RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17125
(1281 letters)
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 607 bits (1568), Expect = 0.0
Identities = 238/618 (38%), Positives = 341/618 (55%), Gaps = 57/618 (9%)
Query: 417 GTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAF 476
G+ALAE+E+EY D S SIY+ + V L D +IWTTTPW+LPANQ IA
Sbjct: 192 GSALAEAEVEYH-DKTSPSIYVAFPV--VDGKLAAAFKDASLVIWTTTPWTLPANQAIAV 248
Query: 477 NPALEYSVASVKGANVIVAKCLVENLKWTFQ-TDIDVVCDFPGQYLQDITYIHPINKEQR 535
+P +Y + V+G +IVAK LVE++ F D +V+ F G+ L+ + HP R
Sbjct: 249 HPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPFYD--R 306
Query: 536 DLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEG 595
D ++ V+ GTGLVH AP HG+DD+++ + VLN + + G+Y+ +A P G
Sbjct: 307 DSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEA-PLFAG 365
Query: 596 LNILGDGKDQVL-HLVEPDVLW-TENYQHSYPYDWRTKKPVILKASQQWFI--DTERIKP 651
L + +++ L E L E HSYP+ WRTKKPVI +A+ QWFI D + ++
Sbjct: 366 LFVF-KANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLRE 424
Query: 652 EALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYDGDT--IIVNEANI 709
+AL +E+V ++P K + + RP WCISRQR WGVPIP+FY +T + I
Sbjct: 425 QALKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELI 484
Query: 710 KHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDK--- 766
+H L ++ G D W+ L ++LL D K DILD+WFDSG S + VL+ +
Sbjct: 485 EHVAKLFEKEGIDAWFELDAKELL--PDEADEYEKETDILDVWFDSGSSHAAVLEQRPEL 542
Query: 767 --PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVIS 824
PA +Y+EG DQ GWF SSLLTSVA + AP++ V HGF VD KG KMSKS+GNVI
Sbjct: 543 GYPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVID 602
Query: 825 AHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAA-HASKDPTVPIG 883
D+ + YG D+LR WVA+ S D V I
Sbjct: 603 PQDVIK-----------------------------KYGADILRLWVASTDYSGD--VRIS 631
Query: 884 KNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRY----VDVYMLKRLCEFQNTMDT 939
IL + ++IR++LR+LLG L++ + ++ +D + L RL E Q +
Sbjct: 632 DEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILE 691
Query: 940 LYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLR 999
Y + + + + L NF +LSAFY ++KDRLY D+ + AR S L++I L+R
Sbjct: 692 AYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVR 751
Query: 1000 TVAPIMPHLAEEVYSHLP 1017
+API+ AEE++ +LP
Sbjct: 752 WLAPILSFTAEEIWQYLP 769
Score = 474 bits (1222), Expect = e-149
Identities = 180/399 (45%), Positives = 242/399 (60%), Gaps = 16/399 (4%)
Query: 7 LYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 66
LY REA GKP+FILHDGPPYANG HIGHA+NKILKDI ++S + G YVPGWD
Sbjct: 37 LYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWD 96
Query: 67 CHGLPIEL---KAITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYH 123
CHGLPIEL K + K K LS + RKK + +ALE ++ Q+ +F+ GVL DW+ N Y
Sbjct: 97 CHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWD-NPYL 155
Query: 124 TFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIYLKI 183
T D +Y N + + K+ Y+Y+ LKPVYW P +ALAE+E+EY D S SIY+
Sbjct: 156 TMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYH-DKTSPSIYVAF 214
Query: 184 KLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVE 243
+ V L D +IWTTTPW+LPANQ IA +P +Y + V+G +IVAK LVE
Sbjct: 215 PV--VDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVE 272
Query: 244 SLKWTFQ-TDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPA 302
S+ F D EV+ F G+ L+ + HP RD ++ V+ GTGLVH AP
Sbjct: 273 SVLERFGWEDYEVLATFKGKELEGLVAQHPFYD--RDSPVILGDHVTLDAGTGLVHTAPG 330
Query: 303 HGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVL-HLVEPDVLW-T 360
HG+DD+++ + VLN + + G+Y+ +A P GL + +++ L E L
Sbjct: 331 HGEDDYVVGQKYGLEVLNPVDDDGRYTEEA-PLFAGLFVF-KANPKIIEKLEEKGALLKE 388
Query: 361 ENYQHSYPYDWRTKKPVILKASQQWFI--DTERIKPEAL 397
E HSYP+ WRTKKPVI +A+ QWFI D + ++ +AL
Sbjct: 389 EKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQAL 427
Score = 172 bits (439), Expect = 9e-44
Identities = 63/164 (38%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 1106 LNLITNQGKYSPDAGPGLEGLNILGEGKDQVL-HLVEPDVLW-TENYQHSYPYDWRTKKP 1163
LN + + G+Y+ +A P GL + + +++ L E L E HSYP+ WRTKKP
Sbjct: 347 LNPVDDDGRYTEEA-PLFAGLFVF-KANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKP 404
Query: 1164 VILKASQQWFI--DTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGV 1221
VI +A+ QWFI D + ++ +AL +E V ++P K + + RP WCISRQR WGV
Sbjct: 405 VIFRATPQWFISMDKKGLREQALKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGV 464
Query: 1222 PIPVFYDGDT--IIVNEANIKHFCTLIDEHGPDFWWSLPVEQLL 1263
PIP+FY +T + I+H L ++ G D W+ L ++LL
Sbjct: 465 PIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELL 508
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 565 bits (1458), Expect = 0.0
Identities = 221/624 (35%), Positives = 333/624 (53%), Gaps = 62/624 (9%)
Query: 417 GTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAF 476
TALAE+E+EY D SIY+K + + + +IWTTTPW+LPAN IA
Sbjct: 195 ETALAEAEVEYG-DVKDPSIYVKFPVKDE-----GLDENAYLVIWTTTPWTLPANLAIAV 248
Query: 477 NPALEYSVASVKGANVIVAKCLVENLKWTFQ-TDIDVVCDFPGQYLQDITYIHPINKEQ- 534
+P L+Y + V G +I+AK LVE++ D +V+ F G L+ + Y HP
Sbjct: 249 HPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVY 308
Query: 535 -RDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKI-PVLNLITNQGKYSPDAGPG 592
R ++ V+ GTGLVH AP HG++D+ + + VLN + + G+Y+ +A P
Sbjct: 309 DRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEA-PK 367
Query: 593 LEGLNILGDGKDQVLHLVEPD-VLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKP 651
EGL + K + L E +L +E +HSYP+ WRTK P+I +A+ QWF+ ++++
Sbjct: 368 YEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRD 427
Query: 652 EALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD---GDTIIVNEAN 708
+ L + +VN+VP+ K + + RP WCISRQR WGVPIPV+Y G+ +++ E
Sbjct: 428 KMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEEL 487
Query: 709 IKHFCTLIDEHGPDFWWSLSVEQLLNTSDVN-SNVTKSNDILDIWFDSGISWSHVLKDKP 767
+ L++E G D W +++LL + + D+LD+WFDSG + VL +
Sbjct: 488 EELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRE 547
Query: 768 --------AHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSV 819
A Y+EG DQ GWF SSLLTS AL AP++NV HGFV+DEKG KMSKS+
Sbjct: 548 NLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSL 607
Query: 820 GNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPT 879
GNV+ D+ YG D+LR WV AS D
Sbjct: 608 GNVVDPQDVID-----------------------------KYGADILRLWV---ASSDYW 635
Query: 880 --VPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSIS----RYVDVYMLKRLCEF 933
+ IL ++ +KIR++ R+LLG L + ++ R +D ++L RL
Sbjct: 636 EDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSL 695
Query: 934 QNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNI 993
+ Y + + + R L+NFV +LS +Y ++KDRLY ++ + R + TL++I
Sbjct: 696 VKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHI 755
Query: 994 FHVLLRTVAPIMPHLAEEVYSHLP 1017
L+R +API+P AEE++ +LP
Sbjct: 756 LKALVRLLAPILPFTAEEIWQNLP 779
Score = 450 bits (1161), Expect = e-140
Identities = 172/404 (42%), Positives = 236/404 (58%), Gaps = 20/404 (4%)
Query: 6 ELYSWQREALN-GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 64
++Y RE N GKP+F+LHDGPPYANG HIGHA+NKILKDI +R +QG V YVPG
Sbjct: 35 DIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPG 94
Query: 65 WDCHGLPIELKA-----ITSKDKL-LSPLDIRKKAKNFALETINTQKAEFESWGVLADWE 118
WDCHGLPIELK I KD + R+K + FALE ++ QK +F+ GV DWE
Sbjct: 95 WDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWE 154
Query: 119 HNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKS 178
N Y T D Y ++ F LY++ +YR KPV WSP TALAE+E+EY D S
Sbjct: 155 -NPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYG-DVKDPS 212
Query: 179 IYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVA 238
IY+K + + + +IWTTTPW+LPAN IA +P L+Y + V G +I+A
Sbjct: 213 IYVKFPVKDE-----GLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILA 267
Query: 239 KCLVESLKWTFQ-TDIEVVCDFPGQYLQDITYIHPINKEQ--RDLKLLPAGFVSSSKGTG 295
K LVES+ D EV+ F G L+ + Y HP R ++ V+ GTG
Sbjct: 268 KALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTG 327
Query: 296 LVHCAPAHGQDDFLLALAEKI-PVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVE 354
LVH AP HG++D+ + + VLN + + G+Y+ +A P EGL + K + L E
Sbjct: 328 LVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEA-PKYEGLFVKDANKKIIEDLKE 386
Query: 355 PD-VLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 397
+L +E +HSYP+ WRTK P+I +A+ QWF+ ++++ + L
Sbjct: 387 KGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKML 430
Score = 163 bits (416), Expect = 6e-41
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 5/165 (3%)
Query: 1106 LNLITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPD-VLWTENYQHSYPYDWRTKKPV 1164
LN + + G+Y+ +A P EGL + K + L E +L +E +HSYP+ WRTK P+
Sbjct: 352 LNPVDDNGRYTEEA-PKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPL 410
Query: 1165 ILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIP 1224
I +A+ QWF+ ++++ + L + VN+VP+ K + + RP WCISRQR WGVPIP
Sbjct: 411 IYRATPQWFVSVDKLRDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIP 470
Query: 1225 VFYD---GDTIIVNEANIKHFCTLIDEHGPDFWWSLPVEQLLNTS 1266
V+Y G+ +++ E + L++E G D W +++LL
Sbjct: 471 VWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPC 515
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 543 bits (1401), Expect = e-175
Identities = 254/649 (39%), Positives = 355/649 (54%), Gaps = 76/649 (11%)
Query: 417 GTALAESELEYKPDHISKSIYLKIKLNQVP---AHLLEGATDLHAL-IWTTTPWSLPANQ 472
TALAE+ELEY H+SKSIY+ + LE +L IWTTTPW++PAN
Sbjct: 176 RTALAEAELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANA 235
Query: 473 FIAFNPALEYSVASVKGAN-------------------------VIVAKCLVENLKWTFQ 507
+A N L+YSV V+ + +IVA LV L+ +
Sbjct: 236 AVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWG 295
Query: 508 TDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAG-FVSSSKGTGLVHCAPAHGQDDFL 566
+ V+ FPG L+ YIHP+ R+ ++ G ++++ GTGLVH AP HGQ+D++
Sbjct: 296 VKLVVLKTFPGSDLEGCRYIHPLYN--RESPVVIGGDYITTESGTGLVHTAPGHGQEDYI 353
Query: 567 LALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVL-HLVEPDVL-WTENYQHSY 624
L +P+L+ + + GK++ +AG GL++LG+G V+ L E L E Y H Y
Sbjct: 354 TGLKYGLPLLSPVDDAGKFTEEAGQ-FSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKY 412
Query: 625 PYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCIS 684
PYDWRTKKP I +A++QWF E + AL +++V ++P + +R ++ R WCIS
Sbjct: 413 PYDWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVKWIPAQGENRIRAMVSGRSDWCIS 472
Query: 685 RQRVWGVPIPVFYDGDT--IIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTS--DVNS 740
RQR WGVPIPVFY +T ++NE I H +++ + G D WW + VE LL D S
Sbjct: 473 RQRTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKAS 532
Query: 741 NVTKSNDILDIWFDSGISWSHVLKDK-----PAHVYMEGMDQINGWFMSSLLTSVALKHT 795
+ K D +D+WFDSG SW+ VL + PA +Y+EG DQ GWF SSLLTSVA K
Sbjct: 533 DYEKGTDTMDVWFDSGSSWAGVLGSREGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGK 592
Query: 796 APFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGA 855
AP+++V HGFV+DEKG KMSKS+GNV+ + +G K
Sbjct: 593 APYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKN--------------------Q 632
Query: 856 KKLPAYGVDVLRWWVAAHASKDPT--VPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSE 913
K+ PAYG DVLR WV AS D T V IG IL D +K+R +LRYLLG LH+ +
Sbjct: 633 KQEPAYGADVLRLWV---ASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDW-K 688
Query: 914 STGSISRY-----VDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTL 968
++ Y +D Y L +L N ++ Y +Q+ + ++L F + +LS FY +
Sbjct: 689 PDNAVP-YEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDV 747
Query: 969 VKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLP 1017
KDRLY R S L LLR +API+PHLAE+ + +LP
Sbjct: 748 AKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLP 796
Score = 425 bits (1094), Expect = e-130
Identities = 190/427 (44%), Positives = 253/427 (59%), Gaps = 41/427 (9%)
Query: 7 LYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 66
+Y + NG+ F LHDGPPYANG HIGHA+NKILKD R LLQGK+VHYVPGWD
Sbjct: 21 VYKRVSDRNNGES-FTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWD 79
Query: 67 CHGLPIELKAITSKD----KLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCY 122
CHGLPIELK + S D K L+P+ +R KA FA +T++TQ+ F+ +GV DWE N Y
Sbjct: 80 CHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWE-NPY 138
Query: 123 HTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIYLK 182
T D EY Q+ F ++ YIYR KPV+WSPSSRTALAE+ELEY HVSKSIY+
Sbjct: 139 LTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVA 198
Query: 183 IKLNQVP---AHLLEGATDLHAL-IWTTTPWSLPANQFIAFNPALEYSVASVKGAN---- 234
+ LE +L IWTTTPW++PAN +A N L+YSV V+ +
Sbjct: 199 FPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDES 258
Query: 235 ---------------------VIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPI 273
+IVA LV +L+ + + V+ FPG L+ YIHP+
Sbjct: 259 TSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPL 318
Query: 274 NKEQRDLKLLPAG-FVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDA 332
R+ ++ G ++++ GTGLVH AP HGQ+D++ L +P+L+ + + GK++ +A
Sbjct: 319 YN--RESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEA 376
Query: 333 GPGLEGLNILGDGKDQVL-HLVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTE 390
G GL++LG+G V+ L E L E Y H YPYDWRTKKP I +A++QWF E
Sbjct: 377 GQ-FSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVE 435
Query: 391 RIKPEAL 397
+ AL
Sbjct: 436 GFRQAAL 442
Score = 178 bits (452), Expect = 3e-45
Identities = 68/157 (43%), Positives = 95/157 (60%), Gaps = 5/157 (3%)
Query: 1111 NQGKYSPDAGPGLEGLNILGEGKDQVL-HLVEPDVL-WTENYQHSYPYDWRTKKPVILKA 1168
+ GK++ +AG GL++LGEG V+ L E L E Y H YPYDWRTKKP I +A
Sbjct: 368 DAGKFTEEAGQ-FSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRA 426
Query: 1169 SQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPVFYD 1228
++QWF E + AL ++ V ++P + +R ++ R WCISRQR WGVPIPVFY
Sbjct: 427 TEQWFASVEGFRQAALDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPVFYH 486
Query: 1229 GDT--IIVNEANIKHFCTLIDEHGPDFWWSLPVEQLL 1263
+T ++NE I H +++ + G D WW + VE LL
Sbjct: 487 VETKEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLL 523
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 511 bits (1319), Expect = e-163
Identities = 219/644 (34%), Positives = 328/644 (50%), Gaps = 81/644 (12%)
Query: 418 TALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFN 477
TALAE+E+EY D S +I++K + L G + +IWTTTPW++PAN+ I+++
Sbjct: 201 TALAEAEIEYH-DIESDTIWVKFPVKDGKGILDSGT---YVVIWTTTPWTIPANRAISYS 256
Query: 478 PALEYSVASVKGA----------NVIVAKCLVENLKWTFQ-TDIDVVCDFPGQYLQDITY 526
P +EY + V GA ++VA L E++ + + D G+ L+ I
Sbjct: 257 PDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVC 316
Query: 527 IHPINKEQR---DLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALA---EKIPVLNLIT 580
HP++ ++ +L V+ GTG VH AP HG++DF + + +IPV +
Sbjct: 317 AHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVT--VD 374
Query: 581 NQGKYSPDAGPGLEGLNIL-------GDGKDQVLH-LVEPDVLW-TENYQHSYPYDWRTK 631
G Y+ +A PG G ++ GD V+ L+E +L +HSYP+ WR+K
Sbjct: 375 EDGFYTENA-PGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSK 433
Query: 632 KPVILKASQQWFIDTERIKP-------EALACLEEVNFVPESAKKTLRDQIAQRPYWCIS 684
KPVI + + QWFI ++ AL +++ FVP + + L + I RP W IS
Sbjct: 434 KPVIFRNTPQWFISMDKDLGDGTTLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVIS 493
Query: 685 RQRVWGVPIPVFYDGD-TIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSD-VNSNV 742
RQR WGVPIP+F D I+++E +E G D W++ ++ N
Sbjct: 494 RQRAWGVPIPIFVAEDGEILMDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEF 553
Query: 743 TKSNDILDIWFDSGISWSHVLKDK-----PAHVYMEGMDQINGWFMSSLLTSVALKHTAP 797
TK DILD+WFDSG + + VL+D+ PA +Y+EG DQ GWF SSLL S + AP
Sbjct: 554 TKVTDILDVWFDSGSTHAFVLEDRPDLKWPADLYLEGSDQHRGWFNSSLLESCGTRGRAP 613
Query: 798 FRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKK 857
++ V HGF +DEKG KMSKS+GN +S D+ K+
Sbjct: 614 YKAVLTHGFTLDEKGEKMSKSLGNTVSPQDV---IKQ----------------------- 647
Query: 858 LPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGS 917
G D+LR WVA+ D IGK IL + +K+R++LR+LLG L +
Sbjct: 648 ---SGADILRLWVASVDYSD-DQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDV 703
Query: 918 IS----RYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRL 973
++ ++ YML RL E + Y + + R + L+NFV +LSAFYF + KD L
Sbjct: 704 VAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDAL 763
Query: 974 YCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLP 1017
YCD+ + R + + IF L + +API+P AEE + +
Sbjct: 764 YCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRY 807
Score = 383 bits (985), Expect = e-115
Identities = 158/422 (37%), Positives = 229/422 (54%), Gaps = 42/422 (9%)
Query: 6 ELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGW 65
+LY RE G+P+F+LHDGPPYANG HIGHA+NKILKD+ +RS + G +YVPGW
Sbjct: 41 DLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGW 100
Query: 66 DCHGLPIELKAITSKDKL-------LSPLDIRKKAKNFALETINTQKAEFESWGVLADWE 118
DCHGLPIE K I K + + + RK+ + +AL I+ Q+ EF+ GVL DW+
Sbjct: 101 DCHGLPIEWK-IEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWD 159
Query: 119 HNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKS 178
+ Y T D +F + +YR KPV WS RTALAE+E+EY D S +
Sbjct: 160 NP-YTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYH-DIESDT 217
Query: 179 IYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGA----- 233
I++K + L G + +IWTTTPW++PAN+ I+++P +EY + V GA
Sbjct: 218 IWVKFPVKDGKGILDSGT---YVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFW 274
Query: 234 -----NVIVAKCLVESLKWTFQ-TDIEVVCDFPGQYLQDITYIHPINKEQR---DLKLLP 284
++VA L ES+ E + D G+ L+ I HP++ ++ +L
Sbjct: 275 AKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLD 334
Query: 285 AGFVSSSKGTGLVHCAPAHGQDDFLLALA---EKIPVLNLITNQGKYSPDAGPGLEGLNI 341
V+ GTG VH AP HG++DF + + +IPV + G Y+ +A PG G +
Sbjct: 335 GDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPV--TVDEDGFYTENA-PGFGGARV 391
Query: 342 L-------GDGKDQVLH-LVEPDVLW-TENYQHSYPYDWRTKKPVILKASQQWFIDTERI 392
+ GD V+ L+E +L +HSYP+ WR+KKPVI + + QWFI ++
Sbjct: 392 IDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKD 451
Query: 393 KP 394
Sbjct: 452 LG 453
Score = 146 bits (371), Expect = 2e-35
Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 18/172 (10%)
Query: 1113 GKYSPDAGPGLEGLNILG-EGK------DQVLH-LVEPDVLW-TENYQHSYPYDWRTKKP 1163
G Y+ +A PG G ++ EGK V+ L+E +L +HSYP+ WR+KKP
Sbjct: 377 GFYTENA-PGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKP 435
Query: 1164 VILKASQQWFIDTERIKP-------EALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQ 1216
VI + + QWFI ++ AL ++ FVP + + L + I RP W ISRQ
Sbjct: 436 VIFRNTPQWFISMDKDLGDGTTLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQ 495
Query: 1217 RVWGVPIPVFYDGD-TIIVNEANIKHFCTLIDEHGPDFWWSLPVEQLLNTSD 1267
R WGVPIP+F D I+++E +E G D W++ ++
Sbjct: 496 RAWGVPIPIFVAEDGEILMDEEVNARIADAFEEEGADAWFAEGAKERFLGGF 547
Score = 52.3 bits (126), Expect = 2e-06
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 1039 IAKRILYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLP 1088
I K LYCD+ + R + + IF L + +API+P AEE + +
Sbjct: 758 IRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRY 807
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase and
is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and mitochondrial
forms [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 491 bits (1265), Expect = e-156
Identities = 208/644 (32%), Positives = 316/644 (49%), Gaps = 75/644 (11%)
Query: 415 RPGTALAESELEYK---PDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPAN 471
R TALAE+E+EYK D SIY+K + + LIWTTTPW+LP+N
Sbjct: 181 RCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKK-TYLKVKLSSLLIWTTTPWTLPSN 239
Query: 472 QFIAFNPALEYSVASVKGAN--VIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHP 529
IA +P EY++ I+AK LVE L +D +++ F G L+ + Y HP
Sbjct: 240 LAIAVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHP 299
Query: 530 IN-----KEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGK 584
+ ++ ++ V++ GTG+VH AP HG++D+ + + VL+ + +G
Sbjct: 300 LYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGV 359
Query: 585 YSPDAGP------GLEGLNILGDGKDQVLHLVEPDVL-WTENYQHSYPYDWRTKKPVILK 637
Y+ +I+ K + L + +L E HSYP+ WRTK PVI +
Sbjct: 360 YTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYR 419
Query: 638 ASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFY 697
A++QWFI T+ IK + L +++VN+VPE + + + RP WCISRQR WG+PIP++Y
Sbjct: 420 ATEQWFIKTKDIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWY 479
Query: 698 DGDTI-IVNEANIKHFCTLIDEHGPDFWWSLSVEQLLN----TSDVNSNVTKSNDILDIW 752
DT + +I+ LI+ G D W+ L+ S + D+LD+W
Sbjct: 480 CEDTGEPIVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVW 539
Query: 753 FDSGISWSHVLKDK----------PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVF 802
FDSG + PA +EG DQ GWF SSL AL AP++NV
Sbjct: 540 FDSGSMPYASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVI 599
Query: 803 LHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYG 862
HGF +DEKG KMSKS+GNV+ + + YG
Sbjct: 600 THGFTLDEKGRKMSKSLGNVVDPLKV-----------------------------INKYG 630
Query: 863 VDVLRWWVAAHASKDPT--VPIGKNILNSSQDDVQKIR-SSLRYLL--GVLHNHSESTGS 917
D+LR +VA S DP + IL + +KIR ++ R+LL L S
Sbjct: 631 ADILRLYVA---SSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNS 687
Query: 918 IS----RYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRL 973
++ D ++L RL ++ ++ + + R L +F+V ELS +Y +++DRL
Sbjct: 688 VAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRL 747
Query: 974 YCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLP 1017
YC++ + + R + TL+ L+R +AP +PH AEE+Y +LP
Sbjct: 748 YCEAKDNDKR-AAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLP 790
Score = 409 bits (1052), Expect = e-125
Identities = 161/410 (39%), Positives = 227/410 (55%), Gaps = 26/410 (6%)
Query: 12 REALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLP 71
++ GKPEFI HDGPPYANG+ H+GHA+NKILKDI LR +QG V PGWD HGLP
Sbjct: 29 KKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLP 88
Query: 72 IELKA-----ITSKDKL--LSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHT 124
IE K I+ K ++ L + R+K + FAL+ I Q+ +F+ GV DWE N Y T
Sbjct: 89 IEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWE-NPYKT 147
Query: 125 FDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYK---PDHVSKSIYL 181
D Y ++Q F +++ +YR LKPVYWSP RTALAE+E+EYK D SIY+
Sbjct: 148 MDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYV 207
Query: 182 KIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGAN--VIVAK 239
K + + LIWTTTPW+LP+N IA +P EY++ I+AK
Sbjct: 208 KFPVKKDKK-TYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAK 266
Query: 240 CLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPIN-----KEQRDLKLLPAGFVSSSKGT 294
LVE L +D E++ F G L+ + Y HP+ ++ ++ V++ GT
Sbjct: 267 KLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGT 326
Query: 295 GLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGP------GLEGLNILGDGKDQ 348
G+VH AP HG++D+ + + VL+ + +G Y+ +I+ K
Sbjct: 327 GIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKII 386
Query: 349 VLHLVEPDVL-WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 397
+ L + +L E HSYP+ WRTK PVI +A++QWFI T+ IK + L
Sbjct: 387 IEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQML 436
Score = 150 bits (382), Expect = 6e-37
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 5/160 (3%)
Query: 1106 LNLITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVI 1165
+ QG++ DA + N + + + L+ L E HSYP+ WRTK PVI
Sbjct: 362 EGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLL----LKAEKITHSYPHCWRTKTPVI 417
Query: 1166 LKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPV 1225
+A++QWFI T+ IK + L ++ VN+VPE + + + RP WCISRQR WG+PIP+
Sbjct: 418 YRATEQWFIKTKDIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPI 477
Query: 1226 FYDGDTI-IVNEANIKHFCTLIDEHGPDFWWSLPVEQLLN 1264
+Y DT + +I+ LI+ G D W+ L+
Sbjct: 478 WYCEDTGEPIVVGSIEELIELIELKGIDAWFEDLHRDFLD 517
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 342 bits (879), Expect = e-104
Identities = 154/469 (32%), Positives = 226/469 (48%), Gaps = 57/469 (12%)
Query: 417 GTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAF 476
TAL+E+E+EYK D SI++ L +IWTTTPW+LP N +A
Sbjct: 170 NTALSEAEVEYK-DVKGPSIHVAFPL--------ADGKGASLVIWTTTPWTLPGNTAVAV 220
Query: 477 NPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRD 536
NP Y V G I+A+ L+++L + D +++ DF G+ L YIHP R+
Sbjct: 221 NPEFNYVKIRVTGEYYILAEALLKSLYKKKKEDGEILEDFRGKELIGKKYIHPFV--NRE 278
Query: 537 LKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGL 596
+ ++ +V GTG VH APAHG+DD+ + + +N + + G Y+ +A +GL
Sbjct: 279 IPIIADDYVDMEFGTGAVHIAPAHGEDDYEVGKRHNLEFINPVDDDGTYNEEAPE-FQGL 337
Query: 597 NILGDGKDQVLHLVEPDVLW-TENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALA 655
K V L E +L E +HSYP+ WR+ P+I +A+ QWF+ + + AL
Sbjct: 338 KRFKARKKIVELLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKNLAEAALK 397
Query: 656 CLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYDGDT--IIVNEANIKHFC 713
+E+V FVP+ +K + + WCISRQR WG PIP +Y DT + V + +
Sbjct: 398 AVEKVQFVPKWGEKRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTGEVYVRGSLKELVA 457
Query: 714 TLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVL---------- 763
+E G + W + LL + + D+LD WF SG L
Sbjct: 458 GREEEEGIEAWLHRDAKDLL--GKGAGTLEQDEDVLDTWFSSGSWPFSTLGYPFTNTPEF 515
Query: 764 -KDKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNV 822
+ PA + +EG DQ GWF ++ AL +AP++NV +HG V DE+G KMSKS+GNV
Sbjct: 516 KRFFPADMLLEGSDQTRGWFYRMIVLGTALTGSAPYKNVLVHGLVRDEQGRKMSKSLGNV 575
Query: 823 ISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVA 871
I D+ YG D LR W+A
Sbjct: 576 IDPLDVID-----------------------------KYGADALRLWLA 595
Score = 322 bits (827), Expect = 9e-97
Identities = 146/399 (36%), Positives = 206/399 (51%), Gaps = 21/399 (5%)
Query: 7 LYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 66
+ E GKP F +HDGPP A G HIGHA+NK LKDI +R +QG V +VPGWD
Sbjct: 11 YFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLWVPGWD 70
Query: 67 CHGLPIELK-----AITSKDKL--LSPLDIRKKAKNFALETINTQKAEFESWGVLADWEH 119
HGLP E K I K L R+K + + +E + +++F+ GV DW+
Sbjct: 71 HHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLGVSGDWDR 130
Query: 120 NCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSI 179
Y T D F L+ + IYR KPV WSP+ TAL+E+E+EYK D SI
Sbjct: 131 E-YFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEYK-DVKGPSI 188
Query: 180 YLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAK 239
++ L +IWTTTPW+LP N +A NP Y V G I+A+
Sbjct: 189 HVAFP--------LADGKGASLVIWTTTPWTLPGNTAVAVNPEFNYVKIRVTGEYYILAE 240
Query: 240 CLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHC 299
L++SL + D E++ DF G+ L YIHP R++ ++ +V GTG VH
Sbjct: 241 ALLKSLYKKKKEDGEILEDFRGKELIGKKYIHPFV--NREIPIIADDYVDMEFGTGAVHI 298
Query: 300 APAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLW 359
APAHG+DD+ + + +N + + G Y+ +A +GL K V L E +L
Sbjct: 299 APAHGEDDYEVGKRHNLEFINPVDDDGTYNEEAPE-FQGLKRFKARKKIVELLTEKGLLL 357
Query: 360 -TENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 397
E +HSYP+ WR+ P+I +A+ QWF+ + + AL
Sbjct: 358 KIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKNLAEAAL 396
Score = 125 bits (316), Expect = 2e-29
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 1106 LNLITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVLW-TENYQHSYPYDWRTKKPV 1164
+N + + G Y+ +A +GL K V L E +L E +HSYP+ WR+ P+
Sbjct: 318 INPVDDDGTYNEEAPE-FQGLKRFKARKKIVELLTEKGLLLKIEPIEHSYPHCWRSGTPI 376
Query: 1165 ILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIP 1224
I +A+ QWF+ + + AL +E V FVP+ +K + + WCISRQR WG PIP
Sbjct: 377 IYRATPQWFVRMKNLAEAALKAVEKVQFVPKWGEKRYGNWLENIQDWCISRQRWWGHPIP 436
Query: 1225 VFYDGDT--IIVNEANIKHFCTLIDEHGPDFWWSLPVEQLL 1263
+Y DT + V + + +E G + W + LL
Sbjct: 437 AWYSKDTGEVYVRGSLKELVAGREEEEGIEAWLHRDAKDLL 477
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 342 bits (881), Expect = e-100
Identities = 179/652 (27%), Positives = 294/652 (45%), Gaps = 117/652 (17%)
Query: 415 RPGTALAESELE--YKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQ 472
R T L+ E+ YK D S+Y+K KL +G + + L WTTTPW+LP+N
Sbjct: 186 RCETPLSNHEVAQGYK-DVKDPSVYVKFKL--------KGEENEYLLAWTTTPWTLPSNL 236
Query: 473 FIAFNPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPIN- 531
+A +P ++Y G I+A+ L+E + + D +VV F G L+ + Y P
Sbjct: 237 ALAVHPDIDYVKVEGGGEVYILAEALLEKV---LKEDYEVVETFKGSELEGLEYEPPFPY 293
Query: 532 --KEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDA 589
E+ +++ A FV++ GTG+VH APA G+DDF + +PV+ + + G+++ +
Sbjct: 294 FADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEV 353
Query: 590 GPGLEGLNILGDGKDQVLHLVEPDVLW-TENYQHSYPYDWRTKKPVILKASQQWFIDTER 648
G + K+ + L E +L+ E Y+HSYP+ WR P+I A++ WFI +
Sbjct: 354 PD-YAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTK 412
Query: 649 IKPEALACLEEVNFVPESAKKT--------LRDQIAQRPYWCISRQRVWGVPIPVF---Y 697
IK L +++N+ PE K RD W ISR R WG P+P++
Sbjct: 413 IKDRMLELNQKINWYPEHIKDGRFGKWLENARD-------WNISRNRYWGTPLPIWRCED 465
Query: 698 DGDTIIVN-----EANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIW 752
G ++ E ID H P V+++ + + D++D+W
Sbjct: 466 CGRIDVIGSIEELEELFGEDVEPIDLHRP------YVDEVTLPCPDGGTMRRVPDVIDVW 519
Query: 753 FDSGI----SWSHVLKDK-------PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNV 801
FDSG + ++K PA +EG+DQ GWF + L S AL P++NV
Sbjct: 520 FDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNV 579
Query: 802 FLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAY 861
+HG V+DE G KMSKS+GN + ++ +K Y
Sbjct: 580 LVHGHVLDEDGQKMSKSLGNYVDPFEVF---------DK--------------------Y 610
Query: 862 GVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHN----------- 910
G D LRW++ + ++ ++ L S+D V+++ +R L L N
Sbjct: 611 GADALRWYLLSSSAP------WED-LRFSEDGVREV---VRKFLLTLWNVYSFFVLYANL 660
Query: 911 --HSESTGSIS----RYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAF 964
+D ++L RL + + +A+R + +F V++LS +
Sbjct: 661 DGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDF-VDDLSNW 719
Query: 965 YFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
Y + R + + +L+ TL+ + L R AP P +AEE+Y +L
Sbjct: 720 YIRRSRRRFW-KEEDDPDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNL 770
Score = 325 bits (837), Expect = 2e-94
Identities = 129/401 (32%), Positives = 203/401 (50%), Gaps = 39/401 (9%)
Query: 12 REALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLP 71
E G PEF+ +DGPP ANG PH GH + + +KD+ R ++G +V GWD HGLP
Sbjct: 34 IENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLP 93
Query: 72 IELKA-----ITSKDKLLSPLDIRK--------KAKNFALETINTQKAEFESWGVLADWE 118
+EL+ I+ K DI + K + L + + E G D++
Sbjct: 94 VELEVEKELGISGKK------DIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFD 147
Query: 119 HNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELE--YKPDHVS 176
N Y T D EY+++ LY + +Y+ + V + P T L+ E+ YK D
Sbjct: 148 -NPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYK-DVKD 205
Query: 177 KSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVI 236
S+Y+K K L+G + + L WTTTPW+LP+N +A +P ++Y G I
Sbjct: 206 PSVYVKFK--------LKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYI 257
Query: 237 VAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPIN---KEQRDLKLLPAGFVSSSKG 293
+A+ L+E + + D EVV F G L+ + Y P E+ +++ A FV++ G
Sbjct: 258 LAEALLEKV---LKEDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDG 314
Query: 294 TGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLV 353
TG+VH APA G+DDF + +PV+ + + G+++ + G + K+ + L
Sbjct: 315 TGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPD-YAGKFVKDADKEIIRDLK 373
Query: 354 EPDVLW-TENYQHSYPYDWRTKKPVILKASQQWFIDTERIK 393
E +L+ E Y+HSYP+ WR P+I A++ WFI +IK
Sbjct: 374 ERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIK 414
Score = 101 bits (254), Expect = 1e-21
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 17/129 (13%)
Query: 1106 LNLITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVLW-TENYQHSYPYDWRTKKPV 1164
+ + + G+++ + G + K+ + L E +L+ E Y+HSYP+ WR P+
Sbjct: 340 VCPVDDDGRFTEEVPD-YAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPL 398
Query: 1165 ILKASQQWFIDTERIKPEALACLEGVNFVPESAKKS--------LRDQIAQRPYWCISRQ 1216
I A++ WFI +IK L + +N+ PE K RD W ISR
Sbjct: 399 IYYATESWFIRVTKIKDRMLELNQKINWYPEHIKDGRFGKWLENARD-------WNISRN 451
Query: 1217 RVWGVPIPV 1225
R WG P+P+
Sbjct: 452 RYWGTPLPI 460
Score = 38.6 bits (91), Expect = 0.029
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 1050 NGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1087
+ +L+ TL+ + L R AP P +AEE+Y +L
Sbjct: 733 DDPDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNL 770
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 245 bits (627), Expect = 2e-67
Identities = 149/628 (23%), Positives = 256/628 (40%), Gaps = 129/628 (20%)
Query: 417 GTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAF 476
TA+++ E+EYK + KL + L +G L ++ TT P +L + +A
Sbjct: 179 RTAISDIEVEYKEV--------EGKLYYIKYPLADGDGYL--VVATTRPETLLGDTAVAV 228
Query: 477 NPALE-YSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQR 535
+P E Y K LV G+ + I P+ R
Sbjct: 229 HPDDERY-------------KHLV------------------GKEV-----ILPLVG--R 250
Query: 536 DLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEG 595
++ ++ +V GTG V PAH +D+ + +P++N+I G+ + +A G
Sbjct: 251 EIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAG 310
Query: 596 LNILGDGKDQVL-------HLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTER 648
L+ + + +++ LV+ E ++HS + R P+ S+QWF+
Sbjct: 311 LDRF-EARKKIVEDLEEQGLLVK-----IEPHKHSVGHCERCGTPIEPLLSKQWFVKVLE 364
Query: 649 IKPEALACLE--EVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYDGDT--IIV 704
+ +AL ++ ++ FVPE +K D + WCISRQ WG IPV+Y + ++V
Sbjct: 365 LAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVV 424
Query: 705 NEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVL- 763
E + + + D+LD WF S + L
Sbjct: 425 AE-------------------EEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLG 465
Query: 764 ---------KDKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAK 814
K P + + G D I W ++ + L PF++V++HG V DE+G K
Sbjct: 466 WPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRK 525
Query: 815 MSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHA 874
MSKS GNVI D+ + YG D LR+ +A+ A
Sbjct: 526 MSKSKGNVIDPLDV-----------------------------IDKYGADALRFTLASLA 556
Query: 875 SKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVL--HNHSESTGSISRYVDVYMLKRLCE 932
S + + + ++ + K+ ++ R++L L + D ++L RL E
Sbjct: 557 SPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNE 616
Query: 933 FQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHN 992
+ +++ A+R L F+ N+ +Y L K RLY E + + TL+
Sbjct: 617 TVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGGE---EEKRAARATLYY 673
Query: 993 IFHVLLRTVAPIMPHLAEEVYSHLPSRQ 1020
+ LLR + P MP + EE++ LP +
Sbjct: 674 VLDTLLRLLHPFMPFITEEIWQKLPGTE 701
Score = 162 bits (411), Expect = 2e-40
Identities = 99/397 (24%), Positives = 162/397 (40%), Gaps = 73/397 (18%)
Query: 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELK- 75
KP F + PP G+ H+GHA+N L+DI R ++G V + PG D G+ ++
Sbjct: 31 DKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVV 90
Query: 76 -------AITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKE 128
IT D L + KK + E+ T + + GV DW T D
Sbjct: 91 EKQLAAEGITRHD--LGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRE-RFTMDPG 147
Query: 129 YVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIYLKIKLNQV 188
+ F LY++ IYR + V W P RTA+++ E+EYK KL +
Sbjct: 148 LSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEG--------KLYYI 199
Query: 189 PAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALE-YSVASVKGANVIVAKCLVESLKW 247
L +G L ++ TT P +L + +A +P E Y + G VI+
Sbjct: 200 KYPLADGDGYL--VVATTRPETLLGDTAVAVHPDDERY--KHLVGKEVILP--------- 246
Query: 248 TFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDD 307
+I ++ D Y+ P GTG V PAH +D
Sbjct: 247 LVGREIPIIADE---------YVDP------------------EFGTGAVKITPAHDFND 279
Query: 308 FLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVL-------HLVEPDVLWT 360
+ + +P++N+I G+ + +A GL+ + + +++ LV+
Sbjct: 280 YEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRF-EARKKIVEDLEEQGLLVK-----I 333
Query: 361 ENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 397
E ++HS + R P+ S+QWF+ + +AL
Sbjct: 334 EPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKAL 370
Score = 91.9 bits (229), Expect = 1e-18
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 1104 HHL---NLITNQGKYSPDAGPGLEGLNILGEGKDQVL-------HLVEPDVLWTENYQHS 1153
H+L N+I G+ + +A GL+ E + +++ LV+ E ++HS
Sbjct: 286 HNLPLINIIDEDGRINEEAAGEFAGLDRF-EARKKIVEDLEEQGLLVK-----IEPHKHS 339
Query: 1154 YPYDWRTKKPVILKASQQWFIDTERIKPEALACLEG--VNFVPESAKKSLRDQIAQRPYW 1211
+ R P+ S+QWF+ + +AL ++ + FVPE +K D + W
Sbjct: 340 VGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDW 399
Query: 1212 CISRQRVWGVPIPVFYDGDT--IIVNE 1236
CISRQ WG IPV+Y + ++V E
Sbjct: 400 CISRQLWWGHRIPVWYCKECGNVVVAE 426
Score = 46.9 bits (112), Expect = 8e-05
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 1039 IAKRILYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQ 1091
+AK LY E + + TL+ + LLR + P MP + EE++ LP +
Sbjct: 652 LAKPRLYGGE---EEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGTE 701
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 214 bits (548), Expect = 8e-62
Identities = 83/250 (33%), Positives = 111/250 (44%), Gaps = 75/250 (30%)
Query: 633 PVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVP 692
P+I +A+ QWFI +IK L ++VN++PE K + + R WCISRQR WG P
Sbjct: 144 PLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTP 203
Query: 693 IPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIW 752
IPV+Y D ++L V + D+LD+W
Sbjct: 204 IPVWYCEDC----------------------------GEVL--------VRRVPDVLDVW 227
Query: 753 FDSGISWSHVL----------KDKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVF 802
FDSG L + PA +EG DQ GWF S LL S AL AP++NV
Sbjct: 228 FDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKAPYKNVI 287
Query: 803 LHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYG 862
+HGFV+DE G KMSKS+GN + ++ + YG
Sbjct: 288 VHGFVLDEDGRKMSKSLGNYVDPQEV-----------------------------VDKYG 318
Query: 863 VDVLRWWVAA 872
D LR WVA+
Sbjct: 319 ADALRLWVAS 328
Score = 198 bits (506), Expect = 3e-56
Identities = 67/144 (46%), Positives = 87/144 (60%), Gaps = 8/144 (5%)
Query: 19 PEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA-- 76
PEF+ HDGPPYANG PH GHA+NKILKDI R +QG V PGWDCHGLPIELK
Sbjct: 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEK 60
Query: 77 ---ITSKDKL--LSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVK 131
I+ K + + + K + FAL ++ Q+ +F+ GV DWE N Y T D EY++
Sbjct: 61 ELGISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWE-NPYKTMDPEYME 119
Query: 132 NQLCQFYNLYKQDYIYRDLKPVYW 155
+ F L+++ +YR K V W
Sbjct: 120 SVWWVFKQLHEKGLLYRGYKVVPW 143
Score = 103 bits (259), Expect = 1e-23
Identities = 31/69 (44%), Positives = 41/69 (59%)
Query: 1163 PVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVP 1222
P+I +A+ QWFI +IK L + VN++PE K + + R WCISRQR WG P
Sbjct: 144 PLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTP 203
Query: 1223 IPVFYDGDT 1231
IPV+Y D
Sbjct: 204 IPVWYCEDC 212
Score = 36.1 bits (84), Expect = 0.10
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 376 PVILKASQQWFIDTERIKPEAL 397
P+I +A+ QWFI +IK L
Sbjct: 144 PLIYRATPQWFIRVTKIKDRLL 165
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 214 bits (548), Expect = 2e-57
Identities = 149/627 (23%), Positives = 258/627 (41%), Gaps = 124/627 (19%)
Query: 415 RPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFI 474
+ TA+++ E+EYK +K KL + L G+ D + ++ TT P ++ + +
Sbjct: 177 KLNTAISDIEVEYKE--------VKGKLYYIRYPLANGSKD-YLVVATTRPETMFGDTAV 227
Query: 475 AFNPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKE- 533
A +P +D Y H I K+
Sbjct: 228 AVHP-------------------------------------------EDERYKHLIGKKV 244
Query: 534 -----QRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPD 588
R + ++ +V GTG V PAH +D+ + +N++ G + +
Sbjct: 245 ILPLTGRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNEN 304
Query: 589 AGPGLEGLNILGDGKDQVLHLVEPDVLW--TENYQHSYPYDWRTKKPVILKASQQWFIDT 646
AG +GL + + +++ ++ + L E + H+ WR+ V S+QWF+
Sbjct: 305 AGK-YQGLTRF-EARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKV 362
Query: 647 ERIKPEALACLEE--VNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYDGDTIIV 704
E++ +AL EE + FVP+ +K + + WCISRQ +WG IPV+Y + V
Sbjct: 363 EKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEV 422
Query: 705 NEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGIS------ 758
A + GP + + D+LD WF S +
Sbjct: 423 YVAKEEPLPDDKTNTGPSV-----------------ELEQDTDVLDTWFSSSLWPFSTLG 465
Query: 759 WSHVLKDK----PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAK 814
W KD P + + G D I W + S+AL PF+ V++HG V DE+G K
Sbjct: 466 WPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRK 525
Query: 815 MSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHA 874
MSKS+GNVI D+ I + YG D LR+ +A+
Sbjct: 526 MSKSLGNVIDPLDV----------------------IEK-------YGADALRFTLASLV 556
Query: 875 SKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGS--ISRYVDVYMLKRLCE 932
+ + + S+++ + K+ ++ R++L L + E +G D ++L +L
Sbjct: 557 TPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLELSGGEEKLSLADRWILSKLNR 616
Query: 933 FQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHN 992
+ ++++A A++ L F+ N+ +Y LVK RLY N + + TL+
Sbjct: 617 TIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNG--NEAEKKAARDTLYY 674
Query: 993 IFHVLLRTVAPIMPHLAEEVYSHLPSR 1019
+ LR + P MP + EE++ H
Sbjct: 675 VLDKALRLLHPFMPFITEEIWQHFKEG 701
Score = 157 bits (400), Expect = 4e-39
Identities = 98/397 (24%), Positives = 164/397 (41%), Gaps = 59/397 (14%)
Query: 18 KPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELK-- 75
KP F + PP G+ HIGHA+N ++DI R ++G V ++PG D G+ ++K
Sbjct: 32 KPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVE 91
Query: 76 ---AITSKDKLLSPLD-IRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVK 131
K K + R+K + E+ T K + + G DW T D+ K
Sbjct: 92 KKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRE-RFTMDEGLSK 150
Query: 132 NQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIYLKIKLNQVPAH 191
F LY++ IYR V W P TA+++ E+EYK +K KL +
Sbjct: 151 AVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKE--------VKGKLYYIRYP 202
Query: 192 LLEGATDLHALIWTTTPWSLPANQFIAFNPALE-YSVASVKGANVIVAKCLVESLKWTFQ 250
L G+ D + ++ TT P ++ + +A +P E Y + G VI+
Sbjct: 203 LANGSKD-YLVVATTRPETMFGDTAVAVHPEDERY--KHLIGKKVILP---------LTG 250
Query: 251 TDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLL 310
I ++ D +V GTG V PAH +D+
Sbjct: 251 RKIPIIADE---------------------------YVDMEFGTGAVKVTPAHDFNDYEW 283
Query: 311 ALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLW--TENYQHSYP 368
+ +N++ G + +AG +GL + + +++ ++ + L E + H+
Sbjct: 284 GKRHNLEFINILDEDGLLNENAGK-YQGLTRF-EARKKIVEDLKEEGLLVKIEPHTHNVG 341
Query: 369 YDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNI 405
WR+ V S+QWF+ E++ +AL G I
Sbjct: 342 TCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEI 378
Score = 81.3 bits (201), Expect = 2e-15
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 1104 HHL---NLITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVLW--TENYQHSYPYDW 1158
H+L N++ G + +AG +GL E + +++ ++ + L E + H+ W
Sbjct: 287 HNLEFINILDEDGLLNENAGK-YQGLTRF-EARKKIVEDLKEEGLLVKIEPHTHNVGTCW 344
Query: 1159 RTKKPVILKASQQWFIDTERIKPEALACLE--GVNFVPESAKKSLRDQIAQRPYWCISRQ 1216
R+ V S+QWF+ E++ +AL E + FVP+ +K + + WCISRQ
Sbjct: 345 RSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQ 404
Query: 1217 RVWGVPIPVFYDGDTIIV 1234
+WG IPV+Y + V
Sbjct: 405 LIWGHRIPVWYCKECGEV 422
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 208 bits (531), Expect = 2e-55
Identities = 148/638 (23%), Positives = 239/638 (37%), Gaps = 146/638 (22%)
Query: 417 GTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAF 476
TA+A++E+EY+ IK I TT P LPA +
Sbjct: 181 ETAIAQAEVEYRERE---GKLNYIKF--------PVEDGEEIEIATTRPELLPACVAVVV 229
Query: 477 NPALE-YSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPI-NKEQ 534
+P E Y + G IV P+ E
Sbjct: 230 HPDDERY--KHLVGKTAIV----------------------------------PLFGVE- 252
Query: 535 RDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLE 594
+ +L V GTG V + D +P +I G+ + AG L
Sbjct: 253 --VPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGK-LA 309
Query: 595 GLNILGDGKDQVL-------HLVEPDVLWTENYQHSYPYDWRTKKPV-ILKASQQWFIDT 646
GL I + + +++ L + E +H+ + R P+ IL ++QWFI
Sbjct: 310 GLTIE-EARKKIVEDLKSGGLLGKQ-----EPIKHNVKFCERCDTPLEIL-VTRQWFIKV 362
Query: 647 ERIKPEALACLEEVNFVPESAKKTLRDQIAQRPY-WCISRQRVWGVPIPVFY--DGDTII 703
+K E L +E+N+ PE + L + I + WCISRQR +G PIPV+Y D I
Sbjct: 363 LDLKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPI 422
Query: 704 VNEANIKHFCTLIDEHGPDFWWSLSVEQLL--NTSDV----------NSNVTKSNDILDI 751
+ PD E L T D + D++D
Sbjct: 423 L----------------PD------EEDLPVDPTKDEPPGYKCPQCGSPGFEGETDVMDT 460
Query: 752 WFDSGISW---SHVLKDK-------PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNV 801
W S I+ + +D+ P + +G D I W ++L + L P++N+
Sbjct: 461 WATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNI 520
Query: 802 FLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAY 861
+ G V+D G KMSKS GNV++ ++ EK Y
Sbjct: 521 MISGMVLDPDGKKMSKSKGNVVTPEELL---------EK--------------------Y 551
Query: 862 GVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRY 921
G D +R+W AA A P + + + + K+ ++ R++L + +
Sbjct: 552 GADAVRYW-AASARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLHFSADPEPDKAEVLEP 610
Query: 922 VDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGE 981
+D ++L +L + + +A+A + +F + Y LVK R Y E
Sbjct: 611 LDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAY-GEDEEE 669
Query: 982 ARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSR 1019
+ S +TL+ + LLR +AP +P + EEV+S L
Sbjct: 670 EQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLYGG 707
Score = 122 bits (310), Expect = 3e-28
Identities = 98/410 (23%), Positives = 149/410 (36%), Gaps = 82/410 (20%)
Query: 5 SELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 64
Y + + KP + + PP +G+ HIGH + D R ++G V + G
Sbjct: 26 EGTYKFDPDE--RKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQG 83
Query: 65 WDCHGLPIELKA-----ITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEH 119
WD +GLP E K I D +S + + + E + + G+ DW
Sbjct: 84 WDDNGLPTERKVEKYYGIRKDD--ISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSL 141
Query: 120 NCYHTFDKEYVKNQLCQ--FYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSK 177
Y T EY + + Q F +LYK+ IYR PV W P TA+A++E+EY+
Sbjct: 142 E-YQTISPEYRR--ISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYRERE--- 195
Query: 178 SIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALE-YSVASVKGANVI 236
IK I TT P LPA + +P E Y + G I
Sbjct: 196 GKLNYIK--------FPVEDGEEIEIATTRPELLPACVAVVVHPDDERY--KHLVGKTAI 245
Query: 237 VAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPI-NKEQRDLKLLPAGFVSSSKGTG 295
V P+ E + +L V GTG
Sbjct: 246 V----------------------------------PLFGVE---VPILADPLVDPDFGTG 268
Query: 296 LVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVL----- 350
V + D +P +I G+ + AG L GL I + + +++
Sbjct: 269 AVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGK-LAGLTIE-EARKKIVEDLKS 326
Query: 351 --HLVEPDVLWTENYQHSYPYDWRTKKPV-ILKASQQWFIDTERIKPEAL 397
L + E +H+ + R P+ IL ++QWFI +K E L
Sbjct: 327 GGLLGKQ-----EPIKHNVKFCERCDTPLEIL-VTRQWFIKVLDLKEELL 370
Score = 73.3 bits (181), Expect = 5e-13
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 22/145 (15%)
Query: 1104 HHLNL---ITNQGKYSPDAGPGLEGLNILGEGKDQVL-------HLVEPDVLWTENYQHS 1153
+L I G+ + AG L GL I E + +++ L + E +H+
Sbjct: 287 LNLPTRIIIDEDGRMTEAAGK-LAGLTIE-EARKKIVEDLKSGGLLGKQ-----EPIKHN 339
Query: 1154 YPYDWRTKKPV-ILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPY-W 1211
+ R P+ IL ++QWFI +K E L + +N+ PE + L + I + W
Sbjct: 340 VKFCERCDTPLEIL-VTRQWFIKVLDLKEELLERGKEINWYPEHMRVRLENWIEGLNWDW 398
Query: 1212 CISRQRVWGVPIPVFY--DGDTIIV 1234
CISRQR +G PIPV+Y D I+
Sbjct: 399 CISRQRYFGTPIPVWYCKDCGHPIL 423
Score = 51.3 bits (124), Expect = 3e-06
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 1039 IAKRILYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSR 1090
+ K Y E + S +TL+ + LLR +AP +P + EEV+S L
Sbjct: 657 LVKSRAY-GEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLYGG 707
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of bacterial
and eukaryotic mitochondrial isoleucyl tRNA synthetases.
This domain is found in isoleucyl tRNA synthetases
(IleRS), which belong to the class Ia aminoacyl tRNA
synthetases. It lies C-terminal to the catalytic core
domain, and recognizes and specifically binds to the tRNA
anticodon. This family includes bacterial and eukaryotic
mitochondrial members. IleRS catalyzes the transfer of
isoleucine to the 3'-end of its tRNA.
Length = 180
Score = 166 bits (422), Expect = 5e-47
Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 882 IGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSIS----RYVDVYMLKRLCEFQNTM 937
I IL + +KIR++ R+LLG L++ + ++ +D Y L RL E +
Sbjct: 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEV 60
Query: 938 DTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVL 997
Y +++ + + L NF +LSAFY ++KDRLYCD+ + R S L++I L
Sbjct: 61 REAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDAL 120
Query: 998 LRTVAPIMPHLAEEVYSHLPSRQGTFSSF 1026
L+ +API+P AEEV+ HLP + S F
Sbjct: 121 LKLLAPILPFTAEEVWEHLPGEKKEESVF 149
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 177 bits (450), Expect = 6e-45
Identities = 169/628 (26%), Positives = 267/628 (42%), Gaps = 111/628 (17%)
Query: 453 ATDLHALIWTTTPWSLPANQFIAFNPALEY-SVASVKGANV-IVAKC----LVENLKWTF 506
A L WTTTPW+LP+N + N Y + VK V IV +C +++ LKW
Sbjct: 324 AQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNV 383
Query: 507 QTDIDVVCDFPGQYLQDITYIHPI--------NKEQRDLKLLPAGFVSSSKGTGLVHCAP 558
+ D+ +V F G+ L+ + Y P+ N ++R K+L FV+ GTG+VHCAP
Sbjct: 384 E-DLKIVNRFKGKELKGLRY-KPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAP 441
Query: 559 AHGQDDFLLAL------AEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVL--HLV 610
+G+DDF + EK ++ + G ++ + E N+ D V+ L
Sbjct: 442 TYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVE---EVQNLYIKEADNVIKKKLK 498
Query: 611 EPDVLWTEN-YQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAK- 668
+ L + N HSYP+ WR+ P+I +A WFI E + E ++P K
Sbjct: 499 NENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIPAHIKE 558
Query: 669 KTLRDQIAQRPYWCISRQRVWGVPIPVFYDG--DTIIVNEANIKHFCTL-----IDEHGP 721
K + I WCISR R WG PIP++ D +T+I E+ IKH L I++
Sbjct: 559 KKFHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVICVES-IKHLEELSGVKNINDLHR 617
Query: 722 DFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSG-ISWSHV-----------LKDKPAH 769
F + ++ + + ++ D WF+SG + ++ V K PA
Sbjct: 618 HFIDHIEIKN--PKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPAD 675
Query: 770 VYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDIT 829
EG+DQ GWF + L+ S L APF+N+ +G V+ G KMSK + N
Sbjct: 676 FIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPD----- 730
Query: 830 QGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNS 889
P Y L YG D LR ++ +V + L
Sbjct: 731 ------PLY------------------ILDKYGADSLRLYLIN------SVAVRAENLKF 760
Query: 890 SQDDVQKIRSSLRYLLGVLHNHSESTGSISRYV----------DVYMLKR--------LC 931
+ V ++ S ++L H+ + ++RY Y+ K
Sbjct: 761 QEKGVNEVVKS--FILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFS 818
Query: 932 EFQNTMDTLYGEFQYARASRV---LLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLH 988
Q+ +++ E + + V LL F+ N L+ +Y L +DR+ S+ E L L
Sbjct: 819 SVQSLTKSVHTEMKAYKLYNVLPKLLQFIEN-LTNWYIRLNRDRMR-GSLGEENCLQSLC 876
Query: 989 TLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
T + H+ +AP P + E +Y L
Sbjct: 877 TTYRTLHLFTVLMAPFTPFITEYIYQQL 904
Score = 166 bits (422), Expect = 1e-41
Identities = 132/440 (30%), Positives = 200/440 (45%), Gaps = 75/440 (17%)
Query: 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 76
K +I +DGPP+A G PH GH + I+KD R G V GWDCHGLPIE +
Sbjct: 100 NKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEI 159
Query: 77 -----ITSKDKLLS-PLDI-RKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEY 129
I K+ +L +D+ +K + L+ N E G D++ N Y T DK +
Sbjct: 160 EKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFK-NDYKTMDKTF 218
Query: 130 VKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELE--YK--PD------HVSKSI 179
+++ F LYK +Y+Y+ K + +S T ++ EL YK PD V S
Sbjct: 219 MESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSD 278
Query: 180 YLKIK-------------------LNQVPAHLLEG----------ATDLHALIWTTTPWS 210
+ K++ N + G A L WTTTPW+
Sbjct: 279 FPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWT 338
Query: 211 LPANQFIAFNPALEY-SVASVKGANV-IVAKC----LVESLKWTFQTDIEVVCDFPGQYL 264
LP+N + N Y + VK V IV +C +++ LKW + D+++V F G+ L
Sbjct: 339 LPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVE-DLKIVNRFKGKEL 397
Query: 265 QDITYIHPI--------NKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLAL---- 312
+ + Y P+ N ++R K+L FV+ GTG+VHCAP +G+DDF +
Sbjct: 398 KGLRY-KPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGV 456
Query: 313 --AEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVL--HLVEPDVLWTEN-YQHSY 367
EK ++ + G ++ + E N+ D V+ L + L + N HSY
Sbjct: 457 IDPEKNIFIDPLDANGYFTNEVE---EVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSY 513
Query: 368 PYDWRTKKPVILKASQQWFI 387
P+ WR+ P+I +A WFI
Sbjct: 514 PFCWRSDTPLIYRAIPAWFI 533
Score = 66.9 bits (163), Expect = 7e-11
Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 1138 HLVEPDVLWTEN-YQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPES 1196
L + L + N HSYP+ WR+ P+I +A WFI E + E ++P
Sbjct: 496 KLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIPAH 555
Query: 1197 AK-KSLRDQIAQRPYWCISRQRVWGVPIPVFYDG--DTIIVNEANIKHF 1242
K K + I WCISR R WG PIP++ D +T+I E+ IKH
Sbjct: 556 IKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVICVES-IKHL 603
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 170 bits (433), Expect = 8e-43
Identities = 167/647 (25%), Positives = 260/647 (40%), Gaps = 161/647 (24%)
Query: 461 WTTTPWSLPANQFIAFNPALEYSVASVK--GANVIVAKCLVENL-----------KWTFQ 507
WTTTPW+LP+N + NP Y K G IVA+ + L K
Sbjct: 223 WTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENA 282
Query: 508 TDI-DVVCDFPGQYLQDITY--IHPINKEQRD--LKLLPAGFVSSSKGTGLVHCAPAHGQ 562
+ +V+ PG L Y + E D +++ +V+ GTG+VHCAPA G+
Sbjct: 283 AEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGE 342
Query: 563 DDFLLALAEKI---------PV------LNLITN-QGKYSPDAGPGLEGLNILGDGKDQV 606
DD+ + LA I PV +T+ G+Y DA +I+ K +
Sbjct: 343 DDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADK-----DIIAAIKAKG 397
Query: 607 LHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPES 666
LV+ + HSYP+ WR+ P+I +A WF+ E IK L ++ +VP+
Sbjct: 398 -RLVKSGSI-----THSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWVPDY 451
Query: 667 AK-KTLRDQIAQRPYWCISRQRVWGVPIPVFY--DGDTIIV------------------N 705
K K + + W +SR R WG P+P++ DG+ ++V +
Sbjct: 452 VKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAELEKLSGVKVTDLH 511
Query: 706 EANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSG---ISWSH- 761
I H T+ GP+F V+ D+ D WF+SG ++ H
Sbjct: 512 RHFIDHI-TIPSSRGPEFGVLRRVD----------------DVFDCWFESGSMPYAYIHY 554
Query: 762 -------VLKDKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAK 814
K+ PA EG+DQ GWF + ++ S AL F+N+ +G V+ E G K
Sbjct: 555 PFENKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKK 614
Query: 815 MSKSVGNVISAHDITQ--GAKKLPAY---------------EKSVGNVISAHDITQGAKK 857
MSKS+ N +++ GA L Y E+ V V+ D+
Sbjct: 615 MSKSLKNYPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVVK--DVF----- 667
Query: 858 LPAYGV------DVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNH 911
LP Y + R V A P VP+ L +S + + + +S
Sbjct: 668 LPWYNAYRFLVQNAKRLEVEGGA---PFVPLDLAKLQNSANVLDRWINS----------- 713
Query: 912 SESTGSISRYVDVYMLKRLCEFQNTMDT--LYGEFQYARASRVLLNFVVNELSAFYFTLV 969
+T S+ ++V + M LY Y L+ F+ N L+ Y
Sbjct: 714 --ATQSLVKFV-----------REEMGAYRLYTVVPY------LVKFIDN-LTNIYVRFN 753
Query: 970 KDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
+ RL + + R + L TL+N+ + +AP P E +Y +L
Sbjct: 754 RKRLKGRTGEEDCR-TALSTLYNVLLTSCKVMAPFTPFFTEVLYQNL 799
Score = 169 bits (430), Expect = 2e-42
Identities = 130/430 (30%), Positives = 196/430 (45%), Gaps = 83/430 (19%)
Query: 17 GKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELK- 75
G PE+I +DGPP+A G PH GH + +KDI R + G V GWDCHGLP+E +
Sbjct: 36 GLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEI 95
Query: 76 ----AITSKDKLLSPLDIRKKAKNFALETINTQ-KAEFES----WGVLADWEHNCYHTFD 126
I +D +L + I K N +I T+ E+E G D+E N Y T D
Sbjct: 96 DKKLGIKRRDDVLK-MGIDK--YNEECRSIVTRYSKEWEKTVTRTGRWIDFE-NDYKTMD 151
Query: 127 KEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALA--ESELEYK--PDHVSKSIYLK 182
+++++ F L+++ +Y+ K + +S + +T L+ E+ L YK D
Sbjct: 152 PKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSD--------- 202
Query: 183 IKLNQVPAHL----LEGATDLHALI-WTTTPWSLPANQFIAFNPALEYSVASVK--GANV 235
PA + + G D + + WTTTPW+LP+N + NP Y K G
Sbjct: 203 ------PAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVY 256
Query: 236 IVAKCLVESL-----------KWTFQTDI-EVVCDFPGQYLQDITY--IHPINKEQRD-- 279
IVA+ + +L K + EV+ PG L Y + E D
Sbjct: 257 IVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTA 316
Query: 280 LKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKI---------PV------LNLITN 324
+++ +V+ GTG+VHCAPA G+DD+ + LA I PV +T+
Sbjct: 317 FRVVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTD 376
Query: 325 -QGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQ 383
G+Y DA +I+ K + LV+ + HSYP+ WR+ P+I +A
Sbjct: 377 FSGRYVKDADK-----DIIAAIKAKG-RLVKSGSI-----THSYPFCWRSDTPLIYRAVP 425
Query: 384 QWFIDTERIK 393
WF+ E IK
Sbjct: 426 SWFVKVEEIK 435
Score = 72.8 bits (179), Expect = 8e-13
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 1152 HSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAK-KSLRDQIAQRPY 1210
HSYP+ WR+ P+I +A WF+ E IK L + +VP+ K K + +
Sbjct: 407 HSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWVPDYVKEKRFHNWLENARD 466
Query: 1211 WCISRQRVWGVPIPVFY--DGDTIIV 1234
W +SR R WG P+P++ DG+ ++V
Sbjct: 467 WAVSRSRFWGTPLPIWISDDGEEVVV 492
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 159 bits (404), Expect = 1e-39
Identities = 137/525 (26%), Positives = 206/525 (39%), Gaps = 133/525 (25%)
Query: 545 VSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGL-------N 597
V GTG V PAH +DF + +P++N++ G + + G +GL
Sbjct: 263 VDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGE-YQGLDRFEARKA 321
Query: 598 ILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACL 657
I+ D ++ L LV+ E + HS + R+ + S QWF+ + + AL +
Sbjct: 322 IVADLEELGL-LVK-----IEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAV 375
Query: 658 E--EVNFVPESAKKT-------LRDQIAQRPYWCISRQRVWGVPIPVFYDGD-TIIV--N 705
E E+ FVPE +KT ++D WCISRQ WG IP +YD D + V
Sbjct: 376 ENGEIKFVPERWEKTYFHWMENIQD-------WCISRQLWWGHRIPAWYDEDGEVYVGRE 428
Query: 706 EANIKHFCTLI-DEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISW----- 759
E + L DE D+LD WF S + W
Sbjct: 429 EPEAREKALLTQDE----------------------------DVLDTWFSSAL-WPFSTL 459
Query: 760 -----SHVLKD-KPAHVYMEGMDQINGW----FMSSLLTSVALKHTAPFRNVFLHGFVVD 809
+ LK P V + G D I W M L PF++V++HG V D
Sbjct: 460 GWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGL----HFTGQVPFKDVYIHGLVRD 515
Query: 810 EKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWW 869
E+G KMSKS GNVI D +I YG D LR+
Sbjct: 516 EQGRKMSKSKGNVIDPLD-----------------LID------------KYGADALRFT 546
Query: 870 VAAHASKDPTVPIGKNILNSSQDDVQ-------KIRSSLRYLLGVLHNHSESTGSISRY- 921
+AA AS G++I ++ V+ K+ ++ R++L L
Sbjct: 547 LAALAS------PGRDI-RFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPDPEEL 599
Query: 922 --VDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSIN 979
D ++L RL + ++++ A+R L F+ NE +Y L K L
Sbjct: 600 SLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQ----- 654
Query: 980 GEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFS 1024
A+ + TL + +LR + P MP + EE++ L S
Sbjct: 655 EAAKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAPLGIEES 699
Score = 68.6 bits (169), Expect = 2e-11
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 1147 TENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEG--VNFVPESAKKS---- 1200
E + HS + R+ + S QWF+ + + AL +E + FVPE +K+
Sbjct: 335 IEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHW 394
Query: 1201 ---LRDQIAQRPYWCISRQRVWGVPIPVFYDGD-TIIVNE 1236
++D WCISRQ WG IP +YD D + V
Sbjct: 395 MENIQD-------WCISRQLWWGHRIPAWYDEDGEVYVGR 427
Score = 48.9 bits (118), Expect = 2e-05
Identities = 53/169 (31%), Positives = 74/169 (43%), Gaps = 39/169 (23%)
Query: 27 PPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCH-GLPI--------ELKA- 76
PP G+ H+GHA+N L+DI +R +QG ++PG D H G I +L A
Sbjct: 44 PPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTD-HAG--IATQMVVERQLAAE 100
Query: 77 -ITSKDKLLSPLDIRKKAKNFALETINTQKAEFES-----W---GVLADWEHNCYHTFDK 127
+ D L R+K F LE + K E G DW T D+
Sbjct: 101 GKSRHD--LG----REK---F-LEKVWEWKEESGGTITNQLRRLGASCDWSRE-RFTMDE 149
Query: 128 EY---VKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPD 173
V+ F LY++ IYR + V W P +TAL++ E+EYK
Sbjct: 150 GLSKAVREV---FVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEV 195
Score = 47.0 bits (113), Expect = 6e-05
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 288 VSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGL-------N 340
V GTG V PAH +DF + +P++N++ G + + G +GL
Sbjct: 263 VDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGE-YQGLDRFEARKA 321
Query: 341 ILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 397
I+ D ++ L LV+ E + HS + R+ + S QWF+ + + AL
Sbjct: 322 IVADLEELGL-LVK-----IEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPAL 372
Score = 36.6 bits (86), Expect = 0.088
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 15/73 (20%)
Query: 1038 SIAKRILY-------CD--------SINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEE 1082
A R LY CD + A+ + TL + +LR + P MP + EE
Sbjct: 627 DEAARALYEFIWNEFCDWYLELAKPVLQEAAKRATRATLAYVLEQILRLLHPFMPFITEE 686
Query: 1083 VYSHLPSRQGTFS 1095
++ L S
Sbjct: 687 LWQKLAPLGIEES 699
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 148 bits (375), Expect = 4e-36
Identities = 136/533 (25%), Positives = 209/533 (39%), Gaps = 97/533 (18%)
Query: 527 IHPINKEQRDL-----------KLLP----AGFVSSSKGTGLVHCAPAHGQDDFLLALAE 571
+HP++ L + P A V GTG V PAH +DF +
Sbjct: 245 VHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRH 304
Query: 572 KIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTK 631
+ ++ +I G+ + +AGP L GL+ + + +V L+ L H P +
Sbjct: 305 GLEMITVIGPDGRMTAEAGP-LAGLDRF-EARKEVKRLLAEQGLDRGAKPHVLPLGRCQR 362
Query: 632 KPVILKA--SQQWFIDTERIKPEALACLEEVN-----FVPESAKKTLRDQIAQRPYWCIS 684
IL+ S QW++ RI+P A +E V F+PE T + WCIS
Sbjct: 363 SATILEPLLSDQWYV---RIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCIS 419
Query: 685 RQRVWGVPIPVFY--DGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNV 742
RQ WG IP +Y DG + E C+ + +
Sbjct: 420 RQLWWGHQIPAWYCPDGHVTVARET--PEACSTCG---------------------KAEL 456
Query: 743 TKSNDILDIWFDSGI------SW---SHVLKD-KPAHVYMEGMDQINGWFMSSLLTSVAL 792
+ D+LD WF SG+ W + L+ P V G D I W ++ +
Sbjct: 457 RQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHF 516
Query: 793 KHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDIT 852
PFR V+LH V DEKG KMSK+ GNVI IT
Sbjct: 517 MGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVIT----------------------- 553
Query: 853 QGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHS 912
YG D LR+ +AA ++ + + K + + K+ ++ R+ L L +
Sbjct: 554 ------EQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQ 607
Query: 913 ESTGSISRY----VDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTL 968
E +R D ++L RL N F++ A+ + FV +EL +Y L
Sbjct: 608 ERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIEL 667
Query: 969 VKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQG 1021
K+ L + + EAR S L + R + P MP + EE++ L ++ G
Sbjct: 668 AKEALASE--DPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVG 718
Score = 81.6 bits (201), Expect = 2e-15
Identities = 93/398 (23%), Positives = 159/398 (39%), Gaps = 70/398 (17%)
Query: 13 EALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI 72
E +P F + PP G+ H+GHA+ L+D+ +R + G ++PG D G+
Sbjct: 42 EHDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIAT 101
Query: 73 EL---KAITSKDKLLSPLDIRKKAKNFALETINTQKAEFES--------WGVLADWEHNC 121
++ K + +K S D+ ++A LE + K ++ S G DW+
Sbjct: 102 QMIVEKELKKTEK-KSRHDLGREA---FLERVWAWKEQYGSRIGEQHKALGASLDWQRER 157
Query: 122 YHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIYL 181
+ T D+ + F L+++ IYR+ K + W P RTAL++ E+E++ H +
Sbjct: 158 F-TMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELWSF 216
Query: 182 KIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCL 241
L ++ TT P ++ + +A +P +A G V
Sbjct: 217 AYPLAD---------GSGEIVVATTRPETMLGDTAVAVHPLDPRYMALH-GKKV------ 260
Query: 242 VESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLP-AGFVSSSKGTGLVHCA 300
HPI R ++ A V GTG V
Sbjct: 261 ----------------------------RHPIT--GRTFPIVADAILVDPKFGTGAVKVT 290
Query: 301 PAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWT 360
PAH +DF + + ++ +I G+ + +AGP L GL+ + + +V L+ L
Sbjct: 291 PAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGP-LAGLDRF-EARKEVKRLLAEQGLDR 348
Query: 361 ENYQHSYPYDWRTKKPVILKA--SQQWFIDTERIKPEA 396
H P + IL+ S QW++ RI+P A
Sbjct: 349 GAKPHVLPLGRCQRSATILEPLLSDQWYV---RIEPLA 383
Score = 52.3 bits (125), Expect = 2e-06
Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 17/145 (11%)
Query: 1104 HHLNLIT---NQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVLWTENYQHSYPYDWRT 1160
H L +IT G+ + +AGP L GL+ E + +V L+ L H P
Sbjct: 304 HGLEMITVIGPDGRMTAEAGP-LAGLDRF-EARKEVKRLLAEQGLDRGAKPHVLPLGRCQ 361
Query: 1161 KKPVILKA--SQQWFIDTERIKPEALACLEGVN-----FVPESAKKSLRDQIAQRPYWCI 1213
+ IL+ S QW++ RI+P A +E V F+PE + + WCI
Sbjct: 362 RSATILEPLLSDQWYV---RIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCI 418
Query: 1214 SRQRVWGVPIPVFY--DGDTIIVNE 1236
SRQ WG IP +Y DG + E
Sbjct: 419 SRQLWWGHQIPAWYCPDGHVTVARE 443
Score = 30.7 bits (69), Expect = 6.8
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 1039 IAKRILYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQG 1092
+AK L + + EAR S L + R + P MP + EE++ L ++ G
Sbjct: 667 LAKEALASE--DPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVG 718
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 137 bits (347), Expect = 8e-35
Identities = 68/263 (25%), Positives = 102/263 (38%), Gaps = 59/263 (22%)
Query: 628 WRTKKPVILKASQQWFIDTERIKPEALACLEE--VNFVPESAKKTLRDQIAQRPYWCISR 685
R+ + QWF+ + + +AL ++E + FVPE +K + + WCISR
Sbjct: 157 SRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISR 216
Query: 686 QRVWGVPIPVFY--DGDTIIVNEANIKHFCTLIDEHGPDFWWSLS-VEQLLNTSDVNSNV 742
Q WG IP +Y DG +V + ++ +
Sbjct: 217 QLWWGHRIPAWYCKDGGHWVV---------------AREEDEAIDKAAPEACVPCGGEEL 261
Query: 743 TKSNDILDIWFDSGISWSHVLK--------DK--PAHVYMEGMDQINGWFMSSLLTSVAL 792
+ D+LD WF S + L K P + + G D I W ++ + L
Sbjct: 262 KQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKL 321
Query: 793 KHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDIT 852
PF+ V+LHG V DE G KMSKS+GNVI D+ G
Sbjct: 322 TGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDG--------------------- 360
Query: 853 QGAKKLPAYGVDVLRWWVAAHAS 875
YG D LR+ +A+ A+
Sbjct: 361 --------YGADALRFTLASAAT 375
Score = 100 bits (252), Expect = 2e-22
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 27 PPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELK-----AITSKD 81
PP G+ H+GHA+N ++DI R ++G V + PG D G+ ++ I K
Sbjct: 9 PPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKT 68
Query: 82 KL-LSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNL 140
+ L + +K + E+ + + + G DW Y T D + F L
Sbjct: 69 RHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWS-REYFTMDPGLSRAVQEAFVRL 127
Query: 141 YKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHV-----SKSIYLKIK 184
Y++ IYRD + V W P RTA+++ E+ + V ++K+K
Sbjct: 128 YEKGLIYRDNRLVNWCPKLRTAISDIEVCSRSGDVIEPLLKPQWFVKVK 176
Score = 76.5 bits (189), Expect = 2e-14
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 1158 WRTKKPVILKASQQWFIDTERIKPEALACLE--GVNFVPESAKKSLRDQIAQRPYWCISR 1215
R+ + QWF+ + + +AL ++ + FVPE +K + + WCISR
Sbjct: 157 SRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISR 216
Query: 1216 QRVWGVPIPVFY--DGDTIIV 1234
Q WG IP +Y DG +V
Sbjct: 217 QLWWGHRIPAWYCKDGGHWVV 237
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 134 bits (339), Expect = 2e-34
Identities = 66/265 (24%), Positives = 94/265 (35%), Gaps = 92/265 (34%)
Query: 628 WRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQR 687
+R PV ++QWF D + K + L L VPE K + + W ISRQR
Sbjct: 130 YRGTHPVR--ITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQR 187
Query: 688 VWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSND 747
WG P+P D
Sbjct: 188 YWGTPLP---------------------------------------------------ED 196
Query: 748 ILDIWFDSGIS------WSHVLKDK----PAHVYMEGMDQINGWFMSSLLTSVALKHTAP 797
+ D+WFDSGI + + PA ++ G D + GW + VAL P
Sbjct: 197 VFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIP 256
Query: 798 FRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKK 857
+N+ +HGFV+DE G KMSKS GNVI D+
Sbjct: 257 PKNLLVHGFVLDEGGQKMSKSKGNVIDPSDV----------------------------- 287
Query: 858 LPAYGVDVLRWWVAAHASKDPTVPI 882
+ YG D LR+++ + A + +
Sbjct: 288 VEKYGADALRYYLTSLAPYGDDIRL 312
Score = 119 bits (301), Expect = 2e-29
Identities = 53/141 (37%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Query: 21 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA---I 77
F + PPYANG+ H+GHA+ I+ D R ++G V ++PGWD HGLPIELKA
Sbjct: 2 FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG 61
Query: 78 TSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQF 137
K K + + R+ K F E K +F G+ DW + Y T + EY K F
Sbjct: 62 GRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWS-DEYITTEPEYSKAVELIF 120
Query: 138 YNLYKQDYIYRDLKPVYWSPS 158
LY++ IYR PV +
Sbjct: 121 SRLYEKGLIYRGTHPVRITEQ 141
Score = 63.2 bits (154), Expect = 2e-10
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 1158 WRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQR 1217
+R PV ++QWF D + K + L L VPE K + + W ISRQR
Sbjct: 130 YRGTHPVR--ITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQR 187
Query: 1218 VWGVPIP--VFY 1227
WG P+P VF
Sbjct: 188 YWGTPLPEDVFD 199
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional.
Length = 995
Score = 134 bits (340), Expect = 9e-32
Identities = 132/567 (23%), Positives = 215/567 (37%), Gaps = 107/567 (18%)
Query: 527 IHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYS 586
IHP +++ + V GTG V PAH +D+ +A +P +N+ T GK +
Sbjct: 289 IHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKIN 348
Query: 587 PDAGP---------------GLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTK 631
+ G L+ + +L D P P R+
Sbjct: 349 ENGGEFAGMHRFDCRRKIEEELKEMGLLRD--------KVP-------NPMRLPRCSRSG 393
Query: 632 KPVILKASQQWFIDTERIKPEALACLE--EVNFVPESAKKT-------LRDQIAQRPYWC 682
V QW+++ + + A+ + E+ +P S + ++D WC
Sbjct: 394 DIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQD-------WC 446
Query: 683 ISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLS-VEQLLNTSDVNSN 741
ISRQ WG IP + +I +L ++ S+ +
Sbjct: 447 ISRQLWWGHRIPAY----RVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFE 502
Query: 742 VTKSNDILDIWFDSGI------SWSHVLKDK----PAHVYMEGMDQINGWFMSSLLTSVA 791
+ + D+LD WF SG+ W D P + G D + W ++ S+
Sbjct: 503 LEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLH 562
Query: 792 LKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGA------KKLPAYEKSVGNV 845
L PF+ VFLH V D +G KMSKS GNVI ++ +G +KL +
Sbjct: 563 LTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEI 622
Query: 846 ISAHDITQGAKK-----LPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKI--- 897
A + KK +P G D LR+ + A+ + G+NI D+ ++
Sbjct: 623 KRA---IELQKKEFPNGIPECGTDALRFGLLAYTQQ------GRNINL----DINRVVGY 669
Query: 898 -----------RSSLRYLLGVLHNHSESTGSISRYV------DVYMLKRLCEFQNTMDTL 940
+ +L LL N ST V D ++L RL +
Sbjct: 670 RHFCNKLWNAVKFALMKLLKD-FNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEG 728
Query: 941 YGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRT 1000
+ E+ ++ A++ NF + EL Y L+K RL +GE + LH + + LR
Sbjct: 729 FKEYDFSEATQATYNFWLYELCDVYLELIKPRL-SKQSDGERKQHAQDVLHTVLDIGLRL 787
Query: 1001 VAPIMPHLAEEVYSHLPSRQGTFSSFC 1027
+ P+MP + EE+Y LP+ S
Sbjct: 788 LHPMMPFITEELYQRLPNYLRKSESIS 814
Score = 72.0 bits (177), Expect = 2e-12
Identities = 73/341 (21%), Positives = 129/341 (37%), Gaps = 60/341 (17%)
Query: 13 EALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI 72
++LN +F++ PP G HIGHA+ ++D +R + ++G +VPG D G+
Sbjct: 54 KSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIAT 113
Query: 73 EL---KAITSKDKL----LSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTF 125
++ K + ++ L + KK + + N + G DW T
Sbjct: 114 QVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSRE-VFTM 172
Query: 126 D---KEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIYLK 182
D + VK + Y IYRD + V W +TA+ S++E + + + K +
Sbjct: 173 DEQRSKAVKEAFVRLYE---DGLIYRDTRLVNWCCYLKTAI--SDIEVEFEEIEKPTKIT 227
Query: 183 IKLNQVP---------AHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGA 233
I A+ LE + ++ TT ++ + +A +P
Sbjct: 228 IPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHP------------ 275
Query: 234 NVIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKG 293
E G+ L IHP +++ + V G
Sbjct: 276 ------------------KDERYKKLHGKEL-----IHPFIPDRKIPIIADDELVDMEFG 312
Query: 294 TGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGP 334
TG V PAH +D+ +A +P +N+ T GK + + G
Sbjct: 313 TGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGE 353
Score = 42.3 bits (100), Expect = 0.002
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 1026 FCHFKVYLQYSGSIAKRILYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYS 1085
C VYL+ + +GE + LH + + LR + P+MP + EE+Y
Sbjct: 749 LC--DVYLELIKPRLSK-----QSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQ 801
Query: 1086 HLPSRQGTFSSFC 1098
LP+ S
Sbjct: 802 RLPNYLRKSESIS 814
Score = 32.3 bits (74), Expect = 2.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 1211 WCISRQRVWGVPIP 1224
WCISRQ WG IP
Sbjct: 445 WCISRQLWWGHRIP 458
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 123 bits (309), Expect = 3e-28
Identities = 127/510 (24%), Positives = 220/510 (43%), Gaps = 67/510 (13%)
Query: 535 RDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLE 594
R + ++ +V GTG++ +P H +D+LLA +P+LN++ G + AG
Sbjct: 307 RHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG---- 362
Query: 595 GLNILGDGKDQVLHLVEPDV-LWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEA 653
L + L E + + E + P R + + S+QWF+ E + +A
Sbjct: 363 -LYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKA 421
Query: 654 LACLE--EVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFY------DGDTIIVN 705
L +E E+ +PE +K ++ WCISRQ WG IPV+Y + D I+
Sbjct: 422 LKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVAR 481
Query: 706 EANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGI------SW 759
A + +++G D VE + + D+LD WF S + W
Sbjct: 482 SAE-EALEKAREKYGKD------VE-----------IYQDPDVLDTWFSSALWPFSTLGW 523
Query: 760 SHVLKDK-----PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAK 814
V + P V G D + W ++ + T PF V+LHG + D +G K
Sbjct: 524 PDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRK 583
Query: 815 MSKSVGNVISAHDITQ--GAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAA 872
MSK++GNVI D + G L + ++G + D+ ++L + + W A
Sbjct: 584 MSKTLGNVIDPLDTIKEFGTDAL-RFTLALGT--AGQDLNLSTERLTSNKAFTNKLWNA- 639
Query: 873 HASKDPTVPIGKNILNS--SQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKRL 930
GK +L + SQ D S+ ++L + ES S+ + +++ +L
Sbjct: 640 ----------GKFVLQNLPSQSDT----SAWEHILACKFDKEESLLSLP-LPECWVVSKL 684
Query: 931 CEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTL 990
E +++ T Y ++ + R + +F ++ + +Y K RLY N A L
Sbjct: 685 HELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDN-SALSRAQAVL 743
Query: 991 HNIFHVLLRTVAPIMPHLAEEVYSHLPSRQ 1020
+F +L+ + P MP + EE++ LP R+
Sbjct: 744 LYVFENILKLLHPFMPFVTEELWQALPYRK 773
Score = 70.4 bits (172), Expect = 4e-12
Identities = 82/341 (24%), Positives = 145/341 (42%), Gaps = 61/341 (17%)
Query: 7 LYSWQREALNGKPE-------FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRV 59
+Y+W KP F++ PP G+ H+GHA+ L+DI +R N ++G+
Sbjct: 69 IYNWWESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPT 128
Query: 60 HYVPGWDCHGLPIEL---KAITS---KDKLLSPLDIRKKAKNFALETINTQKAEFESWGV 113
++PG D G+ +L K + S K L + K+ + + T + + G
Sbjct: 129 LWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGA 188
Query: 114 LADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPD 173
DW + T D++ + + F L+++ IY+ V WSP+ +TA+++ E+EY +
Sbjct: 189 SCDWSRERF-TLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS-E 246
Query: 174 HVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALE-YSVASVKG 232
Y+K + + G ++ I TT P +L + IA NP + YS K
Sbjct: 247 EPGTLYYIKYR--------VAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKM 298
Query: 233 ANVIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSK 292
A V + T+ + ++ D +V
Sbjct: 299 AIVPM----------TYGRHVPIIAD---------------------------RYVDKDF 321
Query: 293 GTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAG 333
GTG++ +P H +D+LLA +P+LN++ G + AG
Sbjct: 322 GTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG 362
Score = 45.3 bits (107), Expect = 2e-04
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 1169 SQQWFIDTERIKPEALACLEG--VNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPVF 1226
S+QWF+ E + +AL +E + +PE +K ++ WCISRQ WG IPV+
Sbjct: 407 SKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVW 466
Query: 1227 Y 1227
Y
Sbjct: 467 Y 467
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 113 bits (283), Expect = 5e-25
Identities = 116/545 (21%), Positives = 220/545 (40%), Gaps = 73/545 (13%)
Query: 527 IHPINKEQRDLKLL-PAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKY 585
+HP N R L ++ A V + GTG V PAH +DF + + +N+ T+ GK
Sbjct: 356 VHPFNG--RKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKI 413
Query: 586 SPDAGPGLEGLNILGDGKDQVLHLVEPDVLW--TENYQHSYPYDWRTKKPVILKASQQWF 643
+ + G G+ ++ V+ ++ L+ +N + RT V QWF
Sbjct: 414 NSNGGSEFAGMPRF-AAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWF 472
Query: 644 IDTERIKPEALACL-----EEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD 698
++ + +AL +++ F+P+ + + WCISRQ WG IP +Y
Sbjct: 473 VNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWY- 531
Query: 699 GDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNS-----------NVTKSND 747
+ + + +K + D W ++ N SD +++ D
Sbjct: 532 ---VTLEDDQLKELGSYNDH------WVVA----RNESDALLEASQKFPGKKFELSQDPD 578
Query: 748 ILDIWFDSG------ISWSHVLKD----KPAHVYMEGMDQINGWFMSSLLTSVALKHTAP 797
+LD WF SG + W D P V G D + W ++ + L P
Sbjct: 579 VLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVP 638
Query: 798 FRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGA------KKLPAYEKSVGNVISAHDI 851
FR V+LH + D G KMSKS+GNVI ++ G K+L ++ A +
Sbjct: 639 FRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKE- 697
Query: 852 TQGAKK-----LPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLG 906
G KK + G D LR+ + ++ ++ + + + + K+ +++R+ +
Sbjct: 698 --GQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMS 755
Query: 907 VLHNH--------SESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVV 958
L + E+ +++ + K + + +++D ++++ A+ + ++
Sbjct: 756 KLGDDYTPPATLSVETMPFSCKWILSVLNKAISKTVSSLDA----YEFSDAASTVYSWWQ 811
Query: 959 NELSAFYFTLVKDRLYCDSINGE-ARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLP 1017
+ + +K D+ R + TL LR + P MP + EE++ LP
Sbjct: 812 YQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLP 871
Query: 1018 SRQGT 1022
+
Sbjct: 872 QPKDH 876
Score = 88.4 bits (219), Expect = 2e-17
Identities = 100/413 (24%), Positives = 170/413 (41%), Gaps = 62/413 (15%)
Query: 8 YSWQR-------EALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVH 60
Y+W +A + KP F++ PP G HIGHA+ ++D +R + G
Sbjct: 110 YAWWEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNAL 169
Query: 61 YVPGWDCHGLP----IELKAITSKDKLLSPLDIRK--------KAKNFALETINTQKAEF 108
+VPG D G+ +E K + +++ L+ DI + K K+ TI Q
Sbjct: 170 WVPGVDHAGIATQVVVEKKLM--RERHLTRHDIGREEFVSEVWKWKDEYGGTILNQ---L 224
Query: 109 ESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESEL 168
G DW C+ T D++ K F LYK+ IYRD++ V W + RTA+++ E+
Sbjct: 225 RRLGASLDWSRECF-TMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEV 283
Query: 169 EYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVA 228
+Y + + LK+ P +F LE +
Sbjct: 284 DYI--DIKERTLLKVPGYDKPVEF---------------------GVLTSFAYPLEGGLG 320
Query: 229 SVKGANVIVAKCLVESLKWTFQTDIEVVCDFPG-QYLQDITYIHPINKEQRDLKLL-PAG 286
++VA +E++ T I + D ++L +HP N R L ++ A
Sbjct: 321 E-----IVVATTRIETM--LGDTAIAIHPDDERYKHLHGKFAVHPFNG--RKLPIICDAI 371
Query: 287 FVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGK 346
V + GTG V PAH +DF + + +N+ T+ GK + + G G+ +
Sbjct: 372 LVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRF-AAR 430
Query: 347 DQVLHLVEPDVLW--TENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 397
+ V+ ++ L+ +N + RT V QWF++ + +AL
Sbjct: 431 EAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQAL 483
Score = 41.0 bits (96), Expect = 0.004
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 1106 LNLITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVLW--TENYQHSYPYDWRTKKP 1163
+N+ T+ GK + + G G+ ++ V+ ++ L+ +N + RT
Sbjct: 404 INIFTDDGKINSNGGSEFAGMPRF-AAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDV 462
Query: 1164 VILKASQQWFIDTERIKPEAL-ACLEGVN----FVPESAKKSLRDQIAQRPYWCISRQRV 1218
V QWF++ + +AL A ++G N F+P+ + + WCISRQ
Sbjct: 463 VEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLW 522
Query: 1219 WGVPIPVFY 1227
WG IP +Y
Sbjct: 523 WGHRIPAWY 531
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA. This
domain is found mainly hydrophobic tRNA synthetases. The
domain binds to the anticodon of the tRNA.
Length = 148
Score = 85.5 bits (212), Expect = 3e-19
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 923 DVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEA 982
D ++L RL + + Y ++++ A+ L F N+LS +Y L KDRLY ++ + +
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEAPD--S 58
Query: 983 RLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPS 1018
S L+ + LLR +AP MP + EE++ L
Sbjct: 59 DRSAQTVLYEVLETLLRLLAPFMPFITEELWQKLGK 94
Score = 48.2 bits (115), Expect = 2e-06
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 1026 FCHFKVYLQYSGSIAKRILYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYS 1085
YL+ ++K LY ++ + + S L+ + LLR +AP MP + EE++
Sbjct: 39 LS--DWYLE----LSKDRLYGEAPD--SDRSAQTVLYEVLETLLRLLAPFMPFITEELWQ 90
Query: 1086 HLPS 1089
L
Sbjct: 91 KLGK 94
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 86.2 bits (214), Expect = 6e-17
Identities = 86/313 (27%), Positives = 115/313 (36%), Gaps = 51/313 (16%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPL 87
PY +G H+GH N + D+ R +QG V + GWD GLP E AI
Sbjct: 43 PYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAI---------- 92
Query: 88 DIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIY 147
I + I K + +S G DW T D EY K QF LY++ Y
Sbjct: 93 KIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFA-TCDPEYYKWIQWQFLKLYEKGLAY 151
Query: 148 RDLKPVYWSPSSRTALAESELEYKPDHVSKS-----------IYLKIK--LNQVPAHLLE 194
R PV W P T LA ++ + + KI +++ L +
Sbjct: 152 RKEAPVNWCPVDGTVLANEQV--IDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDK 209
Query: 195 GATDLHALIWTTTPWSLPANQFIAFNPALEYSVA-SVKGANVIVAKCLVESLKWTFQTDI 253
AT + +I P+ Y VA V G IV+ + + T +
Sbjct: 210 LATLWPETVKGMQ------RNWI--GPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLF-GV 260
Query: 254 EVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDD--FLLA 311
V P L +P L A FV KGTG+V PAH + D FL
Sbjct: 261 TYVVLAPEHPLVGKLVTNPQ-------TPLVAEFVDECKGTGVVESVPAHAEKDGVFLGG 313
Query: 312 LA------EKIPV 318
A EKIPV
Sbjct: 314 YAINPVNGEKIPV 326
Score = 80.4 bits (199), Expect = 4e-15
Identities = 101/526 (19%), Positives = 165/526 (31%), Gaps = 146/526 (27%)
Query: 527 IHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYS 586
I+P+N E+ + + A +V GTG V PAH + D A K+P+ +I
Sbjct: 316 INPVNGEK--IPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVI------- 366
Query: 587 PDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQW-FID 645
+ V V + +L S +D
Sbjct: 367 --------------MPEGTVGKKVY-------------------EGEGVLINSGGLDGLD 393
Query: 646 TERIKPEALAC-LEEVNFVPESAKKT---LRDQIAQRPYWCISRQRVWGVPIPVFYDGD- 700
E + C L + LRD W SRQR WG PIP+ + D
Sbjct: 394 YEE-AKVKIRCGLVKRG---LGQWFVNYRLRD-------WLKSRQRYWGEPIPIIHCEDC 442
Query: 701 ---TIIVNEANIKHFCTL-IDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSG 756
+ + +K + G W E+ + S +S + D +D + DS
Sbjct: 443 GVVPVPEDWLPVKLPERVRGLGTGSPLPWD---EEWVIESLPDSTAYRETDTMDTFIDS- 498
Query: 757 ISW-------------SHVLKDK-----PAHVYMEGMDQINGWFMSSLLTSVALK----- 793
SW +++ P +Y+ G++ + AL
Sbjct: 499 -SWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLV 557
Query: 794 -HTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDIT 852
PF+ + G V+ E+G KMSKS GNV+ + +
Sbjct: 558 PKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVE---------------------- 595
Query: 853 QGAKKLPAYGVDVLRWWV--AAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHN 910
YG D +R ++ AA +D L S+ V+ R L+ + ++
Sbjct: 596 -------KYGADTVRLYIMFAAPPEQD---------LEWSESGVEGARRFLQRVWNLVKE 639
Query: 911 HSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVK 970
H E + L + + +R N + L L+
Sbjct: 640 HLEKLVEELTKEQGKEDRWL------LHRTIKKVTEDFEARQTFNTAIAAL----MELLN 689
Query: 971 DRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
R L +R +AP PH+AEE++ L
Sbjct: 690 ALRKYLRRTEGDR----KVLREALETWVRLLAPFAPHIAEELWEEL 731
Score = 36.9 bits (86), Expect = 0.076
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 7/29 (24%)
Query: 1200 SLRDQIAQRPYWCISRQRVWGVPIPVFYD 1228
LRD W SRQR WG PIP+ +
Sbjct: 418 RLRD-------WLKSRQRYWGEPIPIIHC 439
Score = 31.9 bits (73), Expect = 2.9
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 270 IHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQG 326
I+P+N E+ + + A +V GTG V PAH + D A K+P+ +I +G
Sbjct: 316 INPVNGEK--IPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEG 370
Score = 31.9 bits (73), Expect = 3.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1060 TLHNIFHVLLRTVAPIMPHLAEEVYSHL 1087
L +R +AP PH+AEE++ L
Sbjct: 704 VLREALETWVRLLAPFAPHIAEELWEEL 731
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 86.3 bits (214), Expect = 6e-17
Identities = 85/358 (23%), Positives = 133/358 (37%), Gaps = 61/358 (17%)
Query: 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELK 75
+ KP++ + PY +G H+GH N + D+ R ++G V + GWD GLP E
Sbjct: 26 SSKPKYYILSMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPIGWDAFGLPAENA 85
Query: 76 AITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLC 135
AI + E I K + ++ G DW+ T D EY K
Sbjct: 86 AIKRG----------IHPAKWTYENIANMKKQLQALGFSYDWDRE-IATCDPEYYKWTQW 134
Query: 136 QFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVS------------KSIYLKI 183
F L+++ Y V W P+ T LA +++ D S K +LKI
Sbjct: 135 IFLELFEKGLAYVKEADVNWCPNDGTVLANEQVD--SDGRSWRGDTPVEKKELKQWFLKI 192
Query: 184 ------------KLNQVPAHLL----------EGA--------TDLHALIWTTTPWSLPA 213
+L+ P + EG D ++TT P ++
Sbjct: 193 TAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIADHDEKITVFTTRPDTIFG 252
Query: 214 NQFIAFNPALEYSVAS-VKGANVIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHP 272
++A A E+ + N VA + + L T + + G I IHP
Sbjct: 253 VTYLAL--APEHPLVEKAAENNPKVAAFIKKILNKTVAERTKATKEKKGVDT-GIKAIHP 309
Query: 273 INKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSP 330
+ E+ + + A +V GTG V PAH + DF A +P+ +I K
Sbjct: 310 LTGEK--IPIWVANYVLMEYGTGAVMGVPAHDERDFEFAQKYGLPIKPVIDPAEKDLS 365
Score = 57.5 bits (139), Expect = 4e-08
Identities = 110/614 (17%), Positives = 196/614 (31%), Gaps = 135/614 (21%)
Query: 460 IWTTTPWSLPANQFIAFNPALEYSVAS-VKGANVIVAKCLVENLKWTFQTDIDVVCDFPG 518
++TT P ++ ++A A E+ + N VA + + L T + G
Sbjct: 242 VFTTRPDTIFGVTYLAL--APEHPLVEKAAENNPKVAAFIKKILNKTVAERTKATKEKKG 299
Query: 519 QYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNL 578
I IHP+ E+ + + A +V GTG V PAH + DF A +P+ +
Sbjct: 300 VDT-GIKAIHPLTGEK--IPIWVANYVLMEYGTGAVMGVPAHDERDFEFAQKYGLPIKPV 356
Query: 579 ITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKA 638
I K E DG + + + A
Sbjct: 357 IDPAEKDLSLTAAYTE------DGVL------------VNSGEFN-----GLNSSEARNA 393
Query: 639 SQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFY- 697
+ K +VN+ LRD W SRQR WG PIP+ +
Sbjct: 394 IIDMLEKEGKGK-------RKVNY-------RLRD-------WGFSRQRYWGEPIPIIHC 432
Query: 698 -DGDTIIVNEANIKHFCTLIDEHGPDFWWSLS-VEQLLNTSDVN--SNVTKSNDILDIWF 753
DG + V E ++ + D LS + + +N + + + D +D +
Sbjct: 433 EDGGVVPVPEEDLPVILPEDVVYDGDGGSPLSRIPEWVNVTCPSCGKPALRETDTMDTFA 492
Query: 754 DSGISW----------SHVLKDK-------PAHVYMEG-----MDQINGWFMSSLLTSVA 791
S SW + DK P +Y+ G + + F L +
Sbjct: 493 GS--SWYYLRYLDPKNTDGPFDKEKAEYWLPVDLYIGGIEHAILHLLYARFFHKFLRDIG 550
Query: 792 LKHT-APFRNVFLHGFV----VDEKGAKMSKSVGNVISAHDITQGAKKLPAY----EKSV 842
+T PF+ + G V G + + G + + KS
Sbjct: 551 YVNTKEPFKKLINQGMVLGFYYPPNGKVPADVLTERDEKGKDKAGGELVYVGYEKMSKSK 610
Query: 843 GNVISAHDITQGAKKLPAYGVDVLRWWV--AAHASKDPTVPIGKNILNSSQDDVQKIRSS 900
GN I +I + +YG D LR ++ + L ++ ++ R
Sbjct: 611 GNGIDPQEI------VESYGADALRLFIMFMGPIAAS---------LEWNESGLEGARRF 655
Query: 901 LRYLLGVLHNHSESTGSISRYVDVY-----MLKRLCEFQNTMDTLYGEFQYARASRVLLN 955
L + +++ + + S V L+R + + + + + + N
Sbjct: 656 LDRVWNLVYEITGELDAASLTVTALEEAQKELRR--DVHKFLKKVTEDLEKRES----FN 709
Query: 956 FVVNELSAFYFTLVK---DRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEV 1012
++ + L K + L + ++P PHLAEE+
Sbjct: 710 TAISAMMELLNKLYKAKKEALML----------------EYLKGFVTVLSPFAPHLAEEL 753
Query: 1013 YSHLPSRQGTFSSF 1026
+ L S +
Sbjct: 754 WEKLGSEPFIIDNA 767
Score = 37.0 bits (86), Expect = 0.084
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 1201 LRDQIAQRPYWCISRQRVWGVPIPVFYDGD 1230
LRD W SRQR WG PIP+ + D
Sbjct: 412 LRD-------WGFSRQRYWGEPIPIIHCED 434
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 86.4 bits (214), Expect = 6e-17
Identities = 77/313 (24%), Positives = 132/313 (42%), Gaps = 36/313 (11%)
Query: 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI--- 72
+ + +F L PY NG H GH + +++ R ++GK V + G+ G PI
Sbjct: 22 DDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGL 81
Query: 73 ----------------ELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLAD 116
E+ AI +++LL D + F+ E ++ +S G D
Sbjct: 82 AELIKRRDELTIKNYTEVHAI-PREELLKFTDPEYIVEYFSREA----ESACKSMGYSID 136
Query: 117 WEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVS 176
W + + T D Y + Q L + I + PV + P + + +L + V+
Sbjct: 137 WRRS-FKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPVEDHDLL-SGEGVT 194
Query: 177 KSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVI 236
Y+ IK L +GA A T P ++ NP + Y +A V G I
Sbjct: 195 IVEYILIKFE-----LEDGAFYFVAA--TLRPETVYGVTNCWVNPTITYVIAEVGGEKWI 247
Query: 237 VAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGL 296
+K E+L + + + + + PG+ +P+ ++ +LPA FV ++KGTG+
Sbjct: 248 TSKEAFENLSYQ-KLKYKPIEEVPGKQFIGKKVHNPVV--GPEVPILPAEFVDTTKGTGV 304
Query: 297 VHCAPAHGQDDFL 309
V PAH DD++
Sbjct: 305 VMSVPAHAPDDYI 317
Score = 58.7 bits (142), Expect = 2e-08
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 477 NPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRD 536
NP + Y +A V G I +K ENL + + + + PG+ +P+ +
Sbjct: 231 NPTITYVIAEVGGEKWITSKEAFENLSYQ-KLKYKPIEEVPGKQFIGKKVHNPVV--GPE 287
Query: 537 LKLLPAGFVSSSKGTGLVHCAPAHGQDDFL 566
+ +LPA FV ++KGTG+V PAH DD++
Sbjct: 288 VPILPAEFVDTTKGTGVVMSVPAHAPDDYI 317
Score = 53.3 bits (128), Expect = 9e-07
Identities = 76/396 (19%), Positives = 134/396 (33%), Gaps = 90/396 (22%)
Query: 641 QWFID--TERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD 698
QWF+ E K A CLE + +PE K +I W R+ G +P +D
Sbjct: 445 QWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLP--WD 502
Query: 699 GDTII------------------VNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDV-N 739
+I +N+ + ++ +F+ + L DV N
Sbjct: 503 EKWLIESLSDSTIYMAYYTIAHYLNKDYYGN-----EQMTDEFFDYI----FLGKGDVKN 553
Query: 740 SNVTKSNDILDIWFDSGISWSHVLKDKPAHVYMEGMDQINGWFMSSLLTSVAL--KHTAP 797
+N+ + W P + G D I + VA+ + P
Sbjct: 554 TNIPL--PAIQKLRREFEYWY------PLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWP 605
Query: 798 FRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKK 857
R + ++G+V+ E G KMSKS GNV++ A EK
Sbjct: 606 -RGIVVNGYVMLE-GKKMSKSKGNVLTLEQ---------AVEK----------------- 637
Query: 858 LPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGS 917
+G DV R ++A A ++ + + ++++ + + TG
Sbjct: 638 ---FGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKESNLE---TGE 691
Query: 918 ISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDS 977
+ ++D ++ R+ FQ +A + L F L D +
Sbjct: 692 ETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYAL-----------FDLQADVDWYRR 740
Query: 978 INGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVY 1013
G + L ++ +AP PH AEE++
Sbjct: 741 -RGGVNHKDV--LARYLETWIKLLAPFAPHFAEEMW 773
Score = 38.3 bits (89), Expect = 0.036
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 1171 QWFID--TERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIP 1224
QWF+ E K A CLEG+ +PE K + +I W R+ G +P
Sbjct: 445 QWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLP 500
Score = 31.3 bits (71), Expect = 4.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 1061 LHNIFHVLLRTVAPIMPHLAEEVY 1084
L ++ +AP PH AEE++
Sbjct: 750 LARYLETWIKLLAPFAPHFAEEMW 773
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 86.1 bits (214), Expect = 8e-17
Identities = 77/327 (23%), Positives = 121/327 (37%), Gaps = 72/327 (22%)
Query: 34 PHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI----------------ELKAI 77
H+GH + D+ R ++G V + + G PI K++
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSL 60
Query: 78 --TSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLC 135
+++L D + F+ E + G DW + T D EY K
Sbjct: 61 YGIPEEELEKFKDPEYIVEYFSEEAKED----MKRIGYSIDWRRE-FTTTDPEYSKFIEW 115
Query: 136 QFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSI--YLKIKLNQ-----V 188
QF L ++ I + PV + P+ + + +L D I Y IK + +
Sbjct: 116 QFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDL---LDGEEPEIVEYTLIKFEESEDLIL 172
Query: 189 PAHLLE-----GATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVE 243
PA L G T+ +W NP Y A V G IV+K E
Sbjct: 173 PAATLRPETIFGVTN----LWV--------------NPDATYVKAEVDGEKWIVSKEAAE 214
Query: 244 SLKWTFQ-TDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPA 302
L FQ D+E++ + G L +P+ + ++ +LPA FV GTG+V PA
Sbjct: 215 KLS--FQDRDVEIIEEIKGSELIGKKVKNPVTGK--EVPILPADFVDPDNGTGVVMSVPA 270
Query: 303 H-----------GQDDFLLALAEKIPV 318
H ++ LL + E IP+
Sbjct: 271 HAPYDYVALRDLKKNKELLDVIEPIPL 297
Score = 65.3 bits (160), Expect = 2e-10
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 16/111 (14%)
Query: 477 NPALEYSVASVKGANVIVAKCLVENLKWTFQ-TDIDVVCDFPGQYLQDITYIHPINKEQR 535
NP Y A V G IV+K E L FQ D++++ + G L +P+ +
Sbjct: 191 NPDATYVKAEVDGEKWIVSKEAAEKLS--FQDRDVEIIEEIKGSELIGKKVKNPVTGK-- 246
Query: 536 DLKLLPAGFVSSSKGTGLVHCAPAH-----------GQDDFLLALAEKIPV 575
++ +LPA FV GTG+V PAH ++ LL + E IP+
Sbjct: 247 EVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPL 297
Score = 54.9 bits (133), Expect = 2e-07
Identities = 53/229 (23%), Positives = 82/229 (35%), Gaps = 60/229 (26%)
Query: 794 HTAPF------RNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVIS 847
H A F R + ++GFV+ E G KMSKS GNVI +
Sbjct: 552 HVAIFPEEKWPRGIVVNGFVLLE-GKKMSKSKGNVIPLRKAIE----------------- 593
Query: 848 AHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGV 907
YG DV+R ++ + A + + +V+ +R L +
Sbjct: 594 ------------EYGADVVRLYLTSSAELLQD-------ADWREKEVESVRRQLERFYEL 634
Query: 908 LHNHSESTGSIS-RYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYF 966
E G R++D ++L RL FQ A V E ++
Sbjct: 635 AKELIEIGGEEELRFIDKWLLSRLNRIIKETTEAMESFQTRDA--------VQEA---FY 683
Query: 967 TLVKD-RLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYS 1014
L+ D R Y + L + + +R +AP PHLAEE++
Sbjct: 684 ELLNDLRWYLRRVGEANN----KVLREVLEIWIRLLAPFTPHLAEELWH 728
Score = 38.3 bits (90), Expect = 0.031
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 641 QWFID--TERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIP 694
QWFID K A L+ + +PE +K + I +R+R G +P
Sbjct: 398 QWFIDYSDPEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLP 453
Score = 37.9 bits (89), Expect = 0.039
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 1171 QWFID--TERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIP 1224
QWFID K A L+ + +PE +K + I +R+R G +P
Sbjct: 398 QWFIDYSDPEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLP 453
>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA
synthetases. This domain is found in valyl tRNA
synthetases (ValRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ValRS catalyzes the transfer
of valine to the 3'-end of its tRNA.
Length = 135
Score = 72.2 bits (178), Expect = 7e-15
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 902 RYLLGVLHNHSESTGSISRY--VDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVN 959
R++L L + E D ++L RL + + ++++ A+ L F N
Sbjct: 21 RFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWN 80
Query: 960 ELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
+ +Y LVK RLY + E + + TL+ + +LR + P MP + EE++ L
Sbjct: 81 DFCDWYLELVKPRLYGED--EEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135
Score = 47.2 bits (113), Expect = 5e-06
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 1039 IAKRILYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1087
+ K LY + E + + TL+ + +LR + P MP + EE++ L
Sbjct: 89 LVKPRLYGED--EEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 72.7 bits (179), Expect = 2e-13
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 11/128 (8%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPL 87
PY +G H+GH + DI R +QG V + G+D GLP E AI
Sbjct: 9 PYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAI---------- 58
Query: 88 DIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIY 147
I + +++ I K + + G DW T D EY K F LY++ Y
Sbjct: 59 KIGRDPEDWTEYNIKKMKEQLKRMGFSYDWRREFT-TCDPEYYKFTQWLFLKLYEKGLAY 117
Query: 148 RDLKPVYW 155
+ PV W
Sbjct: 118 KKEAPVNW 125
Score = 49.2 bits (118), Expect = 7e-06
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 1150 YQHSYPYDWRTKKPVILKASQQWFIDTER--IKPEALACLEGVNFVPESAKKSLRDQIAQ 1207
Y+ P +W QWF+ K + L LE ++ PE + + I
Sbjct: 117 YKKEAPVNWCKLLD-------QWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIG- 168
Query: 1208 RPYWCISRQRVWGVPIPV 1225
SRQR WG PIP
Sbjct: 169 -----CSRQRYWGTPIPW 181
Score = 48.0 bits (115), Expect = 2e-05
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 15/78 (19%)
Query: 620 YQHSYPYDWRTKKPVILKASQQWFIDTER--IKPEALACLEEVNFVPESAKKTLRDQIAQ 677
Y+ P +W QWF+ K + L LE+++ PE + + I
Sbjct: 117 YKKEAPVNWCKLLD-------QWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIG- 168
Query: 678 RPYWCISRQRVWGVPIPV 695
SRQR WG PIP
Sbjct: 169 -----CSRQRYWGTPIPW 181
Score = 36.8 bits (86), Expect = 0.059
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 792 LKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQ 830
L P + + + G V+ E G KMSKS GNV++ + +
Sbjct: 254 LVTDEPPKGLIVQGMVLLE-GEKMSKSKGNVVTPDEAIK 291
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 71.9 bits (177), Expect = 5e-13
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 17/144 (11%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPL 87
PY NG PHIGH I D+ R L+G V +V G D HG IEL A ++P
Sbjct: 8 PYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKEG---VTPQ 64
Query: 88 DIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQ-FYN-LYKQDY 145
+ K F+ + + D + T + + + L Q F+ LY++
Sbjct: 65 E-------LVDRYHEEFKELFKKFNISFD---DFIRTTSERHKE--LVQEFFLKLYEKGD 112
Query: 146 IYRDLKPVYWSPSSRTALAESELE 169
IY ++ S L + +E
Sbjct: 113 IYEGEYEGWYCVSDERFLPDRYVE 136
Score = 41.5 bits (98), Expect = 0.002
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 36/103 (34%)
Query: 799 RNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKL 858
VF HG++ E G KMSKS GNV+ ++
Sbjct: 310 TQVFAHGWLTVE-GGKMSKSRGNVVDPDELLD---------------------------- 340
Query: 859 PAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSL 901
YGVD LR+++A A P GK+ S +D V+++ S L
Sbjct: 341 -RYGVDALRYYLAREA------PEGKDGDFSWEDFVERVNSEL 376
Score = 37.2 bits (87), Expect = 0.055
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 12/108 (11%)
Query: 600 GDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEE 659
GD + +EP L P + LK + +F + + + L ++E
Sbjct: 149 GDQCEVCGRPLEPTELIN-------PRSAISGSTPELKEEEHYFFRLSKFQDKLLEWIKE 201
Query: 660 VNFVPES-AKKTLRDQIAQ--RPYWCISRQRVWGVPIPVFYDGDTIIV 704
P S + + + + + I+R WG+P+P G I V
Sbjct: 202 NPDEPPSNVNEVVLSWLKEGLKD-LSITRDLDWGIPVP-GDPGKVIYV 247
Score = 35.3 bits (82), Expect = 0.19
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 12/100 (12%)
Query: 1138 HLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPES- 1196
+EP L P + LK + +F + + + L ++ P S
Sbjct: 157 RPLEPTELIN-------PRSAISGSTPELKEEEHYFFRLSKFQDKLLEWIKENPDEPPSN 209
Query: 1197 AKKSLRDQIAQ--RPYWCISRQRVWGVPIPVFYDGDTIIV 1234
+ + + + + I+R WG+P+P G I V
Sbjct: 210 VNEVVLSWLKEGLKD-LSITRDLDWGIPVP-GDPGKVIYV 247
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 72.3 bits (178), Expect = 8e-13
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 17/145 (11%)
Query: 27 PPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKL-LS 85
PY NG PH+GH + D+ R L+G V ++ G D HG IELKA +K ++
Sbjct: 13 LPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKA----EKEGIT 68
Query: 86 PLDI-RKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQD 144
P ++ K + F K F++ + D N T E+ + F LY+
Sbjct: 69 PQELVDKNHEEF--------KELFKALNISFD---NFIRTTSPEHKELVQEFFLKLYENG 117
Query: 145 YIYRDLKPVYWSPSSRTALAESELE 169
IY + S L + +E
Sbjct: 118 DIYLREYEGLYCVSCERFLPDRYVE 142
Score = 70.8 bits (174), Expect = 3e-12
Identities = 81/449 (18%), Positives = 152/449 (33%), Gaps = 125/449 (27%)
Query: 600 GDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEE 659
GD + ++P L P + ++ + +F + + + L E
Sbjct: 155 GDQCENCGRTLDPTELIN-------PVCVISGATPEVREEEHYFFRLSKFQDKLLEWYES 207
Query: 660 -VNFV-PESAKKTLRDQIAQ--RPYWCISRQRV-WGVPIPVFYDGDTIIVNEANIKHFCT 714
+F+ P + + + + + + + I+R + WG+P+P G I V
Sbjct: 208 NPDFIWPANRRNEVLNFLKEGLKD-LSITRTDLDWGIPVP-GDPGKVIYV---------- 255
Query: 715 LIDEHGPDFWWSLSVEQLLN--TSDVN-SNVTKSNDILDIWFDSGISWSHVL-KDK-PAH 769
W + L+ ++ + + D W H + KD H
Sbjct: 256 ----------W---FDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFH 302
Query: 770 -VYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDI 828
VY M L + L +F HGF+ E G KMSKS GNV+ ++
Sbjct: 303 AVYWPAM-----------LMAAGLP---LPTRIFAHGFLTLE-GQKMSKSRGNVVDPDEL 347
Query: 829 TQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILN 888
+ YGVD LR+++A +P G +
Sbjct: 348 LE-----------------------------QYGVDALRYYLAR------ELPEGSDGDF 372
Query: 889 SSQDDVQKIRSSLRYLLGVLHN------HSESTGSISRYVDV---YMLKRLCEFQNTMDT 939
S +D V+++ + L LG L N + G + + L + ++
Sbjct: 373 SWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEA 432
Query: 940 ---LYGEFQYARASRVLLNFV--VNELSAFYF------TLVKDRLYCDSINGEARL-SGL 987
++++ +A ++ N+ Y L K+ + RL + L
Sbjct: 433 VAEAMEKYEFRKALEEIMALASRANK----YIDEQAPWKLAKE-------DKRERLATVL 481
Query: 988 HTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
+ + VL + P MP AE+++ L
Sbjct: 482 YLALELVRVLAILLYPFMPETAEKIWDQL 510
Score = 37.6 bits (88), Expect = 0.049
Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 1155 PYDWRTKKPVILKASQQWFIDTERIKPEALACLEG-VNFV-PESAKKSLRDQIAQ--RPY 1210
P + ++ + +F + + + L E +F+ P + + + + + + +
Sbjct: 173 PVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKD- 231
Query: 1211 WCISRQRV-WGVPIP-----VFY 1227
I+R + WG+P+P V Y
Sbjct: 232 LSITRTDLDWGIPVPGDPGKVIY 254
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 66.4 bits (163), Expect = 2e-11
Identities = 38/140 (27%), Positives = 54/140 (38%), Gaps = 17/140 (12%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPL 87
PY NG PH+GH +L D+ R L+G V +V G D HG IE KA ++P
Sbjct: 9 PYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEG---VTPQ 65
Query: 88 DIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQ--FYNLYKQDY 145
+ + K F+ + D T + + + Q F LY+ Y
Sbjct: 66 E-------LCDKYHEIFKDLFKWLNISFD---YFIRTTSPRHKE--IVQEFFKKLYENGY 113
Query: 146 IYRDLKPVYWSPSSRTALAE 165
IY + S L E
Sbjct: 114 IYEGEYEGLYCVSCERFLPE 133
Score = 47.9 bits (115), Expect = 2e-05
Identities = 50/255 (19%), Positives = 77/255 (30%), Gaps = 89/255 (34%)
Query: 635 ILKASQQWFIDTERIKPEALACLE--EVNFVPESAKKTLRDQIAQ--RPYWCISRQRV-W 689
+ + +F + + L LE PE+A+ + + + + I+R W
Sbjct: 133 EWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKD-LSITRDLFDW 191
Query: 690 GVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLN----TSDVNSNVTKS 745
G+P+P G I V W + L+ T N S
Sbjct: 192 GIPVP-LDPGKVIYV--------------------W---FDALIGYISATGYYNEEWGNS 227
Query: 746 NDILDIWFDSGISWSHVLKDKPAHVYMEGMDQINGWFMS-----SLLTSVALKHTAPFRN 800
D W P V+ G D I F + LL P
Sbjct: 228 WWWKDGW--------------PELVHFIGKDII--RFHAIYWPAMLL---GAGLPLP-TR 267
Query: 801 VFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPA 860
+ HG++ E G KMSKS GNV+ D+ +
Sbjct: 268 IVAHGYLTVE-GKKMSKSRGNVVDPDDLLE-----------------------------R 297
Query: 861 YGVDVLRWWVAAHAS 875
YG D LR+++
Sbjct: 298 YGADALRYYLLRERP 312
Score = 35.2 bits (82), Expect = 0.21
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 1165 ILKASQQWFIDTERIKPEALACLEG--VNFVPESAKKSLRDQIAQ--RPYWCISRQRV-W 1219
+ + +F + + L LE PE+A+ + + + + I+R W
Sbjct: 133 EWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKD-LSITRDLFDW 191
Query: 1220 GVPIPVFYDGDTIIV 1234
G+P+P G I V
Sbjct: 192 GIPVP-LDPGKVIYV 205
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 67.1 bits (165), Expect = 4e-11
Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 19/124 (15%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKL-LSP 86
PYANG H+GH V I DI +R ++G V +V D HG PI LKA +K ++P
Sbjct: 11 PYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKA----EKEGITP 66
Query: 87 LDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQ-FYN-LYKQD 144
+ K +F +G+ D N T +E +L Q Y L +
Sbjct: 67 EE-------LIARYHAEHKRDFAGFGISFD---NYGSTHSEENR--ELAQEIYLKLKENG 114
Query: 145 YIYR 148
YIY
Sbjct: 115 YIYE 118
Score = 49.4 bits (119), Expect = 1e-05
Identities = 56/246 (22%), Positives = 88/246 (35%), Gaps = 78/246 (31%)
Query: 794 HTAPFRNVFLHGFV-VDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDIT 852
+ P NVF HGF+ V+ GAKMSKS G I A Y
Sbjct: 311 YRLP-TNVFAHGFLTVE--GAKMSKSRGTFIWART----------Y-------------- 343
Query: 853 QGAKKLPAYGVDVLRWWVAAHAS---KDPTVPIGKNILNSSQDD-VQKIRSSLRYLLGVL 908
L D LR+++AA D L+ + +D Q++ S L +G +
Sbjct: 344 --LDHLDP---DYLRYYLAAKLPETIDD---------LDFNWEDFQQRVNSEL---VGKV 386
Query: 909 HNH-SESTGSISRY---------VDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNF-- 956
N S + G I++ D +L+ + Y ++ +A R ++
Sbjct: 387 VNFASRTAGFINKRFDGKLPDALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALAD 446
Query: 957 VVNELSAFYFT------LVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAE 1010
N+ Y L K +GE + N+F L + P++P LAE
Sbjct: 447 FANK----YVDDNEPWKLAKQ-------DGERLQAVCSVGLNLFRALAIYLKPVLPELAE 495
Query: 1011 EVYSHL 1016
+ L
Sbjct: 496 RAEAFL 501
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 64.5 bits (158), Expect = 2e-10
Identities = 39/123 (31%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 28 PYANGTPHIGHAVNKILK-DITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKL-LS 85
PYANG H+GH L D+ R L+G V +V G D HG PIEL A K ++
Sbjct: 12 PYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAA----KKEGVT 67
Query: 86 PLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFY-NLYKQD 144
P ++ K K +F+ G+ D E V+ F+ LY+
Sbjct: 68 PQELADKYH-------EEHKEDFKKLGISYDLFTRTTSPNHHEVVQE----FFLKLYENG 116
Query: 145 YIY 147
YIY
Sbjct: 117 YIY 119
Score = 52.1 bits (126), Expect = 2e-06
Identities = 67/410 (16%), Positives = 128/410 (31%), Gaps = 111/410 (27%)
Query: 635 ILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQ--RPYWCISRQRVWGVP 692
+ ++ +F+D A +E P + + + + +P I+R WG+P
Sbjct: 182 EFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKP-RAITRDLDWGIP 240
Query: 693 IPV-FYDGDTIIV-NEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILD 750
+P ++G V +A I + + W+ +
Sbjct: 241 VPWPGFEGKVFYVWFDAVIGYISASKE-------WAE-------------RTGDPEAWKE 280
Query: 751 IWFDSGISWSHVLKDKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFR---NVFLHGFV 807
W D Y G D I F S + ++ L P + + ++
Sbjct: 281 FWLDPET----------KSYYFIGKDNIP--FHSIIWPAMLLGSGEPLKLPDEIVSSEYL 328
Query: 808 VDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLR 867
E G K SKS G I D L Y D LR
Sbjct: 329 TLE-GGKFSKSRGWGIWVDDA-----------------------------LERYPPDYLR 358
Query: 868 WWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNH-SESTGSISRY----- 921
+++AA+A P + + ++ V+++ S L N + I +Y
Sbjct: 359 YYLAANA------PENSDTDFTWEEFVRRVNSE---LADKYGNLVNRVLSFIEKYFGGIV 409
Query: 922 -------VDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVV--NELSAFYF------ 966
D ++ + L ++ +A ++ N+ Y
Sbjct: 410 PPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANK----YLDEKAPW 465
Query: 967 TLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
L K + E + L+T N+ +L + P +P A++++ L
Sbjct: 466 KLAKT-------DRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEML 508
Score = 38.3 bits (90), Expect = 0.027
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 1165 ILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIAQ--RPYWCISRQRVWGVP 1222
+ ++ +F+D A +E P + + + + +P I+R WG+P
Sbjct: 182 EFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKP-RAITRDLDWGIP 240
Query: 1223 IPV-FYDGDTIIV 1234
+P ++G V
Sbjct: 241 VPWPGFEGKVFYV 253
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 63.9 bits (156), Expect = 3e-10
Identities = 44/143 (30%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPL 87
PYANG PH+GHA IL D+ R L+G V +V G D HG IELKA + + L+P
Sbjct: 8 PYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKA---EQEGLTPK 64
Query: 88 DIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYN-LYKQDYI 146
++ K + F+ + D EH KE V+ + L + YI
Sbjct: 65 ELVDKYHEEFKDDWKWLNISFDRFIRTTDEEH-------KEIVQK----IFQKLKENGYI 113
Query: 147 YRDLKPVYWSPSSRTALAESELE 169
Y + P L + +E
Sbjct: 114 YEKEIKQLYCPECEMFLPDRYVE 136
Score = 61.2 bits (149), Expect = 2e-09
Identities = 87/409 (21%), Positives = 142/409 (34%), Gaps = 123/409 (30%)
Query: 636 LKASQQWFIDTERIKPEALACLEEV-NFVPESAKKTLRDQIAQRPYWCISRQRV-WGVPI 693
L A ++ + R PE+ + V N K L+D I+R V WG+P+
Sbjct: 188 LSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKD-------LAITRDLVYWGIPV 240
Query: 694 PVFYDGDTIIV-NEANIKHFCTLIDEHG--PDF--WWSLSVEQLLNTSDVNSNVTKSNDI 748
P + V +A I + +L G D+ WW+ N D DI
Sbjct: 241 P-NDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWN-------NDEDAELIHFIGKDI 292
Query: 749 LDIWFDSGISWSHVLKDKPAH-VYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFV 807
+ H +Y M G + VF HG++
Sbjct: 293 V-----------------RFHTIYWPAMLMGLGLPL--------------PTQVFSHGYL 321
Query: 808 VDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLR 867
E G KMSKS+GNV+ D+ +G D+LR
Sbjct: 322 TVE-GGKMSKSLGNVVDPSDLLAR-----------------------------FGADILR 351
Query: 868 WWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSEST-GSISRYVDVYM 926
+++ P+GK+ S +D V+++ + L LG N T G I +Y + +
Sbjct: 352 YYLLKE------RPLGKDGDFSWEDFVERVNADLANKLG---NLLNRTLGFIKKYFNGVL 402
Query: 927 -------------LKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFY-----FTL 968
LK + E +D F++ +A R ++ + + + + + L
Sbjct: 403 PSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMK-LADRGNKYIDENKPWEL 461
Query: 969 VKDRLYCDSINGEARLSGL-HTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
K RL L + VL + PIMP L+E++ L
Sbjct: 462 FKQ---------SPRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFL 501
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 61.4 bits (149), Expect = 3e-09
Identities = 48/151 (31%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 18 KPEFILHDGPPYANGTP-HIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 76
KP+F + D PY +G H+GH DI R +QG V + GWD GLP E A
Sbjct: 109 KPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYA 168
Query: 77 ITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQ 136
I + K L+ I +++ +S G DW+ T + EY K
Sbjct: 169 IETG----------THPKITTLKNIARFRSQLKSLGFSYDWDREI-STTEPEYYKWTQWI 217
Query: 137 FYNLYKQDYIYRDLKPVYWSPSSRTALAESE 167
F L K+ Y+ PV W P+ T LA E
Sbjct: 218 FLQLLKRGLAYQAEVPVNWCPALGTVLANEE 248
Score = 42.9 bits (101), Expect = 0.001
Identities = 43/175 (24%), Positives = 61/175 (34%), Gaps = 41/175 (23%)
Query: 527 IHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYS 586
I+P E + + A +V S GTG + PAH DF A +P+ ++
Sbjct: 394 INPATGE--AIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNE 451
Query: 587 PDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDT 646
DA G ++ + L + N S K VI +W
Sbjct: 452 DDAEKAYTGEGVIVNSSSSGLDI---------NGLSSK----EAAKKVI-----EW---- 489
Query: 647 ERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYDGDT 701
LEE + LRD W +RQR WG PIPV + D+
Sbjct: 490 ----------LEETGNGKKKVNYKLRD-------WLFARQRYWGEPIPVVFLEDS 527
Score = 34.8 bits (80), Expect = 0.36
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 1187 LEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPVFYDGDT 1231
LE + LRD W +RQR WG PIPV + D+
Sbjct: 490 LEETGNGKKKVNYKLRD-------WLFARQRYWGEPIPVVFLEDS 527
Score = 32.1 bits (73), Expect = 2.3
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 814 KMSKSVGNVISAHDIT--QGAKKLPAYEKSVG 843
KMSKS GNV++ D+ GA L YE +G
Sbjct: 723 KMSKSRGNVVNPDDVVSEYGADSLRLYEMFMG 754
Score = 32.1 bits (73), Expect = 2.6
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 270 IHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPV 318
I+P E + + A +V S GTG + PAH DF A +P+
Sbjct: 394 INPATGE--AIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPI 440
>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of archaeal,
bacterial, and eukaryotic cytoplasmic isoleucyl tRNA
synthetases. This domain is found in isoleucyl tRNA
synthetases (IleRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. This family includes
bacterial, archaeal, and eukaryotic cytoplasmic members.
IleRS catalyzes the transfer of isoleucine to the 3'-end
of its tRNA.
Length = 183
Score = 57.2 bits (139), Expect = 4e-09
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 923 DVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEA 982
D ++L RL + + A R LL F+ EL+ +Y + R + +
Sbjct: 49 DRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFID-ELTNWYIRRNRKRFW-GEEGDDD 106
Query: 983 RLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
+L+ TL+ + L R +AP P + EE+Y +L
Sbjct: 107 KLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNL 140
Score = 37.9 bits (89), Expect = 0.011
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 1058 LHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1087
TL+ + L R +AP P + EE+Y +L
Sbjct: 111 YATLYEVLLTLSRLMAPFTPFITEEIYQNL 140
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 57.0 bits (139), Expect = 6e-08
Identities = 52/191 (27%), Positives = 70/191 (36%), Gaps = 61/191 (31%)
Query: 527 IHPINKEQRDLKLLP---AGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQG 583
IHP+ E+ +P A +V GTG V PAH Q DF A +P+ +I
Sbjct: 309 IHPLTGEK-----IPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEP-- 361
Query: 584 KYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWF 643
D + GDG L+ +S D
Sbjct: 362 ---GDGDEDISEEAYTGDGV-----LI-----------NSGELD---------------G 387
Query: 644 IDTERIKPEALACLEEVNFVPESAKKT----LRDQIAQRPYWCISRQRVWGVPIPVFY-- 697
+D+E K +A LEE K+ LRD W ISRQR WG PIP+ +
Sbjct: 388 LDSEEAKEAIIAWLEEKGL----GKRKVNYRLRD-------WGISRQRYWGEPIPIIHCE 436
Query: 698 DGDTIIVNEAN 708
D + V E +
Sbjct: 437 DCGIVPVPEED 447
Score = 48.2 bits (116), Expect = 3e-05
Identities = 48/152 (31%), Positives = 61/152 (40%), Gaps = 41/152 (26%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRV-HYVP-GWDCHGLPIELKAITSKDKLLS 85
PY +G H+GH N + D+ R +QG V H P GWD GLP
Sbjct: 41 PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLH--PMGWDAFGLP-------------- 84
Query: 86 PLDIRKKAKNFALET-----------INTQKAEFESWGVLADWEHNCYHTFDKEYVK-NQ 133
A+N A++T I K + +S G DW T D EY K Q
Sbjct: 85 -------AENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYDWSREI-ATCDPEYYKWTQ 136
Query: 134 -LCQFYNLYKQDYIYRDLKPVYWSPSSRTALA 164
+ F LY++ YR PV W P T LA
Sbjct: 137 WI--FLKLYEKGLAYRKESPVNWCPVDGTVLA 166
Score = 46.6 bits (112), Expect = 1e-04
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 1201 LRDQIAQRPYWCISRQRVWGVPIPVFY--DGDTIIVNEAN 1238
LRD W ISRQR WG PIP+ + D + V E +
Sbjct: 415 LRD-------WGISRQRYWGEPIPIIHCEDCGIVPVPEED 447
Score = 43.5 bits (104), Expect = 8e-04
Identities = 50/230 (21%), Positives = 75/230 (32%), Gaps = 77/230 (33%)
Query: 797 PFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAK 856
PF+ + G V KMSKS GNV+ DI EK
Sbjct: 559 PFKKLLTQGMV------KMSKSKGNVVDPDDI---------IEK---------------- 587
Query: 857 KLPAYGVDVLRWWV--AAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSES 914
YG D R + A KD L S V+ L+ + ++ +
Sbjct: 588 ----YGADTARLFEMFAGPPEKD---------LEWSDSGVEGAYRFLQRVWRLVVDAKGE 634
Query: 915 TGSI---SRYVDVYMLKRLCEF--QNTMDTLYGEFQYARA---SRVLLNFVVNELSAFYF 966
G++ + D + ++L + + T D ++ A L VN L
Sbjct: 635 AGALDVAALSEDKELRRKLHKTIKKVTED--IERLRFNTAIAALMEL----VNALYK--- 685
Query: 967 TLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
D + L L+R +AP PHLAEE++ L
Sbjct: 686 -------AEDEQDKAVLREALEI-------LVRLLAPFAPHLAEELWEKL 721
Score = 35.1 bits (82), Expect = 0.32
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 270 IHPINKEQRDLKLLP---AGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLI 322
IHP+ E+ +P A +V GTG V PAH Q DF A +P+ +I
Sbjct: 309 IHPLTGEK-----IPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVI 359
Score = 34.7 bits (81), Expect = 0.42
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 1060 TLHNIFHVLLRTVAPIMPHLAEEVYSHL 1087
L +L+R +AP PHLAEE++ L
Sbjct: 694 VLREALEILVRLLAPFAPHLAEELWEKL 721
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 49.9 bits (120), Expect = 7e-06
Identities = 55/268 (20%), Positives = 91/268 (33%), Gaps = 80/268 (29%)
Query: 798 FRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKK 857
+ VF HGF+ + G KMSKS+GNVI D+
Sbjct: 284 PKRVFAHGFLTLD-GEKMSKSLGNVIDPFDLVD--------------------------- 315
Query: 858 LPAYGVDVLRWWVAAHASKDPTVPIGK--NILNSSQDD-VQKIRSSLRYLLGVLHNHSES 914
YGVD +R+++ +P G+ + S++ + +I + L LG L + S
Sbjct: 316 --EYGVDAVRYFLLR------EIPFGQDGDF---SREAFINRINADLANDLGNLAQRTLS 364
Query: 915 TGSISRYV-------------DVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNEL 961
I++ D +L+ + + +A +L +V
Sbjct: 365 M--IAKNFDGKVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILA-LVRAA 421
Query: 962 SAFYF------TLVKDRLYCDSINGEARLS-GLHTLHN---IFHVLLRTVAPIMPHLAEE 1011
+ Y +L K RL+ L+TL VLL P+MP LA +
Sbjct: 422 NK-YIDEQAPWSLAKTD--------PERLATVLYTLLEVLRGIAVLL---QPVMPELAAK 469
Query: 1012 VYSHLPSRQGTFSSFCHFKVYLQYSGSI 1039
+ L + F G+
Sbjct: 470 ILDQLGVEEDENRDFAALSWGRLAPGTT 497
Score = 45.6 bits (109), Expect = 1e-04
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 27 PPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSP 86
Y NG PHIGHA + D+ R L+G V ++ G D HG I+ KA ++ +SP
Sbjct: 9 IYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKA---EEAGISP 65
Query: 87 LDI-RKKAKNF 96
++ + + F
Sbjct: 66 QELADRNSAAF 76
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 49.8 bits (120), Expect = 8e-06
Identities = 22/48 (45%), Positives = 25/48 (52%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 76
Y NG PHIGHA I D R LQG V ++ G D HG I+ A
Sbjct: 14 YPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAA 61
Score = 35.9 bits (84), Expect = 0.15
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 797 PFRNVFLHGFVVDEKGAKMSKSVGNVI 823
+ VF HG+ + K KMSKS GNV+
Sbjct: 283 LPKKVFAHGWWL-MKDGKMSKSKGNVV 308
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 43.8 bits (104), Expect = 6e-04
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 789 SVALKHTAPFRNVFLH-GFV-VDEKGAKMSKSVGNVISAHDITQ 830
S A PF ++H GF+ +D G KMSKS+GN I+ D+ +
Sbjct: 243 SEAATGVKPFAKYWMHNGFLNID--GEKMSKSLGNFITVRDLLK 284
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 41.2 bits (98), Expect = 0.003
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 793 KHTAPFRNVFLH-GFV-VDEKGAKMSKSVGNVISAHDI 828
PF N ++H GFV V+ G KMSKS+GN + D+
Sbjct: 245 ATGKPFANYWMHNGFVTVN--GEKMSKSLGNFFTIRDL 280
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
aminoacyl tRNA synthetases and similar domains. This
domain is found in a variety of class Ia aminoacyl tRNA
synthetases, C-terminal to the catalytic core domain. It
recognizes and specifically binds to the anticodon of the
tRNA. Aminoacyl tRNA synthetases catalyze the transfer of
cognate amino acids to the 3'-end of their tRNAs by
specifically recognizing cognate from non-cognate amino
acids. Members include valyl-, leucyl-, isoleucyl-,
cysteinyl-, arginyl-, and methionyl-tRNA synthethases.
This superfamily also includes a domain from MshC, an
enzyme in the mycothiol biosynthetic pathway.
Length = 117
Score = 37.5 bits (87), Expect = 0.008
Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 7/122 (5%)
Query: 885 NILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRY-VDVYMLKRLCEFQNTMDTLYGE 943
L ++ + ++ L + L + D +L RL EF
Sbjct: 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEA 61
Query: 944 FQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAP 1003
A + L F NEL+ +Y +K L E R + L L VL + +AP
Sbjct: 62 LDPTTAVQELFKF-TNELN-WYLDELKPALQ----TEELREAVLAVLRAALVVLTKLLAP 115
Query: 1004 IM 1005
Sbjct: 116 FT 117
>gnl|CDD|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of bacterial
and eukaryotic mitochondrial leucyl tRNA synthetases.
This domain is found in leucyl tRNA synthetases (LeuRS),
which belong to the class Ia aminoacyl tRNA synthetases.
It lies C-terminal to the catalytic core domain. In
contrast to other class Ia enzymes, the anticodon is not
used as an identity element in LeuRS (with exceptions
such as Saccharomyces cerevisiae and some other
eukaryotes). No anticodon-binding site can be defined for
this family, which includes bacterial and eukaryotic
mitochondrial members, as well as LeuRS from the archaeal
Halobacteria. LeuRS catalyzes the transfer of leucine to
the 3'-end of its tRNA.
Length = 117
Score = 36.8 bits (86), Expect = 0.013
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 986 GLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
L L+ +AP PH+AEE++ L
Sbjct: 87 HAAVLREALETLVLLLAPFAPHIAEELWEEL 117
Score = 36.8 bits (86), Expect = 0.013
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 1057 GLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1087
L L+ +AP PH+AEE++ L
Sbjct: 87 HAAVLREALETLVLLLAPFAPHIAEELWEEL 117
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2. This
is a family of the conserved region of Leucine-tRNA
ligase or Leucyl-tRNA synthetase, EC:6.1.1.4.
Length = 178
Score = 36.7 bits (86), Expect = 0.033
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 270 IHPINKEQRDLKLLP---AGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQG 326
IHPI E+ +P A FV GTG V PAH Q DF A +P+ +I +
Sbjct: 83 IHPITGEK-----IPIWIANFVLMDYGTGAVMAVPAHDQRDFEFAKKYNLPIKQVIKPED 137
Query: 327 KYSPDAGPGLEGLNILGDGK 346
D + G
Sbjct: 138 G---DEDDLIMEEAYTEKGI 154
Score = 36.7 bits (86), Expect = 0.033
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 527 IHPINKEQRDLKLLP---AGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQG 583
IHPI E+ +P A FV GTG V PAH Q DF A +P+ +I +
Sbjct: 83 IHPITGEK-----IPIWIANFVLMDYGTGAVMAVPAHDQRDFEFAKKYNLPIKQVIKPED 137
Query: 584 KYSPDAGPGLEGLNILGDGK 603
D + G
Sbjct: 138 G---DEDDLIMEEAYTEKGI 154
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 37.8 bits (87), Expect = 0.038
Identities = 23/68 (33%), Positives = 30/68 (44%)
Query: 9 SWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCH 68
S Q ++ F+L Y N PH+G A I D R L GK+V ++ G D H
Sbjct: 59 SSQESTVDEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEH 118
Query: 69 GLPIELKA 76
G I A
Sbjct: 119 GEKIATSA 126
Score = 32.4 bits (73), Expect = 1.9
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 20/96 (20%)
Query: 751 IWFDSGISWSHVLKDK--------------PAHVYMEGMD--QINGWFMSSLLTSVALKH 794
+WFD+ + + L + PA +++ G D + + + ++L S L+
Sbjct: 291 VWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLEL 350
Query: 795 TAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQ 830
+ VF HGF+ + G KM KS+GN + ++ Q
Sbjct: 351 P---KMVFGHGFLTKD-GMKMGKSLGNTLEPFELVQ 382
>gnl|CDD|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.
Length = 510
Score = 37.1 bits (87), Expect = 0.066
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 806 FVVDEKGAKMSKSVGNVISAHD 827
+D+KG K+SKS GNVI+ D
Sbjct: 272 LFLDKKGEKISKSKGNVITIED 293
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 36.0 bits (84), Expect = 0.070
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 797 PFRNVFLH-GFV-VDEKGAKMSKSVGNVISAHDITQG 831
PF +LH G + +D G KMSKS+GN I+ D +
Sbjct: 157 PFARYWLHTGHLTID--GEKMSKSLGNFITVRDALKK 191
>gnl|CDD|216786 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K). This family
includes only lysyl tRNA synthetases from prokaryotes.
Length = 357
Score = 36.4 bits (85), Expect = 0.081
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 806 FVVDEKGAKMSKSVGNVISAHDI 828
++ + G KMS S GNVI+ D
Sbjct: 271 LILLKGGGKMSSSKGNVITIEDW 293
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 35.8 bits (83), Expect = 0.12
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 794 HTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQ 830
+LH + +G KMSKS+GN ++ D+ +
Sbjct: 233 FDQQLAKYWLHNGHLMIEGEKMSKSLGNFLTIRDVLK 269
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 35.4 bits (82), Expect = 0.18
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 794 HTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDI 828
++H + KMSKS+GN + D+
Sbjct: 245 FGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDV 279
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 33.6 bits (77), Expect = 0.26
Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 10/113 (8%)
Query: 710 KHFC-TLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDKPA 768
K C LID+ G + + + V + + + ++ F + + +
Sbjct: 36 KVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVEYMFLQAADFLLLY-ETEC 94
Query: 769 HVYMEGMDQ---INGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKS 818
+++ G DQ I LL PF F G V+ G KMSKS
Sbjct: 95 DIHLGGSDQLGHIELGL--ELLKKAGGP-ARPFGLTF--GRVMGADGTKMSKS 142
Score = 30.5 bits (69), Expect = 2.5
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 27 PPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 76
NG HIGH + D ++ G +V + D G I A
Sbjct: 5 GITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPA 54
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 34.7 bits (80), Expect = 0.41
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNL--LQGKRVHYVPGWDCHGLPIELKAITSKDKL 83
PY NG H+GHA + L + + L+G V + C G+PI KA S DKL
Sbjct: 54 PYMNGLLHLGHAFS--LSKLEFAAAYHRLRGANVLLPFAFHCTGMPI--KA--SADKL 105
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 32.8 bits (75), Expect = 1.4
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 28 PYANGTPHIGHAVNKILK-DITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSP 86
PY N PH+G+ + +L D+ R L+G Y+ G D +G E KA+ +P
Sbjct: 26 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEEN---CTP 82
Query: 87 LDIRKK 92
+I K
Sbjct: 83 KEICDK 88
Score = 30.5 bits (69), Expect = 7.8
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 10/34 (29%)
Query: 671 LRDQIAQRPYWCISRQRVWGVPIP-------VFY 697
LRD + R CI+R WGVP+P VFY
Sbjct: 241 LRDGLKPR---CITRDLKWGVPVPLEKYKDKVFY 271
Score = 30.5 bits (69), Expect = 7.8
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 10/34 (29%)
Query: 1201 LRDQIAQRPYWCISRQRVWGVPIP-------VFY 1227
LRD + R CI+R WGVP+P VFY
Sbjct: 241 LRDGLKPR---CITRDLKWGVPVPLEKYKDKVFY 271
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl tRNA
synthetases. This domain is found in methionyl tRNA
synthetases (MetRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon (CAU). MetRS catalyzes the
transfer of methionine to the 3'-end of its tRNA.
Length = 129
Score = 30.5 bits (70), Expect = 2.4
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 22/105 (20%)
Query: 922 VDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFV--VNELSAFYFT------LVK--D 971
D +L+ E + E ++ +A ++ N+ Y L K D
Sbjct: 37 EDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANK----YIDETAPWKLAKEED 92
Query: 972 RLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
++ L+ L + +L ++P MP AE++ L
Sbjct: 93 PERLATV--------LYVLLELLRILAILLSPFMPETAEKILDQL 129
>gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I
lysyl tRNA synthetase. Class I lysyl tRNA synthetase
(LysRS) catalytic core domain. This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. The class I LysRS is found only in archaea and
some bacteria and has evolved separately from class II
LysRS, as the two do not share structural or sequence
similarity.
Length = 353
Score = 31.9 bits (73), Expect = 2.4
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 794 HTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHD 827
P ++ F+ + G KMS S GNVI+ D
Sbjct: 257 GEPPVP--VMYEFIGLKGGGKMSSSKGNVITPSD 288
>gnl|CDD|216097 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only arginyl tRNA
synthetase.
Length = 345
Score = 31.7 bits (72), Expect = 2.5
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 770 VYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVD--EKGAKMSKSVGNVISAHD 827
+Y+ G DQ +G + AL + V GF V + G +MS GNV++ D
Sbjct: 234 IYVLGADQ-HGHIQRLFAAAAALGYDPESVEVLHIGFGVVLGKDGKRMSTRAGNVVTLDD 292
Query: 828 ITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRW 868
+ A + A + N D + A GVD R+
Sbjct: 293 LLDEALE-RAMDIKEKNRDLTADELEAVAT--AIGVDAARY 330
>gnl|CDD|224302 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation,
ribosomal structure and biogenesis].
Length = 521
Score = 31.5 bits (72), Expect = 2.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 806 FVVDEKGAKMSKSVGNVISAHDI 828
+++ + G KMS S GNVIS D
Sbjct: 269 WILLKGGGKMSSSKGNVISLSDW 291
>gnl|CDD|233393 TIGR01392, homoserO_Ac_trn, homoserine O-acetyltransferase. This
family describes homoserine-O-acetyltransferase, an
enzyme of methionine biosynthesis. This model has been
rebuilt to identify sequences more broadly, including a
number of sequences suggested to be homoserine
O-acetyltransferase based on proximity to other Met
biosynthesis genes [Amino acid biosynthesis, Aspartate
family].
Length = 351
Score = 31.5 bits (72), Expect = 2.9
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 3 GFSELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKR 58
F+E+ QR+A+ P + +DG Y +G P G A+ ++L +T RS +R
Sbjct: 170 AFNEV---QRQAILADPNW--NDGDYYEDGQPDRGLALARMLAHLTYRSEESMAER 220
>gnl|CDD|225302 COG2469, COG2469, Uncharacterized conserved protein [Function
unknown].
Length = 284
Score = 31.3 bits (71), Expect = 3.0
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 861 YGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISR 920
V +V K + + + L S ++D +++ + +L V H E+T ++
Sbjct: 128 LSVTPDELFVFLSNDKQVRILL--SDLGSVENDKREVNGKTKIVLKV--RHVENTKVVTS 183
Query: 921 YVDVYMLKRLCEFQNTMDTLYGEFQY 946
V C NT+ LY Q
Sbjct: 184 LV-------FCPDSNTLSMLYSYLQN 202
>gnl|CDD|165200 PHA02866, PHA02866, Hypothetical protein; Provisional.
Length = 333
Score = 31.5 bits (71), Expect = 3.2
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Query: 96 FALETINTQKAEFESWGVLADWEHNC-----YHTFDKEYVKNQ----LCQ------FYNL 140
+AL +N+ AE ES+GV+ D C Y K+ + + +C FYNL
Sbjct: 200 YALVEVNSPFAEVESFGVITDRSGRCLLVNRYQKLVKKVMVEKTFVDMCTEISFDGFYNL 259
Query: 141 YK---QDYIYRDLKPV---YWSPSSRTALAESELEYKPDHVSKSIYLKI 183
+D +++LK V W PSS L D+VS ++ K+
Sbjct: 260 SNVEGKDMAWKELKAVKEDLWVPSSEEDY--KFLRELVDYVSSNLKTKV 306
>gnl|CDD|233094 TIGR00693, thiE, thiamine-phosphate pyrophosphorylase. This model
represents the thiamine-phosphate pyrophosphorylase,
ThiE, of a number of bacteria, and N-terminal domains of
bifunctional thiamine proteins of Saccharomyces
cerevisiae and Schizosaccharomyces pombe, in which the
C-terminal domain corresponds to the bacterial
hydroxyethylthiazole kinase (EC 2.7.1.50), ThiM. This
model includes ThiE from Bacillus subtilis but excludes
its paralog, the regulatory protein TenI , and neighbors
of TenI [Biosynthesis of cofactors, prosthetic groups,
and carriers, Thiamine].
Length = 196
Score = 30.7 bits (70), Expect = 3.6
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 857 KLPAYGVDVLRWWVAAHASKDPTVPIG 883
P GV++LR A P V IG
Sbjct: 134 PAPPAGVELLREIAATSIDI-PIVAIG 159
>gnl|CDD|233731 TIGR02108, PQQ_syn_pqqB, coenzyme PQQ biosynthesis protein B. This
model describes coenzyme PQQ biosynthesis protein B, a
gene required for the biosynthesis of
pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is
required for some glucose dehydrogenases and alcohol
dehydrogenases. Note that this gene appears to be
required for PQQ in biosynthesis in Methylobacterium
extorquens (under the name pqqG) and in Klebiella
pneumoniae but that the equivalent pqqV in Acinetobacter
calcoaceticus is not necessary for heterologous
expression of PQQ biosynthesis in E. coli. Based on this
latter finding, it is suggested (Goosen, et al. 1989)
that PqqB might be a transporter or a PQQ-dependent
enzyme rather than a PQQ biosynthesis enzyme
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 302
Score = 30.9 bits (70), Expect = 4.4
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 23/68 (33%)
Query: 14 ALNGKPEFILHDG--------------PPYA---NGTPHIGHAVNKILKDITLRSNLLQG 56
ALN K EF + P Y+ G PH G + ++D G
Sbjct: 137 ALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIED------GTTG 190
Query: 57 KRVHYVPG 64
KR+ Y+PG
Sbjct: 191 KRLFYIPG 198
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal
and eukaryotic cytoplasmic leucyl tRNA synthetases. This
domain is found in leucyl tRNA synthetases (LeuRS), which
belong to the class Ia aminoacyl tRNA synthetases. It
lies C-terminal to the catalytic core domain. In contrast
to other class Ia enzymes, the anticodon is not used as
an identity element in LeuRS (with exceptions such as
Saccharomyces cerevisiae and some other eukaryotes). No
anticodon-binding site can be defined for this family,
which includes archaeal and eukaryotic cytoplasmic
members. LeuRS catalyzes the transfer of leucine to the
3'-end of its tRNA.
Length = 117
Score = 29.5 bits (67), Expect = 4.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 990 LHNIFHVLLRTVAPIMPHLAEEVYS 1014
L V R +AP PHLAEE++
Sbjct: 91 LRRFIEVWTRLLAPFAPHLAEEIWH 115
Score = 29.5 bits (67), Expect = 4.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 1061 LHNIFHVLLRTVAPIMPHLAEEVYS 1085
L V R +AP PHLAEE++
Sbjct: 91 LRRFIEVWTRLLAPFAPHLAEEIWH 115
>gnl|CDD|132613 TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, archaeal. Members
of this protein are L-seryl-tRNA(Sec) kinase. This enzyme
is part of a two-step pathway in Eukaryota and Archaea
for performing selenocysteine biosynthesis by changing
serine misacylated on selenocysteine-tRNA to
selenocysteine. This enzyme performs the first step,
phosphorylation of the OH group of the serine side chain.
This family represents archaeal proteins with this
activity [Protein synthesis, tRNA aminoacylation].
Length = 249
Score = 30.5 bits (69), Expect = 4.8
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 11/60 (18%)
Query: 1212 CISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLPVEQLLNTSDVNSN 1271
+ R G IP NE IK DE G + W LP + T ++ N
Sbjct: 109 LLRRNIERGEKIP----------NEV-IKDMYEKFDEPGTKYSWDLPDLTIDTTKKIDYN 157
Score = 29.8 bits (67), Expect = 9.0
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 12/70 (17%)
Query: 682 CISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSN 741
+ R G IP NE IK DE G + W L + T ++ N
Sbjct: 109 LLRRNIERGEKIP----------NEV-IKDMYEKFDEPGTKYSWDLPDLTIDTTKKIDYN 157
Query: 742 VTKSNDILDI 751
+IL+I
Sbjct: 158 EI-LEEILEI 166
>gnl|CDD|227822 COG5535, RAD4, DNA repair protein RAD4 [DNA replication,
recombination, and repair].
Length = 650
Score = 30.6 bits (69), Expect = 7.2
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 371 WRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGITHDRPGTALAESE--LEYK 428
R + V LK+++QW+ IKP A K V + RV D+ L E Y
Sbjct: 466 LR-RDVVRLKSAEQWYRMGRVIKPGAQPLKIVKRMRERVRNLDDKVIRELYSPEQTELYG 524
Query: 429 PDHISKSIYLK 439
P + I K
Sbjct: 525 PPLVVAGIIPK 535
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 30.1 bits (69), Expect = 7.8
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 860 AYG-----VDVLRWWVAAHASKDPTVPIGKNILN 888
AYG VDV V +VPIG+ I N
Sbjct: 240 AYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIAN 273
>gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional.
Length = 394
Score = 30.1 bits (68), Expect = 7.8
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 1114 KYSPDAGPGLEGLNILGEGKDQVLHL----VEP-DVLWTENYQHSYPYDWR-------TK 1161
+Y + P E L +LG K+ + HL V P DV+ + +YP +R
Sbjct: 89 RYGVELDPDSEALPLLGS-KEGLTHLALAYVNPGDVVLVPS--PAYPAHFRGPLIAGAQI 145
Query: 1162 KPVILKASQQWFIDTERIKPEALA 1185
P+ILK W ID I PE +A
Sbjct: 146 YPIILKPENDWLIDLSSI-PEEVA 168
Score = 30.1 bits (68), Expect = 8.1
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 584 KYSPDAGPGLEGLNILGDGKDQVLHL----VEP-DVLWTENYQHSYPYDWR-------TK 631
+Y + P E L +LG K+ + HL V P DV+ + +YP +R
Sbjct: 89 RYGVELDPDSEALPLLGS-KEGLTHLALAYVNPGDVVLVPS--PAYPAHFRGPLIAGAQI 145
Query: 632 KPVILKASQQWFIDTERIKPEALA 655
P+ILK W ID I PE +A
Sbjct: 146 YPIILKPENDWLIDLSSI-PEEVA 168
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 30.1 bits (69), Expect = 7.9
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 791 ALKHTAPFRNVFLH---GFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVIS 847
AL + V LH G V +G KMS GNV++ D+ +++VG
Sbjct: 296 ALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDL---------LDEAVGR--- 343
Query: 848 AHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPI 882
A ++ + + A G+D +R+ S+ +
Sbjct: 344 ARELIEEKEIAEAVGIDAVRY---FDLSRSRDKDL 375
>gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.
Length = 384
Score = 30.3 bits (69), Expect = 8.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 791 ALKHTAPFRNVFLHGFVVDEKGAKMSKSVGN 821
A F ++H ++ G KMSKS GN
Sbjct: 238 AATGERRFARHYVHAGMIGLDGEKMSKSRGN 268
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are
encoded near genes for homologs of PfaB, PfaC, and/or
PfaD.
Length = 2582
Score = 30.4 bits (68), Expect = 8.5
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 169 EYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLP-----ANQFIAFNP-A 222
EY P H Y + V LL A + AL+ + W +Q AFN A
Sbjct: 461 EYSPKHQRDDQY---RQRAVAQTLLFTAANEKALVSSLKDWKNKLSAKADDQPYAFNALA 517
Query: 223 LEYSVASV 230
+E ++ ++
Sbjct: 518 VENTLRTI 525
>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase
1-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Yeast protein kinase 1
(YPK1)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The YPK1-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
fungal proteins with similarity to the AGC STKs,
Saccharomyces cerevisiae YPK1 and Schizosaccharomyces
pombe Gad8p. YPK1 is required for cell growth and acts
as a downstream kinase in the sphingolipid-mediated
signaling pathway of yeast. It also plays a role in
efficient endocytosis and in the maintenance of cell
wall integrity. Gad8p is a downstream target of Tor1p,
the fission yeast homolog of mTOR. It plays a role in
cell growth and sexual development.
Length = 312
Score = 29.9 bits (67), Expect = 9.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 129 YVKNQLCQFYNLYKQDYIYRDLKP 152
Y LC NL+K + IYRDLKP
Sbjct: 98 YTAELLCALENLHKFNVIYRDLKP 121
>gnl|CDD|224150 COG1229, FwdA, Formylmethanofuran dehydrogenase subunit A [Energy
production and conversion].
Length = 575
Score = 30.1 bits (68), Expect = 9.9
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 183 IKLNQVPAHLLEGATDLHALIWTTTPWSL-PANQFIAFNPALEYSVASVKGANVIVAKCL 241
+ L++ HL GA D I+ P + P+N + A + ++KG ++V
Sbjct: 455 LGLSERKGHLGVGA-DADIAIYDLNPEQVDPSNDYEKVEKAFRKAAYTLKGGEIVVKDGE 513
Query: 242 VESLKW--TFQTDIEVVCDFPGQYLQDI 267
+ + T+ D++V + L+D+
Sbjct: 514 IVAEPEGRTYWVDVKVPESLMEEMLKDV 541
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.428
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 66,058,804
Number of extensions: 6564681
Number of successful extensions: 5478
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5212
Number of HSP's successfully gapped: 233
Length of query: 1281
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1173
Effective length of database: 6,147,370
Effective search space: 7210865010
Effective search space used: 7210865010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (28.6 bits)