554431 1 799999999999999999999
Q ss_pred HHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHH
Q psy17125 787 LTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVL 866 (1281)
Q Consensus 787 ~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDal 866 (1281)
+.++++.+..||+++++||++++.+|+|||||+||+|+|.++++ +||+|++
T Consensus 272 ~~~~~~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~-----------------------------~~~~D~~ 322 (338)
T cd00818 272 LLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVD-----------------------------KYGADAL 322 (338)
T ss_pred HHHHHhcCCCccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHH-----------------------------HcCcHHH
Confidence 99998888899999999999998899999999999999999999 9999999
Q ss_pred HHHHHhcCCCCCcccc
Q psy17125 867 RWWVAAHASKDPTVPI 882 (1281)
Q Consensus 867 R~~l~~~~~~~~d~~f 882 (1281)
||||++.++.++|++|
T Consensus 323 R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 323 RLWVASSDVYAEDLRF 338 (338)
T ss_pred HHHHHhCCCccCCCCC
Confidence 9999999988888865
No 40
>KOG0436|consensus
Probab=100.00 E-value=4e-61 Score=526.03 Aligned_cols=352 Identities=20% Similarity=0.290 Sum_probs=274.4
Q ss_pred CCCceEEccccccccChhhHHHHHHHhhhcc--cccchhHHHHHHHHHHc-CCCccccc--cc-CCCccceeEec-CCeE
Q psy17125 630 TKKPVILKASQQWFIDTERIKPEALACLEEV--NFVPESAKKTLRDQIAQ-RPYWCISR--QR-VWGVPIPVFYD-GDTI 702 (1281)
Q Consensus 630 sg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~--~~~P~~~r~~~~~~l~~-l~DW~ISR--qr-~WG~pIP~~~~-~~~i 702 (1281)
||+||+++.+++|||+++++++.+.+++.+. .+.|+..+++...||+. ++|.+||| +| .||+|+|- + .++|
T Consensus 190 sg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~--ddsQtI 267 (578)
T KOG0436|consen 190 SGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPG--DDSQTI 267 (578)
T ss_pred cCCceeEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCC--CCcceE
Confidence 7888899999999999999999999999875 67799999999999987 99999999 55 89999995 5 5789
Q ss_pred EechhhHHHHHhhhhhcCCCCccCcCccccccccccccccccccccccccccCCcchhhhccCCCccceeeccceeeeh-
Q psy17125 703 IVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDKPAHVYMEGMDQINGW- 781 (1281)
Q Consensus 703 ~v~~~~~~~i~~~~~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~~~p~dl~~~G~Dii~~w- 781 (1281)
|||.+.+-..++.+ |.++ +..-+.+=+.+ + ||+.+|++||||++||
T Consensus 268 YVWfDAL~nYiSvi---g~~~---------------------~~~N~k~~ls~--~-------wPat~HvIGKDIlrFHa 314 (578)
T KOG0436|consen 268 YVWFDALLNYISVI---GYPN---------------------KQQNLKTALSF--G-------WPATLHVIGKDILRFHA 314 (578)
T ss_pred EEeHHHHhhHHHhh---cCCc---------------------hhccccceeec--C-------CCceeeehhhhhhhhhh
Confidence 99988664444433 2110 00011111111 1 7999999999999999
Q ss_pred -hhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCC
Q psy17125 782 -FMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPA 860 (1281)
Q Consensus 782 -f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~ 860 (1281)
+|+.+++++++ .+++.|++||+++ .+|.|||||+||||+|.++++ +
T Consensus 315 vYWPafLmaAGl---plP~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~-----------------------------k 361 (578)
T KOG0436|consen 315 VYWPAFLMAAGL---PLPKMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQ-----------------------------K 361 (578)
T ss_pred hhhHHHHHhcCC---CCccEEEEeeeee-ecceecchhhccccCHHHHHH-----------------------------H
Confidence 77888887776 3449999999998 899999999999999999999 9
Q ss_pred CchhHHHHHHHhcCCCCCccccCcchhccch--HHHHHHHHHHHHHHHh---hcCCCCCC---CCcCcHHHHHHHHHHHH
Q psy17125 861 YGVDVLRWWVAAHASKDPTVPIGKNILNSSQ--DDVQKIRSSLRYLLGV---LHNHSEST---GSISRYVDVYMLKRLCE 932 (1281)
Q Consensus 861 yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~--~~~~kl~n~~r~~~~~---l~~~~~~~---~~~~~~~d~~il~~l~~ 932 (1281)
||+|++||||+..+..+.|.+|+++.+.... .+.++++|+++++.+. ..+..... .......+..+.+.+++
T Consensus 362 ygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~k 441 (578)
T KOG0436|consen 362 YGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEK 441 (578)
T ss_pred hCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccCCcchhhccchHHHHHHH
Confidence 9999999999999999999999999998754 4889999999999872 11111111 11122334467888999
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCC--ChHHHHHHHHHHHHHHHHHHHHhccccCccHH
Q psy17125 933 FQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSI--NGEARLSGLHTLHNIFHVLLRTVAPIMPHLAE 1010 (1281)
Q Consensus 933 ~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~--~~~~r~~~~~~l~~~l~~l~~lLaP~~P~lae 1010 (1281)
+.+.+.+.|+.|++..|++.+...+ +-.|.|++..+||....+. +.+.....++.++++++++.+||+|+||.+|.
T Consensus 442 l~ev~a~~~d~f~~~~ale~V~si~--n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~ 519 (578)
T KOG0436|consen 442 LPEVAATNYDNFSLYSALEAVLSIG--NAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSL 519 (578)
T ss_pred hHHHHHhhcccccHHHHHHHHHHHH--HhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHH
Confidence 9999999999999999999999988 4468899999999655432 22223345778899999999999999999999
Q ss_pred HHHhhCCCCCCCCccccccccccccccchhheeeeecccccccccccce
Q psy17125 1011 EVYSHLPSRQGTFSSFCHFKVYLQYSGSIAKRILYCDSINGEARLSGLH 1059 (1281)
Q Consensus 1011 el~~~L~~~~~~~~s~~~~~~~p~~~~~i~kd~~y~~~vngk~R~s~q~ 1059 (1281)
+++++|+.... -+++.++. .+-.++.|+.+-+-+.|+-+..
T Consensus 520 ~llsqlgvsk~-qrsl~~~~-------~vf~~~~ygk~s~~kgr~v~~k 560 (578)
T KOG0436|consen 520 RLLSQLGVSKD-QRSLITWS-------PVFAPIEYGKESDEKGRKVGKK 560 (578)
T ss_pred HHHHHcCCChh-hcccccch-------hccCchhccCCCCcccccCCcc
Confidence 99999998764 24544432 2345566777766666665443
No 41
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=7.6e-56 Score=521.32 Aligned_cols=386 Identities=24% Similarity=0.348 Sum_probs=283.6
Q ss_pred EEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Q psy17125 21 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALET 100 (1281)
Q Consensus 21 f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~ 100 (1281)
|+|+.|+|||||.|||||+++++.+|+++||+||+|++|+++.|+|+||++|+.+|++++ ++| +++|+++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g---~~p-------~~~~~~~ 70 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQG---IDP-------EEFCDKY 70 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTT---S-H-------HHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcC---CCH-------HHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999987 789 6679999
Q ss_pred HHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCCCCcCccEE
Q psy17125 101 INTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIY 180 (1281)
Q Consensus 101 ~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~~~~~~~~~ 180 (1281)
++.+++.++++||++| .+.+|+++.|.++|+++|.+|+++|+||+++..++||+.|++.|+|.+|+..+
T Consensus 71 ~~~~~~~~~~~~I~~D---~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~C-------- 139 (391)
T PF09334_consen 71 SAKFKELLEALNISYD---RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTC-------- 139 (391)
T ss_dssp HHHHHHHHHHTT---S---EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEE--------
T ss_pred HHHHHHHHHHcCCCCc---ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccc--------
Confidence 9999999999999999 79999999999999999999999999999999999999999999999986322
Q ss_pred EEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCceEeeccc
Q psy17125 181 LKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIEVVCDFP 260 (1281)
Q Consensus 181 vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 260 (1281)
T Consensus 140 -------------------------------------------------------------------------------- 139 (391)
T PF09334_consen 140 -------------------------------------------------------------------------------- 139 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCCCCCCCcc
Q psy17125 261 GQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLN 340 (1281)
Q Consensus 261 G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~gl~ 340 (1281)
|.++.+ ...|..
T Consensus 140 ----------------------------------------P~C~~~----------------~a~g~~------------ 151 (391)
T PF09334_consen 140 ----------------------------------------PYCGSD----------------KARGDQ------------ 151 (391)
T ss_dssp ----------------------------------------TTT--S----------------SCTTTE------------
T ss_pred ----------------------------------------cCcCcc----------------ccCCCc------------
Confidence 000000 001112
Q ss_pred ccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccccCCccccc
Q psy17125 341 ILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHDRPGTAL 420 (1281)
Q Consensus 341 ~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~~~~t~l 420 (1281)
|..||.+++..
T Consensus 152 -----------------------------Ce~cG~~~~~~---------------------------------------- 162 (391)
T PF09334_consen 152 -----------------------------CENCGRPLEPE---------------------------------------- 162 (391)
T ss_dssp -----------------------------ETTTSSBEECC----------------------------------------
T ss_pred -----------------------------ccCCCCCcccc----------------------------------------
Confidence 22222110000
Q ss_pred ccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEeehhhHH
Q psy17125 421 AESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVE 500 (1281)
Q Consensus 421 aeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~ 500 (1281)
T Consensus 163 -------------------------------------------------------------------------------- 162 (391)
T PF09334_consen 163 -------------------------------------------------------------------------------- 162 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCeecccC
Q psy17125 501 NLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLIT 580 (1281)
Q Consensus 501 ~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid 580 (1281)
T Consensus 163 -------------------------------------------------------------------------------- 162 (391)
T PF09334_consen 163 -------------------------------------------------------------------------------- 162 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCCCCCCCCceeccccchhHHhhhccccccccccccccCcccCCCCceEEccccccccChhhHHHHHHHhhhcc
Q psy17125 581 NQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEV 660 (1281)
Q Consensus 581 ~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~ 660 (1281)
+...|.|..||++++++.+++|||+++++++++.+++++.
T Consensus 163 ----------------------------------------~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~ 202 (391)
T PF09334_consen 163 ----------------------------------------ELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESN 202 (391)
T ss_dssp ----------------------------------------CSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHS
T ss_pred ----------------------------------------cccCCccccccccCccccceEEEEehHHhHHHHHHHHhcC
Confidence 0012667779999999999999999999999999999876
Q ss_pred c-ccchhHHHHHHHHHHc-CCCcccccccCCCccceeEecCCeEEechhhH-HHHHhhhhhcCCCCccCcCccccccccc
Q psy17125 661 N-FVPESAKKTLRDQIAQ-RPYWCISRQRVWGVPIPVFYDGDTIIVNEANI-KHFCTLIDEHGPDFWWSLSVEQLLNTSD 737 (1281)
Q Consensus 661 ~-~~P~~~r~~~~~~l~~-l~DW~ISRqr~WG~pIP~~~~~~~i~v~~~~~-~~i~~~~~~~g~d~~~~~~~~~l~~~~~ 737 (1281)
. +.|...++.+.+||+. ++||||||...||+|+| ...++++|||++.+ .++.. +.... +
T Consensus 203 ~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP-~~~~~~iyVWfdal~~Ylt~-~~~~~---------~------- 264 (391)
T PF09334_consen 203 PDFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVP-GDPGQVIYVWFDALIGYLTA-TGYLA---------E------- 264 (391)
T ss_dssp TTSSHHHHHHHHHHHHHT----EE-ECTTSSSEEET-TEEEEEE-HHHHHHTHHHHT-TTTTH---------H-------
T ss_pred CCCCChhHHHHHHHHhhcccCceeeecCCCCcceee-ccCCceEEEcchHHHHHHHH-hcccc---------c-------
Confidence 3 4788888888999988 99999999999999999 23377899998754 44432 21000 0
Q ss_pred cccccccccccccccccCCcchhhhccCCCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccc
Q psy17125 738 VNSNVTKSNDILDIWFDSGISWSHVLKDKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSK 817 (1281)
Q Consensus 738 ~~~~~~~~~dvlD~WFdS~l~w~~~l~~~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSK 817 (1281)
. ..+......|+.. ...+.-+++.|+|+++||......+.++..-++| +++++|||++ .+|+||||
T Consensus 265 ---~-~~~~~~~~~~w~~--------~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~lP-~~i~~~~~~~-~~g~K~Sk 330 (391)
T PF09334_consen 265 ---K-RGDPEEFKKWWAN--------DSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLPLP-RRIVVHGFLT-LDGEKMSK 330 (391)
T ss_dssp ---H-TTTSHHHHHHHCS--------T--SEEEEEEEGGGHHHHHTHHHHHHHHCTB----SEEEEE--EE-ETTCCEET
T ss_pred ---c-ccccchhhhhccc--------cCCceEEEEEccchhHHHHHHhHHHHhcccCCCC-CEEEeeeeEE-ECCeeccc
Confidence 0 0011112222210 0134558999999999994444433444544566 9999999998 89999999
Q ss_pred cCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccch--HHHH
Q psy17125 818 SVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQ--DDVQ 895 (1281)
Q Consensus 818 S~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~--~~~~ 895 (1281)
|+||+|+|.++++ +||+|++||||++.++..+|.+|+.+.+.... .+.+
T Consensus 331 S~gn~i~~~~~~~-----------------------------~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~ 381 (391)
T PF09334_consen 331 SRGNVIWPDDLLE-----------------------------EYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELAN 381 (391)
T ss_dssp TTTESSBHHHHHH-----------------------------HH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCC
T ss_pred cCCcccCHHHHHH-----------------------------hCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999998886643 4789
Q ss_pred HHHHHHHHHH
Q psy17125 896 KIRSSLRYLL 905 (1281)
Q Consensus 896 kl~n~~r~~~ 905 (1281)
.++|+++|++
T Consensus 382 ~~gNl~~R~~ 391 (391)
T PF09334_consen 382 TLGNLVNRVL 391 (391)
T ss_dssp CHHHHHHHHH
T ss_pred hhhhHHhccC
Confidence 9999998864
No 42
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=6.5e-54 Score=495.86 Aligned_cols=133 Identities=39% Similarity=0.711 Sum_probs=124.9
Q ss_pred cEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcc---cCCCHHHHHHHHHHH
Q psy17125 20 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD---KLLSPLDIRKKAKNF 96 (1281)
Q Consensus 20 ~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~---~~~~~~e~~~~~~~~ 96 (1281)
||+|++|||||||.|||||+++++++|+++||+||+||+|.+++||||||+||+.+|+++++ +....+++.+.|+++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEF 80 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999875 234567788899999
Q ss_pred HHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcce
Q psy17125 97 ALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPV 153 (1281)
Q Consensus 97 ~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v 153 (1281)
|+++++.++++|++|||++||+ .++.|+++.|.+.++++|.+|+++|+||++.++|
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~-~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v 136 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWS-DEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV 136 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCC-CCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee
Confidence 9999999999999999999999 5999999999999999999999999999887655
No 43
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=3.1e-51 Score=473.98 Aligned_cols=132 Identities=27% Similarity=0.380 Sum_probs=125.3
Q ss_pred cEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q psy17125 20 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALE 99 (1281)
Q Consensus 20 ~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~ 99 (1281)
+|+|+.|||||||.|||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|++++ ++| +++++.
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g---~~~-------~e~~~~ 70 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEG---VTP-------QELCDK 70 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcC---CCH-------HHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999876 788 567999
Q ss_pred HHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcccccc
Q psy17125 100 TINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALA 164 (1281)
Q Consensus 100 ~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~la 164 (1281)
+++.+++++++|||.+| .+++|+++.|.+.++++|.+|+++|++|++...++|||.|+++|+
T Consensus 71 ~~~~~~~~l~~LgI~~D---~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~ 132 (319)
T cd00814 71 YHEIFKDLFKWLNISFD---YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP 132 (319)
T ss_pred HHHHHHHHHHHcCCcCC---CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee
Confidence 99999999999999888 688999999999999999999999999999999999999887775
No 44
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=6.7e-48 Score=444.41 Aligned_cols=126 Identities=31% Similarity=0.543 Sum_probs=120.8
Q ss_pred cEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q psy17125 20 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALE 99 (1281)
Q Consensus 20 ~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~ 99 (1281)
||+|++|||||||.+||||+++++.+|+++||+||+|++|.+++|+|+||+||+.+|++.+ .++ ++++++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g---~~~-------~e~~~~ 70 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIG---RDP-------EDWTEY 70 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcC---CCH-------HHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999998875 566 788999
Q ss_pred HHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeec
Q psy17125 100 TINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWS 156 (1281)
Q Consensus 100 ~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~ 156 (1281)
+.+.+++++++||+++||+ .+++|++|.|.+.++++|.+|+++|+||++.++++||
T Consensus 71 ~~~~~~~~~~~lgi~~d~~-~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~ 126 (314)
T cd00812 71 NIKKMKEQLKRMGFSYDWR-REFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC 126 (314)
T ss_pred HHHHHHHHHHHhccceecc-cccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee
Confidence 9999999999999999999 4999999999999999999999999999999999999
No 45
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=4.7e-48 Score=499.35 Aligned_cols=159 Identities=40% Similarity=0.851 Sum_probs=145.8
Q ss_pred CccCCCcccCCCCCCCCCCCchh-ccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcccceecccccccHHHHH
Q psy17125 1107 NLITNQGKYSPDAGPGLEGLNIL-GEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 1184 (1281)
Q Consensus 1107 ~~i~~~G~~~~~~~~~~~g~~~~-~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~ 1184 (1281)
++||++|+|++++| .|+||.++ +||++|+.+|.+.|+| +.|+++|+||||||||+|||+|+|+||||+++.++++|+
T Consensus 364 ~~vd~~G~~~~~~~-~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al 442 (974)
T PLN02843 364 SPVDDAGKFTEEAG-QFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAL 442 (974)
T ss_pred cccCCCceEccCCc-ccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHHH
Confidence 66899999999876 59999998 8998989889998865 899999999999999999999999999999999999999
Q ss_pred HhhcCceeeccccHHHHHHHHccCCceeeecccccCceecEEEeCC--ceeechhhhhhhhcccCcCcccccccCCcccc
Q psy17125 1185 ACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPVFYDGD--TIIVNEANIKHFCTLIDEHGPDFWWSLPVEQL 1262 (1281)
Q Consensus 1185 ~~~~~~~~~P~~~~~~~~~~~~~~~dWciSRqr~wG~~iP~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~Wf~~~~~~~ 1262 (1281)
+++++|+|+|+++++|+.+||++|+||||||||+||||||+|||.+ +.+++.+.+.++++++++.|+|.||..++++|
T Consensus 443 ~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~l 522 (974)
T PLN02843 443 DAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDL 522 (974)
T ss_pred HHHhccEEEChHHHHHHHHHHhcCcceeeeeccccccEEEEEEEcCCCCEeechhhHHHHHHHHHhhCCcccccCCHHHh
Confidence 9999999999999999999999999999999999999999999965 46778888888888778888888888888888
Q ss_pred cCCc
Q psy17125 1263 LNTS 1266 (1281)
Q Consensus 1263 ~~~~ 1266 (1281)
+|+.
T Consensus 523 ~p~~ 526 (974)
T PLN02843 523 LPEK 526 (974)
T ss_pred Cccc
Confidence 8764
No 46
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=2.6e-47 Score=494.08 Aligned_cols=168 Identities=24% Similarity=0.456 Sum_probs=144.4
Q ss_pred Cccccceec--cCC---------CccCCCcccCCCCCCCCCCCchhccchHHHHhhccCCce-eeeeeeeccCccccCCC
Q psy17125 1095 SSFCHFKVY--HHL---------NLITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKK 1162 (1281)
Q Consensus 1095 ~~~~d~~~~--~~~---------~~i~~~G~~~~~~~~~~~g~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~ 1162 (1281)
|+++||+++ |+| ++||++|+|+++++ .|+||.+++||+.||+.|.+.|+| +.++++|+||||||||+
T Consensus 443 hg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~-~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~t 521 (1205)
T PTZ00427 443 YGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVE-EVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDT 521 (1205)
T ss_pred CChhHHHHHHHcCCCCccccccccccCCCceecCCCc-ccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCC
Confidence 777899886 665 36999999999876 599999999999999999999975 89999999999999999
Q ss_pred cEEEcccceecccccccHHHHHHhhcCceeecccc-HHHHHHHHccCCceeeecccccCceecEEEeCCc-eeechhhh-
Q psy17125 1163 PVILKASQQWFIDTERIKPEALACLEGVNFVPESA-KKSLRDQIAQRPYWCISRQRVWGVPIPVFYDGDT-IIVNEANI- 1239 (1281)
Q Consensus 1163 pv~~~~~~qwf~~~~~~~~~~~~~~~~~~~~P~~~-~~~~~~~~~~~~dWciSRqr~wG~~iP~~~~~~~-~~~~~~~~- 1239 (1281)
|||||+++||||+|+++++++++++++|+|+|+++ ++|+.+||+|++|||||||||||||||||||+++ .++..+++
T Consensus 522 pli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~ 601 (1205)
T PTZ00427 522 PLIYRAIPAWFIRVSNSTNELVKNNETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVICVESIK 601 (1205)
T ss_pred EEEEEecceeEEeCcHHHHHHHHcCCccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCCCCeEeccCCHH
Confidence 99999999999999999999999999999999999 5899999999999999999999999999999753 22211111
Q ss_pred -------------------hhh---h--------cccCcCcccccccCCccccc
Q psy17125 1240 -------------------KHF---C--------TLIDEHGPDFWWSLPVEQLL 1263 (1281)
Q Consensus 1240 -------------------~~~---~--------~~~~~~~~d~Wf~~~~~~~~ 1263 (1281)
+.+ + -.+++|++||||+|+...+.
T Consensus 602 el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a 655 (1205)
T PTZ00427 602 HLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYA 655 (1205)
T ss_pred HHHHHhccccchhhcccccChhhccCCccccccceeecCceEEEEEeCCCChHH
Confidence 110 0 13688999999999887753
No 47
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.2e-46 Score=490.51 Aligned_cols=157 Identities=24% Similarity=0.510 Sum_probs=135.2
Q ss_pred CCccCCCcccCCCCCCCCCCCchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcccceecccccccHHHHH
Q psy17125 1106 LNLITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 1184 (1281)
Q Consensus 1106 ~~~i~~~G~~~~~~~~~~~g~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~ 1184 (1281)
.++||++|+|+++++ .|+||.+++||+.|++.|.++|+| +.++++|+||||||||+|||||+++||||++++++++++
T Consensus 361 ~~~vd~~G~~~~~~~-~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l 439 (1159)
T PLN02882 361 PVPVDDDGCFTEKVT-DFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLL 439 (1159)
T ss_pred cceECCCceEccCCc-ccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHH
Confidence 367999999999876 599999999999999999999965 999999999999999999999999999999999999999
Q ss_pred HhhcCceeecccc-HHHHHHHHccCCceeeecccccCceecEEEeCCc--eee--chhh----------------hhhh-
Q psy17125 1185 ACLEGVNFVPESA-KKSLRDQIAQRPYWCISRQRVWGVPIPVFYDGDT--IIV--NEAN----------------IKHF- 1242 (1281)
Q Consensus 1185 ~~~~~~~~~P~~~-~~~~~~~~~~~~dWciSRqr~wG~~iP~~~~~~~--~~~--~~~~----------------~~~~- 1242 (1281)
+++++|+|+|+++ ++|+.+||++++||||||||+||||||+|||+++ .++ +.+. ++++
T Consensus 440 ~~~~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s~~el~~~~~~~~~dlh~~~id~i~ 519 (1159)
T PLN02882 440 ENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAELEKLSGVKVTDLHRHFIDHIT 519 (1159)
T ss_pred HhhCCcEEECCcchhhHHHHHHhcCcccceeeccccCCccceEEeCCCCeEEecCcHHHHHHHhCCchhhccccchhhhc
Confidence 9999999999999 4899999999999999999999999999999653 222 1111 1111
Q ss_pred ----h------cccCcCcccccccCCccccc
Q psy17125 1243 ----C------TLIDEHGPDFWWSLPVEQLL 1263 (1281)
Q Consensus 1243 ----~------~~~~~~~~d~Wf~~~~~~~~ 1263 (1281)
+ -..++|++||||+|+...+.
T Consensus 520 ~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a 550 (1159)
T PLN02882 520 IPSSRGPEFGVLRRVDDVFDCWFESGSMPYA 550 (1159)
T ss_pred cccccCCchhceEecCceeeeeeccCccHHH
Confidence 0 12467999999999886643
No 48
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-46 Score=455.42 Aligned_cols=219 Identities=28% Similarity=0.419 Sum_probs=182.0
Q ss_pred hhheeeeecccccccccccceeeeeeehhcccccCcccccchhhhhccCCCCCCCc-----Cccccceec--cCC---Cc
Q psy17125 1039 IAKRILYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTF-----SSFCHFKVY--HHL---NL 1108 (1281)
Q Consensus 1039 i~kd~~y~~~vngk~R~s~q~~l~~~~~~~~~~~~pilp~~aee~~~~~~~~~gt~-----~~~~d~~~~--~~~---~~ 1108 (1281)
+.-|.-.++..+.+ |++.......+ +|+....+|++||+ ++++.+|+|++ ||+|||+++ |+| ++
T Consensus 220 mlgdtAVaVhP~De-RYk~LvGk~v~----lPl~~r~IpIiaD~-~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i 293 (877)
T COG0525 220 LLGDTAVAVHPDDE-RYKHLVGKEVI----LPLVGREIPIIADE-YVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINI 293 (877)
T ss_pred cccceEEEECCCCh-hhHhhcCCEEe----cCCCCCeeeeecCc-ccCCcCCCceEEecCCCCchhhhhhhcCCCCceEE
Confidence 34555455555543 66555544444 25566778888888 56666666654 999999987 887 56
Q ss_pred cCCCcccCCCCCCCCCCCchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcccceecccccccHHHHHHhh
Q psy17125 1109 ITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACL 1187 (1281)
Q Consensus 1109 i~~~G~~~~~~~~~~~g~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~ 1187 (1281)
+|+||+++++++.+|+||+|++||++||++|.++|+| ++|+++|+||||||||+||||++|+||||++.++++.+++++
T Consensus 294 ~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~ 373 (877)
T COG0525 294 IDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAV 373 (877)
T ss_pred ECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHH
Confidence 9999999988764699999999999999999999986 999999999999999999999999999999999999999999
Q ss_pred c--CceeeccccHHHHHHHHccCCceeeecccccCceecEEEeCC--ceeechhhhhhh--------hc-ccCcCccccc
Q psy17125 1188 E--GVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPVFYDGD--TIIVNEANIKHF--------CT-LIDEHGPDFW 1254 (1281)
Q Consensus 1188 ~--~~~~~P~~~~~~~~~~~~~~~dWciSRqr~wG~~iP~~~~~~--~~~~~~~~~~~~--------~~-~~~~~~~d~W 1254 (1281)
+ +++|+|++++++|.+||++++|||||||||||||||||||++ ..++.++....- .. .+|+||+|||
T Consensus 374 ~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTW 453 (877)
T COG0525 374 KDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTW 453 (877)
T ss_pred hcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCCcEEeCCccccchhhhccCchhcccCCcchhhhh
Confidence 9 999999999999999999999999999999999999999954 356654422221 12 2799999999
Q ss_pred ccCCccccc
Q psy17125 1255 WSLPVEQLL 1263 (1281)
Q Consensus 1255 f~~~~~~~~ 1263 (1281)
|||++..|.
T Consensus 454 FSS~LwPfs 462 (877)
T COG0525 454 FSSSLWPFS 462 (877)
T ss_pred hhccccccc
Confidence 999999876
No 49
>KOG1247|consensus
Probab=100.00 E-value=2.8e-44 Score=393.21 Aligned_cols=486 Identities=17% Similarity=0.263 Sum_probs=371.2
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHH-HHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHH
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKIL-KDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAK 94 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~-~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~ 94 (1281)
.++..-+|+...||+|..+|+|++.+.++ +||+|||.+.+|++.+++.|+|++|.++|.+|.+++ ++| +
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg---~tP-------~ 80 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEG---LTP-------Q 80 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHcc---CCH-------H
Confidence 35666889999999999999999999555 999999999999999999999999999999999997 899 5
Q ss_pred HHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCCCC
Q psy17125 95 NFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDH 174 (1281)
Q Consensus 95 ~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~~~ 174 (1281)
+.++++...++.....++|++| .+-+|+.+...+.+|.+|.+|+++|++-..+-.+.+|..|++.|||..|+.++
T Consensus 81 elcdKyh~ihk~vy~Wf~IdfD---~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~c-- 155 (567)
T KOG1247|consen 81 ELCDKYHGIHKVVYDWFKIDFD---EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKC-- 155 (567)
T ss_pred HHHHhcchhHHHHHHhhccccc---ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccC--
Confidence 5599999999999999999999 78899999999999999999999999999999999999999999999987433
Q ss_pred cCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCce
Q psy17125 175 VSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIE 254 (1281)
Q Consensus 175 ~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 254 (1281)
T Consensus 156 -------------------------------------------------------------------------------- 155 (567)
T KOG1247|consen 156 -------------------------------------------------------------------------------- 155 (567)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCCC
Q psy17125 255 VVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGP 334 (1281)
Q Consensus 255 ~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~~ 334 (1281)
|.+|.||.+ |..|+++|-
T Consensus 156 ----------------------------------------------p~C~yd~AR----------------GDqcd~cG~ 173 (567)
T KOG1247|consen 156 ----------------------------------------------PFCGYDDAR----------------GDQCDKCGK 173 (567)
T ss_pred ----------------------------------------------CCCCCcccc----------------chhhhhhhh
Confidence 222223322 333333321
Q ss_pred CCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccccC
Q psy17125 335 GLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHD 414 (1281)
Q Consensus 335 ~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~ 414 (1281)
.++..
T Consensus 174 l~N~~--------------------------------------------------------------------------- 178 (567)
T KOG1247|consen 174 LVNAA--------------------------------------------------------------------------- 178 (567)
T ss_pred hcCHH---------------------------------------------------------------------------
Confidence 00000
Q ss_pred CcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEe
Q psy17125 415 RPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIV 494 (1281)
Q Consensus 415 ~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~ 494 (1281)
T Consensus 179 -------------------------------------------------------------------------------- 178 (567)
T KOG1247|consen 179 -------------------------------------------------------------------------------- 178 (567)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCC
Q psy17125 495 AKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIP 574 (1281)
Q Consensus 495 a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lp 574 (1281)
T Consensus 179 -------------------------------------------------------------------------------- 178 (567)
T KOG1247|consen 179 -------------------------------------------------------------------------------- 178 (567)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCCCCccCCCCCCCCCCceeccccchhHHhhhccccccccccccccCcccCCCCceEEccccccccChhhHHHHHH
Q psy17125 575 VLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 654 (1281)
Q Consensus 575 i~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~ 654 (1281)
+...|-|.-|..-.+++.+.+.|++++++++++.
T Consensus 179 ----------------------------------------------el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~le 212 (567)
T KOG1247|consen 179 ----------------------------------------------ELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLE 212 (567)
T ss_pred ----------------------------------------------HhcCcchheeccCCeeeeeeEEEEEhHHhHHHHH
Confidence 0001223333444567788999999999999999
Q ss_pred Hhhhcc---cccchhHHHHHHHHHHc-CCCcccccccCCCccceeEecCCeEEechhhHHHHHhhhhhcCCCCccCcCcc
Q psy17125 655 ACLEEV---NFVPESAKKTLRDQIAQ-RPYWCISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVE 730 (1281)
Q Consensus 655 e~~~~~---~~~P~~~r~~~~~~l~~-l~DW~ISRqr~WG~pIP~~~~~~~i~v~~~~~~~i~~~~~~~g~d~~~~~~~~ 730 (1281)
+|+++. .-+..+.++..+.||+. ++..||||+..||+|+|. + .
T Consensus 213 e~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPl--e------------~------------------- 259 (567)
T KOG1247|consen 213 EWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPL--E------------K------------------- 259 (567)
T ss_pred HHHHhccccCCCccchHHHHHHHHHccccccccccccccCCCcCh--h------------h-------------------
Confidence 999853 23456788999999987 889999999999999995 1 0
Q ss_pred ccccccccccccccccccccccccCCcchhhhccC----------CC--ccc-eeeccceeeehhhHHHHHHHHh--cCC
Q psy17125 731 QLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKD----------KP--AHV-YMEGMDQINGWFMSSLLTSVAL--KHT 795 (1281)
Q Consensus 731 ~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~~----------~p--~dl-~~~G~Dii~~wf~~~l~~~~~l--~~~ 795 (1281)
-.+.|+++|||+.+++.+++.. .| +++ .+.|||++.||- .++.+..+ ..+
T Consensus 260 -------------fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHt--viFP~s~lgt~en 324 (567)
T KOG1247|consen 260 -------------FKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHT--VIFPCSQLGTEEN 324 (567)
T ss_pred -------------hcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCccee--eecchhhhcCCCC
Confidence 0224667777776665544432 12 333 499999999882 22222233 233
Q ss_pred CC-CceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcC
Q psy17125 796 AP-FRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHA 874 (1281)
Q Consensus 796 ~P-f~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~ 874 (1281)
.+ -+++-+..++. .+..|+|||+|.+|...++.++ ..++|++||||++..
T Consensus 325 ~t~v~~l~aTeYLn-yE~gKFSKSrgvGvFG~~aqd~----------------------------gi~~~vWRyYLl~~R 375 (567)
T KOG1247|consen 325 YTVVHHLSATEYLN-YEDGKFSKSRGVGVFGNDAQDT----------------------------GIPASVWRYYLLYIR 375 (567)
T ss_pred chhheeechhhhhc-cccCcccccccccccccccccC----------------------------CCCHHHHHHHHhhcc
Confidence 33 24455556654 5666999999999998888662 456999999999999
Q ss_pred CCCCccccCcchhcc--chHHHHHHHHHHHHHHHhhcCCCCCCCC--cCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q psy17125 875 SKDPTVPIGKNILNS--SQDDVQKIRSSLRYLLGVLHNHSESTGS--ISRYVDVYMLKRLCEFQNTMDTLYGEFQYARAS 950 (1281)
Q Consensus 875 ~~~~d~~f~~~~l~~--~~~~~~kl~n~~r~~~~~l~~~~~~~~~--~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai 950 (1281)
|+.+|..|+.+.+.. ..++++.|+|++++++..+.....+..+ .+..-|+.+++.++++..+..++||.-++++|+
T Consensus 376 PEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l 455 (567)
T KOG1247|consen 376 PESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAMEKVKLREAL 455 (567)
T ss_pred CcccCCcCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988755 5569999999999998877654443321 222337789999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCC
Q psy17125 951 RVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSR 1019 (1281)
Q Consensus 951 ~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~ 1019 (1281)
+.+|... ...|.|++..+++.... .+..+...+..+.+.++..+..||+|+||.++.+++.+++..
T Consensus 456 ~~~m~is--~~GNqylQ~~~~~k~~~-~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp 521 (567)
T KOG1247|consen 456 KTAMEIS--RRGNQYLQENTDNKLYE-ESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLP 521 (567)
T ss_pred HHHHHHH--HhhhHHHhcccccchhh-hcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCCc
Confidence 9999977 67899999887543221 111122234566778889999999999999999999998655
No 50
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.7e-44 Score=467.71 Aligned_cols=136 Identities=29% Similarity=0.559 Sum_probs=125.5
Q ss_pred Cccccceec--cCC---CccCCCcccCCCCCCCCCCCchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcc
Q psy17125 1095 SSFCHFKVY--HHL---NLITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKA 1168 (1281)
Q Consensus 1095 ~~~~d~~~~--~~~---~~i~~~G~~~~~~~~~~~g~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~ 1168 (1281)
|++.||+++ |+| ++||++|+|++++| .|+||.+++||++|++.|.++|++ +.++++|+||||||||+|||+++
T Consensus 324 hg~~D~~~~~~~~l~~~~~id~~G~~~~~~~-~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~ 402 (975)
T PRK06039 324 FGEDDFEVGKKYGLPVVCPVDDDGRFTEEVP-DYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYA 402 (975)
T ss_pred CChHHHHHHHHcCCCccceeCCCceEcCCCc-cccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEe
Confidence 566677665 444 56899999998877 599999999999999999999976 89999999999999999999999
Q ss_pred cceecccccccHHHHHHhhcCceeeccccHH-HHHHHHccCCceeeecccccCceecEEEeCCc
Q psy17125 1169 SQQWFIDTERIKPEALACLEGVNFVPESAKK-SLRDQIAQRPYWCISRQRVWGVPIPVFYDGDT 1231 (1281)
Q Consensus 1169 ~~qwf~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~~~~~~~~dWciSRqr~wG~~iP~~~~~~~ 1231 (1281)
++|||++++++++++++++++++|+|+++++ ++.+||++++||||||||+||||||+|+|+++
T Consensus 403 ~~qWFi~~~~~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~~ 466 (975)
T PRK06039 403 TESWFIRVTKIKDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDC 466 (975)
T ss_pred cCeeeEecHHHHHHHHHhhCCeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecCC
Confidence 9999999999999999999999999999999 99999999999999999999999999999753
No 51
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.8e-43 Score=458.46 Aligned_cols=175 Identities=14% Similarity=0.161 Sum_probs=142.0
Q ss_pred ccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccccCCccccccccccccc
Q psy17125 349 VLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHDRPGTALAESELEYK 428 (1281)
Q Consensus 349 v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~~~~t~laeaeiey~ 428 (1281)
..+|.|+|+++.+ .|++.||++|++ +++++|++|.
T Consensus 228 f~~L~ekG~I~~g--~rpv~wcp~~~t-------------------------------------------~ladhe~~~~ 262 (1084)
T PLN02959 228 FRKLKKKGKIVKD--KRYTIYSPLDGQ-------------------------------------------PCADHDRASG 262 (1084)
T ss_pred HHHHHHCCCEEec--CeeeeeCCCCCC-------------------------------------------CchhhHHhcC
Confidence 3479999999988 589999977764 5666667776
Q ss_pred CCCCCcceeeh--hhccCCc-cccc-cCcccceeEEeeccccCCCcccccccCCccccceeccc-CceEEeehhhHHhHH
Q psy17125 429 PDHISKSIYLK--IKLNQVP-AHLL-EGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVK-GANVIVAKCLVENLK 503 (1281)
Q Consensus 429 ~~~~s~si~v~--~~~~~~~-~~~~-~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~-~~~~i~a~~~~~~~~ 503 (1281)
++.+++.|+. |++.+.. ..+. -..++.++++|||||||||||+|++|||+.+|+++++. ++.||+++.+++++.
T Consensus 263 -e~~~~~~y~~ikf~v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~~i~s~~~~~~~~ 341 (1084)
T PLN02959 263 -EGVGPQEYVLIKMEVLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLA 341 (1084)
T ss_pred -CCCCcceeEEEEEeecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeEEEEehhhhhhhH
Confidence 5778888855 5554321 1110 01245789999999999999999999999999999986 678999999988765
Q ss_pred hhcc----CCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHH
Q psy17125 504 WTFQ----TDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALA 570 (1281)
Q Consensus 504 ~~~~----~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~ 570 (1281)
.|.. .+++++++++|++|+|+.+.||+.+.+. +||+++.||++++|||+||+|||||++||+++++
T Consensus 342 ~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~~~~~-i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~d 411 (1084)
T PLN02959 342 YQNFSKVPGKPTCLVELTGYDLIGLPLKSPLAFNEV-IYALPMLTILTDKGTGVVTSVPSDSPDDYMALSD 411 (1084)
T ss_pred HhhhcccCCCcEEEEEEEHHHhCCCEEECCCCCCcc-eeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHh
Confidence 4321 1578999999999999999999987543 8999999999999999999999999999998875
No 52
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-42 Score=424.37 Aligned_cols=181 Identities=36% Similarity=0.677 Sum_probs=162.5
Q ss_pred ccCCCCCCCcCccc-------cceec--cC-C---CccCCCcccCCCCCCCCCCCchhccchHHHHhhccCC-ceeeeee
Q psy17125 1085 SHLPSRQGTFSSFC-------HFKVY--HH-L---NLITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPD-VLWTENY 1150 (1281)
Q Consensus 1085 ~~~~~~~gt~~~~~-------d~~~~--~~-~---~~i~~~G~~~~~~~~~~~g~~~~~~~~~~v~~l~~~~-~l~~e~~ 1150 (1281)
+|++.+.|||..|+ ||.++ +. + ++||++|+|+++++ .|+|+.+.+|++.||+.|.++| |++.|.+
T Consensus 318 d~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~-~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i 396 (933)
T COG0060 318 DHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAP-KYEGLFVKDANKKIIEDLKEKGNLLKSEKI 396 (933)
T ss_pred CeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccch-hhCCceeccCCHHHHHHHHhCCceeeeeeE
Confidence 35555667764444 89887 44 2 67999999999985 6999999999999999999977 5699999
Q ss_pred eeccCccccCCCcEEEcccceecccccccHHHHHHhhcCceeeccccHHHHHHHHccCCceeeecccccCceecEEEeCC
Q psy17125 1151 QHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPVFYDGD 1230 (1281)
Q Consensus 1151 ~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~dWciSRqr~wG~~iP~~~~~~ 1230 (1281)
+||||||||||||||||+|+||||+|+++|+++++++++|+|+|+++++|+.+||+||+||||||||+||+|||+|+|++
T Consensus 397 ~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~ 476 (933)
T COG0060 397 EHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKE 476 (933)
T ss_pred EeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred c--eee-chhhhhhhhcccCcCcccccccCCcccccCCc
Q psy17125 1231 T--IIV-NEANIKHFCTLIDEHGPDFWWSLPVEQLLNTS 1266 (1281)
Q Consensus 1231 ~--~~~-~~~~~~~~~~~~~~~~~d~Wf~~~~~~~~~~~ 1266 (1281)
+ +++ .+|..++++.+++++|+|.||...+++++++.
T Consensus 477 ~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~ 515 (933)
T COG0060 477 TGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPC 515 (933)
T ss_pred CCCeeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCC
Confidence 3 444 78899999999999999999999999999874
No 53
>KOG0433|consensus
Probab=100.00 E-value=4.8e-42 Score=398.48 Aligned_cols=192 Identities=42% Similarity=0.814 Sum_probs=174.8
Q ss_pred ccCcccccchhhhhccCCCCCCCc-------Cccccceec--cCC---CccCCCcccCCCCCCCCCCCchhccchHHHHh
Q psy17125 1071 TVAPIMPHLAEEVYSHLPSRQGTF-------SSFCHFKVY--HHL---NLITNQGKYSPDAGPGLEGLNILGEGKDQVLH 1138 (1281)
Q Consensus 1071 ~~~pilp~~aee~~~~~~~~~gt~-------~~~~d~~~~--~~~---~~i~~~G~~~~~~~~~~~g~~~~~~~~~~v~~ 1138 (1281)
...|+++ + .|++.+.||| |-+-||.++ +++ ++||++|+||.++|+.++|+.|+++++++|..
T Consensus 323 ~~~P~l~--g----~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~ 396 (937)
T KOG0433|consen 323 LGLPILE--G----PHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLR 396 (937)
T ss_pred cCCcccc--c----cceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCCceecccccccccchhhccccHhHHH
Confidence 3455555 3 5666788887 444488766 665 67999999999999999999999999999999
Q ss_pred hccCCceeeeeeeeccCccccCCCcEEEcccceecccccccHHHHHHhhcCceeeccccHHHHHHHHccCCceeeecccc
Q psy17125 1139 LVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRV 1218 (1281)
Q Consensus 1139 l~~~~~l~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~dWciSRqr~ 1218 (1281)
++.+.+++.++|+|+||||||||+||++|+|+|||+++++++..|++++++|+|+|..+.+|+..++..|++|||||||.
T Consensus 397 ~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~ 476 (937)
T KOG0433|consen 397 LLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVKVAPGDSDLRLKQLVTTRPSWCISRQRV 476 (937)
T ss_pred HHhhhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHHhhceeCCcchHHHHHHHHcCCCcceeeeccc
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceecEEEeCC--ceeechhhhhhhhcccCcCcccccccCCcccccCCccc
Q psy17125 1219 WGVPIPVFYDGD--TIIVNEANIKHFCTLIDEHGPDFWWSLPVEQLLNTSDV 1268 (1281)
Q Consensus 1219 wG~~iP~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~Wf~~~~~~~~~~~~~ 1268 (1281)
||+||||+|+++ .++++++.+.|++..++++|+|+||..++++|||+.++
T Consensus 477 WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~ 528 (937)
T KOG0433|consen 477 WGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEV 528 (937)
T ss_pred cCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhh
Confidence 999999999965 48889999999999999999999999999999999553
No 54
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=7.7e-40 Score=423.89 Aligned_cols=164 Identities=24% Similarity=0.343 Sum_probs=139.0
Q ss_pred ccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccccCCccccccccccccc
Q psy17125 349 VLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHDRPGTALAESELEYK 428 (1281)
Q Consensus 349 v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~~~~t~laeaeiey~ 428 (1281)
...|.++|+++.+ .|++.||++|++++-.+++ ++.
T Consensus 156 f~~L~e~G~iy~g--~~~v~wcp~~~t~lsd~e~-------------------------------------------~~~ 190 (938)
T TIGR00395 156 MNKLKELGLIVKG--EHPVRYCPKDGNPVEDHDL-------------------------------------------LSG 190 (938)
T ss_pred HHHHHHCCCEecC--CeeEeecCCCCCCCchhHh-------------------------------------------ccC
Confidence 3468899999877 5899999888876665553 332
Q ss_pred CCCC--CcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEeehhhHHhHHhhc
Q psy17125 429 PDHI--SKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKWTF 506 (1281)
Q Consensus 429 ~~~~--s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~ 506 (1281)
+.. ...++++|++.+. +.+++|||||||||+|++||||||+++|+++++.++.||+++++++++..+.
T Consensus 191 -e~~~~~~~~~ikf~~~~~---------~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~s~~~~~~~~~q~ 260 (938)
T TIGR00395 191 -EGVTIVEYILIKFELEDG---------AFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWITSKEAFENLSYQK 260 (938)
T ss_pred -CccccceEEEEEEEcCCC---------ceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEEeHHHHHhhhhcc
Confidence 111 2446778876432 3579999999999999999999999999999999999999999999988773
Q ss_pred cCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHH
Q psy17125 507 QTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALA 570 (1281)
Q Consensus 507 ~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~ 570 (1281)
.+++++++++|.+|+|+++.||+++.. +||++++||++++|||+||+|||||++||+++++
T Consensus 261 -~~~~~~~~~~g~~l~G~~~~~P~~~~~--ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~ 321 (938)
T TIGR00395 261 -LKYKPIEEVPGKQFIGKKVHNPVVGPE--VPILPAEFVDTTKGTGVVMSVPAHAPDDYIALED 321 (938)
T ss_pred -cceeEEEEEchHhccCCEEECCCCCCe--eEEeecceeecCCCcceEEeCCCCCHHHHHHHHH
Confidence 368889999999999999999998765 9999999999999999999999999999999875
No 55
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=7.8e-40 Score=424.83 Aligned_cols=200 Identities=22% Similarity=0.376 Sum_probs=163.1
Q ss_pred ccceeeeeeehhcccccCcccccchhhhhccCCCCCCCc-----Cccccceec--cCC---CccCCCcccCCCCCCCCCC
Q psy17125 1056 SGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTF-----SSFCHFKVY--HHL---NLITNQGKYSPDAGPGLEG 1125 (1281)
Q Consensus 1056 s~q~~l~~~~~~~~~~~~pilp~~aee~~~~~~~~~gt~-----~~~~d~~~~--~~~---~~i~~~G~~~~~~~~~~~g 1125 (1281)
.+..+.+|+. ...+|+++++.++.+.+|+|.+ |+++||+++ |+| ++||++|+|++++++.|+|
T Consensus 351 ~G~~~~~Pl~-------~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~G 423 (1066)
T PLN02381 351 HGKFAVHPFN-------GRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAG 423 (1066)
T ss_pred CCCEEECCCC-------CCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCC
Confidence 4445555543 3445666766455555555553 999999987 776 5699999999987656999
Q ss_pred CchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcccceecccccccHHHHHHhh-----cCceeeccccHH
Q psy17125 1126 LNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACL-----EGVNFVPESAKK 1199 (1281)
Q Consensus 1126 ~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~-----~~~~~~P~~~~~ 1199 (1281)
|++++||++||..|.+.|++ +.++|+|+|||||||++|||+++++||||+|++++++|++++ ++|+|+|+++++
T Consensus 424 l~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~ 503 (1066)
T PLN02381 424 MPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLA 503 (1066)
T ss_pred CCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHH
Confidence 99999999999999999986 899999999999999999999999999999999999999999 789999999999
Q ss_pred HHHHHHccCCceeeecccccCceecEEEeC--C-----------ceeechhhhhhh------h------cccCcCccccc
Q psy17125 1200 SLRDQIAQRPYWCISRQRVWGVPIPVFYDG--D-----------TIIVNEANIKHF------C------TLIDEHGPDFW 1254 (1281)
Q Consensus 1200 ~~~~~~~~~~dWciSRqr~wG~~iP~~~~~--~-----------~~~~~~~~~~~~------~------~~~~~~~~d~W 1254 (1281)
+|.+||+|++|||||||||||||||+|||. + ..++.....+.+ + -.+++|++|||
T Consensus 504 ~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtW 583 (1066)
T PLN02381 504 EWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTW 583 (1066)
T ss_pred HHHHHHhcCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEE
Confidence 999999999999999999999999999984 1 122222211110 1 12799999999
Q ss_pred ccCCcccc
Q psy17125 1255 WSLPVEQL 1262 (1281)
Q Consensus 1255 f~~~~~~~ 1262 (1281)
|+|+...+
T Consensus 584 F~Sg~~p~ 591 (1066)
T PLN02381 584 FSSGLFPL 591 (1066)
T ss_pred EeCCchHH
Confidence 99987664
No 56
>KOG0432|consensus
Probab=100.00 E-value=2e-39 Score=384.69 Aligned_cols=193 Identities=22% Similarity=0.358 Sum_probs=167.5
Q ss_pred ccccCcccccchhhhhccCCCCCCCc-----Cccccceec--cCC---CccCCCcccCCCCCCCCCCCchhccchHHHHh
Q psy17125 1069 LRTVAPIMPHLAEEVYSHLPSRQGTF-----SSFCHFKVY--HHL---NLITNQGKYSPDAGPGLEGLNILGEGKDQVLH 1138 (1281)
Q Consensus 1069 ~~~~~pilp~~aee~~~~~~~~~gt~-----~~~~d~~~~--~~~---~~i~~~G~~~~~~~~~~~g~~~~~~~~~~v~~ 1138 (1281)
+|++..-||.++| .++++.+|||++ ||++||+++ |+| |+|++||.+++.+| +|+||+||+||++||..
T Consensus 304 hP~~~r~lPiI~D-~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~g-ef~Gm~RFeAR~kvv~~ 381 (995)
T KOG0432|consen 304 HPFTGRKLPIICD-IAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCG-EFKGMKRFEAREKVVEK 381 (995)
T ss_pred cCCCCCccceeec-ccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccch-hccCcHHHHHHHHHHHH
Confidence 4566777788887 367777777775 999999987 887 57999999999988 69999999999999999
Q ss_pred hccCCce-eeeeeeeccCccccCCCcEEEcccceecccccccHHHHHHhhc--CceeeccccHHHHHHHHccCCceeeec
Q psy17125 1139 LVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLE--GVNFVPESAKKSLRDQIAQRPYWCISR 1215 (1281)
Q Consensus 1139 l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~--~~~~~P~~~~~~~~~~~~~~~dWciSR 1215 (1281)
|.|.||+ ..+++.+.+|.|.|||..|||++++|||+++++|+++|+++++ +++++|+.+++.+..|++|++||||||
T Consensus 382 L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSR 461 (995)
T KOG0432|consen 382 LKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISR 461 (995)
T ss_pred HHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhh
Confidence 9999987 7999999999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred ccccCceecEEEeC--------Cceee--chhhhhhhh-----------cccCcCcccccccCCccccc
Q psy17125 1216 QRVWGVPIPVFYDG--------DTIIV--NEANIKHFC-----------TLIDEHGPDFWWSLPVEQLL 1263 (1281)
Q Consensus 1216 qr~wG~~iP~~~~~--------~~~~~--~~~~~~~~~-----------~~~~~~~~d~Wf~~~~~~~~ 1263 (1281)
|+||||+||||+-. ++.++ +++..+..+ -.+|+||+||||||++.+|-
T Consensus 462 QLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS 530 (995)
T KOG0432|consen 462 QLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFS 530 (995)
T ss_pred hhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccch
Confidence 99999999999852 23555 333333221 13799999999999988764
No 57
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.9e-38 Score=408.27 Aligned_cols=197 Identities=35% Similarity=0.681 Sum_probs=161.7
Q ss_pred cceeeeeeehhcccccCcccccchhhhhccCCCCCCCc-------Cccccceec--cCC---CccCCCcccCCCCCCCCC
Q psy17125 1057 GLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTF-------SSFCHFKVY--HHL---NLITNQGKYSPDAGPGLE 1124 (1281)
Q Consensus 1057 ~q~~l~~~~~~~~~~~~pilp~~aee~~~~~~~~~gt~-------~~~~d~~~~--~~~---~~i~~~G~~~~~~~~~~~ 1124 (1281)
+.++.+|+. ....||++ + + ++..++||| |++.||+++ |+| ++||++|+|+++++ +|.
T Consensus 296 g~~~~~Pl~----~~~~pvi~--~-~---~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~-~~~ 364 (912)
T PRK05743 296 GLVAQHPFY----DRDSPVIL--G-D---HVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAP-LFA 364 (912)
T ss_pred CCEEECCCC----CCeeeEeC--C-C---ccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCc-ccC
Confidence 344555554 22356655 3 2 344555664 888899887 555 56999999999876 599
Q ss_pred CCchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcccceecccccc--cHHHHHHhhcCceeeccccHHHH
Q psy17125 1125 GLNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTER--IKPEALACLEGVNFVPESAKKSL 1201 (1281)
Q Consensus 1125 g~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~--~~~~~~~~~~~~~~~P~~~~~~~ 1201 (1281)
||++++||++|+..|.+.|++ +.++++|+||||||||+||++|+++|||+++++ ++++|++++++|+|+|+++++++
T Consensus 365 Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~P~~~~~r~ 444 (912)
T PRK05743 365 GLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAWGKNRI 444 (912)
T ss_pred CcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccEEEChHHHHHH
Confidence 999999999999999999965 899999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHccCCceeeecccccCceecEEEeCC--ceeechhhhhhhhcccCcCcccccccCCcccccC
Q psy17125 1202 RDQIAQRPYWCISRQRVWGVPIPVFYDGD--TIIVNEANIKHFCTLIDEHGPDFWWSLPVEQLLN 1264 (1281)
Q Consensus 1202 ~~~~~~~~dWciSRqr~wG~~iP~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~Wf~~~~~~~~~ 1264 (1281)
.+||++|+||||||||+||||||+|||++ .++++++.+.+++++++.+|+|.||+..+++|+|
T Consensus 445 ~~~i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~ 509 (912)
T PRK05743 445 ESMVENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLP 509 (912)
T ss_pred HHHHhcCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcC
Confidence 99999999999999999999999999975 3566777777666555555666666655555555
No 58
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.6e-38 Score=406.93 Aligned_cols=179 Identities=33% Similarity=0.660 Sum_probs=146.9
Q ss_pred cCcccccchhhhhccCCCCCCCc-------Cccccceec--cCC----CccCCCcccCCCCCC-------CCCCCchhcc
Q psy17125 1072 VAPIMPHLAEEVYSHLPSRQGTF-------SSFCHFKVY--HHL----NLITNQGKYSPDAGP-------GLEGLNILGE 1131 (1281)
Q Consensus 1072 ~~pilp~~aee~~~~~~~~~gt~-------~~~~d~~~~--~~~----~~i~~~G~~~~~~~~-------~~~g~~~~~~ 1131 (1281)
..||++ + + ++..++||| |++.||+++ |+| ++||++|+|+++++. .|+|+.+++|
T Consensus 329 ~~pvi~--~-~---~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea 402 (961)
T PRK13804 329 EVPVLD--G-D---HVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDA 402 (961)
T ss_pred eeEEEe--c-C---ccCCCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccCCCccccccccccCCcchhhh
Confidence 456655 3 2 444556664 888899886 677 459999999998753 2899999999
Q ss_pred chHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcccceecccccc-------cHHHHHHhhcCceeeccccHHHHHH
Q psy17125 1132 GKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTER-------IKPEALACLEGVNFVPESAKKSLRD 1203 (1281)
Q Consensus 1132 ~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~-------~~~~~~~~~~~~~~~P~~~~~~~~~ 1203 (1281)
|+.||..|.+.|+| +.++++|+||||||||+|||+|+|+||||+|++ ++++|++++++|+|+|+++++|+.+
T Consensus 403 ~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~i~~v~~~P~~~~~r~~~ 482 (961)
T PRK13804 403 NKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAIDKTRFVPAAGQNRLYN 482 (961)
T ss_pred hHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHHHhccEEECHHHHHHHHH
Confidence 99999999999865 899999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHccCCceeeecccccCceecEEEeCCc-eeechhhhhhhhcccCcCccccccc
Q psy17125 1204 QIAQRPYWCISRQRVWGVPIPVFYDGDT-IIVNEANIKHFCTLIDEHGPDFWWS 1256 (1281)
Q Consensus 1204 ~~~~~~dWciSRqr~wG~~iP~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~Wf~ 1256 (1281)
||++|+||||||||+||||||+|||+++ .+++++.+.++++.++..|.|.||+
T Consensus 483 ~i~~~~DWcISRQR~WG~PIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~ 536 (961)
T PRK13804 483 MIEDRPDWVISRQRAWGVPIPIFVAEDGEILMDEEVNARIADAFEEEGADAWFA 536 (961)
T ss_pred HHhcCccceeeeeccCCceeeEEEcCCCCEeccHHHHHHHHHHHHhcCCccccc
Confidence 9999999999999999999999999653 5555665555443333333333333
No 59
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.5e-35 Score=357.70 Aligned_cols=156 Identities=22% Similarity=0.322 Sum_probs=138.8
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcc
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNV 845 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~ 845 (1281)
.|.|+|.+|+|+++.|....++.+.++.+ .||.++++|+.+++.+|+|||||+||+|+|.++++
T Consensus 219 ~~~Dih~gG~DlifpHh~neiaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~--------------- 282 (463)
T PRK00260 219 ETFDIHGGGADLIFPHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLK--------------- 282 (463)
T ss_pred CCcceecCccccCCCchHhHHHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHH---------------
Confidence 47899999999999999999999988888 79999999977778999999999999999999999
Q ss_pred cccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHH
Q psy17125 846 ISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVY 925 (1281)
Q Consensus 846 ~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~ 925 (1281)
+||+|++||++++.. ..++++|+.+.+..+.+++++++|+++++.. ...|.|
T Consensus 283 --------------~~~~d~lR~~ll~~~-~~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~-------------~~~d~~ 334 (463)
T PRK00260 283 --------------KYDPEVLRFFLLSAH-YRSPLNFSEEALEQAKKALERLYNALAETAL-------------GEDDEA 334 (463)
T ss_pred --------------HcCchHhHHHHHhCC-CCCCCccCHHHHHHHHHHHHHHHHHHHHhhh-------------ccchhh
Confidence 999999999999855 4889999999999999999999999998741 124678
Q ss_pred HHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHhhhhHHHH
Q psy17125 926 MLKRLCEFQNTMDTLYG-EFQYARASRVLLNFVVNELSAFYFT 967 (1281)
Q Consensus 926 il~~l~~~~~~v~~~~e-~~~~~~ai~~i~~f~~~~l~~~Yle 967 (1281)
+.+++..+++++.++|+ +|+++.|+..+++|+ +.+ +.|++
T Consensus 335 ~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv-~~~-n~~~~ 375 (463)
T PRK00260 335 LLAELEEFKERFIEAMDDDFNTPEALAVLFELA-REI-NRALE 375 (463)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHH-HHHhh
Confidence 88999999999999995 999999999999998 554 55554
No 60
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-36 Score=394.76 Aligned_cols=213 Identities=27% Similarity=0.392 Sum_probs=169.0
Q ss_pred hheeeeeccccccccc---ccceeeeeeehhcccccCcccccchhhhhccCCCCCCCc-----Cccccceec--cCC---
Q psy17125 1040 AKRILYCDSINGEARL---SGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTF-----SSFCHFKVY--HHL--- 1106 (1281)
Q Consensus 1040 ~kd~~y~~~vngk~R~---s~q~~l~~~~~~~~~~~~pilp~~aee~~~~~~~~~gt~-----~~~~d~~~~--~~~--- 1106 (1281)
..+.-.++..+++ |+ .+..+.+|+. ..-+|+++++ ++.+.+|+|.+ |+++||+++ |+|
T Consensus 224 ~~~~avaV~P~d~-ry~~l~g~~~~~P~~-------~~~ipii~~~-~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~ 294 (874)
T PRK05729 224 LGDTAVAVNPEDE-RYKHLIGKTVILPLV-------GREIPIIADE-YVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMI 294 (874)
T ss_pred hcCeeEeECCCcc-HHHHhcCCEEECCCC-------CCeeeEecCc-cCCCCCCCcceEecCCCCHHHHHHHHHcCCCcc
Confidence 3444444444443 33 3445555553 3334444554 44444444443 999999887 776
Q ss_pred CccCCCcccCCCCCCCCCCCchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcccceecccccccHHHHHH
Q psy17125 1107 NLITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALA 1185 (1281)
Q Consensus 1107 ~~i~~~G~~~~~~~~~~~g~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~ 1185 (1281)
++||++|+|++++| .|+||++++||++++..|.+.|++ +.|++.|+||+|||||+|||+++++|||+++++++++|++
T Consensus 295 ~~i~~~G~~~~~~~-~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~ 373 (874)
T PRK05729 295 NIMDEDGTINENPG-EYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALE 373 (874)
T ss_pred cccCCCCeEcCCCc-ccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHH
Confidence 57999999999987 599999999999999999999986 8999999999999999999999999999999999999999
Q ss_pred hhc--CceeeccccHHHHHHHHccCCceeeecccccCceecEEEeCC-ceeechhhhhhhh---cccCcCcccccccCCc
Q psy17125 1186 CLE--GVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPVFYDGD-TIIVNEANIKHFC---TLIDEHGPDFWWSLPV 1259 (1281)
Q Consensus 1186 ~~~--~~~~~P~~~~~~~~~~~~~~~dWciSRqr~wG~~iP~~~~~~-~~~~~~~~~~~~~---~~~~~~~~d~Wf~~~~ 1259 (1281)
+++ +++|+|+++++++.+||++++|||||||||||||||+|||.+ ..+|..+..+... -.+++|++||||||++
T Consensus 374 ~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~v~~~~~~~~~~~~~~~~~DvlDtWfsS~l 453 (874)
T PRK05729 374 AVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDEDGEVYVGREEPEAREKALLTQDEDVLDTWFSSAL 453 (874)
T ss_pred HHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCCCcEEeCCcccccccccCeEeCCceecceecCCc
Confidence 995 699999999999999999999999999999999999999965 4555444332111 2368999999999987
Q ss_pred ccc
Q psy17125 1260 EQL 1262 (1281)
Q Consensus 1260 ~~~ 1262 (1281)
..+
T Consensus 454 ~~~ 456 (874)
T PRK05729 454 WPF 456 (874)
T ss_pred cHH
Confidence 654
No 61
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=2e-36 Score=396.01 Aligned_cols=215 Identities=20% Similarity=0.305 Sum_probs=165.4
Q ss_pred hheeeeecccccc--cccccceeeeeeehhcccccCcccccchhhhhccCCCCCCCc-----Cccccceec--cCC---C
Q psy17125 1040 AKRILYCDSINGE--ARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTF-----SSFCHFKVY--HHL---N 1107 (1281)
Q Consensus 1040 ~kd~~y~~~vngk--~R~s~q~~l~~~~~~~~~~~~pilp~~aee~~~~~~~~~gt~-----~~~~d~~~~--~~~---~ 1107 (1281)
-.+.-.++..+.. ...-+.++.+|+. .....||++ ++-++.+.+|+|.+ |+++||+++ |+| +
T Consensus 266 ~g~~avav~P~d~~y~~l~G~~~~~Pl~---~~~~ipii~---~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~ 339 (995)
T PTZ00419 266 LGDVAVAVHPKDERYKKLHGKELIHPFI---PDRKIPIIA---DDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFIN 339 (995)
T ss_pred hhCeEEEECCCCcHHHHhcCCEEECCcc---CCCEEEEEe---CCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeee
Confidence 3444444444443 1234555555551 123345544 43234444444443 999999987 666 5
Q ss_pred ccCCCcccCCCCCCCCCCCchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcccceecccccccHHHHHHh
Q psy17125 1108 LITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALAC 1186 (1281)
Q Consensus 1108 ~i~~~G~~~~~~~~~~~g~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~ 1186 (1281)
+||++|+|++++| .|.||++++||++|+..|.+.|++ +.++|+|+||||||||+|||+++++||||+|++++++|+++
T Consensus 340 ~i~~~G~~~~~~~-~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~ 418 (995)
T PTZ00419 340 IFTLDGKINENGG-EFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEA 418 (995)
T ss_pred eeCCCceEcCCCc-ccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHH
Confidence 6999999998877 499999999999999999999976 89999999999999999999999999999999999999999
Q ss_pred hc--CceeeccccHHHHHHHHccCCceeeecccccCceecEEEeCCc-----------eeec--hhhhh-hh--------
Q psy17125 1187 LE--GVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPVFYDGDT-----------IIVN--EANIK-HF-------- 1242 (1281)
Q Consensus 1187 ~~--~~~~~P~~~~~~~~~~~~~~~dWciSRqr~wG~~iP~~~~~~~-----------~~~~--~~~~~-~~-------- 1242 (1281)
++ +++|+|+++++++.+||++++|||||||||||||||+|||.++ .++. .+... ..
T Consensus 419 v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (995)
T PTZ00419 419 VRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSE 498 (995)
T ss_pred hhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCcc
Confidence 97 7999999999999999999999999999999999999999642 2222 11111 10
Q ss_pred h---cccCcCcccccccCCccc
Q psy17125 1243 C---TLIDEHGPDFWWSLPVEQ 1261 (1281)
Q Consensus 1243 ~---~~~~~~~~d~Wf~~~~~~ 1261 (1281)
+ -.+++|++||||+|+...
T Consensus 499 ~~~~~~~~~DVlDtWFdS~l~p 520 (995)
T PTZ00419 499 EDFELEQDEDVLDTWFSSGLFP 520 (995)
T ss_pred ccCCeEECCceEEEEEeCCHHH
Confidence 0 125889999999998764
No 62
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-36 Score=393.64 Aligned_cols=200 Identities=26% Similarity=0.392 Sum_probs=163.7
Q ss_pred cccceeeeeeehhcccccCcccccchhhhhccCCCCCCCc-----Cccccceec--cCC---CccCCCcccCCCCCCCCC
Q psy17125 1055 LSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTF-----SSFCHFKVY--HHL---NLITNQGKYSPDAGPGLE 1124 (1281)
Q Consensus 1055 ~s~q~~l~~~~~~~~~~~~pilp~~aee~~~~~~~~~gt~-----~~~~d~~~~--~~~---~~i~~~G~~~~~~~~~~~ 1124 (1281)
..+..+.+|+. ... +|++++.+++.+.+|+|.+ |+++||+++ |+| ++||++|+|++++| .|.
T Consensus 255 L~G~~~~~Pl~----~~~---ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~-~~~ 326 (1052)
T PRK14900 255 LHGKKVRHPIT----GRT---FPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAG-PLA 326 (1052)
T ss_pred hcCCEEECCCC----CCe---eEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCc-ccC
Confidence 34555555553 223 4445666555554555553 999999886 666 56899999998876 599
Q ss_pred CCchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcccceecccccccHHHHHHhhc--CceeeccccHHHH
Q psy17125 1125 GLNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLE--GVNFVPESAKKSL 1201 (1281)
Q Consensus 1125 g~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~--~~~~~P~~~~~~~ 1201 (1281)
||++++||++|+.+|.+.|++ +.|+|+|+|||||||++|||+++|+||||+++.++++++++++ +++|+|+++++++
T Consensus 327 Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~ 406 (1052)
T PRK14900 327 GLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTY 406 (1052)
T ss_pred CcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHH
Confidence 999999999999999999986 7999999999999999999999999999999999999999996 4999999999999
Q ss_pred HHHHccCCceeeecccccCceecEEEeCCc-eeechhhhhhh--h----cccCcCcccccccCCcccc
Q psy17125 1202 RDQIAQRPYWCISRQRVWGVPIPVFYDGDT-IIVNEANIKHF--C----TLIDEHGPDFWWSLPVEQL 1262 (1281)
Q Consensus 1202 ~~~~~~~~dWciSRqr~wG~~iP~~~~~~~-~~~~~~~~~~~--~----~~~~~~~~d~Wf~~~~~~~ 1262 (1281)
.+||++++|||||||||||||||+|||+++ +++..+....+ | -.+++|++|+||+|.+..+
T Consensus 407 ~~wl~~l~DW~ISRqr~WG~PIP~w~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~ 474 (1052)
T PRK14900 407 MAWMRNIHDWCISRQLWWGHQIPAWYCPDGHVTVARETPEACSTCGKAELRQDEDVLDTWFSSGLWPF 474 (1052)
T ss_pred HHHHhcCccceEEeecCCCceeCeEEcCCCcEEecccccccccccCccceecCCceEEEEEcCChHHH
Confidence 999999999999999999999999999754 55544433221 1 1368999999999987654
No 63
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=2.8e-35 Score=381.77 Aligned_cols=199 Identities=27% Similarity=0.450 Sum_probs=162.2
Q ss_pred ccceeeeeeehhcccccCcccccchhhhhccCCCCCCCc-----Cccccceec--cCC---CccCCCcccCCCCCCCCCC
Q psy17125 1056 SGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTF-----SSFCHFKVY--HHL---NLITNQGKYSPDAGPGLEG 1125 (1281)
Q Consensus 1056 s~q~~l~~~~~~~~~~~~pilp~~aee~~~~~~~~~gt~-----~~~~d~~~~--~~~---~~i~~~G~~~~~~~~~~~g 1125 (1281)
-+..+.+|++ ....||++ ++ ++.+.+|+|.+ |+++||+++ |+| ++||++|++++++|. |+|
T Consensus 240 ~g~~~~~P~~----~~~ipii~---~~-~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~-~~G 310 (861)
T TIGR00422 240 IGKKVILPLT----GRKIPIIA---DE-YVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGK-YQG 310 (861)
T ss_pred cCCEEEcCCC----CCcceeee---cC-CCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcc-cCC
Confidence 4455555554 33455555 43 33343344432 899999887 666 579999999999875 999
Q ss_pred CchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcccceecccccccHHHHHHhhc--CceeeccccHHHHH
Q psy17125 1126 LNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLE--GVNFVPESAKKSLR 1202 (1281)
Q Consensus 1126 ~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~--~~~~~P~~~~~~~~ 1202 (1281)
|++++||++++.+|.+.|++ +.++++|+||+|||||+|||+++++|||+++++++++++++++ +++|+|+++++++.
T Consensus 311 ~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~ 390 (861)
T TIGR00422 311 LTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYL 390 (861)
T ss_pred cCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHH
Confidence 99999999999999999976 8999999999999999999999999999999999999999997 79999999999999
Q ss_pred HHHccCCceeeecccccCceecEEEeCCc--eeechhhhhhhh---------cccCcCcccccccCCccccc
Q psy17125 1203 DQIAQRPYWCISRQRVWGVPIPVFYDGDT--IIVNEANIKHFC---------TLIDEHGPDFWWSLPVEQLL 1263 (1281)
Q Consensus 1203 ~~~~~~~dWciSRqr~wG~~iP~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~d~Wf~~~~~~~~ 1263 (1281)
+||++++|||||||||||||||+|||.++ +++..+..+... -.+++||+||||+|+...+.
T Consensus 391 ~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s 462 (861)
T TIGR00422 391 NWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFS 462 (861)
T ss_pred HHHhccccceeeeecccCCcceEEEECCCCcEEeccchHHhhhhhccCCcccEEECCCcccceeccchHHHH
Confidence 99999999999999999999999999653 455333222221 13689999999999876643
No 64
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=1.5e-35 Score=369.32 Aligned_cols=197 Identities=31% Similarity=0.606 Sum_probs=155.1
Q ss_pred ccceeeeeeehhcccccCcccccchhhhhccCCCCCCCc-------Cccccceec--cCC---CccCCCcccCCCCCCCC
Q psy17125 1056 SGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTF-------SSFCHFKVY--HHL---NLITNQGKYSPDAGPGL 1123 (1281)
Q Consensus 1056 s~q~~l~~~~~~~~~~~~pilp~~aee~~~~~~~~~gt~-------~~~~d~~~~--~~~---~~i~~~G~~~~~~~~~~ 1123 (1281)
.++++.+|++ ....|+++.. ++..++||| |++.||+++ |++ ++||++|++++++++ |
T Consensus 260 ~g~~~~~P~~----~~~~~vi~~~------~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~-~ 328 (601)
T PF00133_consen 260 VGLKYIHPLT----GREVPVIPDD------FVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGK-F 328 (601)
T ss_dssp TTSEEE-TTS----SSSEEEEEET------TS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCST-T
T ss_pred cCcEeccccc----cceeEEEccc------ccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCceEeecccc-c
Confidence 3445555553 4456777732 344566665 888899887 544 679999999999874 9
Q ss_pred CCCchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcccceecccccccHHHHHHhhcCceeeccccHHHHH
Q psy17125 1124 EGLNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLR 1202 (1281)
Q Consensus 1124 ~g~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 1202 (1281)
.||.|++||++++++|.+.|++ +.++++|+||||||||+||++++++||||++++++++|++++++|+|+|+++++++.
T Consensus 329 ~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~~~~~~~ 408 (601)
T PF00133_consen 329 KGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKFYPESYRKRFE 408 (601)
T ss_dssp TTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEESSSTCHHHHH
T ss_pred CCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccceEEcccchhhhh
Confidence 9999999999999999999975 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCceeeecccccCceecEEEeCCc--eeechhhhhhhh--------------------------cccCcCccccc
Q psy17125 1203 DQIAQRPYWCISRQRVWGVPIPVFYDGDT--IIVNEANIKHFC--------------------------TLIDEHGPDFW 1254 (1281)
Q Consensus 1203 ~~~~~~~dWciSRqr~wG~~iP~~~~~~~--~~~~~~~~~~~~--------------------------~~~~~~~~d~W 1254 (1281)
+||++++||||||||+||||||+|+|+++ ..+..+....+. -..++|++|+|
T Consensus 409 ~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~W 488 (601)
T PF00133_consen 409 NWIDNLRDWCISRQRYWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTW 488 (601)
T ss_dssp HHHHT--EEE-EESSSSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HH
T ss_pred hhccccccchhhccCCCCccceeeecccCcccccccccccccccccccccccccccccccccccccccceEEeeeecccc
Confidence 99999999999999999999999999774 333222222111 01478999999
Q ss_pred ccCCccccc
Q psy17125 1255 WSLPVEQLL 1263 (1281)
Q Consensus 1255 f~~~~~~~~ 1263 (1281)
|+|+...+.
T Consensus 489 fdSg~~~~~ 497 (601)
T PF00133_consen 489 FDSGLWPFA 497 (601)
T ss_dssp HHHCTCHHH
T ss_pred ccccCCccc
Confidence 999876543
No 65
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=6.3e-35 Score=377.76 Aligned_cols=195 Identities=24% Similarity=0.362 Sum_probs=154.3
Q ss_pred ccceeeeeeehhcccccCcccccchhhhhccCCCCCCCc-----Cccccceec--cCC---CccCCCcccCCCCCCCCCC
Q psy17125 1056 SGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTF-----SSFCHFKVY--HHL---NLITNQGKYSPDAGPGLEG 1125 (1281)
Q Consensus 1056 s~q~~l~~~~~~~~~~~~pilp~~aee~~~~~~~~~gt~-----~~~~d~~~~--~~~---~~i~~~G~~~~~~~~~~~g 1125 (1281)
-++.+++|+. .....|| ++++ ++.+.+|+|.+ |+++||+++ |+| ++||++|+|++.+ |
T Consensus 295 ~g~~~~~Pl~---~~~~ipi---i~~~-~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~-----g 362 (958)
T PLN02943 295 IGKMAIVPMT---YGRHVPI---IADR-YVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVA-----G 362 (958)
T ss_pred cCCEEECCCc---CCCeeeE---EecC-cccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccC-----C
Confidence 3445555552 0223444 4454 34444444443 999999987 676 4689999999754 4
Q ss_pred CchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcccceecccccccHHHHHHhhc--CceeeccccHHHHH
Q psy17125 1126 LNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLE--GVNFVPESAKKSLR 1202 (1281)
Q Consensus 1126 ~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~--~~~~~P~~~~~~~~ 1202 (1281)
+.+++||++|+.+|.+.|++ +.|+++|+||+|||||+|||+++++|||+++++++++++++++ +++|+|+++++++.
T Consensus 363 ~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~ 442 (958)
T PLN02943 363 LYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYN 442 (958)
T ss_pred ccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHH
Confidence 55999999999999999976 8999999999999999999999999999999999999999996 69999999999999
Q ss_pred HHHccCCceeeecccccCceecEEEeC--Cc---eeechhhhhhhh-----------cccCcCcccccccCCcccc
Q psy17125 1203 DQIAQRPYWCISRQRVWGVPIPVFYDG--DT---IIVNEANIKHFC-----------TLIDEHGPDFWWSLPVEQL 1262 (1281)
Q Consensus 1203 ~~~~~~~dWciSRqr~wG~~iP~~~~~--~~---~~~~~~~~~~~~-----------~~~~~~~~d~Wf~~~~~~~ 1262 (1281)
+||++++|||||||||||||||+|||+ ++ .+++.+..+.+. -.+++|++||||+|++..+
T Consensus 443 ~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~ 518 (958)
T PLN02943 443 HWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPF 518 (958)
T ss_pred HHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchH
Confidence 999999999999999999999999972 32 344433322211 1268999999999997753
No 66
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=6.6e-32 Score=334.17 Aligned_cols=169 Identities=18% Similarity=0.209 Sum_probs=145.5
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEee-ceeeccCCCcccccCCCccChhhhhcccccCcccccccCc
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLH-GFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGN 844 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~h-G~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn 844 (1281)
.|.|+|.+|.|+++.|...-+..+.+++++.||.+.++| |||. .+|+|||||+||+|+|.++++
T Consensus 267 ~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~-i~G~KMSKSLGNfItp~dlLe-------------- 331 (651)
T PTZ00399 267 DPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLH-IKGLKMSKSLKNFITIRQALS-------------- 331 (651)
T ss_pred CcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEE-eccchhhhcCCCcccHHHHHH--------------
Confidence 589999999999999999999999999998899999999 9976 899999999999999999999
Q ss_pred ccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHH
Q psy17125 845 VISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDV 924 (1281)
Q Consensus 845 ~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~ 924 (1281)
+||+|++||||++. ...+|++|+.+.+..+.+..+++.|.+.++...+.+............|+
T Consensus 332 ---------------kygaDaLR~~lLs~-~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~~~~~~~~~~~~~d~ 395 (651)
T PTZ00399 332 ---------------KYTARQIRLLFLLH-KWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRESELTSPQKWTQHDF 395 (651)
T ss_pred ---------------HcChHHHHHHHHhc-CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCHHHH
Confidence 99999999999977 55899999999999988888889998888765443221111112346788
Q ss_pred HHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHhhhhHHHH
Q psy17125 925 YMLKRLCEFQNTMDTLY-GEFQYARASRVLLNFVVNELSAFYFT 967 (1281)
Q Consensus 925 ~il~~l~~~~~~v~~~~-e~~~~~~ai~~i~~f~~~~l~~~Yle 967 (1281)
+++..+..+...+.++| ++|+++.|+..+++++ + .+|.|++
T Consensus 396 ~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv-~-~~N~yi~ 437 (651)
T PTZ00399 396 ELNELFEETKSAVHAALLDNFDTPEALQALQKLI-S-ATNTYLN 437 (651)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-H-HHHHHHh
Confidence 99999999999999999 7899999999999999 4 4688875
No 67
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=1.1e-33 Score=367.47 Aligned_cols=169 Identities=31% Similarity=0.554 Sum_probs=143.2
Q ss_pred Cccccceec--cCC---CccCCCcccCCCCCC------CCCCCchhccchHHHHhhccCCce-eeeeeeeccCccccCCC
Q psy17125 1095 SSFCHFKVY--HHL---NLITNQGKYSPDAGP------GLEGLNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKK 1162 (1281)
Q Consensus 1095 ~~~~d~~~~--~~~---~~i~~~G~~~~~~~~------~~~g~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~ 1162 (1281)
|++.||+++ |+| ++||++|+|+++++. .|+|+++++||+++++.|.+.|+| +.|++.|+||||||||+
T Consensus 335 h~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~ 414 (861)
T TIGR00392 335 HGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKT 414 (861)
T ss_pred CCHHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCC
Confidence 888899887 555 458999999876553 489999999999999999999965 89999999999999999
Q ss_pred cEEEcccceecccccccHHHHHHhhcCceeeccccHHHHHHHHccCCceeeecccccCceecEEEeCCc-eeechhhhhh
Q psy17125 1163 PVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPVFYDGDT-IIVNEANIKH 1241 (1281)
Q Consensus 1163 pv~~~~~~qwf~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~dWciSRqr~wG~~iP~~~~~~~-~~~~~~~~~~ 1241 (1281)
|||+++++||||+++++++++++++++++|+|+++++++.+||++++||||||||+||||||+|+|+++ ..++..++++
T Consensus 415 ~v~~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~ 494 (861)
T TIGR00392 415 PVIYRATEQWFIKTKDIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEE 494 (861)
T ss_pred EEEEecCccccEEcHHHHHHHHHHhCCcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeEEEECCCCCCcCchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999753 1122222221
Q ss_pred hh------------------------------c--ccCcCcccccccCCccccc
Q psy17125 1242 FC------------------------------T--LIDEHGPDFWWSLPVEQLL 1263 (1281)
Q Consensus 1242 ~~------------------------------~--~~~~~~~d~Wf~~~~~~~~ 1263 (1281)
+. . ..++|++|+||+|.+..+.
T Consensus 495 ~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~ 548 (861)
T TIGR00392 495 LIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYA 548 (861)
T ss_pred HHHHHHHhCCccccccchhhhcCchhccCCCCcceEEccccccchhhcCcchHH
Confidence 11 1 2478999999999876543
No 68
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=7.4e-32 Score=324.51 Aligned_cols=128 Identities=21% Similarity=0.163 Sum_probs=112.6
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHH
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKN 95 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~ 95 (1281)
+++.++|++.| ||+|.+||||+|+++..|+++||+|++||+|.+++|+|++|.+|..+|.+++ ++| ++
T Consensus 19 ~~~v~~yvcgp--tvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g---~~~-------~e 86 (465)
T TIGR00435 19 QGKVKMYVCGP--TVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENG---ESV-------YE 86 (465)
T ss_pred CCcceEEEecC--ccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcC---CCH-------HH
Confidence 35667777754 7778999999999999999999999999999999999999999999999886 888 55
Q ss_pred HHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeC-cceeecCCc
Q psy17125 96 FALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDL-KPVYWSPSS 159 (1281)
Q Consensus 96 ~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~-~~v~w~p~~ 159 (1281)
+++.+++.+++++++|||++|+- ..+++ .|...+.+++.+|.++|++|... +.|+||+.+
T Consensus 87 ~a~~~~~~f~~dl~~LgI~~d~~--~~raT--~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~ 147 (465)
T TIGR00435 87 VSERFIEAYFEDMKALNVLPPDL--EPRAT--EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSK 147 (465)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcC--Ccccc--ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccc
Confidence 69999999999999999999843 11233 78999999999999999999998 999999763
No 69
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=362.97 Aligned_cols=198 Identities=27% Similarity=0.441 Sum_probs=160.9
Q ss_pred cccceeeeeeehhcccccCcccccchhhhhccCCCCCCCc-----Cccccceec--cCC---CccCCCcccCCCCCCCCC
Q psy17125 1055 LSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTF-----SSFCHFKVY--HHL---NLITNQGKYSPDAGPGLE 1124 (1281)
Q Consensus 1055 ~s~q~~l~~~~~~~~~~~~pilp~~aee~~~~~~~~~gt~-----~~~~d~~~~--~~~---~~i~~~G~~~~~~~~~~~ 1124 (1281)
..+..+.+|++ ....||++ ++ ++.+..|+|++ ||++||+++ |+| ++||++|+|++++|+ |+
T Consensus 239 l~g~~~~~P~~----~~~ipii~---~~-~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~-~~ 309 (800)
T PRK13208 239 LVGKTAIVPLF----GVEVPILA---DP-LVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGK-LA 309 (800)
T ss_pred hcCCEEEcCCC----CCcceEEC---CC-ccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcc-cC
Confidence 45566666664 44566666 33 34454455543 889999876 666 569999999998875 99
Q ss_pred CCchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcccceecccccccHHHHHHhhcCceeeccccHHHHHH
Q psy17125 1125 GLNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRD 1203 (1281)
Q Consensus 1125 g~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~ 1203 (1281)
||++++||++++..|.+.|++ +.+++.|+||+|||||+|||+++++|||++++++++++++++++++|+|+++++++.+
T Consensus 310 G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~~~~P~~~~~~~~~ 389 (800)
T PRK13208 310 GLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGKEINWYPEHMRVRLEN 389 (800)
T ss_pred CCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCcEEECHHHHHHHHH
Confidence 999999999999999999975 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCC-ceeeecccccCceecEEEeCCc--eeech-hhh--h-----------hhh----cccCcCcccccccCCccc
Q psy17125 1204 QIAQRP-YWCISRQRVWGVPIPVFYDGDT--IIVNE-ANI--K-----------HFC----TLIDEHGPDFWWSLPVEQ 1261 (1281)
Q Consensus 1204 ~~~~~~-dWciSRqr~wG~~iP~~~~~~~--~~~~~-~~~--~-----------~~~----~~~~~~~~d~Wf~~~~~~ 1261 (1281)
||++++ ||||||||+||||||+|||+++ .++.+ +.+ + ..| -.+++|++|+||+|+...
T Consensus 390 ~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~ 468 (800)
T PRK13208 390 WIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITP 468 (800)
T ss_pred HHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhccCchhhccccccccccCCcCEEecCCEEEEEEeCCchH
Confidence 999988 9999999999999999999764 33321 111 0 001 125789999999998643
No 70
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=4.9e-31 Score=305.42 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=112.0
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHH
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFA 97 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~ 97 (1281)
+-++|++.|.|| +++||||+|+++..|+++||+|++||+|.+++|+|+||.+|..+|++++ +++ ++++
T Consensus 9 ~v~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G---~~~-------~e~a 76 (384)
T PRK12418 9 TATMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDG---VDW-------RDLA 76 (384)
T ss_pred eeEEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcC---CCH-------HHHH
Confidence 447888887777 9999999999999999999999999999999999999999999999987 888 5669
Q ss_pred HHHHHHHHHHHHHcCc-eeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCc----ceeecCC
Q psy17125 98 LETINTQKAEFESWGV-LADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLK----PVYWSPS 158 (1281)
Q Consensus 98 ~~~~~~~~~~l~~lgi-~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~----~v~w~p~ 158 (1281)
+++.+.+++++++||| .+| .+.+|++. .+.++.++++|.++|++|+... .|||+..
T Consensus 77 ~~~~~~f~~d~~~Lni~~~~---~~~raTe~--i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~ 137 (384)
T PRK12418 77 EREIALFREDMEALRVLPPR---DYVGAVES--IPEVVELVEKLLASGAAYVVDDEEYPDVYFSVD 137 (384)
T ss_pred HHHHHHHHHHHHHhCCCCCC---ccccCCCC--HHHHHHHHHHHHHCCCEEEeCCCCCccEEEecC
Confidence 9999999999999997 666 57777764 8999999999999999999988 7888865
No 71
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.97 E-value=3.4e-31 Score=307.64 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=110.6
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHH
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNF 96 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~ 96 (1281)
++-++|++.|.|| +.+||||+|+++..|+++||+|+.||+|.|++|+|+||.+|..+|++++ +++ +++
T Consensus 35 ~~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g---~t~-------~el 102 (411)
T TIGR03447 35 PEAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDG---VDW-------REL 102 (411)
T ss_pred CcceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcC---CCH-------HHH
Confidence 3456888888888 8999999999999999999999999999999999999999999999887 888 556
Q ss_pred HHHHHHHHHHHHHHcCce-eccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCc----ceeecCC
Q psy17125 97 ALETINTQKAEFESWGVL-ADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLK----PVYWSPS 158 (1281)
Q Consensus 97 ~~~~~~~~~~~l~~lgi~-~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~----~v~w~p~ 158 (1281)
++++.+.+++++++|||. +| .+.+|++. .+.++.++++|.++|++|.... .|||+.+
T Consensus 103 a~~y~~~f~~d~~~Lni~~~d---~~~RaTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~ 164 (411)
T TIGR03447 103 GTSQIDLFREDMEALRVLPPR---DYIGAVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIE 164 (411)
T ss_pred HHHHHHHHHHHHHHcCCCCCC---cccCCCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEecc
Confidence 999999999999999987 55 46667665 7999999999999999998876 6877754
No 72
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=4.8e-29 Score=296.80 Aligned_cols=122 Identities=16% Similarity=0.071 Sum_probs=110.4
Q ss_pred EEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEec----------ccCCCCchHHHHHHHhcccCCCHHHHH
Q psy17125 21 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVP----------GWDCHGLPIELKAITSKDKLLSPLDIR 90 (1281)
Q Consensus 21 f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~----------G~D~~G~pie~~a~~~~~~~~~~~e~~ 90 (1281)
.|++ =|+|++.+||||+|+++..|+++||+|+.||+|.|++ |.|+||.+|..+|.+++ +++
T Consensus 26 mYvC--GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g---~~~---- 96 (490)
T PRK14536 26 LYGC--GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHG---KSV---- 96 (490)
T ss_pred EEee--CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcC---CCH----
Confidence 4444 4789999999999999999999999999999999997 88888999999998886 788
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCC
Q psy17125 91 KKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPS 158 (1281)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~ 158 (1281)
+++++++++.+++++++|||..+ .+.|..++|...++.++++|.++|++|.+.+.||||+.
T Consensus 97 ---~e~a~~~~~~f~~d~~~Lni~~~----~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~ 157 (490)
T PRK14536 97 ---LEIAAHYTAAFFRDTARLNIERP----SIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIR 157 (490)
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCCC----ceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCC
Confidence 56699999999999999999987 34477799999999999999999999999999999984
No 73
>PLN02946 cysteine-tRNA ligase
Probab=99.97 E-value=3.8e-29 Score=300.17 Aligned_cols=123 Identities=17% Similarity=0.122 Sum_probs=113.7
Q ss_pred cEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q psy17125 20 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALE 99 (1281)
Q Consensus 20 ~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~ 99 (1281)
+.|++ =|+|+|.+||||+|+++..|+++||+|+.||+|.|++|+|++|.+|..+|.+++ +++ .+++++
T Consensus 82 ~~Y~C--GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g---~~~-------~ela~~ 149 (557)
T PLN02946 82 GMYVC--GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELG---EDP-------ISLSRR 149 (557)
T ss_pred eEEEe--CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcC---CCH-------HHHHHH
Confidence 45666 378899999999999999999999999999999999999999999999999886 788 566999
Q ss_pred HHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCC
Q psy17125 100 TINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPS 158 (1281)
Q Consensus 100 ~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~ 158 (1281)
+++.+.+++++|||. + .++.|...+|...++.++++|.++|++|.+.+.||||..
T Consensus 150 y~~~f~~d~~~LnI~-~---p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~ 204 (557)
T PLN02946 150 YCEEFLSDMAYLHCL-P---PSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVD 204 (557)
T ss_pred HHHHHHHHHHHCCCC-C---CCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecC
Confidence 999999999999998 4 588899999999999999999999999999999999975
No 74
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.96 E-value=2.7e-28 Score=292.91 Aligned_cols=118 Identities=17% Similarity=0.133 Sum_probs=108.9
Q ss_pred CCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy17125 27 PPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKA 106 (1281)
Q Consensus 27 pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 106 (1281)
=|+|.+.+||||+|+++..|+++||+|+.||+|.+++|+|++|.+|..+|.+++ +++ +++++++++.+.+
T Consensus 255 GPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G---~sp-------~ela~~y~~~F~~ 324 (699)
T PRK14535 255 GMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENG---ETI-------GELTARFIQAMHE 324 (699)
T ss_pred CCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcC---CCH-------HHHHHHHHHHHHH
Confidence 478889999999999999999999999999999999999999999999999886 888 5669999999999
Q ss_pred HHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee-CcceeecCC
Q psy17125 107 EFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD-LKPVYWSPS 158 (1281)
Q Consensus 107 ~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~v~w~p~ 158 (1281)
++++|||..+ .+.|...+|...++.++++|.++|++|++ .+.||||..
T Consensus 325 d~~~LnI~~p----~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~ 373 (699)
T PRK14535 325 DADALGVLRP----DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVR 373 (699)
T ss_pred HHHHcCCCCC----cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecc
Confidence 9999999998 45788889999999999999999999987 458999975
No 75
>KOG0434|consensus
Probab=99.95 E-value=1e-29 Score=292.61 Aligned_cols=141 Identities=24% Similarity=0.502 Sum_probs=127.1
Q ss_pred CCCCCcCccc-------cceec---------cC-CCccCCCcccCCCCCCCCCCCchhccchHHHHhhccCC-ceeeeee
Q psy17125 1089 SRQGTFSSFC-------HFKVY---------HH-LNLITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPD-VLWTENY 1150 (1281)
Q Consensus 1089 ~~~gt~~~~~-------d~~~~---------~~-~~~i~~~G~~~~~~~~~~~g~~~~~~~~~~v~~l~~~~-~l~~e~~ 1150 (1281)
.+.|||..|| ||+++ +. .|+||++|+||.+.. +|+|..+.+|.+.||..|.+.| |++...+
T Consensus 316 ~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~-dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i 394 (1070)
T KOG0434|consen 316 EDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVT-DFAGQYVKDADKLIIRSLKASGRLVKASQI 394 (1070)
T ss_pred cCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccc-cccceeeccchHHHHHHHHhcCceeeeeee
Confidence 4566765555 77554 11 278999999999975 6999999999999999999998 6699999
Q ss_pred eeccCccccCCCcEEEcccceecccccccHHHHHHhhcCceeeccccH-HHHHHHHccCCceeeecccccCceecEEEeC
Q psy17125 1151 QHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAK-KSLRDQIAQRPYWCISRQRVWGVPIPVFYDG 1229 (1281)
Q Consensus 1151 ~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~~~~~P~~~~-~~~~~~~~~~~dWciSRqr~wG~~iP~~~~~ 1229 (1281)
+||||+||||.||++||+.|.||++++.+.+++++...++.|+|+..+ +|+.|||+|.+||.|||.|+||+|||+|+.+
T Consensus 395 ~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSd 474 (1070)
T KOG0434|consen 395 THSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNMKTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSD 474 (1070)
T ss_pred eeccCceecCCChHHHhhccHhhhhHHHHHHHHHhcccccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEcc
Confidence 999999999999999999999999999999999999999999999998 6999999999999999999999999999976
Q ss_pred C
Q psy17125 1230 D 1230 (1281)
Q Consensus 1230 ~ 1230 (1281)
|
T Consensus 475 D 475 (1070)
T KOG0434|consen 475 D 475 (1070)
T ss_pred C
Confidence 5
No 76
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=2.2e-26 Score=272.61 Aligned_cols=123 Identities=17% Similarity=0.144 Sum_probs=108.0
Q ss_pred EEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEE---------eccc-CCCCchHHHHHHHhcccCCCHHHHHHH
Q psy17125 23 LHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHY---------VPGW-DCHGLPIELKAITSKDKLLSPLDIRKK 92 (1281)
Q Consensus 23 i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~---------~~G~-D~~G~pie~~a~~~~~~~~~~~e~~~~ 92 (1281)
+..-=|+|+..+||||+|+++..|+++||+|++||+|.+ ..|. |+||.+|..+|.+++ +++
T Consensus 24 mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g---~~~------ 94 (481)
T PRK14534 24 VYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERG---LTV------ 94 (481)
T ss_pred EEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcC---CCH------
Confidence 333457888999999999999999999999999999999 5666 444788999999887 788
Q ss_pred HHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCc
Q psy17125 93 AKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSS 159 (1281)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~ 159 (1281)
.++++++++.+++++++|||..| .++.| ..+|...++.++.+|.++|++|.....||||+.+
T Consensus 95 -~e~a~~~~~~f~~d~~~Lni~~~---~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~ 156 (481)
T PRK14534 95 -YEISRFFTEAFFDDCKKLNIVYP---DKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC 156 (481)
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCC---ceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc
Confidence 56699999999999999999998 55555 6899999999999999999999999999999864
No 77
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=1.8e-24 Score=265.34 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=111.0
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHH
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFA 97 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~ 97 (1281)
.+++.|....|||||++||||+|+.+++|+++|++|+.||+|.++.|+|++|.++...+.+.. . ..+.++
T Consensus 110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~---~-------~~~~~~ 179 (507)
T PRK01611 110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLE---L-------LWRKAV 179 (507)
T ss_pred CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHH---H-------HHHHHH
Confidence 357999999999999999999999999999999999999999999999999999998776653 1 236789
Q ss_pred HHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEE-eeCcceee
Q psy17125 98 LETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIY-RDLKPVYW 155 (1281)
Q Consensus 98 ~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy-~~~~~v~w 155 (1281)
+.+++.+++++++|||.+| .++++++..+...+++++.+|.++|++| +.++.+++
T Consensus 180 ~~~~~~~~~~l~~LgI~~D---~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~ 235 (507)
T PRK01611 180 DISLDEIKEDLDRLGVHFD---VWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWV 235 (507)
T ss_pred HHHHHHHHHHHHHcCCeee---EEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEE
Confidence 9999999999999999998 5677888888889999999999999999 66665544
No 78
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.93 E-value=2.8e-25 Score=240.31 Aligned_cols=94 Identities=23% Similarity=0.158 Sum_probs=86.1
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHH
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKN 95 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~ 95 (1281)
+++.++|++.|.|| |++||||+++++++|+++||+||+|++|++++|+|+||+||+.+|++++ ++| ++
T Consensus 18 ~~~~~~y~~gpt~y--~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g---~~p-------~e 85 (213)
T cd00672 18 PGLVTMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEG---LSW-------KE 85 (213)
T ss_pred CCCceEEEeCCccC--CCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcC---CCH-------HH
Confidence 46678999988777 7899999999999999999999999999999999999999999999986 788 67
Q ss_pred HHHHHHHHHHHHHHHcCcee-ccCCCeeec
Q psy17125 96 FALETINTQKAEFESWGVLA-DWEHNCYHT 124 (1281)
Q Consensus 96 ~~~~~~~~~~~~l~~lgi~~-DW~R~~~~T 124 (1281)
+++++.+.+++++++|||+. | .+.+|
T Consensus 86 ~~~~~~~~f~~~~~~l~i~~~d---~~~rt 112 (213)
T cd00672 86 VADYYTKEFFEDMKALNVLPPD---VVPRV 112 (213)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC---cceee
Confidence 79999999999999999998 6 67777
No 79
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2e-24 Score=249.61 Aligned_cols=146 Identities=24% Similarity=0.406 Sum_probs=125.2
Q ss_pred CccceeeccceeeehhhHHHHHHHHhcCCCCCceEEee-ceeeccCCCcccccCCCccChhhhhcccccCcccccccCcc
Q psy17125 767 PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLH-GFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNV 845 (1281)
Q Consensus 767 p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~h-G~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~ 845 (1281)
..|+|.+|.|+++.|...-+..+.+..+..||.+.++| |||. -+|+|||||+||+++..++++
T Consensus 221 ~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~-i~geKMSKSLGNfiti~d~l~--------------- 284 (464)
T COG0215 221 TFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLN-IDGEKMSKSLGNFITVRDLLK--------------- 284 (464)
T ss_pred CcceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceee-ecCcCcccccCCeeEHHHHHh---------------
Confidence 56899999999999999999999999998899999888 6665 899999999999999999999
Q ss_pred cccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHH
Q psy17125 846 ISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVY 925 (1281)
Q Consensus 846 ~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~ 925 (1281)
+|++.++||+|+++.+ .+.++|+++.|+.+.+.+.+|.++++.+.....+.. ..
T Consensus 285 --------------~~~p~~lR~~lls~HY-R~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~------~~----- 338 (464)
T COG0215 285 --------------KYDPEVLRLFLLSSHY-RSPLDFSEELLEEAKKALERLYNALRRLRDLAGDAE------LA----- 338 (464)
T ss_pred --------------hcCHHHHHHHHHHHHh-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhccccc------cc-----
Confidence 9999999999999988 789999999999999999999999998764322211 00
Q ss_pred HHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHH
Q psy17125 926 MLKRLCEFQNTMDTLYG-EFQYARASRVLLNFV 957 (1281)
Q Consensus 926 il~~l~~~~~~v~~~~e-~~~~~~ai~~i~~f~ 957 (1281)
...++..++.++|+ +|++..|+..+.+++
T Consensus 339 ---~~~~~~~~f~~al~DDfnt~~al~~l~~l~ 368 (464)
T COG0215 339 ---DLKEFEARFREALDDDFNTPKALAVLFELA 368 (464)
T ss_pred ---hhHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 34455555667775 799999999999988
No 80
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=7.9e-26 Score=292.51 Aligned_cols=117 Identities=21% Similarity=0.344 Sum_probs=106.9
Q ss_pred CCcccCCCCCCCCCCCchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcc-cceeccccc--ccHHHHHHh
Q psy17125 1111 NQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKA-SQQWFIDTE--RIKPEALAC 1186 (1281)
Q Consensus 1111 ~~G~~~~~~~~~~~g~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~-~~qwf~~~~--~~~~~~~~~ 1186 (1281)
.+|+|++++| .|+||.+.+||++++..|.+.|++ +.+++.| +|+|||||+|+++++ ++||||+++ +++++++++
T Consensus 338 ~~G~~~~~~g-~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~-~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~ 415 (897)
T PRK12300 338 HKGVLKENTG-EYAGKPVREAREKITKDLIEKGIADIMYEFSN-RPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKA 415 (897)
T ss_pred cceEEeeccc-CcCCeEHHHHHHHHHHHHHHCCCeEEEEecCC-CCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHH
Confidence 5899998876 499999999999999999999976 7888888 577779999999986 599999998 699999999
Q ss_pred hcCceeeccccHHHHHHHHccCCceeeecccccCceecE---EEeC
Q psy17125 1187 LEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPV---FYDG 1229 (1281)
Q Consensus 1187 ~~~~~~~P~~~~~~~~~~~~~~~dWciSRqr~wG~~iP~---~~~~ 1229 (1281)
+++++|+|+++++++.+||++++||||||||+||||||+ |.++
T Consensus 416 ~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~~e 461 (897)
T PRK12300 416 LDNMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIE 461 (897)
T ss_pred HccCEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCccCCEEee
Confidence 999999999999999999999999999999999999995 6653
No 81
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.89 E-value=4.7e-25 Score=230.30 Aligned_cols=148 Identities=21% Similarity=0.333 Sum_probs=92.3
Q ss_pred ceeEEeeccccCCCcccccccCCccccceecccCceEEeehhhHHhHHhhccCC-eeEeccccccccCCcccccCCCccC
Q psy17125 456 LHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKWTFQTD-IDVVCDFPGQYLQDITYIHPINKEQ 534 (1281)
Q Consensus 456 ~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~-~~~~~~~~G~~L~g~~~~hPl~~~~ 534 (1281)
..|.||||||+||+|++|||++|+|+.+......... ..+.+++.......+ .....+..|. +.|.++.||+++.+
T Consensus 21 ~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~~~~--l~~fi~~~~~~~~~~~~~~~~~k~Gv-~tg~~aihP~t~~~ 97 (185)
T PF13603_consen 21 EKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAENNPE--LQEFIEKCKKIKNSERNKDFKEKEGV-FTGLYAIHPLTGKK 97 (185)
T ss_dssp CEEEEEES-GGGGGG--EEEEETTSCHHHHCTTTHHH--HHHHHHHHHTS-HHHHHHCSSS--EE-EEEEEEE-TTTS-E
T ss_pred CEEEEEECCcchhhCceEEEECCCCHHHHhhhhhhhh--HHHHHHHHhcCCHhHhhhhccccccC-cCCCEEECCCCCCC
Confidence 5799999999999999999999999965433211100 001111111110000 0011234566 67899999999766
Q ss_pred cceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCeecccCCC----------------CccCCCCCCCCCCcee
Q psy17125 535 RDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQ----------------GKYSPDAGPGLEGLNI 598 (1281)
Q Consensus 535 ~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid~~----------------G~~~~~~~~~~~G~~v 598 (1281)
+||+.++||.+++|||+||+||||+++||+||++|+||+..||... |.+.+ . .+|.||..
T Consensus 98 --iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~n-S-~~f~Gl~~ 173 (185)
T PF13603_consen 98 --IPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILIN-S-GEFNGLSS 173 (185)
T ss_dssp --EEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTSS---S--EE-S-S-GGGTTSBH
T ss_pred --ccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEEe-C-CCCCCCCH
Confidence 9999999999999999999999999999999999999999888654 33442 2 37899988
Q ss_pred ccccchhHHhhhc
Q psy17125 599 LGDGKDQVLHLVE 611 (1281)
Q Consensus 599 ~~~~~~~v~~~L~ 611 (1281)
. +|++.|++.|+
T Consensus 174 ~-eA~~~I~~~Le 185 (185)
T PF13603_consen 174 K-EAREKIIKKLE 185 (185)
T ss_dssp H-HHHHHHHHHHH
T ss_pred H-HHHHHHHHHhC
Confidence 4 78888888764
No 82
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.89 E-value=1e-21 Score=225.97 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=95.7
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCC--------chHHHHHHHhcccCC--C
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG--------LPIELKAITSKDKLL--S 85 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G--------~pie~~a~~~~~~~~--~ 85 (1281)
.++++|+|..|++ |||.+||||++.++.+|+++||+|++|++|.+++|+|+|| +|-+ ..+..|..+ -
T Consensus 16 ~~~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~~~~G~pi~~i 92 (353)
T cd00674 16 KGKEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YEQYIGMPLSSV 92 (353)
T ss_pred cCCCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HHHhcCccchhc
Confidence 4567899998885 9999999999999999999999999999999999999993 4433 333333111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCH-HHHHHHHHHHHHHHhCCcEEe
Q psy17125 86 PLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDK-EYVKNQLCQFYNLYKQDYIYR 148 (1281)
Q Consensus 86 ~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~-~~~~~v~~~f~~L~~~G~iy~ 148 (1281)
|... ..|..|++.+.+.+++.|.+|||++| +++|++. ..-.+.+.++..|.+.+.|..
T Consensus 93 p~p~-g~~~~~~d~~~~~f~~~l~~lgi~~d----~~~~T~~y~~g~~~~~i~~~L~~~~~I~~ 151 (353)
T cd00674 93 PDPF-GCCESYAEHFERPFEESLEKLGIEVE----FISQSQMYKSGLYDENILIALEKRDEIMA 151 (353)
T ss_pred hhhc-CCCHHHHHHHHHHHHHHHHHcCCeee----eeecCCchhhchHHHHHHHHHHHCChHHH
Confidence 1111 22468999999999999999999998 4445544 444788888899988876644
No 83
>KOG2007|consensus
Probab=99.88 E-value=1.3e-20 Score=213.62 Aligned_cols=169 Identities=17% Similarity=0.188 Sum_probs=143.9
Q ss_pred CccceeeccceeeehhhHHHHHHHHhcCCCCCceEEee-ceeeccCCCcccccCCCccChhhhhcccccCcccccccCcc
Q psy17125 767 PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLH-GFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNV 845 (1281)
Q Consensus 767 p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~h-G~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~ 845 (1281)
..|+|-+|.|+.+.|...-+..+.+.....++-+.++| |++. .+|+|||||++|+|+..++++
T Consensus 258 ~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~-i~g~KMSKSLkNFiTIke~Lk--------------- 321 (586)
T KOG2007|consen 258 QLDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLT-INGEKMSKSLKNFITIKEALK--------------- 321 (586)
T ss_pred ccceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeee-eccchhhhhhccceeHHHHHH---------------
Confidence 56899999999999999999999998888888888888 8876 899999999999999999999
Q ss_pred cccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHH
Q psy17125 846 ISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVY 925 (1281)
Q Consensus 846 ~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~ 925 (1281)
+|.+++||++++.+.. .+.++|+.+.+..+..+...+.|++.-+......-. ........+..
T Consensus 322 --------------~~sp~qLRl~fl~~~w-r~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~--~~~~~~~~e~~ 384 (586)
T KOG2007|consen 322 --------------KYSPRQLRLAFLLHQW-RSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAK--PFEKLSEKEAE 384 (586)
T ss_pred --------------hcCHHHHHHHHHHHHh-cCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hhhccChHHHH
Confidence 9999999999999887 788999999999998888888888876655443311 12346677888
Q ss_pred HHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHhhhhHHHHhhc
Q psy17125 926 MLKRLCEFQNTMDTLY-GEFQYARASRVLLNFVVNELSAFYFTLVK 970 (1281)
Q Consensus 926 il~~l~~~~~~v~~~~-e~~~~~~ai~~i~~f~~~~l~~~Yle~~k 970 (1281)
+..++......+..++ ++++.+.++..+.+++ ..+|.|+....
T Consensus 385 l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lv--s~~N~~i~~~~ 428 (586)
T KOG2007|consen 385 LLEDFGKTQTAVHAALCDNFDTPRVMEAIRELV--SQGNAYIRESG 428 (586)
T ss_pred HHHhhhhHHHHHHHHHHhccccHHHHHHHHHHH--hhhhHHHHHhc
Confidence 9999999999888886 5899999999999998 66788987665
No 84
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.87 E-value=2.4e-22 Score=222.26 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=101.2
Q ss_pred cEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q psy17125 20 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALE 99 (1281)
Q Consensus 20 ~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~ 99 (1281)
+.|++ =|+|...+||||+|+++..|++.||++..||+|.+++++.+...+|..+|.+.+ +++ .+++++
T Consensus 10 ~~Y~C--GPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g---~~~-------~ela~~ 77 (300)
T PF01406_consen 10 RMYVC--GPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEG---VSP-------QELARR 77 (300)
T ss_dssp EEEEE--EEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTT---S-H-------HHHHHH
T ss_pred EEEcC--CCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhcc---CCH-------HHHHHH
Confidence 35555 368889999999999999999999999999999999999999999999999887 788 556999
Q ss_pred HHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeC-cceeecCC
Q psy17125 100 TINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDL-KPVYWSPS 158 (1281)
Q Consensus 100 ~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~-~~v~w~p~ 158 (1281)
+.+.+.++|++|||... ...+.-.++...+..+..+|.++|++|... +.|||+..
T Consensus 78 y~~~f~~dm~~Lnv~~p----~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 78 YEEEFFEDMKALNVLPP----DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVS 133 (300)
T ss_dssp HHHHHHHHHHHTT--------SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CC
T ss_pred HHHHHHHHHHHcCCCCC----ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeec
Confidence 99999999999999985 445666689999999999999999999999 99999864
No 85
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.86 E-value=1.7e-22 Score=258.88 Aligned_cols=171 Identities=21% Similarity=0.284 Sum_probs=134.2
Q ss_pred CcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhcc-CC
Q psy17125 174 HVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQ-TD 252 (1281)
Q Consensus 174 ~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~-~~ 252 (1281)
+.+.+++|+|++.+ .+.+++||||||||||||+||+|||+++|+.+..+++.. ++..++....... ..
T Consensus 224 g~~~~~~i~f~~~~---------~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 292 (805)
T PRK00390 224 GRSEGAEVTFKVED---------SDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPA--VAAFIEECKKKSDLER 292 (805)
T ss_pred cccceEEEEEEccC---------CCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHH--HHHHHHHHhhhcchhh
Confidence 45678899999753 235899999999999999999999999998775432211 2222222111111 22
Q ss_pred ceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCC-----
Q psy17125 253 IEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGK----- 327 (1281)
Q Consensus 253 ~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~----- 327 (1281)
..++.+++|. +.|.+++||+++ +.+||+.++||++++|||+||+|||||++||.+|++++||++++|+.+|.
T Consensus 293 ~~~~~~~~g~-l~g~~~~~P~~~--~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~ 369 (805)
T PRK00390 293 QTETKEKTGV-FTGLYAIHPLTG--EKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDIS 369 (805)
T ss_pred hhcccceeee-ecCcEEECCCCC--CeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccc
Confidence 3455788996 999999999987 68999999999999999999999999999999999999999999986662
Q ss_pred ---cCCCC----CCCCCCccccCCCcccccccccCccc
Q psy17125 328 ---YSPDA----GPGLEGLNILGDGKDQVLHLVEPDVL 358 (1281)
Q Consensus 328 ---~~~~~----~~~~~gl~~~~~~~~~v~~l~e~~~~ 358 (1281)
|.+++ .+.|+|+.+.++++.++..|++.|++
T Consensus 370 ~~~~~~~g~~~~~~~~~Gl~~~~a~~~Ii~~L~~~g~~ 407 (805)
T PRK00390 370 EEAYTGDGVLINSGELDGLDSEEAKEAIIAWLEEKGLG 407 (805)
T ss_pred cccccCCeEEEeccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 33331 14689999999999999999999975
No 86
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.85 E-value=2.7e-19 Score=222.10 Aligned_cols=216 Identities=15% Similarity=0.167 Sum_probs=142.9
Q ss_pred eccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCccccccccc
Q psy17125 773 EGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDIT 852 (1281)
Q Consensus 773 ~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~ 852 (1281)
.|.||. .||..++....++....| +++..|++.+ .+|.|||||+||+|+|.++++ .|++..++.+..+...
T Consensus 334 ~g~~q~-~h~~~v~~~l~~lG~~~~-~~l~h~~~~~-V~~~kmSkr~Gn~V~~~dll~------~~~~ra~~~i~~~~~~ 404 (566)
T TIGR00456 334 WGSDHH-LHIAQFFAILEKLGFYKK-KELIHLNFGM-VPLGSMKTRRGNVISLDNLLD------EASKRAGNVITIKNDL 404 (566)
T ss_pred ecCcHH-HHHHHHHHHHHHcCCCCC-CceEEEEEEE-EECCCCCccCCceeeHHHHHH------HHHHHHHHHHHhcCCc
Confidence 344444 466666555555543344 7888888887 578899999999999999988 5666555555322000
Q ss_pred ccccCCCCCchhHHHHHHHhcCCCCCccccCcchhcc-chHHHHHHHHHHHHHHHhhcCCCCCC-------CCcCcHHHH
Q psy17125 853 QGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNS-SQDDVQKIRSSLRYLLGVLHNHSEST-------GSISRYVDV 924 (1281)
Q Consensus 853 ~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~-~~~~~~kl~n~~r~~~~~l~~~~~~~-------~~~~~~~d~ 924 (1281)
....-...+|+|++||++++..+ ..|++|+.+.+.. ..+....+.++..|+.+.+.+..... .......++
T Consensus 405 ~~~~~~~~vg~dAvRy~~L~~~~-~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~ 483 (566)
T TIGR00456 405 EEEDVADAVGIGAVRYFDLSQNR-ETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADDFSLLEEKEK 483 (566)
T ss_pred cHHHHHHHhcccceeeHHhhcCC-CCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhcccccccccccccCCCCHHHH
Confidence 00011228999999999999884 8999999887544 33455667777777766655432111 011245577
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCC--hHHHHHHHHHHHHHHHHHHHHhc
Q psy17125 925 YMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSIN--GEARLSGLHTLHNIFHVLLRTVA 1002 (1281)
Q Consensus 925 ~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~--~~~r~~~~~~l~~~l~~l~~lLa 1002 (1281)
.++..+..+...+.+++++++++.+++.+++++ ..+ |.|++.. ++...+.. ...|.........+|+..+.||.
T Consensus 484 ~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La-~~~-N~yy~~~--~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lLG 559 (566)
T TIGR00456 484 ELLKLLLQFPDVLEEAAEELEPHVLTNYLYELA-SLF-SSFYKAC--PVLDAENENLAAARLALLKATRQTLKNGLQLLG 559 (566)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH-HHH-HHHHhcC--ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 788999999999999999999999999999999 454 5566654 33332111 12344444555666777777664
No 87
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.84 E-value=7.8e-22 Score=253.23 Aligned_cols=167 Identities=20% Similarity=0.258 Sum_probs=133.3
Q ss_pred CcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhcc---
Q psy17125 174 HVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQ--- 250 (1281)
Q Consensus 174 ~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~--- 250 (1281)
+.+.+++|+|++.+ .+.+++||||||||||||+||+|||+.+|+..... .+..++.+.....
T Consensus 222 g~s~g~~i~f~~~~---------~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~------~~~~v~~~~~~~~~~~ 286 (842)
T TIGR00396 222 GKSEGVEITFKIAD---------HKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAE------NNPKVAAFIKKILQKT 286 (842)
T ss_pred cccceEEEEEEcCC---------CCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhc------chHHHHHHHHHHhccC
Confidence 45677999998743 23589999999999999999999999998766321 1122332222211
Q ss_pred -CCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccC-----
Q psy17125 251 -TDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITN----- 324 (1281)
Q Consensus 251 -~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~----- 324 (1281)
.+..++..++|..+.|.+++||+++ +.+||++++||++++|||+||+|||||++||.+|+++|||++++|++
T Consensus 287 ~~~~~~~~~~~~g~~~g~~~~~P~~~--~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~ 364 (842)
T TIGR00396 287 TTERTKETKLKKGVFTGIKAIHPLTG--EKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNL 364 (842)
T ss_pred chhhhhhhcccccEecCCEEECCCCC--CEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCccccc
Confidence 1123444667778899999999987 68999999999999999999999999999999999999999999984
Q ss_pred -------CCCcCCCCCCCCCCccccCCCcccccccccCcccc
Q psy17125 325 -------QGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLW 359 (1281)
Q Consensus 325 -------~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~ 359 (1281)
+|.+.++ +.|+|+.+.++++.++..|++.|++.
T Consensus 365 ~~~~~~~~G~~~~~--~~~~Gl~~~~A~~~Ii~~L~~~g~~~ 404 (842)
T TIGR00396 365 KTQAFTEDGVLVNS--GEFNGLNSSEAREAIIAMLEKEGKGK 404 (842)
T ss_pred ccccccCCceEecc--hhcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 5666554 45899999999999999999999753
No 88
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.80 E-value=5.8e-19 Score=214.90 Aligned_cols=125 Identities=17% Similarity=0.134 Sum_probs=91.5
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCC--------chHHHHHHHhcccCC--C
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG--------LPIELKAITSKDKLL--S 85 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G--------~pie~~a~~~~~~~~--~ 85 (1281)
.++++++|..|+ +|||.+||||++..+.+|+++|++|++|++|.+++|+|+|| +|....+.+..|+-+ -
T Consensus 20 ~~~~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~ 98 (510)
T PRK00750 20 GKKPPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEI 98 (510)
T ss_pred CCCCcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccC
Confidence 445568888887 59999999999999999999999999999999999999998 566333444444211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHH-HHHHHHHHHHHhCCcE
Q psy17125 86 PLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYV-KNQLCQFYNLYKQDYI 146 (1281)
Q Consensus 86 ~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~-~~v~~~f~~L~~~G~i 146 (1281)
|..... +..|++.+.+.+++.|.++||.+| ++++++.... .+.+.+...|.+.+.|
T Consensus 99 p~p~G~-~~~~~~~~~~~~~~~~~~~gi~~d----~~~~t~~y~~g~~~~~i~~~l~~~~~i 155 (510)
T PRK00750 99 PDPFGC-HESYAEHFNAPLREFLDRFGIEYE----FISATECYKSGRYDEAILTALENRDEI 155 (510)
T ss_pred CCCCCC-chHHHHHHHHHHHHHHHHcCCceE----EEehhhhhccCchHHHHHHHHHhHHHH
Confidence 111111 588999999999999999999998 4455543333 4455555555555543
No 89
>PLN02563 aminoacyl-tRNA ligase
Probab=99.80 E-value=2.4e-20 Score=239.68 Aligned_cols=174 Identities=18% Similarity=0.203 Sum_probs=128.9
Q ss_pred CcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCc------eEEeehhhHHhhhh
Q psy17125 174 HVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGA------NVIVAKCLVESLKW 247 (1281)
Q Consensus 174 ~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~------~~i~~~~~~~~~~~ 247 (1281)
+.+...+|+|++.+... ...+.+++|||||||||||++||+|||+++|+...+..+ .++.+......+.
T Consensus 302 G~s~g~~i~F~~~~~~~----~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~- 376 (963)
T PLN02563 302 GRSEGAELDFSVLDGEG----KERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLE- 376 (963)
T ss_pred cccceEEEEEEecCccc----cCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHh-
Confidence 45677999999853110 002358999999999999999999999999986543222 1111111111110
Q ss_pred hccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCC--
Q psy17125 248 TFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQ-- 325 (1281)
Q Consensus 248 ~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~-- 325 (1281)
.. .....++..+.|..++||+++ +.+||+.++||++++|||+||+|||||++||.+|++++||++++|+++
T Consensus 377 ----~~-~~~~~k~g~~~g~~~~~P~~~--~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~ 449 (963)
T PLN02563 377 ----RT-ELQKEKTGVFTGSYAINPATG--EAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADG 449 (963)
T ss_pred ----hh-hccceecccccCcEEeccCCC--CeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCcc
Confidence 00 112345667788999999987 689999999999999999999999999999999999999999999532
Q ss_pred ------CCcCCCC-----C---CCCCCccccCCCcccccccccCcccc
Q psy17125 326 ------GKYSPDA-----G---PGLEGLNILGDGKDQVLHLVEPDVLW 359 (1281)
Q Consensus 326 ------g~~~~~~-----~---~~~~gl~~~~~~~~~v~~l~e~~~~~ 359 (1281)
|.|.+++ + ..++||.+.++++.++..|++.|++.
T Consensus 450 ~~~~~~~~y~~~G~l~ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~ 497 (963)
T PLN02563 450 NEDDAEKAYTGEGVIVNSSSSGLDINGLSSKEAAKKVIEWLEETGNGK 497 (963)
T ss_pred ccccccccccCceeEecCCCcccccCCcCHHHHHHHHHHHHHhCCCCC
Confidence 4444332 2 23899999999999999999999763
No 90
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.79 E-value=4.5e-20 Score=218.73 Aligned_cols=107 Identities=27% Similarity=0.470 Sum_probs=92.1
Q ss_pred cccCCCcEEEcccceecccccccHHHHHHhhcC--ceeeccccHHHHHHHHccCCceeeecccccCceecEEEeCCc--e
Q psy17125 1157 DWRTKKPVILKASQQWFIDTERIKPEALACLEG--VNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPVFYDGDT--I 1232 (1281)
Q Consensus 1157 ~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~--~~~~P~~~~~~~~~~~~~~~dWciSRqr~wG~~iP~~~~~~~--~ 1232 (1281)
|||||+|++++.++|||++++++++++++.+++ ++|+|++.++++.+||++++||||||||.||+|||+|+|.++ .
T Consensus 156 c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~ 235 (382)
T cd00817 156 CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHW 235 (382)
T ss_pred cccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcE
Confidence 999999999999999999999999999999987 999999999999999999999999999999999999999763 4
Q ss_pred eechhhhhhhhc--------------ccCcCcccccccCCccccc
Q psy17125 1233 IVNEANIKHFCT--------------LIDEHGPDFWWSLPVEQLL 1263 (1281)
Q Consensus 1233 ~~~~~~~~~~~~--------------~~~~~~~d~Wf~~~~~~~~ 1263 (1281)
++.++..+++.. ..+++++|+||++.+.-+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~ 280 (382)
T cd00817 236 VVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFS 280 (382)
T ss_pred EecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHH
Confidence 444443333211 1368999999999876544
No 91
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.73 E-value=3.9e-17 Score=174.14 Aligned_cols=153 Identities=33% Similarity=0.577 Sum_probs=125.9
Q ss_pred cCcchhccchHHHHHHHHHHHHHHHhhcCCCCCC----CCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy17125 882 IGKNILNSSQDDVQKIRSSLRYLLGVLHNHSEST----GSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFV 957 (1281)
Q Consensus 882 f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~----~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~ 957 (1281)
++.+.+++.+++++|+||++||+.+.+.++.+.. .......|+|++++++.+++++.++|++|+|++|++.++.|+
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~ 80 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFC 80 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3567788899999999999999998776654321 124567899999999999999999999999999999999999
Q ss_pred HHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCCCCccccccccccccc
Q psy17125 958 VNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYLQYS 1036 (1281)
Q Consensus 958 ~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~p~~~ 1036 (1281)
++++||+|++..|||++++..++..+..+..++..+++.++++|+|||||+||++|+.|+... ...+++...||.++
T Consensus 81 ~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~~--~~~~v~~~~wP~~~ 157 (180)
T cd07960 81 TVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEK--KEESVFLEDWPELP 157 (180)
T ss_pred HHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccccC--CCCCeeccCCCCCc
Confidence 888999999999999987543334455677889999999999999999999999999997431 01345567788765
No 92
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.73 E-value=2.6e-17 Score=175.92 Aligned_cols=153 Identities=19% Similarity=0.353 Sum_probs=121.6
Q ss_pred cCcchhccchH-HHHHHHHHHHHHHH--hhcCCCCCC----CCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy17125 882 IGKNILNSSQD-DVQKIRSSLRYLLG--VLHNHSEST----GSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLL 954 (1281)
Q Consensus 882 f~~~~l~~~~~-~~~kl~n~~r~~~~--~l~~~~~~~----~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~ 954 (1281)
|+++.++++.+ |++|+||++||+++ +..++.+.. .......|+|++++++++++++.++|++|+|++|++.++
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~ 80 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL 80 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 46677888888 99999999999976 444443221 124578999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCCCCccccccccccc
Q psy17125 955 NFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYLQ 1034 (1281)
Q Consensus 955 ~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~p~ 1034 (1281)
.|++ .++++|++.+|+++++.. ++..+..++.++..+++.++++|+|||||+|||+|+.++...+.-..++..+.||.
T Consensus 81 ~f~~-~~~~~Y~e~~K~~~~~~~-~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~~~~~si~~~~wP~ 158 (183)
T cd07961 81 EFID-ELTNWYIRRNRKRFWGEE-GDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWPE 158 (183)
T ss_pred HHHH-HhhhhHhhhchHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCCCceeeecCCC
Confidence 9995 667999999999988764 23445567889999999999999999999999999999742100012355667886
Q ss_pred cc
Q psy17125 1035 YS 1036 (1281)
Q Consensus 1035 ~~ 1036 (1281)
++
T Consensus 159 ~~ 160 (183)
T cd07961 159 VD 160 (183)
T ss_pred Cc
Confidence 54
No 93
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.70 E-value=8.7e-17 Score=175.57 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=110.8
Q ss_pred EEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Q psy17125 21 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALET 100 (1281)
Q Consensus 21 f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~ 100 (1281)
..|=..+|||||+|||||+|+++++|+++|++|+.||+|.+..|+|++|.+|+..|.+.. . ++++++.+
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~----~-------~~~~~~~~ 70 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE----K-------WRKLVEES 70 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH----H-------HHHHHHHH
Confidence 456668999999999999999999999999999999999999999999999999886653 1 47889999
Q ss_pred HHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcc
Q psy17125 101 INTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSR 160 (1281)
Q Consensus 101 ~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~ 160 (1281)
++.+++++++|||++| .+.+|++. ...+..++++|.++|++|+.++.+++|+.+.
T Consensus 71 ~~~~~~~~~~L~i~~d---~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~ 125 (212)
T cd00671 71 IKADLETYGRLDVRFD---VWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTEF 125 (212)
T ss_pred HHHHHHHHHHhCCcCc---eecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechhh
Confidence 9999999999999998 56667654 8899999999999999999999999887543
No 94
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.69 E-value=2.1e-17 Score=192.88 Aligned_cols=113 Identities=50% Similarity=0.928 Sum_probs=83.2
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhccc-------CCCHHHHHH
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDK-------LLSPLDIRK 91 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~-------~~~~~e~~~ 91 (1281)
+||+|++|||||||++||||+++++++|+++||+||+||+|.+++||||||+||+.+|++..|. ..+++++.+
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 4577777777777777777777777777777777777777777777777777777777776431 235667777
Q ss_pred HHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHH
Q psy17125 92 KAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKN 132 (1281)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~ 132 (1281)
.|+++++++++.+++++++||++.||++ +++|+++.|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~-~~~T~~~~~~~~ 120 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWEN-PYKTMDPEYMES 120 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCC-CeECCCHHHHHH
Confidence 7777777777777777777777777774 777777777664
No 95
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.67 E-value=5.8e-18 Score=177.19 Aligned_cols=155 Identities=21% Similarity=0.285 Sum_probs=94.6
Q ss_pred CcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhcc---
Q psy17125 174 HVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQ--- 250 (1281)
Q Consensus 174 ~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~--- 250 (1281)
+.+..+.|+|++... +..+-|+||||+||+|.++|++.|++..+.-.... ...++.+..+..
T Consensus 5 GkS~G~~i~F~i~~~---------~~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~------~~~l~~fi~~~~~~~ 69 (185)
T PF13603_consen 5 GKSEGAEIDFKIKGS---------NEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAEN------NPELQEFIEKCKKIK 69 (185)
T ss_dssp -EEEEEEEEEEBTTS---------SCEEEEEES-GGGGGG--EEEEETTSCHHHHCTTT------HHHHHHHHHHHHTS-
T ss_pred CCcccEEEEEEecCC---------CCEEEEEECCcchhhCceEEEECCCCHHHHhhhhh------hhhHHHHHHHHhcCC
Confidence 456788999998752 34799999999999999999999998833211000 011111111110
Q ss_pred ------CCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccC
Q psy17125 251 ------TDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITN 324 (1281)
Q Consensus 251 ------~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~ 324 (1281)
...+..+. ..|...+||+++ +++||+.++||..++|||+||.||+|+..||.+|++++||+.+|+.+
T Consensus 70 ~~~~~~~~~~k~Gv-----~tg~~aihP~t~--~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~ 142 (185)
T PF13603_consen 70 NSERNKDFKEKEGV-----FTGLYAIHPLTG--KKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKP 142 (185)
T ss_dssp HHHHHHCSSS--EE-----EEEEEEE-TTTS---EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEB
T ss_pred HhHhhhhccccccC-----cCCCEEECCCCC--CCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcC
Confidence 11223333 345677999996 78999999999999999999999999999999999999999988864
Q ss_pred C----------------CCcCCCCCCCCCCccccCCCccccccc
Q psy17125 325 Q----------------GKYSPDAGPGLEGLNILGDGKDQVLHL 352 (1281)
Q Consensus 325 ~----------------g~~~~~~~~~~~gl~~~~~~~~~v~~l 352 (1281)
. |.++++ | .|+||+..++++.++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~G~l~nS-~-~f~Gl~~~eA~~~I~~~L 184 (185)
T PF13603_consen 143 KDDNEEIDNKQEAYTGDGILINS-G-EFNGLSSKEAREKIIKKL 184 (185)
T ss_dssp SSSS---STTSS---S--EE-SS-G-GGTTSBHHHHHHHHHHHH
T ss_pred CCCcccccccccCcCCCEEEEeC-C-CCCCCCHHHHHHHHHHHh
Confidence 4 444443 2 467777766665555444
No 96
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=7.5e-14 Score=170.37 Aligned_cols=130 Identities=18% Similarity=0.161 Sum_probs=102.7
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHH---Hhcc--------------
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAI---TSKD-------------- 81 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~---~~~~-------------- 81 (1281)
++..|=.-=|||+|+||+||+||.+++|+++|.++..||+|...+.+++.|.++..-+. +.+.
T Consensus 117 ~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg 196 (577)
T COG0018 117 KKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLG 196 (577)
T ss_pred CEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHHH
Confidence 47788888999999999999999999999999999999999999999999999753111 1110
Q ss_pred -----------cCCC-H-HHHHHH-------------HHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHH
Q psy17125 82 -----------KLLS-P-LDIRKK-------------AKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLC 135 (1281)
Q Consensus 82 -----------~~~~-~-~e~~~~-------------~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~ 135 (1281)
++.. . .+.++. -+++++..++.+++++.+||+.+| .+++..+-.+...+..
T Consensus 197 ~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD---~~~~E~e~~~~~~~~~ 273 (577)
T COG0018 197 EYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFD---VYDSEGESFYNGKVEK 273 (577)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccc---eeeccchhhhcccHHH
Confidence 0111 0 222221 133677788899999999999999 7777788788889999
Q ss_pred HHHHHHhCCcEEeeCc
Q psy17125 136 QFYNLYKQDYIYRDLK 151 (1281)
Q Consensus 136 ~f~~L~~~G~iy~~~~ 151 (1281)
++..|.++|++|+.++
T Consensus 274 vv~~L~~~~~~~e~~G 289 (577)
T COG0018 274 VVEDLEEKGLLYEDDG 289 (577)
T ss_pred HHHHHHhcCCEeeeCC
Confidence 9999999999998443
No 97
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.66 E-value=6.7e-14 Score=173.41 Aligned_cols=132 Identities=11% Similarity=-0.005 Sum_probs=99.7
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHH--HHhcccCC--C--------
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA--ITSKDKLL--S-------- 85 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a--~~~~~~~~--~-------- 85 (1281)
+++..|=..=|||+|+||+||+||.+++|+++|.++..||+|.....+++.|.++..-+ .++.|... .
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELF 191 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHH
Confidence 35688888999999999999999999999999999999999999999999999976422 12222100 0
Q ss_pred ------------HHHHHHH------------------HHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHH
Q psy17125 86 ------------PLDIRKK------------------AKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLC 135 (1281)
Q Consensus 86 ------------~~e~~~~------------------~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~ 135 (1281)
.+++.+. .+.+++..++.+++++++|||.+||- . .+..|...+..
T Consensus 192 ~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~----~-~es~~~~~~~~ 266 (562)
T PRK12451 192 KLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNF----Q-GEAFYNDLMED 266 (562)
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceee----c-chHhhhhhHHH
Confidence 0011111 23445667888999999999999944 1 33356777899
Q ss_pred HHHHHHhCCcEEeeCccee
Q psy17125 136 QFYNLYKQDYIYRDLKPVY 154 (1281)
Q Consensus 136 ~f~~L~~~G~iy~~~~~v~ 154 (1281)
++.+|.++|++|+.++.++
T Consensus 267 v~~~L~~~g~~~e~dGa~~ 285 (562)
T PRK12451 267 FIGILEEHDLLEESEGALV 285 (562)
T ss_pred HHHHHHHCCCEEecCCeEE
Confidence 9999999999998766553
No 98
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.65 E-value=1.3e-15 Score=184.02 Aligned_cols=94 Identities=19% Similarity=0.156 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCC--------CchHHHHHHHhcccC----C
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCH--------GLPIELKAITSKDKL----L 84 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~--------G~pie~~a~~~~~~~----~ 84 (1281)
++.+++|..|.+ |||.+||||++..+.+|+++|++|++|++|.+++|+|++ ++| + ...+..|.- -
T Consensus 16 ~~~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p-~-~~~~ylG~Pl~~vp 92 (515)
T TIGR00467 16 PKNLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLP-E-ELETYLGMPLTRIP 92 (515)
T ss_pred cCCeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccccccccccc-H-HHHHhCCCcceecC
Confidence 445799999998 999999999999999999999999999999999999999 344 1 133333310 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCceec
Q psy17125 85 SPLDIRKKAKNFALETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 85 ~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~D 116 (1281)
.|.. .+..|++.+...+.+.|..|||.++
T Consensus 93 dp~g---~~~s~~~h~~~~~~~~l~~~gi~~e 121 (515)
T TIGR00467 93 DPEG---CKTSYAEHFLIPFLESLPVLGINPE 121 (515)
T ss_pred CCCC---CcHHHHHHHHHHHHHHHHHcCCeEE
Confidence 1111 1378999999999999999999986
No 99
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.61 E-value=2.1e-16 Score=197.59 Aligned_cols=133 Identities=29% Similarity=0.452 Sum_probs=123.2
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhH-HHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHH
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNK-ILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNF 96 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~-~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~ 96 (1281)
.++|+|+.|||||||.|||||++++ +.+|+++||+||+|++|.+++|+|+||+||+.+|++++ +++ +++
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g---~~~-------~~~ 71 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEG---VTP-------QEL 71 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcC---CCH-------HHH
Confidence 3579999999999999999999997 99999999999999999999999999999999999876 787 667
Q ss_pred HHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccc
Q psy17125 97 ALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTAL 163 (1281)
Q Consensus 97 ~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~l 163 (1281)
|+++.+.+++++++|||++| .+++|++++|.+.++++|.+|+++|+||++.++++|||.|+|+|
T Consensus 72 ~~~~~~~~~~~~~~l~i~~d---~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l 135 (556)
T PRK12268 72 ADKYHEEHKEDFKKLGISYD---LFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFL 135 (556)
T ss_pred HHHHHHHHHHHHHHcCCcCC---CCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCc
Confidence 99999999999999999877 68899999999999999999999999999999999998754433
No 100
>KOG0437|consensus
Probab=99.60 E-value=1.1e-15 Score=179.17 Aligned_cols=175 Identities=17% Similarity=0.234 Sum_probs=127.0
Q ss_pred ccccccCcccc-cccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccccCCcccccccccccc
Q psy17125 349 VLHLVEPDVLW-TENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHDRPGTALAESELEY 427 (1281)
Q Consensus 349 v~~l~e~~~~~-~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~~~~t~laeaeiey 427 (1281)
..+|++.|-+. .+.|+ -||+..|.|-.+|+.+. |++ | ...+.+
T Consensus 222 ~n~L~~~gkI~fgkRyT---IyspkDgQpCmDHDR~s----------------------GEg-V------~Pqeyt---- 265 (1080)
T KOG0437|consen 222 FNKLKEAGKIKFGKRYT---IYSPKDGQPCMDHDRAS----------------------GEG-V------GPQEYT---- 265 (1080)
T ss_pred HHHHHhcCCcccCccee---eecCCCCCccccccccc----------------------CCC-C------CcceEE----
Confidence 44678888665 44442 47999999999998543 221 1 111111
Q ss_pred cCCCCCcceeehhhccCCccccccC--cccceeEEeeccccCCCcccccccCCccccceecccC-ceEEeehhhHH-hHH
Q psy17125 428 KPDHISKSIYLKIKLNQVPAHLLEG--ATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG-ANVIVAKCLVE-NLK 503 (1281)
Q Consensus 428 ~~~~~s~si~v~~~~~~~~~~~~~~--~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~-~~~i~a~~~~~-~~~ 503 (1281)
.+++++.+.....+++ +.+++++..|.||+|++|++.++|+|+..|..++..+ .+++++++++. ++.
T Consensus 266 ---------liKle~le~~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~Nms 336 (1080)
T KOG0437|consen 266 ---------LIKLEVLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMS 336 (1080)
T ss_pred ---------EEEEEecccchhhccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeehHHHhhcc
Confidence 2222333322122222 3457889999999999999999999999999999864 46677776644 444
Q ss_pred hhc----cCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHH
Q psy17125 504 WTF----QTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLAL 569 (1281)
Q Consensus 504 ~~~----~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~ 569 (1281)
.|- ...+..+.++.|++|+|..+..|+.-.++ +.++|+..|..++|||+|.+||+.+|+||...+
T Consensus 337 yQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~-vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~ 405 (1080)
T KOG0437|consen 337 YQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYER-VYALPMLTILATKGTGVVTSVPSDSPDDFAALQ 405 (1080)
T ss_pred hhhccccCCcccceeeecchhhcCCcccCcchhhhe-eeeccceeeeccCCceeEEeCCCCCchhhhHHH
Confidence 442 11466778999999999999999987765 999999999999999999999999999999763
No 101
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.56 E-value=1.3e-14 Score=150.55 Aligned_cols=110 Identities=29% Similarity=0.552 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhc
Q psy17125 923 DVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVA 1002 (1281)
Q Consensus 923 d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLa 1002 (1281)
|+|++++++++++++.++|++|+|++|++.++.|+++++||+|++..++|+++++..+. |. ++.++..+++.+++||+
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~-~~-~~~~l~~~l~~~~~ll~ 78 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDES-RE-AQYTLYEILKILLILLS 78 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHH-HH-HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhH-HH-HHHHHHHHHHHHhhccC
Confidence 79999999999999999999999999999999998899999999999999998766655 55 88999999999999999
Q ss_pred cccCccHHHHHhhCCCCCCCCccccccccccc
Q psy17125 1003 PIMPHLAEEVYSHLPSRQGTFSSFCHFKVYLQ 1034 (1281)
Q Consensus 1003 P~~P~laeel~~~L~~~~~~~~s~~~~~~~p~ 1034 (1281)
|||||+||++|++|........++++.+.||.
T Consensus 79 P~~P~~aEeiw~~l~~~~~~~~~si~~~~~p~ 110 (153)
T PF08264_consen 79 PFMPFIAEEIWQRLKSEKLGEKSSIFLEKWPE 110 (153)
T ss_dssp TTSHHHHHHHHHHCTTHHTTSSSSGGGS----
T ss_pred CCCcHHHHHHHHHhhhccCCCCCeeeeCCCCC
Confidence 99999999999888321112234556677885
No 102
>PLN02286 arginine-tRNA ligase
Probab=99.51 E-value=1.3e-11 Score=153.19 Aligned_cols=194 Identities=13% Similarity=0.152 Sum_probs=119.6
Q ss_pred eEEeeceeeccCCCcccccCCCccChhhhhccccc--Cccccccc-CcccccccccccccCCCCCchhHHHHHHHhcCCC
Q psy17125 800 NVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKK--LPAYEKSV-GNVISAHDITQGAKKLPAYGVDVLRWWVAAHASK 876 (1281)
Q Consensus 800 ~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~--~~~msks~-gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~ 876 (1281)
..+..|+|+..+|+||||.+||+|+.+|+++-... .+.|.+.. ..-.+..+..+. -...|.||+||++++..+
T Consensus 364 ~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~---a~~vg~~Airy~~L~~~~- 439 (576)
T PLN02286 364 EHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQA---AEAVGYGAVKYADLKNNR- 439 (576)
T ss_pred EEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHH---HHHhhhhhhhhhhhhcCC-
Confidence 34678999767888999999999999999982110 01111110 000111110000 016789999999999887
Q ss_pred CCccccCcchhccch-H-------HHHHHHHHHHHHHHhhcCCCC-CCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHH
Q psy17125 877 DPTVPIGKNILNSSQ-D-------DVQKIRSSLRYLLGVLHNHSE-STGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYA 947 (1281)
Q Consensus 877 ~~d~~f~~~~l~~~~-~-------~~~kl~n~~r~~~~~l~~~~~-~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~ 947 (1281)
..++.|+.+.+.... + -..|+.+++|........... .........++.++..|..+...+.++.++++.+
T Consensus 440 ~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~ 519 (576)
T PLN02286 440 LTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPN 519 (576)
T ss_pred CCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 788999988743211 1 123444444443110000000 0011224567788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhc
Q psy17125 948 RASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVA 1002 (1281)
Q Consensus 948 ~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLa 1002 (1281)
..++.++++. ..++.||=+ + ++...+ +...|.........+|+..+.||.
T Consensus 520 ~l~~Yl~~LA-~~F~~fY~~-~--~Vl~~~-~~~aRL~L~~a~~~vL~~gL~LLG 569 (576)
T PLN02286 520 RLCEYLYNLS-EKFTKFYSN-C--KVNGSE-EETSRLLLCEATAIVMRKCFHLLG 569 (576)
T ss_pred HHHHHHHHHH-HHHHHHHhc-C--ccCCCC-chhHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999 789998842 2 222211 224455555666777788777775
No 103
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.50 E-value=5.4e-15 Score=183.93 Aligned_cols=132 Identities=32% Similarity=0.457 Sum_probs=124.3
Q ss_pred EEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Q psy17125 21 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALET 100 (1281)
Q Consensus 21 f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~ 100 (1281)
|+|+.|||||||.|||||+++++.+|+++||+||+|++|.+++|+|+||+||+.+|++++ +++ +++++++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g---~~~-------~e~~~~~ 70 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEG---LTP-------KELVDKY 70 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcC---CCH-------HHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999886 788 5679999
Q ss_pred HHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccc
Q psy17125 101 INTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAE 165 (1281)
Q Consensus 101 ~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad 165 (1281)
.+.+++++++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++++|||.|+|+|+|
T Consensus 71 ~~~~~~~l~~LgI~~D---~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~ 132 (530)
T TIGR00398 71 HEEFKDDWKWLNISFD---RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPD 132 (530)
T ss_pred HHHHHHHHHHhCCCCC---CCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCch
Confidence 9999999999999988 5778999999999999999999999999999999999998887754
No 104
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.48 E-value=4.4e-13 Score=136.00 Aligned_cols=133 Identities=23% Similarity=0.463 Sum_probs=108.0
Q ss_pred cCcchhccchHHHHHHHHHHHHHHHhhcCCCCC--CCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q psy17125 882 IGKNILNSSQDDVQKIRSSLRYLLGVLHNHSES--TGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVN 959 (1281)
Q Consensus 882 f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~--~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~ 959 (1281)
|+++.+.+++++++|+||+.+++.......... ........|+++++.++++++++.++|++|+|++|++.+++++.+
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~ 80 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWN 80 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 567788889999999999999875532322111 012335678999999999999999999999999999999999944
Q ss_pred hhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhC
Q psy17125 960 ELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016 (1281)
Q Consensus 960 ~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L 1016 (1281)
+++|+|++..+||.... ++.+....+.++.++++.++++|+|||||+|+++|+.|
T Consensus 81 ~~~N~Yi~~~~pW~~~~--~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 81 DFCDWYLELVKPRLYGE--DEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHhHHHHHHhhHHHcCC--ChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 48999999999996642 23344567788999999999999999999999999875
No 105
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.43 E-value=8.2e-14 Score=173.09 Aligned_cols=71 Identities=23% Similarity=0.341 Sum_probs=66.1
Q ss_pred CccccCCCcEEEcccceecccccccHHHHHHhhcC-cee-eccccHHHHHHHHcc-CCceeeec-ccccCceecE
Q psy17125 1155 PYDWRTKKPVILKASQQWFIDTERIKPEALACLEG-VNF-VPESAKKSLRDQIAQ-RPYWCISR-QRVWGVPIPV 1225 (1281)
Q Consensus 1155 p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~-~~~-~P~~~~~~~~~~~~~-~~dWciSR-qr~wG~~iP~ 1225 (1281)
|+|||||+|+|++.++|||++++.+++.+.+.+++ +.+ .|+..++++.+|+++ ++|||||| |+.||+|||.
T Consensus 142 p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~ 216 (511)
T PRK11893 142 YRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPG 216 (511)
T ss_pred CCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCC
Confidence 89999999999999999999999999999999875 565 599999999999985 99999999 9999999996
No 106
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.43 E-value=1.1e-12 Score=131.80 Aligned_cols=122 Identities=14% Similarity=0.157 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCC---CCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhh
Q psy17125 893 DVQKIRSSLRYLLGVLHNHSEST---GSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLV 969 (1281)
Q Consensus 893 ~~~kl~n~~r~~~~~l~~~~~~~---~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~ 969 (1281)
+++++.|++.++.+.+.++..+. .......|+|++++++++++++.++|++|+|++|++.+++|+ +++|+|++..
T Consensus 5 l~~~~gnll~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~n~y~~~~ 82 (129)
T cd07957 5 LANNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAANKYIDET 82 (129)
T ss_pred HHhhHhhHHHHHHHHHHHHcCCcCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHhhhccC
Confidence 45666666666655443322221 112356789999999999999999999999999999999998 6889999999
Q ss_pred cccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhC
Q psy17125 970 KDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016 (1281)
Q Consensus 970 k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L 1016 (1281)
|||...++.+...+..++.++.++++.++++|+|||||+||++|+.|
T Consensus 83 kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 83 APWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred CCHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 99877643223344557788899999999999999999999999875
No 107
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.42 E-value=1e-13 Score=175.83 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=55.3
Q ss_pred CccccCCCcEEEcccceecccccccHHHHHHhhcCc-e-eeccccHHHHH-HHHcc-CCceeeeccc-ccCceecE
Q psy17125 1155 PYDWRTKKPVILKASQQWFIDTERIKPEALACLEGV-N-FVPESAKKSLR-DQIAQ-RPYWCISRQR-VWGVPIPV 1225 (1281)
Q Consensus 1155 p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~~-~-~~P~~~~~~~~-~~~~~-~~dWciSRqr-~wG~~iP~ 1225 (1281)
|+|+|||+|+|++.++|||++++++++.+++.+++. . +.|+..++.+. +||++ ++|||||||| .||+|||.
T Consensus 144 ~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~ 219 (648)
T PRK12267 144 GKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPF 219 (648)
T ss_pred CcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCC
Confidence 788888888888888888888888888888887642 3 34777777777 88886 7888888886 58888884
No 108
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.41 E-value=1.8e-12 Score=127.96 Aligned_cols=116 Identities=21% Similarity=0.278 Sum_probs=93.9
Q ss_pred cCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH-HHHHHHh
Q psy17125 882 IGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVL-LNFVVNE 960 (1281)
Q Consensus 882 f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i-~~f~~~~ 960 (1281)
|+.+.+++..++++|+++.+....+.. .+. ......|+|++++++.+++++.++|++|+|++|++.+ +.+. +
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~~---~~~--~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~--~ 73 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIETE---GEL--EELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQ--N 73 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcc---CCc--cccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--H
Confidence 566777788889999998877643211 111 2346789999999999999999999999999999997 7776 4
Q ss_pred hhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhC
Q psy17125 961 LSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016 (1281)
Q Consensus 961 l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L 1016 (1281)
.+++|++..+++ ....++.++++.++++|+|||||+||++|+.|
T Consensus 74 ~~~~Y~~~~~~~------------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 74 DLDWYRERGGAG------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHHHhCcc------------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 688999988875 12357899999999999999999999999865
No 109
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.30 E-value=1.8e-11 Score=120.74 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=92.5
Q ss_pred cCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Q psy17125 882 IGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNEL 961 (1281)
Q Consensus 882 f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l 961 (1281)
|+.+.+.+.+++++|++|+++.......... ........|+|++++++++++++.++|++|+|++|++.+++|+ +.
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~-~~- 76 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPA--AAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV-NA- 76 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccccc--cccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH-HH-
Confidence 5677888999999999999887543211100 0113456799999999999999999999999999999999999 55
Q ss_pred hhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhC
Q psy17125 962 SAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016 (1281)
Q Consensus 962 ~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L 1016 (1281)
.|.|++..+| .+.++.++++.++++|+|||||+||++|+.|
T Consensus 77 ~n~~~~~~~p--------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 77 LYKYKKKDAQ--------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred HHHhhccccc--------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 4666553222 3567899999999999999999999999865
No 110
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.24 E-value=4.8e-12 Score=146.93 Aligned_cols=92 Identities=28% Similarity=0.550 Sum_probs=78.6
Q ss_pred cchHHHHhhccCCceeeeeeeeccCccccCCCcEEEcccceecccccccHHHHHHhhcCceeeccccHHHHHHHHccCCc
Q psy17125 1131 EGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPY 1210 (1281)
Q Consensus 1131 ~~~~~v~~l~~~~~l~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~d 1210 (1281)
.-..++..|.++|++...... + +.++|||++++++++++++.+++++|.|+..++++.+||++..|
T Consensus 115 ~v~~~f~~L~~~G~iY~~~~~--v------------~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~d 180 (312)
T cd00668 115 AVELIFSRLYEKGLIYRGTHP--V------------RITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLESLLD 180 (312)
T ss_pred HHHHHHHHHHHCCCEEeecce--e------------EeeeeEEEEcHHHHHHHHHHHhcCCcCChHHHHHHHHHHhCCCC
Confidence 334677889999987432211 1 89999999999999999999998889999999999999999999
Q ss_pred eeeecccccCceecEEEeCCceeechhhhhhhhcccCcCcccccccCCc
Q psy17125 1211 WCISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLPV 1259 (1281)
Q Consensus 1211 WciSRqr~wG~~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Wf~~~~ 1259 (1281)
||||||+.||+|+| .+++|+||++++
T Consensus 181 ~~isR~~~WG~~~P-----------------------~~~i~~Wfds~~ 206 (312)
T cd00668 181 WAISRQRYWGTPLP-----------------------EDVFDVWFDSGI 206 (312)
T ss_pred eEEeccCCCCCcCC-----------------------cccccchhhccH
Confidence 99999999999999 577888888874
No 111
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.17 E-value=5.6e-11 Score=121.81 Aligned_cols=76 Identities=24% Similarity=0.140 Sum_probs=67.4
Q ss_pred EcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Q psy17125 24 HDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINT 103 (1281)
Q Consensus 24 ~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~ 103 (1281)
..+.|||||++|+||+++++++|+++||+|++|++|.++.|+|++|.++...|.+.+ ..+ ++|++.+++.
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~---~~~-------~~~~~~~~~~ 71 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKG---ENA-------KAFVERWIER 71 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcC---CCH-------HHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999888775 577 5567777777
Q ss_pred HHHHHH
Q psy17125 104 QKAEFE 109 (1281)
Q Consensus 104 ~~~~l~ 109 (1281)
++++++
T Consensus 72 ~~~~~~ 77 (143)
T cd00802 72 IKEDVE 77 (143)
T ss_pred HHHHHH
Confidence 777665
No 112
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.12 E-value=4.2e-11 Score=139.37 Aligned_cols=91 Identities=18% Similarity=0.332 Sum_probs=79.3
Q ss_pred hHHHHhhccCCceeeeeeeeccCccccCCCcE-EEcccceecccccccHHHHHHhhcCc--eeeccccHHHHHHHHcc-C
Q psy17125 1133 KDQVLHLVEPDVLWTENYQHSYPYDWRTKKPV-ILKASQQWFIDTERIKPEALACLEGV--NFVPESAKKSLRDQIAQ-R 1208 (1281)
Q Consensus 1133 ~~~v~~l~~~~~l~~e~~~h~~p~~~R~~~pv-~~~~~~qwf~~~~~~~~~~~~~~~~~--~~~P~~~~~~~~~~~~~-~ 1208 (1281)
.+++..|.++|++... .+...+|.+|++.+ |++.++|||++++++++.+++.+++- .+.|++.++.+.+||++ +
T Consensus 102 ~~i~~~L~ekG~iY~~--~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l 179 (319)
T cd00814 102 QEFFKKLYENGYIYEG--EYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGL 179 (319)
T ss_pred HHHHHHHHHCCCEEee--eeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCC
Confidence 4677888899987432 35667899999888 99999999999999999999998743 37899999999999997 9
Q ss_pred Cceeeeccc-ccCceecE
Q psy17125 1209 PYWCISRQR-VWGVPIPV 1225 (1281)
Q Consensus 1209 ~dWciSRqr-~wG~~iP~ 1225 (1281)
+|||||||+ +||+|+|.
T Consensus 180 ~d~~isR~~~~WGipvp~ 197 (319)
T cd00814 180 KDLSITRDLFDWGIPVPL 197 (319)
T ss_pred cccCCCccCcccCeeCCC
Confidence 999999999 99999996
No 113
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.01 E-value=1.6e-10 Score=147.14 Aligned_cols=69 Identities=19% Similarity=0.333 Sum_probs=64.9
Q ss_pred CccccCCCcEEEcccceecccccccHHHHHHhhcC-ceeeccccHHHHHHHHc-cCCceeeeccccc-Cceec
Q psy17125 1155 PYDWRTKKPVILKASQQWFIDTERIKPEALACLEG-VNFVPESAKKSLRDQIA-QRPYWCISRQRVW-GVPIP 1224 (1281)
Q Consensus 1155 p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~-~~~~P~~~~~~~~~~~~-~~~dWciSRqr~w-G~~iP 1224 (1281)
|+|.||++|+|++.++|||++++++++.+++.+++ ..| |++.++.+.+||+ +++|||||||+.| |+|+|
T Consensus 170 ~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP 241 (673)
T PRK00133 170 PKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIP 241 (673)
T ss_pred CccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhCCCcccceeeeCCccceECC
Confidence 88999999999999999999999999999999864 666 9999999999997 5899999999999 99999
No 114
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.96 E-value=1.5e-09 Score=127.79 Aligned_cols=138 Identities=14% Similarity=0.147 Sum_probs=98.2
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHH--hcc------------
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAIT--SKD------------ 81 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~--~~~------------ 81 (1281)
...++.+|=..=|||+|+||+||+||.+++|+++|.++..||+|.....+++.|.++..-+.. ..+
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 96 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKH 96 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccc
Confidence 356778888999999999999999999999999999999999999999999999997531111 000
Q ss_pred --------------cCC---CHHHHHH--------------HHHHHHHH-HHHHHHHHHHHcCceeccCCCeeecCCHHH
Q psy17125 82 --------------KLL---SPLDIRK--------------KAKNFALE-TINTQKAEFESWGVLADWEHNCYHTFDKEY 129 (1281)
Q Consensus 82 --------------~~~---~~~e~~~--------------~~~~~~~~-~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~ 129 (1281)
... .++++.+ ..+++... ..+.++++|+++|+.+| .++...+-.+
T Consensus 97 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fD---v~~~E~Es~~ 173 (354)
T PF00750_consen 97 LEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFD---VWFDESESFY 173 (354)
T ss_dssp HHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---S---EEEEHCHHHH
T ss_pred hhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhC---cCcccchhhh
Confidence 000 0011111 12334444 67788999999999999 6776766677
Q ss_pred HHHHHHHHHHHHhCCcEEeeCcceeec
Q psy17125 130 VKNQLCQFYNLYKQDYIYRDLKPVYWS 156 (1281)
Q Consensus 130 ~~~v~~~f~~L~~~G~iy~~~~~v~w~ 156 (1281)
...+..++.+|.++|++|+.++.++..
T Consensus 174 ~~~v~~vl~~L~e~g~~~~~dGa~~i~ 200 (354)
T PF00750_consen 174 SGKVDEVLERLKEKGLLYESDGALWID 200 (354)
T ss_dssp TTHHHHHHHHHHCTTTEEEETTEEEEE
T ss_pred hhHHHHHHHHHHhCCcEEecCCcEEEe
Confidence 889999999999999999988776543
No 115
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=3.4e-09 Score=132.95 Aligned_cols=139 Identities=22% Similarity=0.291 Sum_probs=97.2
Q ss_pred CcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhcc--C
Q psy17125 174 HVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQ--T 251 (1281)
Q Consensus 174 ~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~--~ 251 (1281)
+.|....|.|.+.+.. ....+-++||+|.|++|.+.+++-|+...+-..+.++.-+ .+.++-.... .
T Consensus 227 g~s~g~~v~f~~~~~~-------~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~----~~a~fv~~~~~~~ 295 (814)
T COG0495 227 GPSEGYEVAFVVDGEE-------EIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTP----LVAEFVDECKGTG 295 (814)
T ss_pred CCCCCeEEEEecCCcc-------cceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccch----hHHHHHHHhcCCC
Confidence 5566677777763210 1467899999999999999999999887554433332111 1111111111 1
Q ss_pred CceEe---ecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCC
Q psy17125 252 DIEVV---CDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQG 326 (1281)
Q Consensus 252 ~~~~~---~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g 326 (1281)
....+ ...+|-.+ |...+||+++ ..|||+.++||....|||+||.+|||+..||.+|.++++|+..++...+
T Consensus 296 ~~~~~~~~~~k~gv~~-g~~a~~p~~~--e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~ 370 (814)
T COG0495 296 VVESVPAHAEKDGVFL-GGYAINPVNG--EKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEG 370 (814)
T ss_pred ceeeeeccCCCcceec-cccccCCCCC--CcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCC
Confidence 11111 22344333 4667899998 8999999999999999999999999999999999999999988886554
No 116
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=98.87 E-value=2.2e-08 Score=98.25 Aligned_cols=115 Identities=22% Similarity=0.293 Sum_probs=90.3
Q ss_pred chhccchHHHHHHHHHHHHHHHhhcCCCCCCC-CcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhh
Q psy17125 885 NILNSSQDDVQKIRSSLRYLLGVLHNHSESTG-SISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSA 963 (1281)
Q Consensus 885 ~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~-~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~ 963 (1281)
+.+.++.++++++|+++++.........+... ......|+|++++++.+++++.++|++|+|++|++.+++|+ +.+ |
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~-~~~-n 79 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFT-NEL-N 79 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-Hhc-c
Confidence 34667788999999999986554332211100 12345689999999999999999999999999999999999 565 8
Q ss_pred HHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17125 964 FYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIM 1005 (1281)
Q Consensus 964 ~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~ 1005 (1281)
.|++..+||.+.+. .+..++.++.++++.++++|+|||
T Consensus 80 ~y~~~~~pw~~~~~----~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 80 WYLDELKPALQTEE----LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HHHHHhhHHHcCch----hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 89999999987651 233456788999999999999997
No 117
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.56 E-value=3.8e-08 Score=114.28 Aligned_cols=75 Identities=31% Similarity=0.465 Sum_probs=65.8
Q ss_pred HHHHhhccCCceeeeeeeeccCccccCCCcEEEcccceecccc--cccHHHHHHhhcCceeeccccHHHHHHHHccCCce
Q psy17125 1134 DQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDT--ERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYW 1211 (1281)
Q Consensus 1134 ~~v~~l~~~~~l~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~--~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~dW 1211 (1281)
.+...|.++|++.... ..+.+| +.++|||+++ +++++.+.+.+++..+.|+..++.+.+|++
T Consensus 105 ~~f~~L~~~G~iy~~~--~~v~~~---------~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~~~~~~~l~----- 168 (314)
T cd00812 105 WLFLKLYEKGLAYKKE--APVNWC---------KLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIG----- 168 (314)
T ss_pred HHHHHHHHCCCEEecC--ceeeee---------CccceEEEEcCcHHHHHHHHHHHHhcCcCCHHHHHHHHHHhe-----
Confidence 3556888999875433 367788 8899999999 999999999999888889999999999998
Q ss_pred eeecccccCceecE
Q psy17125 1212 CISRQRVWGVPIPV 1225 (1281)
Q Consensus 1212 ciSRqr~wG~~iP~ 1225 (1281)
||||+.||+|+|.
T Consensus 169 -isR~~~wGipvP~ 181 (314)
T cd00812 169 -CSRQRYWGTPIPW 181 (314)
T ss_pred -eeeecCCcCCcCc
Confidence 9999999999995
No 118
>KOG0435|consensus
Probab=98.55 E-value=1e-07 Score=112.86 Aligned_cols=173 Identities=25% Similarity=0.280 Sum_probs=110.1
Q ss_pred CccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCceE
Q psy17125 176 SKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIEV 255 (1281)
Q Consensus 176 ~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 255 (1281)
+...-+.|++.+. +..+..+.+|||+|+||+|...+++.|++..+.... ++.+-+.. .+
T Consensus 251 ~~G~el~F~ll~~------~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~---------~lkefl~~---~~--- 309 (876)
T KOG0435|consen 251 CDGAELMFPLLDD------GSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDS---------SLKEFLSK---SD--- 309 (876)
T ss_pred ccceEEEEEeccC------CCCCceEEEEecCchhhccceEEEEcCCchhhhhhc---------hHHHhhhh---hh---
Confidence 3444566887652 334578999999999999999999999987544321 11111110 00
Q ss_pred eecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceec----cCCCCcCCC
Q psy17125 256 VCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLI----TNQGKYSPD 331 (1281)
Q Consensus 256 ~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~----~~~g~~~~~ 331 (1281)
+.. +|=. -++...||+++ +.+||+.++||....|||+|+.+|+|+..|+.++.+-++-.+.++ +..|+-...
T Consensus 310 l~~-Kg~~-lp~~A~Np~tg--~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~ 385 (876)
T KOG0435|consen 310 LPQ-KGVQ-LPCQAKNPVTG--RAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQ 385 (876)
T ss_pred ccc-cCcc-cceeeccCCCC--ceeeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhcc
Confidence 011 2333 34788999998 799999999999999999999999999999999998444332222 233333333
Q ss_pred CCCCCCCccccC-CCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccC
Q psy17125 332 AGPGLEGLNILG-DGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTER 391 (1281)
Q Consensus 332 ~~~~~~gl~~~~-~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~ 391 (1281)
. .++|+.+.+ +...+++.++++|+ |..|.-.++..|.|+-.+
T Consensus 386 ~--~~tn~~~~q~a~~~l~~~~~~~g~----------------g~~~vs~kLkDWLiSRQR 428 (876)
T KOG0435|consen 386 K--AFTNLDIRQNAALKLFQFAERKGV----------------GGYVVSYKLKDWLISRQR 428 (876)
T ss_pred c--cccchhHHHHHHHHHHHHHHhcCC----------------Ccceecchhhhhhhhhhh
Confidence 2 124533332 22345566666664 223344567778775433
No 119
>PLN02610 probable methionyl-tRNA synthetase
Probab=98.46 E-value=8.9e-08 Score=122.78 Aligned_cols=78 Identities=15% Similarity=0.295 Sum_probs=65.4
Q ss_pred eeeeeccCccccCCCcEEEcccceecccccccHHHHHHhhcCceeeccccHH---HHHHHHc-cCCceeeecccccCcee
Q psy17125 1148 ENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKK---SLRDQIA-QRPYWCISRQRVWGVPI 1223 (1281)
Q Consensus 1148 e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~~~~~P~~~~~---~~~~~~~-~~~dWciSRqr~wG~~i 1223 (1281)
++.++..|+|++||+|++.+.++|||++++.+++.+++.+++-...|.+..+ .+.+||+ +++||||||...||+|+
T Consensus 181 ~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipv 260 (801)
T PLN02610 181 NPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPV 260 (801)
T ss_pred ChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccC
Confidence 3455678899999999999999999999999999999999753334554444 5558996 59999999999999999
Q ss_pred cE
Q psy17125 1224 PV 1225 (1281)
Q Consensus 1224 P~ 1225 (1281)
|.
T Consensus 261 P~ 262 (801)
T PLN02610 261 PL 262 (801)
T ss_pred CC
Confidence 94
No 120
>PLN02224 methionine-tRNA ligase
Probab=98.33 E-value=3.2e-07 Score=114.40 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=130.9
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHH
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNF 96 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~ 96 (1281)
.+++|+|++|||||||+|||||+++++++|+++||+||+|++|.+++|||+||+||+.+|.+++ .+| .++
T Consensus 67 ~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g---~~p-------~e~ 136 (616)
T PLN02224 67 EADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANG---RNP-------PEH 136 (616)
T ss_pred CCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcC---CCh-------HHH
Confidence 5678999999999999999999999999999999999999999999999999999999998876 778 456
Q ss_pred HHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcccccccccc
Q psy17125 97 ALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESEL 168 (1281)
Q Consensus 97 ~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev 168 (1281)
|+++.+.+++.+++|||++| .+++|++|.|.+.|+++|.+|+++|+||++.++++|||+|++.+.+.|+
T Consensus 137 ~~~~~~~~~~~~~~l~I~~D---~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l 205 (616)
T PLN02224 137 CDIISQSYRTLWKDLDIAYD---KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKEL 205 (616)
T ss_pred HHHHHHHHHHHHHHcCCCCC---cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHH
Confidence 88888889999999999777 7999999999999999999999999999999999999999999988775
No 121
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=4.7e-07 Score=110.45 Aligned_cols=72 Identities=15% Similarity=0.325 Sum_probs=66.2
Q ss_pred ccCccccCCCcEEEcccceecccccccHHHHHHhhcC--ceeeccccHHHHHHHHcc-CCceeeec-ccccCceec
Q psy17125 1153 SYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEG--VNFVPESAKKSLRDQIAQ-RPYWCISR-QRVWGVPIP 1224 (1281)
Q Consensus 1153 ~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~--~~~~P~~~~~~~~~~~~~-~~dWciSR-qr~wG~~iP 1224 (1281)
.-|+||+||...|+|.++.||++++++.+.+++.+++ -...|++.++.+.+||++ ++|||||| ...||+|+|
T Consensus 171 ~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP 246 (558)
T COG0143 171 INPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVP 246 (558)
T ss_pred CCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCccCC
Confidence 3588999999999999999999999999999999974 334699999999999977 99999999 999999999
No 122
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.14 E-value=4.8e-06 Score=91.36 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=69.9
Q ss_pred EcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Q psy17125 24 HDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINT 103 (1281)
Q Consensus 24 ~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~ 103 (1281)
+=-+|.|||.||+||++++++.++++| ++++.+..-+|+...+.. . . ...+.+.
T Consensus 4 ~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~-----~-----~-----------~~~~~~~ 57 (240)
T cd09287 4 MRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK-----R-----P-----------DPEAYDM 57 (240)
T ss_pred EeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc-----c-----c-----------hHHHHHH
Confidence 345899999999999999999999999 677777777888755442 0 0 1112334
Q ss_pred HHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEe
Q psy17125 104 QKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYR 148 (1281)
Q Consensus 104 ~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 148 (1281)
+.++|+.||+ +|+ ..++.+ ++.+..+++..+|.++|++|.
T Consensus 58 i~~dL~wLGl--~~d-~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 58 IPEDLEWLGV--KWD-EVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHHcCC--CCC-Cccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 7899999999 566 454443 455666777889999999997
No 123
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=97.93 E-value=5.9e-06 Score=98.61 Aligned_cols=73 Identities=22% Similarity=0.447 Sum_probs=59.1
Q ss_pred eccCccccCCCcEEEcccceecccccccHHHHHHhhcCc-eeeccccHHHHHHHHcc-CCceeeecccccCceec
Q psy17125 1152 HSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGV-NFVPESAKKSLRDQIAQ-RPYWCISRQRVWGVPIP 1224 (1281)
Q Consensus 1152 h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~~-~~~P~~~~~~~~~~~~~-~~dWciSRqr~wG~~iP 1224 (1281)
-.=|.|-.||.+++.|.++|||++++++++.+.+.+++. .+.|+..++...+||++ ++||||||...||+|+|
T Consensus 164 l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP 238 (391)
T PF09334_consen 164 LINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVP 238 (391)
T ss_dssp SECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSEEET
T ss_pred ccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcceee
Confidence 456889999999999999999999999999999999743 34688888888999998 89999999999999999
No 124
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.86 E-value=2.5e-05 Score=95.63 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=71.7
Q ss_pred EEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Q psy17125 21 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALET 100 (1281)
Q Consensus 21 f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~ 100 (1281)
-+++--+|+|||.||||||+++++.+.+|| +|...+..-+|++.-.+.. . ..++
T Consensus 101 ~V~tRFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~~R----------~-----------~~e~ 154 (567)
T PRK04156 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRTKR----------P-----------DPEA 154 (567)
T ss_pred eEEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCccc----------c-----------hHHH
Confidence 366678999999999999999999999999 4555555566766443321 0 1122
Q ss_pred HHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 101 INTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 101 ~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
.+.+.++|+.||+ +|+ ..++.+ .+.+.......+|.++|++|.-
T Consensus 155 ~~~I~edL~wLGl--~wD-~~~~qS--dr~~~y~~~a~~Li~~G~AY~C 198 (567)
T PRK04156 155 YDMILEDLKWLGV--KWD-EVVIQS--DRLEIYYEYARKLIEMGGAYVC 198 (567)
T ss_pred HHHHHHHHHHcCC--CCC-CccCcc--cCHHHHHHHHHHHHHcCCCccC
Confidence 3678999999999 555 465554 5566777888899999998853
No 125
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.67 E-value=7.8e-05 Score=91.30 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=71.3
Q ss_pred EEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Q psy17125 21 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALET 100 (1281)
Q Consensus 21 f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~ 100 (1281)
-+++=-||.|||.||||||++.++.+.+|| ...|. +..=+|++.-+ +. ..++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar--~~~G~---~iLRidDTDp~------R~-----------------~~e~ 144 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAK--KYKGK---LIIRFDDTDPR------RV-----------------KPEA 144 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCCE---EEEEeCcCCcc------cc-----------------cHHH
Confidence 477888999999999999999999999996 33444 44445665431 11 1234
Q ss_pred HHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 101 INTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 101 ~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
.+.+.++|+.||+.+| ..++++ .|.+....+..+|.++|++|.-
T Consensus 145 ~~~I~edL~wLGi~~d---~~~~qS--d~~~~y~~~a~~Li~~G~AY~C 188 (560)
T TIGR00463 145 YDMILEDLDWLGVKGD---EVVYQS--DRIEEYYDYCRKLIEMGKAYVC 188 (560)
T ss_pred HHHHHHHHHHcCCCCC---cccccc--ccHHHHHHHHHHHHHcCCceee
Confidence 6678999999999854 455444 5667778889999999999974
No 126
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.52 E-value=0.00022 Score=86.41 Aligned_cols=96 Identities=23% Similarity=0.287 Sum_probs=71.5
Q ss_pred EEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Q psy17125 21 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALET 100 (1281)
Q Consensus 21 f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~ 100 (1281)
-+++=-||.|||.||||||++.++...+||- ..|.-+++. |++.- ..-..++
T Consensus 11 ~v~tRFAPsPtG~LHiGharaAlln~l~Ar~--~gG~~iLRi---EDTDp-----------------------~R~~~e~ 62 (523)
T PLN03233 11 QIVTRFPPEPSGYLHIGHAKAALLNDYYARR--YKGRLILRF---DDTNP-----------------------SKEKAEF 62 (523)
T ss_pred eEEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---CCCCC-----------------------CccchHH
Confidence 3678889999999999999999999999974 467666554 44322 0112345
Q ss_pred HHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 101 INTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 101 ~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
.+.+.++|+.||+.+| ..++++ .|-+.-.+...+|.++|++|.-
T Consensus 63 ~~~I~~dL~WLGl~wD---~~~~qS--dr~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 63 EESIIEDLGKIEIKPD---SVSFTS--DYFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred HHHHHHHHHHhCCCCC---CCcccc--ccHHHHHHHHHHHHHcCCeEec
Confidence 6678999999999855 466554 4556667888999999999874
No 127
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.48 E-value=0.00043 Score=84.17 Aligned_cols=95 Identities=23% Similarity=0.134 Sum_probs=67.7
Q ss_pred EEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q psy17125 22 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETI 101 (1281)
Q Consensus 22 ~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~ 101 (1281)
+++=-||.|||.||+|||++.++...+||. ..|.-+++. |++.-. .-..++.
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~--~gG~~iLRi---EDTDp~-----------------------r~~~e~~ 103 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARA--HGGKCYLRY---DDTNPE-----------------------TEEQVYI 103 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---CCCCcc-----------------------ccChHHH
Confidence 567789999999999999999999999975 456555543 443211 1123456
Q ss_pred HHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 102 NTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 102 ~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
+.+.++|+.||+.+| ..+.+ ..|.+...+...+|.++|.+|.-
T Consensus 104 ~~I~~dL~wLGi~~D---~~~~q--S~y~~~~ye~A~~Li~~G~AY~C 146 (574)
T PTZ00437 104 DAIMEMVKWMGWKPD---WVTFS--SDYFDQLHEFAVQLIKDGKAYVD 146 (574)
T ss_pred HHHHHHHHHcCCCCC---CCCcC--chhHHHHHHHHHHHHHcCCEEEc
Confidence 678999999999866 35433 23444445666789999999974
No 128
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.48 E-value=0.00027 Score=79.57 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=66.9
Q ss_pred cCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Q psy17125 25 DGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQ 104 (1281)
Q Consensus 25 ~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 104 (1281)
=-+|.|||.||+||++++++.-.+|| +..|.-++++==+|.. .. ..++.+.+
T Consensus 4 RFAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~~---------------R~-----------~~~~~~~I 55 (272)
T TIGR03838 4 RFAPSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDPP---------------RE-----------VPGAADDI 55 (272)
T ss_pred eeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCC---------------CC-----------ChHHHHHH
Confidence 34799999999999999999999998 5577777665333331 01 22345678
Q ss_pred HHHHHHcCceeccCCCe-eecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 105 KAEFESWGVLADWEHNC-YHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 105 ~~~l~~lgi~~DW~R~~-~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
.++|+.||+.+| .. ++.+ ++.+.-..+..+|.++|++|.-
T Consensus 56 ~~dL~wLGl~wD---e~~~~QS--~r~~~Y~~~~~~L~~~G~aY~C 96 (272)
T TIGR03838 56 LRTLEAYGLHWD---GEVVYQS--QRHALYQAALDRLLAAGLAYPC 96 (272)
T ss_pred HHHHHHcCCCCC---CCeeeee--CCHHHHHHHHHHHHHcCCEEec
Confidence 999999999766 33 4444 3445667788899999999863
No 129
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.45 E-value=0.00029 Score=86.36 Aligned_cols=94 Identities=21% Similarity=0.210 Sum_probs=69.7
Q ss_pred EEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Q psy17125 21 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALET 100 (1281)
Q Consensus 21 f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~ 100 (1281)
-+++=-||.|||.||||||++.++...+||- ..|.-+++. |++.-.- -..++
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar~--~gG~~iLRi---EDTDp~R-----------------------~~~e~ 103 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLADK--YKGKLVFRF---DDTNPSK-----------------------EKEHF 103 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---cCCCCcc-----------------------cCHHH
Confidence 3778889999999999999999999999984 466655543 4432211 12345
Q ss_pred HHHHHHHHHHcCceeccCCC-eeecCCHHHHHHHHHHHHHHHhCCcEE
Q psy17125 101 INTQKAEFESWGVLADWEHN-CYHTFDKEYVKNQLCQFYNLYKQDYIY 147 (1281)
Q Consensus 101 ~~~~~~~l~~lgi~~DW~R~-~~~T~~~~~~~~v~~~f~~L~~~G~iy 147 (1281)
.+.+.++|+.||+.+| . .++++ .|.+.-.++..+|.++|++|
T Consensus 104 ~d~IleDL~WLGl~wD---e~~~~QS--dr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 104 EQAILDDLATLGVSWD---VGPTYSS--DYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred HHHHHHHHHHCCCCCC---Cceeecc--ccHHHHHHHHHHHHHcCCEE
Confidence 6678999999999654 4 44444 45667788889999999999
No 130
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.45 E-value=0.00026 Score=86.01 Aligned_cols=94 Identities=23% Similarity=0.171 Sum_probs=65.5
Q ss_pred EcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Q psy17125 24 HDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINT 103 (1281)
Q Consensus 24 ~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~ 103 (1281)
+=-||.|||.||+|||++.++...+|| +..|.-+++. |++... .-..++.+.
T Consensus 3 tRFaPsPtG~LHiG~ar~al~n~~~A~--~~~G~~iLRi---eDTd~~-----------------------r~~~e~~~~ 54 (522)
T TIGR00440 3 TRFPPEPNGYLHIGHAKSICLNFGYAK--YYNGTCNLRF---DDTNPV-----------------------KEDPEYVES 54 (522)
T ss_pred EecCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEE---cCCCcc-----------------------cCChHHHHH
Confidence 445899999999999999999999997 4566665554 443220 012345667
Q ss_pred HHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 104 QKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 104 ~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
+.++|+.||+.+|.. .+++++ |.+.......+|.++|.+|.-
T Consensus 55 I~~dL~wLG~~~d~~--~~~qS~--~~~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 55 IKRDVEWLGFKWEGK--IRYSSD--YFDELYRYAEELIKKGLAYVD 96 (522)
T ss_pred HHHHHHHcCCCCCCC--ceEccc--cHHHHHHHHHHHHHcCCEEee
Confidence 899999999987622 444443 333334555899999999974
No 131
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.44 E-value=0.00038 Score=76.38 Aligned_cols=93 Identities=20% Similarity=0.177 Sum_probs=66.4
Q ss_pred EEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q psy17125 23 LHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETIN 102 (1281)
Q Consensus 23 i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~ 102 (1281)
++=-+|.|||.||+||+++.++.-.+||- ..|.-++++ |+...+ .-..++.+
T Consensus 3 ~~RFAPsPtG~lHlG~~~~al~~~l~Ar~--~~G~~iLRi---eDtD~~-----------------------R~~~~~~~ 54 (238)
T cd00807 3 VTRFPPEPNGYLHIGHAKAILLNFGYAKK--YGGRCNLRF---DDTNPE-----------------------KEEEEYVD 54 (238)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEe---cCCCCc-----------------------ccchHHHH
Confidence 44458999999999999999999988864 356555443 333221 11234456
Q ss_pred HHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEe
Q psy17125 103 TQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYR 148 (1281)
Q Consensus 103 ~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 148 (1281)
.+.++|+.||+.+| ..++.+ .+.+.-+++..+|.++|++|.
T Consensus 55 ~I~~dL~wlGl~wD---~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 55 SIKEDVKWLGIKPY---KVTYAS--DYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred HHHHHHHHcCCCCC---Cceecc--cCHHHHHHHHHHHHHcCCeec
Confidence 78999999999776 355544 344566778889999999999
No 132
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.43 E-value=0.00019 Score=82.94 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=60.2
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCC--------chHHHHHHHhcccCCC-HHH
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG--------LPIELKAITSKDKLLS-PLD 88 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G--------~pie~~a~~~~~~~~~-~~e 88 (1281)
+.++++-. =-.|+|.+|||+++-.+.+|+++|-+|.+|++|.+++.+|+.. +|-+ ...+..|+-++ ..+
T Consensus 22 ~~~~v~~s-G~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~-~~~~ylg~Plt~VPd 99 (360)
T PF01921_consen 22 KEPYVFAS-GISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNP-ELEKYLGKPLTRVPD 99 (360)
T ss_dssp -SEEEEEE-EE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC--CCCCTTSBTTTSB-
T ss_pred CccEEEec-CCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChH-HHHHhcCCccccCCC
Confidence 45555554 4589999999999999999999999999999999999999984 2222 22233331110 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCceec
Q psy17125 89 IRKKAKNFALETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~~lgi~~D 116 (1281)
--..|..|++.+...+.+.|..+|+.++
T Consensus 100 P~G~~~SyaeH~~~~~~~~L~~~gie~e 127 (360)
T PF01921_consen 100 PFGCHESYAEHFNAPFEEFLDEFGIEYE 127 (360)
T ss_dssp TTSSSSCHHHHHHHHHHHHHHTTT---E
T ss_pred CCCCCccHHHHHHHHHHHHHHHcCCceE
Confidence 0112467899999999999999999886
No 133
>PLN02907 glutamate-tRNA ligase
Probab=97.38 E-value=0.00038 Score=88.58 Aligned_cols=94 Identities=23% Similarity=0.274 Sum_probs=71.3
Q ss_pred EEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q psy17125 22 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETI 101 (1281)
Q Consensus 22 ~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~ 101 (1281)
+++=-||.|||.||||||++.++...+|| +..|.-+++. |++.-. + . ..++.
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~---eDTdp~------r------~-----------~~e~~ 265 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRF---DDTNPS------K------E-----------SDEFV 265 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEe---cCCCCC------c------C-----------ChHHH
Confidence 67888999999999999999999999998 5567666554 444220 0 1 23456
Q ss_pred HHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEe
Q psy17125 102 NTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYR 148 (1281)
Q Consensus 102 ~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 148 (1281)
+.+.++|+.||+.+| ..++++ .|.+.-.+...+|.++|.+|.
T Consensus 266 ~~I~~dl~wLG~~~d---~~~~qS--~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 266 ENILKDIETLGIKYD---AVTYTS--DYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred HHHHHHHHHcCCCCC---Cccccc--ccHHHHHHHHHHHHHcCCeee
Confidence 678999999999766 566655 445566788899999999996
No 134
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.34 E-value=0.00053 Score=82.28 Aligned_cols=94 Identities=18% Similarity=0.177 Sum_probs=67.3
Q ss_pred EEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q psy17125 23 LHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETIN 102 (1281)
Q Consensus 23 i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~ 102 (1281)
.+=-+|.|||.||+||+|++++.-.+||- ..|.-++++ |++.. ..-...+.+
T Consensus 4 r~RFAPSPTG~lHiG~artAL~n~l~Ar~--~gG~fiLRI---EDTD~-----------------------~Rs~~~~~~ 55 (445)
T PRK12558 4 ITRFAPSPTGYLHVGNARTALLNWLYARK--HGGKFILRI---DDTDL-----------------------ERSKQEYAD 55 (445)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEe---ccCCc-----------------------ccchHHHHH
Confidence 34458999999999999999988777763 355555544 33321 011345577
Q ss_pred HHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 103 TQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 103 ~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
.++++|++||+.+| ..|+.++ ..+....+..+|.++|++|+-
T Consensus 56 ~I~e~L~wLGI~~D---e~y~QSe--r~~~y~~~~e~L~e~G~AY~C 97 (445)
T PRK12558 56 AIAEDLKWLGINWD---RTFRQSD--RFDRYDEAAEKLKAAGRLYPC 97 (445)
T ss_pred HHHHHHHHcCCCCC---ccccHHH--HHHHHHHHHHHHHHCCCEEEe
Confidence 88999999999877 5654443 335789999999999998754
No 135
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.31 E-value=0.00079 Score=78.12 Aligned_cols=91 Identities=20% Similarity=0.167 Sum_probs=59.7
Q ss_pred CCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Q psy17125 26 GPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQK 105 (1281)
Q Consensus 26 ~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 105 (1281)
=+|.|||.||+||++++++.-.+|| +..|.-+++.==+|.. .. ..++.+.+.
T Consensus 6 FAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~~---------------R~-----------~~~~~~~i~ 57 (314)
T PF00749_consen 6 FAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDPE---------------RC-----------RPEFYDAIL 57 (314)
T ss_dssp E---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSSTT---------------TC-----------HHHHHHHHH
T ss_pred eCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEeccccccc---------------cc-----------hhhHHHHHH
Confidence 4799999999999999999999888 6677776665333321 11 223455679
Q ss_pred HHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEe
Q psy17125 106 AEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYR 148 (1281)
Q Consensus 106 ~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 148 (1281)
++|+.||+..|-. +++.+ .+.+.-+.+..+|.++|.+|.
T Consensus 58 ~~L~wlGl~~D~~--~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 58 EDLRWLGLEWDYG--PYYQS--DRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp HHHHHHT---STC--EEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred hheeEEEEecCCe--EEeHH--HHHHHHHHHHHHHhhcCCCcc
Confidence 9999999998732 55544 344555777888999999875
No 136
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.27 E-value=0.00077 Score=82.15 Aligned_cols=97 Identities=24% Similarity=0.141 Sum_probs=67.6
Q ss_pred EEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Q psy17125 21 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALET 100 (1281)
Q Consensus 21 f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~ 100 (1281)
=+++=-||.|||.||+|||++.++...+||- ..|.-+++. |++...- -..++
T Consensus 29 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLRi---eDTd~~r-----------------------~~~e~ 80 (554)
T PRK05347 29 RVHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLRF---DDTNPEK-----------------------EDQEY 80 (554)
T ss_pred ceEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---CCCCCCc-----------------------CChHH
Confidence 3778889999999999999999999999984 456555543 4442211 12344
Q ss_pred HHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 101 INTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 101 ~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
.+.+.++|+.||+.+|-. .+++++ |.+.....-.+|.++|++|.-
T Consensus 81 ~~~I~~dL~wLGi~~d~~--~~~qS~--r~~~~y~~a~~Li~~G~AY~c 125 (554)
T PRK05347 81 VDSIKEDVRWLGFDWSGE--LRYASD--YFDQLYEYAVELIKKGKAYVD 125 (554)
T ss_pred HHHHHHHHHHcCCCCCCC--ceeeec--CHHHHHHHHHHHHHcCCEeeC
Confidence 667899999999987633 455543 222333444689999999974
No 137
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.19 E-value=0.00084 Score=85.33 Aligned_cols=100 Identities=22% Similarity=0.170 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHH
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFA 97 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~ 97 (1281)
+..-+++=-||.|||.||+|||++.++...+|| +..|.-.++ +|++...- -.
T Consensus 28 ~~~~v~tRFaPsPtG~lHiGhar~alln~~~A~--~~~G~~~LR---~eDTd~~r-----------------------~~ 79 (771)
T PRK14703 28 RYPRVVTRFPPEPNGYLHIGHAKSILLNFGIAR--DYGGRCHLR---MDDTNPET-----------------------ED 79 (771)
T ss_pred CCCceEEEeCcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---eCCCCCCc-----------------------CC
Confidence 333478889999999999999999999999987 345655544 34443211 12
Q ss_pred HHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 98 LETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 98 ~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
.++.+.+.++|+.||+.+|.. .++++ .|.+.......+|.++|++|.-
T Consensus 80 ~e~~~~I~~dl~wLG~~wd~~--~~~qS--~~~~~y~~~a~~Li~~G~aY~c 127 (771)
T PRK14703 80 TEYVEAIKDDVRWLGFDWGEH--LYYAS--DYFERMYAYAEQLIKMGLAYVD 127 (771)
T ss_pred hHHHHHHHHHHHHcCCCCCCC--ceEee--cCHHHHHHHHHHHHHcCCcccC
Confidence 345667899999999987632 34444 4555667777889999999974
No 138
>PLN02859 glutamine-tRNA ligase
Probab=97.07 E-value=0.0026 Score=80.13 Aligned_cols=95 Identities=21% Similarity=0.081 Sum_probs=66.2
Q ss_pred EEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q psy17125 22 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETI 101 (1281)
Q Consensus 22 ~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~ 101 (1281)
+++=-||.|||.||||||++.++.-.+||.+ .|.-.++. |++.-. .-..++.
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LRi---eDTdp~-----------------------r~~~e~~ 316 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLRF---DDTNPE-----------------------AEKKEYI 316 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe---cCCCCC-----------------------ccchHHH
Confidence 6677899999999999999999999999863 56655543 443211 1123456
Q ss_pred HHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 102 NTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 102 ~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
+.+.++|+.||+. |+ ..+++++ ++...-+ .-.+|.++|++|.-
T Consensus 317 ~~I~edL~WLG~~--~d-~~~~qSd-~f~~~Y~-~A~~Li~~G~AY~C 359 (788)
T PLN02859 317 DHIEEIVEWMGWE--PF-KITYTSD-YFQELYE-LAVELIRRGHAYVD 359 (788)
T ss_pred HHHHHHHHHcCCC--CC-CcccccH-hHHHHHH-HHHHHHHcCCeEec
Confidence 6789999999964 55 4666554 2322323 34569999999974
No 139
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0019 Score=78.04 Aligned_cols=95 Identities=20% Similarity=0.149 Sum_probs=69.5
Q ss_pred EEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q psy17125 22 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETI 101 (1281)
Q Consensus 22 ~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~ 101 (1281)
+++=-+|.|||.||||||++.++.-.+||- ..|.-++++ |++.. + .-..++.
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~--~~G~fiLRi---EDTD~-------~----------------R~~~e~~ 61 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARK--YGGKFILRI---EDTDP-------E----------------RETPEAE 61 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHH--hCCEEEEEe---cCCCC-------C----------------CCCHHHH
Confidence 677789999999999999999999999874 467766665 33322 0 0123345
Q ss_pred HHHHHHHHHcCceeccCCC-eeecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 102 NTQKAEFESWGVLADWEHN-CYHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 102 ~~~~~~l~~lgi~~DW~R~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
+.+.++|+.||+..| . .++.+ ++.+.-.....+|.++|++|.-
T Consensus 62 ~~I~~~L~WLGl~wd---e~~~~QS--~r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 62 DAILEDLEWLGLDWD---EGPYYQS--ERFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred HHHHHHHHhcCCCCC---Cceeehh--hhHHHHHHHHHHHHHCCCeEEe
Confidence 678999999999877 5 34443 4555557778889999998864
No 140
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.04 E-value=0.0012 Score=80.58 Aligned_cols=94 Identities=16% Similarity=0.106 Sum_probs=64.9
Q ss_pred EcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Q psy17125 24 HDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINT 103 (1281)
Q Consensus 24 ~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~ 103 (1281)
+=-+|.|||.||+||++++++.-.+|| ...|.-++++ |++.. .....++.+.
T Consensus 4 ~RfAPsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLRi---eDtD~-----------------------~R~~~~~~~~ 55 (470)
T TIGR00464 4 TRFAPSPTGYLHIGGARTALFNYLFAK--HTGGEFILRI---EDTDL-----------------------ERNIEEAEEA 55 (470)
T ss_pred EeeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEe---CcCCC-----------------------ccCChHHHHH
Confidence 445899999999999999999999988 4556555554 33321 0112334667
Q ss_pred HHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 104 QKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 104 ~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
+.++|+.||+.+|= .+|+.++ +.+.-..+..+|.++|.+|.-
T Consensus 56 i~~~L~wlGl~~de--~~~~QS~--r~~~y~~~~~~L~~~g~aY~C 97 (470)
T TIGR00464 56 ILEGLKWLGISWDE--GPYYQSQ--RLDIYKKYAKELLEEGLAYRC 97 (470)
T ss_pred HHHHHHHCCCCCCC--CeeehhC--CHHHHHHHHHHHHHcCCEEec
Confidence 89999999997662 2455543 234446777889999998853
No 141
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=97.00 E-value=0.0022 Score=70.47 Aligned_cols=105 Identities=17% Similarity=0.121 Sum_probs=70.6
Q ss_pred EEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q psy17125 23 LHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETIN 102 (1281)
Q Consensus 23 i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~ 102 (1281)
++=-+|.|||.||+||++++++.-.+||-+ .|.-++++ |++..+ .+ ..++.+
T Consensus 3 ~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRi---eDtD~~------------R~-----------~~~~~~ 54 (230)
T cd00418 3 VTRFAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRI---EDTDPE------------RS-----------RPEYVE 54 (230)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEe---CcCCCC------------CC-----------ChHHHH
Confidence 344589999999999999999999888753 66666554 333220 01 223466
Q ss_pred HHHHHHHHcCceeccCCC-eeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcccccccccc
Q psy17125 103 TQKAEFESWGVLADWEHN-CYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESEL 168 (1281)
Q Consensus 103 ~~~~~l~~lgi~~DW~R~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev 168 (1281)
.+.++|+.||+.+| . .++.+ .+.+.-+....+|.++| .++....-.++.|+..
T Consensus 55 ~I~~dL~wlGl~wd---~~~~~QS--~r~~~y~~~~~~L~~~g--------g~p~Y~la~vvDD~~~ 108 (230)
T cd00418 55 SILEDLKWLGLDWD---EGPYRQS--DRFDLYRAYAEELIKKG--------GYPLYNFVHPVDDALM 108 (230)
T ss_pred HHHHHHHHcCCCCC---CCeeehh--cCHHHHHHHHHHHHHcC--------CCcccccccccccccc
Confidence 78999999999766 4 44443 34455567788899999 3445555556655553
No 142
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.00071 Score=80.29 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=72.7
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCC--------chHHHHHHHhcccCCCHHHH-
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG--------LPIELKAITSKDKLLSPLDI- 89 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G--------~pie~~a~~~~~~~~~~~e~- 89 (1281)
.++++- .=-.|+|.+|||+++-.+.+|+++|-+|-+|+.|.+++=+|+.. +|-.....+..|. +-.++
T Consensus 19 ~~~~v~-tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~--Plt~IP 95 (521)
T COG1384 19 DEYVVA-TGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGM--PLTEIP 95 (521)
T ss_pred CcEEEe-cCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCC--ccccCC
Confidence 445444 55689999999999999999999999999999999999999984 2322334444441 11111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHcCceec
Q psy17125 90 --RKKAKNFALETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 90 --~~~~~~~~~~~~~~~~~~l~~lgi~~D 116 (1281)
.-.|..|++.+...+.+.|..+||.+.
T Consensus 96 dP~G~~~Sya~hf~~~f~~~l~~~Gi~~E 124 (521)
T COG1384 96 DPFGCCDSYAEHFLRPFEEFLDEFGIEVE 124 (521)
T ss_pred CCccccchHHHHHHHHHHHHHHhcCCceE
Confidence 124688999999999999999999886
No 143
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=96.95 E-value=0.0018 Score=73.83 Aligned_cols=95 Identities=16% Similarity=0.141 Sum_probs=65.5
Q ss_pred EEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q psy17125 22 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETI 101 (1281)
Q Consensus 22 ~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~ 101 (1281)
+++=-.|.|||.||+||++++++.-.+||-. .|.-++++ |+...+ .-..++.
T Consensus 6 v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRi---EDtD~~-----------------------R~~~~~~ 57 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRI---EDIDPP-----------------------REVPGAA 57 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEE---CcCCCC-----------------------ccchHHH
Confidence 4556689999999999999999998888743 45555443 332110 0122345
Q ss_pred HHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEe
Q psy17125 102 NTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYR 148 (1281)
Q Consensus 102 ~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 148 (1281)
+.+.++|+.||+.+|=. .++.+ ++.+.-+.+..+|.++|++|.
T Consensus 58 ~~I~~dL~wlGl~wDe~--~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 58 DAILADLEWLGLHWDGP--VLYQS--QRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred HHHHHHHHHCCCCCCCC--ceEee--ccHHHHHHHHHHHHHCCCcee
Confidence 67799999999976611 44443 345566778889999999885
No 144
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=96.93 E-value=0.0023 Score=76.53 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=64.1
Q ss_pred CCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy17125 27 PPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKA 106 (1281)
Q Consensus 27 pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 106 (1281)
.|.|||.||+||++++++.-.+|| +..|.-++++==+|. .....++.+.+.+
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar--~~gG~fiLRiEDTD~--------------------------~R~~~e~~~~I~~ 56 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAK--QQNEDFLIRIEDTDK--------------------------ERNIEGKDKEILE 56 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC--------------------------CcCChHHHHHHHH
Confidence 699999999999999999988886 456666665433322 0112344567899
Q ss_pred HHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEe
Q psy17125 107 EFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYR 148 (1281)
Q Consensus 107 ~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 148 (1281)
+|+.||+.+| ..|+.++ +.+.-.++..+|.++|.+|.
T Consensus 57 ~L~WlGl~wD---e~y~QSe--R~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 57 ILNLFGISWD---KLVYQSE--NLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred HHHHcCCCCC---CCeehhc--cHHHHHHHHHHHHHcCCeee
Confidence 9999999766 5776654 23455667889999999885
No 145
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=96.75 E-value=0.0045 Score=75.35 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=67.8
Q ss_pred EEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q psy17125 23 LHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETIN 102 (1281)
Q Consensus 23 i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~ 102 (1281)
.+=-.|.|||.||+||+|++++.-.+|| +..|.-++++==+|- .....++.+
T Consensus 6 rtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~--------------------------~R~~~~~~~ 57 (513)
T PRK14895 6 ITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTDK--------------------------ERSTKEAVE 57 (513)
T ss_pred eEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCc--------------------------cccChHHHH
Confidence 4556899999999999999999999998 557777666532221 011234566
Q ss_pred HHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 103 TQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 103 ~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
.+.++|+.||+.+|-. +|+-++ ..+.-.....+|.++|.+|.-
T Consensus 58 ~i~~~L~WLGl~wDe~--py~QSe--R~~~Y~~~a~~Li~~G~AY~C 100 (513)
T PRK14895 58 AIFSGLKWLGLDWNGE--VIFQSK--RNNLYKEAALKLLQNGKAYYC 100 (513)
T ss_pred HHHHHHHHcCCCCCCC--ceeEeC--cHHHHHHHHHHHHHcCCeEEe
Confidence 7899999999976622 455544 234556778899999998853
No 146
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.65 E-value=0.0058 Score=67.68 Aligned_cols=89 Identities=17% Similarity=0.083 Sum_probs=59.4
Q ss_pred EEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q psy17125 23 LHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETIN 102 (1281)
Q Consensus 23 i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~ 102 (1281)
++=-+|.|||.||+||+++.++.-.++|- ..|.-.+ =+|++.. + .+. .++.+
T Consensus 3 ~~RfAPsPtG~LHlG~~~~al~n~l~ar~--~~G~~il---RieDtd~-------~-----r~~-----------~~~~~ 54 (239)
T cd00808 3 RTRFAPSPTGFLHIGGARTALFNYLFARK--HGGKFIL---RIEDTDQ-------E-----RSV-----------PEAEE 54 (239)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEE---EECcCCC-------C-----CCc-----------hHHHH
Confidence 34458999999999999999999888883 4553333 3444321 0 111 23355
Q ss_pred HHHHHHHHcCceeccCCC---------eeecCCHHHHHHHHHHHHHHHhCC
Q psy17125 103 TQKAEFESWGVLADWEHN---------CYHTFDKEYVKNQLCQFYNLYKQD 144 (1281)
Q Consensus 103 ~~~~~l~~lgi~~DW~R~---------~~~T~~~~~~~~v~~~f~~L~~~G 144 (1281)
.+.++|..||+.+| . .|..++ ..+.-..+..+|.++|
T Consensus 55 ~i~~dL~wlGl~~d---~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 55 AILEALKWLGLDWD---EGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred HHHHHHHHcCCCCC---cCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 67889999999766 4 455553 3445556678888888
No 147
>PLN02627 glutamyl-tRNA synthetase
Probab=96.57 E-value=0.0065 Score=74.11 Aligned_cols=94 Identities=17% Similarity=0.122 Sum_probs=66.5
Q ss_pred EEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q psy17125 22 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETI 101 (1281)
Q Consensus 22 ~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~ 101 (1281)
+.+=-.|.|||.||+||+|++++.-.+|| +..|.-++++==+|-. ....++.
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~~--------------------------R~~~e~~ 97 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDLA--------------------------RSTKESE 97 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCC--------------------------CCChHHH
Confidence 45556789999999999999999999998 5667777665333320 1123446
Q ss_pred HHHHHHHHHcCceeccCCCe---------eecCCHHHHHHHHHHHHHHHhCCcEEe
Q psy17125 102 NTQKAEFESWGVLADWEHNC---------YHTFDKEYVKNQLCQFYNLYKQDYIYR 148 (1281)
Q Consensus 102 ~~~~~~l~~lgi~~DW~R~~---------~~T~~~~~~~~v~~~f~~L~~~G~iy~ 148 (1281)
+.+.++|+.||+.+| .. |+-++ ..+.-..+..+|.++|.+|.
T Consensus 98 ~~I~~~L~WLGl~wD---egp~~gg~~gpy~QSe--R~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 98 EAVLRDLKWLGLDWD---EGPDVGGEYGPYRQSE--RNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred HHHHHHHHHcCCCCC---cCcccCCCCCCeeeec--cHHHHHHHHHHHHHcCCeee
Confidence 678999999998655 32 33332 33455677889999999885
No 148
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=96.41 E-value=0.0025 Score=73.81 Aligned_cols=63 Identities=24% Similarity=0.286 Sum_probs=27.9
Q ss_pred hcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHH
Q psy17125 792 LKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVA 871 (1281)
Q Consensus 792 l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~ 871 (1281)
+.+..|+ .-+.=.|+++..|.|||||+||+++|.+.++ -+.+++|||+++
T Consensus 261 i~g~~pP-~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~-----------------------------~~~PE~lr~l~~ 310 (360)
T PF01921_consen 261 ILGYEPP-VPFPYEFFLDKGGGKMSSSKGNGITPEEWLE-----------------------------YAPPESLRYLMA 310 (360)
T ss_dssp CC------EEEEE--EEES--------------HHHHHT-----------------------------TS-HHHHHHHHH
T ss_pred HhCCCCC-CCCCeeEEEeCCCcccccCCCCccCHHHHHH-----------------------------hcCHHHHHHHHc
Confidence 4444443 4445678887777799999999999999999 888999999999
Q ss_pred hcCCCCCccccCcc
Q psy17125 872 AHASKDPTVPIGKN 885 (1281)
Q Consensus 872 ~~~~~~~d~~f~~~ 885 (1281)
...| ...++|+.+
T Consensus 311 ~~~P-~~~~~~~~~ 323 (360)
T PF01921_consen 311 RTKP-NKAKDFSFD 323 (360)
T ss_dssp CS-T-TS-EEE--S
T ss_pred ccCC-CcceEeccC
Confidence 8666 444555544
No 149
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.011 Score=70.69 Aligned_cols=76 Identities=24% Similarity=0.268 Sum_probs=50.6
Q ss_pred hhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCC
Q psy17125 782 FMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAY 861 (1281)
Q Consensus 782 f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~y 861 (1281)
+.+....+-.+.+..|+..+ .-.++++..|+|||||+||+|++.|.++ -+
T Consensus 246 ydtg~~I~~ei~g~~pP~~~-~YE~i~lkg~~~mSsSkG~~i~~~dwle-----------------------------v~ 295 (521)
T COG1384 246 YDTGKRIAREIFGYEPPVPF-VYEWILLKGGGKMSSSKGNVISLSDWLE-----------------------------VA 295 (521)
T ss_pred hHHHHHHHHHhcCCCCCCCC-ceEEEEecCCcccccCCCcEEcHHHHHH-----------------------------hc
Confidence 33333333345554443333 3455665567999999999999999999 78
Q ss_pred chhHHHHHHHhcCCC-CCccccCcchh
Q psy17125 862 GVDVLRWWVAAHASK-DPTVPIGKNIL 887 (1281)
Q Consensus 862 GaDalR~~l~~~~~~-~~d~~f~~~~l 887 (1281)
.++.|||+++...|. ..|++|+...+
T Consensus 296 ~pE~lry~~~r~kP~r~~~~d~~~~il 322 (521)
T COG1384 296 PPEVLRYLIARTKPNRHIDFDFDLGIL 322 (521)
T ss_pred CHhHeeeeeeecCCCcceecCCCCChh
Confidence 899999999988662 23455554333
No 150
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=96.35 E-value=0.0097 Score=72.88 Aligned_cols=95 Identities=16% Similarity=0.096 Sum_probs=66.3
Q ss_pred EEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q psy17125 22 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETI 101 (1281)
Q Consensus 22 ~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~ 101 (1281)
+.+=-+|-|||.||+||+|++++.-.+||- ..|.-++++ |++.. ......+.
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~--~~G~fiLRi---eDtD~-----------------------~R~~~~~~ 56 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFARH--HGGKFILRI---EDTDQ-----------------------ERSTEEAE 56 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEe---CcCCC-----------------------CCCChHHH
Confidence 345568999999999999999999888874 456555554 33221 11133456
Q ss_pred HHHHHHHHHcCceeccCCCe--------eecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 102 NTQKAEFESWGVLADWEHNC--------YHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 102 ~~~~~~l~~lgi~~DW~R~~--------~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
+.+.++|+.||+.+| .. |+.++ +.+.-.+...+|.++|.+|.-
T Consensus 57 ~~i~~~L~wlGl~~D---e~p~~~~~gpy~QS~--r~~~y~~~~~~L~~~g~aY~C 107 (476)
T PRK01406 57 EAILEGLKWLGLDWD---EGPDGGPYGPYRQSE--RLDIYKEYAEQLLEEGKAYYC 107 (476)
T ss_pred HHHHHHHHHCCCCCC---CCCccCCCCceehhc--CHHHHHHHHHHHHHcCCeeec
Confidence 678999999999766 33 44443 335667778899999998863
No 151
>KOG4426|consensus
Probab=96.19 E-value=0.033 Score=64.12 Aligned_cols=140 Identities=14% Similarity=0.073 Sum_probs=94.2
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCch----HHHHHHHhcc------------
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLP----IELKAITSKD------------ 81 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~p----ie~~a~~~~~------------ 81 (1281)
.++-++-..-||.--.+|+||.|+.+++|.++|.....|++|++.--.-+-|++ |+.-..+--.
T Consensus 187 ~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQ 266 (656)
T KOG4426|consen 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQ 266 (656)
T ss_pred eeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHH
Confidence 466778888899999999999999999999999999999999997555555554 3321111000
Q ss_pred -------cCC-CHHHHHHHH------------------HHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHH
Q psy17125 82 -------KLL-SPLDIRKKA------------------KNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLC 135 (1281)
Q Consensus 82 -------~~~-~~~e~~~~~------------------~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~ 135 (1281)
+.. ..+++.+.+ ...|+-....+.+..++|.|+.--+ -+.-|...+..
T Consensus 267 vFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~------GESFYq~~m~~ 340 (656)
T KOG4426|consen 267 VFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKER------GESFYQDRMAE 340 (656)
T ss_pred HHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhc------chhhhhhHHHH
Confidence 001 112332221 2233445556777889999988622 23467778889
Q ss_pred HHHHHHhCCcEEeeCc-ceeecCCccccc
Q psy17125 136 QFYNLYKQDYIYRDLK-PVYWSPSSRTAL 163 (1281)
Q Consensus 136 ~f~~L~~~G~iy~~~~-~v~w~p~~~t~l 163 (1281)
+.+.|..+|++...++ .+.|-+.|.-+|
T Consensus 341 vveel~~kglvee~~Gr~i~f~~g~~IPL 369 (656)
T KOG4426|consen 341 VVEELKSKGLVEEDDGRRIMFPEGCDIPL 369 (656)
T ss_pred HHHHHhcCCceeecCCceEeccCCCCcce
Confidence 9999999999998765 344655555444
No 152
>KOG1247|consensus
Probab=96.07 E-value=0.0058 Score=69.85 Aligned_cols=71 Identities=20% Similarity=0.438 Sum_probs=60.8
Q ss_pred ccCccccCCCcEEEcccceecccccccHHHHHHhhcC----ceeeccccHHHHHHHHcc-CCceeeecccccCceec
Q psy17125 1153 SYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEG----VNFVPESAKKSLRDQIAQ-RPYWCISRQRVWGVPIP 1224 (1281)
Q Consensus 1153 ~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~----~~~~P~~~~~~~~~~~~~-~~dWciSRqr~wG~~iP 1224 (1281)
.-|-|--|..--.++.|..-|+++++|++++-+.+++ =.| ..++++...+||+. ++.-||+|.+.||+|.|
T Consensus 181 ~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~W-S~Na~~it~sWlk~gl~pRCiTRDLkWGtpVP 256 (567)
T KOG1247|consen 181 KIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDW-SQNAQNITRSWLKDGLKPRCITRDLKWGTPVP 256 (567)
T ss_pred cCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCC-ccchHHHHHHHHHccccccccccccccCCCcC
Confidence 3466888888888999999999999999998888863 346 46788899999975 67899999999999999
No 153
>KOG1147|consensus
Probab=95.68 E-value=0.033 Score=65.85 Aligned_cols=99 Identities=23% Similarity=0.337 Sum_probs=69.3
Q ss_pred EEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q psy17125 22 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETI 101 (1281)
Q Consensus 22 ~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~ 101 (1281)
+++--||-|+|.||||||...++---++ ++.+| ..++-||++.-.-| .+++-
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLNqYfa--~~~~G---~LIvRFDDTNPaKE-----------------------~~eFe 252 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLNQYFA--QAYQG---KLIVRFDDTNPAKE-----------------------NEEFE 252 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHHHHHH--HhcCc---eEEEEecCCCcchh-----------------------hHHHH
Confidence 5666799999999999999887642222 22233 34455677632111 22334
Q ss_pred HHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcce
Q psy17125 102 NTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPV 153 (1281)
Q Consensus 102 ~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v 153 (1281)
..+.+++..|||..| .. |....|-+.+...-.+|.+.|.+|..+.|+
T Consensus 253 ~~IleDl~~LgIkpd---~~--TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 253 DVILEDLSLLGIKPD---RV--TYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred HHHHHHHHHhCcCcc---ee--eechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 567899999999998 34 555567778888889999999999887664
No 154
>KOG1148|consensus
Probab=94.91 E-value=0.071 Score=63.85 Aligned_cols=95 Identities=20% Similarity=0.165 Sum_probs=58.0
Q ss_pred EEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q psy17125 22 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETI 101 (1281)
Q Consensus 22 ~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~ 101 (1281)
+++--||-|||.||||||-..-+-==+|+ .+.|+.-++ +|++ +|+ +=.+++.
T Consensus 249 V~TRFPPEPNG~LHIGHaKAInvNFgyAk--~~~G~cyLR---fDDT----------------NPE-------kEee~yf 300 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKAINVNFGYAK--AHGGVCYLR---FDDT----------------NPE-------KEEEEYF 300 (764)
T ss_pred eEEeCCCCCCceeeecchhheeechhhhh--hhCCeEEEe---cCCC----------------Ccc-------hhhHHHH
Confidence 56778999999999999865333211222 233433322 2333 342 1145567
Q ss_pred HHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 102 NTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 102 ~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
+.+++....||.. .+-.|.+..|-+.....=..|.++|++|.-
T Consensus 301 ~sI~e~V~WLG~~-----P~kvTysSDyFdqLy~~av~LIrkG~AYVc 343 (764)
T KOG1148|consen 301 ESIKEMVAWLGFE-----PYKVTYSSDYFDQLYELAVELIRKGKAYVC 343 (764)
T ss_pred HHHHHHHHHhCCC-----ceeeecchhHHHHHHHHHHHHHhcCceeEE
Confidence 7788888999976 455676555444444444569999999863
No 155
>KOG1195|consensus
Probab=94.87 E-value=0.15 Score=60.56 Aligned_cols=132 Identities=14% Similarity=0.072 Sum_probs=89.9
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHH--Hhcc--------------
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAI--TSKD-------------- 81 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~--~~~~-------------- 81 (1281)
.++-+|-..-||.+-+.|+||.|+-+++-+++...+..|+.|..+-..-+-|.++-.-|. ++.|
T Consensus 109 ~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL~ 188 (567)
T KOG1195|consen 109 GKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHLF 188 (567)
T ss_pred CceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHHH
Confidence 467888899999999999999999999999999999999999997555555544321000 0000
Q ss_pred -----------cCCCHH----HH--------HHHHH---HHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHH
Q psy17125 82 -----------KLLSPL----DI--------RKKAK---NFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLC 135 (1281)
Q Consensus 82 -----------~~~~~~----e~--------~~~~~---~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~ 135 (1281)
+..+.. ++ .+..+ +|-+-.|+...+...|||+.|| .|.-.+..+.+..+.
T Consensus 189 dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD----~y~gESqv~~e~~~~ 264 (567)
T KOG1195|consen 189 DVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFD----EYSGESQVSNEKMQE 264 (567)
T ss_pred HHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeee----eccchHHHHHHHHHH
Confidence 000000 00 01122 2334567788899999999999 444444577888899
Q ss_pred HHHHHHhCCcEEeeCcce
Q psy17125 136 QFYNLYKQDYIYRDLKPV 153 (1281)
Q Consensus 136 ~f~~L~~~G~iy~~~~~v 153 (1281)
+...+...|++...++..
T Consensus 265 ~~d~~rs~~l~~e~dG~~ 282 (567)
T KOG1195|consen 265 ALDLLRSANLTEEIDGTI 282 (567)
T ss_pred HHHHHHhcCCcccCCCcE
Confidence 999998888765544433
No 156
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=94.51 E-value=0.018 Score=68.30 Aligned_cols=107 Identities=26% Similarity=0.359 Sum_probs=63.8
Q ss_pred ceeeccceeeehhhHHHHHHHHhcCCCCCceE--EeeceeeccCCC-cccccCCCccChhhhhcccc-c-CcccccccCc
Q psy17125 770 VYMEGMDQINGWFMSSLLTSVALKHTAPFRNV--FLHGFVVDEKGA-KMSKSVGNVISAHDITQGAK-K-LPAYEKSVGN 844 (1281)
Q Consensus 770 l~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v--~~hG~vld~~G~-KMSKS~GNvv~p~dli~g~~-~-~~~msks~gn 844 (1281)
+|+.|.||. .||..++...-.+.....-.++ +.+|+++..+|+ |||+.+||+|..+++++-.. . ...|+|...
T Consensus 242 iyV~~~~q~-~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~~a~~~~~~~~~- 319 (354)
T PF00750_consen 242 IYVVGADQK-GHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVERALEIMEKNPD- 319 (354)
T ss_dssp EEEEEGGGH-HHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHHHHHHHHHHHTT-
T ss_pred EEEecCchh-hHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHHHHHHHHhcccC-
Confidence 788999997 5888777665555431111122 467999878897 99999999999999998211 0 012222211
Q ss_pred ccccccccccccCCCCCchhHHHHHHHhcCCCCCccccC
Q psy17125 845 VISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIG 883 (1281)
Q Consensus 845 ~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~ 883 (1281)
.+..+..+.+. ..|.+|+||.+++... ..++.|+
T Consensus 320 -~~~~~~~~~a~---~vg~~Ai~y~~l~~~~-~~~~~Fd 353 (354)
T PF00750_consen 320 -LSEEEREEIAE---QVGVGAIRYFDLSQKR-NKDYVFD 353 (354)
T ss_dssp -CTHCHHHHHHH---HHHHHHHHHHHHSS-T-TS-EEEE
T ss_pred -CChhhHHHHHH---HhhhhHHHHHHHhccC-CCCceec
Confidence 22111111011 5789999999998876 6777775
No 157
>KOG1149|consensus
Probab=94.51 E-value=0.19 Score=58.55 Aligned_cols=130 Identities=14% Similarity=0.100 Sum_probs=80.6
Q ss_pred CCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Q psy17125 26 GPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQK 105 (1281)
Q Consensus 26 ~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 105 (1281)
--|-|||.||+|-+||+..-=++|| ...|.-++++=-+|-. ..+...-+.+.
T Consensus 38 FAPSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq~--------------------------R~v~gs~e~i~ 89 (524)
T KOG1149|consen 38 FAPSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQK--------------------------RLIRGSEEAIY 89 (524)
T ss_pred ecCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEecccccc--------------------------ccccchHHHHH
Confidence 3588999999999999988877776 4567777766444421 11222234567
Q ss_pred HHHHHcCceeccCCCeeec--CCH----HHHHHHHHHHHHHHhCCcEEee----------------Cccee-ecCCcccc
Q psy17125 106 AEFESWGVLADWEHNCYHT--FDK----EYVKNQLCQFYNLYKQDYIYRD----------------LKPVY-WSPSSRTA 162 (1281)
Q Consensus 106 ~~l~~lgi~~DW~R~~~~T--~~~----~~~~~v~~~f~~L~~~G~iy~~----------------~~~v~-w~p~~~t~ 162 (1281)
++|+.+|+.+|-. +..- .-| +-.+.-...-.+|.+.|.+|+- .+.++ |+-.|. -
T Consensus 90 ~~L~w~nl~~DEg--P~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca-~ 166 (524)
T KOG1149|consen 90 EDLKWANLDWDEG--PGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCA-N 166 (524)
T ss_pred HHHHhcCCCcccC--CCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhc-c
Confidence 8899999988833 2111 111 1223344556788999999983 23333 554443 3
Q ss_pred ccccccccCCCCcCccEEEEEEecc
Q psy17125 163 LAESELEYKPDHVSKSIYLKIKLNQ 187 (1281)
Q Consensus 163 lad~ev~~~~~~~~~~~~vkf~l~~ 187 (1281)
|+++|++.+. .+++-..|+|++.+
T Consensus 167 ls~~ei~~~l-akg~pf~iRFrl~~ 190 (524)
T KOG1149|consen 167 LSDAEIKQKL-AKGTPFTIRFRLPK 190 (524)
T ss_pred cCHHHHHHHH-hcCCCeeEEEecCC
Confidence 6777775333 45566778898865
No 158
>KOG0436|consensus
Probab=93.86 E-value=0.045 Score=63.04 Aligned_cols=141 Identities=25% Similarity=0.331 Sum_probs=134.1
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHH
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKN 95 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~ 95 (1281)
++.+.|+++.|..|||..+||||+++.+++|+++||+|++|..|+|..|+|+||++|+.+|..+| .+| .+
T Consensus 36 ~~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG---~~P-------~e 105 (578)
T KOG0436|consen 36 DEGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNG---RNP-------PE 105 (578)
T ss_pred cCCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcC---CCh-------HH
Confidence 34568999999999999999999999999999999999999999999999999999999998887 788 56
Q ss_pred HHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccc
Q psy17125 96 FALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELE 169 (1281)
Q Consensus 96 ~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~ 169 (1281)
+|++..+.+...++.+||.++ .+++|+||.|.+.|++++..+.++|+||++.+..|||.+|+|.+.+++|.
T Consensus 106 ~cDr~s~~f~qL~k~~gi~yt---~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~ 176 (578)
T KOG0436|consen 106 LCDRISQSFRQLWKDAGIAYT---KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVL 176 (578)
T ss_pred HHhhhhHHHHHHHHHhCcchh---heeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHh
Confidence 699999999999999999999 79999999999999999999999999999999999999999999999985
No 159
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=93.85 E-value=0.73 Score=47.92 Aligned_cols=135 Identities=13% Similarity=0.143 Sum_probs=80.0
Q ss_pred CCchhHHHHHHHhcCCCCCccccCcchhccc-hH-------HHHHHHHHHHHHHHhhcCCCCCCC--CcCcHHHHHHHHH
Q psy17125 860 AYGVDVLRWWVAAHASKDPTVPIGKNILNSS-QD-------DVQKIRSSLRYLLGVLHNHSESTG--SISRYVDVYMLKR 929 (1281)
Q Consensus 860 ~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~-~~-------~~~kl~n~~r~~~~~l~~~~~~~~--~~~~~~d~~il~~ 929 (1281)
..|.|++||++++..+ ..++.|+.+.+... .+ -..|+.|+++-..... ....... .-....++.++..
T Consensus 2 ~i~~~a~~~~~l~~~~-~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~-~~~~~~~~~ll~~~~E~~L~~~ 79 (156)
T cd07956 2 EVGVGAVKYQDLSNKR-IKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETI-EAEADADLSLLPEPDERDLILL 79 (156)
T ss_pred ccchhHHHHHHHhcCC-CCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcC-ccccccchhhcCCHHHHHHHHH
Confidence 5689999999999887 67888887764321 11 2244444444321000 0000000 0123456678888
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHH---HHHHHHHHHHHHHHHHHHhc
Q psy17125 930 LCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEA---RLSGLHTLHNIFHVLLRTVA 1002 (1281)
Q Consensus 930 l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~---r~~~~~~l~~~l~~l~~lLa 1002 (1281)
+..+...+..++++.+++.+++.+.++. ..+.+|| +.+ .+..+ +... |...+..+..++...+.+|.
T Consensus 80 l~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~ff-d~v--~V~~~--~~~i~~nRL~Ll~~v~~vl~~~l~llg 149 (156)
T cd07956 80 LAKFPEVVKNAAETLEPHTIATYLFDLA-HAFSKFY-NAC--PVLGA--EEELRNARLALVAAARQVLANGLDLLG 149 (156)
T ss_pred HHHhHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHH-hcC--cccCC--CHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888899999999999999999988 6776765 322 22222 2222 33334445555566665553
No 160
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.54 E-value=0.11 Score=53.15 Aligned_cols=51 Identities=25% Similarity=0.212 Sum_probs=37.5
Q ss_pred CccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccC
Q psy17125 767 PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSV 819 (1281)
Q Consensus 767 p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~ 819 (1281)
+.++++.|+||.. |+.........+....+ ...+.+|++...+|+|||||+
T Consensus 93 ~~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~-p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 93 ECDIHLGGSDQLG-HIELGLELLKKAGGPAR-PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred CcEEEEechhHHH-HHHHHHHHHHHhCCCCC-ceEEEeCCeECCCCCcCCCCC
Confidence 3689999999997 76666555555544333 356677999877889999995
No 161
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=91.08 E-value=0.27 Score=56.10 Aligned_cols=57 Identities=16% Similarity=0.042 Sum_probs=36.9
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcC-CCCCceEEeeceeeccCCCcccccCCCccCh
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKH-TAPFRNVFLHGFVVDEKGAKMSKSVGNVISA 825 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~-~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p 825 (1281)
+.+++...|.||.. |+....=.+--+.. ..| .-+++.++.+.+|.|||||.+|.++.
T Consensus 152 ~~~~~vp~G~DQ~~-~i~l~rdla~r~n~~~~p--~~l~~p~l~~l~G~KMSKS~~~~i~l 209 (273)
T cd00395 152 EGCDIQPGGSDQWG-NITLGRELARRFNGFTIA--EGLTIPLVTKLDGPKFGKSESGPKWL 209 (273)
T ss_pred cCCcEEEecHHHHH-HHHHHHHHHHHhCCCCCC--eEEeeccccCCCCCcCCCCCCCCccc
Confidence 56689999999985 33322211112221 234 33455888899999999999998743
No 162
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=91.01 E-value=0.18 Score=60.80 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=39.8
Q ss_pred CCCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhh
Q psy17125 765 DKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHD 827 (1281)
Q Consensus 765 ~~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~d 827 (1281)
.+.+|+...|.||..+. ....=..--+....| -.+++.++...+|.|||||.||.|+..+
T Consensus 184 ~~~~~iq~gG~DQ~~ni-~~grdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d 243 (410)
T PRK13354 184 KEDVDLQIGGTDQWGNI-LMGRDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDP 243 (410)
T ss_pred cCCCCEEEecHHHHHHH-HHHHHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccC
Confidence 36889999999998533 222211112223334 3456777778899999999999987554
No 163
>PLN02486 aminoacyl-tRNA ligase
Probab=90.76 E-value=2 Score=51.17 Aligned_cols=83 Identities=18% Similarity=0.098 Sum_probs=50.6
Q ss_pred HHHcCCCCcEEEEcCCCCCCC-cCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHH
Q psy17125 12 REALNGKPEFILHDGPPYANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIR 90 (1281)
Q Consensus 12 ~~~~~~~~~f~i~~~pP~~nG-~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~ 90 (1281)
.++...+++|++..|. -|+| .+||||+.. ...+..+++..|..+....+ |. +..+.+. .+.+++
T Consensus 65 l~~~e~~~~~~vYtG~-~PSg~~lHlGHlv~---~~~~~~lQ~~~~~~~~I~ia-D~-----e~~~~~~----~~~e~i- 129 (383)
T PLN02486 65 LDAYEKGEKFYLYTGR-GPSSEALHLGHLIP---FMFTKYLQDAFKVPLVIQLT-DD-----EKFLWKN----LSVEES- 129 (383)
T ss_pred HHHHhcCCCeEEEeCC-CCCCccccHHHHHH---HHHHHHHHHhCCCeEEEEec-CH-----HHHhhcC----CCHHHH-
Confidence 3333455678888776 5788 599999544 44455666666776666644 43 4333332 577666
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCceec
Q psy17125 91 KKAKNFALETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~lgi~~D 116 (1281)
++++.+++. ++.++|+..+
T Consensus 130 ---~~~~~en~~----~iiA~G~dp~ 148 (383)
T PLN02486 130 ---QRLARENAK----DIIACGFDVE 148 (383)
T ss_pred ---HHHHHHHHH----HHHHhCCCCc
Confidence 556665544 4456887765
No 164
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=88.78 E-value=0.24 Score=59.69 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=39.8
Q ss_pred CCCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhh
Q psy17125 765 DKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHD 827 (1281)
Q Consensus 765 ~~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~d 827 (1281)
.+.+++...|.||.. |+....=..--+....+| .+...++.+.+|+|||||.||.|+..+
T Consensus 186 ~~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d 245 (408)
T PRK05912 186 RYGCDLQLGGSDQWG-NILSGRDLQRRYGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDE 245 (408)
T ss_pred cCCCCEEeccHHHHH-HHHHHHHHHHHhCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCC
Confidence 368999999999985 443322221122222332 245667778899999999999997655
No 165
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=88.30 E-value=0.54 Score=53.60 Aligned_cols=59 Identities=24% Similarity=0.250 Sum_probs=39.0
Q ss_pred Cccceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhc
Q psy17125 767 PAHVYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQ 830 (1281)
Q Consensus 767 p~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~ 830 (1281)
-.|+...|.||...+ +.+-+... +....| -.+.|.++...+|+|||||.+|.++ ..+.+
T Consensus 151 ~~~l~~~G~DQ~~~i~~~rd~a~r--~~~~~~--~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~d 210 (269)
T cd00805 151 DVDLQLGGSDQRGNITLGRDLIRK--LGYKKV--VGLTTPLLTGLDGGKMSKSEGNAIW-DPVLD 210 (269)
T ss_pred hCCeeEecHHHHHHHHHHHHHHHH--hCCCCc--EEEeeccccCCCCCcccCCCCCccc-ccCCC
Confidence 348899999998533 22222222 222334 3467889988999999999999986 44433
No 166
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=87.30 E-value=0.47 Score=54.82 Aligned_cols=62 Identities=26% Similarity=0.207 Sum_probs=37.8
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeeccCCC-cccccCCC-ccChhh
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDEKGA-KMSKSVGN-VISAHD 827 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~-KMSKS~GN-vv~p~d 827 (1281)
+-+|+...|.||.... +.+-+..........|-...+++.++...+|. |||||.+| .|+..|
T Consensus 148 l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d 212 (292)
T PF00579_consen 148 LKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDD 212 (292)
T ss_dssp TTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTT
T ss_pred eccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEec
Confidence 3457889999998643 22223222222211222356667788888999 99999999 665443
No 167
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=87.16 E-value=0.055 Score=57.93 Aligned_cols=51 Identities=24% Similarity=0.501 Sum_probs=41.5
Q ss_pred chhheeeeecccccccccccceeeeeeehhcccccCcccccchhhhhccCCC
Q psy17125 1038 SIAKRILYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPS 1089 (1281)
Q Consensus 1038 ~i~kd~~y~~~vngk~R~s~q~~l~~~~~~~~~~~~pilp~~aee~~~~~~~ 1089 (1281)
+..|++.|+.. ++..|++.+.++..++..++++++|++||+|||+|.+++.
T Consensus 92 e~~K~~~~~~~-~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~ 142 (183)
T cd07961 92 RRNRKRFWGEE-GDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRR 142 (183)
T ss_pred hhchHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 45567777654 4455677888999999999999999999999999999864
No 168
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=86.86 E-value=2.5 Score=49.63 Aligned_cols=57 Identities=28% Similarity=0.312 Sum_probs=33.2
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHhc----CCCCCceEEeece---eeccCCCcccccCCC-ccC
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVALK----HTAPFRNVFLHGF---VVDEKGAKMSKSVGN-VIS 824 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l~----~~~Pf~~v~~hG~---vld~~G~KMSKS~GN-vv~ 824 (1281)
+-+|+...|.||...+ +.+-+.....-. ...| . .+.|.+ +...+|+|||||.+| .|.
T Consensus 138 ~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P-~-~l~~~~~~~l~gl~~~KMSKS~~~s~I~ 203 (328)
T TIGR00233 138 YQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKP-E-SLISKFFPRLMGLSGKKMSKSDPNSAIF 203 (328)
T ss_pred cCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCC-h-hhhccccCCCCCCCCCcCCCCCCCCeEe
Confidence 4578899999997543 333333332210 1234 2 334444 445567899999997 663
No 169
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=85.69 E-value=0.49 Score=55.40 Aligned_cols=58 Identities=33% Similarity=0.291 Sum_probs=36.0
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHh--c--CCCCCceEE--eeceeeccCCCcccccCCCccC
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVAL--K--HTAPFRNVF--LHGFVVDEKGAKMSKSVGNVIS 824 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l--~--~~~Pf~~v~--~hG~vld~~G~KMSKS~GNvv~ 824 (1281)
+.+|+...|.||...+ +.+-+.....- . ...| ..++ .+.++...+|+|||||.+|.|.
T Consensus 148 ~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P-~~~~~~~~~~l~gLdg~KMSKS~~n~I~ 212 (332)
T PRK12556 148 FQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP-EYVIQEEGAILPGLDGRKMSKSYGNVIP 212 (332)
T ss_pred ccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc-eeccccccccccCCCCCCCCCCCCCccc
Confidence 5678889999998644 33433322210 0 1234 3332 3566667789999999999873
No 170
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=84.81 E-value=2.8 Score=46.36 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=35.7
Q ss_pred ceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCC
Q psy17125 799 RNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHAS 875 (1281)
Q Consensus 799 ~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~ 875 (1281)
.....++.+++.+|+|||||.++. +...+.+ . .|-+++++-|++..+.
T Consensus 138 P~~~H~pll~~~~g~KLSKr~~~~-~i~~~r~-------------------------~---G~~p~ai~~~l~~lG~ 185 (230)
T cd00418 138 PRFYHFPRLLLEDGTKLSKRKLNT-TLRALRR-------------------------R---GYLPEALRNYLALIGW 185 (230)
T ss_pred CeEEEeeeeeCCCCCCccCcCCCc-CHHHHHH-------------------------C---CCcHHHHHHHHHHcCC
Confidence 366777889899999999999983 3444433 0 4668999999987764
No 171
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=84.77 E-value=1.6 Score=54.42 Aligned_cols=90 Identities=10% Similarity=0.050 Sum_probs=55.2
Q ss_pred Cccceeeccceee---ehhhHHHHHHH---HhcCCCCCceEEeeceeeccCCCcccccCCC-------c--------cCh
Q psy17125 767 PAHVYMEGMDQIN---GWFMSSLLTSV---ALKHTAPFRNVFLHGFVVDEKGAKMSKSVGN-------V--------ISA 825 (1281)
Q Consensus 767 p~dl~~~G~Dii~---~wf~~~l~~~~---~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GN-------v--------v~p 825 (1281)
++|-+.+|.+++. -|..+...... ++. ++....+.+|.+. .+|.|||||+.. + .+.
T Consensus 288 ~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg--~~~P~~~H~~~L~-~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl 364 (567)
T PRK04156 288 AVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG--WEYPETIHYGRLK-IEGFVLSTSKIRKGIEEGEYSGWDDPRLPTL 364 (567)
T ss_pred eeeecCCCCCeEEcccccccChHHHHHHHHHcC--CCCceEEEcceec-CCCceeecccchhccccCccccccCCchHHH
Confidence 5677777777764 23332221111 122 2324566668775 689999999833 1 111
Q ss_pred hhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchh
Q psy17125 826 HDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNIL 887 (1281)
Q Consensus 826 ~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l 887 (1281)
..+.. . -|-++++|.|++..+....|..|+.+.|
T Consensus 365 ~~lrr-------------------------r---G~~PeAi~~fl~~lG~s~~~~~~~~~~L 398 (567)
T PRK04156 365 RALRR-------------------------R---GILPEAIRELIIEVGVKETDATISWENL 398 (567)
T ss_pred HHHHH-------------------------c---CCCHHHHHHHHHHhCCCCCCcccCHHHH
Confidence 22222 1 4679999999999988778888887764
No 172
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=84.11 E-value=4.6 Score=45.07 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=47.8
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcc
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNV 845 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~ 845 (1281)
+-++..+-|.|++. +........-++....| ....++.+++.+|.||||+.|+ .+...+.+
T Consensus 117 ~~ithViRG~D~~~-~t~~q~~l~~aLg~~~p--~~~h~pll~~~~g~KLSKR~~~-~~l~~lr~--------------- 177 (239)
T cd00808 117 MGITHVIRGEEHLS-STPKQILLYEALGWEPP--KFAHLPLILNPDGKKLSKRKGD-TSISDYRE--------------- 177 (239)
T ss_pred cCCCEEEEChhhhh-ChHHHHHHHHHcCCCCC--ceEeeccccCCCCCcccCCCCC-ccHHHHHH---------------
Confidence 34455666777764 23333333333433333 5566677778999999999999 33444433
Q ss_pred cccccccccccCCCCCchhHHHHHHHhcCC
Q psy17125 846 ISAHDITQGAKKLPAYGVDVLRWWVAAHAS 875 (1281)
Q Consensus 846 ~~~~~~~~~~~~i~~yGaDalR~~l~~~~~ 875 (1281)
. -+-+.+++-|++..+.
T Consensus 178 ----------~---G~~p~ai~~~l~~lG~ 194 (239)
T cd00808 178 ----------E---GYLPEALLNYLALLGW 194 (239)
T ss_pred ----------C---CCCHHHHHHHHHHcCC
Confidence 0 3558899988887654
No 173
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=82.99 E-value=28 Score=43.08 Aligned_cols=110 Identities=17% Similarity=0.116 Sum_probs=58.9
Q ss_pred CccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcc---cccccC
Q psy17125 767 PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPA---YEKSVG 843 (1281)
Q Consensus 767 p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~---msks~g 843 (1281)
-.+..+-|.|++. +....+...-++.... .....+.++++.+|.||||.+| .++..++.+-+-..++ +-.+.|
T Consensus 197 ~ithvIrG~d~~~-~t~~~~~l~~aLg~~~--p~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG 272 (470)
T TIGR00464 197 KITHVIRGEDHIS-NTPKQILIYQALGWKI--PVFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLG 272 (470)
T ss_pred CCCEEEECchhhc-CHHHHHHHHHHcCCCC--CeEEEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcC
Confidence 3455566777764 3333333333443222 3566667777889999999998 7778888772100000 001222
Q ss_pred cccc-cccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhcc
Q psy17125 844 NVIS-AHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNS 889 (1281)
Q Consensus 844 n~~~-~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~ 889 (1281)
.... ..+ ..--.+++|++.+.... .+++.|+.+.+..
T Consensus 273 ~~~~~~~e--------~~~~~~~i~~f~l~~~~-~~~~~fd~~kL~~ 310 (470)
T TIGR00464 273 WSPPDDQE--------FFSLEELIEIFSLNRVS-KSPAKFDWKKLQW 310 (470)
T ss_pred CCCCCccc--------cCCHHHHHHhcCcccCC-CCCCeecHHHHHH
Confidence 2111 000 01124778877665444 4667787776544
No 174
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=81.85 E-value=1.1 Score=52.53 Aligned_cols=57 Identities=28% Similarity=0.341 Sum_probs=38.0
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeeccCCC--cccccC-CCccChh
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDEKGA--KMSKSV-GNVISAH 826 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~--KMSKS~-GNvv~p~ 826 (1281)
+.+|+...|.||.... +.+-+... +....| ..+.|.++.+.+|. |||||. +|.|...
T Consensus 167 ~~ad~vpvG~DQ~~h~~l~Rdia~~--~n~~~p--~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~ 227 (329)
T PRK08560 167 LDVDIAVGGMDQRKIHMLAREVLPK--LGYKKP--VCIHTPLLTGLDGGGIKMSKSKPGSAIFVH 227 (329)
T ss_pred hCCCEEEechhHHHHHHHHHHhhHh--cCCCCc--eEEEcCccCCCCCCCCCCcCCCCCCeeccc
Confidence 5688999999998532 22222221 222344 44568888888887 999999 8888643
No 175
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.17 E-value=3.5 Score=49.70 Aligned_cols=123 Identities=22% Similarity=0.211 Sum_probs=107.3
Q ss_pred cEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q psy17125 20 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALE 99 (1281)
Q Consensus 20 ~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~ 99 (1281)
+-|++ =|+|+...||||||+++..|++.||++..||.|.|+..+.+...+|-.+|.+.+ .+. ++++++
T Consensus 24 ~mYvC--GpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g---~~~-------~ev~~~ 91 (464)
T COG0215 24 KMYVC--GPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEG---LSI-------REVAER 91 (464)
T ss_pred EEEec--CCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhC---CCH-------HHHHHH
Confidence 34444 478999999999999999999999999999999999999999999999999987 566 677999
Q ss_pred HHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee-CcceeecCC
Q psy17125 100 TINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD-LKPVYWSPS 158 (1281)
Q Consensus 100 ~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~v~w~p~ 158 (1281)
+++.+.+++.+|||..- ...+.-.+|...+.++..+|.++|++|.. .+.|||+..
T Consensus 92 ~i~~f~~D~~aL~v~~p----~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~ 147 (464)
T COG0215 92 YIAAFFEDMDALNVLPP----DIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVS 147 (464)
T ss_pred HHHHHHHHHHHhCCCCC----cccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecc
Confidence 99999999999999631 23345558999999999999999999998 678998864
No 176
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=80.98 E-value=1.3 Score=52.98 Aligned_cols=56 Identities=21% Similarity=0.168 Sum_probs=34.5
Q ss_pred CccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccCh
Q psy17125 767 PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISA 825 (1281)
Q Consensus 767 p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p 825 (1281)
-+|+...|.||. +|+.......--+....+| .+...++...+|.|||||.||.|+.
T Consensus 177 ~~di~~gG~DQ~-~ni~~g~dLar~~~~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l 232 (377)
T TIGR00234 177 NVDLQIGGSDQW-GNIRKGRDLIRRNLPSLGF--GLTVPLLTPADGEKMGKSGGGAVSL 232 (377)
T ss_pred cCCeeEecchhH-HHHHHHHHHHHHhcCCCce--eeceeeecCCCCCCccCCCCCcccC
Confidence 467899999997 3444443333223233332 2334455556799999999998754
No 177
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=78.63 E-value=1.3 Score=53.19 Aligned_cols=58 Identities=29% Similarity=0.264 Sum_probs=35.0
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHH-hc----CCCCCceEEe--eceeeccCCCcccccCCCccC
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVA-LK----HTAPFRNVFL--HGFVVDEKGAKMSKSVGNVIS 824 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~-l~----~~~Pf~~v~~--hG~vld~~G~KMSKS~GNvv~ 824 (1281)
|.+|+.-.|.||.... +.+-+..... .. ...| ..++. +..+...+|+|||||.+|.|.
T Consensus 147 y~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~P-e~~i~~~~~~I~gLdg~KMSKS~~n~I~ 212 (431)
T PRK12284 147 FNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLP-EAVIEESVATLPGLDGRKMSKSYDNTIP 212 (431)
T ss_pred cCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCC-ccccccccccccCCCCccccCCCCCEee
Confidence 5578888999998533 3333322211 01 1234 33332 356777789999999999884
No 178
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=77.45 E-value=0.19 Score=51.87 Aligned_cols=48 Identities=35% Similarity=0.627 Sum_probs=39.2
Q ss_pred chhheeeeecccccccccccceeeeeeehhcccccCcccccchhhhhccC
Q psy17125 1038 SIAKRILYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1087 (1281)
Q Consensus 1038 ~i~kd~~y~~~vngk~R~s~q~~l~~~~~~~~~~~~pilp~~aee~~~~~ 1087 (1281)
+..++..|+...+.. |. .+.++..++..++.+++|++||+|||+|+++
T Consensus 45 ~~~k~~~~~~~~~~~-~~-~~~~l~~~l~~~~~ll~P~~P~~aEeiw~~l 92 (153)
T PF08264_consen 45 ELIKPWLYCKDDDES-RE-AQYTLYEILKILLILLSPFMPFIAEEIWQRL 92 (153)
T ss_dssp HHHHHHHCTTTTCHH-HH-HHHHHHHHHHHHHHHHTTTSHHHHHHHHHHC
T ss_pred HhcccchhcccchhH-HH-HHHHHHHHHHHHhhccCCCCcHHHHHHHHHh
Confidence 456666666655555 56 8888999999999999999999999999877
No 179
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=76.90 E-value=1.3 Score=52.52 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=35.3
Q ss_pred CCccceeeccceeeeh-hhHHHHHHH--HhcCCCCCceEEeeceeeccCCCcccccC-CCccCh
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSV--ALKHTAPFRNVFLHGFVVDEKGAKMSKSV-GNVISA 825 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~--~l~~~~Pf~~v~~hG~vld~~G~KMSKS~-GNvv~p 825 (1281)
+-.++...|.||...+ +.+-+.... ......| ..+.|.++...+|.|||||. +|.|..
T Consensus 202 ~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P--~~l~~~~lpgL~G~KMSkS~~~s~I~L 263 (368)
T PRK12285 202 PKPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKP--SSTYHKFMPGLTGGKMSSSKPESAIYL 263 (368)
T ss_pred CCceEEEeccchHHHHHHHHHHHHHHhhhcCCCCc--hhHhhhcccCCCCCcCCCCCCCCeeec
Confidence 4457888999997533 333333322 0112234 33446677788899999998 567743
No 180
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=75.91 E-value=18 Score=43.21 Aligned_cols=78 Identities=23% Similarity=0.161 Sum_probs=47.9
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHH
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKN 95 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~ 95 (1281)
..+++|++..|. -|+|.+||||... -..+.++++ .|++|.+..+=++. . ..+ ..+++++ ++
T Consensus 62 ~~~~~~~iytG~-~PSG~lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD~ha-~-----~~~----~~~~e~~----~~ 122 (368)
T PRK12285 62 RNGKPFAVYTGF-MPSGPMHIGHKMV---FDELKWHQE-FGANVYIPIADDEA-Y-----AAR----GLSWEET----RE 122 (368)
T ss_pred hcCCCeEEEEcc-CCCCCccHHHHHH---HHHHHHHHh-cCCCEEEEecchHH-H-----hcC----CCCHHHH----HH
Confidence 344566666665 3569999999753 344666676 78888776654432 1 111 1467665 55
Q ss_pred HHHHHHHHHHHHHHHcCceec
Q psy17125 96 FALETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 96 ~~~~~~~~~~~~l~~lgi~~D 116 (1281)
++.++ ..++.++|+..+
T Consensus 123 ~~~~~----~~~~lA~G~Dp~ 139 (368)
T PRK12285 123 WAYEY----ILDLIALGFDPD 139 (368)
T ss_pred HHHHH----HHHHHHhCCCcc
Confidence 55544 456778998766
No 181
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=74.94 E-value=2.1 Score=49.27 Aligned_cols=57 Identities=23% Similarity=0.177 Sum_probs=35.5
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHhc----CCCCCceEEeec--eeeccCC-CcccccCCC-ccC
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVALK----HTAPFRNVFLHG--FVVDEKG-AKMSKSVGN-VIS 824 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l~----~~~Pf~~v~~hG--~vld~~G-~KMSKS~GN-vv~ 824 (1281)
|-+++.--|.||-..+ +.+-+....... -.+| ..+.|. .+.+.+| .|||||.+| +|.
T Consensus 144 ~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P--~~~~~~~~~i~gL~g~~KMSkS~~ns~I~ 209 (314)
T COG0180 144 YQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLP--EALISKVARLPGLDGPGKMSKSDPNSAIF 209 (314)
T ss_pred ccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCc--cccccCCCcccCCCCCCcccccCCCCeee
Confidence 3456777899997533 344443332211 1233 455566 8888888 899999999 664
No 182
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=74.58 E-value=0.45 Score=50.72 Aligned_cols=51 Identities=45% Similarity=0.737 Sum_probs=39.0
Q ss_pred hhheeeeecccccccccccceeeeeeehhcccccCcccccchhhhhccCCC
Q psy17125 1039 IAKRILYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPS 1089 (1281)
Q Consensus 1039 i~kd~~y~~~vngk~R~s~q~~l~~~~~~~~~~~~pilp~~aee~~~~~~~ 1089 (1281)
..+++.|+...++..|...+.+++.++..++++++|++||+++|+|..++.
T Consensus 91 ~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~ 141 (180)
T cd07960 91 IIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPG 141 (180)
T ss_pred hcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccc
Confidence 445666654434444556777888889999999999999999999999853
No 183
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=72.77 E-value=5.8 Score=45.34 Aligned_cols=71 Identities=21% Similarity=0.300 Sum_probs=40.2
Q ss_pred CCCC-cCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCC--CchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Q psy17125 29 YANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCH--GLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQK 105 (1281)
Q Consensus 29 ~~nG-~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~--G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 105 (1281)
-||| .||+||..+ + ..+.++++ .|+++.+..|=.++ |.|.-...++.. .+++++ .++...+.
T Consensus 7 ~PTg~~lHlGh~~~-l--~~~~~lq~-~g~~~~~~I~d~~a~~~d~sg~~~~r~~---~~~~~i--------~~n~~~~~ 71 (273)
T cd00395 7 DPTADSLHIGHLIG-L--LTFRRFQH-AGHRPIFLIGGQTGIIGDPSGKKSERTL---NDPEEV--------RQNIRRIA 71 (273)
T ss_pred cCCCCCccHHHHHH-H--HHHHHHHH-CCCCEEEEEecCceeeCCCCCccccccC---CCHHHH--------HHHHHHHH
Confidence 3789 699999887 3 23556655 68888886652221 222211111111 345433 34455567
Q ss_pred HHHHHcCce
Q psy17125 106 AEFESWGVL 114 (1281)
Q Consensus 106 ~~l~~lgi~ 114 (1281)
+++.++|+.
T Consensus 72 ~~~~a~g~d 80 (273)
T cd00395 72 AQYLAVGIF 80 (273)
T ss_pred HHHHHhcCc
Confidence 788888875
No 184
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=72.39 E-value=4.8 Score=45.92 Aligned_cols=71 Identities=20% Similarity=0.084 Sum_probs=42.5
Q ss_pred CCCC-cCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCC--CchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Q psy17125 29 YANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCH--GLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQK 105 (1281)
Q Consensus 29 ~~nG-~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~--G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 105 (1281)
-||| .+|+||.... -.+.|++++ |++|.+..|=.++ |.|.-+..++. ..+++++ .++...+.
T Consensus 8 ~PTg~~lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~---~~~~~~i--------~~~~~~~~ 72 (269)
T cd00805 8 DPTAPSLHLGHLVPL---MKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERK---LLDLELI--------RENAKYYK 72 (269)
T ss_pred CCCCCcccHHHHHHH---HHHHHHHHC-CCeEEEEECCCeeecCCCCCcccccc---CCCHHHH--------HHHHHHHH
Confidence 4789 8999998853 357788876 9888777664333 22321111111 2466554 33344556
Q ss_pred HHHHHcCce
Q psy17125 106 AEFESWGVL 114 (1281)
Q Consensus 106 ~~l~~lgi~ 114 (1281)
.++.++|..
T Consensus 73 ~~~~a~g~~ 81 (269)
T cd00805 73 KQLKAILDF 81 (269)
T ss_pred HHHHHHHcc
Confidence 777888875
No 185
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=71.89 E-value=2.5 Score=49.67 Aligned_cols=58 Identities=29% Similarity=0.277 Sum_probs=35.4
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHh-cCC----CCCceEEe-eceeeccCC-CcccccCCCccC
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVAL-KHT----APFRNVFL-HGFVVDEKG-AKMSKSVGNVIS 824 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l-~~~----~Pf~~v~~-hG~vld~~G-~KMSKS~GNvv~ 824 (1281)
+.+|+...|.||...+ +.+-+...... .++ .| +.++. |.++.+.+| .|||||.+|.|.
T Consensus 141 ~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p-~~~~~~~~~i~~L~g~~KMSKS~~~~I~ 206 (333)
T PRK12282 141 FKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEP-EALLPEAGRLPGLDGKAKMSKSLGNAIY 206 (333)
T ss_pred hCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCc-hhcccCCCcccCCCCCCcCCCCCCCeee
Confidence 5678999999998644 34444333221 111 12 22222 456666676 799999999874
No 186
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=71.43 E-value=4.9 Score=44.13 Aligned_cols=50 Identities=30% Similarity=0.330 Sum_probs=34.0
Q ss_pred ceeeccceeeehhhHHHHHHHHhcCC-CCCceEEeeceeeccCCCcccccCC
Q psy17125 770 VYMEGMDQINGWFMSSLLTSVALKHT-APFRNVFLHGFVVDEKGAKMSKSVG 820 (1281)
Q Consensus 770 l~~~G~Dii~~wf~~~l~~~~~l~~~-~Pf~~v~~hG~vld~~G~KMSKS~G 820 (1281)
+++.|.||. .|+........++... .|--..+.+|+|+..+|.||||..|
T Consensus 162 i~v~g~~~~-~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 162 IYVVGADHH-GHFKRLFAALELLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEECCCHH-HHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 568888887 4676666555555433 2212345669999777999999976
No 187
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=69.93 E-value=3.7 Score=47.08 Aligned_cols=58 Identities=26% Similarity=0.248 Sum_probs=34.7
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHhc----CCCCCceEEee--ceeeccCC--CcccccCC-CccCh
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVALK----HTAPFRNVFLH--GFVVDEKG--AKMSKSVG-NVISA 825 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l~----~~~Pf~~v~~h--G~vld~~G--~KMSKS~G-Nvv~p 825 (1281)
+.+++...|.||.... +.+-+.....-. ...| ..+.| .++...+| .|||||.+ |.|..
T Consensus 136 ~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P--~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L 203 (280)
T cd00806 136 YKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKP--AALLSKGAFLPGLQGPSKKMSKSDPNNAIFL 203 (280)
T ss_pred ccCCEEeeccccHHHHHHHHHHHHHhccccccccCCC--eeeccCCCccccCCCCCCcccCCCCCCeEEe
Confidence 3457788899997533 223332222110 1233 45566 77776766 59999999 88754
No 188
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=69.89 E-value=8.5 Score=44.19 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=40.0
Q ss_pred CCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy17125 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEF 108 (1281)
Q Consensus 29 ~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l 108 (1281)
-|||.|||||..+.+.. +.++++. |+++.+..+= .|.+- +...+++++ ++++ ..+.+++
T Consensus 7 ~PTG~lHLG~~~~al~~--~~~lQ~a-g~~~~~~IaD-~ha~t---------~~~~~~~~~----~~~~----~~~~~~~ 65 (280)
T cd00806 7 QPSGSLHLGHYLGAFRF--WVWLQEA-GYELFFFIAD-LHALT---------VKQLDPEEL----RQNT----RENAKDY 65 (280)
T ss_pred CCCchhhHHHHHHHHHH--HHHHHhC-CCCEEEEecc-hHHHh---------CCCCCHHHH----HHHH----HHHHHHH
Confidence 47899999999986664 4555554 8887766542 22221 111356554 3333 3456677
Q ss_pred HHcCceec
Q psy17125 109 ESWGVLAD 116 (1281)
Q Consensus 109 ~~lgi~~D 116 (1281)
.++|+..+
T Consensus 66 lA~G~dp~ 73 (280)
T cd00806 66 LACGLDPE 73 (280)
T ss_pred HHcCCCcc
Confidence 78887543
No 189
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=68.58 E-value=3.7 Score=49.04 Aligned_cols=56 Identities=25% Similarity=0.174 Sum_probs=33.6
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeecc-CC-CcccccCCC-ccC
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDE-KG-AKMSKSVGN-VIS 824 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~-~G-~KMSKS~GN-vv~ 824 (1281)
+.+|+...|.||-.++ +.+-+.... +..+-.-+..|.++... +| .|||||.+| .|.
T Consensus 209 l~adivpvG~DQ~~~~~LaRdia~~~---~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~ 268 (383)
T PTZ00126 209 LKADICQLGMDQRKVNMLAREYCDKK---KIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIF 268 (383)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHh---CCCCCceeecccccccCCCCCCCCCcCCCCCeec
Confidence 4678888999996533 322232221 21111234467788777 35 799999987 464
No 190
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.37 E-value=3.4 Score=49.45 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=35.8
Q ss_pred CccceeeccceeeehhhHH-HHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCcc
Q psy17125 767 PAHVYMEGMDQINGWFMSS-LLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVI 823 (1281)
Q Consensus 767 p~dl~~~G~Dii~~wf~~~-l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv 823 (1281)
-.|+.++|.||-.+|..-. +... +.. .+ .-.+++.++.+.+|.|||||.||.+
T Consensus 180 ~~dlq~GG~DQ~~ni~~grdl~rr--~g~-~~-~~~lt~PLL~~ldG~KmgKs~~~a~ 233 (401)
T COG0162 180 NKDLQLGGSDQWGNILAGRDLIRR--LGQ-KK-VVGLTTPLLTGLDGKKMGKSEGGAV 233 (401)
T ss_pred ccchhcCChHHHHHHHHHHHHHHH--hCC-CC-eEEEEeccccCCCCCcccccCCCce
Confidence 4578899999976664322 2222 222 22 3567778888899999999999944
No 191
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=67.31 E-value=2.9 Score=49.15 Aligned_cols=58 Identities=24% Similarity=0.201 Sum_probs=34.6
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHhc----CCCCCceEEe-e-ceeeccCCC--cccccCC---CccC
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVALK----HTAPFRNVFL-H-GFVVDEKGA--KMSKSVG---NVIS 824 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l~----~~~Pf~~v~~-h-G~vld~~G~--KMSKS~G---Nvv~ 824 (1281)
+.+|+...|.||...+ +.+-+....... ...| ..++. | ..+...+|. |||||.+ |.|.
T Consensus 137 ~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P-~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~ 206 (333)
T PRK00927 137 YKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMGLDGPTKKMSKSDPNDNNTIN 206 (333)
T ss_pred cCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCC-hhhhccccccccCCCCCCCCCCCCCCCCCCeEE
Confidence 4678999999997543 333333222110 1244 34432 2 556677776 9999999 7774
No 192
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=66.06 E-value=2.6 Score=50.15 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=42.0
Q ss_pred CCCCcCcchhhhhHHHHHHHHHHHH-HCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17125 29 YANGTPHIGHAVNKILKDITLRSNL-LQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAE 107 (1281)
Q Consensus 29 ~~nG~lHiGH~~~~~~~Dv~~R~~r-~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 107 (1281)
-|||.+||||..+.+ + .|.. ..|+++.+.. .|-| |.-.. ..+++++ ++.+ ..+..+
T Consensus 10 qPSG~~HLGnylG~i-k----~wv~lq~~~~~~~~I-ADlH-------Alt~~--~~d~~~i----r~~~----~~~~a~ 66 (398)
T PRK12283 10 RPTGRLHLGHYHGVL-K----NWVKLQHEYECFFFV-ADWH-------ALTTH--YETPEVI----EKNV----WDMVID 66 (398)
T ss_pred CCCCcchHHHHHHHH-H----HHHHHhcCCcEEEEe-ecHH-------HHhCC--CCCHHHH----HHHH----HHHHHH
Confidence 378999999998844 2 3333 3477765443 3333 11111 1256555 3333 334667
Q ss_pred HHHcCceeccCCCeeecCC-HHH
Q psy17125 108 FESWGVLADWEHNCYHTFD-KEY 129 (1281)
Q Consensus 108 l~~lgi~~DW~R~~~~T~~-~~~ 129 (1281)
+.++|+..+=. ..|.-++ |+|
T Consensus 67 ~lA~GlDP~k~-~if~QS~v~eh 88 (398)
T PRK12283 67 WLAAGVDPAQA-TLFIQSKVPEH 88 (398)
T ss_pred HHHcCCCccce-EEEECCCchHH
Confidence 78999987734 2444343 444
No 193
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=64.67 E-value=15 Score=44.22 Aligned_cols=98 Identities=19% Similarity=0.244 Sum_probs=59.6
Q ss_pred CCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy17125 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEF 108 (1281)
Q Consensus 29 ~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l 108 (1281)
-|||.|||||..+.+.. ..+.+...|+++.+... |-|-+- .. .+|+++++ .+ ..+..++
T Consensus 10 qPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~IA-DlHAlT-------~~---~dp~~lr~----~~----~e~aa~~ 68 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFLA-DYHALI-------KC---DDPARIQR----ST----LEIAATW 68 (431)
T ss_pred cCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEee-chhhcc-------CC---CCHHHHHH----HH----HHHHHHH
Confidence 37999999998887653 44455556888766432 333221 11 25655522 22 2346677
Q ss_pred HHcCceeccCCCeeecCC-HHHHHHHHHHHHHHHhCCcEEee
Q psy17125 109 ESWGVLADWEHNCYHTFD-KEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 109 ~~lgi~~DW~R~~~~T~~-~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
-..|+..+=. ..|.-++ |++ ....|+|..+-..|.+-|-
T Consensus 69 LA~GlDPek~-~if~QSdvpeh-~EL~wiL~~it~~g~L~Rm 108 (431)
T PRK12284 69 LAAGLDPERV-TFYRQSDIPEI-PELTWLLTCVAGKGLLNRA 108 (431)
T ss_pred HHhCCCccce-EEEECCcchhH-HHHHHHHHhhhhHHHHHhh
Confidence 7899987744 3555555 444 4557888877777766554
No 194
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=64.41 E-value=1.1 Score=43.71 Aligned_cols=31 Identities=39% Similarity=0.648 Sum_probs=26.0
Q ss_pred cceeeeeeehhcccccCcccccchhhhhccC
Q psy17125 1057 GLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1087 (1281)
Q Consensus 1057 ~q~~l~~~~~~~~~~~~pilp~~aee~~~~~ 1087 (1281)
.+.++..++..+.++++|++||+|||+|..+
T Consensus 87 ~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 87 NKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred hHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 3456778888889999999999999999753
No 195
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=61.86 E-value=17 Score=45.00 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=36.3
Q ss_pred cceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhc
Q psy17125 769 HVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQ 830 (1281)
Q Consensus 769 dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~ 830 (1281)
+-.+-|.|++. +....+...-++....| ....+.++++.+|.||||..| .++..++.+
T Consensus 209 thvIrG~d~~~-~t~~q~~l~~alG~~~p--~~~H~pli~~~~g~klSKR~g-~~~l~~l~~ 266 (476)
T PRK01406 209 THVIRGEDHLS-NTPKQILLYEALGWEVP--VFAHLPLILGPDGKKLSKRHG-ATSVEQYRD 266 (476)
T ss_pred CEEEECchhhc-CHHHHHHHHHHhCCCCC--eEEEeeeeeCCCCCcccCcCC-ccCHHHHHH
Confidence 44456666553 23333333334443333 555557788899999999999 777888777
No 196
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=61.36 E-value=14 Score=44.77 Aligned_cols=50 Identities=26% Similarity=0.194 Sum_probs=30.6
Q ss_pred CCcEEEEcCCCCCCCc-CcchhhhhHHHHHHHHHHHHHCCCeeEEecccCC--CCchH
Q psy17125 18 KPEFILHDGPPYANGT-PHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDC--HGLPI 72 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~-lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~--~G~pi 72 (1281)
++++.+..|+ -|||+ ||+||+.. +. .+.+++ ..|+++.+..|=-+ .|.|-
T Consensus 31 ~~~~~iy~G~-dPT~~sLHlGhlv~-l~--~l~~lq-~~G~~~~~ligd~ta~igDps 83 (410)
T PRK13354 31 GKPLTLYLGF-DPTAPSLHIGHLVP-LM--KLKRFQ-DAGHRPVILIGGFTGKIGDPS 83 (410)
T ss_pred CCCcEEEEcc-cCCCCCcchhhHHH-HH--HHHHHH-HcCCeEEEEEcccccccCCCC
Confidence 3445566554 57884 99999544 22 244444 57888888776544 34454
No 197
>KOG2623|consensus
Probab=60.76 E-value=7 Score=45.51 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=41.1
Q ss_pred hhhhccCCCccceeeccceeeehhhHHH-HHHHHhcC-CCCCceEEeeceeeccCCCcccccCCCccChh
Q psy17125 759 WSHVLKDKPAHVYMEGMDQINGWFMSSL-LTSVALKH-TAPFRNVFLHGFVVDEKGAKMSKSVGNVISAH 826 (1281)
Q Consensus 759 w~~~l~~~p~dl~~~G~Dii~~wf~~~l-~~~~~l~~-~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~ 826 (1281)
|+++...+.+.+.++|.||.-+ +.... +..-.... ..+| =++-.++.+..|.|+-||-||.|+.+
T Consensus 219 fy~L~~~~g~~~QlGGsDQwGN-itaG~dlI~ki~~~~~~vf--GlT~PLlTsstG~KlGKSaGnAvWLd 285 (467)
T KOG2623|consen 219 FYHLYENYGCRFQLGGSDQWGN-ITAGTDLIRKIMPIQAFVF--GLTFPLLTSSTGAKLGKSAGNAVWLD 285 (467)
T ss_pred HHHHHHhcCeeEEecccccccc-cchHHHHHHHhccccccee--eeeeeeEecCcchhhccCCCceEEec
Confidence 5566666889999999999843 32221 00001111 1222 24556778899999999999999754
No 198
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=60.48 E-value=46 Score=32.48 Aligned_cols=79 Identities=16% Similarity=0.293 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCCh--HHHHHHHHHHHHHHHHH
Q psy17125 920 RYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSING--EARLSGLHTLHNIFHVL 997 (1281)
Q Consensus 920 ~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~--~~r~~~~~~l~~~l~~l 997 (1281)
...++.++..+..+...+..+++.++++..++.+.++. ..++.|| +.. ++..++... ..|...+.....++...
T Consensus 32 ~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La-~~f~~fy-~~~--~I~~~~~~~~~~~RL~Ll~~v~~vl~~~ 107 (119)
T PF05746_consen 32 EEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELA-QAFNSFY-DNV--RILDEDEEIRKNNRLALLKAVRQVLKNG 107 (119)
T ss_dssp SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHH-HHHHHHH-HHS---STTSTTCHH-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHH-hhc--cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788999999999999999999999999999998 7888877 322 333332221 23444455555666666
Q ss_pred HHHhc
Q psy17125 998 LRTVA 1002 (1281)
Q Consensus 998 ~~lLa 1002 (1281)
+.+|.
T Consensus 108 l~llg 112 (119)
T PF05746_consen 108 LDLLG 112 (119)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 66654
No 199
>PLN02886 aminoacyl-tRNA ligase
Probab=59.23 E-value=16 Score=43.65 Aligned_cols=89 Identities=11% Similarity=0.114 Sum_probs=49.9
Q ss_pred CCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy17125 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEF 108 (1281)
Q Consensus 29 ~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l 108 (1281)
-|+|.+||||..+.+.. +.++++ |+++.+.. .|-|-+ -.. .+++++ ++.+. .+..++
T Consensus 54 qPSG~lHLGnylGai~~--~v~lQ~--~~~~~~~I-ADlHAl-------t~~---~~~~~l----r~~~~----~~~a~~ 110 (389)
T PLN02886 54 QPTGSIHLGNYLGAIKN--WVALQE--TYDTFFCV-VDLHAI-------TLP---HDPREL----GKATR----STAAIY 110 (389)
T ss_pred CCCCccHHHHHHHHHHH--HHHHhc--cCCEEEEE-ecHHHh-------hCC---CCHHHH----HHHHH----HHHHHH
Confidence 36799999998877632 555554 77775443 333321 111 266665 33333 345677
Q ss_pred HHcCceeccCCCeeecCC-HHHHHHHHHHHHHHHh
Q psy17125 109 ESWGVLADWEHNCYHTFD-KEYVKNQLCQFYNLYK 142 (1281)
Q Consensus 109 ~~lgi~~DW~R~~~~T~~-~~~~~~v~~~f~~L~~ 142 (1281)
.++|+..+=. ..|.-++ +++. ...|++..+..
T Consensus 111 lA~GlDP~ks-~if~QS~v~e~~-eL~wil~~~t~ 143 (389)
T PLN02886 111 LACGIDPSKA-SVFVQSHVPAHA-ELMWLLSCSTP 143 (389)
T ss_pred HHcCcCccce-EEEEeCCCchhH-HHHHHHHhhCc
Confidence 8899988744 2444444 4443 33566555433
No 200
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=55.46 E-value=13 Score=38.33 Aligned_cols=31 Identities=23% Similarity=-0.005 Sum_probs=23.8
Q ss_pred HHHHHHHCCCeeEEecccCCCCchHHHHHHHhc
Q psy17125 48 TLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK 80 (1281)
Q Consensus 48 ~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~ 80 (1281)
++|++|+.||+|.+..+.++. .+...|.+++
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~--~il~~A~~e~ 42 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDD--EILELAREEG 42 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChH--HHHHHhhhCC
Confidence 799999999999999877554 4555565554
No 201
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=54.29 E-value=73 Score=40.78 Aligned_cols=146 Identities=17% Similarity=0.318 Sum_probs=118.1
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCC---------------CCceEEee-ceeeccCCCcccccCCCccChhhhh
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTA---------------PFRNVFLH-GFVVDEKGAKMSKSVGNVISAHDIT 829 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~---------------Pf~~v~~h-G~vld~~G~KMSKS~GNvv~p~dli 829 (1281)
.+.|+|.+|.|+++.|...-+..+.+..++. ||.+.++| |||+ .+|+|||||+||+++|.+++
T Consensus 445 ~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~-vdGeKMSKSLGN~it~~dlL 523 (699)
T PRK14535 445 DTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIR-VDGEKMSKSLGNFFTIREVL 523 (699)
T ss_pred CcceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEe-eCCCccCCCCCCcCCHHHHH
Confidence 4689999999999999888887777665542 57777666 7776 89999999999999999999
Q ss_pred cccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhc
Q psy17125 830 QGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLH 909 (1281)
Q Consensus 830 ~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~ 909 (1281)
+ +||+|++|||++++. ..++++|+.+.+.++.+.++++++.++.+.. .
T Consensus 524 e-----------------------------~ygpdalRl~lLssh-YRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~-~- 571 (699)
T PRK14535 524 K-----------------------------QYDPEVVRFFILRAH-YRSPLNYSDAHLDDAKGALTRLYTTLKNTPA-A- 571 (699)
T ss_pred H-----------------------------hCCHHHHHHHHHcCC-CCCCCCcCHHHHHHHHHHHHHHHHHHHhhhh-c-
Confidence 9 999999999999965 4899999999999999999999988866421 0
Q ss_pred CCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHH
Q psy17125 910 NHSESTGSISRYVDVYMLKRLCEFQNTMDTLYG-EFQYARASRVLLNFV 957 (1281)
Q Consensus 910 ~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e-~~~~~~ai~~i~~f~ 957 (1281)
. .. ....+..+.+.+.++|+ ++++..|+..+++++
T Consensus 572 ~-------~~------~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lv 607 (699)
T PRK14535 572 E-------FM------LSENVNDYTRRFYAAMNDDFGTVEAVAVLFELA 607 (699)
T ss_pred c-------ch------hhhhHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 0 00 11234455667777776 799999999999998
No 202
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=53.62 E-value=54 Score=40.58 Aligned_cols=125 Identities=22% Similarity=0.206 Sum_probs=110.1
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHH
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNF 96 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~ 96 (1281)
++.++|++. |||+|.+||||+++++..|+++||+||+||+|.+++|+|++|.+|..+|.+++ .++ +++
T Consensus 22 ~~v~~yvcg--Ptvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g---~~~-------~e~ 89 (463)
T PRK00260 22 GKVKMYVCG--PTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEG---ESI-------KEL 89 (463)
T ss_pred CcceEEEeC--CccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcC---CCH-------HHH
Confidence 455677774 45679999999999999999999999999999999999999999999998886 777 677
Q ss_pred HHHHHHHHHHHHHHcCc-eeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCC
Q psy17125 97 ALETINTQKAEFESWGV-LADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPS 158 (1281)
Q Consensus 97 ~~~~~~~~~~~l~~lgi-~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~ 158 (1281)
++++++.+++++++||| ..||. .+++ .|...+++++.+|.++|++|++.++|+||+.
T Consensus 90 ~~~~~~~f~~~~~~Lgi~~~d~~---~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~ 147 (463)
T PRK00260 90 TERYIAAFHEDMDALNVLPPDIE---PRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVR 147 (463)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcc---cccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEecc
Confidence 99999999999999999 56754 2233 5888999999999999999999999999986
No 203
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=53.26 E-value=32 Score=42.66 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=47.3
Q ss_pred ccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccc
Q psy17125 768 AHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVIS 847 (1281)
Q Consensus 768 ~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~ 847 (1281)
.+-.+-|.|++. +....+...-++.... .....+++|++.+|.||||..|.. ...++.+
T Consensus 197 ithVIRG~d~~~-~t~~q~~l~~aLG~~~--p~~~H~plv~~~~g~KLSKR~g~~-~i~~~r~----------------- 255 (513)
T PRK14895 197 ITHIIRGDDHLT-NAARQLAIYQAFGYAV--PSMTHIPLIHGADGAKLSKRHGAL-GIEAYKD----------------- 255 (513)
T ss_pred CCEEEECchHhh-hHHHHHHHHHHcCCCC--CeEEEEEeEEcCCCCccccccCch-hHHHHHH-----------------
Confidence 344456666663 2333333333444333 477777999989999999999874 3344433
Q ss_pred cccccccccCCCCCchhHHHHHHHhcCC
Q psy17125 848 AHDITQGAKKLPAYGVDVLRWWVAAHAS 875 (1281)
Q Consensus 848 ~~~~~~~~~~i~~yGaDalR~~l~~~~~ 875 (1281)
.-|-+.+++=||+..+.
T Consensus 256 -----------~G~~Peai~n~la~LG~ 272 (513)
T PRK14895 256 -----------MGYLPESLCNYLLRLGW 272 (513)
T ss_pred -----------CCCCHHHHHHHHHHhCC
Confidence 04568888888886554
No 204
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=52.71 E-value=23 Score=42.90 Aligned_cols=41 Identities=20% Similarity=0.109 Sum_probs=27.3
Q ss_pred CcEEEEcCCCCCCCc-CcchhhhhHHHHHHHHHHHHHCCCeeEEecc
Q psy17125 19 PEFILHDGPPYANGT-PHIGHAVNKILKDITLRSNLLQGKRVHYVPG 64 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~-lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G 64 (1281)
+++.+..|+ -|||+ ||+||+.. -..+.++++ .|+++.+..|
T Consensus 32 ~~~~vy~G~-dPTg~slHlGhlv~---l~~l~~lQ~-~G~~~~~lig 73 (408)
T PRK05912 32 EPLRIYLGF-DPTAPSLHLGHLVP---LLKLRRFQD-AGHKPIALIG 73 (408)
T ss_pred CCCEEEEee-cCCCCCccHHhHHH---HHHHHHHHH-CCCcEEEEEc
Confidence 445555554 57895 99999873 234555555 6888877765
No 205
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=52.55 E-value=18 Score=42.51 Aligned_cols=76 Identities=24% Similarity=0.178 Sum_probs=43.0
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHH
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFA 97 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~ 97 (1281)
++++++..|. -|||.+||||.. .+.. +.+++++ |+++.+..+=. |.+-.. ..+++++ ++.+
T Consensus 28 ~~~~~v~~G~-~PTG~lHLG~~~-~~~~--~~~lq~~-g~~~~i~IaD~-ha~~~~---------~~~~~~i----~~~~ 88 (329)
T PRK08560 28 KEEPKAYIGF-EPSGKIHLGHLL-TMNK--LADLQKA-GFKVTVLLADW-HAYLND---------KGDLEEI----RKVA 88 (329)
T ss_pred CCCCEEEEcc-CCCCcchhhhhH-HHHH--HHHHHHC-CCeEEEEEccc-hhhcCC---------CCCHHHH----HHHH
Confidence 4455555454 578999999955 3333 6777764 88776654422 221110 0245444 3333
Q ss_pred HHHHHHHHHHHHHcCceec
Q psy17125 98 LETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 98 ~~~~~~~~~~l~~lgi~~D 116 (1281)
..+..++.++|+..+
T Consensus 89 ----~~~~~~~~A~G~dp~ 103 (329)
T PRK08560 89 ----EYNKKVFEALGLDPD 103 (329)
T ss_pred ----HHHHHHHHHcCCChh
Confidence 345667788898665
No 206
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=49.69 E-value=35 Score=40.27 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=38.6
Q ss_pred CCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy17125 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEF 108 (1281)
Q Consensus 29 ~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l 108 (1281)
-|||.+||||..+.+.. +.++++. ++|.+..+ |-|-+- .. .+++++ ++.+ .....++
T Consensus 9 ~PTG~lHLG~~~g~~~~--~~~lQ~~--~~~~~~Ia-D~ha~t-------~~---~~~~~i----~~~~----~~~~~~~ 65 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKN--WVELQDE--YECFFCIA-DLHALT-------VP---QDPEEL----RENT----RELAADY 65 (333)
T ss_pred CCCccchHHhHHHHHHH--HHHHHhc--CCeEEEEe-cHHHHh-------CC---CCHHHH----HHHH----HHHHHHH
Confidence 47899999999987654 5666653 66666553 222110 01 255554 3333 3346667
Q ss_pred HHcCceec
Q psy17125 109 ESWGVLAD 116 (1281)
Q Consensus 109 ~~lgi~~D 116 (1281)
.+.|+..+
T Consensus 66 lA~GlDp~ 73 (333)
T PRK00927 66 LACGIDPE 73 (333)
T ss_pred HeEccChh
Confidence 78898876
No 207
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=48.22 E-value=36 Score=40.07 Aligned_cols=90 Identities=20% Similarity=0.240 Sum_probs=48.1
Q ss_pred CCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy17125 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEF 108 (1281)
Q Consensus 29 ~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l 108 (1281)
-|||.+||||..+.+.. ..+.+.-.|.++.+... |-|-+- .. -+++++ ++.+. ....++
T Consensus 11 qPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~IA-DlHalt-------~~---~~~~~l----~~~~~----~~~~~~ 69 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFIA-DYHALN-------AV---HDPEQF----RSYTR----EVAATW 69 (332)
T ss_pred CCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEEe-chhhcc-------CC---CCHHHH----HHHHH----HHHHHH
Confidence 36899999998876553 33444445665655543 222121 11 256555 33333 335566
Q ss_pred HHcCceeccCCCeeecCC-HHHHHHHHHHHHHHH
Q psy17125 109 ESWGVLADWEHNCYHTFD-KEYVKNQLCQFYNLY 141 (1281)
Q Consensus 109 ~~lgi~~DW~R~~~~T~~-~~~~~~v~~~f~~L~ 141 (1281)
-+.|+..+=. ..|.-++ +++.+. .|++..+-
T Consensus 70 lA~GlDP~k~-~if~qS~v~~~~eL-~~il~~~t 101 (332)
T PRK12556 70 LSLGLDPEDV-IFYRQSDVPEIFEL-AWILSCLT 101 (332)
T ss_pred hheeecccce-EEEECCCchHHHHH-HHHHHccc
Confidence 7899987733 2333344 454433 34555543
No 208
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=47.24 E-value=7.2 Score=46.64 Aligned_cols=148 Identities=18% Similarity=0.141 Sum_probs=120.0
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcc
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNV 845 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~ 845 (1281)
.+.|++.+|.|+++.|....+..+.++.++.||.++++||.+++.+|+|||||+||+|+|. +
T Consensus 213 ~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~---e--------------- 274 (384)
T PRK12418 213 SGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVS---R--------------- 274 (384)
T ss_pred CCcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHH---H---------------
Confidence 4789999999999999999999999998888999999998888999999999999999875 3
Q ss_pred cccccccccccCCCCCchh--HHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHH
Q psy17125 846 ISAHDITQGAKKLPAYGVD--VLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVD 923 (1281)
Q Consensus 846 ~~~~~~~~~~~~i~~yGaD--alR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d 923 (1281)
+-++|+| ++|||+++.. ..++++|+++.+..+.+.++++++++.... . .
T Consensus 275 ------------ll~~G~d~~~lR~~lls~~-yr~~l~fs~e~l~~a~~~l~r~~~~~~~~~----------~-~----- 325 (384)
T PRK12418 275 ------------LRAAGVDPAAIRLALLAGH-YRADREWTDAVLAEAEARLARWRAAAALPA----------G-P----- 325 (384)
T ss_pred ------------HHhccCChhheeEEEeccC-CCCCcccCHHHHHHHHHHHHHHHHHHhccc----------c-c-----
Confidence 1145555 9999998544 489999999999999999999988775420 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHhhhhHHHH
Q psy17125 924 VYMLKRLCEFQNTMDTLYG-EFQYARASRVLLNFVVNELSAFYFT 967 (1281)
Q Consensus 924 ~~il~~l~~~~~~v~~~~e-~~~~~~ai~~i~~f~~~~l~~~Yle 967 (1281)
.+.++.+.+.++|+ ++++..|+..+++++ . ..|.|..
T Consensus 326 -----~~~~~~~~f~~al~dDlnt~~a~~~l~~~~-~-~~n~~~~ 363 (384)
T PRK12418 326 -----DAADVVARVRAALADDLDTPGALAAVDGWA-T-DALEGGG 363 (384)
T ss_pred -----hHHHHHHHHHHHHHhcCChHHHHHHHHHHH-H-HHHhccC
Confidence 12334566777776 699999999999999 3 3566654
No 209
>PLN02486 aminoacyl-tRNA ligase
Probab=45.10 E-value=15 Score=44.05 Aligned_cols=52 Identities=23% Similarity=0.202 Sum_probs=27.6
Q ss_pred ceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeeccCC--CcccccCCC-ccCh
Q psy17125 770 VYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDEKG--AKMSKSVGN-VISA 825 (1281)
Q Consensus 770 l~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G--~KMSKS~GN-vv~p 825 (1281)
+.-.|.||-..+ +.+-+... +....| .++.|.++....| .|||||.+| .|..
T Consensus 222 lVPvG~DQd~~~~ltRdia~r--~~~~kp--~~~~~~~lp~L~g~~~KMSkS~~nsaI~L 277 (383)
T PLN02486 222 LIPCAIDQDPYFRMTRDVAPR--LGYYKP--ALIESRFFPALQGESGKMSASDPNSAIYV 277 (383)
T ss_pred eeecccchHHHHHHHHHHHHH--hCCCCc--ceeccccccCCCCCCCcCcCcCCCCeeec
Confidence 344577775422 22222222 222344 3334556666666 699999988 5643
No 210
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=42.92 E-value=9.2 Score=46.05 Aligned_cols=141 Identities=15% Similarity=0.132 Sum_probs=114.3
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcc
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNV 845 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~ 845 (1281)
.+.|++.+|.|+++.|....+..+.++.++.||.++++|+..++.+|+|||||+||++++. + +
T Consensus 240 ~~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~---d--------------l 302 (411)
T TIGR03447 240 AGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVS---K--------------L 302 (411)
T ss_pred CceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHH---H--------------H
Confidence 3679999999999999999999999998888999999998888899999999999999874 2 0
Q ss_pred cccccccccccCCC-CCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHH
Q psy17125 846 ISAHDITQGAKKLP-AYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDV 924 (1281)
Q Consensus 846 ~~~~~~~~~~~~i~-~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~ 924 (1281)
+. .|++|++|||++++.+ .++++|+++.++++++.++++++++.... . .
T Consensus 303 ------------~~~g~dp~~lRl~lls~~Y-r~pl~fs~e~l~~a~~~l~rl~~~~~~~~----------~-~------ 352 (411)
T TIGR03447 303 ------------RAAGVDPAAIRLGLLAGHY-RQDRDWTDAVLAEAEARLARWRAALAATD----------A-P------ 352 (411)
T ss_pred ------------HhcCCCcccEEEEEecCCC-CCCCccCHHHHHHHHHHHHHHHHHHhhcc----------c-c------
Confidence 01 2678899999996555 89999999999999999999888875321 0 0
Q ss_pred HHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHH
Q psy17125 925 YMLKRLCEFQNTMDTLYG-EFQYARASRVLLNFV 957 (1281)
Q Consensus 925 ~il~~l~~~~~~v~~~~e-~~~~~~ai~~i~~f~ 957 (1281)
.+..+...+.++|+ ++++..|+..+++++
T Consensus 353 ----~~~~~~~~~~~al~dDln~p~a~~~l~~~~ 382 (411)
T TIGR03447 353 ----DATDLIARLRQHLANDLDTPAALAAVDNWA 382 (411)
T ss_pred ----hHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 11233345556665 789999999999988
No 211
>KOG2007|consensus
Probab=42.35 E-value=80 Score=38.48 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=105.0
Q ss_pred cEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHH-HCCCeeEEecccCCCCchHHHHHHHh-cccCCCHHHHHHHHHHHH
Q psy17125 20 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNL-LQGKRVHYVPGWDCHGLPIELKAITS-KDKLLSPLDIRKKAKNFA 97 (1281)
Q Consensus 20 ~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r-~~G~~V~~~~G~D~~G~pie~~a~~~-~~~~~~~~e~~~~~~~~~ 97 (1281)
.+|++ =|+++..-||||||+|+.-||+.|+++ .-||+|.|++++.+....|..+|.++ .+ ..|..+.+. |+
T Consensus 57 ~wY~C--GpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~--e~~~~l~~~---F~ 129 (586)
T KOG2007|consen 57 TWYIC--GPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMG--EKPLSLSER---FC 129 (586)
T ss_pred EEEEe--cCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhc--cchhhHHHH---HH
Confidence 46666 378999999999999999999999999 99999999999999999999988633 21 234333222 33
Q ss_pred HHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCC
Q psy17125 98 LETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPS 158 (1281)
Q Consensus 98 ~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~ 158 (1281)
.+-+.+.++|.+|++... .+.|.=.+|...+..+++++.++|+.|..++.||||..
T Consensus 130 -~~e~eF~~DM~~LnvLpP----tv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~ 185 (586)
T KOG2007|consen 130 -YYEEEFLQDMAALNVLPP----TVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVD 185 (586)
T ss_pred -HHHHHHHHHHHHhCCCCC----cccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEecc
Confidence 445677899999999984 77787789999999999999999999999999999864
No 212
>KOG1195|consensus
Probab=42.06 E-value=2.7e+02 Score=34.19 Aligned_cols=173 Identities=14% Similarity=0.156 Sum_probs=91.8
Q ss_pred CcccccCCCccChhhhhcccc--cCcccccccCccc---ccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchh
Q psy17125 813 AKMSKSVGNVISAHDITQGAK--KLPAYEKSVGNVI---SAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNIL 887 (1281)
Q Consensus 813 ~KMSKS~GNvv~p~dli~g~~--~~~~msks~gn~~---~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l 887 (1281)
.=||.-+|+++-..|+++-+. -.+.|.++...-. .+.+.. ...|+-|+..-.+-..- .++..|+.+..
T Consensus 366 ~GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~va------d~lg~sAviv~d~k~rr-~s~yeF~w~~~ 438 (567)
T KOG1195|consen 366 QGMSTRKGKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVA------DRLGLSAVIVQDFKGRR-ISNYEFSWNRV 438 (567)
T ss_pred ccccccCCceeeHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHH------HHHhhHHHHHHHHHHHh-cccceEEhhhh
Confidence 369999999999999987321 1134544322111 111111 04566666654443221 35667776655
Q ss_pred ccchH----HH----HHHHHHHHHHHHhhcCCCCCC------CCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy17125 888 NSSQD----DV----QKIRSSLRYLLGVLHNHSEST------GSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVL 953 (1281)
Q Consensus 888 ~~~~~----~~----~kl~n~~r~~~~~l~~~~~~~------~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i 953 (1281)
-...- .+ .||..+.+ +..+..... .....+.-..++..|..+.+-+..+++.++.+..+..+
T Consensus 439 ~~~~gdtg~yLQY~HsRL~Sler----k~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL 514 (567)
T KOG1195|consen 439 LSFEGDTGPYLQYTHSRLRSLER----KFSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYL 514 (567)
T ss_pred heecCCchHHHHHHHHHHHHHHH----hccccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHH
Confidence 33211 11 23332222 212111110 00011112346778888999999999999999999999
Q ss_pred HHHHHHhhhhHHHHhhcccccccCCChH---HHHHHHHHHHHHHHHHHHHhc
Q psy17125 954 LNFVVNELSAFYFTLVKDRLYCDSINGE---ARLSGLHTLHNIFHVLLRTVA 1002 (1281)
Q Consensus 954 ~~f~~~~l~~~Yle~~k~~~~~~~~~~~---~r~~~~~~l~~~l~~l~~lLa 1002 (1281)
+.+. +.++..|-. -|+. +...+ .|.........+|...+++|.
T Consensus 515 ~~La-~a~s~~yk~---l~V~--d~~~eia~aRL~Lf~AvRqVL~ngm~lLG 560 (567)
T KOG1195|consen 515 FKLA-HAVSSAYKI---LWVK--DSPMEIALARLLLFSAVRQVLNNGMRLLG 560 (567)
T ss_pred HHHH-HHHHhHHhh---eeec--CCcHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 9888 677777622 1222 22222 233334455566777777664
No 213
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=41.62 E-value=14 Score=46.06 Aligned_cols=71 Identities=17% Similarity=0.090 Sum_probs=52.6
Q ss_pred hHHHHhhccCCceeeeeeeeccCccccCCCcEEEcccceecccccccHHHHHHhh--cCceeeccccHH----HHHHHHc
Q psy17125 1133 KDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACL--EGVNFVPESAKK----SLRDQIA 1206 (1281)
Q Consensus 1133 ~~~v~~l~~~~~l~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~--~~~~~~P~~~~~----~~~~~~~ 1206 (1281)
.++|+.|.+.|+- ..--+..|||||=. |.....-.|||-+++.+-+.+.+.- ++|-++..++-. .+.+|++
T Consensus 159 ~kLIe~L~~iGY~--~~nL~gAPYDWRls-~~~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~wv~ 235 (642)
T PLN02517 159 AVLIANLARIGYE--EKNMYMAAYDWRLS-FQNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMKWVE 235 (642)
T ss_pred HHHHHHHHHcCCC--CCceeecccccccC-ccchhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHHhcc
Confidence 5688888888886 46678899999933 3334455999999888888776544 478899888765 5566765
No 214
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=40.44 E-value=4.7 Score=39.08 Aligned_cols=30 Identities=33% Similarity=0.623 Sum_probs=24.7
Q ss_pred ceeeeeeehhcccccCcccccchhhhhccC
Q psy17125 1058 LHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1087 (1281)
Q Consensus 1058 q~~l~~~~~~~~~~~~pilp~~aee~~~~~ 1087 (1281)
+.++..++..+..+++|++|++++++|..+
T Consensus 88 ~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 88 AAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred HHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 455667777888999999999999999753
No 215
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=38.08 E-value=66 Score=39.22 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=34.7
Q ss_pred eEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCC
Q psy17125 800 NVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHAS 875 (1281)
Q Consensus 800 ~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~ 875 (1281)
....++++++.+|+||||..|.. +..++.+ ..|-+++++=|++..+.
T Consensus 221 ~f~Hlpli~~~~g~KLSKR~~~~-~v~~~r~----------------------------~G~~PeAi~n~l~~lG~ 267 (433)
T PRK12410 221 TYAHLPIILNEEGKKMSKRDNAS-SVKWLLE----------------------------QGFLPSAIANYLILLGN 267 (433)
T ss_pred eEEEeeeeeCCCCCeeecccChh-hHHHHHH----------------------------CCCCHHHHHHHHHHhCC
Confidence 55566889999999999998853 3444444 05668899999888774
No 216
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=37.85 E-value=77 Score=38.07 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=27.0
Q ss_pred cEEEEcCCCCCCC-cCcchhhhhHHHHHHHHHHHHHCCCeeEEecc
Q psy17125 20 EFILHDGPPYANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 64 (1281)
Q Consensus 20 ~f~i~~~pP~~nG-~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G 64 (1281)
++.+..|+ -||| .||+||+.. --.+.++++ .|++|.+..|
T Consensus 30 ~~~vy~G~-dPTg~~lHlGh~v~---l~~l~~lq~-~G~~~~ilig 70 (377)
T TIGR00234 30 KIKLYVGF-DPTAPSLHLGHLVP---LLKLRDFQQ-AGHEVIVLLG 70 (377)
T ss_pred CCEEEEee-CCCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEe
Confidence 45555554 4799 899999775 223556665 6888888764
No 217
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=37.64 E-value=21 Score=45.82 Aligned_cols=57 Identities=25% Similarity=0.157 Sum_probs=32.5
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeeccC-C-CcccccC-CCccCh
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDEK-G-AKMSKSV-GNVISA 825 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~-G-~KMSKS~-GNvv~p 825 (1281)
+.+|+...|.||...+ +.+-+... .+..|-..+..|.++...+ | .|||||. +|.|..
T Consensus 174 l~adivpvG~DQ~qh~eLaRdia~~---~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L 234 (682)
T PTZ00348 174 LKADICQLGLDQRKVNMLAREYCDL---IGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFM 234 (682)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHH---hCCCCCceecccccCcCCCCCCCcCCCCCCCCeecc
Confidence 4578888999997543 22222221 1222211233456665554 3 6999999 688753
No 218
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.35 E-value=60 Score=39.09 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=50.7
Q ss_pred CCC-cCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCC--CchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Q psy17125 30 ANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCH--GLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKA 106 (1281)
Q Consensus 30 ~nG-~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~--G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 106 (1281)
||| .||+||...... + |-.+..|++|....|==+. |.|.-. .++....+++.+.++.+.+++
T Consensus 41 PTa~slHlGhlv~l~k---L-~~fQ~aGh~~ivLigd~ta~IgDpsGk-----------~e~r~~l~~e~v~~n~~~i~~ 105 (401)
T COG0162 41 PTAPSLHLGHLVPLMK---L-RRFQDAGHKPIVLIGDATAMIGDPSGK-----------SEERKLLTRETVLENAETIKK 105 (401)
T ss_pred CCCCccchhhHHHHHH---H-HHHHHCCCeEEEEecccceecCCCCCC-----------HHHHhhccHHHHHHHHHHHHH
Confidence 589 799999866332 3 3345679999988763222 444211 111112224445566666666
Q ss_pred HHHHc-C---ceeccCCCeeecCCHHHHHHHHHH-----HHHHHhCC
Q psy17125 107 EFESW-G---VLADWEHNCYHTFDKEYVKNQLCQ-----FYNLYKQD 144 (1281)
Q Consensus 107 ~l~~l-g---i~~DW~R~~~~T~~~~~~~~v~~~-----f~~L~~~G 144 (1281)
++.++ . ...+ +.-+..+..|..++..+ ..+|.++.
T Consensus 106 ql~~~ld~k~~~v~---ns~w~~~~~y~~~l~~~g~~~sv~rml~~d 149 (401)
T COG0162 106 QLGKFLDNKAEFVN---NSDWLKKLNYLDFLRDVGKHFSVNRMLRRD 149 (401)
T ss_pred HhcccCCcceEEEe---chHHhCcCCHHHHHHHHHhHccHHHHHHhh
Confidence 55532 1 1111 22334556677776666 44555543
No 219
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.12 E-value=61 Score=37.63 Aligned_cols=77 Identities=17% Similarity=0.225 Sum_probs=43.6
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCC-eeEEecccCCCCchHHHHHHHhcccCCCH-HHHHHHHHHH
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGK-RVHYVPGWDCHGLPIELKAITSKDKLLSP-LDIRKKAKNF 96 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~-~V~~~~G~D~~G~pie~~a~~~~~~~~~~-~e~~~~~~~~ 96 (1281)
.++.|+.|. -|||.|||||..+.+. .+++...++ ++.+. =.|.|.+-+. . ..+ +++ +.+
T Consensus 4 ~~~~vlSG~-~PSG~lHLGny~ga~~----~~v~~q~~~~~~f~~-IaDlha~t~~------~---~~~~~~l----~~~ 64 (314)
T COG0180 4 KKFRVLSGI-QPSGKLHLGNYLGAIR----NWVLLQEEYYECFFF-IADLHAITVR------Q---DPTEEDL----RQA 64 (314)
T ss_pred CCceEEecC-CCCCCcchhHhHHHHH----HHHHHhcccCceEEE-EecHHHhhcC------C---CChHHHH----HHH
Confidence 345555554 5799999999988764 456666664 66554 3344422211 0 122 222 333
Q ss_pred HHHHHHHHHHHHHHcCceeccC
Q psy17125 97 ALETINTQKAEFESWGVLADWE 118 (1281)
Q Consensus 97 ~~~~~~~~~~~l~~lgi~~DW~ 118 (1281)
+.+ .-.++-++|+..+=.
T Consensus 65 ~~e----~~a~~LA~GiDP~k~ 82 (314)
T COG0180 65 TRE----VAADYLAVGLDPEKS 82 (314)
T ss_pred HHH----HHHHHHHhccCcccc
Confidence 443 355667899998843
No 220
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=34.89 E-value=95 Score=34.69 Aligned_cols=28 Identities=11% Similarity=0.174 Sum_probs=23.3
Q ss_pred CCchhHHHHHHHhcCCCCCccccCcchh
Q psy17125 860 AYGVDVLRWWVAAHASKDPTVPIGKNIL 887 (1281)
Q Consensus 860 ~yGaDalR~~l~~~~~~~~d~~f~~~~l 887 (1281)
.|-+++++-|++..+....+..|+.+.|
T Consensus 197 G~~peal~~~l~~lG~s~~~~~~~~~~l 224 (238)
T cd00807 197 GVTPEAIRQFILRQGVSKADSTIDWDKL 224 (238)
T ss_pred CCCHHHHHHHHHHhCCCCCCcccCHHHH
Confidence 4558999999999998888888887765
No 221
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=33.94 E-value=37 Score=39.15 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEeccc
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGW 65 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~ 65 (1281)
+++.+..|. -|||.||+||..... .+.++++ .|++|.+..|=
T Consensus 4 ~~~~~y~G~-~PTg~lHlG~l~~~~---~~~~lq~-~g~~~~i~iaD 45 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGDLHLGHLVPIM---KLIWLQK-AGFKVIILIAD 45 (292)
T ss_dssp SSEEEEEEE-ESSSS-BHHHHHHHH---HHHHHHH-TTSEEEEEEEH
T ss_pred CCcEEEEeE-CCCCcccchHHHHHH---HHHHHHh-cCCccceEecc
Confidence 445555554 478999999776642 3455555 89998887653
No 222
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=33.66 E-value=15 Score=42.28 Aligned_cols=94 Identities=28% Similarity=0.427 Sum_probs=69.2
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEee-ceeeccCCCcccccCCCccChhhhhcccccCcccccccCc
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLH-GFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGN 844 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~h-G~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn 844 (1281)
.+.|++.+|.|+++.|...-+..+.+..+ .||.+.++| |++. .+|+|||||+||+++..+
T Consensus 205 ~~~DIH~GG~DL~FPHHENEiAqs~a~~g-~~~a~~W~H~g~l~-~~g~KMSKSlgN~~~i~d----------------- 265 (300)
T PF01406_consen 205 DTFDIHGGGIDLIFPHHENEIAQSEAATG-KPFANYWMHNGHLN-VDGEKMSKSLGNFITIRD----------------- 265 (300)
T ss_dssp TSEEEEEEEGGGTTTHHHHHHHHHHHHHS-S-SEEEEEEE--EE-ETTCE--TTTT---BHHH-----------------
T ss_pred CCceEEccccccCCCCccchHHHHHHhhC-chHHHHHHHHHHHh-hcCccccccCCCEEEHHH-----------------
Confidence 47899999999999999999988888888 678999888 6665 899999999999997432
Q ss_pred ccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccch
Q psy17125 845 VISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQ 891 (1281)
Q Consensus 845 ~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~ 891 (1281)
+ +.+|+++++||+|++... ...++|+++.|++++
T Consensus 266 ------l------l~~~~~~~lR~~~l~~hY-r~~l~~s~~~l~~A~ 299 (300)
T PF01406_consen 266 ------L------LKKYSPDALRLFLLSTHY-RKPLNFSEENLEEAK 299 (300)
T ss_dssp ------H------HTTS-HHHHHHHHHTS-T-TS-EEE-HHHHHHHH
T ss_pred ------H------hhcCCHHHHHHHHhcCCC-CCccccCHHHHHHhc
Confidence 1 117999999999999888 789999999887664
No 223
>PLN02627 glutamyl-tRNA synthetase
Probab=33.57 E-value=2.7e+02 Score=34.97 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=35.6
Q ss_pred eEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCC
Q psy17125 800 NVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHAS 875 (1281)
Q Consensus 800 ~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~ 875 (1281)
....++++++.+|+||||..|. +...++.+ .-|-+++++=|++..+.
T Consensus 279 ~f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~----------------------------~G~~PeAi~nyla~LGw 325 (535)
T PLN02627 279 RFAHVSLILAPDRSKLSKRHGA-TSVGQFRE----------------------------MGYLPDAMVNYLALLGW 325 (535)
T ss_pred eEEEccceeCCCCCccccccCC-ccHHHHHH----------------------------CCCCHHHHHHHHHHhCC
Confidence 5666799999999999999765 34555544 05668999999988764
No 224
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=33.28 E-value=16 Score=40.20 Aligned_cols=87 Identities=28% Similarity=0.348 Sum_probs=75.3
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcc
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNV 845 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~ 845 (1281)
.|.|++.+|.|+++.|....+..+.++.++ ||.+.+.|+.+++.+|+|||||+||+|+|.+
T Consensus 127 ~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~d------------------ 187 (213)
T cd00672 127 ETFDIHGGGVDLIFPHHENEIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRD------------------ 187 (213)
T ss_pred CCccEEeecCCCCcChHHHHHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHH------------------
Confidence 588999999999999999999999998888 8899999987778999999999999998663
Q ss_pred cccccccccccCCCCCchhHHHHHHHhcCCCCCccccC
Q psy17125 846 ISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIG 883 (1281)
Q Consensus 846 ~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~ 883 (1281)
-+.+||+|++|||+++..+ .++++|+
T Consensus 188 -----------ll~~~~~da~R~~~l~~~~-~~~l~f~ 213 (213)
T cd00672 188 -----------ALKKYDPEVLRLALLSSHY-RSPLDFS 213 (213)
T ss_pred -----------HHHHcCHHHHHHHHHhCCc-CCCCCCC
Confidence 1227999999999998875 6666664
No 225
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=33.02 E-value=1.3e+02 Score=36.28 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=18.0
Q ss_pred eceeeccCCCcccccCCCccCh
Q psy17125 804 HGFVVDEKGAKMSKSVGNVISA 825 (1281)
Q Consensus 804 hG~vld~~G~KMSKS~GNvv~p 825 (1281)
|..+.+.+|+|||||.+|.|..
T Consensus 254 ~~~I~gLdg~KMSKS~~n~I~L 275 (398)
T PRK12283 254 ASKMPGLDGQKMSKSYGNTIGL 275 (398)
T ss_pred CCcccCCCCCcCCCCCCCeeeC
Confidence 5667778889999999998753
No 226
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=29.18 E-value=16 Score=35.91 Aligned_cols=27 Identities=30% Similarity=0.607 Sum_probs=21.4
Q ss_pred eeeeehhcccccCcccccchhhhhccC
Q psy17125 1061 LHNIFHVLLRTVAPIMPHLAEEVYSHL 1087 (1281)
Q Consensus 1061 l~~~~~~~~~~~~pilp~~aee~~~~~ 1087 (1281)
....+..+..+++|++|++++|+|..+
T Consensus 103 ~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 103 LLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 334456678999999999999999753
No 227
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=28.59 E-value=1.2e+02 Score=31.67 Aligned_cols=90 Identities=18% Similarity=0.074 Sum_probs=49.0
Q ss_pred HHHHHHHCCCeeEEec-ccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCC
Q psy17125 48 TLRSNLLQGKRVHYVP-GWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFD 126 (1281)
Q Consensus 48 ~~R~~r~~G~~V~~~~-G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~ 126 (1281)
+||++|+.||++.+.. +-|. .+..-+.+++.--++.+ +.+ +++ . ++|+.. .+ -.+
T Consensus 18 LARwLRllGydt~~~~~~~d~---~i~~i~~~e~rIllTRD------r~L-------~~r-~-k~g~~~-----i~-i~~ 73 (165)
T COG1656 18 LARWLRLLGYDTVYSSNESDD---EIILIAKKEGRILLTRD------REL-------YKR-A-KLGIKA-----IL-IRS 73 (165)
T ss_pred HHHHHHHcCCceeeeccCCcH---HHHHHHhcCCeEEEecc------HHH-------HHH-h-hccCce-----EE-EeC
Confidence 7999999999999986 3332 34444555432112321 111 111 1 455442 22 223
Q ss_pred HHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcccccc
Q psy17125 127 KEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALA 164 (1281)
Q Consensus 127 ~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~la 164 (1281)
....+.+.+++.+|-.++-+.. .-.=||.|++.|.
T Consensus 74 ~s~~~Ql~e~~~~~~l~~~~~~---e~~RCp~CN~~L~ 108 (165)
T COG1656 74 DSIEEQLAEFLARLGLKPRLFP---EFSRCPECNGELE 108 (165)
T ss_pred CCHHHHHHHHHHHhccchhccc---ccccCcccCCEec
Confidence 3455666666666655552221 1335999999884
No 228
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=26.26 E-value=8.7 Score=38.70 Aligned_cols=32 Identities=31% Similarity=0.624 Sum_probs=25.4
Q ss_pred ccceeeeeeehhcccccCcccccchhhhhccC
Q psy17125 1056 SGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1087 (1281)
Q Consensus 1056 s~q~~l~~~~~~~~~~~~pilp~~aee~~~~~ 1087 (1281)
+...++...+..+..+++|++|++|+++|+.+
T Consensus 104 ~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 104 AARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 34445666777888999999999999999753
No 229
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=26.16 E-value=24 Score=45.43 Aligned_cols=124 Identities=20% Similarity=0.195 Sum_probs=109.9
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHH-HCCCeeEEecccCCCCchHHHHHHHhcccCCC-HHHHHHHHHHH
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNL-LQGKRVHYVPGWDCHGLPIELKAITSKDKLLS-PLDIRKKAKNF 96 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r-~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~-~~e~~~~~~~~ 96 (1281)
=++|++.|-+| +.+||||||+++..|++.||+| +.||+|.|++|+|++|.+|..+|.+++ ++ + .++
T Consensus 61 v~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g---~~~~-------~el 128 (651)
T PTZ00399 61 VRWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEK---LSIF-------LEL 128 (651)
T ss_pred eEEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhC---CCcH-------HHH
Confidence 35788876666 9999999999999999999999 999999999999999999999999987 77 7 566
Q ss_pred HHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCC
Q psy17125 97 ALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPS 158 (1281)
Q Consensus 97 ~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~ 158 (1281)
|+++.+.+.+++.+|||..+ ..+.|. .+|...+..++.+|.++|++|.+.+.|||+.+
T Consensus 129 ~~~~~~~f~~d~~~Lni~~p---~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~ 186 (651)
T PTZ00399 129 ARKWEKEFFEDMKALNVRPP---DVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVE 186 (651)
T ss_pred HHHHHHHHHHHHHHcCCCCC---ccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEch
Confidence 99999999999999999987 454444 79999999999999999999998777766653
No 230
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=25.93 E-value=46 Score=39.15 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=23.6
Q ss_pred CCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccC
Q psy17125 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 66 (1281)
Q Consensus 29 ~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D 66 (1281)
-|||.+||||..+.+.. ++....|++|.+..+=.
T Consensus 10 ~PTG~~HlG~~l~~~~~----~~~~q~~~~~~i~IaD~ 43 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQT----KWLQQFGVELFICIADL 43 (328)
T ss_pred CCCcHhHHHHHHHHHHH----HHHHhCCCCEEEEeecc
Confidence 57899999998876653 33335788887765433
No 231
>PLN02886 aminoacyl-tRNA ligase
Probab=25.17 E-value=50 Score=39.56 Aligned_cols=16 Identities=25% Similarity=0.115 Sum_probs=12.2
Q ss_pred CCccceeeccceeeeh
Q psy17125 766 KPAHVYMEGMDQINGW 781 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w 781 (1281)
|-+|+...|.||...+
T Consensus 183 ~~a~~VPVG~DQ~qH~ 198 (389)
T PLN02886 183 YQADLVPVGEDQKQHL 198 (389)
T ss_pred cCCCeEEEccchHHHH
Confidence 5678888999998643
No 232
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=25.02 E-value=1.3e+02 Score=36.86 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=36.2
Q ss_pred eEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCC
Q psy17125 800 NVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHAS 875 (1281)
Q Consensus 800 ~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~ 875 (1281)
....++++++.+|+|+||..|. ++...+.+ .-|-+++++=|++..+.
T Consensus 226 ~f~H~pli~~~~g~KLSKR~g~-~sv~~~r~----------------------------~G~~Peai~n~la~lG~ 272 (445)
T PRK12558 226 VFAHLSLLTGADGKGLSKRLGG-LSIRSLRE----------------------------DGIEPMAIASLLARLGT 272 (445)
T ss_pred eEEEcccccCCCcccccccCCC-cCHHHHHH----------------------------CCCCHHHHHHHHHHHcC
Confidence 6666799999999999999875 44555544 05778999999998775
No 233
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=24.69 E-value=66 Score=38.64 Aligned_cols=43 Identities=19% Similarity=0.082 Sum_probs=24.2
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecc
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 64 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G 64 (1281)
++++.+..|. =|||.+||||. .+..--+..++ -.|++|.+..+
T Consensus 64 ~~~~~v~~G~-~PTG~lHLG~g--~i~~~~~~~lq-~~G~~v~~~Ia 106 (383)
T PTZ00126 64 KERPICYDGF-EPSGRMHIAQG--ILKAINVNKLT-KAGCVFVFWVA 106 (383)
T ss_pred CCCCEEEEEE-CCCCcccccch--HhHhHHHHHHH-hCCCeEEEEEc
Confidence 3444455444 46899999992 21112233343 34888777654
No 234
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=24.44 E-value=28 Score=43.02 Aligned_cols=153 Identities=19% Similarity=0.272 Sum_probs=117.5
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcc
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNV 845 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~ 845 (1281)
.|.|++.+|.|+++.|....+..+.++.++ ||.+.++|+.+++.+|+|||||+||+|+|.+
T Consensus 218 ~~~Dih~gG~Dl~fpHhene~aqs~a~~g~-~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~d------------------ 278 (465)
T TIGR00435 218 DQIDIHGGGVDLIFPHHENEIAQSEAAFGK-QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRD------------------ 278 (465)
T ss_pred CCceeeccccccccchHHHHHHHHHHhcCC-CCCcEEEEeeEEEecCccccccCCCcCCHHH------------------
Confidence 478999999999999999999999988885 5677766655556999999999999998653
Q ss_pred cccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHH
Q psy17125 846 ISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVY 925 (1281)
Q Consensus 846 ~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~ 925 (1281)
-+.+||+|++|||+++..+ .++++|+.+.+..+.+.+++++|+++++......... . ...
T Consensus 279 -----------ll~~~~~dalR~~ll~~~~-~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~~~~~~~--~-~~~----- 338 (465)
T TIGR00435 279 -----------VLKNYDPEILRYFLLSVHY-RSPLDFSEELLEAAKNALERLYKALRVLDTTLAYSGN--Q-SLN----- 338 (465)
T ss_pred -----------HHHHCCHHHHHHHHHhCCC-CCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhccccc--c-ccc-----
Confidence 1227999999999998754 8999999999999999999999999988543221000 0 000
Q ss_pred HHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHH
Q psy17125 926 MLKRLCEFQNTMDTLYG-EFQYARASRVLLNFV 957 (1281)
Q Consensus 926 il~~l~~~~~~v~~~~e-~~~~~~ai~~i~~f~ 957 (1281)
.......+...+.++|+ ++++..|+..+++++
T Consensus 339 ~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~ 371 (465)
T TIGR00435 339 KFPDEKEFEARFVEAMDDDLNTANALAVLFELA 371 (465)
T ss_pred cchhHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Confidence 00112334456666775 799999999999998
No 235
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=22.91 E-value=83 Score=36.46 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.2
Q ss_pred eEEeeceeeccCCCcccccCCCc
Q psy17125 800 NVFLHGFVVDEKGAKMSKSVGNV 822 (1281)
Q Consensus 800 ~v~~hG~vld~~G~KMSKS~GNv 822 (1281)
....++++++.+|+||||+.+..
T Consensus 222 ~y~H~pll~~~~g~kLSKr~~~~ 244 (299)
T PRK05710 222 RYLHLPLVLNADGQKLSKQNGAP 244 (299)
T ss_pred eEEEeecccCCCCCcccccCCcc
Confidence 66666899999999999998764
No 236
>PLN02946 cysteine-tRNA ligase
Probab=21.30 E-value=36 Score=42.77 Aligned_cols=166 Identities=18% Similarity=0.170 Sum_probs=121.4
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceE-EeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCc
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNV-FLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGN 844 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v-~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn 844 (1281)
.+.|+|.+|.|+++.|...-+..+.+..+. ||-+. +.||||+ .+|+|||||+||++++.+
T Consensus 276 ~~~DIH~GG~DL~FPHHENEiAQsea~~g~-~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~d----------------- 336 (557)
T PLN02946 276 HSFDIHGGGMDLVFPHHENEIAQSCAACCD-SNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQ----------------- 336 (557)
T ss_pred CCeeEeccccccCCCcccchHHHHHHHhCC-CCCceeeEeeEEE-eCCCCcCCcCCCcCCHHH-----------------
Confidence 478999999999999988888887777665 45544 4458887 899999999999998642
Q ss_pred ccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHH
Q psy17125 845 VISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDV 924 (1281)
Q Consensus 845 ~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~ 924 (1281)
-+.+||+|++|||+++..+ .++++|+.+.+..+.+-+.++.++++++...+...... ..... .+.
T Consensus 337 ------------ll~~y~~dalR~~lLs~hy-r~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~~~-~~~~~-~~~ 401 (557)
T PLN02946 337 ------------VIDLYHPLALRLFLLGTHY-RSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDST-FEKDS-VPP 401 (557)
T ss_pred ------------HHHhcCccceeeeeeccCC-CCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-ccccc-cch
Confidence 1227999999999998765 79999999999999888888988888875443211000 00000 111
Q ss_pred HHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHhhhhHHHH
Q psy17125 925 YMLKRLCEFQNTMDTLYG-EFQYARASRVLLNFVVNELSAFYFT 967 (1281)
Q Consensus 925 ~il~~l~~~~~~v~~~~e-~~~~~~ai~~i~~f~~~~l~~~Yle 967 (1281)
.+...+..+...+.++|+ ++++..|+..+++++ .. .|.+++
T Consensus 402 ~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~v-k~-~N~~~~ 443 (557)
T PLN02946 402 DTLNCINKFHDEFVTSMSDDLHTPVALAALSEPL-KT-INDLLH 443 (557)
T ss_pred hhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH-HH-HHHHhh
Confidence 123345566677888886 799999999999999 44 455553
No 237
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=20.78 E-value=1.3e+03 Score=29.26 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=22.5
Q ss_pred CCchhHHHHHHHhcCCCCCccccCcchh
Q psy17125 860 AYGVDVLRWWVAAHASKDPTVPIGKNIL 887 (1281)
Q Consensus 860 ~yGaDalR~~l~~~~~~~~d~~f~~~~l 887 (1281)
-|-++|+|=|++..+....|..++.+.|
T Consensus 319 G~~peAi~~f~~~~G~sk~~~~i~~~~L 346 (574)
T PTZ00437 319 GYTPAAINRFCELVGITRSMNVIQISML 346 (574)
T ss_pred CCCHHHHHHHHHHhCCCccceEeeHHHH
Confidence 5669999999999998777777776654
No 238
>KOG2145|consensus
Probab=20.78 E-value=94 Score=35.11 Aligned_cols=90 Identities=21% Similarity=0.177 Sum_probs=50.3
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEec-ccCCCCchHHHHHHHhcccCCCHHHHHHHHH
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVP-GWDCHGLPIELKAITSKDKLLSPLDIRKKAK 94 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~-G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~ 94 (1281)
..+++||+..|-=--++.+|+||+.-++. ..|++-. ++|..+. =+|+ | +..-. +++. +.|.
T Consensus 81 eq~kpFyLYTGRGpSS~smHlGHliPFif----tKwlQe~-F~vpLVIqlTDD-----E-KflwK---~l~~----eda~ 142 (397)
T KOG2145|consen 81 EQGKPFYLYTGRGPSSESMHLGHLIPFIF----TKWLQDV-FDVPLVIQLTDD-----E-KFLWK---DLTL----EDAK 142 (397)
T ss_pred HcCCceEEEeCCCCCccccccccchhHHH----HHHHHHH-hCCceEEEeccc-----H-HHHHh---hCcH----HHHH
Confidence 45677999988877789999999876553 2333211 2333322 1222 1 11111 1343 3457
Q ss_pred HHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHH
Q psy17125 95 NFALETINTQKAEFESWGVLADWEHNCYHTFDKEYV 130 (1281)
Q Consensus 95 ~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~ 130 (1281)
.+++++.+ +.-+.|.... ..|.-++-.|.
T Consensus 143 ~~arENaK----DIia~GFDp~---kTfIFsn~~y~ 171 (397)
T KOG2145|consen 143 KYARENAK----DIIAVGFDPK---KTFIFSNLDYM 171 (397)
T ss_pred HHHHhccc----ceEEeccCCc---ceEEEechhhc
Confidence 78887744 4456676665 55655665555
Done!