Query psy17125
Match_columns 1281
No_of_seqs 549 out of 4369
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 22:32:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ffy_A Isoleucyl-tRNA syntheta 100.0 6E-141 2E-145 1363.6 47.0 751 6-1055 35-810 (917)
2 1gax_A Valrs, valyl-tRNA synth 100.0 8E-131 3E-135 1258.0 55.2 671 16-1051 31-727 (862)
3 1ile_A Ilers, isoleucyl-tRNA s 100.0 4E-129 1E-133 1252.9 50.3 727 6-1037 25-791 (821)
4 1wz2_A Leucyl-tRNA synthetase; 100.0 1E-118 4E-123 1168.7 47.9 692 19-1037 34-825 (967)
5 4arc_A Leucine--tRNA ligase; l 100.0 3E-118 9E-123 1136.7 39.9 700 3-1059 26-836 (880)
6 2v0c_A Aminoacyl-tRNA syntheta 100.0 8E-116 3E-120 1125.1 36.0 702 3-1059 5-833 (878)
7 1wkb_A Leucyl-tRNA synthetase; 100.0 9E-112 3E-116 1093.5 49.9 679 17-1017 32-810 (810)
8 3u1f_A Methionyl-tRNA syntheta 100.0 4.1E-78 1.4E-82 749.8 32.3 485 16-1020 6-501 (542)
9 1rqg_A Methionyl-tRNA syntheta 100.0 1.2E-76 4E-81 751.1 40.9 330 624-1019 170-522 (722)
10 3h99_A Methionyl-tRNA syntheta 100.0 4.8E-73 1.6E-77 704.6 31.7 495 16-1019 15-522 (560)
11 4dlp_A Aminoacyl-tRNA syntheta 100.0 2.2E-71 7.6E-76 686.1 34.9 457 17-1020 23-500 (536)
12 2x1l_A Methionyl-tRNA syntheta 100.0 3.8E-71 1.3E-75 683.8 33.5 460 16-1019 9-492 (524)
13 3kfl_A Methionyl-tRNA syntheta 100.0 9.2E-71 3.1E-75 682.1 34.9 324 630-1019 179-516 (564)
14 2csx_A Methionyl-tRNA syntheta 100.0 1.4E-70 4.7E-75 674.4 29.5 310 627-1019 147-469 (497)
15 2d5b_A Methionyl-tRNA syntheta 100.0 3.7E-70 1.3E-74 671.9 28.4 310 627-1019 144-470 (500)
16 3c8z_A Cysteinyl-tRNA syntheta 100.0 1.6E-36 5.5E-41 361.6 22.0 144 766-962 243-389 (414)
17 1ffy_A Isoleucyl-tRNA syntheta 100.0 1.6E-37 5.4E-42 401.0 5.2 200 1055-1265 293-506 (917)
18 3tqo_A Cysteinyl-tRNA syntheta 100.0 1.6E-35 5.6E-40 351.5 21.9 126 20-159 25-151 (462)
19 3sp1_A Cysteinyl-tRNA syntheta 100.0 2.7E-35 9.2E-40 350.5 16.7 124 20-159 44-177 (501)
20 1wny_A Isoleucyl-tRNA syntheta 100.0 1.4E-35 4.7E-40 313.7 10.6 180 432-623 2-186 (186)
21 1gax_A Valrs, valyl-tRNA synth 100.0 7.7E-36 2.6E-40 381.9 9.5 187 1074-1262 250-464 (862)
22 1wny_A Isoleucyl-tRNA syntheta 100.0 1.1E-34 3.9E-39 306.6 12.1 183 175-366 2-186 (186)
23 1li5_A Cysrs, cysteinyl-tRNA s 100.0 1.7E-32 6E-37 329.9 22.6 151 766-967 219-371 (461)
24 1ile_A Ilers, isoleucyl-tRNA s 100.0 8.4E-33 2.9E-37 356.5 8.4 133 1095-1230 324-463 (821)
25 3o0a_A Leucyl-tRNA synthetase 100.0 1.7E-31 5.9E-36 287.9 1.9 156 454-613 36-208 (219)
26 1wka_A Valyl-tRNA synthetase; 100.0 6.5E-30 2.2E-34 259.2 9.6 131 432-612 3-136 (147)
27 2wfg_A Cytosolic leucyl-tRNA s 100.0 4.1E-30 1.4E-34 284.8 7.6 169 454-624 31-256 (261)
28 2ajg_A Leucyl-tRNA synthetase; 100.0 5.4E-30 1.8E-34 273.2 6.5 164 433-614 10-190 (196)
29 2wfd_A Leucyl-tRNA synthetase, 100.0 2.6E-29 8.9E-34 277.6 10.6 157 453-614 27-245 (252)
30 3o0a_A Leucyl-tRNA synthetase 100.0 2.7E-30 9.4E-35 278.5 1.2 182 175-359 2-212 (219)
31 2wfg_A Cytosolic leucyl-tRNA s 100.0 1.8E-29 6.2E-34 279.6 6.9 189 178-367 3-256 (261)
32 2wfd_A Leucyl-tRNA synthetase, 100.0 1.3E-28 4.4E-33 272.0 12.4 181 175-359 4-248 (252)
33 1wka_A Valyl-tRNA synthetase; 99.9 1.5E-28 5.1E-33 249.2 9.3 136 175-359 3-141 (147)
34 3pz6_A Leurs, leucyl-tRNA synt 99.9 4.1E-28 1.4E-32 265.9 10.0 163 454-618 78-303 (311)
35 2ajg_A Leucyl-tRNA synthetase; 99.9 1E-28 3.5E-33 263.4 4.4 168 175-359 9-193 (196)
36 3pz6_A Leurs, leucyl-tRNA synt 99.9 5.2E-27 1.8E-31 257.2 12.6 116 197-313 78-200 (311)
37 3fnr_A Arginyl-tRNA synthetase 99.9 1.2E-22 4E-27 242.9 30.9 197 770-1006 239-451 (464)
38 1iq0_A Arginyl-tRNA synthetase 99.9 9.2E-23 3.1E-27 253.3 29.8 193 800-1003 381-586 (592)
39 1wz2_A Leucyl-tRNA synthetase; 99.9 6E-25 2.1E-29 286.9 8.3 110 1112-1225 407-520 (967)
40 2zue_A Arginyl-tRNA synthetase 99.9 1.1E-21 3.8E-26 244.1 27.8 196 800-1005 411-625 (629)
41 1wkb_A Leucyl-tRNA synthetase; 99.9 4.4E-23 1.5E-27 266.5 10.8 114 1112-1229 407-527 (810)
42 2v0c_A Aminoacyl-tRNA syntheta 99.8 1.1E-22 3.9E-27 261.6 1.4 172 175-358 226-411 (878)
43 4arc_A Leucine--tRNA ligase; l 99.8 3.3E-21 1.1E-25 245.9 5.0 167 175-359 246-430 (880)
44 1irx_A Lysyl-tRNA synthetase; 99.8 6.5E-20 2.2E-24 225.1 13.0 124 19-149 19-153 (523)
45 1f7u_A Arginyl-tRNA synthetase 99.6 1.3E-14 4.4E-19 179.3 26.8 134 18-155 142-324 (607)
46 1rqg_A Methionyl-tRNA syntheta 99.6 2.8E-16 9.6E-21 199.2 6.4 78 1150-1228 166-244 (722)
47 2d5b_A Methionyl-tRNA syntheta 99.4 9.6E-14 3.3E-18 170.3 5.8 70 1155-1224 142-217 (500)
48 3u1f_A Methionyl-tRNA syntheta 99.4 1.7E-13 5.7E-18 169.8 7.6 76 1151-1226 153-235 (542)
49 2x1l_A Methionyl-tRNA syntheta 99.4 2.1E-13 7.1E-18 168.2 5.5 95 1130-1224 111-229 (524)
50 4dlp_A Aminoacyl-tRNA syntheta 99.3 5E-13 1.7E-17 165.0 6.3 93 1132-1224 126-241 (536)
51 2csx_A Methionyl-tRNA syntheta 99.3 1E-12 3.4E-17 161.0 4.0 104 17-133 3-106 (497)
52 3h99_A Methionyl-tRNA syntheta 99.3 1.9E-12 6.6E-17 160.6 5.3 72 1153-1225 184-257 (560)
53 3kfl_A Methionyl-tRNA syntheta 99.2 3.4E-12 1.2E-16 158.0 4.2 103 17-132 24-126 (564)
54 1nzj_A Hypothetical protein YA 98.0 4.8E-06 1.6E-10 94.0 6.9 93 23-148 7-100 (298)
55 3aii_A Glutamyl-tRNA synthetas 97.8 1.5E-05 5.3E-10 95.8 7.2 94 22-148 97-190 (553)
56 1qtq_A GLNRS, protein (glutami 97.8 3.5E-05 1.2E-09 92.8 9.3 95 22-148 27-121 (553)
57 2o5r_A Glutamyl-tRNA synthetas 97.7 4.2E-05 1.4E-09 91.9 7.4 96 20-148 12-116 (481)
58 2hz7_A Glutaminyl-tRNA synthet 97.7 5.1E-05 1.7E-09 95.3 8.1 95 22-148 67-161 (851)
59 4g6z_A Glutamate-tRNA ligase; 97.6 7.8E-05 2.7E-09 89.0 9.1 94 23-149 27-121 (490)
60 3al0_C Glutamyl-tRNA(Gln) amid 97.6 5.7E-05 2E-09 92.7 7.9 96 20-149 129-233 (592)
61 2cfo_A Glutamyl-tRNA synthetas 97.5 0.00011 3.9E-09 88.2 7.1 92 24-148 4-96 (492)
62 4gri_A Glutamate--tRNA ligase; 97.1 0.00037 1.3E-08 84.6 6.8 97 24-149 27-128 (512)
63 3afh_A Glutamyl-tRNA synthetas 97.0 0.0011 3.6E-08 79.7 9.0 95 22-149 26-129 (488)
64 1j09_A Glutamyl-tRNA synthetas 97.0 0.00082 2.8E-08 80.3 7.3 93 24-149 4-105 (468)
65 2ja2_A Glutamyl-tRNA synthetas 96.9 0.00098 3.4E-08 80.0 7.4 94 23-149 8-110 (498)
66 3aii_A Glutamyl-tRNA synthetas 95.6 0.0043 1.5E-07 74.8 3.0 90 767-887 279-389 (553)
67 2cyb_A Tyrosyl-tRNA synthetase 95.6 0.013 4.3E-07 67.1 6.4 59 766-827 169-227 (323)
68 2cfo_A Glutamyl-tRNA synthetas 93.9 0.067 2.3E-06 64.3 7.1 77 768-875 197-279 (492)
69 1qtq_A GLNRS, protein (glutami 93.5 0.026 8.9E-07 68.1 2.6 88 767-884 216-324 (553)
70 2yxn_A Tyrosyl-tRNA synthetase 91.7 0.065 2.2E-06 61.0 2.6 57 767-827 191-248 (322)
71 1jil_A Tyrrs, tyrosyl-tRNA syn 91.5 0.094 3.2E-06 61.8 3.6 59 766-827 185-244 (420)
72 2ts1_A Tyrosyl-tRNA synthetase 91.5 0.086 3E-06 61.9 3.3 59 766-827 184-243 (419)
73 2pid_A Tyrosyl-tRNA synthetase 91.4 0.075 2.6E-06 61.2 2.7 59 766-827 209-267 (356)
74 3tzl_A Tryptophanyl-tRNA synth 91.3 0.089 3E-06 59.8 3.1 59 766-825 138-203 (322)
75 2jan_A Tyrosyl-tRNA synthetase 91.2 0.11 3.8E-06 61.2 3.8 59 766-827 186-245 (432)
76 1n3l_A Tyrosyl-tRNA synthetase 90.7 0.12 4.2E-06 59.9 3.5 57 766-825 177-234 (372)
77 2g36_A Tryptophanyl-tRNA synth 90.5 0.14 4.9E-06 58.5 3.8 61 766-827 152-218 (340)
78 1y42_X Tyrosyl-tRNA synthetase 90.4 0.096 3.3E-06 61.1 2.3 61 766-827 231-306 (392)
79 2dlc_X Tyrosyl-tRNA synthetase 90.0 0.14 4.8E-06 59.9 3.3 57 766-825 181-239 (394)
80 2hz7_A Glutaminyl-tRNA synthet 89.7 0.17 6E-06 63.8 3.9 87 767-884 256-364 (851)
81 2el7_A Tryptophanyl-tRNA synth 89.3 0.17 5.8E-06 57.9 3.1 59 766-825 140-206 (337)
82 1h3f_A Tyrosyl-tRNA synthetase 88.6 0.34 1.2E-05 57.2 5.2 59 766-827 186-245 (432)
83 2o5r_A Glutamyl-tRNA synthetas 88.5 0.54 1.8E-05 56.4 6.8 76 768-875 219-294 (481)
84 1yi8_B Tryptophanyl-tRNA synth 88.1 0.19 6.4E-06 57.9 2.5 59 766-825 161-226 (351)
85 1j09_A Glutamyl-tRNA synthetas 85.4 1.4 4.8E-05 52.5 8.0 74 770-875 202-275 (468)
86 2zp1_A Tyrosyl-tRNA synthetase 84.2 0.72 2.5E-05 52.2 4.6 54 766-826 162-216 (314)
87 1i6k_A TRPRS, tryptophanyl-tRN 84.0 0.47 1.6E-05 54.0 3.0 59 766-825 136-206 (328)
88 2ip1_A Tryptophanyl-tRNA synth 83.9 0.56 1.9E-05 55.3 3.6 57 766-826 248-308 (432)
89 2yy5_A Tryptophanyl-tRNA synth 83.7 0.47 1.6E-05 54.4 2.9 59 766-825 146-216 (348)
90 2ja2_A Glutamyl-tRNA synthetas 83.6 1.6 5.5E-05 52.3 7.5 47 800-875 243-289 (498)
91 2dlc_X Tyrosyl-tRNA synthetase 83.3 1.7 6E-05 50.6 7.5 41 19-64 38-78 (394)
92 2cya_A Tyrosyl-tRNA synthetase 83.3 0.59 2E-05 54.0 3.4 57 766-825 176-250 (364)
93 2cyb_A Tyrosyl-tRNA synthetase 82.8 2.8 9.7E-05 47.5 8.9 75 19-116 31-105 (323)
94 3afh_A Glutamyl-tRNA synthetas 82.7 2.4 8.2E-05 50.8 8.5 47 800-875 241-287 (488)
95 3i05_A Tryptophanyl-tRNA synth 82.3 0.51 1.8E-05 54.9 2.5 54 768-825 225-281 (395)
96 1n3l_A Tyrosyl-tRNA synthetase 81.3 4.5 0.00015 46.8 9.9 39 21-64 36-74 (372)
97 3vgj_A Tyrosyl-tRNA synthetase 81.1 1.1 3.8E-05 51.8 4.7 56 766-825 199-259 (373)
98 3jxe_A Tryptophanyl-tRNA synth 80.8 0.78 2.7E-05 53.3 3.2 53 768-824 208-264 (392)
99 3jxe_A Tryptophanyl-tRNA synth 80.8 1.6 5.4E-05 50.7 5.8 79 17-116 70-148 (392)
100 3hzr_A Tryptophanyl-tRNA synth 80.7 5 0.00017 46.4 10.0 78 17-116 79-156 (386)
101 3tze_A Tryptophanyl-tRNA synth 80.2 1 3.4E-05 52.6 3.9 56 766-825 242-301 (406)
102 2j5b_A Tyrosyl-tRNA synthetase 78.8 1.2 4E-05 51.1 3.9 55 767-825 186-244 (348)
103 3hzr_A Tryptophanyl-tRNA synth 78.7 1.4 4.7E-05 51.1 4.4 54 768-825 225-281 (386)
104 3al0_C Glutamyl-tRNA(Gln) amid 77.4 2 6.8E-05 52.7 5.5 47 800-875 345-391 (592)
105 1r6u_A Tryptophanyl-tRNA synth 76.9 1 3.6E-05 53.0 2.7 53 768-825 257-314 (437)
106 1nzj_A Hypothetical protein YA 75.4 1.5 5.1E-05 49.1 3.4 24 799-822 213-236 (298)
107 1r6t_A Tryptophanyl-tRNA synth 75.1 1.2 4.2E-05 53.1 2.7 55 768-825 304-361 (477)
108 3a04_A Tryptophanyl-tRNA synth 74.6 2.2 7.6E-05 49.3 4.7 44 16-64 66-109 (372)
109 2cyc_A Tyrosyl-tRNA synthetase 74.0 4.5 0.00015 46.8 7.1 80 21-116 34-114 (375)
110 1i6k_A TRPRS, tryptophanyl-tRN 73.7 4.5 0.00016 45.9 6.9 64 30-116 10-73 (328)
111 3hv0_A Tryptophanyl-tRNA synth 72.3 1.9 6.6E-05 50.1 3.4 52 770-825 223-278 (393)
112 2cya_A Tyrosyl-tRNA synthetase 68.6 2.8 9.5E-05 48.4 3.6 75 21-116 36-110 (364)
113 2cyc_A Tyrosyl-tRNA synthetase 68.5 2 7E-05 49.7 2.5 57 766-825 179-263 (375)
114 3hv0_A Tryptophanyl-tRNA synth 67.4 16 0.00056 42.3 9.8 78 18-116 72-150 (393)
115 2pid_A Tyrosyl-tRNA synthetase 67.3 3.4 0.00012 47.4 4.0 31 30-64 55-86 (356)
116 2j5b_A Tyrosyl-tRNA synthetase 66.9 5.4 0.00018 45.6 5.5 78 19-116 39-116 (348)
117 3p0j_A Tyrosyl-tRNA synthetase 66.0 3.7 0.00013 51.3 4.2 56 766-824 182-241 (690)
118 3tze_A Tryptophanyl-tRNA synth 65.4 12 0.00041 43.5 8.1 78 17-116 98-176 (406)
119 3i05_A Tryptophanyl-tRNA synth 65.1 9.6 0.00033 44.3 7.2 78 17-116 75-153 (395)
120 3sz3_A Tryptophanyl-tRNA synth 64.6 4.5 0.00015 46.1 4.2 65 29-116 14-78 (341)
121 3tzl_A Tryptophanyl-tRNA synth 63.6 2.4 8.2E-05 48.0 1.8 65 29-116 11-75 (322)
122 1y42_X Tyrosyl-tRNA synthetase 63.1 7.3 0.00025 45.3 5.7 31 30-64 73-104 (392)
123 3sz3_A Tryptophanyl-tRNA synth 63.0 1.8 6E-05 49.5 0.5 58 766-824 142-214 (341)
124 3foc_A Tryptophanyl-tRNA synth 62.4 3.3 0.00011 48.8 2.7 52 770-824 290-344 (451)
125 3foc_A Tryptophanyl-tRNA synth 62.1 15 0.00051 43.3 8.1 79 17-116 88-167 (451)
126 1jil_A Tyrrs, tyrosyl-tRNA syn 61.3 5.1 0.00017 47.0 4.0 33 30-66 41-74 (420)
127 3n9i_A Tryptophanyl-tRNA synth 59.7 5.2 0.00018 45.6 3.6 58 766-824 151-220 (346)
128 2zp1_A Tyrosyl-tRNA synthetase 58.9 6.1 0.00021 44.5 4.0 73 19-114 27-99 (314)
129 2el7_A Tryptophanyl-tRNA synth 58.4 4.4 0.00015 46.1 2.7 32 30-64 10-42 (337)
130 1h3f_A Tyrosyl-tRNA synthetase 56.9 12 0.00039 44.1 6.0 41 20-65 37-78 (432)
131 3n9i_A Tryptophanyl-tRNA synth 56.2 6.5 0.00022 44.8 3.6 65 29-116 23-87 (346)
132 3tqo_A Cysteinyl-tRNA syntheta 54.5 22 0.00077 42.0 8.0 150 766-966 222-372 (462)
133 3sp1_A Cysteinyl-tRNA syntheta 54.0 10 0.00035 45.3 5.0 154 766-957 252-412 (501)
134 3prh_A Tryptophanyl-tRNA synth 50.1 9.7 0.00033 44.0 3.8 60 766-825 170-240 (388)
135 2ts1_A Tyrosyl-tRNA synthetase 49.6 11 0.00037 44.1 4.2 32 30-65 39-71 (419)
136 2g36_A Tryptophanyl-tRNA synth 48.3 11 0.00038 42.8 3.9 39 20-63 13-51 (340)
137 2yy5_A Tryptophanyl-tRNA synth 48.0 6.6 0.00023 44.9 2.0 64 30-116 13-76 (348)
138 2yxn_A Tyrosyl-tRNA synthetase 46.5 12 0.00041 42.2 3.8 31 30-64 42-73 (322)
139 2jan_A Tyrosyl-tRNA synthetase 46.0 13 0.00046 43.5 4.2 32 29-64 40-72 (432)
140 3c8z_A Cysteinyl-tRNA syntheta 44.0 13 0.00046 43.5 3.8 116 19-151 40-156 (414)
141 4g6z_A Glutamate-tRNA ligase; 44.0 35 0.0012 40.7 7.3 47 800-875 250-296 (490)
142 3a04_A Tryptophanyl-tRNA synth 43.6 13 0.00044 42.9 3.5 58 767-824 208-267 (372)
143 1yi8_B Tryptophanyl-tRNA synth 41.3 10 0.00035 43.4 2.2 65 30-116 31-95 (351)
144 3prh_A Tryptophanyl-tRNA synth 40.8 11 0.00036 43.7 2.2 76 17-116 28-107 (388)
145 1r6u_A Tryptophanyl-tRNA synth 40.5 27 0.00091 41.1 5.6 79 16-116 104-183 (437)
146 1r6t_A Tryptophanyl-tRNA synth 39.5 25 0.00084 41.9 5.2 78 17-116 152-230 (477)
147 2ip1_A Tryptophanyl-tRNA synth 37.1 21 0.00071 42.0 3.9 77 19-116 101-178 (432)
148 3vgj_A Tyrosyl-tRNA synthetase 36.3 23 0.00079 40.8 4.1 73 23-116 59-132 (373)
149 3p0j_A Tyrosyl-tRNA synthetase 31.8 25 0.00084 43.9 3.6 77 19-116 39-116 (690)
150 1li5_A Cysrs, cysteinyl-tRNA s 28.6 14 0.00049 43.8 0.7 125 18-159 22-148 (461)
No 1
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=5.6e-141 Score=1363.64 Aligned_cols=751 Identities=37% Similarity=0.661 Sum_probs=670.6
Q ss_pred hHHHHHHHHcCCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcc--cC
Q psy17125 6 ELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD--KL 83 (1281)
Q Consensus 6 ~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~--~~ 83 (1281)
++|+++++..+++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|++||||||+|||.+|++++- ++
T Consensus 35 ~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~ 114 (917)
T 1ffy_A 35 DQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKK 114 (917)
T ss_dssp THHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTT
T ss_pred CCcccchhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchh
Confidence 5677776665789999999999999999999999999999999999999999999999999999999999999841 34
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccc
Q psy17125 84 LSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTAL 163 (1281)
Q Consensus 84 ~~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~l 163 (1281)
+++++++++|++|+.++++.|+++|++||+++||+| +|+|+||.|+++++++|.+|+++|+||++.++|+|||.|+|+|
T Consensus 115 ~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~-~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~L 193 (917)
T 1ffy_A 115 MSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFND-PYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSL 193 (917)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTS-CEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCC-CeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCc
Confidence 678999999999999999999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHH
Q psy17125 164 AESELEYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVE 243 (1281)
Q Consensus 164 ad~ev~~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~ 243 (1281)
||+||+|++ +.++++||+|++.+..
T Consensus 194 ae~eVey~d-~~~~~~~v~f~~~~~~------------------------------------------------------ 218 (917)
T 1ffy_A 194 AEAEIEYHD-KRSASIYVAFNVKDDK------------------------------------------------------ 218 (917)
T ss_dssp CGGGEEEEE-EEEEEEECCBCCCSST------------------------------------------------------
T ss_pred chhhhhccc-ccCceEEEEEEecccc------------------------------------------------------
Confidence 999999987 6777777777542100
Q ss_pred hhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceecc
Q psy17125 244 SLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLIT 323 (1281)
Q Consensus 244 ~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~ 323 (1281)
|+
T Consensus 219 ---------------------------------------------------g~--------------------------- 220 (917)
T 1ffy_A 219 ---------------------------------------------------GV--------------------------- 220 (917)
T ss_dssp ---------------------------------------------------TG---------------------------
T ss_pred ---------------------------------------------------cc---------------------------
Confidence 00
Q ss_pred CCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhc
Q psy17125 324 NQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVG 403 (1281)
Q Consensus 324 ~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~ 403 (1281)
|
T Consensus 221 ----------------------------------------------~--------------------------------- 221 (917)
T 1ffy_A 221 ----------------------------------------------V--------------------------------- 221 (917)
T ss_dssp ----------------------------------------------G---------------------------------
T ss_pred ----------------------------------------------c---------------------------------
Confidence 0
Q ss_pred ccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccc
Q psy17125 404 NILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYS 483 (1281)
Q Consensus 404 ~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~ 483 (1281)
..+.+++||||||||||||+||||||+++|+
T Consensus 222 -------------------------------------------------~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~ 252 (917)
T 1ffy_A 222 -------------------------------------------------DADAKFIIWTTTPWTIPSNVAITVHPELKYG 252 (917)
T ss_dssp -------------------------------------------------GTTCCBCCEESCGGGSSCCBCCCCCTTCCCC
T ss_pred -------------------------------------------------CCCCeEEEEeCCcchhhhceEEEECCCCceE
Confidence 0013578999999999999999999999999
Q ss_pred eecccCceEEeehhhHHhHHhhccC-Cee--EeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCC
Q psy17125 484 VASVKGANVIVAKCLVENLKWTFQT-DID--VVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAH 560 (1281)
Q Consensus 484 ~~~~~~~~~i~a~~~~~~~~~~~~~-~~~--~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH 560 (1281)
++++.++.+++++++++.+..+.+. .++ ++++++|.+|+|+++.||++++. +||++++||++++|||+||+||||
T Consensus 253 ~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~--~pvi~~~~V~~~~GTG~V~~~Pah 330 (917)
T 1ffy_A 253 QYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRE--SLVINGDHVTTDAGTGCVHTAPGH 330 (917)
T ss_dssp CCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCTTCCS--BCCCCCCSSCCSSSCSCCCBCTTS
T ss_pred EEEeCCceeehHHHHHHHHHHhcCcccceeeeeeeeecccccCCEEECCCCCCe--eeEEeccccccCCCCceeEeCCCC
Confidence 9999888999999999999988875 345 78899999999999999998765 999999999999999999999999
Q ss_pred ChhHHHHHHHcCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCCceEEcc
Q psy17125 561 GQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKPVILKA 638 (1281)
Q Consensus 561 ~~~Dy~~~~~~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~v~~~~ 638 (1281)
|++||+++++||||++++||++|+|+++++ .|.|++++ +|++.|++.|++ .+++.+.+.|++|+|||||+|+++++
T Consensus 331 ~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~-~~~G~~v~-~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~ 408 (917)
T 1ffy_A 331 GEDDYIVGQQYELPVISPIDDKGVFTEEGG-QFEGMFYD-KANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRA 408 (917)
T ss_dssp CSHHHHTTTSSSCCCCCCCCSSSCCCTTCS-SCSSSCSS-HHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEE
T ss_pred CHHHHHHHHHcCCCeeeeECCCceeCCccc-ccCCcCHH-HHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEe
Confidence 999999999999999999999999998874 69999998 799999999999 57788899999999999999999999
Q ss_pred ccccccChhhHHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec-CCeEEechhhHHHHHhhhh
Q psy17125 639 SQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD-GDTIIVNEANIKHFCTLID 717 (1281)
Q Consensus 639 ~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~-~~~i~v~~~~~~~i~~~~~ 717 (1281)
++|||++++++++++++++++++|+|++.++++.+||++++||||||||+||+|||+|+| ++.+.++.+++.++...++
T Consensus 409 t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~ 488 (917)
T 1ffy_A 409 TPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFA 488 (917)
T ss_dssp EEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHH
T ss_pred ccceEeeHHHHHHHHHHHHhcCcccCHHHHHHHHHHHhcCccceeeccCCcCcccceeeCCCCCEecCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999998 4677788888888888888
Q ss_pred hcCCCCccCcCcccccccc--c--cc-cccccccccccccccCCcchhhhccC-----CCccceeeccceeeehhhHHHH
Q psy17125 718 EHGPDFWWSLSVEQLLNTS--D--VN-SNVTKSNDILDIWFDSGISWSHVLKD-----KPAHVYMEGMDQINGWFMSSLL 787 (1281)
Q Consensus 718 ~~g~d~~~~~~~~~l~~~~--~--~~-~~~~~~~dvlD~WFdS~l~w~~~l~~-----~p~dl~~~G~Dii~~wf~~~l~ 787 (1281)
..|.+.||..+++++++.. + |+ ..+.+++|+||+|||||++|+++++. ||+|+|++|+||+++||+++++
T Consensus 489 ~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~ 568 (917)
T 1ffy_A 489 EHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSIT 568 (917)
T ss_dssp HHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHH
T ss_pred hcCCcccccCCHHHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCCchhcCCCceEEEEEecccccHHHHHHH
Confidence 8898889887777776532 1 23 46889999999999999999887532 8999999999999999999999
Q ss_pred HHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHH
Q psy17125 788 TSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLR 867 (1281)
Q Consensus 788 ~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR 867 (1281)
.+.++.+..||+++++||||+|.+|+|||||+||+|+|.++++ +||+|++|
T Consensus 569 ~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~-----------------------------~yGaDalR 619 (917)
T 1ffy_A 569 TSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVK-----------------------------QKGADIAR 619 (917)
T ss_dssp HHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHH-----------------------------HTCHHHHH
T ss_pred HHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHH-----------------------------hCCHHHHH
Confidence 9999999999999999999998899999999999999999999 99999999
Q ss_pred HHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCC----CCCcCcHHHHHHHHHHHHHHHHHHHHHhh
Q psy17125 868 WWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSES----TGSISRYVDVYMLKRLCEFQNTMDTLYGE 943 (1281)
Q Consensus 868 ~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~----~~~~~~~~d~~il~~l~~~~~~v~~~~e~ 943 (1281)
||+++ ++.++|++|+.+.+.++.+++++|+|++|++++++.++.+. ....+...|+|++++++++++++.++|++
T Consensus 620 ~~lls-~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~ 698 (917)
T 1ffy_A 620 LWVSS-TDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYEN 698 (917)
T ss_dssp HHHHT-SCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhc-cCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999 66789999999999999999999999999999988765421 11235678999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCCCC
Q psy17125 944 FQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTF 1023 (1281)
Q Consensus 944 ~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~ 1023 (1281)
|+|++|++.+++|+.++++++|++..|++++++..++..|++++.+++.+++.+++||+|||||+|||+|+.|+...
T Consensus 699 ~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~~--- 775 (917)
T 1ffy_A 699 FDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVK--- 775 (917)
T ss_dssp TCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTCS---
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHcccCC---
Confidence 99999999999999668999999999999998765556677888999999999999999999999999999997531
Q ss_pred cccccccccccccc---chhheeeeeccccccccc
Q psy17125 1024 SSFCHFKVYLQYSG---SIAKRILYCDSINGEARL 1055 (1281)
Q Consensus 1024 ~s~~~~~~~p~~~~---~i~kd~~y~~~vngk~R~ 1055 (1281)
..+++.+.||.+++ .+.+......+++++.+.
T Consensus 776 ~~sv~~~~wP~~~~~~~~l~~~~~~~~~v~~~v~~ 810 (917)
T 1ffy_A 776 EESVHLADMPKVVEVDQALLDKWRTFMNLRDDVNR 810 (917)
T ss_dssp SSSGGGSCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEecCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 23577788888754 244455566666654443
No 2
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=8e-131 Score=1257.96 Aligned_cols=671 Identities=25% Similarity=0.402 Sum_probs=588.2
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcc------cCCCHHHH
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD------KLLSPLDI 89 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~------~~~~~~e~ 89 (1281)
+++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|++||||||+|+|.+++++.+ .+++++++
T Consensus 31 ~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f 110 (862)
T 1gax_A 31 SGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKF 110 (862)
T ss_dssp CCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHH
T ss_pred CCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHH
Confidence 367899999999999999999999999999999999999999999999999999999999886542 24567899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccc
Q psy17125 90 RKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELE 169 (1281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~ 169 (1281)
++.|++|++++++.++++|++||+++||+| +|+|+|+.|+++|+|+|.+|+++|+||++.++|+|||.|+|+|||+||+
T Consensus 111 ~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r-~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~ 189 (862)
T 1gax_A 111 LERVWQWKEESGGTILKQLKRLGASADWSR-EAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVE 189 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCGGG-CEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccCCC-CcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCccccccccc
Confidence 999999999999999999999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhc
Q psy17125 170 YKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTF 249 (1281)
Q Consensus 170 ~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~ 249 (1281)
|++ ..++++||+|++.+ + .+++|||||||||+||+||+|||+.+
T Consensus 190 ~~e-~~g~~~~v~f~~~~-------~---~~l~v~TTrPeTl~g~~avav~P~~~------------------------- 233 (862)
T 1gax_A 190 TEP-TPGKLYTLRYEVEG-------G---GFIEIATVRPETVFADQAIAVHPEDE------------------------- 233 (862)
T ss_dssp ECC-EEEEEEEEECCCSS-------S---CCCEEEESCSGGGTTCCCEEECSSCC-------------------------
T ss_pred ccc-ccceEEEEEEEecC-------C---CEEEEEeCCccccccceEEEECCCcc-------------------------
Confidence 987 77888999998753 1 36777777777777777777777421
Q ss_pred cCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcC
Q psy17125 250 QTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYS 329 (1281)
Q Consensus 250 ~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~ 329 (1281)
T Consensus 234 -------------------------------------------------------------------------------- 233 (862)
T 1gax_A 234 -------------------------------------------------------------------------------- 233 (862)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhccccccc
Q psy17125 330 PDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRV 409 (1281)
Q Consensus 330 ~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~ 409 (1281)
T Consensus 234 -------------------------------------------------------------------------------- 233 (862)
T 1gax_A 234 -------------------------------------------------------------------------------- 233 (862)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccC
Q psy17125 410 GITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG 489 (1281)
Q Consensus 410 ~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~ 489 (1281)
T Consensus 234 -------------------------------------------------------------------------------- 233 (862)
T 1gax_A 234 -------------------------------------------------------------------------------- 233 (862)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHH
Q psy17125 490 ANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLAL 569 (1281)
Q Consensus 490 ~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~ 569 (1281)
+.++|+|+++.||++++. +||++++||++++|||+||+|||||++||++++
T Consensus 234 ---------------------------ry~~l~G~~~~~P~~~~~--ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~ 284 (862)
T 1gax_A 234 ---------------------------RYRHLLGKRARIPLTEVW--IPILADPAVEKDFGTGALKVTPAHDPLDYEIGE 284 (862)
T ss_dssp ---------------------------TTCSCTTCCCBCTTCCCB--CCEEECTTCCTTSSSSEEECCGGGCHHHHHHHH
T ss_pred ---------------------------HHHHHcCCEEECCCCCCe--eeEEeccccccCCCCcceEecCCCCchHHHHHH
Confidence 012356778888998755 999999999999999999999999999999999
Q ss_pred HcCCCeecccCCCCccCCCCC-CCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCCceEEccccccccCh
Q psy17125 570 AEKIPVLNLITNQGKYSPDAG-PGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKPVILKASQQWFIDT 646 (1281)
Q Consensus 570 ~~~lpi~~vid~~G~~~~~~~-~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~ 646 (1281)
+||||++++||.+|+++++++ +.|.|++++ +|++.|++.|++ .+++.+.+.|++|+|||||+||++++++|||+++
T Consensus 285 ~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~-~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~ 363 (862)
T 1gax_A 285 RHGLKPVSVINLEGRMEGERVPEALRGLDRF-EARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRM 363 (862)
T ss_dssp HTTCCCCCSBCTTSBBCSSSSCTTTSSSBSS-HHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECH
T ss_pred HcCCCccceeCCCCccccccCCcccCCcCHH-HHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEh
Confidence 999999999999999998771 369999998 799999999998 4667788999999999999999999999999999
Q ss_pred hhHHHHHHHhhh--cccccchhHHHHHHHHHHcCCCcccccccCCCccceeEec--CCeEEechhhHHHHHhhhhhcCCC
Q psy17125 647 ERIKPEALACLE--EVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD--GDTIIVNEANIKHFCTLIDEHGPD 722 (1281)
Q Consensus 647 ~~~~~~~~e~~~--~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~--~~~i~v~~~~~~~i~~~~~~~g~d 722 (1281)
++++++++++++ +++++|++.++++.+||++++||||||||+||+|||+|+| |+++||+.... + . .+
T Consensus 364 ~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i~v~~~~~--l----~---~~ 434 (862)
T 1gax_A 364 RPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPER--Y----L---ED 434 (862)
T ss_dssp HHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEECCCGGG--T----T---CC
T ss_pred HHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCEEEEecccc--c----c---cc
Confidence 999999999996 5789999999999999999999999999999999999998 58899976321 0 0 00
Q ss_pred CccCcCccccccccccccccccccccccccccCCcchhhhcc---C-------CCccceeeccceeeehhhHHHHHHHHh
Q psy17125 723 FWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLK---D-------KPAHVYMEGMDQINGWFMSSLLTSVAL 792 (1281)
Q Consensus 723 ~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~---~-------~p~dl~~~G~Dii~~wf~~~l~~~~~l 792 (1281)
.+ ....+....+.+++||||+||||+++++..++ + ||+|+|++|+||+++|+.++++++..+
T Consensus 435 ----~~----~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~ 506 (862)
T 1gax_A 435 ----PT----SCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHF 506 (862)
T ss_dssp ----CC----SCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHH
T ss_pred ----ch----hhhhcCchheecCCcccceeeccCCcchhhccCCCchHHHHhhCCceEEecCccccccHHHHHHHHHHHh
Confidence 00 11222333688999999999999986554443 1 899999999999999999999999988
Q ss_pred cCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHh
Q psy17125 793 KHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAA 872 (1281)
Q Consensus 793 ~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~ 872 (1281)
.+..||++|++||+++|.+|+|||||+||+|+|.++++ +||+|++||||++
T Consensus 507 ~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~-----------------------------~yGaDalR~~ll~ 557 (862)
T 1gax_A 507 MGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVE-----------------------------RYGADALRFALIY 557 (862)
T ss_dssp SSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHH-----------------------------HHCHHHHHHHHHH
T ss_pred cCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHH-----------------------------HcChHHHHHHHHh
Confidence 89999999999999999999999999999999999999 9999999999999
Q ss_pred cCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q psy17125 873 HASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRV 952 (1281)
Q Consensus 873 ~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~ 952 (1281)
.++.++|++|+.+.+.+.+++++|+||++|++..++.++.+. .......|+|+++++++++++++++|++|+|++|++.
T Consensus 558 ~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~-~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~ 636 (862)
T 1gax_A 558 LATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAK-EDTPTLADRFMRSRLSRGVEEITALYEALDLAQAARE 636 (862)
T ss_dssp HCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCC-BCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 988899999999999999999999999999998877654321 1235788999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCCCCccccccccc
Q psy17125 953 LLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVY 1032 (1281)
Q Consensus 953 i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~ 1032 (1281)
+++|+++++||+|++..|+|++.+ +.+++.+++++++.+++||||||||+|||+|+.|+. ..+++.+.|
T Consensus 637 l~~f~~~~~~n~Yie~~k~~l~~~------~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~-----~~sv~~~~w 705 (862)
T 1gax_A 637 VYELVWSEFCDWYLEAAKPALKAG------NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG-----KEELALEAW 705 (862)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHTT------BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC-----CSCGGGSCC
T ss_pred HHHHHHHHhhHHHHHHcchhhhcc------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC-----CCeEEecCC
Confidence 999998899999999999998653 446778999999999999999999999999999963 234667788
Q ss_pred ccccc---chhheeeeeccccc
Q psy17125 1033 LQYSG---SIAKRILYCDSING 1051 (1281)
Q Consensus 1033 p~~~~---~i~kd~~y~~~vng 1051 (1281)
|.++. .+.....+..++++
T Consensus 706 P~~~~~d~~~~~~~~~~~~v~~ 727 (862)
T 1gax_A 706 PEPGGRDEEAERAFEALKQAVT 727 (862)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHHH
Confidence 87642 34445556666665
No 3
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=3.7e-129 Score=1252.94 Aligned_cols=727 Identities=27% Similarity=0.478 Sum_probs=614.2
Q ss_pred hHHHHHHHHcCCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhccc---
Q psy17125 6 ELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDK--- 82 (1281)
Q Consensus 6 ~~~~~~~~~~~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~--- 82 (1281)
++|+++.+.++++++|++++|||||||.|||||++|++++|+++||+||+||+|++++||||||+|||.+|+++.|.
T Consensus 25 ~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~ 104 (821)
T 1ile_A 25 KIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSK 104 (821)
T ss_dssp THHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSH
T ss_pred CCcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhccccc
Confidence 45566555446889999999999999999999999999999999999999999999999999999999999997541
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCC
Q psy17125 83 ----LLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPS 158 (1281)
Q Consensus 83 ----~~~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~ 158 (1281)
.++.+++++.|++|+.++++.|+++|++||+++||+| +++|+||.|+++++|+|.+|+++|+||++.++|+|||.
T Consensus 105 ~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~-~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~ 183 (821)
T 1ile_A 105 REIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLED-AYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPR 183 (821)
T ss_dssp HHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEE-EEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETT
T ss_pred chHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCC-CeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCC
Confidence 2345678889999999999999999999999999996 99999999999999999999999999999999999999
Q ss_pred ccccccccccc--cCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEE
Q psy17125 159 SRTALAESELE--YKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVI 236 (1281)
Q Consensus 159 ~~t~lad~ev~--~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i 236 (1281)
|+|+|||+||+ |++ ++++++||+|++.+.... ...+.+++||||||||||||+||+|||+.+|++++++++.+|
T Consensus 184 ~~t~Lad~ev~~G~~~-~~~~~~~v~f~~~~~~~~---~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i 259 (821)
T 1ile_A 184 CGTPLSSHEVALGYKE-IQDPSVYVRFPLKEPKKL---GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALI 259 (821)
T ss_dssp TTEECCHHHHHHTEEE-EEEEEEEEEEEBSSGGGG---TCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEE
T ss_pred CCCcccHhHhhcCccc-ccCceEEEEEEecCCccc---CCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEE
Confidence 99999999994 665 889999999998652110 123689999999999999999999999999999998889999
Q ss_pred eehhhHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCC
Q psy17125 237 VAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKI 316 (1281)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l 316 (1281)
+++.+++++..+
T Consensus 260 ~a~~~~~~~~~~-------------------------------------------------------------------- 271 (821)
T 1ile_A 260 LEEGLGRKLLGE-------------------------------------------------------------------- 271 (821)
T ss_dssp EETTHHHHHTCT--------------------------------------------------------------------
T ss_pred ehHHHHHHHHhh--------------------------------------------------------------------
Confidence 998876532100
Q ss_pred CcceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhh
Q psy17125 317 PVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEA 396 (1281)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~ 396 (1281)
T Consensus 272 -------------------------------------------------------------------------------- 271 (821)
T 1ile_A 272 -------------------------------------------------------------------------------- 271 (821)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCccccccc
Q psy17125 397 LVCKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAF 476 (1281)
Q Consensus 397 ~~~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v 476 (1281)
T Consensus 272 -------------------------------------------------------------------------------- 271 (821)
T 1ile_A 272 -------------------------------------------------------------------------------- 271 (821)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccceecccCceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCcc-CcceeeeeCCccccCCCCceEe
Q psy17125 477 NPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKE-QRDLKLLPAGFVSSSKGTGLVH 555 (1281)
Q Consensus 477 ~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~-~~~ipIi~~~~V~~~~GTG~V~ 555 (1281)
..+++++++|++|+|+.+.||+... .+.+||++++||++++|||+||
T Consensus 272 --------------------------------~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~ 319 (821)
T 1ile_A 272 --------------------------------GTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVH 319 (821)
T ss_dssp --------------------------------TSCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEE
T ss_pred --------------------------------CcEEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceE
Confidence 0123345568888888888888521 1239999999999999999999
Q ss_pred cCCCCChhHHHHHHHcCCCeecccCCCCccCCCCCCCCCCceeccccchhHHhhhcc--ccccccccccccCcccCCCCc
Q psy17125 556 CAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSYPYDWRTKKP 633 (1281)
Q Consensus 556 ~~PaH~~~Dy~~~~~~~lpi~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~p~~~Rsg~~ 633 (1281)
+|||||++||++|++||||++++||++|+|++. + |.|+.++ +|++.|++.|++ .+++.+.+.|++|+|||||+|
T Consensus 320 ~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~-~--~~G~~~~-~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~ 395 (821)
T 1ile_A 320 QAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P--FKGLYFR-EANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTP 395 (821)
T ss_dssp CCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSG-G--GTTCBHH-HHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCB
T ss_pred ecCCCCHHHHHHHHHcCCCcceeECCCCcCccc-C--cCCCCHH-HHHHHHHHHHHhCCCeeeeecccccCCEecCCCCE
Confidence 999999999999999999999999999999987 4 9999997 799999999998 467778899999999999999
Q ss_pred eEEccccccccChhhHHHHHHHhhhcccccchhHH-HHHHHHHHcCCCcccccccCCCccceeEec--CCeEEechhhHH
Q psy17125 634 VILKASQQWFIDTERIKPEALACLEEVNFVPESAK-KTLRDQIAQRPYWCISRQRVWGVPIPVFYD--GDTIIVNEANIK 710 (1281)
Q Consensus 634 v~~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r-~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~--~~~i~v~~~~~~ 710 (1281)
|++++++|||++++++++++++++++++++|+..+ +++.+||++++||||||||+||+|||+|+| ++.+++... +.
T Consensus 396 ~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~-~~ 474 (821)
T 1ile_A 396 LMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGS-FQ 474 (821)
T ss_dssp CEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCS-HH
T ss_pred EEEEecchhhhchHHHHHHHHHHhcCeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecCCCcEEeeCc-HH
Confidence 99999999999999999999999999999999984 589999999999999999999999999998 455555321 22
Q ss_pred HHHhhhhhcCCCCcc--CcCc----ccc-ccccccccccccccccccccccCCcchhhhcc------C-----CCcccee
Q psy17125 711 HFCTLIDEHGPDFWW--SLSV----EQL-LNTSDVNSNVTKSNDILDIWFDSGISWSHVLK------D-----KPAHVYM 772 (1281)
Q Consensus 711 ~i~~~~~~~g~d~~~--~~~~----~~l-~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~------~-----~p~dl~~ 772 (1281)
.+.. .+.+.+- .... +.+ .... |+..+.+++||||+||||++++...++ + ||+|+|+
T Consensus 475 ~l~~----~~~~~~~~~~~l~~~~~d~~~~~~~-~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~ 549 (821)
T 1ile_A 475 ELKA----RATKPLPEPFDPHRPYVDQVELACA-CGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIA 549 (821)
T ss_dssp HHHH----HBSSCCCSSCCCSHHHHTTCEEECT-TSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEE
T ss_pred HHHh----hccccccchhhhccccccccccCCC-CCCchhhcccccceecccccchHhhcCCCccchHHHhhcCCccccc
Confidence 2211 1211100 0000 000 1111 456789999999999999875433332 1 8999999
Q ss_pred eccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCccccccccc
Q psy17125 773 EGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDIT 852 (1281)
Q Consensus 773 ~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~ 852 (1281)
+|+||++||+.++++.+.++.+..||+++++||++++.+|+|||||+||+|+|.++++
T Consensus 550 ~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~---------------------- 607 (821)
T 1ile_A 550 EGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIR---------------------- 607 (821)
T ss_dssp EEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHT----------------------
T ss_pred chhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHH----------------------
Confidence 9999999999999999999989999999999999998899999999999999999999
Q ss_pred ccccCCCCCchhHHHHHHHhcCCCCCccccCcchhcc-chHHHHHHHHHHHHHH--HhhcCCCC-CC--CCcCcHHHHHH
Q psy17125 853 QGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNS-SQDDVQKIRSSLRYLL--GVLHNHSE-ST--GSISRYVDVYM 926 (1281)
Q Consensus 853 ~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~-~~~~~~kl~n~~r~~~--~~l~~~~~-~~--~~~~~~~d~~i 926 (1281)
+||+|++||||++.++.++|++|+.+.+.+ +++++++++|+++++. .++.++.+ .. .......|+|+
T Consensus 608 -------~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 680 (821)
T 1ile_A 608 -------KFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWL 680 (821)
T ss_dssp -------TTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHH
T ss_pred -------HhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccccccCCHHHHHH
Confidence 999999999999999889999999999998 5889999999999875 23344332 11 12356789999
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccC
Q psy17125 927 LKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMP 1006 (1281)
Q Consensus 927 l~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P 1006 (1281)
+++++++++++.++|++|+|++|++.+++|++++++|+|++..|++++.... +.+|++++.+++++++.+++||+||||
T Consensus 681 l~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~-~~~r~~~~~~l~~~l~~~~~lLaP~~P 759 (821)
T 1ile_A 681 LARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNED-ALDREAAYATLYEALVLVATLAAPFTP 759 (821)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTT-TSSTTHHHHHHHHHHHHHHHHHTTTST
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC-cHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 9999999999999999999999999999999999999999999988776533 223456788899999999999999999
Q ss_pred ccHHHHHhhCCCCCCCCcc-cccccccccccc
Q psy17125 1007 HLAEEVYSHLPSRQGTFSS-FCHFKVYLQYSG 1037 (1281)
Q Consensus 1007 ~laeel~~~L~~~~~~~~s-~~~~~~~p~~~~ 1037 (1281)
|+|||+|+.|+.....-.. +++.+.||.+++
T Consensus 760 ~~aeelw~~L~~~~~~~~~~sv~~~~~P~~~~ 791 (821)
T 1ile_A 760 FLAEVLWQNLVRSVRLEAKESVHLADWPEADP 791 (821)
T ss_dssp THHHHHHHHHTTTTSTTSCSSGGGSCCCCCCT
T ss_pred hHHHHHHHhccccccCCCCCceEeecCCCCCc
Confidence 9999999999753110112 577888998764
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-118 Score=1168.75 Aligned_cols=692 Identities=22% Similarity=0.310 Sum_probs=566.2
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcc------------cCCCH
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD------------KLLSP 86 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~------------~~~~~ 86 (1281)
++|+|++|||||||.|||||++|++++|+++||+||+||+|+|++||||||+|||..|.+... .+++.
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~ 113 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPE 113 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCH
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCH
Confidence 889999999999999999999999999999999999999999999999999999988775420 13566
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCC--HHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcccc
Q psy17125 87 LDIRK--KAKNFALETINTQKAEFESWGVLADWEHNCYHTFD--KEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTA 162 (1281)
Q Consensus 87 ~e~~~--~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~--~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~ 162 (1281)
+++.+ .|++|+.++++.|+++|++||+++||+| +|.|+| |.|+++++|+|.+|+++|+||++.++|+|||.|+|+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r-~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~ 192 (967)
T 1wz2_A 114 EILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSR-EFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTP 192 (967)
T ss_dssp HHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTS-CCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCC-CeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCC
Confidence 66643 5899999999999999999999999996 999999 999999999999999999999999999999999999
Q ss_pred ccccccccCCC-CcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecC----ceEEe
Q psy17125 163 LAESELEYKPD-HVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG----ANVIV 237 (1281)
Q Consensus 163 lad~ev~~~~~-~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~----~~~i~ 237 (1281)
|||+||++.+. ..+..++|+|++.+ +..+.+++||||||||||||+||+|||+.+|+++++.| +.+|+
T Consensus 193 Lad~Ev~~~~~~~~~~~~~v~f~~~~-------~~~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i~ 265 (967)
T 1wz2_A 193 LGDHDLMEGEDVPILDYIIIKFELRE-------NGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIV 265 (967)
T ss_dssp CCSSSCSSCCCCCEECCEEEEEECCC-------SSSCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEEE
T ss_pred cchhhhccCCCceeceeEEEEEEecC-------CCCceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCCcceeeeh
Confidence 99999987652 34556899999854 11347999999999999999999999999999998777 77888
Q ss_pred ehhhHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCC
Q psy17125 238 AKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIP 317 (1281)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~ 317 (1281)
++++++++..
T Consensus 266 a~~~~~~~~~---------------------------------------------------------------------- 275 (967)
T 1wz2_A 266 SKEAAYKLSF---------------------------------------------------------------------- 275 (967)
T ss_dssp EHHHHHHHHH----------------------------------------------------------------------
T ss_pred HHHHHHHHHh----------------------------------------------------------------------
Confidence 8766542210
Q ss_pred cceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhh
Q psy17125 318 VLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 397 (1281)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~ 397 (1281)
T Consensus 276 -------------------------------------------------------------------------------- 275 (967)
T 1wz2_A 276 -------------------------------------------------------------------------------- 275 (967)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccC
Q psy17125 398 VCKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFN 477 (1281)
Q Consensus 398 ~~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~ 477 (1281)
T Consensus 276 -------------------------------------------------------------------------------- 275 (967)
T 1wz2_A 276 -------------------------------------------------------------------------------- 275 (967)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccceecccCceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecC
Q psy17125 478 PALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCA 557 (1281)
Q Consensus 478 p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~ 557 (1281)
+. .+.+++++++|++|+|+++.||+++.. +||++++||++++|||+||+|
T Consensus 276 ---------------------------~~-~~~~~~~~~~G~~l~G~~~~~P~~~~~--ipi~~~~~V~~~~GTG~V~~~ 325 (967)
T 1wz2_A 276 ---------------------------QD-REIEVIEEFKGEKLIGKYVRNPVSGDE--VIILPAEFVDPDNATGVVMSV 325 (967)
T ss_dssp ---------------------------SS-CEEEEEEECCSSTTSSCEEECSSSSCE--EEEEECSSCCSSSTTSCEEEC
T ss_pred ---------------------------hc-cCcEEEEEEEchhhcCCEEECCCCCCc--eEEEecccccCCCCcccEEee
Confidence 00 013455677899999999999998865 999999999999999999999
Q ss_pred CCCChhHHHH----------HHHcCCC--------eecccCC--------------------------------------
Q psy17125 558 PAHGQDDFLL----------ALAEKIP--------VLNLITN-------------------------------------- 581 (1281)
Q Consensus 558 PaH~~~Dy~~----------~~~~~lp--------i~~vid~-------------------------------------- 581 (1281)
||||++||++ +++|||| ++++|+.
T Consensus 326 Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~ 405 (967)
T 1wz2_A 326 PAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEY 405 (967)
T ss_dssp TTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHH
T ss_pred cCCCHHHHHHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccc
Confidence 9999999974 6788977 6777632
Q ss_pred -CCccCCCCCCCCCCceeccccchhHHhhhccccccccccccc-cCcccCCCCceEEc-cccccccChh--hHHHHHHHh
Q psy17125 582 -QGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHS-YPYDWRTKKPVILK-ASQQWFIDTE--RIKPEALAC 656 (1281)
Q Consensus 582 -~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~-~p~~~Rsg~~v~~~-~~~qWf~~~~--~~~~~~~e~ 656 (1281)
+|+|+ + ++|.|+.++ +|++.|++.|++..+....+.++ +|+|||||+||+++ +++|||++++ .+++.++++
T Consensus 406 ~~G~~~--~-g~~~G~~v~-ea~~~i~~~L~~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~ 481 (967)
T 1wz2_A 406 HKGIFK--V-PPYEGKPVQ-EVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKA 481 (967)
T ss_dssp HSCBCC--S-SSSCSSBHH-HHTTTTHHHHHHHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHH
T ss_pred cCceEe--c-cCcCCcCHH-HHHHHHHHHHHhCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHh
Confidence 56665 3 469999996 78999999999843333345555 79999999999999 6999999998 599999999
Q ss_pred hhcccccchhHHHHHHHHHHcCCCcccccccCCCcccee---Eec----CCeEEechhhHHHHHhhhhhcCCCCccCcCc
Q psy17125 657 LEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPV---FYD----GDTIIVNEANIKHFCTLIDEHGPDFWWSLSV 729 (1281)
Q Consensus 657 ~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~---~~~----~~~i~v~~~~~~~i~~~~~~~g~d~~~~~~~ 729 (1281)
+++++++|++.++++.+||++++||||||||+||+|||+ |.+ ++++||+.+++.+....+.+.+ +.++
T Consensus 482 ~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~~~~-----g~~~ 556 (967)
T 1wz2_A 482 LERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEG-----KLDP 556 (967)
T ss_dssp HTTSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHHHTT-----CCCG
T ss_pred hhccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHHHHHhc-----CCCh
Confidence 999999999999999999999999999999999999995 333 4678998888777655332211 1223
Q ss_pred cccccccccccc---cccccccccccccCCcchhhhc------cC-CCccceeeccceeeehhhHHHHHHHHhcCCCCC-
Q psy17125 730 EQLLNTSDVNSN---VTKSNDILDIWFDSGISWSHVL------KD-KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPF- 798 (1281)
Q Consensus 730 ~~l~~~~~~~~~---~~~~~dvlD~WFdS~l~w~~~l------~~-~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf- 798 (1281)
+++++..+.... +.. .+..++|++||++|..+. .. ||+|+|++|+||+++|+..+++++.++.+..|+
T Consensus 557 ~~l~~~~~d~~~~~~~~~-g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~p 635 (967)
T 1wz2_A 557 EKLTPEFFDYIFLEEFSE-DKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWP 635 (967)
T ss_dssp GGCCHHHHHHTTTSCCCH-HHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSC
T ss_pred HHcCcccceeeccCcccc-CccccchhhcCCCHHHHhhhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHHHHcCccccc
Confidence 333321110000 001 133455566665543221 11 799999999999999988888888888776554
Q ss_pred ceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCC
Q psy17125 799 RNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDP 878 (1281)
Q Consensus 799 ~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~ 878 (1281)
+.+++||||++ +|+|||||+||+|+|.++++ +||||++||||+++++.++
T Consensus 636 k~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~-----------------------------~yGaDalR~~ll~~~~~~~ 685 (967)
T 1wz2_A 636 KGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIE-----------------------------ENGADVVRLYIMSLAEHDS 685 (967)
T ss_dssp CCEEEECCEEE-SSSCCCTTTCCCCBHHHHHH-----------------------------TTCHHHHHHHHHHHCCTTC
T ss_pred ceEEEeeEEee-CCEEccccccCCCCHHHHHH-----------------------------HhChHHHHHHHHhCCCCCC
Confidence 99999999995 89999999999999999999 9999999999998888899
Q ss_pred ccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy17125 879 TVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVV 958 (1281)
Q Consensus 879 d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~ 958 (1281)
|++|+.+.++++.++++|++|+++++.+.. .+ ........|+|++++++++++++.++|++|+|++|++.++.+++
T Consensus 686 d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~---~~-~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~ 761 (967)
T 1wz2_A 686 DFDWRRKEVGKLRKQIERFYELISQFAEYE---VK-GNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIM 761 (967)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHHHHHHSSC---CC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHhcCC---CC-CcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999886531 11 12245678999999999999999999999999999998876665
Q ss_pred HhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCCCCCcccccccccccccc
Q psy17125 959 NELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYLQYSG 1037 (1281)
Q Consensus 959 ~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~p~~~~ 1037 (1281)
+. +|+|++..|++ .+.+++.+++++++.+++||+|||||+|||+|+.|+.. .+++.+.||.+++
T Consensus 762 ~~-~n~Yi~~~k~~---------~~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~~-----~sv~~~~wP~~~~ 825 (967)
T 1wz2_A 762 ND-LRWYLRRTEGR---------DDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGGE-----GFVSLAKWPEPVE 825 (967)
T ss_dssp HH-HHHHHHHTTTC---------CCHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSCC-----SCGGGSCCCCCCS
T ss_pred HH-HHHHHHhccch---------hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCC-----CceeccCCCCCCc
Confidence 55 68999988742 12356778999999999999999999999999999642 3466778887653
No 5
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=2.6e-118 Score=1136.70 Aligned_cols=700 Identities=19% Similarity=0.310 Sum_probs=526.2
Q ss_pred CchhHH-HHHHHHc----------CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCch
Q psy17125 3 GFSELY-SWQREAL----------NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLP 71 (1281)
Q Consensus 3 ~~~~~~-~~~~~~~----------~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~p 71 (1281)
.|.++. +||+.+. +++++|++++|||||||.|||||+++++++|+++||+||+||+|++++||||||+|
T Consensus 26 ~~~~iE~kw~~~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glp 105 (880)
T 4arc_A 26 RPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLP 105 (880)
T ss_dssp CHHHHHHHHHHHHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTH
T ss_pred ChHHHHHHHHHHHHhcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcH
Confidence 355666 7777653 25789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCc
Q psy17125 72 IELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLK 151 (1281)
Q Consensus 72 ie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~ 151 (1281)
||.+|++++ ++| ++|+.++++.|+++|++||+++||+| +++|+++.|.++++++|.+|+++|+||++.+
T Consensus 106 ie~~a~~~g---~~p-------~~~~~~~i~~~~~~l~~LGis~Dw~~-~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~ 174 (880)
T 4arc_A 106 AEGAAVKNN---TAP-------APWTYDNIAYMKNQLKMLGFGYDWSR-ELATCTPEYYRWEQKFFTELYKKGLVYKKTS 174 (880)
T ss_dssp HHHHHHHTT---SCH-------HHHHHHHHHHHHHHHHHTTCCCCGGG-CEETTSHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHcC---CCH-------HHHHHHHHHHHHHHHHHhCCCcCCCC-CEEcCCHHHHHHHHHHHHHHHHCCCEEEece
Confidence 999999886 777 67899999999999999999999996 9999999999999999999999999999999
Q ss_pred ceeecCCccccccccccccCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEec
Q psy17125 152 PVYWSPSSRTALAESELEYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVK 231 (1281)
Q Consensus 152 ~v~w~p~~~t~lad~ev~~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~ 231 (1281)
+|+|||.|+|+|||+||. +
T Consensus 175 ~v~wcp~~~t~La~~ev~--~----------------------------------------------------------- 193 (880)
T 4arc_A 175 AVNWCPNDQTVLANEQVI--D----------------------------------------------------------- 193 (880)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred eEeecCCcCCEecchhhh--c-----------------------------------------------------------
Confidence 999999999999998874 0
Q ss_pred CceEEeehhhHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHH
Q psy17125 232 GANVIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLA 311 (1281)
Q Consensus 232 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~ 311 (1281)
T Consensus 194 -------------------------------------------------------------------------------- 193 (880)
T 4arc_A 194 -------------------------------------------------------------------------------- 193 (880)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCCcceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccC
Q psy17125 312 LAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTER 391 (1281)
Q Consensus 312 ~~~~l~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~ 391 (1281)
+.|||||.+|+.+++.|||+++++
T Consensus 194 --------------------------------------------------------g~~~~~g~~ve~~~~~~~f~~i~~ 217 (880)
T 4arc_A 194 --------------------------------------------------------GCCWRCDTKVERKEIPQWFIKITA 217 (880)
T ss_dssp ---------------------------------------------------------------------CEEEEEECGGG
T ss_pred --------------------------------------------------------CcCcCCCCccEEEEccceEEeech
Confidence 238999999999999999999999
Q ss_pred chhhh------------hhhhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeE
Q psy17125 392 IKPEA------------LVCKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHAL 459 (1281)
Q Consensus 392 ~~~e~------------~~~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~ 459 (1281)
|++++ .+..||+|||||+. +++|+|++.+ .+..|.
T Consensus 218 y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~------------------------g~~v~f~~~~---------~~~~i~ 264 (880)
T 4arc_A 218 YADELLNDLDKLDHWPDTVKTMQRNWIGRSE------------------------GVEITFNVND---------YDNTLT 264 (880)
T ss_dssp GHHHHHHHGGGCTTSCHHHHHHHHHHHCEEE------------------------EEEEEEEETT---------CSSEEE
T ss_pred hHHHHHHHHhhcccccHHHHHHHHhhhcccc------------------------ceEEEEEecC---------CCceEE
Confidence 88654 35678999999863 2355665542 246799
Q ss_pred EeeccccCCCcccccccCCccccceecccCceEEeehhhHHhHHhhccCCeeE-eccccccccCCcccccCCCccCccee
Q psy17125 460 IWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDV-VCDFPGQYLQDITYIHPINKEQRDLK 538 (1281)
Q Consensus 460 v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~-~~~~~G~~L~g~~~~hPl~~~~~~ip 538 (1281)
|||||||||+|++|+||||+|+|+...+.+... ..+.++++..+...+... ..+++|. +.|.++.||+++++ +|
T Consensus 265 v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~P~~~~~--ip 339 (880)
T 4arc_A 265 VYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPE--LAAFIDECRNTKVAEAEMATMEKKGV-DTGFKAVHPLTGEE--IP 339 (880)
T ss_dssp EEESCGGGGGGCCEEEECTTCHHHHHHGGGCHH--HHHHHTC----------------CEE-EEEEEEECTTTCCE--EE
T ss_pred EEeCCchhhcCCeEEEECCCcHHHHHHhcChHH--HHHHHHHHhccCchhhhhccceeecc-ccCcEEecCCCCCE--eE
Confidence 999999999999999999999998776543211 011111111111111111 1256776 68999999999876 99
Q ss_pred eeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCeecccCCC-C--------ccCCC----CCCCCCCceeccccchh
Q psy17125 539 LLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQ-G--------KYSPD----AGPGLEGLNILGDGKDQ 605 (1281)
Q Consensus 539 Ii~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid~~-G--------~~~~~----~~~~~~G~~v~~~~~~~ 605 (1281)
|+.++||++++|||+||+|||||++||++|++||||++++|+.. | .|+++ ..+.|.|++++ +|++.
T Consensus 340 i~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~-eA~~~ 418 (880)
T 4arc_A 340 VWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHE-AAFNA 418 (880)
T ss_dssp EEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGGTTCCHH-HHHHH
T ss_pred EEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCcccCCCCHH-HHHHH
Confidence 99999999999999999999999999999999999999999642 2 22221 12468898886 78888
Q ss_pred HHhhhccccccccccccccCcccCCCCceEEccccccccChhhHHHHHHHhhhcccccchhHHHHHHHHHHcCCCccccc
Q psy17125 606 VLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISR 685 (1281)
Q Consensus 606 v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISR 685 (1281)
|++.|++..+.... + +| +++||||||
T Consensus 419 ii~~L~~~g~~~~~--------------v------~y----------------------------------rlrDW~iSR 444 (880)
T 4arc_A 419 IADKLTAMGVGERK--------------V------NY----------------------------------RLRDWGVSR 444 (880)
T ss_dssp HHHHHHHTTSEEEE--------------E------EE----------------------------------SCCCEECEE
T ss_pred HHHHHHHcCCccee--------------E------EE----------------------------------Ecccceeee
Confidence 88888764331110 0 00 268999999
Q ss_pred ccCCCccceeEec--CCeEEechhhHHHHHhh---hhhcCCCCccCcCccccccccccccccccccccccccccCCcchh
Q psy17125 686 QRVWGVPIPVFYD--GDTIIVNEANIKHFCTL---IDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWS 760 (1281)
Q Consensus 686 qr~WG~pIP~~~~--~~~i~v~~~~~~~i~~~---~~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~ 760 (1281)
|||||+|||+|+| |+.+.|+.+.++..++. ....|+.. ...+.|....|.+..+.|++|||||||||+ ||
T Consensus 445 QRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl---~~~~~w~~~~cpg~~~~retDtmDtw~dSs--wy 519 (880)
T 4arc_A 445 QRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPI---KADPEWAKTTVNGMPALRETDTFDTFMESS--WY 519 (880)
T ss_dssp SCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHH---HHSTTTTEEESSSSEEEECCCEECTTTGGG--TH
T ss_pred eeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCch---HhCccceeeccCCCcceeCCCcCCCcccCc--HH
Confidence 9999999999999 78888887655432210 00111100 001233334455778899999999999995 65
Q ss_pred hhcc------------C-----CCccceeeccceeeehhhHH-----HHHHH-HhcCCCCCceEEeeceee-------cc
Q psy17125 761 HVLK------------D-----KPAHVYMEGMDQINGWFMSS-----LLTSV-ALKHTAPFRNVFLHGFVV-------DE 810 (1281)
Q Consensus 761 ~~l~------------~-----~p~dl~~~G~Dii~~wf~~~-----l~~~~-~l~~~~Pf~~v~~hG~vl-------d~ 810 (1281)
+++- + +|+|+|++|.||...|+.+. ++..+ .+.+.+||++|++||||+ |.
T Consensus 520 ~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~ 599 (880)
T 4arc_A 520 YARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGE 599 (880)
T ss_dssp HHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECT
T ss_pred HHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEeecceecccc
Confidence 4320 0 79999999999876664332 23332 245689999999999996 77
Q ss_pred CCC------------------------------------cccccCCCccChhhhhcccccCcccccccCccccccccccc
Q psy17125 811 KGA------------------------------------KMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQG 854 (1281)
Q Consensus 811 ~G~------------------------------------KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~ 854 (1281)
+|+ |||||+||+|+|.++++
T Consensus 600 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIe------------------------ 655 (880)
T 4arc_A 600 NGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVE------------------------ 655 (880)
T ss_dssp TSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHH------------------------
T ss_pred CCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHH------------------------
Confidence 887 99999999999999999
Q ss_pred ccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHHHHHHHHHHH
Q psy17125 855 AKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKRLCEFQ 934 (1281)
Q Consensus 855 ~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~il~~l~~~~ 934 (1281)
+||||++|||+++.++.++|++|+.+.+.+++++++|+||++++....... ...........|+|+++++++++
T Consensus 656 -----kYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~-~~~~~~~l~~~D~~ll~~l~~~i 729 (880)
T 4arc_A 656 -----RYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDV-AALNVDALTENQKALRRDVHKTI 729 (880)
T ss_dssp -----HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCC-CCCCSTTCCHHHHHHHHHHHHHH
T ss_pred -----HcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccccCCHHHHHHHHHHHHHH
Confidence 999999999999998889999999999999999999999999987653211 00012245678999999999999
Q ss_pred HHHHHHHh-hccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHH
Q psy17125 935 NTMDTLYG-EFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVY 1013 (1281)
Q Consensus 935 ~~v~~~~e-~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~ 1013 (1281)
++++++|+ +|+|++|++.+++|+ +.++++ .. .. .....++.++++.+++||+|||||+|||+|
T Consensus 730 ~~V~~a~ed~~~fntAi~~l~efv-n~l~k~----------~~-~~----~~~~~~l~~~l~~ll~LLaPf~PhiaEElW 793 (880)
T 4arc_A 730 AKVTDDIGRRQTFNTAIAAIMELM-NKLAKA----------PT-DG----EQDRALMQEALLAVVRMLNPFTPHICFTLW 793 (880)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH-HHHHTS----------CC-SS----HHHHHHHHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHhhhchhHHHHHHHHHH-HHHHhh----------hc-cc----hHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 99999999 899999999999999 776542 01 11 123467899999999999999999999999
Q ss_pred hhCCCCCCCCccccccccccccccc--hhheeeeecccccccccccce
Q psy17125 1014 SHLPSRQGTFSSFCHFKVYLQYSGS--IAKRILYCDSINGEARLSGLH 1059 (1281)
Q Consensus 1014 ~~L~~~~~~~~s~~~~~~~p~~~~~--i~kd~~y~~~vngk~R~s~q~ 1059 (1281)
+.|+.. .+++.+.||.+++. ..+.+.+++|+|||.|..-..
T Consensus 794 ~~Lg~~-----~sv~~~~wP~~d~~~l~~~~~~~~vqvngk~r~~~~v 836 (880)
T 4arc_A 794 QELKGE-----GDIDNAPWPVADEKAMVEDSTLVVVQVNGKVRAKITV 836 (880)
T ss_dssp HHTTCS-----SCGGGSCCCCCCHHHHCCSEEEEEEEETTEEEEEEEE
T ss_pred HHcCCC-----CeEEeCCCCCCCHHHhccCceEEEEEEecceEEEEEc
Confidence 999753 34667889998875 567899999999998876543
No 6
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=8.2e-116 Score=1125.06 Aligned_cols=702 Identities=22% Similarity=0.325 Sum_probs=539.3
Q ss_pred CchhHH-HHHHHHc-----------CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCc
Q psy17125 3 GFSELY-SWQREAL-----------NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGL 70 (1281)
Q Consensus 3 ~~~~~~-~~~~~~~-----------~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~ 70 (1281)
+|.++. +||+.+. +++++|++++|||||||.|||||+++++++|+++||+||+||+|++++||||||+
T Consensus 5 ~~~~iE~kw~~~W~~~~~f~~~~~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Gl 84 (878)
T 2v0c_A 5 NPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGL 84 (878)
T ss_dssp CCTTHHHHHHHHHHHHTTTCCCSCCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSH
T ss_pred CHHHHHHHHHHHHHHcCCcccCcccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccH
Confidence 466666 6776542 2467899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeC
Q psy17125 71 PIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDL 150 (1281)
Q Consensus 71 pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~ 150 (1281)
|||.+|++++ +++ ++|++++++.++++|++||+++||+| +++|+++.|.+.++++|.+|+++|+||++.
T Consensus 85 pie~~a~k~g---~~~-------~~~~~~~~~~~~~~~~~LGi~~Dw~~-~~~T~d~~~~~~v~~~f~~L~~kGliY~~~ 153 (878)
T 2v0c_A 85 PAENAALKFG---VHP-------KDWTYANIRQAKESLRLMGILYDWDR-EVTTCEPEYYRWNQWIFLKMWEKGLAYRAK 153 (878)
T ss_dssp HHHHHHHHTT---CCH-------HHHHHHHHHHHHHHHHHTTCCCCGGG-CCBTTSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcC---CCH-------HHHHHHHHHHHHHHHHHhCCccCcCC-CeecCCHHHHHHHHHHHHHHHHCCCEEEcc
Confidence 9999999886 777 68899999999999999999999996 999999999999999999999999999999
Q ss_pred cceeecCCccccccccccccCCCCcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEe
Q psy17125 151 KPVYWSPSSRTALAESELEYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASV 230 (1281)
Q Consensus 151 ~~v~w~p~~~t~lad~ev~~~~~~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~ 230 (1281)
++|+|||.|+|+|||+||++
T Consensus 154 ~~v~w~p~~~t~La~~ev~~------------------------------------------------------------ 173 (878)
T 2v0c_A 154 GLVNWCPKCQTVLANEQVVE------------------------------------------------------------ 173 (878)
T ss_dssp EEEEEETTTTEEECGGGEET------------------------------------------------------------
T ss_pred eeEEEeCCCCCCcCHHHHhc------------------------------------------------------------
Confidence 99999999999999999851
Q ss_pred cCceEEeehhhHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHH
Q psy17125 231 KGANVIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLL 310 (1281)
Q Consensus 231 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~ 310 (1281)
T Consensus 174 -------------------------------------------------------------------------------- 173 (878)
T 2v0c_A 174 -------------------------------------------------------------------------------- 173 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCCCcceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCccc-CCcchhhcccchhhhcc
Q psy17125 311 ALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWR-TKKPVILKASQQWFIDT 389 (1281)
Q Consensus 311 ~~~~~l~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r-~~~~v~~~~~~~w~~~~ 389 (1281)
+.|+| |+.+|+.+.+.|||+++
T Consensus 174 ---------------------------------------------------------g~~~~~~~~~~~~~~~~~~f~~l 196 (878)
T 2v0c_A 174 ---------------------------------------------------------GRCWRHEDTPVEKRELEQWYLRI 196 (878)
T ss_dssp ---------------------------------------------------------TEESSCTTCBCEEEEEEEEEECG
T ss_pred ---------------------------------------------------------CCCcccCCCceEEEecceeeEec
Confidence 12677 88888889999999999
Q ss_pred cCchhhh-----------hhhhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCccccee
Q psy17125 390 ERIKPEA-----------LVCKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHA 458 (1281)
Q Consensus 390 ~~~~~e~-----------~~~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i 458 (1281)
++|+.++ .+..+|+||||++.. ++|+|++.+ .+..+
T Consensus 197 ~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g------------------------~~v~f~~~~---------~~~~l 243 (878)
T 2v0c_A 197 TAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEG------------------------AEILFPVEG---------KEVRI 243 (878)
T ss_dssp GGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEE------------------------EEEEEEBTT---------SSCEE
T ss_pred chhHHHHHHHhhhcCCCHHHHHHHHHHhccccC------------------------ceEEEEecC---------CCceE
Confidence 8887653 345789999998632 234454432 24679
Q ss_pred EEeeccccCCCcccccccCCccccceecccCceEEeehhhHHhHHhhccCCeeE-eccccccccCCcccccCCCccCcce
Q psy17125 459 LIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDV-VCDFPGQYLQDITYIHPINKEQRDL 537 (1281)
Q Consensus 459 ~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~-~~~~~G~~L~g~~~~hPl~~~~~~i 537 (1281)
+|||||||||||++|+||||+|+|+...+.++.....++.++++..+...+..+ ..+++|. |+|.++.||+++++ +
T Consensus 244 ~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~g~~~~~P~~~~~--i 320 (878)
T 2v0c_A 244 PVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGV-FLGAYALNPATGER--I 320 (878)
T ss_dssp EEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCE-EEEEEEECTTTCCE--E
T ss_pred EEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeE-ecCcEEECCCCCCE--e
Confidence 999999999999999999999999887654443223333344333322211111 4577898 89999999998865 9
Q ss_pred eeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCeecccCCC---------CccCCCC----CCCCCCceeccccch
Q psy17125 538 KLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQ---------GKYSPDA----GPGLEGLNILGDGKD 604 (1281)
Q Consensus 538 pIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid~~---------G~~~~~~----~~~~~G~~v~~~~~~ 604 (1281)
||+.++||++++|||+||+|||||++||++|++||||++++|+.+ |.|+.+. .+.|.|+++. +|++
T Consensus 321 pi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~-eA~~ 399 (878)
T 2v0c_A 321 PIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESE-EGKR 399 (878)
T ss_dssp EEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHH-HHHH
T ss_pred EEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEecCCCCCCcCHH-HHHH
Confidence 999999999999999999999999999999999999999999853 3454321 2468999996 7899
Q ss_pred hHHhhhccccccccccccccCcccCCCCceEEccccccccChhhHHHHHHHhhhcccccchhHHHHHHHHHHcCCCcccc
Q psy17125 605 QVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCIS 684 (1281)
Q Consensus 605 ~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l~~l~DW~IS 684 (1281)
.|++.|++..+.. .++.+ +++|||||
T Consensus 400 ~Ii~~L~~~g~~~--------------~~v~~----------------------------------------rlrDW~IS 425 (878)
T 2v0c_A 400 KVIAWLEEKGLGK--------------GRVTY----------------------------------------RLRDWLIS 425 (878)
T ss_dssp HHHHHHHHHTSEE--------------EEEEE----------------------------------------SCCCEECE
T ss_pred HHHHHHHHCCCCC--------------CceEE----------------------------------------ecccchhh
Confidence 9999998643311 11110 36799999
Q ss_pred cccCCCccceeEec--CCeEEechhhHHHHHh----h--hhhcCCCCccCcCccccccccc--ccccccccccccccccc
Q psy17125 685 RQRVWGVPIPVFYD--GDTIIVNEANIKHFCT----L--IDEHGPDFWWSLSVEQLLNTSD--VNSNVTKSNDILDIWFD 754 (1281)
Q Consensus 685 Rqr~WG~pIP~~~~--~~~i~v~~~~~~~i~~----~--~~~~g~d~~~~~~~~~l~~~~~--~~~~~~~~~dvlD~WFd 754 (1281)
|||+||+|||+|+| |+.+.++.+.++..+. . +.+.|.+. . ...++|.+..| |+..+.|++||||||||
T Consensus 426 RQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~p-l-~~~~~~~~~~cp~cg~~~~retDtmDtwfd 503 (878)
T 2v0c_A 426 RQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSP-L-EAHPEFYETTCPKCGGPAKRDTDTMDTFFD 503 (878)
T ss_dssp ESCSSSEECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCG-G-GGCHHHHEEECTTTCSEEEECCCEECHHHH
T ss_pred cccccCCcccEEEECCCCeEecCHHHccccccchhhhhccccCCCCh-h-hhhHhhcCCcCCCCCCcceecccccccccc
Confidence 99999999999999 5667777654432111 1 11112111 0 11223333233 56789999999999999
Q ss_pred CCcchhhhcc------------C-----CCccceeeccceeeehhhHH-H----HHHHH-hcCCCCCceEEeeceeecc-
Q psy17125 755 SGISWSHVLK------------D-----KPAHVYMEGMDQINGWFMSS-L----LTSVA-LKHTAPFRNVFLHGFVVDE- 810 (1281)
Q Consensus 755 S~l~w~~~l~------------~-----~p~dl~~~G~Dii~~wf~~~-l----~~~~~-l~~~~Pf~~v~~hG~vld~- 810 (1281)
|+ |++++. + +|+|+|++|+||...||... + +..++ +.+++||++|++||||+|.
T Consensus 504 Ss--w~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~ 581 (878)
T 2v0c_A 504 SS--WYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWT 581 (878)
T ss_dssp HT--SHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEE
T ss_pred cc--chhhhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheecceEeccc
Confidence 94 665531 1 79999999999977764432 2 22222 4568999999999999984
Q ss_pred ---------------------------------------------CC-------CcccccCCCccChhhhhcccccCccc
Q psy17125 811 ---------------------------------------------KG-------AKMSKSVGNVISAHDITQGAKKLPAY 838 (1281)
Q Consensus 811 ---------------------------------------------~G-------~KMSKS~GNvv~p~dli~g~~~~~~m 838 (1281)
+| +|||||+||+|+|.++++
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~-------- 653 (878)
T 2v0c_A 582 DFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVK-------- 653 (878)
T ss_dssp EEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHH--------
T ss_pred eeccccccccceeccccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHH--------
Confidence 89 999999999999999999
Q ss_pred ccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhc-CCCCCCCC
Q psy17125 839 EKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLH-NHSESTGS 917 (1281)
Q Consensus 839 sks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~-~~~~~~~~ 917 (1281)
+||||++|||+++.++.++|++|+.+.+.++.++++|+||++++...... ........
T Consensus 654 ---------------------~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~~~~~~~~~ 712 (878)
T 2v0c_A 654 ---------------------EQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAE 712 (878)
T ss_dssp ---------------------HSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCGG
T ss_pred ---------------------HcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcc
Confidence 99999999999998888999999999999999999999999987765431 10000122
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHH
Q psy17125 918 ISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVL 997 (1281)
Q Consensus 918 ~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l 997 (1281)
.+...|+|+++++++++++++++|++|+|++|++.+++|+ +.+++ |.+. +.. ..+++++++.+
T Consensus 713 ~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~-~~l~k-~~~~-------~~~--------~~~l~~~l~~l 775 (878)
T 2v0c_A 713 ALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFL-NALYE-YRKD-------RPV--------TPVYRTAIRYY 775 (878)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHH-HHHH-------CCS--------CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHHhh-hccc-------chh--------HHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999 67755 4331 000 13688999999
Q ss_pred HHHhccccCccHHHHHhhCCCCCCCCccccccccccccccc--hhheeeeecccccccccccce
Q psy17125 998 LRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYLQYSGS--IAKRILYCDSINGEARLSGLH 1059 (1281)
Q Consensus 998 ~~lLaP~~P~laeel~~~L~~~~~~~~s~~~~~~~p~~~~~--i~kd~~y~~~vngk~R~s~q~ 1059 (1281)
++||+|||||+|||+|+.|+ ..+++.+.||.+++. ..+.+.+++|+||+.|..-..
T Consensus 776 ~~LLaPf~P~~aEElw~~Lg------~~sv~~~~wP~~d~~~l~~~~~~~~vqvngkvR~~i~v 833 (878)
T 2v0c_A 776 LQMLFPFAPHLAEELWHWFW------PDSLFEAGWPELDEKALEKDVVEVAVQVNGAVAGTIHI 833 (878)
T ss_dssp HHHHTTTSHHHHHHHHHHHC------SSCGGGSCCCCCCGGGGC--------------------
T ss_pred HHHHcccchHHHHHHHHHcC------CCceeecCCCCCCHHHHHHHHHHHHHhhHHHHHHHccc
Confidence 99999999999999999997 234667889988765 356789999999999876543
No 7
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.9e-112 Score=1093.51 Aligned_cols=679 Identities=22% Similarity=0.316 Sum_probs=547.0
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcc------------cCC
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKD------------KLL 84 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~------------~~~ 84 (1281)
++++|+|++|||||||+|||||++|++++|+++||+||+||+|++++||||||+||+..|.+... .++
T Consensus 32 ~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~ 111 (810)
T 1wkb_A 32 KEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKV 111 (810)
T ss_dssp GGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCC
T ss_pred CCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCC
Confidence 36889999999999999999999999999999999999999999999999999999988765320 024
Q ss_pred CHHHHH--HHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCC--HHHHHHHHHHHHHHHhCCcEEeeCcceeecCCcc
Q psy17125 85 SPLDIR--KKAKNFALETINTQKAEFESWGVLADWEHNCYHTFD--KEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSR 160 (1281)
Q Consensus 85 ~~~e~~--~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~--~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~ 160 (1281)
+..++. ..|++|++++.+.|+++|++||+++||+| +|+|+| +.|.+.++++|.+|+++|+||++.++|+|||.|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~-~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~ 190 (810)
T 1wkb_A 112 PEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSR-EFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVG 190 (810)
T ss_dssp CHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGG-CCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCC-ceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcC
Confidence 444443 25899999999999999999999999995 999999 9999999999999999999999999999999999
Q ss_pred ccccccccccCCC-CcCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecC----ceE
Q psy17125 161 TALAESELEYKPD-HVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG----ANV 235 (1281)
Q Consensus 161 t~lad~ev~~~~~-~~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~----~~~ 235 (1281)
|+|||+||++.+. ..+..++|+|++.+. ..+.+++||||||||||||+||+|||+.+|+++++.| +.+
T Consensus 191 t~La~~ev~~~~~~~~~~~~~v~f~~~~~-------~~~~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~ 263 (810)
T 1wkb_A 191 TPLGDHDLMEGEDVPILDYIIIKFELREN-------GEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETW 263 (810)
T ss_dssp EECCTTCCSBCSSCCEEEEEEEEEECCSS-------CSCCEEEEEESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEE
T ss_pred CCccHHHHhcCCCCccceeEEEEEEccCC-------CCceEEEEEcCCchHhhhhhEEEECCCCcEEEEEecCCCcceee
Confidence 9999999987652 334457899998541 2347999999999999999999999999999998766 778
Q ss_pred EeehhhHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcC
Q psy17125 236 IVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEK 315 (1281)
Q Consensus 236 i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~ 315 (1281)
|+++++++++.
T Consensus 264 i~~~~~~~~~~--------------------------------------------------------------------- 274 (810)
T 1wkb_A 264 IVSKEAAYKLS--------------------------------------------------------------------- 274 (810)
T ss_dssp EEEHHHHHHHT---------------------------------------------------------------------
T ss_pred eeHHHHHHHHH---------------------------------------------------------------------
Confidence 88766554210
Q ss_pred CCcceeccCCCCcCCCCCCCCCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhh
Q psy17125 316 IPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPE 395 (1281)
Q Consensus 316 l~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e 395 (1281)
T Consensus 275 -------------------------------------------------------------------------------- 274 (810)
T 1wkb_A 275 -------------------------------------------------------------------------------- 274 (810)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhcccccccccccCCcccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccc
Q psy17125 396 ALVCKTVGNILGRVGITHDRPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIA 475 (1281)
Q Consensus 396 ~~~~~~~~~~ig~~~~~~~~~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~ 475 (1281)
T Consensus 275 -------------------------------------------------------------------------------- 274 (810)
T 1wkb_A 275 -------------------------------------------------------------------------------- 274 (810)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccceecccCceEEeehhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEe
Q psy17125 476 FNPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVH 555 (1281)
Q Consensus 476 v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~ 555 (1281)
.+. ...+++++++|.+|+|+++.||+++.+ +||++++||++++|||+||
T Consensus 275 ----------------------------~~~-~~~~~~~~~~G~~l~g~~~~~P~~~~~--ipi~~~~~V~~~~GTG~V~ 323 (810)
T 1wkb_A 275 ----------------------------FQD-REIEVIEEFKGEKLIGKYVRNPVSGDE--VIILPAEFVDPDNATGVVM 323 (810)
T ss_dssp ----------------------------TSS-CEEEEEEECTTTTTTTCEEECSSSCCE--EEEEECTTSCTTSTTSCEE
T ss_pred ----------------------------hhh-cceEEEEEEEchhhcCCEEECCCCCCe--eEEEecCcccCCCCceeEE
Confidence 000 012345677899999999999999865 9999999999999999999
Q ss_pred cCCCCChhHHHH----------HHHcCCC--------eecccCC------------------------------------
Q psy17125 556 CAPAHGQDDFLL----------ALAEKIP--------VLNLITN------------------------------------ 581 (1281)
Q Consensus 556 ~~PaH~~~Dy~~----------~~~~~lp--------i~~vid~------------------------------------ 581 (1281)
+|||||++||++ |++|||| ++++|+.
T Consensus 324 ~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~ 403 (810)
T 1wkb_A 324 SVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKA 403 (810)
T ss_dssp ECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhc
Confidence 999999999986 5788987 7887743
Q ss_pred ---CCccCCCCCCCCCCceeccccchhHHhhhccccccccccccc-cCcccCCCCceEEc-cccccccChhh--HHHHHH
Q psy17125 582 ---QGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHS-YPYDWRTKKPVILK-ASQQWFIDTER--IKPEAL 654 (1281)
Q Consensus 582 ---~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~-~p~~~Rsg~~v~~~-~~~qWf~~~~~--~~~~~~ 654 (1281)
+|+++ + +.|.|+.+. +|++.|++.|++..+....+.++ +|+|||||+|++++ +++|||+++++ +++.++
T Consensus 404 ~~~~G~~~--~-g~~~G~~v~-~a~~~i~~~L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l 479 (810)
T 1wkb_A 404 EYHKGIFK--V-PPYEGKPVQ-EVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKAR 479 (810)
T ss_dssp HHHSCEEC--S-GGGTTEEHH-HHHHHHHHHHHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHH
T ss_pred cccCceEe--c-cCcCCeEHH-HhHHHHHHHHHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHHHHHH
Confidence 45555 3 469999986 78999999999843222233333 69999999999999 79999999985 999999
Q ss_pred HhhhcccccchhHHHHHHHHHHcCCCcccccccCCCcccee---Eec----CCeEEechhhHHHHHhhhhhcCCCCccCc
Q psy17125 655 ACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPV---FYD----GDTIIVNEANIKHFCTLIDEHGPDFWWSL 727 (1281)
Q Consensus 655 e~~~~~~~~P~~~r~~~~~~l~~l~DW~ISRqr~WG~pIP~---~~~----~~~i~v~~~~~~~i~~~~~~~g~d~~~~~ 727 (1281)
++++++.++|++.++++.+||++++||||||||+||+|||+ |.+ ++++||+.+.+.+....+.+.+ +.
T Consensus 480 ~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~~~-----~~ 554 (810)
T 1wkb_A 480 KALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEG-----KL 554 (810)
T ss_dssp HHHHTSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHHTT-----CC
T ss_pred hhhcccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHHhHhhc-----CC
Confidence 99999999999999999999999999999999999999994 333 5678998887766554322211 12
Q ss_pred Ccccccccccccc---ccccccccccccccCCcchhhhc------cC-CCccceeeccceeeehhhHHHHHHHHhcCCCC
Q psy17125 728 SVEQLLNTSDVNS---NVTKSNDILDIWFDSGISWSHVL------KD-KPAHVYMEGMDQINGWFMSSLLTSVALKHTAP 797 (1281)
Q Consensus 728 ~~~~l~~~~~~~~---~~~~~~dvlD~WFdS~l~w~~~l------~~-~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~P 797 (1281)
+++++.+..+... .+.. .+..++|++||++|..+. .. ||+|+|++|+||+++|...+++.+.++.+..|
T Consensus 555 ~~~~l~~~~~d~~~~~~~~~-g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~ 633 (810)
T 1wkb_A 555 DPEKLTPEFFDYIFLEEFSE-DKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEH 633 (810)
T ss_dssp CGGGCCHHHHHHHHHSCCCH-HHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGG
T ss_pred CHHHcCccceeeeecccccc-CccccchhhhCCCHHHHHhhHHHHHhhCCceEEeecccccccHHHHHHHHHHHHcCccc
Confidence 2233322111000 0001 134556667776543221 11 79999999999999998888888888776544
Q ss_pred C-ceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCC
Q psy17125 798 F-RNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASK 876 (1281)
Q Consensus 798 f-~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~ 876 (1281)
+ +.+++||||++ +|+|||||+||+|+|.++++ +||+|++||||+++++.
T Consensus 634 ~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~-----------------------------~yGaDalR~~ll~~~~~ 683 (810)
T 1wkb_A 634 WPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIE-----------------------------ENGADVVRLYIMSLAEH 683 (810)
T ss_dssp SCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHH-----------------------------HHCHHHHHHHHHHHCCT
T ss_pred cccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHH-----------------------------HcChHHHHHHHHhcCCC
Confidence 3 89999999995 89999999999999999999 99999999999988888
Q ss_pred CCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q psy17125 877 DPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNF 956 (1281)
Q Consensus 877 ~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f 956 (1281)
++|++|+.+.++++.++++|++|+++++.+.. .+ ........|+|++++++++++++.++|++|+|++|++.++.+
T Consensus 684 ~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~---~~-~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~ 759 (810)
T 1wkb_A 684 DSDFDWRRKEVGKLRKQIERFYELISQFAEYE---VK-GNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYS 759 (810)
T ss_dssp TCCEEECHHHHHHHHHHHHHHHHHHHHHHTCC---CC-SCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHhcc---Cc-ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999886531 11 122356789999999999999999999999999999977645
Q ss_pred HHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCC
Q psy17125 957 VVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLP 1017 (1281)
Q Consensus 957 ~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~ 1017 (1281)
+++. +|+|++..|++ + +.+.+.+++++++.+++||+|||||+|||+|++|+
T Consensus 760 l~~~-~n~yi~~~k~~------~---~~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 760 IMND-LRWYLRRTEGR------D---DEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp HHHH-HHHHHHHTTTC------C---CHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred HHHH-HHHHHHHhcCc------c---hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 5455 58899988752 1 11226789999999999999999999999999884
No 8
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=4.1e-78 Score=749.83 Aligned_cols=485 Identities=17% Similarity=0.208 Sum_probs=399.6
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHH
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKN 95 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~ 95 (1281)
+.+++|+|+.|||||||.||||||++++++|+++||+||+||+|+|++||||||+||+.+|++++ ++| ++
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g---~~~-------~e 75 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQ---VSP-------YD 75 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTT---SCH-------HH
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcC---CCH-------HH
Confidence 45688999999999999999999999999999999999999999999999999999999999986 888 56
Q ss_pred HHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCCCCc
Q psy17125 96 FALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHV 175 (1281)
Q Consensus 96 ~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~~~~ 175 (1281)
||+++++.+++++++|||++|| +++|+++.|.+.++++|.+|+++|+||++.++|+|||+|+|+|+|.||+...
T Consensus 76 ~~~~~~~~~~~~~~~lgi~~D~---~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~--- 149 (542)
T 3u1f_A 76 FTTAVAGEFKKCFEQMDYSIDY---FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGV--- 149 (542)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSE---EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEE---
T ss_pred HHHHHHHHHHHHHHHhCCccCc---CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccc---
Confidence 7999999999999999999995 5689999999999999999999999999999999999999999988764100
Q ss_pred CccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCceE
Q psy17125 176 SKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIEV 255 (1281)
Q Consensus 176 ~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 255 (1281)
T Consensus 150 -------------------------------------------------------------------------------- 149 (542)
T 3u1f_A 150 -------------------------------------------------------------------------------- 149 (542)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCCCC
Q psy17125 256 VCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPG 335 (1281)
Q Consensus 256 ~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~~~ 335 (1281)
+
T Consensus 150 --------------------------------------------------------------------------~----- 150 (542)
T 3u1f_A 150 --------------------------------------------------------------------------D----- 150 (542)
T ss_dssp --------------------------------------------------------------------------C-----
T ss_pred --------------------------------------------------------------------------c-----
Confidence 0
Q ss_pred CCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccccCC
Q psy17125 336 LEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHDR 415 (1281)
Q Consensus 336 ~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~~ 415 (1281)
T Consensus 151 -------------------------------------------------------------------------------- 150 (542)
T 3u1f_A 151 -------------------------------------------------------------------------------- 150 (542)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEee
Q psy17125 416 PGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVA 495 (1281)
Q Consensus 416 ~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a 495 (1281)
T Consensus 151 -------------------------------------------------------------------------------- 150 (542)
T 3u1f_A 151 -------------------------------------------------------------------------------- 150 (542)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCe
Q psy17125 496 KCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPV 575 (1281)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi 575 (1281)
T Consensus 151 -------------------------------------------------------------------------------- 150 (542)
T 3u1f_A 151 -------------------------------------------------------------------------------- 150 (542)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccCCCCccCCCCCCCCCCceeccccchhHHhhhccccccccccccccCcccCCCCceEEccccccccChhhHHHHHHH
Q psy17125 576 LNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALA 655 (1281)
Q Consensus 576 ~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e 655 (1281)
..| +.+++|+|||+|++++.++|||++++++++++++
T Consensus 151 -----~~g--------------------------------------~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~ 187 (542)
T 3u1f_A 151 -----KDG--------------------------------------NPCKVSLESGHVVTWVSEENYMFRLSAFRERLLE 187 (542)
T ss_dssp -----TTS--------------------------------------CEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHH
T ss_pred -----ccC--------------------------------------ccccccCCCCCcceeeccccceecchhHHHHHHH
Confidence 000 0125688999999999999999999999999999
Q ss_pred hhhc--ccccchhHHHHHHHHHHc-CCCcccccccC----CCccceeEecCCeEEechhhHHHHHhhhhhcCCCCccCcC
Q psy17125 656 CLEE--VNFVPESAKKTLRDQIAQ-RPYWCISRQRV----WGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLS 728 (1281)
Q Consensus 656 ~~~~--~~~~P~~~r~~~~~~l~~-l~DW~ISRqr~----WG~pIP~~~~~~~i~v~~~~~~~i~~~~~~~g~d~~~~~~ 728 (1281)
++++ ..+.|+..++...+|+++ ++|||||||++ ||+|||. ..++.+|+|.+........... +
T Consensus 188 ~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~-~~~~~~~vw~da~~~~~~~~~~-----~---- 257 (542)
T 3u1f_A 188 WYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPG-NPDHXVYVWLDALTNYLTGSRL-----R---- 257 (542)
T ss_dssp HHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETT-EEEEEECHHHHHHTHHHHHHTE-----E----
T ss_pred HHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCC-CcCeeeeeeeccchhhhhhhhc-----c----
Confidence 9975 468899999999999987 89999999997 9999995 2356778887644322211100 0
Q ss_pred ccccccccccccccccccccccccccCCcchhhhccCCCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceee
Q psy17125 729 VEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVV 808 (1281)
Q Consensus 729 ~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~~~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vl 808 (1281)
......+.+..|.|.+.. .+|.|+|++|+||++||-.......++. +..|++.+++||++.
T Consensus 258 ----------~~~~g~~~~~~d~~~~~~--------~~p~d~~~~G~D~~~fh~~~~~a~l~~~-g~~~~~~v~~hg~l~ 318 (542)
T 3u1f_A 258 ----------VDESGKEVSLVDDFNELE--------RFPADVHVIGKDILKFHAIYWPAFLLSA-GLPLPKKIVAHGWWT 318 (542)
T ss_dssp ----------ECTTSCEEEECSSGGGTT--------CCSCSEEEEEGGGHHHHHTHHHHHHHHH-TCCCCSCEEEECCCE
T ss_pred ----------ccccCCcccccchhhhhc--------CCcceEEEecccccccccchhHHHHHhh-cccccceecccccee
Confidence 000111222334444321 1799999999999998733222222222 445679999999976
Q ss_pred ccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhc
Q psy17125 809 DEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILN 888 (1281)
Q Consensus 809 d~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~ 888 (1281)
.+|+|||||+||+|+|.++++ +||+|+|||||++.++.++|++|+.+.+.
T Consensus 319 -~~G~KMSKSlGNvi~p~~~i~-----------------------------~ygaD~lR~~l~~~~~~~~d~~fs~~~~~ 368 (542)
T 3u1f_A 319 -KDRKKISKSLGNVFDPVEKAE-----------------------------EFGYDALKYFLLRESGFSDDGDYSDKNMI 368 (542)
T ss_dssp -ETTBCCBTTTTBCCCHHHHHH-----------------------------HHCHHHHHHHHHHHCCTTSCCEECHHHHH
T ss_pred -cCCceeccccCCCCChhHHHh-----------------------------hcCchHHHHHHHhcCcccccccccHHHHH
Confidence 799999999999999999999 99999999999999988999999999987
Q ss_pred cch--HHHHHHHHHHHHHHHhhcCCCCCC--CCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhH
Q psy17125 889 SSQ--DDVQKIRSSLRYLLGVLHNHSEST--GSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAF 964 (1281)
Q Consensus 889 ~~~--~~~~kl~n~~r~~~~~l~~~~~~~--~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~ 964 (1281)
... .++++++|+++++.....++.... .......|+|++++++++++++.++|++|+|++|++.+++|+ +++|+
T Consensus 369 ~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~--~~~n~ 446 (542)
T 3u1f_A 369 ARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVL--RAINA 446 (542)
T ss_dssp HHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhcccCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 643 389999999999987655443221 335678899999999999999999999999999999999998 67899
Q ss_pred HHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCC
Q psy17125 965 YFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQ 1020 (1281)
Q Consensus 965 Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~ 1020 (1281)
|++..+||...++ +..++.+++++++++++.+++||+|||||+||++|++|+...
T Consensus 447 Y~~~~~pw~l~k~-d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~~ 501 (542)
T 3u1f_A 447 YVTDMAPWKLVKT-DPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPE 501 (542)
T ss_dssp HHHHHCHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCG
T ss_pred HHHhcCchhhhcC-CHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCCCC
Confidence 9999999754432 345556778889999999999999999999999999998654
No 9
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=1.2e-76 Score=751.07 Aligned_cols=330 Identities=14% Similarity=0.193 Sum_probs=263.9
Q ss_pred cCcccCCCCceEEccccccccChhhHHHHHHHhhhcccccchhHHHHHHHHH-HcCCCcccccccCCCccceeEe---cC
Q psy17125 624 YPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQI-AQRPYWCISRQRVWGVPIPVFY---DG 699 (1281)
Q Consensus 624 ~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~~~~P~~~r~~~~~~l-~~l~DW~ISRqr~WG~pIP~~~---~~ 699 (1281)
.|+|+|||++++++.++||||+++++++++++++++.. +|++.++++.+|| ++++|||||||++||+|||+++ .+
T Consensus 170 ~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~-wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~g~~~ 248 (722)
T 1rqg_A 170 NPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQP-WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKG 248 (722)
T ss_dssp SCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSC-CCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTT
T ss_pred CCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHCCCcccceeccccCccccCccccCCCC
Confidence 58999999999999999999999999999999999877 6999999999999 6799999999999999999864 36
Q ss_pred CeEEechhh-HHHHHhhhhhcCCCCccCcCccccccccccccccccccccccccc---cCCcchhhhccCCCccceeecc
Q psy17125 700 DTIIVNEAN-IKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWF---DSGISWSHVLKDKPAHVYMEGM 775 (1281)
Q Consensus 700 ~~i~v~~~~-~~~i~~~~~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WF---dS~l~w~~~l~~~p~dl~~~G~ 775 (1281)
+++|||.+. +.++... .. +.. ...+.+.++.|| +|+. .+++++|+
T Consensus 249 ~~iyvW~da~i~y~~~~-~~-------------~~~-------~~g~~~~~~~~w~~pd~~~----------~~~h~~Gk 297 (722)
T 1rqg_A 249 KVLYVWFEAPIGYISIT-IE-------------HFK-------RIGKPNEWKKYWLNIDGQT----------RVIHFIGK 297 (722)
T ss_dssp CEECHHHHGGGHHHHHH-HH-------------HHH-------HTTCTTTTHHHHBCSSCCE----------EEEEEEEG
T ss_pred CEEEEEeccccchhhhH-HH-------------HHh-------hcCCchHHHhccCCCCCCC----------eeEEEccc
Confidence 788998774 3333221 10 000 000123455443 3321 24799999
Q ss_pred ceeeehh--hHHHHHHHHh--------cCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcc
Q psy17125 776 DQINGWF--MSSLLTSVAL--------KHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNV 845 (1281)
Q Consensus 776 Dii~~wf--~~~l~~~~~l--------~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~ 845 (1281)
|+++||- +..++++... ...+| +++++||||++ +|+|||||+||+|+|.++++
T Consensus 298 Dii~fH~~~wpA~l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~-~G~KMSKS~GNvV~p~d~i~--------------- 360 (722)
T 1rqg_A 298 DNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLP-YDIPANEYLTL-EGKKFSTSRNWAIWVHEFLD--------------- 360 (722)
T ss_dssp GGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCC-SBCCEECCEEE-TTEECBTTTTBSCBHHHHTT---------------
T ss_pred cccccchhhhHHHHhccCCCcccccccCCCCC-CEEEEeeeEEe-CCeeeeeeCCCcCCHHHHHH---------------
Confidence 9999883 3333333221 12567 99999999996 99999999999999999999
Q ss_pred cccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccch--HHHHHHHHHHHHHHHhhcCCCCCC---CCcCc
Q psy17125 846 ISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQ--DDVQKIRSSLRYLLGVLHNHSEST---GSISR 920 (1281)
Q Consensus 846 ~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~--~~~~kl~n~~r~~~~~l~~~~~~~---~~~~~ 920 (1281)
+||+|++||||++.++..+|++|+.+.+.... +++++++|+++++...+..+..+. .....
T Consensus 361 --------------~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~~~~ 426 (722)
T 1rqg_A 361 --------------VFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVPERGELD 426 (722)
T ss_dssp --------------TSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCCCCCCCC
T ss_pred --------------hcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCC
Confidence 99999999999999888999999999887644 378889998877766543221111 12346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHH
Q psy17125 921 YVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRT 1000 (1281)
Q Consensus 921 ~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~l 1000 (1281)
..|+|++++++++++++.++|++|+|++|++.+++|+ +++|+|++..+||.+.++ +..+..+++++++++++.+++|
T Consensus 427 ~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~--~~~n~Yi~~~kpw~~~k~-~~~~~~~vl~~l~~~l~~l~~l 503 (722)
T 1rqg_A 427 ELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA--SFGNRYFDHKQPWKTAKE-DKVRTGTTVNISLQIVKALGIL 503 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHTTCHHHHTTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCchhhcCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999 689999999999987653 3344456788899999999999
Q ss_pred hccccCccHHHHHhhCCCC
Q psy17125 1001 VAPIMPHLAEEVYSHLPSR 1019 (1281)
Q Consensus 1001 LaP~~P~laeel~~~L~~~ 1019 (1281)
|+|||||+||++|++|+..
T Consensus 504 L~P~~P~~aeei~~~L~~~ 522 (722)
T 1rqg_A 504 LEPFLPDASEKIWHLLNLD 522 (722)
T ss_dssp HTTTCHHHHHHHHHHTTCC
T ss_pred hhccccHHHHHHHHHcCCC
Confidence 9999999999999999754
No 10
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=4.8e-73 Score=704.57 Aligned_cols=495 Identities=19% Similarity=0.286 Sum_probs=393.1
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHH
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKN 95 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~ 95 (1281)
.++++|+|++|||||||+|||||+|+++++|+++||+||+||+|.+++|||+||+||+.+|++.+ +++ ++
T Consensus 15 ~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g---~~~-------~~ 84 (560)
T 3h99_A 15 QVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLG---ITP-------EQ 84 (560)
T ss_dssp --CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHT---SCH-------HH
T ss_pred CCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhC---CCH-------HH
Confidence 57899999999999999999999999999999999999999999999999999999999999986 788 56
Q ss_pred HHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCCCCc
Q psy17125 96 FALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHV 175 (1281)
Q Consensus 96 ~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~~~~ 175 (1281)
+++++.+.++++|++|||++| .+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+|+|++.+|+..+
T Consensus 85 ~~~~~~~~~~~~~~~lgi~~d---~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~c--- 158 (560)
T 3h99_A 85 MIGEMSQEHQTDFAGFNISYD---NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTC--- 158 (560)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS---EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEC---
T ss_pred HHHHHHHHHHHHHHHcCCCCC---CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCC---
Confidence 688899999999999999877 68999999999999999999999999999999999999999999998875221
Q ss_pred CccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCceE
Q psy17125 176 SKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIEV 255 (1281)
Q Consensus 176 ~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 255 (1281)
T Consensus 159 -------------------------------------------------------------------------------- 158 (560)
T 3h99_A 159 -------------------------------------------------------------------------------- 158 (560)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCCCC
Q psy17125 256 VCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPG 335 (1281)
Q Consensus 256 ~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~~~ 335 (1281)
|.|+.. +..|..|+.||.
T Consensus 159 ---------------------------------------------p~c~~~----------------~~~gd~ce~cg~- 176 (560)
T 3h99_A 159 ---------------------------------------------PKCKSP----------------DQYGDNCEVCGA- 176 (560)
T ss_dssp ---------------------------------------------TTTCCS----------------SEETTBCTTTCC-
T ss_pred ---------------------------------------------CCCCCc----------------ccccchhhhccc-
Confidence 111100 001222222210
Q ss_pred CCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccccCC
Q psy17125 336 LEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHDR 415 (1281)
Q Consensus 336 ~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~~ 415 (1281)
T Consensus 177 -------------------------------------------------------------------------------- 176 (560)
T 3h99_A 177 -------------------------------------------------------------------------------- 176 (560)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEee
Q psy17125 416 PGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVA 495 (1281)
Q Consensus 416 ~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a 495 (1281)
T Consensus 177 -------------------------------------------------------------------------------- 176 (560)
T 3h99_A 177 -------------------------------------------------------------------------------- 176 (560)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCe
Q psy17125 496 KCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPV 575 (1281)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi 575 (1281)
T Consensus 177 -------------------------------------------------------------------------------- 176 (560)
T 3h99_A 177 -------------------------------------------------------------------------------- 176 (560)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccCCCCccCCCCCCCCCCceeccccchhHHhhhccccccccccccccCcccCCCCceEEccccccccChhhHHHHHHH
Q psy17125 576 LNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALA 655 (1281)
Q Consensus 576 ~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e 655 (1281)
.+.+. +...|.|+|||++++++.++||||+++++++.+.+
T Consensus 177 ----------------~~~~~------------------------~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~ 216 (560)
T 3h99_A 177 ----------------TYSPT------------------------ELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQA 216 (560)
T ss_dssp ----------------BCCGG------------------------GCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHH
T ss_pred ----------------cCChh------------------------hhcCCccccCCCCceEEecceEEEEHHHHHHHHHH
Confidence 00000 01137899999999999999999999999999999
Q ss_pred hhhcccccchhHHHHHHHHHH-cCCCccccccc-CCCccceeEecCCeEEechhhHHHHHhhhhhcCCCCccCcCccccc
Q psy17125 656 CLEEVNFVPESAKKTLRDQIA-QRPYWCISRQR-VWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLL 733 (1281)
Q Consensus 656 ~~~~~~~~P~~~r~~~~~~l~-~l~DW~ISRqr-~WG~pIP~~~~~~~i~v~~~~~~~i~~~~~~~g~d~~~~~~~~~l~ 733 (1281)
++++.. +|+..++.+.+||+ +++|||||||+ +||+|||. .+++++|||.+............ .
T Consensus 217 ~~~~~~-~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~-~~~~viyvW~da~~~y~s~~~~~-------------~ 281 (560)
T 3h99_A 217 WTRSGA-LQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPN-APGKYFYVWLDAPIGLMGSFKNL-------------C 281 (560)
T ss_dssp HHHTSC-SCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTT-CTTEEECHHHHHHHHHHHHHHHH-------------H
T ss_pred HHHhCC-CCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCC-CCCceEEeCcccchhHHHHHHHH-------------h
Confidence 998854 57778999999998 69999999999 89999995 23556777765432222111000 0
Q ss_pred cccccccccccccccccccccCCcchhhhccCCCcc-----ceeeccceeeeh--hhHHHHHHHHhcCCCCCceEEeece
Q psy17125 734 NTSDVNSNVTKSNDILDIWFDSGISWSHVLKDKPAH-----VYMEGMDQINGW--FMSSLLTSVALKHTAPFRNVFLHGF 806 (1281)
Q Consensus 734 ~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~~~p~d-----l~~~G~Dii~~w--f~~~l~~~~~l~~~~Pf~~v~~hG~ 806 (1281)
. . ..+.+.++.| ||.| +++.|+||++|| |+..++++++ ..+| ++|++||+
T Consensus 282 ~------~-~~~~~~~~~~-------------wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g--~~~p-~~v~~hg~ 338 (560)
T 3h99_A 282 D------K-RGDSVSFDEY-------------WKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSN--FRKP-SNLFVHGY 338 (560)
T ss_dssp H------H-HTCSSHHHHH-------------HBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTT--BCCC-SEEEEECC
T ss_pred h------c-cCChhhHHHh-------------CcCCCCceeEEEeccccchhHHHHHHHHHHhCC--CCCC-cEEEEEeE
Confidence 0 0 0001112222 4666 899999999988 5545555544 3666 99999999
Q ss_pred eeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCC-CccccCcc
Q psy17125 807 VVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKD-PTVPIGKN 885 (1281)
Q Consensus 807 vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~-~d~~f~~~ 885 (1281)
|++ +|+|||||+||+|+|.++++ +||+|++||||++.++.. +|++|+.+
T Consensus 339 v~~-~G~KMSKS~GNvv~p~d~i~-----------------------------~~GaDalR~~ll~~~~~~~~d~~f~~~ 388 (560)
T 3h99_A 339 VTV-NGAKMSKSRGTFIKASTWLN-----------------------------HFDADSLRYYYTAKLSSRIDDIDLNLE 388 (560)
T ss_dssp EEE-TTEECCTTTTCCCBHHHHHH-----------------------------HSCHHHHHHHHHHHCCSSCCCEEECHH
T ss_pred EEe-CCeeccccCCCcCCHHHHHH-----------------------------HcCcHHHHHHHHHhCCCCCCCCCcCHH
Confidence 995 99999999999999999999 999999999999988766 89999999
Q ss_pred hhcc--chHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhh
Q psy17125 886 ILNS--SQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSA 963 (1281)
Q Consensus 886 ~l~~--~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~ 963 (1281)
.+.. ..+++++++|++.++.+.+.+...+.. .....|+|++++++++++.+.++|++|+|++|++.+++|+ +++|
T Consensus 389 ~~~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~-~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~--~~~n 465 (560)
T 3h99_A 389 DFVQRVNADIVNKVVNLASRNAGFINKRFDGVL-ASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--DLAN 465 (560)
T ss_dssp HHHHHHHHHCCCCCTHHHHTTHHHHHHHSTTBC-CSSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHH
Confidence 8765 456889999998877665443221111 1234689999999999999999999999999999999998 7789
Q ss_pred HHHHhhcccccccC-CChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCC
Q psy17125 964 FYFTLVKDRLYCDS-INGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSR 1019 (1281)
Q Consensus 964 ~Yle~~k~~~~~~~-~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~ 1019 (1281)
+|++..++|...++ .....+..++.++.++++.+++||+|||||+||++|++|+..
T Consensus 466 ~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~ 522 (560)
T 3h99_A 466 RYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 522 (560)
T ss_dssp HHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC
T ss_pred HHHHhcCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC
Confidence 99999999865443 334445567788899999999999999999999999999743
No 11
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=2.2e-71 Score=686.10 Aligned_cols=457 Identities=21% Similarity=0.295 Sum_probs=374.5
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHH
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNF 96 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~ 96 (1281)
++++|+|+.|+|||||+|||||+|+++++|+++||+|++||+|.+++|+|+||+||+.+|.+.+ .+| +++
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g---~~~-------~~~ 92 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEG---ITP-------RDL 92 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHT---SCH-------HHH
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcC---CCH-------HHH
Confidence 4678999999999999999999999999999999999999999999999999999999999886 788 566
Q ss_pred HHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCCCCcC
Q psy17125 97 ALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVS 176 (1281)
Q Consensus 97 ~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~~~~~ 176 (1281)
++++++.++++|++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++++||+.|++++++.|++..+
T Consensus 93 ~~~~~~~~~~~l~~lgi~~d---~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~---- 165 (536)
T 4dlp_A 93 ADRNTSAFRRMAEVLNSSND---DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRA---- 165 (536)
T ss_dssp HHHHHHHHHHHHHHTTCCCS---EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECT----
T ss_pred HHHHHHHHHHHHHHcCCCCC---cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCC----
Confidence 99999999999999999998 68999999999999999999999999999999999999999998876653000
Q ss_pred ccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCceEe
Q psy17125 177 KSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIEVV 256 (1281)
Q Consensus 177 ~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 256 (1281)
T Consensus 166 -------------------------------------------------------------------------------- 165 (536)
T 4dlp_A 166 -------------------------------------------------------------------------------- 165 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCCCCC
Q psy17125 257 CDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGL 336 (1281)
Q Consensus 257 ~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~~~~ 336 (1281)
T Consensus 166 -------------------------------------------------------------------------------- 165 (536)
T 4dlp_A 166 -------------------------------------------------------------------------------- 165 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccccCCc
Q psy17125 337 EGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHDRP 416 (1281)
Q Consensus 337 ~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~~~ 416 (1281)
T Consensus 166 -------------------------------------------------------------------------------- 165 (536)
T 4dlp_A 166 -------------------------------------------------------------------------------- 165 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEeeh
Q psy17125 417 GTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAK 496 (1281)
Q Consensus 417 ~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~ 496 (1281)
T Consensus 166 -------------------------------------------------------------------------------- 165 (536)
T 4dlp_A 166 -------------------------------------------------------------------------------- 165 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCee
Q psy17125 497 CLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVL 576 (1281)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~ 576 (1281)
T Consensus 166 -------------------------------------------------------------------------------- 165 (536)
T 4dlp_A 166 -------------------------------------------------------------------------------- 165 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCccCCCCCCCCCCceeccccchhHHhhhccccccccccccccCcccCCCCceEEccccccccChhhHHHHHHHh
Q psy17125 577 NLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALAC 656 (1281)
Q Consensus 577 ~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~~p~~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~ 656 (1281)
+| ..|+|||+|++++.++||||+++++++.++++
T Consensus 166 -----~g-----------------------------------------~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~ 199 (536)
T 4dlp_A 166 -----DG-----------------------------------------VRYGPQGTPVEWVEEESYFFRLSAYQDKLLDL 199 (536)
T ss_dssp -----TS-----------------------------------------CEECTTSSBCEEEEEEEEEECGGGGHHHHHHH
T ss_pred -----CC-----------------------------------------CcccCCCCcceEEeccceEEecHHHHHHHHHH
Confidence 00 02556888899999999999999999999999
Q ss_pred hhcc--cccchhHHHHHHHHHH-cCCCccccccc-CCCccceeEecCCeEEechhhHHHHHhhhhhcCCCCccCcCcccc
Q psy17125 657 LEEV--NFVPESAKKTLRDQIA-QRPYWCISRQR-VWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQL 732 (1281)
Q Consensus 657 ~~~~--~~~P~~~r~~~~~~l~-~l~DW~ISRqr-~WG~pIP~~~~~~~i~v~~~~~~~i~~~~~~~g~d~~~~~~~~~l 732 (1281)
+++. .+.|+..++.+.+||+ +++|||||||+ +||+|||. +
T Consensus 200 ~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~--~---------------------------------- 243 (536)
T 4dlp_A 200 YENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPG--D---------------------------------- 243 (536)
T ss_dssp HHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTT--C----------------------------------
T ss_pred HHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCC--C----------------------------------
Confidence 9875 4679999999999998 59999999996 79999993 1
Q ss_pred ccccccccccccccccccccccCCcchhhhcc----------CCCccceeeccceeeehh--hHHHHHHHHhcCCCCCce
Q psy17125 733 LNTSDVNSNVTKSNDILDIWFDSGISWSHVLK----------DKPAHVYMEGMDQINGWF--MSSLLTSVALKHTAPFRN 800 (1281)
Q Consensus 733 ~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~----------~~p~dl~~~G~Dii~~wf--~~~l~~~~~l~~~~Pf~~ 800 (1281)
+++++||||||+++|.+.++ -||.|++++|+||++||. +..+++++ +..||++
T Consensus 244 ------------~~~v~yvWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~---g~~~~~~ 308 (536)
T 4dlp_A 244 ------------EKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSA---QLPLPKR 308 (536)
T ss_dssp ------------TTSEECHHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHT---TCCCCSC
T ss_pred ------------CCCceEEeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHC---CCCCCcE
Confidence 23466677766554433221 179999999999999874 33444432 3457799
Q ss_pred EEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCcc
Q psy17125 801 VFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTV 880 (1281)
Q Consensus 801 v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~ 880 (1281)
|++||||+ .+|+|||||+||+|+|.++++ +||+|++||||++..+.++|+
T Consensus 309 v~~hg~v~-~~G~KMSKS~GNvi~p~d~i~-----------------------------~~GaDalR~~ll~~~~~~~d~ 358 (536)
T 4dlp_A 309 VFAHGFLF-NRGEKMSKSVGNVIDPFELVE-----------------------------RYGLDQLRYFLMREVPFGQDG 358 (536)
T ss_dssp EEEECCEE-C------------CCHHHHHH-----------------------------HHCHHHHHHHHHHHSCTTSCE
T ss_pred EEeeeeEe-eCCceecccCCCCCCHHHHHH-----------------------------HcCcHHHHHHHHhcCCCCCCC
Confidence 99999998 499999999999999999999 999999999999988889999
Q ss_pred ccCcchhccc--hHHHHHHHHHHHHHHHhhcCCCCCC---CCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy17125 881 PIGKNILNSS--QDDVQKIRSSLRYLLGVLHNHSEST---GSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLN 955 (1281)
Q Consensus 881 ~f~~~~l~~~--~~~~~kl~n~~r~~~~~l~~~~~~~---~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~ 955 (1281)
+|+.+.+... .+++++++|+++++...+.+...+. .......|+|++++++++++.+.++|++|+|++|++.+++
T Consensus 359 ~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~ 438 (536)
T 4dlp_A 359 SYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFA 438 (536)
T ss_dssp ECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999988764 3478899998887766543221111 2245688999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCCC
Q psy17125 956 FVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQ 1020 (1281)
Q Consensus 956 f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~~ 1020 (1281)
|+ +++|+|++..|+|.... .+..++.+++.++.++++.+++||+|||||+||++|++|+...
T Consensus 439 l~--~~~n~Y~~~~k~w~l~~-~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~~ 500 (536)
T 4dlp_A 439 VV--AEANRYFAGQEPWALRK-TDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPA 500 (536)
T ss_dssp HH--HHHHHHHHHHCHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCCT
T ss_pred HH--HHHHHHHHhCCchhhcC-CCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCCc
Confidence 98 68999999999965432 1334455678899999999999999999999999999997653
No 12
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=3.8e-71 Score=683.77 Aligned_cols=460 Identities=20% Similarity=0.276 Sum_probs=377.5
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHH
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKN 95 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~ 95 (1281)
-++++|++++|||||||+|||||+++++++|+++||+||+||+|++++|||+||+||+.+|++++ .++ ++
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g---~~~-------~~ 78 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEG---IPA-------AE 78 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHT---SCH-------HH
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcC---CCH-------HH
Confidence 47889999999999999999999999999999999999999999999999999999999999986 778 56
Q ss_pred HHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCccccccccccccCCCCc
Q psy17125 96 FALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHV 175 (1281)
Q Consensus 96 ~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~~t~lad~ev~~~~~~~ 175 (1281)
+++++++.+++++++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++|+|||.|+|++++.|+++.+
T Consensus 79 ~~~~~~~~~~~~~~~lgi~~d---~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~--- 152 (524)
T 2x1l_A 79 LARRNSDVFQRLQEKLNISFD---RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQP--- 152 (524)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS---EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECT---
T ss_pred HHHHHHHHHHHHHHHcCCcCC---CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCC---
Confidence 788999999999999999988 68899999999999999999999999999999999999999998776653000
Q ss_pred CccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCceE
Q psy17125 176 SKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIEV 255 (1281)
Q Consensus 176 ~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 255 (1281)
T Consensus 153 -------------------------------------------------------------------------------- 152 (524)
T 2x1l_A 153 -------------------------------------------------------------------------------- 152 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCCCC
Q psy17125 256 VCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPG 335 (1281)
Q Consensus 256 ~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~~~ 335 (1281)
T Consensus 153 -------------------------------------------------------------------------------- 152 (524)
T 2x1l_A 153 -------------------------------------------------------------------------------- 152 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCcccccccccCcccccccccCCCCCcccCCcchhhcccchhhhcccCchhhhhhhhhhcccccccccccCC
Q psy17125 336 LEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHDR 415 (1281)
Q Consensus 336 ~~gl~~~~~~~~~v~~l~e~~~~~~~~~~~~~~~~~r~~~~v~~~~~~~w~~~~~~~~~e~~~~~~~~~~ig~~~~~~~~ 415 (1281)
T Consensus 153 -------------------------------------------------------------------------------- 152 (524)
T 2x1l_A 153 -------------------------------------------------------------------------------- 152 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccCCCCCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEee
Q psy17125 416 PGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVA 495 (1281)
Q Consensus 416 ~~t~laeaeiey~~~~~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a 495 (1281)
T Consensus 153 -------------------------------------------------------------------------------- 152 (524)
T 2x1l_A 153 -------------------------------------------------------------------------------- 152 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHhHHhhccCCeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCe
Q psy17125 496 KCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPV 575 (1281)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi 575 (1281)
T Consensus 153 -------------------------------------------------------------------------------- 152 (524)
T 2x1l_A 153 -------------------------------------------------------------------------------- 152 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccCCCCccCCCCCCCCCCceeccccchhHHhhhccccccccccccccCccc-CCCCceEEccccccccChhhHHHHHH
Q psy17125 576 LNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDW-RTKKPVILKASQQWFIDTERIKPEAL 654 (1281)
Q Consensus 576 ~~vid~~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~~~~~~~p~~~-Rsg~~v~~~~~~qWf~~~~~~~~~~~ 654 (1281)
+| +.|+ |||.|++.+.++|||+++++++++++
T Consensus 153 ------~G-----------------------------------------~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~ 185 (524)
T 2x1l_A 153 ------DG-----------------------------------------TRIATETGAPVTWTEEQTYFFRLSAYTDRLL 185 (524)
T ss_dssp ------TS-----------------------------------------CEEETTTCCBEEEEEEEEEEECGGGSHHHHH
T ss_pred ------CC-----------------------------------------CccccccCCcceEEecCCeEeeHHHHHHHHH
Confidence 00 1244 68888999999999999999999999
Q ss_pred Hhhhc--ccccchhHHHHHHHHHH-cCCCccccccc-CCCccceeEecCCeEEechhhHHHHHhhhhhcCCCCccCcCcc
Q psy17125 655 ACLEE--VNFVPESAKKTLRDQIA-QRPYWCISRQR-VWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVE 730 (1281)
Q Consensus 655 e~~~~--~~~~P~~~r~~~~~~l~-~l~DW~ISRqr-~WG~pIP~~~~~~~i~v~~~~~~~i~~~~~~~g~d~~~~~~~~ 730 (1281)
+++++ ..+.|+..++.+.+|+. +++|||||||| +||+|||. .++.+
T Consensus 186 ~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~-~~~~~----------------------------- 235 (524)
T 2x1l_A 186 ALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPD-HPDHV----------------------------- 235 (524)
T ss_dssp HHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETT-EEEEE-----------------------------
T ss_pred HHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCC-CCCCE-----------------------------
Confidence 99985 34679999999999994 69999999998 59999992 22333
Q ss_pred ccccccccccccccccccccccccCCcchhhhc-----------cCCCccceeeccceeeehhhHHHHHHHHhcCCCCCc
Q psy17125 731 QLLNTSDVNSNVTKSNDILDIWFDSGISWSHVL-----------KDKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFR 799 (1281)
Q Consensus 731 ~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l-----------~~~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~ 799 (1281)
+|+||||++.|...+ .-||.|+|++|+||++||.........+. +..||+
T Consensus 236 ------------------~yvWfds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~l~~~-g~~~~~ 296 (524)
T 2x1l_A 236 ------------------MYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSA-GLPLPK 296 (524)
T ss_dssp ------------------ECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHHH-TCCCCS
T ss_pred ------------------EEEecCCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechhHhHHHHHHHHHHHC-CCCCCc
Confidence 444444432211111 01689999999999987743322222222 456779
Q ss_pred eEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCc
Q psy17125 800 NVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPT 879 (1281)
Q Consensus 800 ~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d 879 (1281)
++++||||++ +|+|||||+||+|+|.++++ +||+|++|||+++.++..+|
T Consensus 297 ~v~~hG~v~~-~G~KMSKS~GN~v~p~d~i~-----------------------------~~g~DalR~~ll~~~~~~~d 346 (524)
T 2x1l_A 297 RIFAHGWLLN-RGEKMSKSIGNVVDPVNLVD-----------------------------TFGLDQVRYFLLREVPFGQD 346 (524)
T ss_dssp CEEEECCEEE-CSCSEETTTEESSCHHHHHH-----------------------------HHCHHHHHHHHHHHSCTTSC
T ss_pred EEEECcEEEe-CCcccCCcCCCCCCHHHHHH-----------------------------HcChHHHHHHHHhcCCCCCC
Confidence 9999999995 89999999999999999999 99999999999997777999
Q ss_pred cccCcchhccchH--HHHHHHHHHHHHHHhhcCCCCCC---CCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy17125 880 VPIGKNILNSSQD--DVQKIRSSLRYLLGVLHNHSEST---GSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLL 954 (1281)
Q Consensus 880 ~~f~~~~l~~~~~--~~~kl~n~~r~~~~~l~~~~~~~---~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~ 954 (1281)
++|+.+.+.++.+ ++++++|+++++...+.+...+. .......|++++++++++++.+.++|++|+|++|++.++
T Consensus 347 ~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~ 426 (524)
T 2x1l_A 347 GSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIW 426 (524)
T ss_dssp EEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999877543 67788888877655432211110 123467899999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHhhcccccccCC---ChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhhCCCC
Q psy17125 955 NFVVNELSAFYFTLVKDRLYCDSI---NGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSR 1019 (1281)
Q Consensus 955 ~f~~~~l~~~Yle~~k~~~~~~~~---~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~L~~~ 1019 (1281)
+|+ ..+|+|++..++|...... +.....+++.++.++++.+++||+|||||+||++|+.|+..
T Consensus 427 ~l~--~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 492 (524)
T 2x1l_A 427 SVL--GAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQP 492 (524)
T ss_dssp HHH--HHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCC
T ss_pred HHH--HHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 999 4679999999997543321 12223456778899999999999999999999999999765
No 13
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=9.2e-71 Score=682.09 Aligned_cols=324 Identities=16% Similarity=0.183 Sum_probs=255.1
Q ss_pred CCCceEEccccccccChhhHHHHHHHhhhc--ccccchhHHHHHHHHHH-cCCCccccc----ccCCCccceeEecCCeE
Q psy17125 630 TKKPVILKASQQWFIDTERIKPEALACLEE--VNFVPESAKKTLRDQIA-QRPYWCISR----QRVWGVPIPVFYDGDTI 702 (1281)
Q Consensus 630 sg~~v~~~~~~qWf~~~~~~~~~~~e~~~~--~~~~P~~~r~~~~~~l~-~l~DW~ISR----qr~WG~pIP~~~~~~~i 702 (1281)
||+|++.+.++||||+++++++++++++++ ..+.|+..++++.+||+ +++|||||| +++||+|||. .+++++
T Consensus 179 ~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~-~~~~v~ 257 (564)
T 3kfl_A 179 SGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPG-DERHCI 257 (564)
T ss_dssp TSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETT-EEEEEE
T ss_pred CCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCC-CCCCEE
Confidence 678888999999999999999999999986 35789999999999998 699999999 7899999994 224455
Q ss_pred EechhhH-HHHHhhhhhcCCCCccCcCccccccccccccccccccccccccccCCcchhhhccCCCccceeeccceeeeh
Q psy17125 703 IVNEANI-KHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDKPAHVYMEGMDQINGW 781 (1281)
Q Consensus 703 ~v~~~~~-~~i~~~~~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~~~p~dl~~~G~Dii~~w 781 (1281)
|||.+.. .++... . ||.. ..+.++++.+|.+ ..-||+|++++|+||++||
T Consensus 258 yVWfDa~~~y~s~~-~------~~~~---------------~~~~~~~~~~~~~-------~~~wp~dv~~~GkDii~FH 308 (564)
T 3kfl_A 258 YVWLDALFNYYTGA-L------TRVA---------------TDGTETLDEDHHA-------LNRWPADVHVVGKDILKFH 308 (564)
T ss_dssp CHHHHHHTHHHHHH-H------EEEC---------------TTSCEEECSSSTT-------TTCCSCSEEEEEGGGHHHH
T ss_pred EEeccCcHHHHHHh-C------cccc---------------ccccccchhcchh-------hhcCccceEEEeecccchH
Confidence 6665432 222221 0 0000 0000011111100 0017999999999999987
Q ss_pred h--hHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCC
Q psy17125 782 F--MSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLP 859 (1281)
Q Consensus 782 f--~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~ 859 (1281)
- +..+++++ +..||++|++|||| +.+|+|||||+||+|+|.++++
T Consensus 309 ~~~wpa~L~a~---g~~~~~~v~~hg~v-~~~G~KMSKS~GNvV~p~d~i~----------------------------- 355 (564)
T 3kfl_A 309 AIYWPAFLMSA---ELPLPERLVSHGWW-TKDHKKISKSLGNAFDPVEKAK----------------------------- 355 (564)
T ss_dssp HTHHHHHHHHT---TCCCCSCEEEECCE-EETTEECCTTTTCCCCHHHHHH-----------------------------
T ss_pred HHHHHHHHHhC---CCCCCcEEEEcccE-eeCCccccccCCCCCCHHHHHH-----------------------------
Confidence 4 43444443 34677999999999 5999999999999999999999
Q ss_pred CCchhHHHHHHHhcCCCCCccccCcchhccc--hHHHHHHHHHHHHHHHhhcCCCCCC--CCcCcHHHHHHHHHHHHHHH
Q psy17125 860 AYGVDVLRWWVAAHASKDPTVPIGKNILNSS--QDDVQKIRSSLRYLLGVLHNHSEST--GSISRYVDVYMLKRLCEFQN 935 (1281)
Q Consensus 860 ~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~--~~~~~kl~n~~r~~~~~l~~~~~~~--~~~~~~~d~~il~~l~~~~~ 935 (1281)
+||+|++||||++..+.++|++|+.+.+... .+++++++|+++|+.+.+.++.... .......|+|++++++++++
T Consensus 356 ~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~g~~p~~~~~~~~d~~ll~~l~~~~~ 435 (564)
T 3kfl_A 356 EFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGMWPEPAEYSESDKTLIASLNNLAG 435 (564)
T ss_dssp HHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999888899999999998764 3489999999999988765322111 12356789999999999999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHhh
Q psy17125 936 TMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSH 1015 (1281)
Q Consensus 936 ~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~~~ 1015 (1281)
.+.++|++|+|++|++.+++|+ .++|+|++..+||...+ .+...+.+++.++.++++.+++||+|||||+||++|++
T Consensus 436 ~v~~a~e~~~~~~a~~~i~~l~--~~~n~Y~~~~kpW~l~~-~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~ 512 (564)
T 3kfl_A 436 TVDHYYCLPDIQHALIAIFDVL--RSLNAYVTENAPWKLVK-MDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDA 512 (564)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHTT-TCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHH--HHHHHHHHhcCChhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Confidence 9999999999999999999999 57899999999965443 23444556788999999999999999999999999999
Q ss_pred CCCC
Q psy17125 1016 LPSR 1019 (1281)
Q Consensus 1016 L~~~ 1019 (1281)
|+..
T Consensus 513 Lg~~ 516 (564)
T 3kfl_A 513 LGVP 516 (564)
T ss_dssp HTCC
T ss_pred cCCC
Confidence 9754
No 14
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=1.4e-70 Score=674.42 Aligned_cols=310 Identities=19% Similarity=0.272 Sum_probs=241.2
Q ss_pred ccCCCCceEEccccccccChhhHHHHHHHhhhcc--cccchhHHHHHHHHHH-cCCCccccc--cc-CCCccceeEecCC
Q psy17125 627 DWRTKKPVILKASQQWFIDTERIKPEALACLEEV--NFVPESAKKTLRDQIA-QRPYWCISR--QR-VWGVPIPVFYDGD 700 (1281)
Q Consensus 627 ~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~--~~~P~~~r~~~~~~l~-~l~DW~ISR--qr-~WG~pIP~~~~~~ 700 (1281)
|+|||.|++.+.++|||++++++++++++++++. .+.|+..++.+.+|++ +++|||||| |+ +||+|+|. +
T Consensus 147 c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~--~-- 222 (497)
T 2csx_A 147 CPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPF--D-- 222 (497)
T ss_dssp -----------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETT--E--
T ss_pred CCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCC--C--
Confidence 3445566666777899999999999999999864 4679989999999997 589999999 76 69999994 1
Q ss_pred eEEechhhHHHHHhhhhhcCCCCccCcCccccccccccccccccccccccccccCCcchhhhccC-----CCccceeecc
Q psy17125 701 TIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKD-----KPAHVYMEGM 775 (1281)
Q Consensus 701 ~i~v~~~~~~~i~~~~~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~~-----~p~dl~~~G~ 775 (1281)
+.+++++||||++.|.+.+.+ +|.|+|++|+
T Consensus 223 --------------------------------------------~~~~i~vW~ds~~~~~s~~~~~~~~~~p~di~~~G~ 258 (497)
T 2csx_A 223 --------------------------------------------PEHTIYVWFDALFNYISALEDKVEIYWPADLHLVGK 258 (497)
T ss_dssp --------------------------------------------EEEEECSHHHHHTHHHHTTTTTHHHHCSCSCEEEEG
T ss_pred --------------------------------------------CCceEEEecccchhhcccCCCcchhhCCceEEEeec
Confidence 124567788876655443322 6999999999
Q ss_pred ceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccc
Q psy17125 776 DQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGA 855 (1281)
Q Consensus 776 Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~ 855 (1281)
||+++|.........++ +..||+++++||||++ +|+|||||+||+|+|.++++
T Consensus 259 D~~~~H~~~~~a~l~~~-g~~~~~~~~~~G~v~~-~G~KMSKS~GN~i~~~dli~------------------------- 311 (497)
T 2csx_A 259 DILRFHTVYWPAFLMSL-GYELPKKVFAHGWWTV-EGKKMSKTLGNVVDPYEVVQ------------------------- 311 (497)
T ss_dssp GGHHHHHTHHHHHHHHH-TCCCCSCEEEECCEES-SSSBCCTTTTCCCCHHHHHH-------------------------
T ss_pred chhHhHHHHHHHHHHHc-CCCCCcEEEECcEEEe-CCceeCCcCCCCCCHHHHHH-------------------------
Confidence 99998854432222233 4567899999999995 99999999999999999999
Q ss_pred cCCCCCchhHHHHHHHhcCCCCCccccCcchhccch--HHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHHHHHHHHHH
Q psy17125 856 KKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQ--DDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKRLCEF 933 (1281)
Q Consensus 856 ~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~--~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~il~~l~~~ 933 (1281)
+||+|++|||+++.++..+|++|+.+.+.+.. +++++++|++.++...+.++..+... ...|++++++++++
T Consensus 312 ----~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~--~~~d~~l~~~l~~~ 385 (497)
T 2csx_A 312 ----EYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVS--GARDEEYAKIAQES 385 (497)
T ss_dssp ----HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBC--CCCCTTHHHHHHHH
T ss_pred ----HCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHHH
Confidence 99999999999998888999999999987653 36677888877776654432211111 34578999999999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccHHHHH
Q psy17125 934 QNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVY 1013 (1281)
Q Consensus 934 ~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~laeel~ 1013 (1281)
++.+.++|++|+|++|++.+++|+ +.+|.|++..++|....+.......+++.++.++++.+++||+|||||+||++|
T Consensus 386 ~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~ 463 (497)
T 2csx_A 386 IKNYENYMEKVNFYKAIEEILKFT--SYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEAL 463 (497)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHH
Confidence 999999999999999999999999 578999999999854432233334467888999999999999999999999999
Q ss_pred hhCCCC
Q psy17125 1014 SHLPSR 1019 (1281)
Q Consensus 1014 ~~L~~~ 1019 (1281)
+.|+..
T Consensus 464 ~~L~~~ 469 (497)
T 2csx_A 464 QMLGEK 469 (497)
T ss_dssp HHTTCS
T ss_pred HHcCCC
Confidence 999754
No 15
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=3.7e-70 Score=671.93 Aligned_cols=310 Identities=20% Similarity=0.289 Sum_probs=244.7
Q ss_pred ccCCCCceEEccccccccChhhHHHHHHHhhhcc--cccchhHHHHHHHHHH-cCCCccccc--cc-CCCccceeEecCC
Q psy17125 627 DWRTKKPVILKASQQWFIDTERIKPEALACLEEV--NFVPESAKKTLRDQIA-QRPYWCISR--QR-VWGVPIPVFYDGD 700 (1281)
Q Consensus 627 ~~Rsg~~v~~~~~~qWf~~~~~~~~~~~e~~~~~--~~~P~~~r~~~~~~l~-~l~DW~ISR--qr-~WG~pIP~~~~~~ 700 (1281)
|+|||.|++.+.++|||++++++++.+++++++. .+.|+..++.+.+|++ +++|||||| |+ +||+|||. +
T Consensus 144 c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~--~-- 219 (500)
T 2d5b_A 144 CPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPW--D-- 219 (500)
T ss_dssp CTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETT--E--
T ss_pred CCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCC--C--
Confidence 5667778888889999999999999999999873 3569999999999996 479999999 77 69999994 1
Q ss_pred eEEechhhHHHHHhhhhhcCCCCccCcCccccccccccccccccccccccccccCCcchhhhcc---------CCCccce
Q psy17125 701 TIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLK---------DKPAHVY 771 (1281)
Q Consensus 701 ~i~v~~~~~~~i~~~~~~~g~d~~~~~~~~~l~~~~~~~~~~~~~~dvlD~WFdS~l~w~~~l~---------~~p~dl~ 771 (1281)
+++++|+||||++.|...++ -+|.|+|
T Consensus 220 --------------------------------------------~~~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~di~ 255 (500)
T 2d5b_A 220 --------------------------------------------ENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWH 255 (500)
T ss_dssp --------------------------------------------EEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGEEE
T ss_pred --------------------------------------------CCCeeEEccccchhhHHHcCCCCCchHHHcCCCeEE
Confidence 12456677776543322211 1688999
Q ss_pred eeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccc
Q psy17125 772 MEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDI 851 (1281)
Q Consensus 772 ~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~ 851 (1281)
++|+||+++|.........++ +..||+++++||+|++.+|+|||||+||+|+|.++++
T Consensus 256 ~~G~D~~~fh~~~~~a~~~~~-g~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~--------------------- 313 (500)
T 2d5b_A 256 LIGKDILKPHAVFWPTMLKAA-GIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLE--------------------- 313 (500)
T ss_dssp EEEGGGHHHHHTHHHHHHHHH-TCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHH---------------------
T ss_pred EEeechhhhHHHHHHHHHHHc-CCCCCcEEEECceEEeCCCCcccccCCCCCCHHHHHH---------------------
Confidence 999999998854322222223 4567899999999997799999999999999999999
Q ss_pred cccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccch--HHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHHHHHH
Q psy17125 852 TQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQ--DDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKR 929 (1281)
Q Consensus 852 ~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~--~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~il~~ 929 (1281)
+||+|++|||+++.++..+|++|+.+.+.+.. +++++++|++.++...+.+...+..... .+++++++
T Consensus 314 --------~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~--~~~~l~~~ 383 (500)
T 2d5b_A 314 --------KYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEP--VAGEELAE 383 (500)
T ss_dssp --------HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCC--CCCGGGGG
T ss_pred --------hcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCch--hHHHHHHH
Confidence 99999999999997777999999999987643 3677888887766554322111111111 13688899
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHhccccCccH
Q psy17125 930 LCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLA 1009 (1281)
Q Consensus 930 l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~la 1009 (1281)
++++++.+.++|++|+|++|++.+++|+ ..+|+|++..|+|....+ ...+..+++.++.++++.+++||+|||||+|
T Consensus 384 l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~w~~~~~-~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~a 460 (500)
T 2d5b_A 384 GTGLAGRLRPLVRELKFHVALEEAMAYV--KALNRYINEKKPWELFKK-EPEEARAVLYRVVEGLRIASILLTPAMPDKM 460 (500)
T ss_dssp GGGHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhccC-cHHHHHHHHHHHHHHHHHHHHHhhCcccHHH
Confidence 9999999999999999999999999999 578999999999855432 1223346778899999999999999999999
Q ss_pred HHHHhhCCCC
Q psy17125 1010 EEVYSHLPSR 1019 (1281)
Q Consensus 1010 eel~~~L~~~ 1019 (1281)
|++|+.|+..
T Consensus 461 eei~~~l~~~ 470 (500)
T 2d5b_A 461 AELRRALGLK 470 (500)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCC
Confidence 9999999765
No 16
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.6e-36 Score=361.58 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=113.5
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEee-ceeeccCCCcccccCCCccChhhhhcccccCcccccccCc
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLH-GFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGN 844 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~h-G~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn 844 (1281)
.|.|++++|+||+++|......++.++.+..||+++++| |++. .+|+|||||+||+|+|.++++
T Consensus 243 ~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~~ll~-------------- 307 (414)
T 3c8z_A 243 TGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDGHKMSKSRGNLVLVSQLRA-------------- 307 (414)
T ss_dssp SCEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC--------------CBHHHHHH--------------
T ss_pred CCceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCCeEcccccCCcCCHHHHhh--------------
Confidence 489999999999999999888888888777788999999 8987 699999999999999999999
Q ss_pred ccccccccccccCCCC-CchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHH
Q psy17125 845 VISAHDITQGAKKLPA-YGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVD 923 (1281)
Q Consensus 845 ~~~~~~~~~~~~~i~~-yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d 923 (1281)
+ ||+|++||||++ ++..+|++|+.+.+..+.+++++++|+++++ . + .
T Consensus 308 ---------------~g~g~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~~l~~l~n~~~~~----~----~---~----- 355 (414)
T 3c8z_A 308 ---------------QGVDPSAIRLGLFS-GHYREDRFWSNEVLDEANARLARWRSATALP----E----A---P----- 355 (414)
T ss_dssp ---------------TTCCHHHHHHHHHT-SCTTSCBCCCHHHHHHHHHHHHHHHHHHTSS----C----B---S-----
T ss_pred ---------------ccCCcchheeEEEe-cCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc----c----c---h-----
Confidence 8 999999999999 6779999999999999999999999987543 1 0 0
Q ss_pred HHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHhhh
Q psy17125 924 VYMLKRLCEFQNTMDTLY-GEFQYARASRVLLNFVVNELS 962 (1281)
Q Consensus 924 ~~il~~l~~~~~~v~~~~-e~~~~~~ai~~i~~f~~~~l~ 962 (1281)
.++++.+++.++| ++|+|++|++.+++|+ +.++
T Consensus 356 -----~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~-~~~n 389 (414)
T 3c8z_A 356 -----DATDVIARVRQYLADDLDTPKALAALDGWC-TDAL 389 (414)
T ss_dssp -----CCHHHHHHHHHHHHBTCCHHHHHHHHHHHH-HHHH
T ss_pred -----hHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHH
Confidence 1256777899999 7999999999999999 5553
No 17
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1.6e-37 Score=401.00 Aligned_cols=200 Identities=32% Similarity=0.599 Sum_probs=170.3
Q ss_pred cccceeeeeeehhcccccCcccccchhhhhccCCCCCCCc-------Cccccceec--cCC---CccCCCcccCCCCCCC
Q psy17125 1055 LSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTF-------SSFCHFKVY--HHL---NLITNQGKYSPDAGPG 1122 (1281)
Q Consensus 1055 ~s~q~~l~~~~~~~~~~~~pilp~~aee~~~~~~~~~gt~-------~~~~d~~~~--~~~---~~i~~~G~~~~~~~~~ 1122 (1281)
..+.++.+|++ ....||++ .+ ++.+++||| |++.||+++ |+| ++||++|+|++++| .
T Consensus 293 l~g~~~~~P~~----~~~~pvi~---~~---~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~-~ 361 (917)
T 1ffy_A 293 LEWVVAQHPFL----DRESLVIN---GD---HVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGG-Q 361 (917)
T ss_dssp CTTCCCBCCTT----CCSBCCCC---CC---SSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCS-S
T ss_pred ccCCEEECCCC----CCeeeEEe---cc---ccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCccc-c
Confidence 45666777774 34456655 33 444555554 888899887 555 56999999999986 5
Q ss_pred CCCCchhccchHHHHhhccCCc-eeeeeeeeccCccccCCCcEEEcccceecccccccHHHHHHhhcCceeeccccHHHH
Q psy17125 1123 LEGLNILGEGKDQVLHLVEPDV-LWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSL 1201 (1281)
Q Consensus 1123 ~~g~~~~~~~~~~v~~l~~~~~-l~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 1201 (1281)
|+||++++||++|++.|.+.|+ ++.++++|+||||||||+|||+|+|+|||++|++++++|++++++++|+|+++++++
T Consensus 362 ~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~ 441 (917)
T 1ffy_A 362 FEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRI 441 (917)
T ss_dssp CSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcccCHHHHHHH
Confidence 9999999999998899988886 489999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCceeeecccccCceecEEEeCC-ceeechhhhhhhhcccCcCcccccccCCcccccCC
Q psy17125 1202 RDQIAQRPYWCISRQRVWGVPIPVFYDGD-TIIVNEANIKHFCTLIDEHGPDFWWSLPVEQLLNT 1265 (1281)
Q Consensus 1202 ~~~~~~~~dWciSRqr~wG~~iP~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~Wf~~~~~~~~~~ 1265 (1281)
.+||++++||||||||+||||||+|||++ ..+++++.+.+++++++++|.+.||+.++++|+|+
T Consensus 442 ~~~l~~~~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~ 506 (917)
T 1ffy_A 442 YNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPE 506 (917)
T ss_dssp HHHHHHCCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSST
T ss_pred HHHHhcCccceeeccCCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhccc
Confidence 99999999999999999999999999974 46677778888777777788888888777778774
No 18
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.6e-35 Score=351.53 Aligned_cols=126 Identities=21% Similarity=0.187 Sum_probs=113.3
Q ss_pred cEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q psy17125 20 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALE 99 (1281)
Q Consensus 20 ~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~ 99 (1281)
+..+....|||+|.+||||+|+++++|+++||+||+||+|.+++|+|++|.+|+.+|.+.+ .++ ++++++
T Consensus 25 ~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g---~~~-------~e~a~~ 94 (462)
T 3tqo_A 25 KVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENK---ESP-------AALAER 94 (462)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTT---SCH-------HHHHHH
T ss_pred eEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcC---CCH-------HHHHHH
Confidence 3444456789999999999999999999999999999999999999999999999999886 676 778999
Q ss_pred HHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee-CcceeecCCc
Q psy17125 100 TINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD-LKPVYWSPSS 159 (1281)
Q Consensus 100 ~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~v~w~p~~ 159 (1281)
+++.+++++++|||++||. .+.. .+|...++++|.+|+++|++|++ .+.||||+.+
T Consensus 95 ~~~~f~~d~~~LgI~~d~~-~pra---Te~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~ 151 (462)
T 3tqo_A 95 FIQILHEDEKALRVLSPDQ-EPRA---TQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRR 151 (462)
T ss_dssp HHHHHHHHHHHHTCCCCSB-CCBG---GGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTT
T ss_pred HHHHHHHHHHHcCCCCCcc-ccCh---hhHHHHHHHHHHHHHHCCCEEEecCCcEEecccc
Confidence 9999999999999999976 2433 38999999999999999999999 7999999874
No 19
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=2.7e-35 Score=350.55 Aligned_cols=124 Identities=14% Similarity=0.094 Sum_probs=98.4
Q ss_pred cEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEeccc----------CCCCchHHHHHHHhcccCCCHHHH
Q psy17125 20 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGW----------DCHGLPIELKAITSKDKLLSPLDI 89 (1281)
Q Consensus 20 ~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~----------D~~G~pie~~a~~~~~~~~~~~e~ 89 (1281)
++|+ .+|+|+|.+||||||+++++|+++||+||+||+|.|++|+ |+||.+|+.+|.+++ +++
T Consensus 44 ~~Yv--cgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g---~~~--- 115 (501)
T 3sp1_A 44 KVYA--CGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKG---LTV--- 115 (501)
T ss_dssp EEEE--CCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC----------------------CCH---
T ss_pred eEEe--CCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcC---CCH---
Confidence 3444 4678889999999999999999999999999999999765 666999999999886 788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCcceeecCCc
Q psy17125 90 RKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSS 159 (1281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~w~p~~ 159 (1281)
+++++++++.+++++++|||++||. .|.+++|...++++|.+|+++|++|++.+.||||+.+
T Consensus 116 ----~e~a~~~~~~f~~d~~~Lgi~~d~~----~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~ 177 (501)
T 3sp1_A 116 ----YEISEFFTEAFFNDCRKLNIVYPDK----VLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC 177 (501)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCCCCSE----EEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCCCCc----ccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc
Confidence 6779999999999999999999954 3567899999999999999999999999999999875
No 20
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=1.4e-35 Score=313.69 Aligned_cols=180 Identities=30% Similarity=0.513 Sum_probs=155.3
Q ss_pred CCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEeehhhHHhHHhhccCCee
Q psy17125 432 ISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKWTFQTDID 511 (1281)
Q Consensus 432 ~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~ 511 (1281)
.|+++||+|++.+.... ...+.+++||||||||||||+||||||+++|+.+...++.|++++++++++..+ +.+
T Consensus 2 ~S~~i~V~F~~~~~~~~---~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~~~~i~a~~~~~~~~~~---~~~ 75 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKKL---GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGE---GTP 75 (186)
T ss_dssp -CCEEEEEEEBSCGGGG---TCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETTEEEEEEHHHHHHHHCT---TSC
T ss_pred ccceEEEEEEeCCCccc---cCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCCcchHHHHHHHHHHhhc---CcE
Confidence 47899999998653110 112468999999999999999999999999999998788999999999998764 467
Q ss_pred EeccccccccCCcccccCCC---ccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCeecccCCCCccCCC
Q psy17125 512 VVCDFPGQYLQDITYIHPIN---KEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPD 588 (1281)
Q Consensus 512 ~~~~~~G~~L~g~~~~hPl~---~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid~~G~~~~~ 588 (1281)
++++++|.+|.|.+++||+. +.. +||+.++||++++|||+||++||||++||++|++||||++++||++|+|++.
T Consensus 76 ~~~~~~G~~l~g~~~~~P~~~~~~~~--ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~~G~~~~~ 153 (186)
T 1wny_A 76 VLKTFPGKALEGLPYTPPYPQALEKG--YFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE 153 (186)
T ss_dssp EEEEEEHHHHTTCBBCCSSCCCCSSC--CBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCTTSBBCST
T ss_pred EEEEEEcccccCcEEECCccccCCCE--EEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCCceEeeeCCCccCccC
Confidence 78899999999999999996 443 9999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCceeccccchhHHhhhcc--ccccccccccc
Q psy17125 589 AGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHS 623 (1281)
Q Consensus 589 ~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~ 623 (1281)
+ |.|+.++ +|++.|++.|++ .+++.+.+.|+
T Consensus 154 -~--~~Gl~v~-~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 154 -P--FKGLYFR-EANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp -T--CTTCBHH-HHHHHHHHHHHHTTCEEEEEC----
T ss_pred -C--CCCcCHH-HHHHHHHHHHHHCCCeecceeEEcC
Confidence 4 9999997 799999999998 46677777775
No 21
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=7.7e-36 Score=381.92 Aligned_cols=187 Identities=26% Similarity=0.385 Sum_probs=154.7
Q ss_pred cccccchhhhhccCCCCCCCc-----Cccccceec--cCC---CccCCCcccCCCC--CCCCCCCchhccchHHHHhhcc
Q psy17125 1074 PIMPHLAEEVYSHLPSRQGTF-----SSFCHFKVY--HHL---NLITNQGKYSPDA--GPGLEGLNILGEGKDQVLHLVE 1141 (1281)
Q Consensus 1074 pilp~~aee~~~~~~~~~gt~-----~~~~d~~~~--~~~---~~i~~~G~~~~~~--~~~~~g~~~~~~~~~~v~~l~~ 1141 (1281)
.-+|.++++ |+.+.+|+|.+ |+++||+++ |+| ++||++|++++++ | .|.||++++||++|+.+|.+
T Consensus 250 ~~ipii~~~-~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g-~~~Gl~~~~a~~~iv~~L~~ 327 (862)
T 1gax_A 250 VWIPILADP-AVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPE-ALRGLDRFEARRKAVELFRE 327 (862)
T ss_dssp CBCCEEECT-TCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCT-TTSSSBSSHHHHHHHHHHHT
T ss_pred CeeeEEecc-ccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCc-ccCCcCHHHHHHHHHHHHHh
Confidence 334545554 44444444442 999999887 676 5689999999988 6 49999999999999999999
Q ss_pred CCce-eeeeeeeccCccccCCCcEEEcccceecccccccHHHHHHhhc--CceeeccccHHHHHHHHccCCceeeecccc
Q psy17125 1142 PDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLE--GVNFVPESAKKSLRDQIAQRPYWCISRQRV 1218 (1281)
Q Consensus 1142 ~~~l-~~e~~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~--~~~~~P~~~~~~~~~~~~~~~dWciSRqr~ 1218 (1281)
.|++ +.++++|+||||||||+|||+++++|||+++++++++++++++ +++|+|+++++++.+||++++|||||||||
T Consensus 328 ~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~ 407 (862)
T 1gax_A 328 AGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLW 407 (862)
T ss_dssp TTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCS
T ss_pred CCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccC
Confidence 9976 8999999999999999999999999999999999999999995 799999999999999999999999999999
Q ss_pred cCceecEEEeCCc--eeech------hhhh-hhh----cccCcCcccccccCCcccc
Q psy17125 1219 WGVPIPVFYDGDT--IIVNE------ANIK-HFC----TLIDEHGPDFWWSLPVEQL 1262 (1281)
Q Consensus 1219 wG~~iP~~~~~~~--~~~~~------~~~~-~~~----~~~~~~~~d~Wf~~~~~~~ 1262 (1281)
||||||+|||.++ +.|.. +... ..| -.+++|++||||+|+...+
T Consensus 408 WG~pIP~w~~~~~~~i~v~~~~~l~~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~ 464 (862)
T 1gax_A 408 WGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPL 464 (862)
T ss_dssp SSCCCCCEEETTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTT
T ss_pred CCcccCceecCCCCEEEEeccccccccchhhhhcCchheecCCcccceeeccCCcch
Confidence 9999999999753 44433 1110 001 1268999999999886654
No 22
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=1.1e-34 Score=306.65 Aligned_cols=183 Identities=30% Similarity=0.523 Sum_probs=159.1
Q ss_pred cCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCce
Q psy17125 175 VSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIE 254 (1281)
Q Consensus 175 ~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 254 (1281)
+|+++||+|++.+.... ...+.+++||||||||||||+||+|||+.+|+++++.++.+++++++++.+..+ +++
T Consensus 2 ~S~~i~V~F~~~~~~~~---~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~~~~i~a~~~~~~~~~~---~~~ 75 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKKL---GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGE---GTP 75 (186)
T ss_dssp -CCEEEEEEEBSCGGGG---TCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETTEEEEEEHHHHHHHHCT---TSC
T ss_pred ccceEEEEEEeCCCccc---cCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCCcchHHHHHHHHHHhhc---CcE
Confidence 58899999998652110 112579999999999999999999999999999999889999999999876543 567
Q ss_pred EeecccCCcccccccccCCccc-CcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCC
Q psy17125 255 VVCDFPGQYLQDITYIHPINKE-QRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAG 333 (1281)
Q Consensus 255 ~~~~~~G~~l~~~~~~~P~~~~-~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~ 333 (1281)
++.+++|.+|.|++|+|||+.. ++.+||++++||++++|||+||+|||||++||.+|+++|||++++++++|+|.++ +
T Consensus 76 ~~~~~~G~~l~g~~~~~P~~~~~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~~G~~~~~-~ 154 (186)
T 1wny_A 76 VLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P 154 (186)
T ss_dssp EEEEEEHHHHTTCBBCCSSCCCCSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCTTSBBCST-T
T ss_pred EEEEEEcccccCcEEECCccccCCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCCceEeeeCCCccCccC-C
Confidence 8899999999999999999622 4789999999999999999999999999999999999999999999999999988 4
Q ss_pred CCCCCccccCCCcccccccccCcccc-cccccCC
Q psy17125 334 PGLEGLNILGDGKDQVLHLVEPDVLW-TENYQHS 366 (1281)
Q Consensus 334 ~~~~gl~~~~~~~~~v~~l~e~~~~~-~~~~~~~ 366 (1281)
|+|+.+.++++.++..|++.|.+. .++|.|+
T Consensus 155 --~~Gl~v~~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 155 --FKGLYFREANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp --CTTCBHHHHHHHHHHHHHHTTCEEEEEC----
T ss_pred --CCCcCHHHHHHHHHHHHHHCCCeecceeEEcC
Confidence 999999999999999999999775 8888885
No 23
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=1.7e-32 Score=329.89 Aligned_cols=151 Identities=17% Similarity=0.265 Sum_probs=125.5
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEee-ceeeccCCCcccccCCCccChhhhhcccccCcccccccCc
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLH-GFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGN 844 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~h-G~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn 844 (1281)
.+.|++++|+|++++|....+..+.++.+. ||.+.++| ||++ .+|+|||||+||+|+|.++++
T Consensus 219 ~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~dll~-------------- 282 (461)
T 1li5_A 219 NHFDIHGGGSDLMFPHHENEIAQSTCAHDG-QYVNYWMHSGMVM-VDREKMSKSLGNFFTVRDVLK-------------- 282 (461)
T ss_dssp SSEEEEECBGGGTTTHHHHHHHHHHHHSSS-CCEEEECCBCCEE-ETTBCCCGGGTCCCBHHHHHT--------------
T ss_pred CCceEEeccCccCchHHHHHHHHHHHhcCC-CCCcEEEEeeEEE-ECCeEccccCCCccChhHHhh--------------
Confidence 377999999999999988888777777555 66676666 9998 589999999999999999999
Q ss_pred ccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHH
Q psy17125 845 VISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDV 924 (1281)
Q Consensus 845 ~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~ 924 (1281)
+||+|++|||+++ ++..+|++|+.+.+..+.+.+++++|+++++.. . ... |
T Consensus 283 ---------------~~g~dalR~~ll~-~~~~~~~~fs~~~l~~~~~~l~rl~n~~~~~~~-----~---~~~----d- 333 (461)
T 1li5_A 283 ---------------YYDAETVRYFLMS-GHYRSQLNYSEENLKQARAALERLYTALRGTDK-----T---VAP----A- 333 (461)
T ss_dssp ---------------TSCHHHHHHHHHS-SCTTSCEEECHHHHHHHHHHHHHHHHHHTTCCT-----T---SCC----C-
T ss_pred ---------------hCCHHHHHHHHHc-CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc-----C---CCH----H-
Confidence 9999999999998 466899999999999999999999998865411 0 011 2
Q ss_pred HHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHhhhhHHHH
Q psy17125 925 YMLKRLCEFQNTMDTLY-GEFQYARASRVLLNFVVNELSAFYFT 967 (1281)
Q Consensus 925 ~il~~l~~~~~~v~~~~-e~~~~~~ai~~i~~f~~~~l~~~Yle 967 (1281)
.+..+.+.+.++| ++|+++.|+..+++++ +. .|.|++
T Consensus 334 ----~l~~~~~~~~~am~dd~n~~~Al~~l~~l~-~~-~N~~~~ 371 (461)
T 1li5_A 334 ----GGEAFEARFIEAMDDDFNTPEAYSVLFDMA-RE-VNRLKA 371 (461)
T ss_dssp ----SCHHHHHHHHHHHHBTSCHHHHHHHHHHHH-HH-HHHHHH
T ss_pred ----HHHHHHHHHHHHHHhccCHHHHHHHHHHHH-HH-HHHHHh
Confidence 3567788899999 8999999999999999 44 477765
No 24
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.97 E-value=8.4e-33 Score=356.46 Aligned_cols=133 Identities=25% Similarity=0.489 Sum_probs=124.7
Q ss_pred Cccccceec--cCC---CccCCCcccCCCCCCCCCCCchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEcc
Q psy17125 1095 SSFCHFKVY--HHL---NLITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKA 1168 (1281)
Q Consensus 1095 ~~~~d~~~~--~~~---~~i~~~G~~~~~~~~~~~g~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~~ 1168 (1281)
|++.||+++ |+| ++||++|+|+++ + |+||++++||++|+.+|.+.|++ +.++++|+||+|||||+|||+|+
T Consensus 324 h~~~D~~~~~~~~l~~~~~id~~G~~~~~-~--~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~ 400 (821)
T 1ile_A 324 FGAEDLETARVYGLPLLKTVDEEGKLLVE-P--FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYA 400 (821)
T ss_dssp SCHHHHHHHHHTTCCCCCCBCTTSBBCSG-G--GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEE
T ss_pred CCHHHHHHHHHcCCCcceeECCCCcCccc-C--cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEe
Confidence 888899887 665 569999999987 4 99999999999999999999975 89999999999999999999999
Q ss_pred cceecccccccHHHHHHhhcCceeeccccH-HHHHHHHccCCceeeecccccCceecEEEeCC
Q psy17125 1169 SQQWFIDTERIKPEALACLEGVNFVPESAK-KSLRDQIAQRPYWCISRQRVWGVPIPVFYDGD 1230 (1281)
Q Consensus 1169 ~~qwf~~~~~~~~~~~~~~~~~~~~P~~~~-~~~~~~~~~~~dWciSRqr~wG~~iP~~~~~~ 1230 (1281)
++|||++++++++++++++++++|+|++.+ +++.+||++++||||||||+||||||+|+|++
T Consensus 401 ~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~ 463 (821)
T 1ile_A 401 TESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQA 463 (821)
T ss_dssp CCEEEECGGGGHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESS
T ss_pred cchhhhchHHHHHHHHHHhcCeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecC
Confidence 999999999999999999999999999994 69999999999999999999999999999975
No 25
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.96 E-value=1.7e-31 Score=287.87 Aligned_cols=156 Identities=21% Similarity=0.326 Sum_probs=132.8
Q ss_pred ccceeEEeeccccCCCcccccccCCccccceecccCceE------EeehhhHHhHHhhccCCeeEeccccccccCCcccc
Q psy17125 454 TDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANV------IVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYI 527 (1281)
Q Consensus 454 ~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~------i~a~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~ 527 (1281)
+...++||||||||||||+||||||+|+|+.....+..+ ++++++++.+.+..+.+..++.+++|. |.|.++.
T Consensus 36 ~~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~G~-l~G~~~~ 114 (219)
T 3o0a_A 36 KRIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRERTMEEDKEGV-FLGVYAT 114 (219)
T ss_dssp SEEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCCHHHHHSCSSCCEE-EEEEEEE
T ss_pred CCCEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhHHHHHHHHHHHHhhccccceeEEEeeeE-EcCCEEE
Confidence 447899999999999999999999999999887654433 678888888776654433334788998 9999999
Q ss_pred cCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCeecccCC-------CCccCCCC----CCCCCCc
Q psy17125 528 HPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITN-------QGKYSPDA----GPGLEGL 596 (1281)
Q Consensus 528 hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid~-------~G~~~~~~----~~~~~G~ 596 (1281)
|||+++. +||+.++||++++|||+||+|||||++||++|++||||++++|+. +|.|+.+. .++|.|+
T Consensus 115 ~Pl~~~~--iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~Lpi~~vi~~~~~~~~~~g~ft~~g~~~~~~~~~Gl 192 (219)
T 3o0a_A 115 NPANGEK--IPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGL 192 (219)
T ss_dssp CTTTCCE--EEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSCCCTTTCCCCSCCEECSCGGGTTC
T ss_pred CCCCCCe--eeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCCCceeeeCCccccccccccccccceEecCCCCCCC
Confidence 9999865 999999999999999999999999999999999999999999997 46665431 2579999
Q ss_pred eeccccchhHHhhhccc
Q psy17125 597 NILGDGKDQVLHLVEPD 613 (1281)
Q Consensus 597 ~v~~~~~~~v~~~L~~~ 613 (1281)
.++ +|++.|++.|++.
T Consensus 193 ~~~-eA~~~Ii~~L~~~ 208 (219)
T 3o0a_A 193 DSE-TAKRKITEWLQDR 208 (219)
T ss_dssp BHH-HHHHHHHHHHHHT
T ss_pred CHH-HHHHHHHHHHHHC
Confidence 996 7999999999973
No 26
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=99.96 E-value=6.5e-30 Score=259.16 Aligned_cols=131 Identities=21% Similarity=0.273 Sum_probs=116.3
Q ss_pred CCcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEeehhhHHhHHhhccCCee
Q psy17125 432 ISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKWTFQTDID 511 (1281)
Q Consensus 432 ~s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~ 511 (1281)
.+++++|+|++ +. +.+++||||||||||||+||||||+++.
T Consensus 3 ~~~~~~v~F~~-~~---------~~~l~i~TTrP~Tl~g~~aiav~P~~~~----------------------------- 43 (147)
T 1wka_A 3 PGKLYTLRYEV-EG---------GGFIEIATVRPETVFADQAIAVHPEDER----------------------------- 43 (147)
T ss_dssp -CEEEEEEEEB-TT---------SCEEEEEESCGGGGGGCCEEEECTTCTT-----------------------------
T ss_pred cceEEEEEEEC-CC---------CcEEEEEECCceecccceEEEECCCCch-----------------------------
Confidence 46788999988 32 3579999999999999999999999752
Q ss_pred EeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCeecccCCCCccCCCCCC
Q psy17125 512 VVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGP 591 (1281)
Q Consensus 512 ~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid~~G~~~~~~~~ 591 (1281)
+++|.|+++.||+++++ +||+.++||++++|||+||++||||++||++|++||||++++||++|+| ++++
T Consensus 44 ------~~~l~g~~~~~P~~~~~--ipI~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~id~~G~~--~~~~ 113 (147)
T 1wka_A 44 ------YRHLLGKRARIPLTEVW--IPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRM--EGER 113 (147)
T ss_dssp ------TGGGTTCEEECTTSSCE--EEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCSBCTTSBB--CSTT
T ss_pred ------HHHhcCCEEECCCCCCe--eEEEEeCccccCCCCCcEEEccCCCHHHHHHHHHcCCCcceEECCCCEE--cCCC
Confidence 24688999999998765 9999999999999999999999999999999999999999999999999 4443
Q ss_pred ---CCCCceeccccchhHHhhhcc
Q psy17125 592 ---GLEGLNILGDGKDQVLHLVEP 612 (1281)
Q Consensus 592 ---~~~G~~v~~~~~~~v~~~L~~ 612 (1281)
.|.|+.++ +|++.|++.|++
T Consensus 114 ~~~~~~Gl~~~-~A~~~Ii~~L~~ 136 (147)
T 1wka_A 114 VPEALRGLDRF-EARRKAVELFRE 136 (147)
T ss_dssp SCGGGTTSBHH-HHHHHHHHHHHH
T ss_pred cccccCCcCHH-HHHHHHHHHHHH
Confidence 29999997 799999999987
No 27
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.96 E-value=4.1e-30 Score=284.78 Aligned_cols=169 Identities=16% Similarity=0.189 Sum_probs=137.8
Q ss_pred ccceeEEeeccccCCCcccccccCCccccceecccCceEEeehhhHHhHHhhcc-----CCeeEeccccccccCCccccc
Q psy17125 454 TDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKWTFQ-----TDIDVVCDFPGQYLQDITYIH 528 (1281)
Q Consensus 454 ~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~-----~~~~~~~~~~G~~L~g~~~~h 528 (1281)
.+.+++||||||||||||+|+||||+++|+.+++.+..++++.++.+.+....+ .+.+++.+++|.+|.|.+++|
T Consensus 31 ~~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~ 110 (261)
T 2wfg_A 31 NKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDA 110 (261)
T ss_dssp SEEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHHTTTTCSSSTTCCCCSEEEEHHHHTTCEEEC
T ss_pred CCCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHHHHHhhhhcccccEEEEEEecccccCCEEEC
Confidence 457899999999999999999999999999998877788888888777665443 245677889999999999999
Q ss_pred CCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHH-------cC-------CCeecccCC--CCcc-------
Q psy17125 529 PINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALA-------EK-------IPVLNLITN--QGKY------- 585 (1281)
Q Consensus 529 Pl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~-------~~-------lpi~~vid~--~G~~------- 585 (1281)
|++..+ .+||++++||++++|||+||+|||||++||++|++ || ||++++|+. +|.+
T Consensus 111 Pl~~~~-~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~ 189 (261)
T 2wfg_A 111 PYAVNK-NLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVN 189 (261)
T ss_dssp TTCSSC-SEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHHH
T ss_pred CCCCCc-eeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccCCceeEEcCcccCccchhhhhc
Confidence 998432 29999999999999999999999999999999999 99 899999987 3332
Q ss_pred --------------------------CCC-CCCCCCCceeccccchhHHhhhcc--cccccccccccc
Q psy17125 586 --------------------------SPD-AGPGLEGLNILGDGKDQVLHLVEP--DVLWTENYQHSY 624 (1281)
Q Consensus 586 --------------------------~~~-~~~~~~G~~v~~~~~~~v~~~L~~--~~~~~~~~~~~~ 624 (1281)
+.. ..++|.|+.+. +|++.|++.|++ .++....+.|+.
T Consensus 190 ~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~-eA~~~Ii~~L~~~G~~~~~~~~~h~~ 256 (261)
T 2wfg_A 190 DLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVE-DAKPKVKQDLIDEGLAFVYNEPELEH 256 (261)
T ss_dssp HTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHH-HHHHHHHHHHHHTTSEEEECC-----
T ss_pred cccccccchhhhhhhhhhhhhhcccccceEeccccCCeEHH-HHHHHHHHHHHHCCCeeeeeeeeecc
Confidence 111 02469999997 799999999998 355556666664
No 28
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.96 E-value=5.4e-30 Score=273.16 Aligned_cols=164 Identities=16% Similarity=0.210 Sum_probs=130.3
Q ss_pred CcceeehhhccCCccccccCcccceeEEeeccccCCCcccccccCCccccceecccCceEEeehhhHHhHHh----hccC
Q psy17125 433 SKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKW----TFQT 508 (1281)
Q Consensus 433 s~si~v~~~~~~~~~~~~~~~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~----~~~~ 508 (1281)
.++++|+|++.+ .+.+++||||||||||||+||||||+++|+.....+. ++++.+.+ ....
T Consensus 10 ~~g~~v~F~~~~---------~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~~------~~~~~~~~~~~~~~~~ 74 (196)
T 2ajg_A 10 GEGVEITFNVND---------YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENN------PELAAFIDECRNTKVA 74 (196)
T ss_dssp -CEEEEEEEBTT---------CSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTTC------HHHHHHHHHHHHCCCC
T ss_pred CceEEEEEEeCC---------CCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCCH------HHHHHHHHHhhccccc
Confidence 457788888743 2468999999999999999999999999998754321 23333332 2222
Q ss_pred CeeEeccccccccCCcccccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHHcCCCeecccC--------
Q psy17125 509 DIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLIT-------- 580 (1281)
Q Consensus 509 ~~~~~~~~~G~~L~g~~~~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~lpi~~vid-------- 580 (1281)
+.+++...+|..|.|+++.||+++.+ +||+.++||++++|||+||+|||||++||++|++||||++++|+
T Consensus 75 ~~~~~~~~k~g~l~G~~~~~P~~~~~--ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d 152 (196)
T 2ajg_A 75 EAEMATMEKKGVDTGFKAVHPLTGEE--IPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPD 152 (196)
T ss_dssp GGGGGGSCCCEEEEEEEEECTTTCCE--EEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCC
T ss_pred ceEEEeeeeCCEEcCCEEECCCCCCe--eEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccc
Confidence 34445444555899999999998765 99999999999999999999999999999999999999999996
Q ss_pred -CCCccCCCC----CCCCCCceeccccchhHHhhhcccc
Q psy17125 581 -NQGKYSPDA----GPGLEGLNILGDGKDQVLHLVEPDV 614 (1281)
Q Consensus 581 -~~G~~~~~~----~~~~~G~~v~~~~~~~v~~~L~~~~ 614 (1281)
.+|+|+.+. .++|.|+.+. +|++.|++.|++..
T Consensus 153 ~~~g~y~~~g~~~ns~~~~Gl~v~-eA~~~Ii~~L~~~g 190 (196)
T 2ajg_A 153 LSQQALTEKGVLFNSGEFNGLDHE-AAFNAIADKLTAMG 190 (196)
T ss_dssp CSSSCCCSCCCBCSSGGGTTCCHH-HHHHHHHHHHHHTT
T ss_pred cccccccCCceEecCcccCCeEHH-HHHHHHHHHHHHCC
Confidence 477777643 1469999997 79999999998743
No 29
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.6e-29 Score=277.59 Aligned_cols=157 Identities=18% Similarity=0.246 Sum_probs=133.3
Q ss_pred cccceeEEeeccccCCCcccccccCCccccceecc-cCceEEeehhhHHhHHhhcc----CCeeEeccccccccCCcccc
Q psy17125 453 ATDLHALIWTTTPWSLPANQFIAFNPALEYSVASV-KGANVIVAKCLVENLKWTFQ----TDIDVVCDFPGQYLQDITYI 527 (1281)
Q Consensus 453 ~~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~-~~~~~i~a~~~~~~~~~~~~----~~~~~~~~~~G~~L~g~~~~ 527 (1281)
.++.+++||||||||||||+|+||||+|+|+.++. +++.||+++.+.+.+..+.. .+.+++.+++|.+|.|.+++
T Consensus 27 ~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~ 106 (252)
T 2wfd_A 27 GKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLS 106 (252)
T ss_dssp TSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTTSCEEEECHHHHHHHHTTTSSSSTTCCCEEEECCHHHHTTCEEE
T ss_pred CCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecCCcEEEEhhhhHHHHHHHHhhccCcccEEEEEEEcccccCCEEE
Confidence 34689999999999999999999999999999887 66789999988887665431 25677899999999999999
Q ss_pred cCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHH----------HHHHcCCC--------eecccCC--------
Q psy17125 528 HPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFL----------LALAEKIP--------VLNLITN-------- 581 (1281)
Q Consensus 528 hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~----------~~~~~~lp--------i~~vid~-------- 581 (1281)
||+++.+ .+||++++||++++|||+||+|||||++||+ |+++|||| ++++|+.
T Consensus 107 ~Pl~~~~-~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~~~~~~~~~~~~vI~~~~~g~~~~ 185 (252)
T 2wfd_A 107 APLTSYK-VIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSA 185 (252)
T ss_dssp CSSCSSS-CEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCCGGGTTTCCCCCCEEBTTTBSSHH
T ss_pred cCCCCCc-eeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCCchhccccCceeEEecCcccccch
Confidence 9998732 2999999999999999999999999999999 68899998 5666643
Q ss_pred -------------------------------CCccCCCCCCCCCCceeccccchhHHhhhcccc
Q psy17125 582 -------------------------------QGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDV 614 (1281)
Q Consensus 582 -------------------------------~G~~~~~~~~~~~G~~v~~~~~~~v~~~L~~~~ 614 (1281)
+|+|+ . ++|.|+.+. +|++.|++.|++..
T Consensus 186 ~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~--~-~~~~Gl~v~-eA~~~Ii~~L~~~g 245 (252)
T 2wfd_A 186 VTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML--V-DGFKGQKVQ-DVKKTIQKKMIDAG 245 (252)
T ss_dssp HHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC--S-TTSTTCBHH-HHHHHHHHHHHHTT
T ss_pred hhhhhhccccCcchhhhhhhhhhhhccccccCceEe--e-eccCCeEHH-HHHHHHHHHHHHCC
Confidence 36665 3 469999997 79999999998743
No 30
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.95 E-value=2.7e-30 Score=278.51 Aligned_cols=182 Identities=18% Similarity=0.246 Sum_probs=144.3
Q ss_pred cCccEEEEEEeccCcc---------ccc---cCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceE------E
Q psy17125 175 VSKSIYLKIKLNQVPA---------HLL---EGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANV------I 236 (1281)
Q Consensus 175 ~~~~~~vkf~l~~~~~---------~~~---~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~------i 236 (1281)
.|....|+|++.+... .+. .+.+..+++||||||||||||+||+|+|+++|+.+...++.+ +
T Consensus 2 kS~G~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~~ 81 (219)
T 3o0a_A 2 RSEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYS 81 (219)
T ss_dssp --CCEEEEEEEECSCGGGTGGGSCHHHHHHHHHHSEEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCHH
T ss_pred ceeEEEEEEEecCCccccccccccchhhhhcccCCCCEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhHH
Confidence 4677889999865220 000 011347899999999999999999999999999887654433 6
Q ss_pred eehhhHHhhhhhccCCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCC
Q psy17125 237 VAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKI 316 (1281)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l 316 (1281)
+++.+++.+......+..++.+++|. |.|++|+|||++ +.+||+.++||++++|||+||+|||||++||.+|++++|
T Consensus 82 ~~~~~i~~~~~~~~~~~~~~~~~~G~-l~G~~~~~Pl~~--~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~L 158 (219)
T 3o0a_A 82 DVENFVEKMKKMSTRERTMEEDKEGV-FLGVYATNPANG--EKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDL 158 (219)
T ss_dssp HHHHHHHHHHTCCHHHHHSCSSCCEE-EEEEEEECTTTC--CEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhccccceeEEEeeeE-EcCCEEECCCCC--CeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCC
Confidence 66666665443322122223788998 999999999997 789999999999999999999999999999999999999
Q ss_pred CcceeccC-------CCCcCCCC----CCCCCCccccCCCcccccccccCcccc
Q psy17125 317 PVLNLITN-------QGKYSPDA----GPGLEGLNILGDGKDQVLHLVEPDVLW 359 (1281)
Q Consensus 317 ~~~~~~~~-------~g~~~~~~----~~~~~gl~~~~~~~~~v~~l~e~~~~~ 359 (1281)
|++++|++ +|.|.+++ .+.|+||++.++++.++..|++.|++.
T Consensus 159 pi~~vi~~~~~~~~~~g~ft~~g~~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~l~ 212 (219)
T 3o0a_A 159 PIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQDRGLGE 212 (219)
T ss_dssp CCCCCEECSSCCCTTTCCCCSCCEECSCGGGTTCBHHHHHHHHHHHHHHTTSEE
T ss_pred CceeeeCCccccccccccccccceEecCCCCCCCCHHHHHHHHHHHHHHCCCee
Confidence 99999987 56666543 246899999999999999999999875
No 31
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.95 E-value=1.8e-29 Score=279.64 Aligned_cols=189 Identities=16% Similarity=0.216 Sum_probs=147.6
Q ss_pred cEEEEEEeccCcccccc---------CCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhh
Q psy17125 178 SIYLKIKLNQVPAHLLE---------GATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWT 248 (1281)
Q Consensus 178 ~~~vkf~l~~~~~~~~~---------~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~ 248 (1281)
.+.||+++.+.|..+.. +..+.+++||||||||||||+||||||+.+|+++++.++.++++++++......
T Consensus 3 y~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~~~ 82 (261)
T 2wfg_A 3 YVGIKIRLTDVAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSF 82 (261)
T ss_dssp EEEEEEEEEECCHHHHHHHHHTTCCTTTSEEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHHTT
T ss_pred eeEEEEEEecCcHHHHHHhcccccccCCCCCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHHHH
Confidence 45688888776543221 124689999999999999999999999999999998766666666555443221
Q ss_pred cc-----CCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHH-------cC-
Q psy17125 249 FQ-----TDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALA-------EK- 315 (1281)
Q Consensus 249 ~~-----~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~-------~~- 315 (1281)
.. .+++++.+++|..|.|++|+|||++. +.+||++++||++++|||+||+|||||++||.+|++ +|
T Consensus 83 ~~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~-~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi 161 (261)
T 2wfg_A 83 QNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVN-KNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGI 161 (261)
T ss_dssp TTCSSSTTCCCCSEEEEHHHHTTCEEECTTCSS-CSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTC
T ss_pred HhhhhcccccEEEEEEecccccCCEEECCCCCC-ceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCC
Confidence 11 35677889999999999999999842 579999999999999999999999999999999999 99
Q ss_pred ------CCcceeccC--CCCcC---------------------------------CC-CCCCCCCccccCCCcccccccc
Q psy17125 316 ------IPVLNLITN--QGKYS---------------------------------PD-AGPGLEGLNILGDGKDQVLHLV 353 (1281)
Q Consensus 316 ------l~~~~~~~~--~g~~~---------------------------------~~-~~~~~~gl~~~~~~~~~v~~l~ 353 (1281)
||++++|+. +|.+. .. ..+.|+|+.+.++++.++..|+
T Consensus 162 ~~~~~~L~i~~vId~~~~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~eA~~~Ii~~L~ 241 (261)
T 2wfg_A 162 EKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDLI 241 (261)
T ss_dssp CGGGCCCCCCCCEEBTTTBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHHHHHHHH
T ss_pred ccccccCCceeEEcCcccCccchhhhhccccccccchhhhhhhhhhhhhhcccccceEeccccCCeEHHHHHHHHHHHHH
Confidence 899999987 33321 11 0235899999999889999999
Q ss_pred cCcccc-cccccCCC
Q psy17125 354 EPDVLW-TENYQHSY 367 (1281)
Q Consensus 354 e~~~~~-~~~~~~~~ 367 (1281)
+.|.+. .+++.|+-
T Consensus 242 ~~G~~~~~~~~~h~~ 256 (261)
T 2wfg_A 242 DEGLAFVYNEPELEH 256 (261)
T ss_dssp HTTSEEEECC-----
T ss_pred HCCCeeeeeeeeecc
Confidence 999775 77777764
No 32
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.3e-28 Score=272.02 Aligned_cols=181 Identities=17% Similarity=0.213 Sum_probs=149.7
Q ss_pred cCccEEEEEEeccCcccccc--CCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEe-cCceEEeehhhHHhhhhhcc-
Q psy17125 175 VSKSIYLKIKLNQVPAHLLE--GATDLHALIWTTTPWSLPANQFIAFNPALEYSVASV-KGANVIVAKCLVESLKWTFQ- 250 (1281)
Q Consensus 175 ~~~~~~vkf~l~~~~~~~~~--~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~-~~~~~i~~~~~~~~~~~~~~- 250 (1281)
.+..+.|||++.+....... +..+++++||||||||||||+||+|||+++|+.++. +++.+|+++++++.+..+..
T Consensus 4 ~~e~~~ikf~v~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~~~~~i~a~~~~~~~~~~~~~ 83 (252)
T 2wfd_A 4 PQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFT 83 (252)
T ss_dssp CCEEEEEEEEEESSCCGGGGGGTTSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTTSCEEEECHHHHHHHHTTTSS
T ss_pred ceEEEEEEEEccCcchhhhhhccCCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecCCcEEEEhhhhHHHHHHHHhh
Confidence 45678899998764433221 135689999999999999999999999999999987 67899999998876544321
Q ss_pred ---CCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHH----------HHHcCCC
Q psy17125 251 ---TDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLL----------ALAEKIP 317 (1281)
Q Consensus 251 ---~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~----------~~~~~l~ 317 (1281)
.+.+++.+++|.+|.|++++|||++. +.+||++++||++++|||+||+|||||++||.+ |+++|||
T Consensus 84 ~~~~~~~~~~~~~G~~l~G~~~~~Pl~~~-~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~ 162 (252)
T 2wfd_A 84 KDNGVVPVVKELMGEEILGASLSAPLTSY-KVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIR 162 (252)
T ss_dssp SSTTCCCEEEECCHHHHTTCEEECSSCSS-SCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCC
T ss_pred ccCcccEEEEEEEcccccCCEEEcCCCCC-ceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCC
Confidence 45788999999999999999999862 479999999999999999999999999999994 7889988
Q ss_pred --------cceeccC---------------------------------------CCCcCCCCCCCCCCccccCCCccccc
Q psy17125 318 --------VLNLITN---------------------------------------QGKYSPDAGPGLEGLNILGDGKDQVL 350 (1281)
Q Consensus 318 --------~~~~~~~---------------------------------------~g~~~~~~~~~~~gl~~~~~~~~~v~ 350 (1281)
++++|+. +|.+. . +.++|+.+.++++.++.
T Consensus 163 ~~~~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~--~-~~~~Gl~v~eA~~~Ii~ 239 (252)
T 2wfd_A 163 DDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML--V-DGFKGQKVQDVKKTIQK 239 (252)
T ss_dssp GGGTTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC--S-TTSTTCBHHHHHHHHHH
T ss_pred chhccccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCceEe--e-eccCCeEHHHHHHHHHH
Confidence 4566543 35555 2 45999999999999999
Q ss_pred ccccCcccc
Q psy17125 351 HLVEPDVLW 359 (1281)
Q Consensus 351 ~l~e~~~~~ 359 (1281)
.|++.|.+.
T Consensus 240 ~L~~~g~~~ 248 (252)
T 2wfd_A 240 KMIDAGDAL 248 (252)
T ss_dssp HHHHTTSEE
T ss_pred HHHHCCCCc
Confidence 999999764
No 33
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=99.95 E-value=1.5e-28 Score=249.18 Aligned_cols=136 Identities=22% Similarity=0.238 Sum_probs=121.3
Q ss_pred cCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCce
Q psy17125 175 VSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIE 254 (1281)
Q Consensus 175 ~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 254 (1281)
.+++++|+|++ + .+.+++||||||||||||+||+|||+.+.
T Consensus 3 ~~~~~~v~F~~-~---------~~~~l~i~TTrP~Tl~g~~aiav~P~~~~----------------------------- 43 (147)
T 1wka_A 3 PGKLYTLRYEV-E---------GGGFIEIATVRPETVFADQAIAVHPEDER----------------------------- 43 (147)
T ss_dssp -CEEEEEEEEB-T---------TSCEEEEEESCGGGGGGCCEEEECTTCTT-----------------------------
T ss_pred cceEEEEEEEC-C---------CCcEEEEEECCceecccceEEEECCCCch-----------------------------
Confidence 57889999998 4 13589999999999999999999998641
Q ss_pred EeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCCCCcCCCCCC
Q psy17125 255 VVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGP 334 (1281)
Q Consensus 255 ~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~g~~~~~~~~ 334 (1281)
.+.|.|++|+|||++ +.+||++++||++++|||+||+|||||++||.+|+++|||++++++++|++ +.++
T Consensus 44 ------~~~l~g~~~~~P~~~--~~ipI~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~id~~G~~--~~~~ 113 (147)
T 1wka_A 44 ------YRHLLGKRARIPLTE--VWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRM--EGER 113 (147)
T ss_dssp ------TGGGTTCEEECTTSS--CEEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCSBCTTSBB--CSTT
T ss_pred ------HHHhcCCEEECCCCC--CeeEEEEeCccccCCCCCcEEEccCCCHHHHHHHHHcCCCcceEECCCCEE--cCCC
Confidence 135789999999986 789999999999999999999999999999999999999999999999999 4443
Q ss_pred ---CCCCccccCCCcccccccccCcccc
Q psy17125 335 ---GLEGLNILGDGKDQVLHLVEPDVLW 359 (1281)
Q Consensus 335 ---~~~gl~~~~~~~~~v~~l~e~~~~~ 359 (1281)
.++|+.+.++++.++..|++.|.+.
T Consensus 114 ~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~ 141 (147)
T 1wka_A 114 VPEALRGLDRFEARRKAVELFREAGHLV 141 (147)
T ss_dssp SCGGGTTSBHHHHHHHHHHHHHHHTCEE
T ss_pred cccccCCcCHHHHHHHHHHHHHHCCCee
Confidence 2999999999999999999999775
No 34
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.95 E-value=4.1e-28 Score=265.88 Aligned_cols=163 Identities=19% Similarity=0.216 Sum_probs=133.0
Q ss_pred ccceeEEeeccccCCCcccccccCCccccceecc-cCceEEeehhhHHhHHhhcc------CCeeEeccccccccCCccc
Q psy17125 454 TDLHALIWTTTPWSLPANQFIAFNPALEYSVASV-KGANVIVAKCLVENLKWTFQ------TDIDVVCDFPGQYLQDITY 526 (1281)
Q Consensus 454 ~~~~i~v~TT~P~Tl~~~~~i~v~p~~~y~~~~~-~~~~~i~a~~~~~~~~~~~~------~~~~~~~~~~G~~L~g~~~ 526 (1281)
++++++||||||||||||+||||||+++|+++++ .++.||+++++++++..+.. ..++++.+++|++|.|..+
T Consensus 78 ~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~ge~~IvAe~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~ 157 (311)
T 3pz6_A 78 AKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATV 157 (311)
T ss_dssp CEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEETTEEEEEEHHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEE
T ss_pred CCEEEEEEECCchhhhhheEEEECCCCcEEEEEECCCCEEEEeHHHHHHHHHhcccccccCCCcEEEEEEEhHHhcCCEE
Confidence 5688999999999999999999999999999998 57789999999999876643 2578999999999999999
Q ss_pred ccCCCccCcceeeeeCCccccCCCCceEecCCCCChhHHHHHHH-----------cC---------CCeecccCCCC--c
Q psy17125 527 IHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALA-----------EK---------IPVLNLITNQG--K 584 (1281)
Q Consensus 527 ~hPl~~~~~~ipIi~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~-----------~~---------lpi~~vid~~G--~ 584 (1281)
.|||.+.. .+||++++||++++|||+||+|||||++||+++++ +| ++++++|+..| .
T Consensus 158 ~hPl~~~~-~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~ 236 (311)
T 3pz6_A 158 RAPLSPYE-QIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGT 236 (311)
T ss_dssp ECTTCSSS-CEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBS
T ss_pred ECCCCCCC-eeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhccHHHHHHcCCchHHhccCCCeEEEEecCCCCC
Confidence 99999862 29999999999999999999999999999995555 77 48888887432 1
Q ss_pred cCC----------------------------C------CCCCCCCceeccccchhHHhhhcccccccc
Q psy17125 585 YSP----------------------------D------AGPGLEGLNILGDGKDQVLHLVEPDVLWTE 618 (1281)
Q Consensus 585 ~~~----------------------------~------~~~~~~G~~v~~~~~~~v~~~L~~~~~~~~ 618 (1281)
+.. + ....|.|+++. +|++.|++.|.+......
T Consensus 237 ~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~~g~~~G~~V~-eAk~~i~~~L~~~g~a~~ 303 (311)
T 3pz6_A 237 LSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMKMGPFAGQSVK-DCKQSCRDLLVQNNQCIV 303 (311)
T ss_dssp SHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHH-HHHHHHHHHHHHTTCEEE
T ss_pred ccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEeeeccCCeEHH-HHHHHHHHHHHHCCCceE
Confidence 100 0 01357888874 788888888876544433
No 35
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.94 E-value=1e-28 Score=263.36 Aligned_cols=168 Identities=16% Similarity=0.193 Sum_probs=134.6
Q ss_pred cCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhcc----
Q psy17125 175 VSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQ---- 250 (1281)
Q Consensus 175 ~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~---- 250 (1281)
-.++++|+|++.+ .+.+++||||||||||||+||+|||+.+|+.+...+ +.+++.+..+..
T Consensus 9 ~~~g~~v~F~~~~---------~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~------~~~~~~~~~~~~~~~~ 73 (196)
T 2ajg_A 9 MGEGVEITFNVND---------YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAEN------NPELAAFIDECRNTKV 73 (196)
T ss_dssp --CEEEEEEEBTT---------CSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTT------CHHHHHHHHHHHHCCC
T ss_pred cCceEEEEEEeCC---------CCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCC------HHHHHHHHHHhhcccc
Confidence 3678999999853 246899999999999999999999999998774322 122332222211
Q ss_pred CCceEeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceecc-------
Q psy17125 251 TDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLIT------- 323 (1281)
Q Consensus 251 ~~~~~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~------- 323 (1281)
.+.+++...+|..|.|++|+|||++ +.+||++++||++++|||+||+|||||++||.+|+++|||++++|+
T Consensus 74 ~~~~~~~~~k~g~l~G~~~~~P~~~--~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~ 151 (196)
T 2ajg_A 74 AEAEMATMEKKGVDTGFKAVHPLTG--EEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEP 151 (196)
T ss_dssp CGGGGGGSCCCEEEEEEEEECTTTC--CEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCC
T ss_pred cceEEEeeeeCCEEcCCEEECCCCC--CeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCccc
Confidence 1234444445558999999999986 7899999999999999999999999999999999999999999996
Q ss_pred --CCCCcCCCCC----CCCCCccccCCCcccccccccCcccc
Q psy17125 324 --NQGKYSPDAG----PGLEGLNILGDGKDQVLHLVEPDVLW 359 (1281)
Q Consensus 324 --~~g~~~~~~~----~~~~gl~~~~~~~~~v~~l~e~~~~~ 359 (1281)
++|+|.+++. +.|+|+.+.++++.++..|++.|.+.
T Consensus 152 d~~~g~y~~~g~~~ns~~~~Gl~v~eA~~~Ii~~L~~~g~~~ 193 (196)
T 2ajg_A 152 DLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGE 193 (196)
T ss_dssp CCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEE
T ss_pred ccccccccCCceEecCcccCCeEHHHHHHHHHHHHHHCCCce
Confidence 4788877542 34899999999999999999999764
No 36
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.94 E-value=5.2e-27 Score=257.23 Aligned_cols=116 Identities=19% Similarity=0.259 Sum_probs=106.4
Q ss_pred CCeEEEEEeCCCCcccccceEEEcCCCceEEEEe-cCceEEeehhhHHhhhhhcc------CCceEeecccCCccccccc
Q psy17125 197 TDLHALIWTTTPWSLPANQFIAFNPALEYSVASV-KGANVIVAKCLVESLKWTFQ------TDIEVVCDFPGQYLQDITY 269 (1281)
Q Consensus 197 ~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~-~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~G~~l~~~~~ 269 (1281)
.+++++||||||||||||+||||||+.+|+++++ +|+.+|+++++++++..+.. .+++++.+++|++|.|.+|
T Consensus 78 ~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~ge~~IvAe~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~ 157 (311)
T 3pz6_A 78 AKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATV 157 (311)
T ss_dssp CEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEETTEEEEEEHHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEE
T ss_pred CCEEEEEEECCchhhhhheEEEECCCCcEEEEEECCCCEEEEeHHHHHHHHHhcccccccCCCcEEEEEEEhHHhcCCEE
Confidence 5689999999999999999999999999999999 57899999999998765532 3688999999999999999
Q ss_pred ccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHH
Q psy17125 270 IHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALA 313 (1281)
Q Consensus 270 ~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~ 313 (1281)
.|||++. +.+||++++||++++|||+||+|||||++||.+|++
T Consensus 158 ~hPl~~~-~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d 200 (311)
T 3pz6_A 158 RAPLSPY-EQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKD 200 (311)
T ss_dssp ECTTCSS-SCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHH
T ss_pred ECCCCCC-CeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHH
Confidence 9999874 479999999999999999999999999999998777
No 37
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.91 E-value=1.2e-22 Score=242.94 Aligned_cols=197 Identities=15% Similarity=0.144 Sum_probs=132.3
Q ss_pred ceeeccceeeehhhHHHHHHHHhcCCCCCc-eEEeecee-eccCCC--cccccCCCccChhhhhcccccCcccccccCcc
Q psy17125 770 VYMEGMDQINGWFMSSLLTSVALKHTAPFR-NVFLHGFV-VDEKGA--KMSKSVGNVISAHDITQGAKKLPAYEKSVGNV 845 (1281)
Q Consensus 770 l~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~-~v~~hG~v-ld~~G~--KMSKS~GNvv~p~dli~g~~~~~~msks~gn~ 845 (1281)
+|+.|.||. .||.+.+....++ +..|.+ .++.||+| ++.+|+ |||||+||+|+|.++++
T Consensus 239 Iyv~G~dq~-~~f~~l~~~l~~l-G~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~--------------- 301 (464)
T 3fnr_A 239 INIWGADHH-GYIPRMKAAMEFL-GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVD--------------- 301 (464)
T ss_dssp EEEEEGGGG-GGHHHHHHHHHTT-TCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHH---------------
T ss_pred EEEecCcHH-HHHHHHHHHHHHc-CCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHh---------------
Confidence 467788888 6888754433333 444444 56889999 556775 99999999999999999
Q ss_pred cccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchH-----H----HHHHHHHHHHHHHhhcCCCCC--
Q psy17125 846 ISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQD-----D----VQKIRSSLRYLLGVLHNHSES-- 914 (1281)
Q Consensus 846 ~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~-----~----~~kl~n~~r~~~~~l~~~~~~-- 914 (1281)
++|+|++|||+++..+ .+|++|+.+.+....+ + ..|+.++++.... ..+...
T Consensus 302 --------------~~g~dalRy~~l~~~~-~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~--~~~~~~~~ 364 (464)
T 3fnr_A 302 --------------EIGSDALRYIFLSKKC-DTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGK--KIDDVMKA 364 (464)
T ss_dssp --------------HHCHHHHHHHTTSSCT-TSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTC--CTTTSTTC
T ss_pred --------------hccHHHHHHHHHhcCC-CCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc--cCCCcccc
Confidence 9999999999998865 7999999998865332 1 3455555554311 111111
Q ss_pred CCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCC-hHHHHHHHHHHHHH
Q psy17125 915 TGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSIN-GEARLSGLHTLHNI 993 (1281)
Q Consensus 915 ~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~-~~~r~~~~~~l~~~ 993 (1281)
....+...|++++.++.++.+.+.+++++++++.+++.+++++ +.++++|-+. ++..++.. ...|.. +.... +
T Consensus 365 ~~~~L~~~e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La-~~~n~fY~~~---~vl~~~~~~~~aRL~-L~~a~-v 438 (464)
T 3fnr_A 365 DLQSLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLA-ANFHKFYNEN---KVVGSANENDLLKLF-SLVAL-S 438 (464)
T ss_dssp CCTTCCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHH-HHHHHHHHHC---CCTTSTTHHHHHHHH-HHHHH-H
T ss_pred ChhhCChHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHhC---cCCCCCHHHHHHHHH-HHHHH-H
Confidence 0112344499999999999999999999999999999999998 7888877442 22222111 112222 22223 7
Q ss_pred HHHHHHHhccccC
Q psy17125 994 FHVLLRTVAPIMP 1006 (1281)
Q Consensus 994 l~~l~~lLaP~~P 1006 (1281)
|+..+.||.-=.|
T Consensus 439 L~~gL~lLGi~ap 451 (464)
T 3fnr_A 439 IKTAFSLMGIEAK 451 (464)
T ss_dssp HHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCch
Confidence 7777777765445
No 38
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.91 E-value=9.2e-23 Score=253.26 Aligned_cols=193 Identities=13% Similarity=0.125 Sum_probs=120.8
Q ss_pred eEEeeceeeccCCCcccccCCCccChhhhhccccc-C-cccccccCcccccccccccccCCC-CCchhHHHHHHHhcCCC
Q psy17125 800 NVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKK-L-PAYEKSVGNVISAHDITQGAKKLP-AYGVDVLRWWVAAHASK 876 (1281)
Q Consensus 800 ~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~-~-~~msks~gn~~~~~~~~~~~~~i~-~yGaDalR~~l~~~~~~ 876 (1281)
..+.||||+ .+|+|||||+||+|++.++++-+.. - ..+.+. +.-.+..+ .+. .+|+|++||++++..+
T Consensus 381 ~H~~~g~v~-~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~-~~~~~~~e------~~a~~vg~~aiRyf~L~~~~- 451 (592)
T 1iq0_A 381 HHLAYETVL-LEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEK-NPDHPDKE------EAARMVALGAIRFSMVKTEP- 451 (592)
T ss_dssp EEEEECCEE-ETTBCSCC----CCBHHHHHHHHHHHHHHHHHHH-CTTCSCHH------HHHHHHHHHHHHHHHHHSCT-
T ss_pred EEEEeeEEE-cCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhh-CCCCCcHH------HHHHhhcHHHHHHHHHhcCC-
Confidence 357789997 6899999999999999999982100 0 000000 00000000 000 2999999999999876
Q ss_pred CCccccCcchhccchH-HHHHHHHHHHHHHHhhcCCCCC---CCCcCcHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q psy17125 877 DPTVPIGKNILNSSQD-DVQKIRSSLRYLLGVLHNHSES---TGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRV 952 (1281)
Q Consensus 877 ~~d~~f~~~~l~~~~~-~~~kl~n~~r~~~~~l~~~~~~---~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~~~~ai~~ 952 (1281)
.+|++|+.+.+....+ ....+.++..++.+.+.+.... ........+..++..+..+...+.+++++++++.+++.
T Consensus 452 ~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~y 531 (592)
T 1iq0_A 452 KKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQY 531 (592)
T ss_dssp TSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 7999999998876544 3445555555555544332211 00112445677888999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHhhcc-----cccccCCC-hHHHHHHHHHHHHHHHHHHHHhcc
Q psy17125 953 LLNFVVNELSAFYFTLVKD-----RLYCDSIN-GEARLSGLHTLHNIFHVLLRTVAP 1003 (1281)
Q Consensus 953 i~~f~~~~l~~~Yle~~k~-----~~~~~~~~-~~~r~~~~~~l~~~l~~l~~lLaP 1003 (1281)
++++. ..++. |.+..+| ++..++.. ...|.........+|+..+.+|.-
T Consensus 532 l~~La-~~fn~-fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi 586 (592)
T 1iq0_A 532 LLDLA-ASWNA-YYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGI 586 (592)
T ss_dssp HHHHH-HHHHH-HHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HHHHH-HHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99988 56655 5566654 55443221 223444445566677777777763
No 39
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.90 E-value=6e-25 Score=286.88 Aligned_cols=110 Identities=20% Similarity=0.287 Sum_probs=100.1
Q ss_pred CcccCCCCCCCCCCCchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEc-ccceecccccc--cHHHHHHhh
Q psy17125 1112 QGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILK-ASQQWFIDTER--IKPEALACL 1187 (1281)
Q Consensus 1112 ~G~~~~~~~~~~~g~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~-~~~qwf~~~~~--~~~~~~~~~ 1187 (1281)
+|+|+ +| .|+||++++||++++.+|.+.|++ +..++.| +|+|||||+|++++ +++|||+++++ +++.+++++
T Consensus 407 ~G~~~--~g-~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~ 482 (967)
T 1wz2_A 407 KGIFK--VP-PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKAL 482 (967)
T ss_dssp SCBCC--SS-SSCSSBHHHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHH
T ss_pred CceEe--cc-CcCCcCHHHHHHHHHHHHHhCCCceEEEecCC-CceECCCCCEEEEeccCCccceecCchHHHHHHHHhh
Confidence 78888 45 599999999999999999999976 5444444 89999999999999 69999999994 899999999
Q ss_pred cCceeeccccHHHHHHHHccCCceeeecccccCceecE
Q psy17125 1188 EGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPV 1225 (1281)
Q Consensus 1188 ~~~~~~P~~~~~~~~~~~~~~~dWciSRqr~wG~~iP~ 1225 (1281)
++++|+|+++++++.+||++++||||||||+||||||+
T Consensus 483 ~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~ 520 (967)
T 1wz2_A 483 ERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPW 520 (967)
T ss_dssp TTSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTT
T ss_pred hccEeeCccccchHHHhhhcccCeeeccCCCCCccCCc
Confidence 99999999999999999999999999999999999994
No 40
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.89 E-value=1.1e-21 Score=244.07 Aligned_cols=196 Identities=13% Similarity=0.065 Sum_probs=122.4
Q ss_pred eEEeeceeeccCCCcccccCC--CccChhhhhccccc--CcccccccCcccccccccccccCCCCCchhHHHHHHHhcCC
Q psy17125 800 NVFLHGFVVDEKGAKMSKSVG--NVISAHDITQGAKK--LPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHAS 875 (1281)
Q Consensus 800 ~v~~hG~vld~~G~KMSKS~G--Nvv~p~dli~g~~~--~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~ 875 (1281)
.++.||+|. .+|.|||||+| |+|++.++++-... ...|.+...+ .+..+....+ ..+|+|++||++++..+
T Consensus 411 ~h~~~g~V~-~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~-~~~~~~~~~a---~~vg~~AvRy~~L~~~~ 485 (629)
T 2zue_A 411 YHLAYEHVE-RPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPA-LSDEEKAEVA---EKVGIGAIRYNLIKYSP 485 (629)
T ss_dssp EEEEECCEE-BTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTT-SCHHHHHHHH---HHHHHHHHHHHHHSSCT
T ss_pred EEEEeeeEE-cCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcc-cchhhHHHHH---HhcChhHhhHHHHhcCC
Confidence 468899998 78899999999 99999999982100 0011111001 1110000000 03999999999999876
Q ss_pred CCCccccCcchhccchH--------HHHHHHHHHHHHHHhhcCC------CCCCCCcCcHHHHHHHHHHHHHHHHHHHHH
Q psy17125 876 KDPTVPIGKNILNSSQD--------DVQKIRSSLRYLLGVLHNH------SESTGSISRYVDVYMLKRLCEFQNTMDTLY 941 (1281)
Q Consensus 876 ~~~d~~f~~~~l~~~~~--------~~~kl~n~~r~~~~~l~~~------~~~~~~~~~~~d~~il~~l~~~~~~v~~~~ 941 (1281)
.+|++|+.+.+..... ...|+.+.++......... ...........+..++..+..+...+.+++
T Consensus 486 -~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~ 564 (629)
T 2zue_A 486 -DKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAG 564 (629)
T ss_dssp -TSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988764322 2355555555432110000 000001124567788999999999999999
Q ss_pred hhccHHHHHHHHHHHHHHhhhhHHHHhhcccccccCCC-hHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17125 942 GEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSIN-GEARLSGLHTLHNIFHVLLRTVAPIM 1005 (1281)
Q Consensus 942 e~~~~~~ai~~i~~f~~~~l~~~Yle~~k~~~~~~~~~-~~~r~~~~~~l~~~l~~l~~lLaP~~ 1005 (1281)
++++++.+++.++++. ..++.+|-+ + ++..++.. ...|.........+|...+.||.-=.
T Consensus 565 ~~~~p~~l~~yl~~La-~~fn~fy~~-~--~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~a 625 (629)
T 2zue_A 565 KDVKPHLIAWFANELA-SLFNKFYMD-H--PVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEA 625 (629)
T ss_dssp HTTCTHHHHHHHHHHH-HHHHHHHHH-C--CSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HhCCHHHHHHHHHHHH-HHHHHHHHh-c--cccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999998 777777633 3 34333221 22344444566677777777776333
No 41
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.88 E-value=4.4e-23 Score=266.50 Aligned_cols=114 Identities=19% Similarity=0.273 Sum_probs=103.1
Q ss_pred CcccCCCCCCCCCCCchhccchHHHHhhccCCce-eeeeeeeccCccccCCCcEEEc-ccceecccccc--cHHHHHHhh
Q psy17125 1112 QGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILK-ASQQWFIDTER--IKPEALACL 1187 (1281)
Q Consensus 1112 ~G~~~~~~~~~~~g~~~~~~~~~~v~~l~~~~~l-~~e~~~h~~p~~~R~~~pv~~~-~~~qwf~~~~~--~~~~~~~~~ 1187 (1281)
+|+|+ +| .|+||.+++|++.++.+|.+.|++ +..++.| +|+|||||+||+++ +++|||+++++ +++.+++++
T Consensus 407 ~G~~~--~g-~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~ 482 (810)
T 1wkb_A 407 KGIFK--VP-PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKAL 482 (810)
T ss_dssp SCEEC--SG-GGTTEEHHHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHH
T ss_pred CceEe--cc-CcCCeEHHHhHHHHHHHHHhCCCeeeEEecCC-CCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhh
Confidence 68887 45 599999999999999999999976 5666655 79999999999999 79999999996 999999999
Q ss_pred cCceeeccccHHHHHHHHccCCceeeecccccCceec---EEEeC
Q psy17125 1188 EGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIP---VFYDG 1229 (1281)
Q Consensus 1188 ~~~~~~P~~~~~~~~~~~~~~~dWciSRqr~wG~~iP---~~~~~ 1229 (1281)
++++|+|+++++++.+|+++++||||||||+||+||| .|.++
T Consensus 483 ~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~ 527 (810)
T 1wkb_A 483 ERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIE 527 (810)
T ss_dssp HTSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEEC
T ss_pred cccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecc
Confidence 9999999999999999999999999999999999999 56654
No 42
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.84 E-value=1.1e-22 Score=261.64 Aligned_cols=172 Identities=17% Similarity=0.237 Sum_probs=132.7
Q ss_pred cCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhccCCce
Q psy17125 175 VSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIE 254 (1281)
Q Consensus 175 ~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 254 (1281)
.+.+++|+|++.+ .+.+++||||||||||||+||+|||+.+|+...+.++.....+..++..+.+...+-+
T Consensus 226 ~s~g~~v~f~~~~---------~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (878)
T 2v0c_A 226 RSEGAEILFPVEG---------KEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQ 296 (878)
T ss_dssp EEEEEEEEEEBTT---------SSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHH
T ss_pred cccCceEEEEecC---------CCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhh
Confidence 3467899999853 3468999999999999999999999999987654443222222222221111100001
Q ss_pred E-eecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCC--------
Q psy17125 255 V-VCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQ-------- 325 (1281)
Q Consensus 255 ~-~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~-------- 325 (1281)
+ ..+++|. +.|..++||+++ +.+||+.++||++++|||+||+|||||++||.+|+++|||++++|+++
T Consensus 297 ~~~~~~~G~-~~g~~~~~P~~~--~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~ 373 (878)
T 2v0c_A 297 AEGREKTGV-FLGAYALNPATG--ERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPL 373 (878)
T ss_dssp CSSSCCCCE-EEEEEEECTTTC--CEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSC
T ss_pred hccceeeeE-ecCcEEECCCCC--CEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccc
Confidence 1 4577888 889999999987 789999999999999999999999999999999999999999999853
Q ss_pred -CCcCCCC----CCCCCCccccCCCcccccccccCccc
Q psy17125 326 -GKYSPDA----GPGLEGLNILGDGKDQVLHLVEPDVL 358 (1281)
Q Consensus 326 -g~~~~~~----~~~~~gl~~~~~~~~~v~~l~e~~~~ 358 (1281)
|.|.+++ .+.|+||.+.++++.++..|++.|+.
T Consensus 374 ~~~~~~~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~ 411 (878)
T 2v0c_A 374 ERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLG 411 (878)
T ss_dssp SSCCCSCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSE
T ss_pred cccccCCeeEecCCCCCCcCHHHHHHHHHHHHHHCCCC
Confidence 4555432 23589999999999999999999974
No 43
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.82 E-value=3.3e-21 Score=245.91 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=125.3
Q ss_pred cCccEEEEEEeccCccccccCCCCeEEEEEeCCCCcccccceEEEcCCCceEEEEecCceEEeehhhHHhhhhhcc--C-
Q psy17125 175 VSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQ--T- 251 (1281)
Q Consensus 175 ~~~~~~vkf~l~~~~~~~~~~~~~~~~~i~Tt~P~tl~~~~ai~v~p~~~Y~~~~~~~~~~i~~~~~~~~~~~~~~--~- 251 (1281)
.|.+++|+|++.+ .+.+++|||||||||+|++||+|||+++|+...+.++ ..++.+..+.. .
T Consensus 246 ~s~g~~v~f~~~~---------~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~------~~~~~~~~~~~~~~~ 310 (880)
T 4arc_A 246 RSEGVEITFNVND---------YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENN------PELAAFIDECRNTKV 310 (880)
T ss_dssp EEEEEEEEEEETT---------CSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGC------HHHHHHHTC------
T ss_pred cccceEEEEEecC---------CCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcCh------HHHHHHHHHHhccCc
Confidence 4678899999853 2458999999999999999999999999876543322 11222111111 0
Q ss_pred -Cce-EeecccCCcccccccccCCcccCcceeEeeCCceecCCCCceEEccCCCChhhHHHHHHcCCCcceeccCC----
Q psy17125 252 -DIE-VVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQ---- 325 (1281)
Q Consensus 252 -~~~-~~~~~~G~~l~~~~~~~P~~~~~~~~~~~~~~~V~~~~GTGiV~~~P~h~~~d~~~~~~~~l~~~~~~~~~---- 325 (1281)
+.. ...+.+|. +.|..++||+++ +.+||+.++||++++|||+||+|||||++||.+|+++|||++++|++.
T Consensus 311 ~~~~~~~~~~~g~-~~g~~~~~P~~~--~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~ 387 (880)
T 4arc_A 311 AEAEMATMEKKGV-DTGFKAVHPLTG--EEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSE 387 (880)
T ss_dssp ----------CEE-EEEEEEECTTTC--CEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCC
T ss_pred hhhhhccceeecc-ccCcEEecCCCC--CEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccc
Confidence 001 11255665 578999999997 799999999999999999999999999999999999999999998642
Q ss_pred -----CCcCCCC----CCCCCCccccCCCcccccccccCcccc
Q psy17125 326 -----GKYSPDA----GPGLEGLNILGDGKDQVLHLVEPDVLW 359 (1281)
Q Consensus 326 -----g~~~~~~----~~~~~gl~~~~~~~~~v~~l~e~~~~~ 359 (1281)
+.|.+++ ...|+||.+.++++.++..|++.|++.
T Consensus 388 ~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~ii~~L~~~g~~~ 430 (880)
T 4arc_A 388 PDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGE 430 (880)
T ss_dssp CCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEE
T ss_pred cccccccccCCceeecCcccCCCCHHHHHHHHHHHHHHcCCcc
Confidence 2233221 235899999999999999999999764
No 44
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.80 E-value=6.5e-20 Score=225.11 Aligned_cols=124 Identities=13% Similarity=0.103 Sum_probs=96.7
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCC--chH---HHHHHHh-cccCCCHHHH---
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHG--LPI---ELKAITS-KDKLLSPLDI--- 89 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G--~pi---e~~a~~~-~~~~~~~~e~--- 89 (1281)
++.|++.+.|+|||.|||||+|++++.|+++||++++|++|.++.++|++| .+| ..++.++ .| .++.++
T Consensus 19 ~~~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G--~~~~~~p~p 96 (523)
T 1irx_A 19 KEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLG--MPISEVPDP 96 (523)
T ss_dssp CSEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTT--SBGGGSCCT
T ss_pred CCeEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcC--CCcccCCcc
Confidence 345667678999999999999999999999999999999999999999999 555 3333333 12 222110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHH-HHHHHHHHHHhCC-cEEee
Q psy17125 90 RKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVK-NQLCQFYNLYKQD-YIYRD 149 (1281)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~-~v~~~f~~L~~~G-~iy~~ 149 (1281)
...|+++++++.+.++++|++|||.+| .+++++. |.+ .+++++.+|.++| .||+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~Lgi~~D----~~~~se~-~~~g~~~~~i~~L~~~G~~iy~~ 153 (523)
T 1irx_A 97 WGCHESYAEHFMRKFEEEVEKLGIEVD----LLYASEL-YKRGEYSEEIRLAFEKRDKIMEI 153 (523)
T ss_dssp TSSSSSHHHHHHHHHHHHHHTTTCCCE----EEEHHHH-HHTTTTHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCce----EEechhh-ccchHHHHHHHHHHHchHHHHHH
Confidence 013577899999999999999999776 3456544 666 8899999999999 77753
No 45
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.64 E-value=1.3e-14 Score=179.28 Aligned_cols=134 Identities=14% Similarity=0.034 Sum_probs=102.5
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHH--Hhccc-------------
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAI--TSKDK------------- 82 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~--~~~~~------------- 82 (1281)
.++..|-.-=|||+|++|+||+|+.+++|+++|+++..||+|.+...+++.|.++..-+. ++.|.
T Consensus 142 ~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~ 221 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLF 221 (607)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHH
T ss_pred CCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHH
Confidence 356888889999999999999999999999999999999999999999999999743221 11110
Q ss_pred ---------------------CC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHcCceeccCCCeeecCCHH
Q psy17125 83 ---------------------LL-------------SPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKE 128 (1281)
Q Consensus 83 ---------------------~~-------------~~~e~~~~~~~~~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~ 128 (1281)
.+ ...+..+.-+.+++.+++.+++++++|||.+| .+..+++ .
T Consensus 222 ~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD---~~~~ES~-~ 297 (607)
T 1f7u_A 222 DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYD---VYSGESQ-V 297 (607)
T ss_dssp HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCS---EEEEGGG-C
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcce---eecCcch-h
Confidence 00 00111222356788889999999999999997 4555553 2
Q ss_pred HHHHHHHHHHHHHhCCcEEeeCcceee
Q psy17125 129 YVKNQLCQFYNLYKQDYIYRDLKPVYW 155 (1281)
Q Consensus 129 ~~~~v~~~f~~L~~~G~iy~~~~~v~w 155 (1281)
+...+..++..|.++|++|+.++.+++
T Consensus 298 ~~~~~~~vi~~L~~kG~~ye~dGa~~~ 324 (607)
T 1f7u_A 298 SKESMLKAIDLFKEKGLTHEDKGAVLI 324 (607)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETTEEEE
T ss_pred hhhHHHHHHHHHHhCCCEEEECCcEEE
Confidence 236889999999999999987776644
No 46
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.60 E-value=2.8e-16 Score=199.19 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=71.9
Q ss_pred eeeccCccccCCCcEEEcccceecccccccHHHHHHhhcCceeeccccHHHHHHHH-ccCCceeeecccccCceecEEEe
Q psy17125 1150 YQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQI-AQRPYWCISRQRVWGVPIPVFYD 1228 (1281)
Q Consensus 1150 ~~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~-~~~~dWciSRqr~wG~~iP~~~~ 1228 (1281)
..+.+|+|||||+|+|++.++|||++++++++.+++.+++..| |++.++++.+|| ++++|||||||++||+|||+|++
T Consensus 166 ~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~w-p~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~ 244 (722)
T 1rqg_A 166 EILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPW-KPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEE 244 (722)
T ss_dssp TSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCC-CHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCS
T ss_pred hhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHCCCcccceeccccCccccCcccc
Confidence 3567899999999999999999999999999999999988886 999999999999 89999999999999999999764
No 47
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.40 E-value=9.6e-14 Score=170.32 Aligned_cols=70 Identities=23% Similarity=0.410 Sum_probs=34.8
Q ss_pred CccccCCCcEEEcccceecccccccHHHHHHhhcC-cee-eccccHHHHHHHHc-cCCceeeec--cc-ccCceec
Q psy17125 1155 PYDWRTKKPVILKASQQWFIDTERIKPEALACLEG-VNF-VPESAKKSLRDQIA-QRPYWCISR--QR-VWGVPIP 1224 (1281)
Q Consensus 1155 p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~-~~~-~P~~~~~~~~~~~~-~~~dWciSR--qr-~wG~~iP 1224 (1281)
++|||||+|++++.++|||++++++++.+++.+++ ..| .|++.++++.+|++ +++|||||| || +||+|||
T Consensus 142 g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP 217 (500)
T 2d5b_A 142 GLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLP 217 (500)
T ss_dssp TBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEET
T ss_pred CcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccC
Confidence 34555555555555555555555555555555543 222 35555555555553 234555555 44 3555555
No 48
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.40 E-value=1.7e-13 Score=169.84 Aligned_cols=76 Identities=16% Similarity=0.323 Sum_probs=70.4
Q ss_pred eeccCccccCCCcEEEcccceecccccccHHHHHHhhc--CceeeccccHHHHHHHHcc-CCceeeecccc----cCcee
Q psy17125 1151 QHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLE--GVNFVPESAKKSLRDQIAQ-RPYWCISRQRV----WGVPI 1223 (1281)
Q Consensus 1151 ~h~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~--~~~~~P~~~~~~~~~~~~~-~~dWciSRqr~----wG~~i 1223 (1281)
-+.+++|||||+|||++.++|||++++++++++++.++ ...+.|++.++.+.+|+++ ++||||||||+ ||+||
T Consensus 153 g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipi 232 (542)
T 3u1f_A 153 GNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPV 232 (542)
T ss_dssp SCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEE
T ss_pred CccccccCCCCCcceeeccccceecchhHHHHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCcc
Confidence 36789999999999999999999999999999999886 5789999999999999998 78999999999 99999
Q ss_pred cEE
Q psy17125 1224 PVF 1226 (1281)
Q Consensus 1224 P~~ 1226 (1281)
|.+
T Consensus 233 P~~ 235 (542)
T 3u1f_A 233 PGN 235 (542)
T ss_dssp TTE
T ss_pred CCC
Confidence 954
No 49
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.37 E-value=2.1e-13 Score=168.18 Aligned_cols=95 Identities=21% Similarity=0.329 Sum_probs=76.7
Q ss_pred ccchHHHHhhccCCceeeeeeeecc-------------------Cccc-cCCCcEEEcccceecccccccHHHHHHhhcC
Q psy17125 1130 GEGKDQVLHLVEPDVLWTENYQHSY-------------------PYDW-RTKKPVILKASQQWFIDTERIKPEALACLEG 1189 (1281)
Q Consensus 1130 ~~~~~~v~~l~~~~~l~~e~~~h~~-------------------p~~~-R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~ 1189 (1281)
++-..++.+|.++|++......--| +.|+ |||+|||++.++|||++++++++++++.+++
T Consensus 111 ~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~ 190 (524)
T 2x1l_A 111 EASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEE 190 (524)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHh
Confidence 3445677888899986322111100 1477 9999999999999999999999999999973
Q ss_pred --ceeeccccHHHHHHHH-ccCCceeeeccc-ccCceec
Q psy17125 1190 --VNFVPESAKKSLRDQI-AQRPYWCISRQR-VWGVPIP 1224 (1281)
Q Consensus 1190 --~~~~P~~~~~~~~~~~-~~~~dWciSRqr-~wG~~iP 1224 (1281)
..+.|++.++++.+|+ ++++|||||||| +||+|||
T Consensus 191 ~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP 229 (524)
T 2x1l_A 191 HPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVP 229 (524)
T ss_dssp CGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEET
T ss_pred CCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCC
Confidence 3467999999999999 579999999998 5999999
No 50
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.34 E-value=5e-13 Score=164.97 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=75.7
Q ss_pred chHHHHhhccCCceeeeeeeec-------------c------CccccCCCcEEEcccceecccccccHHHHHHhhcCc--
Q psy17125 1132 GKDQVLHLVEPDVLWTENYQHS-------------Y------PYDWRTKKPVILKASQQWFIDTERIKPEALACLEGV-- 1190 (1281)
Q Consensus 1132 ~~~~v~~l~~~~~l~~e~~~h~-------------~------p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~~-- 1190 (1281)
-.+++.+|.++|++....+.-- + -+|+|||+|+|++.++|||++++++++.+++.+++.
T Consensus 126 v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~ 205 (536)
T 4dlp_A 126 SQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPG 205 (536)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCC
Confidence 3467778888887632221111 1 159999999999999999999999999999999853
Q ss_pred eeeccccHHHHHHHHc-cCCceeeeccc-ccCceec
Q psy17125 1191 NFVPESAKKSLRDQIA-QRPYWCISRQR-VWGVPIP 1224 (1281)
Q Consensus 1191 ~~~P~~~~~~~~~~~~-~~~dWciSRqr-~wG~~iP 1224 (1281)
.+.|++.++++.+|++ +++|||||||| +||+|||
T Consensus 206 ~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP 241 (536)
T 4dlp_A 206 FIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVP 241 (536)
T ss_dssp SEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCT
T ss_pred ccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCC
Confidence 4579999999999998 79999999995 7999999
No 51
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.27 E-value=1e-12 Score=161.01 Aligned_cols=104 Identities=29% Similarity=0.304 Sum_probs=94.9
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHH
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNF 96 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~ 96 (1281)
++++|+|+.|||||||.|||||+++++++|+++||+||+||+|++++||||||+||+.+|++++ .++ +++
T Consensus 3 ~~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g---~~~-------~~~ 72 (497)
T 2csx_A 3 LMKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELG---ISP-------KEL 72 (497)
T ss_dssp SSCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSS---SCH-------HHH
T ss_pred CCCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcC---CCH-------HHH
Confidence 4678999999999999999999999999999999999999999999999999999999999875 778 467
Q ss_pred HHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHHH
Q psy17125 97 ALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQ 133 (1281)
Q Consensus 97 ~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v 133 (1281)
++++++.+++++++|||++| .+++|+++.|.+.+
T Consensus 73 ~~~~~~~~~~~~~~lgi~~d---~~~~t~~~~~~~~~ 106 (497)
T 2csx_A 73 VDRNAERFKKLWEFLKIEYT---KFIRTTDPYHVKFV 106 (497)
T ss_dssp HHHHHHHHHHHHHHTTCCCS---EEEETTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcCC---CCccCCCHHHHHHH
Confidence 89999999999999999777 57889999987653
No 52
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.26 E-value=1.9e-12 Score=160.57 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=66.6
Q ss_pred ccCccccCCCcEEEcccceecccccccHHHHHHhhcCceeeccccHHHHHHHHc-cCCceeeeccc-ccCceecE
Q psy17125 1153 SYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIA-QRPYWCISRQR-VWGVPIPV 1225 (1281)
Q Consensus 1153 ~~p~~~R~~~pv~~~~~~qwf~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~-~~~dWciSRqr-~wG~~iP~ 1225 (1281)
..|+|+|||++++++.++|||++++++++.+++.+++. ++|+..++.+.+||+ +++|||||||+ |||+|||.
T Consensus 184 ~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~ 257 (560)
T 3h99_A 184 IEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSG-ALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPN 257 (560)
T ss_dssp EEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTS-CSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTT
T ss_pred cCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCC
Confidence 34889999999999999999999999999999999884 468888999999999 89999999999 99999993
No 53
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.21 E-value=3.4e-12 Score=158.04 Aligned_cols=103 Identities=23% Similarity=0.311 Sum_probs=83.8
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHH
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNF 96 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~ 96 (1281)
++++|+|+.|+|||||+|||||+|+++++|+++||+||+||+|++++|+|+||++|+.+|.+.+ .+| +++
T Consensus 24 ~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g---~~p-------~~~ 93 (564)
T 3kfl_A 24 KQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQG---VSP-------MDF 93 (564)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTT---CCH-------HHH
T ss_pred CCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcC---CCH-------HHH
Confidence 4567888888888888888888888888888888888888888888888888888888887765 677 456
Q ss_pred HHHHHHHHHHHHHHcCceeccCCCeeecCCHHHHHH
Q psy17125 97 ALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKN 132 (1281)
Q Consensus 97 ~~~~~~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~ 132 (1281)
++++++.+++++++|||++| .+++|+++.|.+.
T Consensus 94 ~~~~~~~~~~~~~~lgi~~D---~~~~t~~~~~~~~ 126 (564)
T 3kfl_A 94 TTSVSSEFKQCFQEMNYDMN---YFIRTTNPTHEKL 126 (564)
T ss_dssp HHHHHHHHHHHHHHTTCCCS---EEEETTSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCC---ccccCCCHHHHHH
Confidence 88888888888888888888 5778888877664
No 54
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.02 E-value=4.8e-06 Score=93.95 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=67.3
Q ss_pred EEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q psy17125 23 LHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETIN 102 (1281)
Q Consensus 23 i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~ 102 (1281)
++==+|.|||.|||||++++++...++| ++.+.|..-+++...+ +. ..++.+
T Consensus 7 ~~RFAPsPtG~LHiG~~rtal~n~l~Ar-----~~~g~~ilRieDtD~~------R~-----------------~~~~~~ 58 (298)
T 1nzj_A 7 IGRFAPSPSGELHFGSLIAALGSYLQAR-----ARQGRWLVRIEDIDPP------RE-----------------VPGAAE 58 (298)
T ss_dssp EEEECCCTTSCCCHHHHHHHHHHHHHHH-----HTTCEEEEEECCSCGG------GS-----------------CTTHHH
T ss_pred EEEECcCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEecCCch------hh-----------------HHHHHH
Confidence 4456899999999999999995555544 4555666666665433 11 133466
Q ss_pred HHHHHHHHcCceeccCCC-eeecCCHHHHHHHHHHHHHHHhCCcEEe
Q psy17125 103 TQKAEFESWGVLADWEHN-CYHTFDKEYVKNQLCQFYNLYKQDYIYR 148 (1281)
Q Consensus 103 ~~~~~l~~lgi~~DW~R~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 148 (1281)
.+.++|+.||+.+| . .++.+ ++.+..++++.+|.++|++|.
T Consensus 59 ~I~~dL~~LGl~~D---~~~~~qS--er~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 59 TILRQLEHYGLHWD---GDVLWQS--QRHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp HHHHHHHHTTCCCS---SCCEEGG--GCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCCCC---CCCeeee--CCHHHHHHHHHHHHHcCCccc
Confidence 78999999999877 3 34444 355788899999999999996
No 55
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.84 E-value=1.5e-05 Score=95.80 Aligned_cols=94 Identities=19% Similarity=0.133 Sum_probs=72.2
Q ss_pred EEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q psy17125 22 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETI 101 (1281)
Q Consensus 22 ~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~ 101 (1281)
+++=-||.|||.||||||+++++...+|| +|.+.+..-+|+...+ +. ..++.
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~------R~-----------------~~e~~ 148 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR------RV-----------------DPEAY 148 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG------GC-----------------CTTHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc------cc-----------------cHHHH
Confidence 56777899999999999999999766666 5666677777777543 11 22446
Q ss_pred HHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEe
Q psy17125 102 NTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYR 148 (1281)
Q Consensus 102 ~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 148 (1281)
+.+.++|+.||+..| ..++.+ +|......+..+|.++|++|.
T Consensus 149 ~~I~edL~wLGl~wd---~~~~qS--dr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 149 DMIPADLEWLGVEWD---ETVIQS--DRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp HHHHHHHHHHTCCCS---EEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCC---CCcccc--cCHHHHHHHHHHHHHcCCcee
Confidence 678999999999776 455444 577788889999999999996
No 56
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=97.80 E-value=3.5e-05 Score=92.78 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=67.8
Q ss_pred EEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q psy17125 22 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETI 101 (1281)
Q Consensus 22 ~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~ 101 (1281)
+++==+|.|||.||||||+++++...+|| +|...++.-+|+.... . .+.++.
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~-------R----------------~~~e~~ 78 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV-------K----------------EDIEYV 78 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------G----------------CCHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch-------h----------------cCHHHH
Confidence 56777999999999999999999888887 3444555556665431 1 133456
Q ss_pred HHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEe
Q psy17125 102 NTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYR 148 (1281)
Q Consensus 102 ~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 148 (1281)
+.+.++|+.||+..|-. .++.+ +|.........+|.++|++|.
T Consensus 79 ~~I~edL~wLGl~wde~--~~~qS--er~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 79 ESIKNDVEWLGFHWSGN--VRYSS--DYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp HHHHHHHHHTTCCCSSS--CEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCCCC--Ceehc--ccHHHHHHHHHHHHHCCCcee
Confidence 77899999999987633 33333 444444556679999999997
No 57
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.67 E-value=4.2e-05 Score=91.94 Aligned_cols=96 Identities=21% Similarity=0.171 Sum_probs=70.0
Q ss_pred cEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q psy17125 20 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALE 99 (1281)
Q Consensus 20 ~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~ 99 (1281)
.++++--.|+|||+|||||+|+.++.|.+||. ..|+-++. +++++.. .+ ...
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLR---ieDtD~~------------r~-----------~~~ 63 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILR---IEDTDLE------------RS-----------ERE 63 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEEC---BCCSSCC------------SG-----------GGH
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEE---EecCCcc------------cc-----------HHH
Confidence 46777789999999999999999999999998 78888777 4444421 11 123
Q ss_pred HHHHHHHHHHHcCceeccCCCe---------eecCCHHHHHHHHHHHHHHHhCCcEEe
Q psy17125 100 TINTQKAEFESWGVLADWEHNC---------YHTFDKEYVKNQLCQFYNLYKQDYIYR 148 (1281)
Q Consensus 100 ~~~~~~~~l~~lgi~~DW~R~~---------~~T~~~~~~~~v~~~f~~L~~~G~iy~ 148 (1281)
+.+.+.++|+.||+..| .. |+. .++.+...++..+|.++|.+|.
T Consensus 64 ~~~~I~~~l~wlGl~~d---e~p~~gg~~g~y~Q--S~r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 64 YEEKLMESLRWLGLLWD---EGPDVGGDHGPYRQ--SERVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp HHHHHHHHHHHHTCCCS---BBTTTBCTTCCCBG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCC---CCcccCCCCCceee--eccHHHHHHHHHHHHHCCCeeE
Confidence 34556888999998755 32 332 2455667778889999999874
No 58
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.66 E-value=5.1e-05 Score=95.26 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=70.9
Q ss_pred EEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q psy17125 22 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETI 101 (1281)
Q Consensus 22 ~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~ 101 (1281)
+++==+|.|||.||||||+++++...+|| +|...|+.-+|+...+ . . ..++.
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~-------R-----~-----------~~e~~ 118 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE-------L-----A-----------RQEYV 118 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT-------T-----C-----------CHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc-------c-----c-----------cHHHH
Confidence 56667999999999999999999777776 3455666666666432 1 1 23456
Q ss_pred HHHHHHHHHcCceeccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEe
Q psy17125 102 NTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYR 148 (1281)
Q Consensus 102 ~~~~~~l~~lgi~~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 148 (1281)
+.+.++|+.||+..|-. .++. .+|......+..+|.++|++|.
T Consensus 119 ~~IledL~wLGl~wde~--~~~q--Ser~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 119 DSIADDLKWLGLDWGEH--FYYA--SDYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HHHHHHHHHHTCCCTTC--EEEG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCCCC--cccH--hhhHHHHHHHHHHHHHCCCcEe
Confidence 77899999999987622 4443 3677777888999999999996
No 59
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.65 E-value=7.8e-05 Score=88.98 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=68.2
Q ss_pred EEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q psy17125 23 LHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETIN 102 (1281)
Q Consensus 23 i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~ 102 (1281)
.+==+|.|||.|||||+|++++...++|. ..|.-++.+=-+|. +. . ..++.+
T Consensus 27 ~~RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G~filRieDtD~----------~R-----~-----------~~~~~~ 78 (490)
T 4g6z_A 27 RTRFAPSPTGFIHLGNIRSALYPWAFARK--MKGTFVLRIEDTDV----------ER-----S-----------SQEAVD 78 (490)
T ss_dssp EEEECCCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCG----------GG-----C-----------CHHHHH
T ss_pred eEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEeCCCCc----------cc-----c-----------cHHHHH
Confidence 44557999999999999999999988885 46666655544432 11 1 234567
Q ss_pred HHHHHHHHcCceeccCCCe-eecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 103 TQKAEFESWGVLADWEHNC-YHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 103 ~~~~~l~~lgi~~DW~R~~-~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
.+.++|+.||+.+| .. |+. .++.+....++.+|.++|++|.-
T Consensus 79 ~i~~dl~wlGl~~d---~~~~~q--S~r~~~y~~~~~~Li~~G~aY~C 121 (490)
T 4g6z_A 79 AILEGMAWLGLDYD---EGPYYQ--MQRMDRYREVLAQMQEKGLVYPC 121 (490)
T ss_dssp HHHHHHHHTTCCCS---EEEEEG--GGCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCC---CCCccc--ccCHHHHHHHHHHHHHCCCEEeC
Confidence 78999999999765 32 333 35667778889999999998864
No 60
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.64 E-value=5.7e-05 Score=92.75 Aligned_cols=96 Identities=17% Similarity=0.084 Sum_probs=68.9
Q ss_pred cEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHH
Q psy17125 20 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALE 99 (1281)
Q Consensus 20 ~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~ 99 (1281)
+..+=. +|.|||+|||||+|+.++.+.+||. ..|.-++++ ++...+ .. ..+
T Consensus 129 ~v~~RF-aPsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRi---eDtD~~------------r~-----------~~~ 179 (592)
T 3al0_C 129 LVRVRF-APSPTGHLHVGGARTALFNWMFARK--EGGKFILRI---EDTDTE------------RS-----------SRE 179 (592)
T ss_dssp CCEEEE-CCCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECB---CCCCSS------------SC-----------CHH
T ss_pred eEEEEE-CCCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEe---cCcChh------------hc-----------cHH
Confidence 344444 4999999999999999999999986 567666655 333211 11 234
Q ss_pred HHHHHHHHHHHcCceeccCCCe---------eecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 100 TINTQKAEFESWGVLADWEHNC---------YHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 100 ~~~~~~~~l~~lgi~~DW~R~~---------~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
+.+.+.++|+.||+.+| .. |+.+ ++.+....+..+|.++|++|.-
T Consensus 180 ~~~~I~~dL~wlGl~~D---~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~c 233 (592)
T 3al0_C 180 YEQQILESLRWCGLDWD---EGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYYV 233 (592)
T ss_dssp HHHHHHHHHHHTTCCCS---BBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHHHcCCCCC---CCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceEe
Confidence 56678999999999765 32 4444 3346778899999999999864
No 61
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=97.46 E-value=0.00011 Score=88.22 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=64.8
Q ss_pred EcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Q psy17125 24 HDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINT 103 (1281)
Q Consensus 24 ~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~ 103 (1281)
+=-+|.|||.|||||++++++.-.+|| ++...|+.-+|+... + .+ ..++.+.
T Consensus 4 ~RFAPSPtG~lHiG~artal~n~l~Ar-----~~~G~filRieDtD~-------~-----R~-----------~~~~~~~ 55 (492)
T 2cfo_A 4 VRLAPSPTGNLHIGTARTAVFNWLYAR-----HRGGKFILRIEDTDR-------E-----RS-----------RPEYTEN 55 (492)
T ss_dssp EEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCSS-------S-----SC-----------CHHHHHH
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEeeCCc-------c-----cc-----------chHHHHH
Confidence 334799999999999999999766665 344455555566532 0 11 1344677
Q ss_pred HHHHHHHcCceeccCCC-eeecCCHHHHHHHHHHHHHHHhCCcEEe
Q psy17125 104 QKAEFESWGVLADWEHN-CYHTFDKEYVKNQLCQFYNLYKQDYIYR 148 (1281)
Q Consensus 104 ~~~~l~~lgi~~DW~R~-~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 148 (1281)
+.++|+.||+..| . .++. .++.+....+..+|.++|++|.
T Consensus 56 i~~dL~wLGl~wd---e~~~~Q--S~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 56 ILEGLQWLGLTWD---EGPYFQ--SDRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHHHTTCCCS---EEEEEG--GGCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCC---CCCccc--cCCHHHHHHHHHHHHHCCCceE
Confidence 8999999998665 3 3433 3455677788899999999997
No 62
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.15 E-value=0.00037 Score=84.59 Aligned_cols=97 Identities=15% Similarity=0.062 Sum_probs=63.9
Q ss_pred EcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Q psy17125 24 HDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINT 103 (1281)
Q Consensus 24 ~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~ 103 (1281)
+==+|.|||.||||||++.++.-.+||- ..|.-+++ +|++..+ .. ..++.+.
T Consensus 27 tRFAPsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLR---ieDtD~~------------R~-----------~~~~~~~ 78 (512)
T 4gri_A 27 VRYAPSPTGLQHIGGIRTALFNYFFAKS--CGGKFLLR---IEDTDQS------------RY-----------SPEAEND 78 (512)
T ss_dssp EEECCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEEC---BCCCCTT------------SC-----------CHHHHHH
T ss_pred EEeCcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEE---eCcCCCC------------cC-----------CHHHHHH
Confidence 3348999999999999999999888873 46654444 4554321 01 1234556
Q ss_pred HHHHHHHcCceeccCCCe----eec-CCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 104 QKAEFESWGVLADWEHNC----YHT-FDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 104 ~~~~l~~lgi~~DW~R~~----~~T-~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
+.++|+.||+.+|-. .. +.+ ...++.+.-+.+..+|.++|++|.-
T Consensus 79 I~~~L~wlGl~wDe~-p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C 128 (512)
T 4gri_A 79 LYSSLKWLGISFDEG-PVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYC 128 (512)
T ss_dssp HHHHHHHHTCCCSBB-TTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCCCCcC-CccCCCCCCccccchHHHHHHHHHHHHHcCCcccc
Confidence 789999999987732 11 001 1123344556788899999999853
No 63
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=97.02 E-value=0.0011 Score=79.68 Aligned_cols=95 Identities=17% Similarity=0.077 Sum_probs=67.7
Q ss_pred EEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q psy17125 22 ILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETI 101 (1281)
Q Consensus 22 ~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~ 101 (1281)
+++=-+|.|||.|||||+++.++.-.+||- ..|.-+++ +|+...+ . + ..++.
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filR---ieDtD~~-------R-----~-----------~~~~~ 77 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARK--EGGKFILR---IEDTDTE-------R-----S-----------SREYE 77 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHH--HTCEEEEC---BCCCCTT-------T-----C-----------CHHHH
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEE---EeeCCcc-------c-----c-----------cHHHH
Confidence 455668999999999999999998888774 45554444 4554221 0 1 23446
Q ss_pred HHHHHHHHHcCceeccCCCe---------eecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 102 NTQKAEFESWGVLADWEHNC---------YHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 102 ~~~~~~l~~lgi~~DW~R~~---------~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
+.+.++|+.||+.+| .. |+.+ ++.+..+.+..+|.++|++|.-
T Consensus 78 ~~I~~dL~wlGl~wD---e~~~~gG~~gp~~QS--er~~~y~~~~~~L~~~G~aY~c 129 (488)
T 3afh_A 78 QQILESLRWCGLDWD---EGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYYV 129 (488)
T ss_dssp HHHHHHHHHTTCCCS---BBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCC---cCCCCCCCCCCeeee--CCHHHHHHHHHHHHHcCCeEec
Confidence 678999999999765 42 4444 3446778899999999999864
No 64
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=96.97 E-value=0.00082 Score=80.32 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=65.2
Q ss_pred EcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Q psy17125 24 HDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINT 103 (1281)
Q Consensus 24 ~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~ 103 (1281)
+==+|.|||.|||||+++.++.-.+|| +..|. |..=+|++..+ + + ..++.+.
T Consensus 4 ~RFaPsPtG~LHiG~~rtal~n~l~Ar--~~~G~---filRieDtD~~------R------~-----------~~~~~~~ 55 (468)
T 1j09_A 4 TRIAPSPTGDPHVGTAYIALFNYAWAR--RNGGR---FIVRIEDTDRA------R------Y-----------VPGAEER 55 (468)
T ss_dssp EEECCCCSSSCBHHHHHHHHHHHHHHH--HTTCE---EEECBCCCCTT------S------C-----------CTTHHHH
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCE---EEEEeCcCCCc------c------c-----------ChHHHHH
Confidence 334899999999999999999988887 34554 44445555332 0 1 1234567
Q ss_pred HHHHHHHcCceeccCCCe---------eecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 104 QKAEFESWGVLADWEHNC---------YHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 104 ~~~~l~~lgi~~DW~R~~---------~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
+.++|+.||+.+| .. |+.+ ++.+.-..+..+|.++|++|.-
T Consensus 56 I~~dl~wlGl~wd---~~~~~gG~~gp~~QS--~r~~~y~~~~~~L~~~G~aY~c 105 (468)
T 1j09_A 56 ILAALKWLGLSYD---EGPDVGGPHGPYRQS--ERLPLYQKYAEELLKRGWAYRA 105 (468)
T ss_dssp HHHHHHHTTCCCS---BBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCCC---CCCCCCCCCCCeecc--CCHHHHHHHHHHHHHcCCeEEc
Confidence 7999999998755 33 3333 4556667888999999998864
No 65
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=96.92 E-value=0.00098 Score=80.02 Aligned_cols=94 Identities=16% Similarity=0.092 Sum_probs=66.7
Q ss_pred EEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Q psy17125 23 LHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETIN 102 (1281)
Q Consensus 23 i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~ 102 (1281)
.+==+|-|||.|||||+++.++.-.+|| +..|.-++++ |++..+ .+ ..++.+
T Consensus 8 r~RFAPsPTG~LHiG~~rtAL~n~l~Ar--~~gG~fiLRi---eDtD~~------------R~-----------~~~~~~ 59 (498)
T 2ja2_A 8 RVRFCPSPTGTPHVGLVRTALFNWAYAR--HTGGTFVFRI---EDTDAQ------------RD-----------SEESYL 59 (498)
T ss_dssp EEEECCCSSSSCBHHHHHHHHHHHHHHH--HHTCEEEECB---CCCCTT------------TC-----------CHHHHH
T ss_pred eEEECcCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEE---CcCCCc------------cc-----------ChHHHH
Confidence 4445799999999999999999999988 4567555543 444110 01 234456
Q ss_pred HHHHHHHHcCceeccCCC---------eeecCCHHHHHHHHHHHHHHHhCCcEEee
Q psy17125 103 TQKAEFESWGVLADWEHN---------CYHTFDKEYVKNQLCQFYNLYKQDYIYRD 149 (1281)
Q Consensus 103 ~~~~~l~~lgi~~DW~R~---------~~~T~~~~~~~~v~~~f~~L~~~G~iy~~ 149 (1281)
.+.++|+.||+.+| . .|+.+ ++.+.-+.+..+|.++|++|.-
T Consensus 60 ~I~~~L~wlGl~wD---egp~~gG~~~~~~QS--~r~~~y~~~~~~L~~~g~aY~c 110 (498)
T 2ja2_A 60 ALLDALRWLGLDWD---EGPEVGGPYGPYRQS--QRAEIYRDVLARLLAAGEAYHA 110 (498)
T ss_dssp HHHHHHHHHTCCCS---BBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCcC---CCcCcCCCCCCeeee--cCHHHHHHHHHHHHHcCCeEEe
Confidence 77999999999876 3 34443 4455667888999999999864
No 66
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.63 E-value=0.0043 Score=74.76 Aligned_cols=90 Identities=9% Similarity=0.008 Sum_probs=52.1
Q ss_pred Cccceeeccceeee---hhhHHHHHH---HHhcCCCCCceEEeeceeeccCCCcccccCCC---------------ccCh
Q psy17125 767 PAHVYMEGMDQING---WFMSSLLTS---VALKHTAPFRNVFLHGFVVDEKGAKMSKSVGN---------------VISA 825 (1281)
Q Consensus 767 p~dl~~~G~Dii~~---wf~~~l~~~---~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GN---------------vv~p 825 (1281)
++|-+.+|.+++.. |..+..... .++. +|+....-+|++. .+|+|||||+|| ..+.
T Consensus 279 ~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG--~~~P~y~H~~~L~-~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti 355 (553)
T 3aii_A 279 AVDDHLLGVTHVLRGKDHLANREKQEYLYRHLG--WEPPEFIHYGRLK-MDDVALSTSGAREGILRGEYSGWDDPRLGTL 355 (553)
T ss_dssp HHHHHHTTCCEEEC-----CHHHHHHHHHHHHT--CCCCEEECCCCBC--------CHHHHHHHHHSSCCSTTCTTSCBH
T ss_pred eeeeccCCCceEeccHhhhhCHHHHHHHHHHcC--CCCCeEEEeeEEe-cCCceechhhhhhhccccccccccCcchHHH
Confidence 34666677776654 443332222 2232 2334566668874 799999999997 3444
Q ss_pred hhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchh
Q psy17125 826 HDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNIL 887 (1281)
Q Consensus 826 ~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l 887 (1281)
..+.. ..|.++++|.|+++.+...++.+|+.+.|
T Consensus 356 ~~lr~----------------------------rG~~PeaIr~fl~~~G~s~~~~~~s~~~L 389 (553)
T 3aii_A 356 RAIAR----------------------------RGIRPEAIRKLMVEIGVKIADSTMSWKKI 389 (553)
T ss_dssp HHHHH----------------------------TTCCHHHHHHHHHHHTTCSSCBCCCHHHH
T ss_pred HHHHH----------------------------cCCCHHHHHHHHHhcCCCCccccccHHHH
Confidence 55544 04889999999999998778888887764
No 67
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=95.56 E-value=0.013 Score=67.07 Aligned_cols=59 Identities=29% Similarity=0.301 Sum_probs=40.4
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhh
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHD 827 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~d 827 (1281)
+.+|+...|.||.. |+....-.+-.+....| ..+.++++.+.+|+|||||.||.|++.+
T Consensus 169 ~~~~~v~~G~DQ~~-~~~l~rdla~~~~~~~p--~~l~~pll~~l~G~KMSKS~~n~I~l~d 227 (323)
T 2cyb_A 169 LGVDLAVGGIDQRK-IHMLARENLPRLGYSSP--VCLHTPILVGLDGQKMSSSKGNYISVRD 227 (323)
T ss_dssp TTCSEEEEEGGGHH-HHHHHHHHGGGGTCCCC--EEEEECCCBCTTSSBCCTTTTCSCBTTC
T ss_pred cCCCEEEechhhHH-HHHHHHHHHHhcCCCCc--eEEecCcccCCCCCcccCCcCceeCCCC
Confidence 57899999999975 32222111112223334 4677899989999999999999987654
No 68
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=93.93 E-value=0.067 Score=64.30 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=51.9
Q ss_pred ccceeeccceeee---hhhHHHHHH---HHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccc
Q psy17125 768 AHVYMEGMDQING---WFMSSLLTS---VALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKS 841 (1281)
Q Consensus 768 ~dl~~~G~Dii~~---wf~~~l~~~---~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks 841 (1281)
+|-+.+|.+++.. |+.+..... .++....| ....++++++.+|+|||||.||+ ...++.+
T Consensus 197 vDD~~~gIthviRG~D~~~~t~~q~~l~~alg~~~P--~~~H~plil~~~g~KLSKr~g~~-~l~~~r~----------- 262 (492)
T 2cfo_A 197 VDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPP--NFAHTPLILNSTGQKLSKRDGVT-SISDFRA----------- 262 (492)
T ss_dssp HHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCC--EEEEECCEECSSSSBCCTTSSCC-BHHHHHH-----------
T ss_pred hhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCCCCc--eEEEeeeEECCCCCEecccCCcc-cHHHHHH-----------
Confidence 5666777777655 554432222 23333333 44445888899999999999997 5666665
Q ss_pred cCcccccccccccccCCCCCchhHHHHHHHhcCC
Q psy17125 842 VGNVISAHDITQGAKKLPAYGVDVLRWWVAAHAS 875 (1281)
Q Consensus 842 ~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~ 875 (1281)
..|-++++|.||+..+.
T Consensus 263 -----------------~G~~peal~~~l~~lG~ 279 (492)
T 2cfo_A 263 -----------------MGYLAPALANYMTLLGW 279 (492)
T ss_dssp -----------------TTCCHHHHHHHHHHTTB
T ss_pred -----------------CCCCHHHHHHHHHHhCC
Confidence 04779999999999764
No 69
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=93.54 E-value=0.026 Score=68.07 Aligned_cols=88 Identities=11% Similarity=0.062 Sum_probs=57.0
Q ss_pred Cccceeeccceee---ehhhHHHHHHH---HhcCCCCCceEEeeceeeccCCCcccccCCC---------------ccCh
Q psy17125 767 PAHVYMEGMDQIN---GWFMSSLLTSV---ALKHTAPFRNVFLHGFVVDEKGAKMSKSVGN---------------VISA 825 (1281)
Q Consensus 767 p~dl~~~G~Dii~---~wf~~~l~~~~---~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GN---------------vv~p 825 (1281)
++|-+.+|.+++. -|..+...... ++ +..++.+.+.+|++ +.+|.|||||+|| .++.
T Consensus 216 vvDDh~~GITHviRg~e~~~n~~~q~~l~~al-g~~~~P~~~~f~hL-n~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti 293 (553)
T 1qtq_A 216 CISDALEGITHSLCTLEFQDNRRLYDWVLDNI-TIPVHPRQYEFSRL-NLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTI 293 (553)
T ss_dssp HHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTS-CCSCCCEEEEECCC-CBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBH
T ss_pred EEEeccCCcceEeeccchhhhHHHHHHHHHHc-CCCCCCCeEEEEee-cCCCccccccccccccccCcccCCCCcchhhH
Confidence 4677788888876 45444443332 23 22212456678887 5899999999987 4445
Q ss_pred hhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCc
Q psy17125 826 HDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGK 884 (1281)
Q Consensus 826 ~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~ 884 (1281)
.++.+ . .|.++++|.|++..+....+..++.
T Consensus 294 ~~lr~-------------------------r---Gy~PeAirnfl~~lG~s~~~~~~e~ 324 (553)
T 1qtq_A 294 SGLRR-------------------------R---GYTAASIREFCKRIGVTKQDNTIEM 324 (553)
T ss_dssp HHHHH-------------------------H---TCCHHHHHHHHHHHCCCSSCCCBCH
T ss_pred HHHHH-------------------------C---CCCHHHHHHHHHHcCCCCCccccch
Confidence 55554 0 4889999999999887544443443
No 70
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=91.73 E-value=0.065 Score=61.00 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=38.7
Q ss_pred Cccceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhh
Q psy17125 767 PAHVYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHD 827 (1281)
Q Consensus 767 p~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~d 827 (1281)
.+|+.+.|.||.... +.+-+... +....| -.+.+.++...+|+|||||.+|.|+..+
T Consensus 191 ~~~v~~gG~DQ~~~i~l~rdla~r--~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 191 GVVLCIGGSDQWGNITSGIDLTRR--LHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP 248 (322)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHH--HHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST
T ss_pred CceEEecCchhHHHHHHHHHHHHH--hCCCCc--eeeccCccCCCCcccccCCCCCeeeccC
Confidence 788889999998533 11222222 223333 4557788887899999999999887665
No 71
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=91.47 E-value=0.094 Score=61.77 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=40.1
Q ss_pred CCccceeeccceeeehhhHHHHHHHHh-cCCCCCceEEeeceeeccCCCcccccCCCccChhh
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVAL-KHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHD 827 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l-~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~d 827 (1281)
+.+|+...|.||..+. ....=.+--+ ... | .-.+.+.++...+|+|||||.||.|+..+
T Consensus 185 ~~~~i~~gG~DQ~~ni-~~grdla~r~~~~~-~-~~~l~~pll~~ldG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNI-TSGIELMRRMYGQT-D-AYGLTIPLVTKSDGKKFGKSESGAVWLDA 244 (420)
T ss_dssp HCEEEEEEEGGGHHHH-HHHHHHHHHHHCCC-C-CEEEEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred CCCcEEeccHHHHHHH-HHHHHHHHHhcCCC-C-eeEeecccccCCccccccCCCCCeEecCC
Confidence 4789999999998533 2221111122 223 3 35667888888999999999999987654
No 72
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=91.47 E-value=0.086 Score=61.92 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=39.2
Q ss_pred CCccceeeccceeeehhhHHHHHHHHh-cCCCCCceEEeeceeeccCCCcccccCCCccChhh
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVAL-KHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHD 827 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l-~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~d 827 (1281)
+.+|+...|.||..+. ....=..--+ ... | .-.+.+.++...+|+|||||.||.|+..+
T Consensus 184 ~~~~i~~gG~DQ~~ni-~lgrdlarr~~~~~-~-~~~lt~pll~~ldG~KMSKS~~naI~L~d 243 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNI-TAGLELIRKTKGEA-R-AFGLTIPLVTKADGTKFGKTESGTIWLDK 243 (419)
T ss_dssp HCEEEEEEEGGGHHHH-HHHHHHHHHHHC---C-CEEEEECCCCCTTSCCTTCCSSCCCBSST
T ss_pred CCCcEEeccHHHHHHH-HHHHHHHHHhcCCC-C-eeecccccccCCCcccccCCCCCeEecCC
Confidence 4789999999998533 2221111112 222 3 34667888888899999999999987654
No 73
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=91.40 E-value=0.075 Score=61.24 Aligned_cols=59 Identities=24% Similarity=0.242 Sum_probs=27.3
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhh
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHD 827 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~d 827 (1281)
+.+|+...|.||... +....=.+--+....| -.+.+.++...+|+|||||.||.|+..+
T Consensus 209 ~~~~i~p~G~DQ~~~-i~l~rdla~r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d 267 (356)
T 2pid_A 209 YGCRVQLGGSDQLGN-IMSGYEFINKLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR 267 (356)
T ss_dssp HCCCEEEEEGGGHHH-HHHHHHHHHHHSSCCC--EEEEECCCC-------------CCBSST
T ss_pred CCCcEEeccHHHHHH-HHHHHHHHHHhCCCCc--cccccccccCCCcccccCCCCCeeeccC
Confidence 378999999999853 3222111112223333 4566788888899999999999987665
No 74
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=91.30 E-value=0.089 Score=59.80 Aligned_cols=59 Identities=31% Similarity=0.266 Sum_probs=38.4
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHh----cCCCCCceEE--eeceeeccCCCcccccCCCccCh
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVAL----KHTAPFRNVF--LHGFVVDEKGAKMSKSVGNVISA 825 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l----~~~~Pf~~v~--~hG~vld~~G~KMSKS~GNvv~p 825 (1281)
+-+|+...|.||.... +.+-+...... ....| +.++ .+.++...+|+|||||.+|.|+.
T Consensus 138 ~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P-~~~~~~~~~~l~~l~G~KMSKS~~n~I~L 203 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLP-EARVNEEVAVVVGTDGAKMSKSYQNTIDI 203 (322)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCC-EEECCCSSCCCBCTTSSBCCGGGTCCCBS
T ss_pred hCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCc-hhhhccccccccCCCCCcCCCCCCCceec
Confidence 5678999999998543 22222222111 11234 5555 37788888999999999998854
No 75
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=91.20 E-value=0.11 Score=61.17 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=39.4
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCC-ccChhh
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGN-VISAHD 827 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GN-vv~p~d 827 (1281)
+.+|+...|.||..+ +....=..--+....| -.+.+.++...+|+|||||.|| .|+..+
T Consensus 186 ~~~~i~~gG~DQ~~n-i~lgrdlarr~~~~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d 245 (432)
T 2jan_A 186 HGCTLQIGGADQWGN-IIAGVRLVRQKLGATV--HALTVPLVTAADGTKFGKSTGGGSLWLDP 245 (432)
T ss_dssp HCCCEEEECSTTHHH-HHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTBCSSSCBCBSST
T ss_pred CCCcEEeccHHHHHH-HHHHHHHHHHhCCCCc--cccccccccCCCcCcCCCCCCCCeEEccC
Confidence 478999999999853 3222111112223333 4566788888899999999999 886554
No 76
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=90.65 E-value=0.12 Score=59.93 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=30.4
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCC-ccCh
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGN-VISA 825 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GN-vv~p 825 (1281)
+.+|+...|.||.... ....-..-.+....| ..+.+.++...+|+|||||.+| .|+.
T Consensus 177 ~~a~~v~~G~DQ~~~~-~l~rdl~~r~~~~~p--~~l~~pll~gldG~KMSKS~~ns~I~L 234 (372)
T 1n3l_A 177 LKVDAQFGGIDQRKIF-TFAEKYLPALGYSKR--VHLMNPMVPGLTGSKMSSSEEESKIDL 234 (372)
T ss_dssp TTCSEEEEEGGGHHHH-HHHHHHGGGGTCCCC--EEEEECCCCCSSCC-------CCSCBT
T ss_pred hcCCEEEcChhHHHHH-HHHHHHHHHcCCCCC--EEEecCccCCCCcccccCCCCCCeEec
Confidence 5678889999997532 222111112222334 4556888888999999999999 5753
No 77
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=90.46 E-value=0.14 Score=58.54 Aligned_cols=61 Identities=23% Similarity=0.225 Sum_probs=39.3
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHhc-C---CCCCceEEe-eceeeccCCCcccccCCCccChhh
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVALK-H---TAPFRNVFL-HGFVVDEKGAKMSKSVGNVISAHD 827 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l~-~---~~Pf~~v~~-hG~vld~~G~KMSKS~GNvv~p~d 827 (1281)
+-+|+...|.||.... +.+-+....... + ..| ..++. +.++...+|.|||||.+|.|+..|
T Consensus 152 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~gldG~KMSKS~~n~I~L~d 218 (340)
T 2g36_A 152 YKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEP-EAILSRVPKLPGTDGRKMSKSYGNIINLEI 218 (340)
T ss_dssp TTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCC-EEEECCSCCCCCTTSSCCCGGGTCCCBTTC
T ss_pred hCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCc-hhhhccccccCCCCccccCCCCCCeEeeeC
Confidence 5688999999998633 222222222111 2 244 44554 578888899999999999986443
No 78
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=90.42 E-value=0.096 Score=61.08 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=38.3
Q ss_pred CCccceeeccceeeehhhHH--HHHHH---H--------hcCCC--CCceEEeeceeeccCCCcccccCCCccChhh
Q psy17125 766 KPAHVYMEGMDQINGWFMSS--LLTSV---A--------LKHTA--PFRNVFLHGFVVDEKGAKMSKSVGNVISAHD 827 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~--l~~~~---~--------l~~~~--Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~d 827 (1281)
+.+|+...|.||.. |+... +.... . +..+. +..-.+.+.++...+|+|||||.||.|+..+
T Consensus 231 ~~~~i~~gG~DQ~~-ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 231 QGVQMQIGGSDQYG-NIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp HCEEEEEECTTCHH-HHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSST
T ss_pred CCccEEecCcchHh-HHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccC
Confidence 47889999999953 43221 11110 0 00100 1134567888888999999999999987654
No 79
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=89.98 E-value=0.14 Score=59.89 Aligned_cols=57 Identities=23% Similarity=0.181 Sum_probs=29.1
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccC-CCcccccCCCc-cCh
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEK-GAKMSKSVGNV-ISA 825 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~-G~KMSKS~GNv-v~p 825 (1281)
+.+++.+.|.||.. |+....-..-.+....| ..+.+.++.+.+ |+|||||.+|. |+.
T Consensus 181 ~~~~~v~~G~DQ~~-~~~l~rdl~~r~~~~~p--~~l~~pll~gl~~G~KMSKS~~ns~I~L 239 (394)
T 2dlc_X 181 LDVDCQFGGVDQRK-IFVLAEENLPSLGYKKR--AHLMNPMVPGLAQGGKMSASDPNSKIDL 239 (394)
T ss_dssp TTCSEEEEEGGGHH-HHHHHHHHGGGGTCCCC--EEEEECCCCCCC----------CCSCBT
T ss_pred hCCCEEecCccHHH-HHHHHHHHHHHcCCCCC--EEEecccccCCCCCCcCCCCCCCCEEec
Confidence 57888899999975 33222222222323334 455678888888 99999999996 754
No 80
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=89.68 E-value=0.17 Score=63.75 Aligned_cols=87 Identities=10% Similarity=0.010 Sum_probs=54.1
Q ss_pred Cccceeeccceeee---hhhHHHHHH---HHhcCCCCC-ceEEeeceeeccCCCcccccCCC---------------ccC
Q psy17125 767 PAHVYMEGMDQING---WFMSSLLTS---VALKHTAPF-RNVFLHGFVVDEKGAKMSKSVGN---------------VIS 824 (1281)
Q Consensus 767 p~dl~~~G~Dii~~---wf~~~l~~~---~~l~~~~Pf-~~v~~hG~vld~~G~KMSKS~GN---------------vv~ 824 (1281)
++|-+.+|.+|+.. |..+..... .++. +++ ...+.+|++. .+|.|||||+|| .++
T Consensus 256 vVDD~~~GITHViRG~D~~~n~~~q~~l~~alG--~~~~P~~~~fahLn-~~g~KLSKR~g~~~v~~g~v~gwDDPr~~T 332 (851)
T 2hz7_A 256 PLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLN--FDPRPHQYEFGRRG-LEYTITSKRKLRELVQAGRVSGWDDPRMPT 332 (851)
T ss_dssp HHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTT--CSSCCEEEEECCEE-ETTCCCCHHHHHHHHHTTSSSSTTCTTSSB
T ss_pred EeeeccCCcceeecchhhhhChHHHHHHHHHcC--CCCCCCceEEEEec-CCCccccccccccccccCcccCCCCcchhH
Confidence 45667777777654 543332222 2232 232 3555778874 799999999987 233
Q ss_pred hhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCCCCCccccCc
Q psy17125 825 AHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGK 884 (1281)
Q Consensus 825 p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~ 884 (1281)
..++.+ . .|.++++|.|++..+....+..++.
T Consensus 333 I~~lr~-------------------------r---Gy~PeAIr~fl~~lG~s~~~~~~e~ 364 (851)
T 2hz7_A 333 LRAQRR-------------------------L---GVTPEAVRAFAAQIGVSRTNRTVDI 364 (851)
T ss_dssp HHHHHH-------------------------H---TCCHHHHHHHHHHSCCCSSCEEECH
T ss_pred HHHHHH-------------------------c---CCCHHHHHHHHHhcCCCCCcccccH
Confidence 444443 0 4889999999999987545544443
No 81
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=89.28 E-value=0.17 Score=57.93 Aligned_cols=59 Identities=29% Similarity=0.294 Sum_probs=36.7
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHH-hcC---CCCCceEEee--ceeeccCC-CcccccCCCccCh
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVA-LKH---TAPFRNVFLH--GFVVDEKG-AKMSKSVGNVISA 825 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~-l~~---~~Pf~~v~~h--G~vld~~G-~KMSKS~GNvv~p 825 (1281)
+-+|+...|.||.... +.+-+..... ..+ ..| ..++.- .++...+| +|||||.+|.|+.
T Consensus 140 ~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P-~~~~~~~~p~l~gldG~~KMSKS~~n~I~L 206 (337)
T 2el7_A 140 YKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEP-QALLNPEAPRVPGIDGKAKMSKSLGNTIGL 206 (337)
T ss_dssp TTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCC-EEECCTTSCCCBCTTSSSBCCTTTTCCCBS
T ss_pred hCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCC-eeecccccccccCCCCccccCCCCCCeeeC
Confidence 5688999999998633 1122221110 012 334 334332 58888899 9999999998854
No 82
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=88.61 E-value=0.34 Score=57.17 Aligned_cols=59 Identities=32% Similarity=0.335 Sum_probs=39.6
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCC-cccccCCCccChhh
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGA-KMSKSVGNVISAHD 827 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~-KMSKS~GNvv~p~d 827 (1281)
+.+|+...|.||.. |+....=..--+ +..| ...+.+.++...+|. |||||.||.|+..+
T Consensus 186 l~~~l~~gG~DQ~~-ni~l~rdlarr~-~~~~-~~~lt~pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 186 IRADVEMGGTDQRF-NLLVGREVQRAY-GQSP-QVCFLMPLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp HTCSEEEEEGGGHH-HHHHHHHHHHHT-TCCC-CEEEEECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred cCccEEEechHHHH-HHHHHHHHHHHh-CCCC-ceEeecccccCCCCccccCcCCCCeeCCCC
Confidence 35789999999974 433222111122 2334 456678898888996 99999999987554
No 83
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=88.48 E-value=0.54 Score=56.38 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=50.6
Q ss_pred ccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccc
Q psy17125 768 AHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVIS 847 (1281)
Q Consensus 768 ~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~ 847 (1281)
.+..+-|.|++. +....+....++....| ....++++++.+|+||||++|++ ...++.+-
T Consensus 219 ithvirG~D~~~-~t~~q~~l~~aLG~~~p--~~~H~plil~~~G~KLSKR~g~~-~l~~~~~~---------------- 278 (481)
T 2o5r_A 219 ITHVIRGDDHLS-NTLRQLALYEAFEKAPP--VFAHVSTILGPDGKKLSKRHGAT-SVEAFRDM---------------- 278 (481)
T ss_dssp CSEEEEEGGGHH-HHHHHHHHHHHTTCCCC--EEEEECCEECTTSSBCCGGGSCC-BHHHHHHH----------------
T ss_pred CCeEEEChhHHH-hHHHHHHHHHHcCCCCC--eEEEEeeEECCCCCcccCcCCcc-cHHHHHHC----------------
Confidence 444566777662 33334444444543444 45555888889999999999998 67777760
Q ss_pred cccccccccCCCCCchhHHHHHHHhcCC
Q psy17125 848 AHDITQGAKKLPAYGVDVLRWWVAAHAS 875 (1281)
Q Consensus 848 ~~~~~~~~~~i~~yGaDalR~~l~~~~~ 875 (1281)
.|-++++|.|++..+.
T Consensus 279 ------------G~~peal~~~l~~lG~ 294 (481)
T 2o5r_A 279 ------------GYLPEALVNYLALLGW 294 (481)
T ss_dssp ------------TCCHHHHHHHHHTSSB
T ss_pred ------------CCCHHHHHHHHHHhCC
Confidence 3568899999888654
No 84
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=88.14 E-value=0.19 Score=57.85 Aligned_cols=59 Identities=25% Similarity=0.232 Sum_probs=37.6
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHH-hcC---CCCCceEEe-eceeeccCCC-cccccCCCccCh
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVA-LKH---TAPFRNVFL-HGFVVDEKGA-KMSKSVGNVISA 825 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~-l~~---~~Pf~~v~~-hG~vld~~G~-KMSKS~GNvv~p 825 (1281)
+-+|+...|.||.... +.+-+..... ..+ ..| ..++. +.++...+|. |||||.+|.|+.
T Consensus 161 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~~ldG~~KMSKS~~n~I~L 226 (351)
T 1yi8_B 161 FGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEP-QAQLSRVPRLPGLDGQAKMSKSLGNAIAL 226 (351)
T ss_dssp HTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCC-EEEECSSCSCCCTTSSSCCCTTTTCCCBT
T ss_pred cCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCC-eeeeecCccccCCCCccccCCCCCCeecC
Confidence 4678999999998633 1222222111 112 344 45554 5788888997 999999998854
No 85
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=85.40 E-value=1.4 Score=52.54 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=47.5
Q ss_pred ceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccc
Q psy17125 770 VYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAH 849 (1281)
Q Consensus 770 l~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~ 849 (1281)
..+-|.|++.. -........++....| ....++++++.+|+||||+.||. ...++.+
T Consensus 202 hvirG~D~~~~-t~~q~~l~~alg~~~p--~~~h~~li~~~~g~klSKR~g~~-~l~~~~~------------------- 258 (468)
T 1j09_A 202 DVIRAEEWLVS-TPIHVLLYRAFGWEAP--RFYHMPLLRNPDKTKISKRKSHT-SLDWYKA------------------- 258 (468)
T ss_dssp EEEEEGGGGGG-HHHHHHHHHHHTCCCC--EEEEECCCBCTTSCBCCTTTSCC-BHHHHHH-------------------
T ss_pred eEEEChhhhhh-HHHHHHHHHHcCCCCC--eEEEeeeeeCCCCCccccccchh-hHHHHHH-------------------
Confidence 33446665532 2222222233433333 44455888899999999999998 5666665
Q ss_pred cccccccCCCCCchhHHHHHHHhcCC
Q psy17125 850 DITQGAKKLPAYGVDVLRWWVAAHAS 875 (1281)
Q Consensus 850 ~~~~~~~~i~~yGaDalR~~l~~~~~ 875 (1281)
..|-++++|-||+..+.
T Consensus 259 ---------~G~~peal~~~l~~lG~ 275 (468)
T 1j09_A 259 ---------EGFLPEALRNYLCLMGF 275 (468)
T ss_dssp ---------TTCCHHHHHHHHHHHSC
T ss_pred ---------CCCCHHHHHHHHHHhcc
Confidence 04679999999998775
No 86
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=84.21 E-value=0.72 Score=52.18 Aligned_cols=54 Identities=26% Similarity=0.236 Sum_probs=36.5
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCC-CcccccCCCccChh
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKG-AKMSKSVGNVISAH 826 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G-~KMSKS~GNvv~p~ 826 (1281)
+-+|+...|.||.... .+... +....| .+..+.++...+| +|||||.||.|+..
T Consensus 162 ~~~~~v~~G~DQ~~~~---~l~R~--i~~~~~--~~~~~~~l~~l~G~~KMSKS~~~~I~L~ 216 (314)
T 2zp1_A 162 LGVDVAVGGMEQRKIH---MLARE--LLPKKV--VCIHNPVLTGLDGEGKMSSSKGNFIAVD 216 (314)
T ss_dssp HTCSEEEEEGGGHHHH---HHHHH--HSSSCC--EEEEECCCBCTTSSSBCCTTTTCSCBTT
T ss_pred hCCCEEEcChhHHHHH---HHHHH--hcCCCc--EEeeccccccCCcccccCCCCcceecCC
Confidence 3578889999998522 12111 222233 4566788888899 79999999988643
No 87
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=83.96 E-value=0.47 Score=54.01 Aligned_cols=59 Identities=22% Similarity=0.145 Sum_probs=36.7
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHH--hc--CCCCCceEEe--eceeeccCC--CcccccCCC-c--cCh
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVA--LK--HTAPFRNVFL--HGFVVDEKG--AKMSKSVGN-V--ISA 825 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~--l~--~~~Pf~~v~~--hG~vld~~G--~KMSKS~GN-v--v~p 825 (1281)
+-+|+...|.||.... +.+-+..... .. ...| ..++. +.++...+| +|||||.+| . |+.
T Consensus 136 ~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P-~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L 206 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIP-EARIPKVGARIMSLVDPTKKMSKSDPNPKAYITL 206 (328)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCC-EEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBT
T ss_pred hCCCEEecccchHHHHHHHHHHHHHhCcccccccCCC-eeeeccccccccCCCCCccCCCCCCCCcCceeee
Confidence 5688999999998633 2222222211 11 1234 44443 577778888 999999999 5 643
No 88
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=83.85 E-value=0.56 Score=55.32 Aligned_cols=57 Identities=23% Similarity=0.224 Sum_probs=31.6
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeeccCC--CcccccCCC-ccChh
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDEKG--AKMSKSVGN-VISAH 826 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G--~KMSKS~GN-vv~p~ 826 (1281)
+-+++...|.||.... +.+-+... +....| .++.+.++...+| .|||||.+| .|+..
T Consensus 248 ~~~~lvp~G~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~ 308 (432)
T 2ip1_A 248 KTPCLIPCAIDQDPYFRVCRDVADK--LKYSKP--ALLHSRFFPALQGSTTKMSASDDTTAIFMT 308 (432)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHHHHH--HTSCCC--EEEEECCCCCTTC--------CGGGCCBTT
T ss_pred CCceEEEeccCcHHHHHHHHHHHHH--hCCCCc--eeeccccccCCCCCccccCCCCCCCeEecc
Confidence 3466777899998542 22222222 222445 3567889988999 999999999 77543
No 89
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=83.69 E-value=0.47 Score=54.43 Aligned_cols=59 Identities=25% Similarity=0.173 Sum_probs=37.1
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHH-hcC---CCCCceEEe--eceeeccCC--CcccccCCC---ccCh
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVA-LKH---TAPFRNVFL--HGFVVDEKG--AKMSKSVGN---VISA 825 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~-l~~---~~Pf~~v~~--hG~vld~~G--~KMSKS~GN---vv~p 825 (1281)
+-+|+...|.||.... +.+-+..... ..+ ..| ..++. +.++...+| +|||||.+| .|+.
T Consensus 146 ~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P-~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L 216 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLP-QFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYL 216 (348)
T ss_dssp TCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCC-EEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBT
T ss_pred hCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCC-eeecccccccccCCCCcchhcCCCCCCCCceEee
Confidence 5688999999998643 2222222211 111 234 44443 577878888 999999999 7754
No 90
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=83.64 E-value=1.6 Score=52.31 Aligned_cols=47 Identities=15% Similarity=0.001 Sum_probs=37.4
Q ss_pred eEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCC
Q psy17125 800 NVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHAS 875 (1281)
Q Consensus 800 ~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~ 875 (1281)
....+.++++.+|+||||+.|++ +..++.+- -|.++++|.|++..+.
T Consensus 243 ~~~h~plil~~~g~KLSKR~g~~-~l~~~r~~----------------------------G~~peAl~~~l~~lG~ 289 (498)
T 2ja2_A 243 KFAHLPTVLGEGTKKLSKRDPQS-NLFAHRDR----------------------------GFIPEGLLNYLALLGW 289 (498)
T ss_dssp EEEEECCEECSSSSBCCTTSGGG-BHHHHHHH----------------------------TCCHHHHHHHHHTSSC
T ss_pred eEEEeeeeECCCCCcccccCCcc-cHHHHHhC----------------------------CCCHHHHHHHHHHhCC
Confidence 55555888899999999999994 56666550 4779999999998775
No 91
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=83.29 E-value=1.7 Score=50.61 Aligned_cols=41 Identities=22% Similarity=0.132 Sum_probs=27.2
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecc
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 64 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G 64 (1281)
+++.+..|+ -|||.|||||+++.+. ..++++ .|+++++..|
T Consensus 38 ~p~~vy~G~-~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~ 78 (394)
T 2dlc_X 38 RHLKLYWGT-APTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLA 78 (394)
T ss_dssp SCCEEEEEE-CCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CCeEEEEEe-CCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEc
Confidence 444444443 4489999999877664 445555 6888777655
No 92
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=83.28 E-value=0.59 Score=54.01 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=34.8
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccC-----------------CCccccc-CCCccCh
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEK-----------------GAKMSKS-VGNVISA 825 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~-----------------G~KMSKS-~GNvv~p 825 (1281)
+-+|+...|.||.... ....=.+-.+....| .++.+.++...+ |+||||| .+|.|+.
T Consensus 176 ~~~~~v~~G~DQ~~~~-~l~rdla~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L 250 (364)
T 2cya_A 176 MDLDIALGGMDQRKAH-MLARDVAEKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFV 250 (364)
T ss_dssp TTCSEEEEEGGGHHHH-HHHHHHHTTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSGGGSCBT
T ss_pred cCCCEEeccchHHHHH-HHHHHHHHHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCCCCEeec
Confidence 5678999999998532 211111111222334 356678888887 6899999 6787753
No 93
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=82.81 E-value=2.8 Score=47.47 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=41.8
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHH
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFAL 98 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~ 98 (1281)
+++.+..|+ -|||.||+||+ ..+. .+.++++ .|+++.+..|=.+ ++ . ++..+++++ ++.+
T Consensus 31 ~~~~vy~G~-~PTg~lHlG~l-~~l~--~~~~lq~-~g~~~~~~i~D~~-a~------~---~d~~~~~~i----~~~~- 90 (323)
T 2cyb_A 31 EKPRAYVGY-EPSGEIHLGHM-MTVQ--KLMDLQE-AGFEIIVLLADIH-AY------L---NEKGTFEEI----AEVA- 90 (323)
T ss_dssp SCCEEEEEE-CCCSCCBHHHH-HHHH--HHHHHHH-TTCEEEEEECHHH-HH------H---TTCCCHHHH----HHHH-
T ss_pred CCCEEEECc-CCCCcchHHHH-HHHH--HHHHHHH-CCCcEEEEECCce-eE------c---CCCCCHHHH----HHHH-
Confidence 344566665 58899999996 4333 3555554 4888777654211 10 0 111255444 3333
Q ss_pred HHHHHHHHHHHHcCceec
Q psy17125 99 ETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 99 ~~~~~~~~~l~~lgi~~D 116 (1281)
..+.+++.++|+..|
T Consensus 91 ---~~~~~~~~a~Gldp~ 105 (323)
T 2cyb_A 91 ---DYNKKVFIALGLDES 105 (323)
T ss_dssp ---HHHHHHHHHTTCCTT
T ss_pred ---HHHHHHHHHhCCCcc
Confidence 445668888987543
No 94
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=82.66 E-value=2.4 Score=50.76 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=37.2
Q ss_pred eEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCC
Q psy17125 800 NVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHAS 875 (1281)
Q Consensus 800 ~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~ 875 (1281)
....++++++.+|+||||+.|+ +...++.+- -|-++++|-||+..+.
T Consensus 241 ~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~----------------------------G~~peal~n~l~~lG~ 287 (488)
T 3afh_A 241 VFMHIPLILGSDRTPLSKRHGA-TSVEHFRRE----------------------------GILSRALMNYLALLGW 287 (488)
T ss_dssp EEEEECCEECTTSSBCCTTTSC-CBHHHHHHH----------------------------TCCHHHHHHHHHHTTC
T ss_pred eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHC----------------------------CCCHHHHHHHHHHhCC
Confidence 4555588889999999999999 466777660 4668999999998765
No 95
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=82.32 E-value=0.51 Score=54.94 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=25.4
Q ss_pred ccceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeeccCC--CcccccCCCccCh
Q psy17125 768 AHVYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDEKG--AKMSKSVGNVISA 825 (1281)
Q Consensus 768 ~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G--~KMSKS~GNvv~p 825 (1281)
+++...|.||-... +.+-+... +....| .++.+.++...+| .|||||.+|.|+.
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~I~L 281 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPR--LGYLKP--AVIHSKFFPGLSGPKGKMSSSSGTAVLL 281 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHH--HTCCCC--EEEEECCCCCC-------------CCBT
T ss_pred ceEEEeccchHHHHHHHHHHHHH--cCCCCc--eeeccccccCCCCCcccCCCCCCCcccC
Confidence 67888999998533 11222221 223334 4567888888899 7999999999954
No 96
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=81.25 E-value=4.5 Score=46.75 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecc
Q psy17125 21 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 64 (1281)
Q Consensus 21 f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G 64 (1281)
..+..|+- |||.|||||.++.+. ..++++ .|+++.+..|
T Consensus 36 ~~vy~G~~-PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 36 LKIYWGTA-TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp CEEEEEEC-CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CEEEeCcC-CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 35555655 789999999877665 455555 6888877655
No 97
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=81.14 E-value=1.1 Score=51.76 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=35.1
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHhcCCCCCc-eEEeeceeecc-CCC-cccccCC-CccCh
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVALKHTAPFR-NVFLHGFVVDE-KGA-KMSKSVG-NVISA 825 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~-~v~~hG~vld~-~G~-KMSKS~G-Nvv~p 825 (1281)
+-+|+...|.||-... +.+-+... + +.. ++ .++.+.++... +|. |||||.+ |.|+.
T Consensus 199 l~ad~vpgG~DQ~~~l~l~Rdla~r--~-~~~-~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L 259 (373)
T 3vgj_A 199 LNVDICQLGIDQRKVNMLAREYCDI--K-KIK-KKPVILSHGMLPGLLEGQEKMSKSDENSAIFM 259 (373)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHH--H-TCS-CCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBT
T ss_pred cCCcEEEcchhhHHHHHHHHHHHHH--h-CCC-CCceEEeCCeeecCCCCCCCCcCCCCCCeeec
Confidence 5678999999998533 12222222 2 222 12 35677888875 885 9999994 77753
No 98
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=80.79 E-value=0.78 Score=53.33 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=33.7
Q ss_pred ccceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeeccCC--CcccccCCC-ccC
Q psy17125 768 AHVYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDEKG--AKMSKSVGN-VIS 824 (1281)
Q Consensus 768 ~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G--~KMSKS~GN-vv~ 824 (1281)
+++...|.||.... +.+-+.. -+....| ..+.+.++...+| .|||||.+| .|.
T Consensus 208 a~~vpvG~DQ~~hl~l~Rdla~--r~n~~~p--~~l~~~~l~gLdG~~~KMSKS~~ns~I~ 264 (392)
T 3jxe_A 208 RCLIPAAIDQDPYWRLQRDFAE--SLGYYKT--AALHSKFVPSLTSLSGKMSASKPETAIY 264 (392)
T ss_dssp CEEEEEEGGGHHHHHHHHHHTG--GGTSCCC--EEEEECCCCCSSCSSSCCCTTSGGGCCB
T ss_pred CceeecccchHHHHHHHHHHHH--HcCCCCC--eeeecccccCCCCCccccccCCCCCeee
Confidence 56778999998432 1111111 1222344 4556888888888 599999998 774
No 99
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=80.77 E-value=1.6 Score=50.71 Aligned_cols=79 Identities=22% Similarity=0.193 Sum_probs=46.3
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHH
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNF 96 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~ 96 (1281)
.++++++..|.= |||.|||||..+... ..+++...|+++.+..| |.|++ .-. ...+++++ ++.
T Consensus 70 ~~~p~~i~sG~~-PTG~lHLGh~v~~~~---~~~lQ~~~g~~~~i~Ia-D~ha~------~~~--~~~~~e~i----~~~ 132 (392)
T 3jxe_A 70 EGRGFFLYTGRG-PSGPMHIGHIIPFFA---TKWLQEKFGVNLYIQIT-DDEKF------LFK--ENLTFDDT----KRW 132 (392)
T ss_dssp TTCCCEEEEEEC-CSSCCBHHHHHHHHH---HHHHHHHHCCEEEEEEC-HHHHH------HHC--SSCCHHHH----HHH
T ss_pred cCCCeEEEeccC-CCCchhHHHHHHHHH---HHHHHHhcCCceEEEec-chHHh------hcC--CCCCHHHH----HHH
Confidence 344455665654 569999999887652 22344446998888776 43321 100 11577666 333
Q ss_pred HHHHHHHHHHHHHHcCceec
Q psy17125 97 ALETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 97 ~~~~~~~~~~~l~~lgi~~D 116 (1281)
+.+ +.+++.++|+..+
T Consensus 133 ~~~----~~~~~lA~GlDp~ 148 (392)
T 3jxe_A 133 AYD----NILDIIAVGFDPD 148 (392)
T ss_dssp HHH----HHHHHHTTCCCTT
T ss_pred HHH----HHHHHHHhCcCcc
Confidence 333 3556677888765
No 100
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=80.69 E-value=5 Score=46.44 Aligned_cols=78 Identities=9% Similarity=-0.052 Sum_probs=47.5
Q ss_pred CCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHH
Q psy17125 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNF 96 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~ 96 (1281)
.++++.+..|+ -|||+|||||..+.. ++.++++.-|..+.+..|-++ +.... ..+++++ ++.
T Consensus 79 ~~~~~~vysG~-~PTG~lHLGh~v~~~---~~~~lQ~~~g~~v~i~I~D~~-------a~~~r---~~~~e~i----~~~ 140 (386)
T 3hzr_A 79 AKKPTFIFIQK-YPQKEVALEEYITLE---FARYLQDAFNIQVIIQILDDI-------KVLNR---EATINEA----SKM 140 (386)
T ss_dssp TTCCEEEEEEE-CCCSSCBGGGHHHHH---HHHHHHHHHCCEEEEEECHHH-------HHHTT---SCCHHHH----HHH
T ss_pred cCCCeEEEecc-CCCCCccHHHHHHHH---HHHHHHHhcCCeEEEEeCchH-------HhhcC---CCCHHHH----HHH
Confidence 44557777676 578999999977652 334466666888887743221 11111 1477666 344
Q ss_pred HHHHHHHHHHHHHHcCceec
Q psy17125 97 ALETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 97 ~~~~~~~~~~~l~~lgi~~D 116 (1281)
+. .+.+++.++|+..+
T Consensus 141 ~~----~~~~~~lA~GlDp~ 156 (386)
T 3hzr_A 141 SN----DLMKYILAFGFNED 156 (386)
T ss_dssp HH----HHHHHHHHTCCCGG
T ss_pred HH----HHHHHHHHcCCCCc
Confidence 44 34556778898776
No 101
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=80.24 E-value=1 Score=52.61 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=36.3
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeeccCC--CcccccC-CCccCh
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDEKG--AKMSKSV-GNVISA 825 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G--~KMSKS~-GNvv~p 825 (1281)
+-+++...|.||-... +.+-+... +....| .++.+.++...+| .|||||. +|.|+.
T Consensus 242 ~~a~lvpvG~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~~I~L 301 (406)
T 3tze_A 242 GAMCLVPAAVDQDPFFRLARDKAKA--LGEKKP--SSIYVSLLPDLKGVNRKMSASDPNSSIYL 301 (406)
T ss_dssp TCEEEEEEEGGGHHHHHHHHHHHHH--HTCCCC--EEEEECCCCCTTSCCCCSSCSCGGGSCBT
T ss_pred CCCeEEeeccchHHHHHHHHHHHHH--cCCCCc--eeeccCcccCCCCCCcCCCCCCCCCcccC
Confidence 3467778899998533 22222222 222334 4557888888899 6999999 678854
No 102
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=78.84 E-value=1.2 Score=51.13 Aligned_cols=55 Identities=20% Similarity=0.093 Sum_probs=34.4
Q ss_pred Cccceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeecc-CC-CcccccC-CCccCh
Q psy17125 767 PAHVYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDE-KG-AKMSKSV-GNVISA 825 (1281)
Q Consensus 767 p~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~-~G-~KMSKS~-GNvv~p 825 (1281)
-+|+...|.||.... +.+-+. -.+....| .+..+.++... +| .|||||. +|.|+.
T Consensus 186 ~~~~~~~G~DQ~~~i~l~Rdia--~r~~~~~p--~~~~~~~l~gL~dg~~KMSKS~~~~~I~L 244 (348)
T 2j5b_A 186 GIDICQLGIDQRKVNMLAIEYA--NDRGLKIP--ISLSHHMLMSLSGPKKKMSKSDPQGAIFM 244 (348)
T ss_dssp CCSEECCBGGGHHHHHHHHHHH--HHTTCCCC--EEEEBCCCCCTTCSSCCCSTTCGGGSCBT
T ss_pred CCcEEEeccChHHHHHHHHHHH--HHhCCCCc--eeecCccccCCCCcccccccCCCCCeEee
Confidence 578888999998533 112221 12222333 45667788777 56 7999999 577753
No 103
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=78.75 E-value=1.4 Score=51.13 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=34.5
Q ss_pred ccceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeeccCCC-ccccc-CCCccCh
Q psy17125 768 AHVYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDEKGA-KMSKS-VGNVISA 825 (1281)
Q Consensus 768 ~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~-KMSKS-~GNvv~p 825 (1281)
.++.-.|.||-... +.+-+... +....| .++.+.++...+|. ||||| .+|.|..
T Consensus 225 a~~VpvG~DQ~~hl~l~Rdla~r--~n~~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L 281 (386)
T 3hzr_A 225 RCLVLDSIKNVQFHSIIDQIATT--LNFIQP--TVLFHKMVPLLSGVTKFDIPSDHNSILL 281 (386)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHH--HTCCCC--EEEEECCCCCTTCTTCCCCCCTTTSCBT
T ss_pred ccccccccchHHHHHHHHHHHHH--cCCCCc--eEeecCeeeCCCCCCccCcCCCCCeeec
Confidence 44445599998533 22222222 233445 56688888888995 99999 8998853
No 104
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=77.37 E-value=2 Score=52.71 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=37.1
Q ss_pred eEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCC
Q psy17125 800 NVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHAS 875 (1281)
Q Consensus 800 ~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~ 875 (1281)
....++++++.+|+||||+.|+ +...++.+- .|-++++|-||+..+.
T Consensus 345 ~~~hlpli~~~~g~KLSKR~g~-~~l~~~~~~----------------------------G~~peal~~~l~~lG~ 391 (592)
T 3al0_C 345 VFMHIPLILGSDRTPLSKRHGA-TSVEHFRRE----------------------------GILSRALMNYLALLGW 391 (592)
T ss_dssp BCCEECCCBCTTSSBCCTTTCS-SBHHHHHHT----------------------------TCCHHHHHHHHTTTTB
T ss_pred eEEEeeeeeCCCCCcccccCCc-ccHHHHHHC----------------------------CCCHHHHHHHHHHhCC
Confidence 4445578888999999999999 567777660 4679999999998765
No 105
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=76.90 E-value=1 Score=52.98 Aligned_cols=53 Identities=25% Similarity=0.220 Sum_probs=33.4
Q ss_pred ccceeeccceeeehhhHHHHHHHH--hcCCCCCceEEeeceeeccCC--CcccccCCC-ccCh
Q psy17125 768 AHVYMEGMDQINGWFMSSLLTSVA--LKHTAPFRNVFLHGFVVDEKG--AKMSKSVGN-VISA 825 (1281)
Q Consensus 768 ~dl~~~G~Dii~~wf~~~l~~~~~--l~~~~Pf~~v~~hG~vld~~G--~KMSKS~GN-vv~p 825 (1281)
+++.-.|.||.... .+...++ +....| .++.+.++...+| .|||||.+| .|+.
T Consensus 257 ~~lVpvG~DQ~~~i---~l~Rdla~r~~~~~P--~~l~~pll~gLdG~~~KMSKS~~nsaI~L 314 (437)
T 1r6u_A 257 QCLIPCAIDQDPYF---RMTRDVAPRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFL 314 (437)
T ss_dssp EEEEEEEGGGHHHH---HHHHHHGGGGTCCCC--EEEEECCCEETTEEEEECCTTSSSSCCBT
T ss_pred ceEEEeehhhHHHH---HHHHHHHHHhCCCCc--eEeecccccCCCCCccccCCCCCCCeeec
Confidence 34445699997432 1111111 222345 3467889999999 899999999 7754
No 106
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=75.35 E-value=1.5 Score=49.13 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=8.2
Q ss_pred ceEEeeceeeccCCCcccccCCCc
Q psy17125 799 RNVFLHGFVVDEKGAKMSKSVGNV 822 (1281)
Q Consensus 799 ~~v~~hG~vld~~G~KMSKS~GNv 822 (1281)
..+..++++++.+|+|||||.||+
T Consensus 213 p~~~H~pll~~~~g~KLSKR~g~~ 236 (298)
T 1nzj_A 213 PDYIHLPLALNPQGAKLSKQNHAP 236 (298)
T ss_dssp CEEEEECBCCC-------------
T ss_pred CeEEEeeeeECCCCCcccccCCcc
Confidence 466677888889999999999997
No 107
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=75.07 E-value=1.2 Score=53.07 Aligned_cols=55 Identities=22% Similarity=0.182 Sum_probs=33.7
Q ss_pred ccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCC--CcccccCCC-ccCh
Q psy17125 768 AHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKG--AKMSKSVGN-VISA 825 (1281)
Q Consensus 768 ~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G--~KMSKS~GN-vv~p 825 (1281)
+++...|.||.. |+...-=.+-.+....| .++.+.++...+| .|||||.+| .|+.
T Consensus 304 ~~~VpvG~DQ~~-~i~l~Rdla~r~~~~~p--~~l~~pll~gLdG~~~KMSKS~~nsaI~L 361 (477)
T 1r6t_A 304 QCLIPCAIDQDP-YFRMTRDVAPRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFL 361 (477)
T ss_dssp EEEEEEEGGGHH-HHHHHHHHGGGGTCCCC--EEEEECCCEETTEEEEECCTTSTTCCCBT
T ss_pred ceeEeccccHHH-HHHHHHHHHHHhCCCCc--eeeecccccCCCCCccccCCCCCCCceee
Confidence 344557999975 32111111111222445 3567889999999 899999999 7754
No 108
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=74.62 E-value=2.2 Score=49.28 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=29.6
Q ss_pred CCCCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecc
Q psy17125 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 64 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G 64 (1281)
..+++|+|+.|. -|||.|||||..+.. -.++..-.|++|.+..+
T Consensus 66 e~gk~~~v~sG~-~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~Ia 109 (372)
T 3a04_A 66 ARGERVAVLTGF-MPSGKFHFGHKLTVD----QLIYLQKNGFKVFVAIA 109 (372)
T ss_dssp HTTCCCEEEEEE-CCCSCCBHHHHHHHH----HHHHHHHTTCEEEEEEC
T ss_pred HcCCCCEEEeCc-CCCcHhHHHHHHHHH----HHHHHHhCCCeEEEEEe
Confidence 344556666664 568999999988532 23444456999987654
No 109
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=73.98 E-value=4.5 Score=46.75 Aligned_cols=80 Identities=13% Similarity=-0.119 Sum_probs=47.2
Q ss_pred EEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHH-HH
Q psy17125 21 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFA-LE 99 (1281)
Q Consensus 21 f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~-~~ 99 (1281)
+.+..|+ -|||.|||||.+..+.. +.++++ .|+++.+..|=.+ ++- -...+ .+++++ ++.+ ..
T Consensus 34 ~~vy~G~-~PTg~lHlG~yl~~l~~--~~~lQ~-~G~~~~~~iaD~h-a~~----~~~~g---~~~e~i----~~~~~~~ 97 (375)
T 2cyc_A 34 LQHYIGF-EISGYIHLGTGLMAGAK--IADFQK-AGIKTRVFLADWH-SWI----NDKLG---GDLEVI----QEVALKY 97 (375)
T ss_dssp CBEEEEE-CCCSCCBHHHHHHHHHH--HHHHHH-TTCBCEEEECHHH-HHH----TTGGG---GCHHHH----HHHHHHT
T ss_pred cEEEeCC-CCCCCcCchHHHHHHHH--HHHHHH-CCCcEEEEecCcE-EEc----CCCCC---CCHHHH----HHHHHHH
Confidence 3444443 46799999996665544 566665 5888877665221 110 01111 255555 5556 44
Q ss_pred HHHHHHHHHHHcCceec
Q psy17125 100 TINTQKAEFESWGVLAD 116 (1281)
Q Consensus 100 ~~~~~~~~l~~lgi~~D 116 (1281)
+...+.+++.++|+..+
T Consensus 98 ~~~~~~~~~la~G~dp~ 114 (375)
T 2cyc_A 98 FKVGMEKSIEVMGGDPK 114 (375)
T ss_dssp HHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHhCCCcc
Confidence 55555678999998776
No 110
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=73.68 E-value=4.5 Score=45.86 Aligned_cols=64 Identities=13% Similarity=0.192 Sum_probs=38.7
Q ss_pred CCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17125 30 ANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEFE 109 (1281)
Q Consensus 30 ~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~ 109 (1281)
|||.|||||..+.+.. +.++++ |+++.+..| |.|++-. ..+++++ ++++. .+.+++.
T Consensus 10 PTG~lHlGn~vg~l~~--~~~lQ~--g~~~~~~Ia-D~ha~~~----------~~~~e~i----~~~~~----~~~~~~l 66 (328)
T 1i6k_A 10 PSGVITIGNYIGALRQ--FVELQH--EYNCYFCIV-DQHAITV----------WQDPHEL----RQNIR----RLAALYL 66 (328)
T ss_dssp CCSCCBHHHHHHTHHH--HHHHTT--TSEEEEEEC-HHHHTTS----------CCCHHHH----HHHHH----HHHHHHH
T ss_pred CCCcccHHHHHHHHHH--HHHHHc--CCcEEEEEe-CceeecC----------CCCHHHH----HHHHH----HHHHHHH
Confidence 5799999999987733 334443 999877665 2222211 1256555 33333 4467778
Q ss_pred HcCceec
Q psy17125 110 SWGVLAD 116 (1281)
Q Consensus 110 ~lgi~~D 116 (1281)
++|+..+
T Consensus 67 a~Gldp~ 73 (328)
T 1i6k_A 67 AVGIDPT 73 (328)
T ss_dssp HTTCCTT
T ss_pred HhCCChh
Confidence 8897654
No 111
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=72.33 E-value=1.9 Score=50.07 Aligned_cols=52 Identities=25% Similarity=0.257 Sum_probs=22.0
Q ss_pred ceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeeccCC--CcccccCCC-ccCh
Q psy17125 770 VYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDEKG--AKMSKSVGN-VISA 825 (1281)
Q Consensus 770 l~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G--~KMSKS~GN-vv~p 825 (1281)
+...|.||-... +.+-+.. -+....| .++.+.++...+| .|||||.+| .|+.
T Consensus 223 lvp~G~DQ~~~i~l~Rdla~--r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~nsaI~L 278 (393)
T 3hv0_A 223 LVPHAIDQDPYFRMVRDVAP--RLGYLKP--SSIHSIFLPSLQGSQTKMSASVQNSSIFV 278 (393)
T ss_dssp EEEEEGGGHHHHHHHHHHTG--GGTCCCC--EEEEECCCCC-------------CCCCBT
T ss_pred ecccccchHHHHHHHHHHHH--HcCCCCc--eeeccCcccCCCCCCcCCCCCCCCCeEec
Confidence 457899997532 1111111 1222333 4567888888899 799999998 6753
No 112
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=68.59 E-value=2.8 Score=48.36 Aligned_cols=75 Identities=17% Similarity=0.025 Sum_probs=43.4
Q ss_pred EEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Q psy17125 21 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALET 100 (1281)
Q Consensus 21 f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~ 100 (1281)
+.+..|+ -|||.||||| +..+.. +.++++ .|+++.+..| |.|++-. ...+ .+++++ ++.+.
T Consensus 36 ~~iy~G~-~PTg~lHlG~-l~~l~~--~~~lQ~-~G~~~~~~ia-D~~a~~~----~ps~---~~~e~i----~~~~~-- 96 (364)
T 2cya_A 36 IKGYIGY-EPSGVAHIGW-LVWMYK--VKDLVE-AGVDFSVLEA-TWHAYIN----DKLG---GDMDLI----RAAAR-- 96 (364)
T ss_dssp CEEEEEE-CCCSSCBTHH-HHHHHH--HHHHHH-TTCEEEEEEC-HHHHHHT----TGGG---GCHHHH----HHHHH--
T ss_pred CEEEecc-CCCCCccHhH-HHHHHH--HHHHHH-CCCCEEEEEe-CcchhhC----CCCC---CCHHHH----HHHHH--
Confidence 3444453 4589999999 666654 555655 5899888766 2222110 0111 256555 33333
Q ss_pred HHHHHHHHHHcCceec
Q psy17125 101 INTQKAEFESWGVLAD 116 (1281)
Q Consensus 101 ~~~~~~~l~~lgi~~D 116 (1281)
.+.+++.++|+..+
T Consensus 97 --~~~~~~la~G~dp~ 110 (364)
T 2cya_A 97 --IVRRVMEAAGVPVE 110 (364)
T ss_dssp --HHHHHHHHTTCCGG
T ss_pred --HHHHHHHHhCCCcc
Confidence 34567889998765
No 113
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=68.50 E-value=2 Score=49.68 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=34.7
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcC--------C-CCCceEEeeceeeccCC------------------Cccccc
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKH--------T-APFRNVFLHGFVVDEKG------------------AKMSKS 818 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~--------~-~Pf~~v~~hG~vld~~G------------------~KMSKS 818 (1281)
+-+|+...|.||.... ...-=.+--+.. . .| -+..+.++...+| .|||||
T Consensus 179 ~~~~~vp~G~DQ~~~i-~l~rdla~r~n~~~~~~~g~~~~~--~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMSKS 255 (375)
T 2cyc_A 179 QGVTIAHAGMDQRKAH-VIAIEVAQKLRYHPIVHEGEKLKP--VAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKS 255 (375)
T ss_dssp TTCSEEEEEGGGHHHH-HHHHHHGGGCSSSCEEETTEEECC--EEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGGGS
T ss_pred hCCCeecccchHHHHH-HHHHHHHHHhCCcccccccccCcc--EEeccccccCCCCcccccccchhhhhhhhhhhcccCC
Confidence 5678999999998432 211111111111 1 23 3456788888888 899999
Q ss_pred C-CCccCh
Q psy17125 819 V-GNVISA 825 (1281)
Q Consensus 819 ~-GNvv~p 825 (1281)
. +|.|+.
T Consensus 256 ~~~~~I~L 263 (375)
T 2cyc_A 256 KPYSAVFI 263 (375)
T ss_dssp CGGGSCBT
T ss_pred CCCCeecc
Confidence 8 677753
No 114
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=67.42 E-value=16 Score=42.26 Aligned_cols=78 Identities=21% Similarity=0.133 Sum_probs=45.3
Q ss_pred CCcEEEEcCCCCCC-CcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHH
Q psy17125 18 KPEFILHDGPPYAN-GTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNF 96 (1281)
Q Consensus 18 ~~~f~i~~~pP~~n-G~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~ 96 (1281)
++++++..|+ -|| |.||+||..... .+.++++.-|..|.+..| .+ + +..... ..+++++ +++
T Consensus 72 g~~~~vy~G~-~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~-----D~-~-~~~~r~--~~~~e~i----~~~ 134 (393)
T 3hv0_A 72 GELFYLYTGR-GPSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLT-----DD-E-KFIFKS--NLTLEET----HNY 134 (393)
T ss_dssp TCCCEEEEEE-CCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEEC-----HH-H-HHHHCT--TCCHHHH----HHH
T ss_pred CCCeEEEeCC-CCCCCCccHHHHHHHH---HHHHHHHhcCCCeEeecc-----Ch-H-HHhhcc--CCCHHHH----HHH
Confidence 3445566565 356 789999966654 355577776777766433 22 1 222221 2577766 444
Q ss_pred HHHHHHHHHHHHHHcCceec
Q psy17125 97 ALETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 97 ~~~~~~~~~~~l~~lgi~~D 116 (1281)
+.++ .+++.++|+..+
T Consensus 135 ~~~~----~~~~lA~GlDp~ 150 (393)
T 3hv0_A 135 AYEN----MKDIIACGFDPE 150 (393)
T ss_dssp HHHH----HHHHHTTCCCTT
T ss_pred HHHH----HHHHHHcCCCCc
Confidence 4443 456677887655
No 115
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=67.35 E-value=3.4 Score=47.42 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=22.3
Q ss_pred CCCc-CcchhhhhHHHHHHHHHHHHHCCCeeEEecc
Q psy17125 30 ANGT-PHIGHAVNKILKDITLRSNLLQGKRVHYVPG 64 (1281)
Q Consensus 30 ~nG~-lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G 64 (1281)
|||+ ||||| +..+.. +.++++ .|+++++..|
T Consensus 55 PTg~sLHLGh-l~~l~~--~~~lQ~-~G~~~~~lIa 86 (356)
T 2pid_A 55 PTADSLHVGH-LLALLG--LFHLQR-AGHNVIALVG 86 (356)
T ss_dssp CSSSSCBHHH-HHHHHH--HHHHHH-TTCEEEEEEC
T ss_pred CCCCcccHHH-HHHHHH--HHHHHH-CCCcEEEEEc
Confidence 5786 99999 555544 666665 5899888766
No 116
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=66.85 E-value=5.4 Score=45.65 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=43.7
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHH
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFAL 98 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~ 98 (1281)
+++.+..|+ -|||.||+||....+.. +.++++ .|+++.+..|=.+ ++-. ...+ .+++++ ++.+.
T Consensus 39 ~~~~vy~G~-~PTg~lHlGhyl~~l~~--~~~lQ~-~G~~~~~~i~D~~-a~~~----~~~~---~~~e~i----~~~~~ 102 (348)
T 2j5b_A 39 RIFTAYNGF-EPSGRIHIAQALITVMN--TNNMIE-CGGQMIIYIADWF-AKMN----LKMN---GDINKI----RELGR 102 (348)
T ss_dssp CCEEEEEEE-CCCSSCBHHHHHHHHHH--HHHHHH-TTEEEEEEECHHH-HHHT----TGGG---GCHHHH----HHHHH
T ss_pred CCCEEEecc-CCCCCCchhHHHHHHHH--HHHHHH-cCCcEEEEeccch-hhhC----CCCC---CCHHHH----HHHHH
Confidence 345555555 56699999995554433 566665 4898877665222 1100 0111 255554 33333
Q ss_pred HHHHHHHHHHHHcCceec
Q psy17125 99 ETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 99 ~~~~~~~~~l~~lgi~~D 116 (1281)
.+.+++.++|+..+
T Consensus 103 ----~~~~~~la~Gldp~ 116 (348)
T 2j5b_A 103 ----YFIEVFKACGINLD 116 (348)
T ss_dssp ----HHHHHHHHTTCCGG
T ss_pred ----HHHHHHHHhcCCcc
Confidence 34556778898876
No 117
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=65.97 E-value=3.7 Score=51.28 Aligned_cols=56 Identities=23% Similarity=0.173 Sum_probs=34.6
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeecc-CC-CcccccCC-CccC
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDE-KG-AKMSKSVG-NVIS 824 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~-~G-~KMSKS~G-Nvv~ 824 (1281)
+-+|+...|.||.... +.+-+... + +..+=..++.+.++... +| +|||||.+ |.|+
T Consensus 182 ~~ad~vpvG~DQ~~~l~l~Rdla~r--~-n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~ 241 (690)
T 3p0j_A 182 LKADICQLGLDQRKVNMLAREYCDL--I-GRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIF 241 (690)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHH--T-TCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCB
T ss_pred hCCCEEeccccHHHHHHHHHHHHHH--h-CCCCCceEeecCeeecCCCCCcCCCCCCCCCeee
Confidence 5678899999998532 11222211 2 22210145667888877 78 49999998 6674
No 118
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=65.40 E-value=12 Score=43.53 Aligned_cols=78 Identities=17% Similarity=0.126 Sum_probs=46.3
Q ss_pred CCCcEEEEcCCCCCCC-cCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHH
Q psy17125 17 GKPEFILHDGPPYANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKN 95 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG-~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~ 95 (1281)
.++++.+..|+ -||| .|||||..+.. .+.++++.-|..+....| |.| +.... ..+++++ ++
T Consensus 98 ~~~p~~vy~G~-~PTg~~lHLGh~v~~~---~~~~lQ~~~g~~~~i~Ia-D~~------a~l~~---~~~~e~i----~~ 159 (406)
T 3tze_A 98 NNRPFYLYTGR-GPSSKTMHIGHTIPFL---LCKYMQDAFKIRLVIQIT-DDE------KFLWK---SMRLEDA----MA 159 (406)
T ss_dssp TTCCEEEEEEE-CCCSSCCBGGGHHHHH---HHHHHHHHHTCCEEEEEC-HHH------HHHHS---SCCHHHH----HH
T ss_pred cCCCeEEEEee-CCCCCcccHHHHHHHH---HHHHHHHhcCCcEEEEee-ChH------HHcCC---CCCHHHH----HH
Confidence 44567777776 5687 79999977652 344466665877777433 211 11111 1477666 33
Q ss_pred HHHHHHHHHHHHHHHcCceec
Q psy17125 96 FALETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 96 ~~~~~~~~~~~~l~~lgi~~D 116 (1281)
++. .+.+++.++|+..+
T Consensus 160 ~~~----~~~~~~lA~GlDp~ 176 (406)
T 3tze_A 160 YGR----ENIKDIVTLGFDPK 176 (406)
T ss_dssp HHH----HHHHHHHTTTCCGG
T ss_pred HHH----HHHHHHHHcCCCcc
Confidence 343 34566778898776
No 119
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=65.14 E-value=9.6 Score=44.26 Aligned_cols=78 Identities=14% Similarity=0.040 Sum_probs=47.2
Q ss_pred CCCcEEEEcCCCCCCC-cCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHH
Q psy17125 17 GKPEFILHDGPPYANG-TPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKN 95 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~nG-~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~ 95 (1281)
.++++++..|+ -||| .|||||.... ..+.++++.-|..+....|=++ ++... ..+++++ ++
T Consensus 75 ~~~~~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~D~~-------~~l~~---~~~~e~i----~~ 136 (395)
T 3i05_A 75 SGQPFYLYTGR-GPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQMTDDE-------KFYFR---NIPMEQV----EA 136 (395)
T ss_dssp TTCCEEEEEEE-CCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEECHHH-------HHHHS---CCCHHHH----HH
T ss_pred cCCCeEEEEee-cCCCccchHHHHHHH---HHHHHHHHhcCCcEEEEEcchH-------HHhcC---CCCHHHH----HH
Confidence 34556677675 5788 6999998664 3445567766887777643222 12222 1577766 44
Q ss_pred HHHHHHHHHHHHHHHcCceec
Q psy17125 96 FALETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 96 ~~~~~~~~~~~~l~~lgi~~D 116 (1281)
++.+ +.+++.++|+..+
T Consensus 137 ~~~~----~~~~~lA~GlDp~ 153 (395)
T 3i05_A 137 MTTE----NIKDIIAMGFDPE 153 (395)
T ss_dssp HHHH----HHHHHHTTTCCTT
T ss_pred HHHH----HHHHHHHcCCCCC
Confidence 4443 4556677887655
No 120
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=64.55 E-value=4.5 Score=46.09 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=39.5
Q ss_pred CCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy17125 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEF 108 (1281)
Q Consensus 29 ~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l 108 (1281)
-|||.|||||..+.+.. +.+++. |+++.+..+ |-|.+-. . .+++++ ++.+.+ +..++
T Consensus 14 ~PTG~lHLGhy~g~l~~--~~~lQ~--~~~~~~~ia-D~ha~~~-------~---~~~~~~----~~~~~~----~~~~~ 70 (341)
T 3sz3_A 14 QPSGELSIGNYLGALRQ--WQQMQD--DYDCQYCVV-DLHAITV-------R---QDPQAL----HEATLD----ALAIC 70 (341)
T ss_dssp CSSSCCBHHHHHHTGGG--HHHHHH--HSEEEEEEC-HHHHTTS-------C---CCHHHH----HHHHHH----HHHHH
T ss_pred CCCCcccHHHHHHHHHH--HHHHHh--cCeEEEEEe-cceeEcC-------C---CCHHHH----HHHHHH----HHHHH
Confidence 36899999999986632 445555 578776654 3333221 1 366665 333333 35566
Q ss_pred HHcCceec
Q psy17125 109 ESWGVLAD 116 (1281)
Q Consensus 109 ~~lgi~~D 116 (1281)
.+.|+..+
T Consensus 71 lA~GlDp~ 78 (341)
T 3sz3_A 71 LAVGVDPK 78 (341)
T ss_dssp HHTTCCTT
T ss_pred HHcCCChh
Confidence 78899877
No 121
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=63.64 E-value=2.4 Score=48.00 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=40.5
Q ss_pred CCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy17125 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEF 108 (1281)
Q Consensus 29 ~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l 108 (1281)
-|||.|||||..+.+.. +.++++ |+++.+..| |.|++-. ..+++++ ++.+. .+..++
T Consensus 11 ~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~~~----------~~~~~~l----~~~~~----~~~~~~ 67 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAMTS----------SQDGEKL----KQNSL----KAAAAF 67 (322)
T ss_dssp CCSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHTTT----------CCCHHHH----HHHHH----HHHHHH
T ss_pred CCCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeeecC----------CCCHHHH----HHHHH----HHHHHH
Confidence 36899999999986655 566666 999888765 4343211 1256555 33333 334555
Q ss_pred HHcCceec
Q psy17125 109 ESWGVLAD 116 (1281)
Q Consensus 109 ~~lgi~~D 116 (1281)
.+.|+..+
T Consensus 68 lA~Gldp~ 75 (322)
T 3tzl_A 68 LSLGIDPQ 75 (322)
T ss_dssp HHTTCCTT
T ss_pred HHcCCCcc
Confidence 67888655
No 122
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=63.14 E-value=7.3 Score=45.25 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=22.4
Q ss_pred CCCc-CcchhhhhHHHHHHHHHHHHHCCCeeEEecc
Q psy17125 30 ANGT-PHIGHAVNKILKDITLRSNLLQGKRVHYVPG 64 (1281)
Q Consensus 30 ~nG~-lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G 64 (1281)
|||+ |||||.. .+. .+.++++ .|+++++..|
T Consensus 73 PTg~sLHlGhlv-~l~--~l~~lQ~-~G~~~~~lIg 104 (392)
T 1y42_X 73 PTAPSLHVGHLL-PLM--PLFWMYL-EGYKAFTLIG 104 (392)
T ss_dssp CCSSSCBGGGHH-HHH--HHHHHHH-HTCEEEEEEC
T ss_pred CCCCCccHHHHH-HHH--HHHHHHH-cCCcEEEEEc
Confidence 5798 9999987 333 3566665 4898888765
No 123
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=62.96 E-value=1.8 Score=49.46 Aligned_cols=58 Identities=29% Similarity=0.225 Sum_probs=33.8
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHh-cC------CCCCceEEe--eceeecc-CC-CcccccC---CCccC
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVAL-KH------TAPFRNVFL--HGFVVDE-KG-AKMSKSV---GNVIS 824 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l-~~------~~Pf~~v~~--hG~vld~-~G-~KMSKS~---GNvv~ 824 (1281)
+-+|+...|.||.... +.+-+...... .+ ..| ..++. +.++... +| +|||||. +|.|.
T Consensus 142 ~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p-~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~ 214 (341)
T 3sz3_A 142 YGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIP-EPYIPTVNARVMSLQDATKKMSKSDDNRKNVIT 214 (341)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCC-EECCCSCCCCCEETTEEEEECCTTCSCGGGCCB
T ss_pred cCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccccC-hhhhccCcccccCCCCCCCccCCCCCCCCCeee
Confidence 5678899999998644 33333332221 12 123 23333 3455555 46 6999999 78884
No 124
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=62.43 E-value=3.3 Score=48.75 Aligned_cols=52 Identities=27% Similarity=0.306 Sum_probs=30.3
Q ss_pred ceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCC--cccccCCC-ccC
Q psy17125 770 VYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGA--KMSKSVGN-VIS 824 (1281)
Q Consensus 770 l~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~--KMSKS~GN-vv~ 824 (1281)
+...|.||.... .+...++-....|-..++.+.++...+|. |||||.+| .|.
T Consensus 290 ~VPvG~DQ~~hl---el~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~ 344 (451)
T 3foc_A 290 LIASGIEQDPYF---RLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIY 344 (451)
T ss_dssp EEEECTTTHHHH---HHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCB
T ss_pred eeeeecchHHHH---HHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeee
Confidence 445699998532 11112221111122346667888878875 99999988 553
No 125
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=62.09 E-value=15 Score=43.29 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=47.1
Q ss_pred CCCcEEEEcCCCCCC-CcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHH
Q psy17125 17 GKPEFILHDGPPYAN-GTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKN 95 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~n-G~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~ 95 (1281)
.++++++..|+= || |.|||||..... .+.++++.-|..+.+..| .+ + +.... ...+++++ ++
T Consensus 88 ~g~p~~vytG~d-PTagsLHLGH~v~~~---~l~~lQ~~~g~~v~I~Ig-----D~-~-a~~~r--~~lt~E~I----~~ 150 (451)
T 3foc_A 88 KGHPIYIYTGRG-PSSGALHLGHLLPFI---FTKYLQDAFKCYVVIQIT-----DD-E-KFLRN--RSLSYAEV----DS 150 (451)
T ss_dssp TTCCEEEEEEEC-CCSSCCBHHHHHHHH---HHHHHHHHHTCEEEEEEC-----HH-H-HHHHC--TTCCHHHH----HH
T ss_pred cCCCeEEEecCC-CCCCCccHHHHHHHH---HHHHHHHccCceEEEEee-----Cc-H-Hhhcc--cCCCHHHH----HH
Confidence 445677777764 45 899999976654 344567766887777533 33 2 22211 12577766 44
Q ss_pred HHHHHHHHHHHHHHHcCceec
Q psy17125 96 FALETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 96 ~~~~~~~~~~~~l~~lgi~~D 116 (1281)
++.+ +.+++.++|+..+
T Consensus 151 n~~~----~~~~~lA~GlDpe 167 (451)
T 3foc_A 151 YTRE----NIKDIIACGFDPD 167 (451)
T ss_dssp HHHH----HHHHHHTTTCCGG
T ss_pred HHHH----HHHHHHHcCCCCC
Confidence 4443 3556778887655
No 126
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=61.34 E-value=5.1 Score=47.03 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCCc-CcchhhhhHHHHHHHHHHHHHCCCeeEEecccC
Q psy17125 30 ANGT-PHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 66 (1281)
Q Consensus 30 ~nG~-lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D 66 (1281)
|||+ ||+||.. .+. .+.++++ .||++++..|=.
T Consensus 41 PTg~sLHlGh~v-~l~--~~~~lQ~-~G~~~~~lIgd~ 74 (420)
T 1jil_A 41 PTADSLHIGHLL-PFL--TLRRFQE-HGHRPIVLIGGG 74 (420)
T ss_dssp CSSSSCBHHHHH-HHH--HHHHHHH-TTCEEEEEECTT
T ss_pred CCCCCccHHHHH-HHH--HHHHHHH-CCCcEEEEEcCc
Confidence 5788 9999977 333 3556665 599988877643
No 127
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=59.70 E-value=5.2 Score=45.59 Aligned_cols=58 Identities=22% Similarity=0.145 Sum_probs=32.4
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHh-cC---CCCCceEEe-e-ceeecc-CC-CcccccCC---CccC
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVAL-KH---TAPFRNVFL-H-GFVVDE-KG-AKMSKSVG---NVIS 824 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l-~~---~~Pf~~v~~-h-G~vld~-~G-~KMSKS~G---Nvv~ 824 (1281)
+-+|+...|.||.... +.+-+...... .+ ..| ..++. | .++... +| +|||||.+ |.|.
T Consensus 151 ~~ad~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p-~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~ 220 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIP-EPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIE 220 (346)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCC-EECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCB
T ss_pred hCceEEEeccchHHHHHHHHHHHHHhccccCCccccc-chhccCCcccCccCCCCccccCCCCCCCCceec
Confidence 5678899999998644 33333332221 11 123 23332 1 344444 67 59999997 5674
No 128
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=58.92 E-value=6.1 Score=44.50 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=41.5
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHH
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFAL 98 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~ 98 (1281)
+++.+..|+ -|||.||+|| +..+.. +.++++ .|+++.+..|=++ ++ . +...+++++ ++.+
T Consensus 27 ~~~~vy~G~-~PTg~lHlGh-l~~l~~--~~~lQ~-~g~~~~~~i~D~~-a~------~---~~~~~~e~i----~~~~- 86 (314)
T 2zp1_A 27 DEKSAYIGF-EPSGKIHLGH-YLQIKK--MIDLQN-AGFDIIILLADLA-AY------L---NQKGELDEI----RKIG- 86 (314)
T ss_dssp SSEEEEEEE-CCCSSCBHHH-HHHHHH--HHHHHH-TTEEEEEEECHHH-HH------H---TTCCCHHHH----HHHH-
T ss_pred CCCEEEEcc-CCCCCcchhh-HHHHHH--HHHHHH-CCCCEEEEEecce-Ee------c---CCCCCHHHH----HHHH-
Confidence 344444442 2379999999 666654 555555 5898888765221 11 0 111245444 3333
Q ss_pred HHHHHHHHHHHHcCce
Q psy17125 99 ETINTQKAEFESWGVL 114 (1281)
Q Consensus 99 ~~~~~~~~~l~~lgi~ 114 (1281)
..+.+++.++|+.
T Consensus 87 ---~~~~~~~~a~G~d 99 (314)
T 2zp1_A 87 ---DYNKKVFEAMGLK 99 (314)
T ss_dssp ---HHHHHHHHHTTCC
T ss_pred ---HHHHHHHHhcCCC
Confidence 4557778889976
No 129
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=58.40 E-value=4.4 Score=46.14 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=22.4
Q ss_pred CCCcCcchhhhhHHHHHHHHHHHHHCC-CeeEEecc
Q psy17125 30 ANGTPHIGHAVNKILKDITLRSNLLQG-KRVHYVPG 64 (1281)
Q Consensus 30 ~nG~lHiGH~~~~~~~Dv~~R~~r~~G-~~V~~~~G 64 (1281)
|||.|||||..+.+.. +.++++. | +++.+..|
T Consensus 10 PTg~lHlGh~~g~l~~--~~~lQ~~-G~~~~~~~Ia 42 (337)
T 2el7_A 10 PSGEIHIGNYLGAIKQ--WVAIGEK-LGRDAFFCIV 42 (337)
T ss_dssp SCSCCBHHHHHTHHHH--HHHHHHH-HGGGEEEEEC
T ss_pred CCCcccHHHHHHHHHH--HHHHHhc-CCCCEEEEEe
Confidence 5789999999987533 4555554 6 87766555
No 130
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=56.87 E-value=12 Score=44.14 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=25.9
Q ss_pred cEEEEcCCCCCCCc-CcchhhhhHHHHHHHHHHHHHCCCeeEEeccc
Q psy17125 20 EFILHDGPPYANGT-PHIGHAVNKILKDITLRSNLLQGKRVHYVPGW 65 (1281)
Q Consensus 20 ~f~i~~~pP~~nG~-lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~ 65 (1281)
++.+..|+ -|||+ ||+||.. .+. .+.++++ .|+++.+..|=
T Consensus 37 ~~~vy~G~-dPTg~sLHlGh~v-~l~--~l~~lQ~-~G~~~i~lIgD 78 (432)
T 1h3f_A 37 PLTVKLGA-DPTRPDLHLGHAV-VLR--KMRQFQE-LGHKVVLIIGD 78 (432)
T ss_dssp CCEEEEEE-CTTCCSCBHHHHH-HHH--HHHHHHH-TTCEEEEEECC
T ss_pred CcEEEEcc-cCCCCCCchhhHH-HHH--HHHHHHH-CCCCEEEEEcc
Confidence 33444443 35775 9999987 332 3566665 59998887763
No 131
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=56.21 E-value=6.5 Score=44.81 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=37.8
Q ss_pred CCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy17125 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEF 108 (1281)
Q Consensus 29 ~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l 108 (1281)
-|||.|||||..+.+.+ +.+++ .++++.+..+ |.|.+-. . .+++++ ++.+.+ ..+++
T Consensus 23 ~PTG~lHLGh~vg~l~~--~~~lQ--~~~~~~~~ia-D~hA~t~-------~---~~~~~~----~~~~~~----~~~~~ 79 (346)
T 3n9i_A 23 QPSGELTIGNYMGALRQ--WVQMQ--DDYDCIYCIV-DLHAITA-------R---QDPALL----RKRTLD----TLALY 79 (346)
T ss_dssp CSCSCCBHHHHHHTHHH--HHTTT--TTSEEEEEEC-HHHHTTS-------C---CCHHHH----HHHHHH----HHHHH
T ss_pred CCCCcccHHHHHHHHHH--HHHHH--hhCcEEEEEe-cceeecC-------C---CCHHHH----HHHHHH----HHHHH
Confidence 45799999998876522 22333 3688776654 4343221 1 356555 333333 35556
Q ss_pred HHcCceec
Q psy17125 109 ESWGVLAD 116 (1281)
Q Consensus 109 ~~lgi~~D 116 (1281)
.+.|+..+
T Consensus 80 lA~GlDp~ 87 (346)
T 3n9i_A 80 LACGIDPK 87 (346)
T ss_dssp HHHTCCTT
T ss_pred HHcCCCcc
Confidence 67898876
No 132
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=54.50 E-value=22 Score=42.03 Aligned_cols=150 Identities=21% Similarity=0.305 Sum_probs=127.1
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcc
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNV 845 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~ 845 (1281)
.+.|++.+|.|++++|....+..+.++.++ ||.++++|+.+++.+|+|||||+||+|+|.++++
T Consensus 222 ~~~dih~gG~Dl~FpHheneiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~--------------- 285 (462)
T 3tqo_A 222 QPFDIHGGGLDLKFPHHENEIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALK--------------- 285 (462)
T ss_dssp SSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHH---------------
T ss_pred CCeEEEccccccccHHHHhHHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHh---------------
Confidence 488999999999999999999999998888 9999999977777999999999999999999999
Q ss_pred cccccccccccCCCCCchhHHHHHHHhcCCCCCccccCcchhccchHHHHHHHHHHHHHHHhhcCCCCCCCCcCcHHHHH
Q psy17125 846 ISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVY 925 (1281)
Q Consensus 846 ~~~~~~~~~~~~i~~yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~~~kl~n~~r~~~~~l~~~~~~~~~~~~~~d~~ 925 (1281)
+||+|++|||+++..+ .++++|+.+.+..+.+++++++|+++++.. . . .
T Consensus 286 --------------~~g~dalR~~lls~~y-r~~l~fs~~~l~~a~~~l~rl~~~~~~~~~----~----~-~------- 334 (462)
T 3tqo_A 286 --------------ESDVEVLRYFLLSGHY-RNPLSYSKENLENGRLALERFYLALRGLPV----V----N-H------- 334 (462)
T ss_dssp --------------HSCHHHHHHHHHHSCT-TSCEEECHHHHHHHHHHHHHHHHHHTTCCC-------------------
T ss_pred --------------hcChHHhhhhhccCCC-CCCcCcCHHHHHHHHHHHHHHHHHHHHhhh----c----c-c-------
Confidence 9999999999998765 889999999999999999999999876521 1 0 0
Q ss_pred HHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHhhhhHHH
Q psy17125 926 MLKRLCEFQNTMDTLYG-EFQYARASRVLLNFVVNELSAFYF 966 (1281)
Q Consensus 926 il~~l~~~~~~v~~~~e-~~~~~~ai~~i~~f~~~~l~~~Yl 966 (1281)
..+..+...+.++|+ .|+...|+..+++++ ..+ |.++
T Consensus 335 --~~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~-~~~-n~~~ 372 (462)
T 3tqo_A 335 --EKTSSYTDRFYEAMDDDFNTPIAFALLFEMV-REI-NRFR 372 (462)
T ss_dssp -----CHHHHHHHHHHTBTCCHHHHHHHHHHHH-HHH-HHHH
T ss_pred --hhHHHHHHHHHHHHHhccChHHHHHHHHHHH-HHH-hhhh
Confidence 023455667888887 899999999999998 443 4443
No 133
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=54.04 E-value=10 Score=45.32 Aligned_cols=154 Identities=17% Similarity=0.257 Sum_probs=115.3
Q ss_pred CCccceeeccceeeehhhHHHHHHHHhcCCCCCceEEee-ceeeccCCCcccccCCCccChhhhhcccccCcccccccCc
Q psy17125 766 KPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLH-GFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGN 844 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~wf~~~l~~~~~l~~~~Pf~~v~~h-G~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn 844 (1281)
.+.|+|.+|+|++++|....+..+.++.++ ||.++++| |+|. .+|+|||||+||+|+|.++++
T Consensus 252 ~~~DIH~gG~DLifpHheneiAqs~a~~g~-~~~~~w~H~g~v~-~~G~KMSKSlGN~it~~dll~-------------- 315 (501)
T 3sp1_A 252 DALDIHLGGVDHIGVHHINEIAIAECFLNK-KWCDVFVHGEFLI-MDYNKMSKSRGNFITVKDLED-------------- 315 (501)
T ss_dssp TCCCEEEEEGGGTTTHHHHHHHHHHHHHTS-CCCSEEEEECCEE-CC----------CCCHHHHHH--------------
T ss_pred CCceEEeeccccccchHHHHHHHHHHccCC-CCCeEEEEeeeEe-eCCeEccccCCCcCCHHHHHh--------------
Confidence 378999999999999999999999888875 88999999 8987 799999999999999999999
Q ss_pred ccccccccccccCCCC-CchhHHHHHHHhcCCCCCccccCcchhccchHH----HHHHHHHHHHHHHhhcCCCCCCCCcC
Q psy17125 845 VISAHDITQGAKKLPA-YGVDVLRWWVAAHASKDPTVPIGKNILNSSQDD----VQKIRSSLRYLLGVLHNHSESTGSIS 919 (1281)
Q Consensus 845 ~~~~~~~~~~~~~i~~-yGaDalR~~l~~~~~~~~d~~f~~~~l~~~~~~----~~kl~n~~r~~~~~l~~~~~~~~~~~ 919 (1281)
+ ||+|++||||++. ...+|++|+.+.+..+.+. ++||+|+++++.......... ...
T Consensus 316 ---------------~gyg~d~lR~~lls~-~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~--~~~ 377 (501)
T 3sp1_A 316 ---------------QNFSPLDFRYLCLTS-HYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNK--DLK 377 (501)
T ss_dssp ---------------TTCCHHHHHHHHHTS-CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHS--CTT
T ss_pred ---------------cCCCHHHHHHHHHhc-cCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccc--ccc
Confidence 8 9999999999998 5589999999999999888 999999887543211100000 000
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHH
Q psy17125 920 RYVDVYMLKRLCEFQNTMDTLYG-EFQYARASRVLLNFV 957 (1281)
Q Consensus 920 ~~~d~~il~~l~~~~~~v~~~~e-~~~~~~ai~~i~~f~ 957 (1281)
. .+ ...+..+...+.++|+ .|+...|+..+++++
T Consensus 378 ~-~~---~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~ 412 (501)
T 3sp1_A 378 N-FG---FSVEKEYYDSFVEKISFDLNVAQGLALLWEII 412 (501)
T ss_dssp S-CS---SHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHH
T ss_pred c-hh---hhhHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 0 00 2345667788889997 899999999999988
No 134
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=50.11 E-value=9.7 Score=44.01 Aligned_cols=60 Identities=20% Similarity=0.099 Sum_probs=32.1
Q ss_pred CCccceeeccceeeeh-hhHHHHHHHHhcCCCCC---ceEEe--eceeecc-CC-CcccccC---CCccCh
Q psy17125 766 KPAHVYMEGMDQINGW-FMSSLLTSVALKHTAPF---RNVFL--HGFVVDE-KG-AKMSKSV---GNVISA 825 (1281)
Q Consensus 766 ~p~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf---~~v~~--hG~vld~-~G-~KMSKS~---GNvv~p 825 (1281)
+-+|+...|.||.... +.+-+..........+| ..++. +..+... +| +|||||. +|.|..
T Consensus 170 ~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L 240 (388)
T 3prh_A 170 YGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITL 240 (388)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBT
T ss_pred hCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeec
Confidence 5678999999998543 23333332221111111 22221 2233433 33 7999999 888853
No 135
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=49.58 E-value=11 Score=44.14 Aligned_cols=32 Identities=31% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCCc-CcchhhhhHHHHHHHHHHHHHCCCeeEEeccc
Q psy17125 30 ANGT-PHIGHAVNKILKDITLRSNLLQGKRVHYVPGW 65 (1281)
Q Consensus 30 ~nG~-lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~ 65 (1281)
|||+ ||+||.. .+. .+.++++ .||++++..|=
T Consensus 39 PTg~sLHlGh~v-~l~--~l~~lQ~-~G~~~i~lIgd 71 (419)
T 2ts1_A 39 PTADSLHIGHLA-TIL--TMRRFQQ-AGHRPIALVGG 71 (419)
T ss_dssp CSSSSCBGGGHH-HHH--HHHHHHH-TTCEEEEEECT
T ss_pred CCCCCccHHHHH-HHH--HHHHHHH-CCCcEEEEEcC
Confidence 5788 9999977 333 3556654 69998887763
No 136
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=48.27 E-value=11 Score=42.83 Aligned_cols=39 Identities=28% Similarity=0.387 Sum_probs=25.9
Q ss_pred cEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEec
Q psy17125 20 EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVP 63 (1281)
Q Consensus 20 ~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~ 63 (1281)
+.+..-..| ||.|||||..+.+. -+.+++ -.|+++.+..
T Consensus 13 ~~v~~G~~P--TG~lHLGn~~g~l~--~~~~lQ-~~G~~~~~~I 51 (340)
T 2g36_A 13 MRILSGMRP--TGKLHIGHLVGALE--NWVKLQ-EEGNECFYFV 51 (340)
T ss_dssp CEEEEEECC--CSSCBHHHHHTHHH--HHHHHH-HTTCEEEEEE
T ss_pred CeEEEeeCC--CCcccHHhHHHHHH--HHHHHH-HCCCCEEEEE
Confidence 344444444 58999999998653 244444 4689988876
No 137
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=48.01 E-value=6.6 Score=44.86 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=37.2
Q ss_pred CCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17125 30 ANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEFE 109 (1281)
Q Consensus 30 ~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~ 109 (1281)
|||.|||||..+.+.. +.+++. |+++.+..| |.|++-.. .+++++ ++.+. .+.+++.
T Consensus 13 PTG~lHLGn~vg~l~~--~~~lQ~--~~~~~~~Ia-D~ha~~~~----------~d~~~i----~~~~~----~~~~~~l 69 (348)
T 2yy5_A 13 ASGKQHLGNYLGVMQS--LIELQE--QCQLFVFVA-DLHSITVD----------FQPQAL----KQNNF----DLVRTLL 69 (348)
T ss_dssp CCTTCBHHHHHHTGGG--HHHHHH--HSEEEEEEC-HHHHTTSC----------CCHHHH----HHHHH----HHHHHHH
T ss_pred CCCcccHHHHHHHHHH--HHHHHh--CCcEEEEEc-ChhhccCC----------CCHHHH----HHHHH----HHHHHHH
Confidence 5699999999987743 345565 788776554 22222110 256555 33333 3345566
Q ss_pred HcCceec
Q psy17125 110 SWGVLAD 116 (1281)
Q Consensus 110 ~lgi~~D 116 (1281)
+.|+..+
T Consensus 70 A~Gldp~ 76 (348)
T 2yy5_A 70 AVGLDPQ 76 (348)
T ss_dssp HTTCCTT
T ss_pred HhCCChh
Confidence 7887765
No 138
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=46.52 E-value=12 Score=42.23 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=21.7
Q ss_pred CCCc-CcchhhhhHHHHHHHHHHHHHCCCeeEEecc
Q psy17125 30 ANGT-PHIGHAVNKILKDITLRSNLLQGKRVHYVPG 64 (1281)
Q Consensus 30 ~nG~-lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G 64 (1281)
|||+ |||||.. .+. .+.++++ .|+++++..|
T Consensus 42 PTg~slHlGh~l-~l~--~~~~lQ~-~g~~~~~~i~ 73 (322)
T 2yxn_A 42 PTADSLHLGHLV-PLL--CLKRFQQ-AGHKPVALVG 73 (322)
T ss_dssp CSSSSCBHHHHH-HHH--HHHHHHH-TTCEEEEEEC
T ss_pred CCCCcccHHHHH-HHH--HHHHHHH-cCCcEEEEEc
Confidence 5788 9999977 232 3555554 4898888766
No 139
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=46.01 E-value=13 Score=43.49 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCCCc-CcchhhhhHHHHHHHHHHHHHCCCeeEEecc
Q psy17125 29 YANGT-PHIGHAVNKILKDITLRSNLLQGKRVHYVPG 64 (1281)
Q Consensus 29 ~~nG~-lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G 64 (1281)
-|||+ ||||| +..+.. +.++++ .|+++++..|
T Consensus 40 dPTg~sLHLGh-lv~l~~--l~~lQ~-~G~~~i~lIg 72 (432)
T 2jan_A 40 DPTAPSLHAGH-LVPLLT--LRRFQR-AGHRPIVLAG 72 (432)
T ss_dssp CCSSSSCBGGG-HHHHHH--HHHHHH-TTCEEEEEEC
T ss_pred CCCCCCcCHHH-HHHHHH--HHHHHH-CCCcEEEEEc
Confidence 35785 99999 444443 666665 5999988765
No 140
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=44.01 E-value=13 Score=43.45 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=104.2
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHH
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFAL 98 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~ 98 (1281)
.++|++ .|+|||++||||+|+++++|+++||+|++||+|.+++|+|+||.+|+.+|.+++ .++ +++++
T Consensus 40 v~~y~~--gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g---~~~-------~~~~~ 107 (414)
T 3c8z_A 40 ATMYVC--GITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDG---IDW-------RTLGD 107 (414)
T ss_dssp EEEEEC--CCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHT---CCH-------HHHHH
T ss_pred ceEEeC--CCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcC---CCH-------HHHHH
Confidence 345555 677889999999999999999999999999999999999999999999999886 677 57799
Q ss_pred HHHHHHHHHHHHcCce-eccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEeeCc
Q psy17125 99 ETINTQKAEFESWGVL-ADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLK 151 (1281)
Q Consensus 99 ~~~~~~~~~l~~lgi~-~DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~ 151 (1281)
++++.+++++++|||+ +| .+.+|++ |.+.++++|.+|+++|++|++..
T Consensus 108 ~~~~~~~~~~~~Lgi~~~d---~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~ 156 (414)
T 3c8z_A 108 RETQLFREDMAALRVLPPH---DYVAATD--AIAEVVEMVEKLLASGAAYIVED 156 (414)
T ss_dssp HHHHHHHHHHHHTTCCCCS---EEEEGGG--CHHHHHHHHHHHHHHTSEEECSC
T ss_pred HHHHHHHHHHHHcCCCCCc---ceecccc--hHHHHHHHHHHHHHCCCEEeccC
Confidence 9999999999999999 87 4667765 88999999999999999999874
No 141
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=43.97 E-value=35 Score=40.66 Aligned_cols=47 Identities=23% Similarity=0.219 Sum_probs=36.6
Q ss_pred eEEeeceeeccCCCcccccCCCccChhhhhcccccCcccccccCcccccccccccccCCCCCchhHHHHHHHhcCC
Q psy17125 800 NVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHAS 875 (1281)
Q Consensus 800 ~v~~hG~vld~~G~KMSKS~GNvv~p~dli~g~~~~~~msks~gn~~~~~~~~~~~~~i~~yGaDalR~~l~~~~~ 875 (1281)
....+.++++.+|+||||..|. ++..++.+ .-|-+++++-||+..+.
T Consensus 250 ~f~HlpLi~~~~g~KLSKR~g~-~sl~~~r~----------------------------~G~~peal~n~l~~lG~ 296 (490)
T 4g6z_A 250 VYAHLPTVLNEQGEKMSKRHGA-MSVMGYRD----------------------------AGYLPEAVLNYLARLGW 296 (490)
T ss_dssp EEEEECCEECTTSSBCCTTTTC-CBHHHHHH----------------------------TTCCHHHHHHHHHTSSB
T ss_pred eEEEecceeCCCCCcccCCCCC-cCHHHHHH----------------------------CCCCHHHHHHHHHHhCC
Confidence 4555688899999999999986 45666655 05779999999998765
No 142
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=43.65 E-value=13 Score=42.90 Aligned_cols=58 Identities=22% Similarity=0.064 Sum_probs=32.8
Q ss_pred Cccceeeccceeeeh-hhHHHHHHHHhcCCCCCceEEeeceeeccCCCcccccCCC-ccC
Q psy17125 767 PAHVYMEGMDQINGW-FMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGN-VIS 824 (1281)
Q Consensus 767 p~dl~~~G~Dii~~w-f~~~l~~~~~l~~~~Pf~~v~~hG~vld~~G~KMSKS~GN-vv~ 824 (1281)
.+.+.--|.||.... +.+-+.....-....|......+.++-..+|.|||||..| .|.
T Consensus 208 ~a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S~~ns~I~ 267 (372)
T 3a04_A 208 RHVVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGRKMSSSRPDSTIF 267 (372)
T ss_dssp CCEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEECCCBCTTSSBCCTTSGGGSCB
T ss_pred cceecccchhhHHHHHHHHHHHHHhcCcccccChhhhhhcccCCCCCCccCCCCCCcccc
Confidence 344555699998532 2333332221111233235666777767789999999855 553
No 143
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=41.34 E-value=10 Score=43.37 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=35.6
Q ss_pred CCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17125 30 ANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEFE 109 (1281)
Q Consensus 30 ~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~ 109 (1281)
|||.|||||..+.+.. +.++++. +++.+..| |.|++-.. . .+++++ ++.+. .+.+++.
T Consensus 31 PTG~lHLGn~~g~l~~--~~~lQ~~--~~~~~~Ia-D~ha~~~~------~---~~~e~i----~~~~~----~~~~~~l 88 (351)
T 1yi8_B 31 PTGALHLGHLAGSLQN--RVRLQDE--AELFVLLA-DVQALTDH------F---DRPEQV----RENVL----AVALDYL 88 (351)
T ss_dssp CSSCCBHHHHHHTHHH--HHHHTSS--SEEEEEEC-HHHHHHHH------T---TCHHHH----HHHHH----HHHHHHH
T ss_pred CCCCccHHHHHHHHHH--HHHHHHh--CCeEEEEe-cchhhcCC------C---CCHHHH----HHHHH----HHHHHHH
Confidence 3799999999986532 3344433 77766543 22222111 1 467666 33333 3355667
Q ss_pred HcCceec
Q psy17125 110 SWGVLAD 116 (1281)
Q Consensus 110 ~lgi~~D 116 (1281)
++|+..+
T Consensus 89 a~Gldp~ 95 (351)
T 1yi8_B 89 AAGLDPQ 95 (351)
T ss_dssp HHTCCTT
T ss_pred HhCCChh
Confidence 7887543
No 144
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=40.79 E-value=11 Score=43.74 Aligned_cols=76 Identities=13% Similarity=0.244 Sum_probs=43.0
Q ss_pred CCCcEE----EEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHH
Q psy17125 17 GKPEFI----LHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKK 92 (1281)
Q Consensus 17 ~~~~f~----i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~ 92 (1281)
+.++|+ |..|. -|||.|||||..+.+.. +.+++ .|++|.+..+ |-|.+-. . .+++++
T Consensus 28 g~~p~~m~~ri~sG~-~PTG~lHLGhyvGal~~--~~~LQ--~~~~~~~~Ia-D~hAlt~-------~---~~~~~l--- 88 (388)
T 3prh_A 28 GIDPFTMKQTIFSGI-QPSGSVTLGNYIGAMKQ--FVELQ--HDYNSYFCIV-DQHAITV-------P---QDRLEL--- 88 (388)
T ss_dssp -------CCEEEEEE-CCCSCCBHHHHHHTHHH--HHHTT--TTSEEEEEEC-HHHHTTS-------C---CCHHHH---
T ss_pred CCCCcccCCeEEEee-CCCCcchHHHHHHHHHH--HHHHH--ccCcEEEEEe-cceeeec-------C---CCHHHH---
Confidence 435666 66665 56899999999887653 23333 3999877654 4443221 1 366655
Q ss_pred HHHHHHHHHHHHHHHHHHcCceec
Q psy17125 93 AKNFALETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 93 ~~~~~~~~~~~~~~~l~~lgi~~D 116 (1281)
++.+. ....++.+.|+..+
T Consensus 89 -r~~~~----~~aa~~lA~GlDp~ 107 (388)
T 3prh_A 89 -RKNIR----NLAALYLAVGLDPE 107 (388)
T ss_dssp -HHHHH----HHHHHHHHTTCCTT
T ss_pred -HHHHH----HHHHHHHHhCCChh
Confidence 33333 34556677898876
No 145
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=40.48 E-value=27 Score=41.06 Aligned_cols=79 Identities=19% Similarity=0.076 Sum_probs=46.2
Q ss_pred CCCCcEEEEcCCCCCC-CcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHH
Q psy17125 16 NGKPEFILHDGPPYAN-GTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAK 94 (1281)
Q Consensus 16 ~~~~~f~i~~~pP~~n-G~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~ 94 (1281)
..++++.+..|+= || |.|||||....+. +.++++..|+++.+..|=.+ |+ .++..+++++ +
T Consensus 104 ~~~~~~~vy~G~d-PTag~LHLGh~v~~~~---~~~lQ~~~G~~~iilIgD~t-a~---------igd~lt~e~i----~ 165 (437)
T 1r6u_A 104 ENKKPFYLYTGRG-PSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTDDE-KY---------LWKDLTLDQA----Y 165 (437)
T ss_dssp TTTCCEEEEEEEC-CCSSCCBHHHHHHHHH---HHHHHHHHTCCEEEEECHHH-HH---------HHSSCCHHHH----H
T ss_pred hcCCCcEEEEccc-CCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEecce-ee---------ecCCCCHHHH----H
Confidence 3445677776763 45 8999999987653 33566546888777665321 11 0112566555 3
Q ss_pred HHHHHHHHHHHHHHHHcCceec
Q psy17125 95 NFALETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 95 ~~~~~~~~~~~~~l~~lgi~~D 116 (1281)
+++.+ +.+++.++|+..+
T Consensus 166 ~n~~~----~~~~~lA~GlDp~ 183 (437)
T 1r6u_A 166 GDAVE----NAKDIIACGFDIN 183 (437)
T ss_dssp HHHHH----HHHHHHTTTCCGG
T ss_pred HHHHH----HHHHHHHhCCCcc
Confidence 33333 3455667887765
No 146
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=39.55 E-value=25 Score=41.88 Aligned_cols=78 Identities=19% Similarity=0.094 Sum_probs=45.3
Q ss_pred CCCcEEEEcCCCCCC-CcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHH
Q psy17125 17 GKPEFILHDGPPYAN-GTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKN 95 (1281)
Q Consensus 17 ~~~~f~i~~~pP~~n-G~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~ 95 (1281)
.++++++..|+= || |.|||||..+.+. ..++++-.|+++.+..|=.+ |+ . ++.++++++ ++
T Consensus 152 ~~~~~~vy~G~d-PTag~LHLGh~v~~~~---~~~lQ~~~g~~~iilI~D~~-a~------i---gd~lt~e~i----~~ 213 (477)
T 1r6t_A 152 NKKPFYLYTGRG-PSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTDDE-KY------L---WKDLTLDQA----YG 213 (477)
T ss_dssp TTCCEEEEEEEC-CCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEECHHH-HH------H---HSSCCHHHH----HH
T ss_pred cCCCcEEEEccc-CCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEecce-ee------e---cCCCCHHHH----HH
Confidence 344566666663 45 8999999988653 33556546888777665322 11 0 012466554 33
Q ss_pred HHHHHHHHHHHHHHHcCceec
Q psy17125 96 FALETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 96 ~~~~~~~~~~~~l~~lgi~~D 116 (1281)
++.+ +.+++.++|+..+
T Consensus 214 n~~~----~~~~~lA~GlDp~ 230 (477)
T 1r6t_A 214 DAVE----NAKDIIACGFDIN 230 (477)
T ss_dssp HHHH----HHHHHHTTCCCTT
T ss_pred HHHH----HHHHHHHhCCCCC
Confidence 4433 3555667887655
No 147
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=37.09 E-value=21 Score=41.97 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=43.8
Q ss_pred CcEEEEcCCCCCC-CcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHH
Q psy17125 19 PEFILHDGPPYAN-GTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFA 97 (1281)
Q Consensus 19 ~~f~i~~~pP~~n-G~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~ 97 (1281)
+++++..|+= || |.|||||....+. +.++++..|+++.+..| |.|+. . +....+++++ ++++
T Consensus 101 ~~~~vy~G~d-PTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~-D~ta~------l--~~~~~t~e~i----~~~~ 163 (432)
T 2ip1_A 101 KPFFLYTGRG-PSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT-DDEKF------L--FKHKLTINDV----KNFA 163 (432)
T ss_dssp CCCEEEEEEC-CCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC-HHHHH------H--HCTTCCHHHH----HHHH
T ss_pred CCeEEEEeec-CCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe-cccce------e--CCCCCCHHHH----HHHH
Confidence 3455555552 45 8999999886553 34566657898888777 22211 1 1001455544 4444
Q ss_pred HHHHHHHHHHHHHcCceec
Q psy17125 98 LETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 98 ~~~~~~~~~~l~~lgi~~D 116 (1281)
.++ .+++.++|+..+
T Consensus 164 ~~~----~~~~lA~GlDp~ 178 (432)
T 2ip1_A 164 REN----AKDIIAVGFDPK 178 (432)
T ss_dssp HHH----HHHHHTTTCCGG
T ss_pred HHH----HHHHHHhCCCCC
Confidence 433 455667787765
No 148
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=36.30 E-value=23 Score=40.76 Aligned_cols=73 Identities=19% Similarity=0.123 Sum_probs=39.1
Q ss_pred EEcCCCCCCCcCcchhhhhHHHHH-HHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Q psy17125 23 LHDGPPYANGTPHIGHAVNKILKD-ITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETI 101 (1281)
Q Consensus 23 i~~~pP~~nG~lHiGH~~~~~~~D-v~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~~~~~ 101 (1281)
+..|+ -|||.||+|| .++.= .+.++++ .|+.|.+..| |-|++-. ...+ .+++++ ++.+.
T Consensus 59 iy~G~-~PTg~lHlG~---gvl~~~~~~~lQ~-~G~~~~~lIa-D~ha~i~----d~~~---~~~~~i----~~~~~--- 118 (373)
T 3vgj_A 59 CYDGF-EPSGRMHIAQ---GLLKSIIVNKLTS-NGCTFIFWIA-DWFAHLN----NKMS---GDLKKI----KKVGS--- 118 (373)
T ss_dssp EEEEE-CCCSSCBHHH---HHHHHHHHHHHHT-TTCEEEEEEC-HHHHHHT----TGGG---GCHHHH----HHHHH---
T ss_pred EEeCC-CCCCCceehh---hHHHHHHHHHHHH-CCCcEEEEEe-cceeEec----CCCC---CCHHHH----HHHHH---
Confidence 44443 3568999999 23332 2455554 5999888766 3343210 0111 244444 23332
Q ss_pred HHHHHHHHHcCceec
Q psy17125 102 NTQKAEFESWGVLAD 116 (1281)
Q Consensus 102 ~~~~~~l~~lgi~~D 116 (1281)
.+.+.+.++|+..+
T Consensus 119 -~~~~~~~a~G~dp~ 132 (373)
T 3vgj_A 119 -YFIEVWKSCGMNME 132 (373)
T ss_dssp -HHHHHHHHTTCCST
T ss_pred -HHHHHHHHcCCChh
Confidence 23467888998765
No 149
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=31.76 E-value=25 Score=43.90 Aligned_cols=77 Identities=18% Similarity=0.127 Sum_probs=43.3
Q ss_pred CcEEEEcCCCCCCCcCcchhhhhHHHHH-HHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHH
Q psy17125 19 PEFILHDGPPYANGTPHIGHAVNKILKD-ITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFA 97 (1281)
Q Consensus 19 ~~f~i~~~pP~~nG~lHiGH~~~~~~~D-v~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~ 97 (1281)
+++.+..|+ -|||.||||| .++.- .+.++++ .|++|.+..| |-|++-.. +.+ .+++++ ++.+
T Consensus 39 ~~~~vy~G~-~PTg~lHLG~---~v~~~~~~~~lQ~-~G~~~~~lIa-D~ha~~~d----~~~---~~~e~i----~~~~ 101 (690)
T 3p0j_A 39 PLIRCYDGF-EPSGRMHIAQ---GIFKAVNVNKCTA-AGCEFVFWVA-DWFALMND----KVG---GELEKI----RIVG 101 (690)
T ss_dssp TTEEEEEEE-CCCSCCBHHH---HHHHHHHHHHHHH-TTEEEEEEEC-CGGGGGGC----TTT---THHHHH----HHHH
T ss_pred CCceEEeee-cCCCcchhHh---hHHHHHHHHHHHH-CCCcEEEEEe-eeEEEecC----CCc---chHHHH----HHHH
Confidence 345566565 4678999999 22222 2455555 5999888776 55554211 011 233333 3333
Q ss_pred HHHHHHHHHHHHHcCceec
Q psy17125 98 LETINTQKAEFESWGVLAD 116 (1281)
Q Consensus 98 ~~~~~~~~~~l~~lgi~~D 116 (1281)
. .+.+++.++|+..+
T Consensus 102 ~----~~~~~~lA~GlDp~ 116 (690)
T 3p0j_A 102 R----YLIEVWKAAGMDMD 116 (690)
T ss_dssp H----HHHHHHHHTTCCGG
T ss_pred H----HHHHHHHHcCCChH
Confidence 2 33556888998766
No 150
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=28.61 E-value=14 Score=43.82 Aligned_cols=125 Identities=15% Similarity=0.088 Sum_probs=110.3
Q ss_pred CCcEEEEcCCCCCCCcCcchhhhhHHHHHHHHHHHHHCCCeeEEecccCCCCchHHHHHHHhcccCCCHHHHHHHHHHHH
Q psy17125 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFA 97 (1281)
Q Consensus 18 ~~~f~i~~~pP~~nG~lHiGH~~~~~~~Dv~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~e~~~~~~~~~ 97 (1281)
+.++|++ -|+|+|++||||+|+++++|+++||+|++||+|.++.|+|++|.+|..+|.+++ .++ ++++
T Consensus 22 ~v~~yv~--gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g---~~~-------~~~~ 89 (461)
T 1li5_A 22 EVGMYVC--GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENG---ESF-------VAMV 89 (461)
T ss_dssp EEEEEEC--CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTT---CCH-------HHHH
T ss_pred CeeEEEc--CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcC---CCH-------HHHH
Confidence 3456666 566669999999999999999999999999999999999999999999999886 677 6679
Q ss_pred HHHHHHHHHHHHHcCcee-ccCCCeeecCCHHHHHHHHHHHHHHHhCCcEEee-CcceeecCCc
Q psy17125 98 LETINTQKAEFESWGVLA-DWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD-LKPVYWSPSS 159 (1281)
Q Consensus 98 ~~~~~~~~~~l~~lgi~~-DW~R~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~-~~~v~w~p~~ 159 (1281)
+++++.+++++++|||.+ | .+.+|++ |.+.+++++.+|.++|++|.+ .+.|+||+.+
T Consensus 90 ~~~~~~f~~~~~~LgI~~~d---~~~r~t~--~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~ 148 (461)
T 1li5_A 90 DRMIAEMHKDFDALNILRPD---MEPRATH--HIAEIIELTEQLIAKGHAYVADNGDVMFDVPT 148 (461)
T ss_dssp HHHHHHHHHHHHHTTCCCCS---BCCBGGG--CHHHHHHHHHHHHHTTSEEECTTSCEEECGGG
T ss_pred HHHHHHHHHHHHHcCCCCCc---ccccccc--hHHHHHHHHHHHHHCCCEEEecCCCEEEeccc
Confidence 999999999999999997 6 3445554 889999999999999999999 8999999763
Done!