RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17125
(1281 letters)
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET:
MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 641 bits (1655), Expect = 0.0
Identities = 212/623 (34%), Positives = 318/623 (51%), Gaps = 62/623 (9%)
Query: 417 GTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAF 476
++LAE+E+EY D S SIY+ + + A +IWTTTPW++P+N I
Sbjct: 190 ESSLAEAEIEYH-DKRSASIYVAFNVKDDKGVVDADA---KFIIWTTTPWTIPSNVAITV 245
Query: 477 NPALEYSVASVKGANVIVAKCLVENLKWTFQ---TDIDVVCDFPGQYLQDITYIHPINKE 533
+P L+Y +V G I+A+ L + + I + ++ G+ L+ + HP
Sbjct: 246 HPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFL-- 303
Query: 534 QRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGL 593
R+ ++ V++ GTG VH AP HG+DD+++ ++PV++ I ++G ++ +
Sbjct: 304 DRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEG-GQF 362
Query: 594 EGLNILGDGKDQVL-HLVEPDVLW-TENYQHSYPYDWRTKKPVILKASQQWFIDTERIKP 651
EG+ V L E L + HSYP+DWRTKKPVI +A+ QWF +++
Sbjct: 363 EGMFYD-KANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQ 421
Query: 652 EALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYDGDT-IIVNEANIK 710
+ L +E NF K + + + R W ISRQRVWGVP+PVFY + II+ + +
Sbjct: 422 DILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVN 481
Query: 711 HFCTLIDEHGPDFWWSLSVEQLL-----NTSDVNSNVTKSNDILDIWFDSGISWSHVLKD 765
H L EHG + W+ + LL + N TK DI+D+WFDSG S VL+
Sbjct: 482 HVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLET 541
Query: 766 K-----PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVG 820
+ PA +Y+EG DQ GWF SS+ TSVA + +P++ + HGFV+D +G KMSKS+G
Sbjct: 542 RPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLG 601
Query: 821 NVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPT- 879
NVI + + G D+ R WV +S D
Sbjct: 602 NVIVPDQVVK-----------------------------QKGADIARLWV---SSTDYLA 629
Query: 880 -VPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSIS----RYVDVYMLKRLCEFQ 934
V I IL + DD +KIR++LR++LG +++ + T SI VD Y+L RL EF
Sbjct: 630 DVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFT 689
Query: 935 NTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIF 994
+ Y F Y + + NF+ ELS FY KD LY + + R S L+ I
Sbjct: 690 ASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQIL 749
Query: 995 HVLLRTVAPIMPHLAEEVYSHLP 1017
+ + +API+ H AEEV+SH P
Sbjct: 750 VDMTKLLAPILVHTAEEVWSHTP 772
Score = 497 bits (1283), Expect = e-158
Identities = 151/400 (37%), Positives = 221/400 (55%), Gaps = 18/400 (4%)
Query: 6 ELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGW 65
+ Y E G FILHDGPPYANG H+GHA+NKILKD +R +QG YVPGW
Sbjct: 35 DQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGW 94
Query: 66 DCHGLPIELKAITSKD---KLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCY 122
D HGLPIE +T K K +S + R+K K FALE I QK +F GV D+ + Y
Sbjct: 95 DTHGLPIEQA-LTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFN-DPY 152
Query: 123 HTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIYLK 182
T EY Q+ F + + IY+ KPVYWSPSS ++LAE+E+EY D S SIY+
Sbjct: 153 ITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYH-DKRSASIYVA 211
Query: 183 IKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLV 242
+ + A +IWTTTPW++P+N I +P L+Y +V G I+A+ L
Sbjct: 212 FNVKDDKGVVDADA---KFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALS 268
Query: 243 ESLKWTF---QTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHC 299
+++ + I++ ++ G+ L+ + HP R+ ++ V++ GTG VH
Sbjct: 269 DAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFL--DRESLVINGDHVTTDAGTGCVHT 326
Query: 300 APAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVL-HLVEPDVL 358
AP HG+DD+++ ++PV++ I ++G ++ + EG+ V L E L
Sbjct: 327 APGHGEDDYIVGQQYELPVISPIDDKGVFTEEG-GQFEGMFYD-KANKAVTDLLTEKGAL 384
Query: 359 W-TENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 397
+ HSYP+DWRTKKPVI +A+ QWF +++ + L
Sbjct: 385 LKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDIL 424
Score = 186 bits (475), Expect = 2e-48
Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 5/161 (3%)
Query: 1106 LNLITNQGKYSPDAGPGLEGLNILGEGKDQVL-HLVEPDVLW-TENYQHSYPYDWRTKKP 1163
++ I ++G ++ + EG+ + V L E L + HSYP+DWRTKKP
Sbjct: 346 ISPIDDKGVFTEEG-GQFEGMFYD-KANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKP 403
Query: 1164 VILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPI 1223
VI +A+ QWF +++ + L +E NF K + + + R W ISRQRVWGVP+
Sbjct: 404 VIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPL 463
Query: 1224 PVFYDGDT-IIVNEANIKHFCTLIDEHGPDFWWSLPVEQLL 1263
PVFY + II+ + + H L EHG + W+ + LL
Sbjct: 464 PVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLL 504
Score = 65.6 bits (161), Expect = 9e-11
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 1024 SSFCHFKVYLQYSGSIAKRILYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEV 1083
S+F YL K ILY + + R S L+ I + + +API+ H AEEV
Sbjct: 717 SNF-----YL----DYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEV 767
Query: 1084 YSHLP 1088
+SH P
Sbjct: 768 WSHTP 772
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 447 bits (1153), Expect = e-140
Identities = 160/633 (25%), Positives = 265/633 (41%), Gaps = 77/633 (12%)
Query: 417 GTALAESELE--YKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFI 474
GT L+ E+ YK + S+Y++ L + LE A LIWTTTPW+LP N
Sbjct: 185 GTPLSSHEVALGYK-EIQDPSVYVRFPLKEPKKLGLEKA---SLLIWTTTPWTLPGNVAA 240
Query: 475 AFNPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKE- 533
A +P Y+ V +I+ + L L V+ FPG+ L+ + Y P +
Sbjct: 241 AVHPEYTYAAFQVGDEALILEEGLGRKL---LGEGTQVLKTFPGKALEGLPYTPPYPQAL 297
Query: 534 QRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGL 593
++ ++ A +VS GTG+VH APA G +D A +P+L + +GK +
Sbjct: 298 EKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEP---F 354
Query: 594 EGLNILGDGKDQVLHLVEPDVLW-TENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPE 652
+GL + + L +L+ E+Y HSYP+ WR P++ A++ WFI K E
Sbjct: 355 KGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDE 414
Query: 653 ALACLEEVNFVPESAKKT-LRDQIAQRPYWCISRQRVWGVPIPVFY--DGDTIIVNEANI 709
+ +E+++VP K+ + + W +SR R WG P+P++ I
Sbjct: 415 LIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEA----I 470
Query: 710 KHFCTLIDEHGPDFWWSL-----SVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVL- 763
F L V+Q+ + + ++D+W+DSG L
Sbjct: 471 GSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLH 530
Query: 764 -----KDK-----PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGA 813
++ PA EG+DQ GWF S V L + F+NV HG ++DEKG
Sbjct: 531 YPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQ 590
Query: 814 KMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAH 873
KMSKS GNV+ DI + +G D LRW++
Sbjct: 591 KMSKSKGNVVDPWDIIR-----------------------------KFGADALRWYIYV- 620
Query: 874 ASKDPTVP--IGKNILNSSQDDV-QKIRSSLRYLLGVLHNHSESTGSISRY-----VDVY 925
S P G N++ + D + + + + + + +D +
Sbjct: 621 -SAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRW 679
Query: 926 MLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLS 985
+L R+ + + + ++R L +FVV +LS +Y + R + + + R +
Sbjct: 680 LLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNE-DALDREA 738
Query: 986 GLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPS 1018
TL+ ++ AP P LAE ++ +L
Sbjct: 739 AYATLYEALVLVATLAAPFTPFLAEVLWQNLVR 771
Score = 388 bits (999), Expect = e-118
Identities = 117/402 (29%), Positives = 188/402 (46%), Gaps = 22/402 (5%)
Query: 7 LYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 66
++ E G P + +++GPP ANG PH+GHA + KD+ R ++G GWD
Sbjct: 26 IFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85
Query: 67 CHGLPIELKA-----ITSKDKL--LSPLDIRKKAKNFALETINTQKAEFESWGVLADWEH 119
HGLP+EL+ + SK ++ + + +A E D E
Sbjct: 86 THGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLE- 144
Query: 120 NCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELE--YKPDHVSK 177
+ Y T + Y+++ NL+ + +YRD K V + P T L+ E+ YK +
Sbjct: 145 DAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYK-EIQDP 203
Query: 178 SIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIV 237
S+Y++ L + LE A LIWTTTPW+LP N A +P Y+ V +I+
Sbjct: 204 SVYVRFPLKEPKKLGLEKA---SLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALIL 260
Query: 238 AKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKE-QRDLKLLPAGFVSSSKGTGL 296
+ L L +V+ FPG+ L+ + Y P + ++ ++ A +VS GTG+
Sbjct: 261 EEGLGRKL---LGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGI 317
Query: 297 VHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPD 356
VH APA G +D A +P+L + +GK + +GL + + L
Sbjct: 318 VHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEP---FKGLYFREANRAILRDLRGRG 374
Query: 357 VLW-TENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 397
+L+ E+Y HSYP+ WR P++ A++ WFI K E +
Sbjct: 375 LLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELI 416
Score = 121 bits (305), Expect = 6e-28
Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 11/156 (7%)
Query: 1106 LNLITNQGKYSPDAGPGLEGLNILGEGKDQVLHLVEPDVLW-TENYQHSYPYDWRTKKPV 1164
L + +GK + +GL + + L +L+ E+Y HSYP+ WR P+
Sbjct: 340 LKTVDEEGKLLVEP---FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPL 396
Query: 1165 ILKASQQWFIDTERIKPEALACLEGVNFVPESAK-KSLRDQIAQRPYWCISRQRVWGVPI 1223
+ A++ WFI K E + + +++VP K + + W +SR R WG P+
Sbjct: 397 MYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPL 456
Query: 1224 PVFY--DGDTIIVNEANIKHFCTLIDEHGPDFWWSL 1257
P++ I F L
Sbjct: 457 PIWVCQACGKEEA----IGSFQELKARATKPLPEPF 488
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics
initiativ structural genomics, ligase-RNA complex; 3.21A
{Pyrococcus horikoshii}
Length = 967
Score = 289 bits (741), Expect = 4e-82
Identities = 124/681 (18%), Positives = 219/681 (32%), Gaps = 140/681 (20%)
Query: 417 GTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAF 476
GT L + +L + + Y+ IK L E ++ T P ++ +
Sbjct: 190 GTPLGDHDLMEG-EDVPILDYIIIKF-----ELRENGEVIYLPAATLRPETVYGVTNMWV 243
Query: 477 NPALEYSVASVKGAN----VIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINK 532
NP Y A V+ + IV+K L + +I+V+ +F G+ L +P++
Sbjct: 244 NPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQ-DREIEVIEEFKGEKLIGKYVRNPVSG 302
Query: 533 EQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLA------------------LAEKIP 574
+ ++ +LPA FV TG+V PAH D + + E I
Sbjct: 303 D--EVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENIT 360
Query: 575 VLNLITNQGKYSPDAGPGLEGLNILG---------------------------------- 600
++LI +G A + L I
Sbjct: 361 YISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPV 420
Query: 601 -DGKDQVL-HLVEPDVLWT-ENYQHSYPYDWRTKKPVILKASQQWFID--TERIKPEALA 655
+ K+ + ++E + + + VI QWFID K +A
Sbjct: 421 QEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARK 480
Query: 656 CLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYD-------GDTIIVNEAN 708
LE + +PE+ + I +R+ G P+P + TI +
Sbjct: 481 ALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYT 540
Query: 709 IKHFCTLIDEHGPDFWWSLSVEQLLNTSD--VNSNVTKSNDILDIWFDSGISWSHVLKDK 766
I + L E+L + + ++ +GI + + K
Sbjct: 541 ISRHI-----NKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMK 595
Query: 767 -------PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSV 819
P G D I + VA+ + +G KMSKS
Sbjct: 596 EEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSK 655
Query: 820 GNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPT 879
GNV++ D + G DV+R ++ + A D
Sbjct: 656 GNVLNFIDAIEE-----------------------------NGADVVRLYIMSLAEHDSD 686
Query: 880 VPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSES---TGSISRYVDVYMLKRLCEFQNT 936
+ +V K+R + ++ +E + +D +ML RL +
Sbjct: 687 FDW-------RRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKE 739
Query: 937 MDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHV 996
EF+ A + ++N+L R Y G + + L + V
Sbjct: 740 TTNALEEFRTRTAVQWAFYSIMNDL----------RWYLRRTEGRDDEAKRYVLRTLADV 789
Query: 997 LLRTVAPIMPHLAEEVYSHLP 1017
+R +AP PH+ EE++ L
Sbjct: 790 WVRLMAPFTPHICEELWEKLG 810
Score = 258 bits (660), Expect = 1e-71
Identities = 103/525 (19%), Positives = 176/525 (33%), Gaps = 91/525 (17%)
Query: 7 LYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 66
++ + +F + PY +G H+GHA + D+ R +QG V + W
Sbjct: 22 IFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81
Query: 67 CHGLPIELKA--ITSKDKLL------------SPLDIRKKAKNFALETINTQKAEFESWG 112
G PI A I ++D L + N + K F G
Sbjct: 82 ITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAG 141
Query: 113 VLADWEHNCYHTFDK--EYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEY 170
DW ++T + K QF+ L ++ YI + V W P T L + +L
Sbjct: 142 FSVDWSRE-FYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLME 200
Query: 171 KPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASV 230
+ V Y+ IK L E ++ T P ++ + NP Y A V
Sbjct: 201 G-EDVPILDYIIIKF-----ELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKV 254
Query: 231 KGAN----VIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAG 286
+ + IV+K L + +IEV+ +F G+ L +P++ + ++ +LPA
Sbjct: 255 RRKDKEETWIVSKEAAYKLSFQ-DREIEVIEEFKGEKLIGKYVRNPVSGD--EVIILPAE 311
Query: 287 FVSSSKGTGLVHCAPAHGQDDFLLA------------------LAEKIPVLNLITNQGKY 328
FV TG+V PAH D + + E I ++LI +G
Sbjct: 312 FVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYG 371
Query: 329 SPDAGPGLEGLNILG-----------------------------------DGKDQVL-HL 352
A + L I + K+ + +
Sbjct: 372 DFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEM 431
Query: 353 VEPDVLWT-ENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGI 411
+E + + + VI QWFID + L R+ I
Sbjct: 432 LEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDY----GNPEWKEKARKALERMKI 487
Query: 412 THDRPGTALAESELEYKPDH-ISKSIYLKIKLNQVPAHLLEGATD 455
+ E+ +++ ++ I L L P ++E +D
Sbjct: 488 LPETRRAQF-EAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSD 531
Score = 77.3 bits (190), Expect = 2e-14
Identities = 22/117 (18%), Positives = 36/117 (30%), Gaps = 9/117 (7%)
Query: 1145 LWTENYQHSYPYDWRTKKPVILKASQQWFID--TERIKPEALACLEGVNFVPESAKKSLR 1202
+ + VI QWFID K +A LE + +PE+ +
Sbjct: 438 EIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFE 497
Query: 1203 DQIAQRPYWCISRQRVWGVPIPVFYD-------GDTIIVNEANIKHFCTLIDEHGPD 1252
I +R+ G P+P + TI + I + + G
Sbjct: 498 AIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKL 554
Score = 45.3 bits (107), Expect = 1e-04
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 1044 LYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLP 1088
Y G + + L + V +R +AP PH+ EE++ L
Sbjct: 766 WYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid,
aminoacylation, trnaLeu, structural genomics; 2.05A
{Pyrococcus horikoshii}
Length = 810
Score = 269 bits (688), Expect = 3e-76
Identities = 123/680 (18%), Positives = 216/680 (31%), Gaps = 140/680 (20%)
Query: 417 GTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAF 476
GT L + +L + + Y+ IK L E ++ T P ++ +
Sbjct: 190 GTPLGDHDLMEG-EDVPILDYIIIKF-----ELRENGEVIYLPAATLRPETVYGVTNMWV 243
Query: 477 NPALEYSVASVKG----ANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINK 532
NP Y A V+ IV+K L + +I+V+ +F G+ L +P++
Sbjct: 244 NPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQ-DREIEVIEEFKGEKLIGKYVRNPVSG 302
Query: 533 EQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLA------------------LAEKIP 574
++ + +LPA FV TG+V PAH D + + E I
Sbjct: 303 DE--VIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENIT 360
Query: 575 VLNLITNQGKYSPDAGPGLEGLNILG---------------------------------- 600
++LI +G A + L I
Sbjct: 361 YISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPV 420
Query: 601 -DGKDQVLHLVEPDVLWT--ENYQHSYPYDWRTKKPVILKASQQWFID--TERIKPEALA 655
+ K+ + + + + + VI QWFID K +A
Sbjct: 421 QEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARK 480
Query: 656 CLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYDGD-------TIIVNEAN 708
LE + +PE+ + I +R+ G P+P + TI +
Sbjct: 481 ALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYT 540
Query: 709 IKHFCTLIDEHGPDFWWSLSVEQLLNTSD--VNSNVTKSNDILDIWFDSGISWSHVLKDK 766
I + L E+L + + ++ +GI + + K
Sbjct: 541 ISRHI-----NKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMK 595
Query: 767 -------PAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSV 819
P G D I + VA+ + +G KMSKS
Sbjct: 596 EEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSK 655
Query: 820 GNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPT 879
GNV++ D + G DV+R ++ + A D
Sbjct: 656 GNVLNFIDAIE-----------------------------ENGADVVRLYIMSLAEHDSD 686
Query: 880 VPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSES---TGSISRYVDVYMLKRLCEFQNT 936
+ +V K+R + ++ +E + +D +ML RL +
Sbjct: 687 FDW-------RRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKE 739
Query: 937 MDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHV 996
EF+ A + ++N+L R Y G + + L + V
Sbjct: 740 TTNALEEFRTRTAVQWAFYSIMNDL----------RWYLRRTEGRDDEAKRYVLRTLADV 789
Query: 997 LLRTVAPIMPHLAEEVYSHL 1016
+R +AP PH+ EE++ L
Sbjct: 790 WVRLMAPFTPHICEELWEKL 809
Score = 236 bits (602), Expect = 6e-65
Identities = 100/525 (19%), Positives = 173/525 (32%), Gaps = 91/525 (17%)
Query: 7 LYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWD 66
++ + +F + PY +G H+GHA + D+ R +QG V + W
Sbjct: 22 IFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81
Query: 67 CHGLPIELKAITSKDKLLSPLDIRK--------------KAKNFALETINTQKAEFESWG 112
G PI A K++ + I + N + K F G
Sbjct: 82 ITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAG 141
Query: 113 VLADWEHNCYHTFD--KEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEY 170
DW ++T + K QF+ L ++ YI + V W P T L + +L
Sbjct: 142 FSVDWS-REFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLME 200
Query: 171 KPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASV 230
+ V Y+ IK L E ++ T P ++ + NP Y A V
Sbjct: 201 G-EDVPILDYIIIKF-----ELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKV 254
Query: 231 KG----ANVIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAG 286
+ IV+K L + +IEV+ +F G+ L +P++ ++ + +LPA
Sbjct: 255 RRKDKEETWIVSKEAAYKLSFQ-DREIEVIEEFKGEKLIGKYVRNPVSGDE--VIILPAE 311
Query: 287 FVSSSKGTGLVHCAPAHGQDDFLLA------------------LAEKIPVLNLITNQGKY 328
FV TG+V PAH D + + E I ++LI +G
Sbjct: 312 FVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYG 371
Query: 329 SPDAGPGLEGLNILG-----------------------------------DGKDQVLHLV 353
A + L I + K+ + +
Sbjct: 372 DFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKEM 431
Query: 354 EPDVLWT--ENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALVCKTVGNILGRVGI 411
+ + + VI QWFID + + K + +
Sbjct: 432 LEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERM-----K 486
Query: 412 THDRPGTALAESELEYKPDH-ISKSIYLKIKLNQVPAHLLEGATD 455
A E+ +++ ++ I L L P ++E +D
Sbjct: 487 ILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSD 531
Score = 76.9 bits (189), Expect = 2e-14
Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 14/124 (11%)
Query: 1148 ENYQHSYPYDWRTKKPVILKASQQWFID--TERIKPEALACLEGVNFVPESAKKSLRDQI 1205
+ + VI QWFID K +A LE + +PE+ + I
Sbjct: 441 YEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAII 500
Query: 1206 AQRPYWCISRQRVWGVPIPVFYDGD-------TIIVNEANIKHFCTLIDEHGPDFWWSLP 1258
+R+ G P+P + TI + I + L
Sbjct: 501 DWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHI-----NKLRQEGKLD 555
Query: 1259 VEQL 1262
E+L
Sbjct: 556 PEKL 559
Score = 44.2 bits (104), Expect = 3e-04
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 1039 IAKRILYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1087
+ Y G + + L + V +R +AP PH+ EE++ L
Sbjct: 761 MNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKL 809
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 180 bits (458), Expect = 2e-46
Identities = 115/508 (22%), Positives = 188/508 (37%), Gaps = 99/508 (19%)
Query: 544 FVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPG-LEGL------ 596
V GTG + PAH D+ + + +++I +G+ + P L GL
Sbjct: 259 AVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEAR 318
Query: 597 -NILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALA 655
+ ++ LV+ E+Y + R P+ QW++ + E L
Sbjct: 319 RKAVELFREAGH-LVK-----EEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLK 372
Query: 656 CLE--EVNFVPESAKKT-------LRDQIAQRPYWCISRQRVWGVPIPVFYDGDTIIVNE 706
L ++ FVPE KK ++D W ISRQ WG IP +Y D
Sbjct: 373 GLRRGDIAFVPERWKKVNMDWLENVKD-------WNISRQLWWGHQIPAWYCEDC----- 420
Query: 707 ANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSG---IS---WS 760
+ E + + + + + + D+ D WF S +S W
Sbjct: 421 ---QAVNVPRPERYLE-------DPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWP 470
Query: 761 HVLKDK----PAHVYMEGMDQINGW----FMSSLLTSVALKHTAPFRNVFLHGFVVDEKG 812
+D P V + G D + W +S PF+ V LHG V+DEKG
Sbjct: 471 EETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGY----HFMGERPFKTVLLHGLVLDEKG 526
Query: 813 AKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAA 872
KMSKS GNVI ++ + + YG D LR+ +
Sbjct: 527 QKMSKSKGNVIDPLEM----------------------VER-------YGADALRFALIY 557
Query: 873 HASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKRLCE 932
A+ + + L +++ K+ ++ R++L + + D +M RL
Sbjct: 558 LATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAKEDTPT-LADRFMRSRLSR 616
Query: 933 FQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHN 992
+ LY A+A+R + V +E +Y K L N TL
Sbjct: 617 GVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAG--NAHTL----RTLEE 670
Query: 993 IFHVLLRTVAPIMPHLAEEVYSHLPSRQ 1020
+ VLL+ + P+MP L E+Y L ++
Sbjct: 671 VLAVLLKLLHPMMPFLTSELYQALTGKE 698
Score = 86.5 bits (215), Expect = 3e-17
Identities = 86/398 (21%), Positives = 141/398 (35%), Gaps = 95/398 (23%)
Query: 27 PPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCH-GLPI--------ELKA- 76
PP G+ H+GHA++ L+D +R ++G ++PG D H G I L
Sbjct: 42 PPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTD-HAG--IATQVVVERLLLKE 98
Query: 77 -ITSKD----KLLSPLDIRKKA---KNFALETINTQKAEFESWGVLADWEHNCYHTFDKE 128
T D K L ++ K + TI Q + G ADW + T D++
Sbjct: 99 GKTRHDLGREKFL------ERVWQWKEESGGTILKQ---LKRLGASADWSREAF-TMDEK 148
Query: 129 YVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIYLKIKLNQV 188
+ F Y + YR + V W P T L++ E+E + K L+ ++
Sbjct: 149 RSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETE-PTPGKLYTLRYEV--- 204
Query: 189 PAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALE-YSVASVKGANVIVAKCLVESLKW 247
EG I T P ++ A+Q IA +P E Y + G + L E
Sbjct: 205 -----EGGG--FIEIATVRPETVFADQAIAVHPEDERY--RHLLGKRARIP--LTE---- 249
Query: 248 TFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDD 307
I ++ D V GTG + PAH D
Sbjct: 250 ---VWIPILAD---------------------------PAVEKDFGTGALKVTPAHDPLD 279
Query: 308 FLLALAEKIPVLNLITNQGKYSPDAGPG-LEGL-------NILGDGKDQVLHLVEPDVLW 359
+ + + +++I +G+ + P L GL + ++ LV+
Sbjct: 280 YEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGH-LVK----- 333
Query: 360 TENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 397
E+Y + R P+ QW++ + E L
Sbjct: 334 EEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVL 371
Score = 70.3 bits (173), Expect = 3e-12
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 18/102 (17%)
Query: 1147 TENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEG--VNFVPESAKKS---- 1200
E+Y + R P+ QW++ + E L L + FVPE KK
Sbjct: 334 EEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDW 393
Query: 1201 ---LRDQIAQRPYWCISRQRVWGVPIPVFY--DGDTIIVNEA 1237
++D W ISRQ WG IP +Y D + V
Sbjct: 394 LENVKD-------WNISRQLWWGHQIPAWYCEDCQAVNVPRP 428
Score = 37.2 bits (87), Expect = 0.042
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 1039 IAKRILYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQ 1091
AK L N TL + VLL+ + P+MP L E+Y L ++
Sbjct: 652 AAKPALKAG--NAHTL----RTLEEVLAVLLKLLHPMMPFLTSELYQALTGKE 698
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A*
1wk8_A* 1udz_A 1ue0_A
Length = 186
Score = 154 bits (393), Expect = 3e-43
Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 11/193 (5%)
Query: 176 SKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANV 235
S+Y++ L + LE A LIWTTTPW+LP N A +P Y+ V +
Sbjct: 3 DPSVYVRFPLKEPKKLGLEKA---SLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEAL 59
Query: 236 IVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKE-QRDLKLLPAGFVSSSKGT 294
I+ + L L V+ FPG+ L+ + Y P + ++ ++ A +VS GT
Sbjct: 60 ILEEGLGRKLLG---EGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGT 116
Query: 295 GLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVE 354
G+VH APA G +D A +P+L + +GK +GL + + L
Sbjct: 117 GIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLV---EPFKGLYFREANRAILRDLRG 173
Query: 355 PDVLW-TENYQHS 366
+L+ E+Y HS
Sbjct: 174 RGLLFKEESYLHS 186
Score = 151 bits (384), Expect = 4e-42
Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 11/193 (5%)
Query: 433 SKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANV 492
S+Y++ L + LE A LIWTTTPW+LP N A +P Y+ V +
Sbjct: 3 DPSVYVRFPLKEPKKLGLEKA---SLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEAL 59
Query: 493 IVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKE-QRDLKLLPAGFVSSSKGT 551
I+ + L L V+ FPG+ L+ + Y P + ++ ++ A +VS GT
Sbjct: 60 ILEEGLGRKLLG---EGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGT 116
Query: 552 GLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVE 611
G+VH APA G +D A +P+L + +GK +GL + + L
Sbjct: 117 GIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLV---EPFKGLYFREANRAILRDLRG 173
Query: 612 PDVLW-TENYQHS 623
+L+ E+Y HS
Sbjct: 174 RGLLFKEESYLHS 186
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase,
phosphoprotein, editing domain, nucleotide-binding,
hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Length = 252
Score = 134 bits (338), Expect = 3e-35
Identities = 42/247 (17%), Positives = 86/247 (34%), Gaps = 24/247 (9%)
Query: 438 LKIKLNQVPAHLLE--GATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVK-GANVIV 494
LK+K+ + L ++ + T P ++ P ++Y G I
Sbjct: 10 LKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFIC 69
Query: 495 AKCLVENLKWTFQT----DIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKG 550
+ N+ + T + VV + G+ + + P+ + + +LP + KG
Sbjct: 70 TQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLSAPLTSY-KVIYVLPMLTIKEDKG 128
Query: 551 TGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGP--GLEGLNILGDGKDQVLH 608
TG+V P+ DD AL + L G P + + I G G +
Sbjct: 129 TGVVTSVPSDSPDDI-AALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVT 187
Query: 609 LVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAK 668
+ + Q+ K+ + LK + + + K + + + K
Sbjct: 188 ICDE---LKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGFKGQKV----------QDVK 234
Query: 669 KTLRDQI 675
KT++ ++
Sbjct: 235 KTIQKKM 241
Score = 132 bits (334), Expect = 1e-34
Identities = 38/226 (16%), Positives = 78/226 (34%), Gaps = 14/226 (6%)
Query: 181 LKIKLNQVPAHLLE--GATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVK-GANVIV 237
LK+K+ + L ++ + T P ++ P ++Y G I
Sbjct: 10 LKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFIC 69
Query: 238 AKCLVESLKWTFQT----DIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKG 293
+ ++ + T + VV + G+ + + P+ + + +LP + KG
Sbjct: 70 TQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLSAPLTSY-KVIYVLPMLTIKEDKG 128
Query: 294 TGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGP--GLEGLNILGDGKDQVLH 351
TG+V P+ DD AL + L G P + + I G G +
Sbjct: 129 TGVVTSVPSDSPDDI-AALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVT 187
Query: 352 LVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEAL 397
+ + Q+ K+ + LK + + + K + +
Sbjct: 188 ICDE---LKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGFKGQKV 230
Score = 33.8 bits (77), Expect = 0.32
Identities = 7/57 (12%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 1149 NYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQI 1205
Q+ K+ + LK + + + K + + + KK+++ ++
Sbjct: 195 QSQNDREKLAEAKEKIYLKGFYEGIMLVDGFKGQKV----------QDVKKTIQKKM 241
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase;
2.60A {Giardia intestinalis}
Length = 311
Score = 125 bits (315), Expect = 1e-31
Identities = 36/224 (16%), Positives = 78/224 (34%), Gaps = 16/224 (7%)
Query: 128 EY--VKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIYLKIKL 185
EY +K +L + L ++ + + + ++ + + K
Sbjct: 10 EYIGIKLELINYTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFY--SNPKNKAIF 67
Query: 186 NQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVK-GANVIVAKCLVES 244
+Q+ + ++ A ++ L T P ++ P Y + +IV++ +
Sbjct: 68 DQLWENQVDNA-KVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAAVN 126
Query: 245 L------KWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVH 298
+ +++ + + G L T P++ + +LP + KGTG+V
Sbjct: 127 MAHQGLNNNKPFGELDFISEISGSDLLLATVRAPLS-PYEQIFVLPLETIKMDKGTGIVT 185
Query: 299 CAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNIL 342
P+ DD+ + KY D G LE + L
Sbjct: 186 SVPSDAPDDYACYKDILENRNGIAE---KYGVDVGLMLEPYSPL 226
Score = 114 bits (286), Expect = 7e-28
Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 12/192 (6%)
Query: 415 RPGTALAESELEYKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFI 474
+L K + K +Q+ + ++ A ++ L T P ++
Sbjct: 40 DGMDDSLAEKLNIKLPRFYSNPKNKAIFDQLWENQVDNA-KVYLLAATLRPETMVGQTNC 98
Query: 475 AFNPALEYSVASVK-GANVIVAKCLVENL------KWTFQTDIDVVCDFPGQYLQDITYI 527
P Y + +IV++ N+ ++D + + G L T
Sbjct: 99 WVLPTGRYGAYYINKDEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVR 158
Query: 528 HPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSP 587
P++ + +LP + KGTG+V P+ DD+ + KY
Sbjct: 159 APLS-PYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAE---KYGV 214
Query: 588 DAGPGLEGLNIL 599
D G LE + L
Sbjct: 215 DVGLMLEPYSPL 226
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain,
hydrolysis of MIS-charged trnas, benzoxaborole,
anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB:
2wfe_A*
Length = 261
Score = 118 bits (297), Expect = 1e-29
Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 15/152 (9%)
Query: 168 LEY-----KPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPA 222
+ Y + V+ K + ++ + T P ++ +P
Sbjct: 1 MGYVGIKIRLTDVAPQAQELFKKESLDV----KENKVYLVAATLRPETMYGQTCCFVSPK 56
Query: 223 LEYSVASVKGANVIV-----AKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQ 277
++Y V + + K + + + + G+ L P
Sbjct: 57 IDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVN- 115
Query: 278 RDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFL 309
++L++LP V ++KGTG+V C P+ DDF+
Sbjct: 116 KNLRVLPMETVLATKGTGVVTCVPSDSPDDFV 147
Score = 117 bits (295), Expect = 2e-29
Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 7/148 (4%)
Query: 425 LEYKPDHISKS-IYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYS 483
+ Y I + + + + L ++ + T P ++ +P ++Y
Sbjct: 1 MGYVGIKIRLTDVAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYG 60
Query: 484 VASVKGANVIVA-KCLVENLKWTFQT----DIDVVCDFPGQYLQDITYIHPINKEQRDLK 538
V + + + +N+ + T + G+ L P ++L+
Sbjct: 61 VFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVN-KNLR 119
Query: 539 LLPAGFVSSSKGTGLVHCAPAHGQDDFL 566
+LP V ++KGTG+V C P+ DDF+
Sbjct: 120 VLPMETVLATKGTGVVTCVPSDSPDDFV 147
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 67.3 bits (165), Expect = 2e-11
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPL 87
PYANG+ H+GH + I D+ +R ++G V+++ D HG PI LKA ++P
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLG---ITPE 83
Query: 88 DIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQ--FYNLYKQDY 145
+ + + +F + + D N + T +E + L + + L + +
Sbjct: 84 QMIGEMS-------QEHQTDFAGFNISYD---NYHSTHSEENRQ--LSELIYSRLKENGF 131
Query: 146 IYRDLKPVYWSPSSRTALA 164
I + P L
Sbjct: 132 IKNRTISQLYDPEKGMFLP 150
Score = 47.2 bits (113), Expect = 3e-05
Identities = 44/230 (19%), Positives = 79/230 (34%), Gaps = 55/230 (23%)
Query: 800 NVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLP 859
N+F+HG+V GAKMSKS G I A L
Sbjct: 332 NLFVHGYVTVN-GAKMSKSRGTFIKASTW-----------------------------LN 361
Query: 860 AYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNH-SESTGSI 918
+ D LR++ A S +I + +D VQ++ + + + + N S + G I
Sbjct: 362 HFDADSLRYYYTAKLS-----SRIDDIDLNLEDFVQRVNADI---VNKVVNLASRNAGFI 413
Query: 919 SRY---------VDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFV--VNELSAFYFT 967
++ D + K + + + ++ +A R ++ N Y
Sbjct: 414 NKRFDGVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANR----YVD 469
Query: 968 LVKD-RLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
+ + N+F VL+ + P++P L E + L
Sbjct: 470 EQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFL 519
Score = 29.9 bits (68), Expect = 6.9
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 1058 LHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYHHLN 1107
N+F VL+ + P++P L E + L + + T+ + H +N
Sbjct: 490 CSMGINLFRVLMTYLKPVLPKLTERAEAFL-NTELTWDGIQQPLLGHKVN 538
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 67.4 bits (165), Expect = 2e-11
Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 18/141 (12%)
Query: 28 PYANGTPHIGHAVNKILK-DITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSP 86
PYANG H GH L DI +R L+G+ V ++ G D HG PI +A+ SP
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEG---RSP 67
Query: 87 LDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQ--FYNLYKQD 144
+ E K F+ + D T + K L Q F Y+
Sbjct: 68 -------REIVDEFHEQIKITFQRAKISFD---FFGRTELPIHYK--LSQEFFLKAYENG 115
Query: 145 YIYRDLKPVYWSPSSRTALAE 165
++ + + + + L +
Sbjct: 116 HLVKKVTKQAYCEHDKMFLPD 136
Score = 48.9 bits (117), Expect = 9e-06
Identities = 35/241 (14%), Positives = 72/241 (29%), Gaps = 76/241 (31%)
Query: 800 NVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLP 859
++ + ++ E G K S S I H+ L
Sbjct: 331 DIPANEYLTLE-GKKFSTSRNWAIWVHEF-----------------------------LD 360
Query: 860 AYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSL----------------RY 903
+ D LR+++ P ++ S D +I L RY
Sbjct: 361 VFPADYLRYYLTTIM------PETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRY 414
Query: 904 LLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFV--VNEL 961
GV+ E +D L+ + + + L +++ A + +++ N
Sbjct: 415 FDGVVPERGELDE-----LDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNR- 468
Query: 962 SAFYF------TLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSH 1015
YF K+ + + ++ I L + P +P +E+++
Sbjct: 469 ---YFDHKQPWKTAKE-------DKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHL 518
Query: 1016 L 1016
L
Sbjct: 519 L 519
Score = 43.2 bits (102), Expect = 6e-04
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 14/77 (18%)
Query: 630 TKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKT-------LRDQIAQRPYWC 682
+P+ + S ++I + +E+ + P L +
Sbjct: 176 CGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEE-------RA 228
Query: 683 ISRQRVWGVPIPVFYDG 699
I+R WG+P+P+ +
Sbjct: 229 ITRDLNWGIPVPLDEED 245
Score = 41.2 bits (97), Expect = 0.002
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 14/77 (18%)
Query: 1160 TKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKS-------LRDQIAQRPYWC 1212
+P+ + S ++I + +E + P L +
Sbjct: 176 CGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEE-------RA 228
Query: 1213 ISRQRVWGVPIPVFYDG 1229
I+R WG+P+P+ +
Sbjct: 229 ITRDLNWGIPVPLDEED 245
Score = 30.8 bits (70), Expect = 3.4
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 1058 LHTLHNIFHVLLRTVAPIMPHLAEEVYSHLPSRQGTFSSFCHFKVYHHLN 1107
++ I L + P +P +E+++ L + F H +
Sbjct: 490 VNISLQIVKALGILLEPFLPDASEKIWHLLNLDEVKRWEFRELPAGHKVR 539
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 3e-10
Identities = 85/600 (14%), Positives = 171/600 (28%), Gaps = 202/600 (33%)
Query: 21 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK 80
++ P G +N L + + L+G +H + L E K
Sbjct: 67 YVSSLVEPSKVG--QFDQVLNLCLTEFE--NCYLEGNDIHAL----AAKLLQENDTTLVK 118
Query: 81 DKLLSPLDIRK--KAKNFALETIN--TQKAEFESWGVLADWEHNCYHTF-----DKEYVK 131
K L I+ A+ A + + A F + + + F +Y +
Sbjct: 119 TKEL----IKNYITARIMAKRPFDKKSNSALFRA---VGEGNAQLVAIFGGQGNTDDYFE 171
Query: 132 NQLCQFYNLYK---QDYIYR---DLKPVYWSPSSRTALAESELEYKPDHVSKSIYLKIKL 185
+L Y Y D I L L + L+ + ++ +
Sbjct: 172 -ELRDLYQTYHVLVGDLIKFSAETLSE----------LIRTTLDAEKVF-TQGL------ 213
Query: 186 NQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNP----------ALEYSV-------- 227
++ W P + P ++ P Y V
Sbjct: 214 ------------NILE--WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 228 ----------ASVKGANVIVAKCLVESLKW-TFQTDIEVVCDFPGQYLQDITYIHPINKE 276
A+ ++ A + E+ W +F + + + + +I
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR-------KAITVLFFI------ 306
Query: 277 QRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGL 336
G+ + + P +L + + S + G+
Sbjct: 307 ------------------GV------RCYEAY--------PNTSLPPSILEDSLENNEGV 334
Query: 337 EG--LNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVI-LKASQQWFIDTERIK 393
L+I ++QV V N P K+ I L + + +
Sbjct: 335 PSPMLSISNLTQEQVQDYVN-----KTN--SHLP---AGKQVEISLVNGAKNLVVSGP-- 382
Query: 394 PEALVCKTVGNILGRVGITHDRPGTALAESELEY---KPDHISKSIYLKIKLNQVPAH-- 448
P++L + L + + + L +S + + K S +L + P H
Sbjct: 383 PQSLY--GLNLTLRKA-----KAPSGLDQSRIPFSERKL-KFSNR-FLPV---ASPFHSH 430
Query: 449 LLEGATDL-------HALIWTTTPWSLPANQFIAFNPALEYSVASVKGANV--------- 492
LL A+DL + + + +P Y G+++
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPV-----------YDTFD--GSDLRVLSGSISE 477
Query: 493 -IVAKCLVENLKWTFQTDIDV--VCDF-PGQYLQDITYIHPINKEQRDLKLLPAGFVSSS 548
IV + +KW T + DF PG + + NK+ ++++ AG + +
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFGPGG-ASGLGVLTHRNKDGTGVRVIVAGTLDIN 536
Score = 54.7 bits (131), Expect = 2e-07
Identities = 79/542 (14%), Positives = 150/542 (27%), Gaps = 215/542 (39%)
Query: 869 WVAAHASKD------PTVPIGKNILNSSQDDVQKIRSSL--RYLLGVLHNHSESTGSISR 920
+ A ++ P G + DD + L ++L V + + +
Sbjct: 27 FFIASQLQEQFNKILPEPTEG-----FAADDEPTTPAELVGKFLGYV--SSLVEPSKVGQ 79
Query: 921 YVDVYMLKR-LCEFQNT-----------------MDTLYGEFQ-----YARASRVLLNFV 957
+ V L L EF+N DT + + Y A R++
Sbjct: 80 FDQV--LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA-RIMAKRP 136
Query: 958 VNEL--SAFYFTLVKD---RLYCDSI-----NGEARLSGLHTLHNIFHV----LLRTVAP 1003
++ SA F V + +L +I N + L L+ +HV L++ A
Sbjct: 137 FDKKSNSAL-FRAVGEGNAQLV--AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 1004 IMPHL------AEEVYSH-------------LPSRQ----GTFS-------SFCHFKVYL 1033
+ L AE+V++ P + S H+ V
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 1034 QYSG---SIAKRILYCDSINGEARLSGL----------------HTLHNIFHVLLR---- 1070
+ G + L + + + ++ + + +F + +R
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 1071 ----TVAPIM-------------PHLA-------------EEVYSHLPSRQGTFSSFCHF 1100
++ P + P L+ + SHLP+ +
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK--------- 364
Query: 1101 KVYHHLNLITNQGKYSPD----AGP--GLEGLNILGEGKDQVLHLVEPDVLWTENYQHSY 1154
+V ++L+ N +GP L GLN+ L + + Q
Sbjct: 365 QV--EISLV-N----GAKNLVVSGPPQSLYGLNLT-------LRKAKAP---SGLDQSRI 407
Query: 1155 PYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESA---KKSLRDQIAQRPYW 1211
P+ R K F+P ++ L
Sbjct: 408 PFSER--KLKF-----------------------SNRFLPVASPFHSHLLVPASDLINKD 442
Query: 1212 CISRQRVWGVP---IPVF--YDGDTIIVNEANIKHFCTLIDE--HGPDFWWSLPVEQLLN 1264
+ + IPV+ +DG + V +I ++D P W E
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE--RIVDCIIRLPVKW-----ETTTQ 495
Query: 1265 TS 1266
Sbjct: 496 FK 497
Score = 51.6 bits (123), Expect = 2e-06
Identities = 114/648 (17%), Positives = 196/648 (30%), Gaps = 231/648 (35%)
Query: 204 WTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIEVVCDFPGQY 263
++T P +L + +LE+ + V A+ +A L+ F + + +
Sbjct: 4 YSTRPLTLS-------HGSLEHVL-LVPTASFFIA----SQLQEQFNKILPEPTE---GF 48
Query: 264 LQDITYIHPINKEQRDL--KLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNL 321
D P +L K L G+VSS LV + GQ D +L L L
Sbjct: 49 AADDEPTTPA-----ELVGKFL--GYVSS-----LVEPSKV-GQFDQVLNL-----CLTE 90
Query: 322 ITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVI--- 378
N L G D +H + K +I
Sbjct: 91 FEN---------------CYLE-GND--IHAL------AAKLLQENDTTLVKTKELIKNY 126
Query: 379 LKASQQWFIDTERIKPEALVCKTV--GN-----ILGRVGITHDRPGTALAE-SEL--EYK 428
+ A ++ AL + V GN I G G T D E +L Y
Sbjct: 127 ITARIMAKRPFDKKSNSALF-RAVGEGNAQLVAIFGGQGNTDDY----FEELRDLYQTYH 181
Query: 429 P---DHISKSIYLKIKLNQVPAH---LLEGATDLHALIWTTTPWSLPANQFIAFNPALEY 482
D I S +L + + ++ W P + P ++ P
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE--WLENPSNTPDKDYLLSIP---I 236
Query: 483 SVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPA 542
S +I ++ Q Y+ +T + L P
Sbjct: 237 SC------PLI---GVI-------QL---------AHYV--VT--------AKLLGFTPG 261
Query: 543 GFVSSSKGT-----GLVH---CAPAHGQDDFLLALAEKI--------------PVLNLIT 580
S KG GLV A + F +++ + I P +L
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 581 NQGKYSPDAGPGLEG--LNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKA 638
+ + S + G+ L+I ++QV V N H L A
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVN-----KTN-SH-------------LPA 362
Query: 639 SQQWFIDTERIKPEALACLEEVN----FV----PES---AKKTLR--------DQIAQRP 679
+Q I +L VN V P+S TLR DQ ++ P
Sbjct: 363 GKQVEI--------SL-----VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-SRIP 408
Query: 680 YWCISRQR--VWGV---PI--PVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQL 732
+ +R + P+ P F+ + ++ A+ LI++ S + + +
Sbjct: 409 F----SERKLKFSNRFLPVASP-FH---SHLLVPAS-----DLINKDLVKNNVSFNAKDI 455
Query: 733 ----LNTSD------VNSNVTKSNDILDIWFDSGISWSHVLKDKPAHV 770
+T D ++ ++++ I+D + W + K H+
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISER--IVDCIIRLPVKWETTTQFKATHI 501
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 1e-09
Identities = 100/678 (14%), Positives = 202/678 (29%), Gaps = 182/678 (26%)
Query: 119 HNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSP------------SSRTALAES 166
H+ +H D E + Y Y+D+ V+ ++ L++
Sbjct: 1 HHHHHHMDFE-----------TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE 49
Query: 167 ELEY---KPDHVSKSIYLKIKL----NQVPAHLLEGATDLHALIWTTTPWSLPANQFIAF 219
E+++ D VS ++ L L ++ +E ++ + +P Q
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKTEQRQ---- 104
Query: 220 NPALEYSVASVKGANVIVAKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRD 279
P++ + + D +V + +++ + P K ++
Sbjct: 105 -PSMMTR--------------MYIEQRDRLYNDNQVFAKY------NVSRLQPYLKLRQA 143
Query: 280 L-KLLPAGFVS--SSKGTG---LVHCAPAHGQDDFLLALAEKIPVLNLITNQGKY-SPDA 332
L +L PA V G+G + + KI LNL SP+
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVA--LDVCLSYKVQCKMDFKIFWLNL----KNCNSPET 197
Query: 333 GPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPY-----DWRTKKPVILKASQQ--- 384
LE L L L+ ++P+ WT HS + + +LK+
Sbjct: 198 --VLEMLQKL-------LYQIDPN--WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 385 -------WFIDTERIKPEALVCKT--------VGNILGRVGITH---DRPGTALAESELE 426
+ + L CK V + L TH D L E++
Sbjct: 247 LLVLLNVQ--NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 427 YKPDHISKSIYLKIKLNQVPAHLLEGATDLHALIW--------TTTPWSLPANQFIAFNP 478
+ K YL + +P +L ++I T W
Sbjct: 305 ---SLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--NCDKLTT 357
Query: 479 ALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLK 538
+E S+ ++ A + + + L F + P L + + + D+
Sbjct: 358 IIESSLNVLEPAEY---RKMFDRLS-VFPPSAHI----PTILLS----LIWFDVIKSDVM 405
Query: 539 LLPAGFVSSSKGTGLVHCAPA------HGQDDFLLALAEKIPVLN--LITN---QGKYSP 587
++ S LV P L E L+ ++ + +
Sbjct: 406 VVVNKLHKYS----LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 588 D--AGPGLEG--LNILG--------DGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVI 635
D P L+ + +G + + +V D + E W ++
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 636 -----LKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWG 690
LK + + D + + + +F+P+ + + Y +
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAIL--DFLPKIEENLICS-----KYTDL------- 567
Query: 691 VPIPVFYDGDTIIVNEAN 708
+ I + + + I EA+
Sbjct: 568 LRIALMAEDEAIF-EEAH 584
Score = 49.1 bits (116), Expect = 9e-06
Identities = 86/660 (13%), Positives = 190/660 (28%), Gaps = 214/660 (32%)
Query: 699 GDTIIVNEAN-IKHF-CTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSG 756
D + V E + +F C + + + +L+ +++ + + +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQD---------MPKSILSKEEIDHIIMSKDAVSGTLR--- 66
Query: 757 ISWSHVLKDKPAHVY---MEGMDQIN-GWFMSSLLT------------------------ 788
+ W L K + +E + +IN + MS + T
Sbjct: 67 LFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 789 -----SV-----------ALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGA 832
+V AL P +NV + G G+ K+
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV----LGS--GKTW------------- 165
Query: 833 KKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQD 892
+ +V ++ + + + + +W+ + NS +
Sbjct: 166 --V------ALDVCLSYKV----QCKMDFKI----FWLN----------LKN--CNSPET 197
Query: 893 DVQKIRSSLRYLLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRV 952
++ ++ L + + S+ + +I R+ Q + L Y V
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKL--------RIHSIQAELRRLLKSKPYENCLLV 249
Query: 953 LLNFV--VNELSAFYF---TLV--KDRLYCDSING--------EARLSGLHTLHNIFHVL 997
LLN V +AF L+ + + D ++ + L T + +L
Sbjct: 250 LLN-VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLL 307
Query: 998 LRTVAPIMPHLAEEVYSHLPSRQGTFSSF-----CHFKVYLQYSGSIAKRILYCDSIN-- 1050
L+ + L EV + P R + + + + I+ S+N
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVL 366
Query: 1051 --GEAR-----LSGLHTLHNIF--------HVLLR--------TVAPIMPHLA------- 1080
E R LS +F +L V ++ L
Sbjct: 367 EPAEYRKMFDRLS-------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 1081 --EEVYSHLPSRQGTFSSFCHFKVYHHLNLITN---QGKYSPD--AGPGLEG--LNILG- 1130
+E +PS + H +++ + + D P L+ + +G
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 1131 -------EGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVI-----LKASQQWFIDTER 1178
+ + +V D + E W ++ LK + + D +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 1179 IKPEALACLEGVNFVPESAKKSLRDQIAQRPYWCISRQRVWGVPIPVFYDGDTIIVNEAN 1238
+ + +F+P+ + + Y + + I + + + I EA+
Sbjct: 540 KYERLVNAIL--DFLPKIEENLICS-----KYTDL-------LRIALMAEDEAIF-EEAH 584
Score = 39.5 bits (91), Expect = 0.010
Identities = 91/628 (14%), Positives = 172/628 (27%), Gaps = 194/628 (30%)
Query: 8 YSWQREALNGKP--------EFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRV 59
Y + + + +I Y + + V+++ + LR LL+ +
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 60 HYVPGWDCHGLPIELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEFE-SWGVLADWE 118
V G+ + K + AL+ + K + + + + W
Sbjct: 151 KNVL---IDGV-----LGSGKTWV-------------ALDVCLSYKVQCKMDFKIF--WL 187
Query: 119 H--NCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVS 176
+ NC + ++ L Q + P + S S ++ + +
Sbjct: 188 NLKNC--NSPETVLEMLQ----KLLYQ------IDPNWTSRSDHSSNIKLRIH------- 228
Query: 177 KSIYLKIKLNQVPAHLLEGATDLHALI-----WTTTPWSLPANQFIAFNPALEYSVASVK 231
++ +L LL+ + L+ W+ AFN
Sbjct: 229 ---SIQAELR----RLLKSKPYENCLLVLLNVQNAKAWN-------AFNL---------- 264
Query: 232 GANVIVAKC--LVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINKEQRD--LKLLPAGF 287
C L+ + +V I+ H D LL +
Sbjct: 265 -------SCKILLTT------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKY 310
Query: 288 VSSSKGTGLVHCAP--AHGQDDFLLAL-AEKIPVLNLITNQGKYSPDAGPGLEGLNILGD 344
+ P + L++ AE I + K+
Sbjct: 311 LDCR-----PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--------------- 350
Query: 345 GKDQVLHLVEP--DVLWTENYQHSY------PYDWRTKKP----VILKASQQWFIDTERI 392
D++ ++E +VL Y+ + P P ++ WF D +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS--AHIPTILLSLI-----WF-DVIKS 402
Query: 393 KPEALVCKTVGNILGRVGITHDRPGTALAESELEYKPDHIS-KSIYLKIKLNQVPAHLLE 451
+V K H +L E + K IS SIYL++K+ LE
Sbjct: 403 DVMVVVNK-----------LHKY---SLVEK--QPKESTISIPSIYLELKVK------LE 440
Query: 452 GATDLHALIWTT-------TPWSLPAN-------QFIAF-----NPALEYSVASVKGANV 492
LH I L I ++ + +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 493 --IVAKCLVENLKWTFQTDI-DVVCDFPGQYLQDITYIHPINKEQRD--LKLLP--AGFV 545
+ K ++ W I + + Y I P + + L LP +
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 546 SSSKGTGLVHCAPAHGQDDFLLALAEKI 573
SK T L+ A +D+ + A K
Sbjct: 560 ICSKYTDLLRIALMA-EDEAIFEEAHKQ 586
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 60.3 bits (147), Expect = 4e-09
Identities = 41/191 (21%), Positives = 61/191 (31%), Gaps = 60/191 (31%)
Query: 527 IHPINKEQRDLKLLP---AGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQG 583
+HP+ E+ +P A FV GTG V P H Q D+ A + + +I
Sbjct: 330 VHPLTGEE-----IPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAAD 384
Query: 584 KYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWF 643
PD L + G L +S ++
Sbjct: 385 GSEPD----LSQQALTEKGV-----LF-----------NSGEFN---------------G 409
Query: 644 IDTERIKPEALACLEEVNFVPESAKKT----LRDQIAQRPYWCISRQRVWGVPIPVFY-- 697
+D E L + ++ LRD W +SRQR WG PIP+
Sbjct: 410 LDHEAAFNAIADKLTAMGV----GERKVNYRLRD-------WGVSRQRYWGAPIPMVTLE 458
Query: 698 DGDTIIVNEAN 708
DG + +
Sbjct: 459 DGTVMPTPDDQ 469
Score = 51.4 bits (124), Expect = 2e-06
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRV-HYVP-GWDCHGLPIELKAITSKDKLLS 85
PY +G H+GH N + D+ R + GK V P GWD GLP E A+ + +
Sbjct: 62 PYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQ--PIGWDAFGLPAEGAAVKNN---TA 116
Query: 86 PLDIRKKAKNFALETINTQKAEFESWGVLADW--EHNCYHTFDKEYVK-NQLCQFYNLYK 142
P + + I K + + G DW E T EY + Q F LYK
Sbjct: 117 P-------APWTYDNIAYMKNQLKMLGFGYDWSRELA---TCTPEYYRWEQKF-FTELYK 165
Query: 143 QDYIYRDLKPVYWSPSSRTALA 164
+ +Y+ V W P+ +T LA
Sbjct: 166 KGLVYKKTSAVNWCPNDQTVLA 187
Score = 46.4 bits (111), Expect = 7e-05
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 1201 LRDQIAQRPYWCISRQRVWGVPIPVFY--DGDTIIVNEAN 1238
LRD W +SRQR WG PIP+ DG + +
Sbjct: 437 LRD-------WGVSRQRYWGAPIPMVTLEDGTVMPTPDDQ 469
Score = 36.8 bits (86), Expect = 0.049
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 270 IHPINKEQRDLKLLP---AGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQG 326
+HP+ E+ +P A FV GTG V P H Q D+ A + + +I
Sbjct: 330 VHPLTGEE-----IPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAAD 384
Query: 327 KYSPD 331
PD
Sbjct: 385 GSEPD 389
Score = 34.1 bits (79), Expect = 0.38
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 989 TLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
+ ++R + P PH+ ++ L
Sbjct: 769 LMQEALLAVVRMLNPFTPHICFTLWQEL 796
Score = 34.1 bits (79), Expect = 0.38
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 1060 TLHNIFHVLLRTVAPIMPHLAEEVYSHL 1087
+ ++R + P PH+ ++ L
Sbjct: 769 LMQEALLAVVRMLNPFTPHICFTLWQEL 796
Score = 31.0 bits (71), Expect = 3.0
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 762 VLKDKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKG-AKMSKSVG 820
VL D Y G + W + + G + G +KMSKS
Sbjct: 589 VLADA---FYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKN 645
Query: 821 NVISAHDITQ--GA 832
N I + + GA
Sbjct: 646 NGIDPQVMVERYGA 659
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 57.7 bits (139), Expect = 2e-08
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 13/145 (8%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPLD 88
Y N PHIGH + ++ D+ R + ++G+RV + G D HG + A K K +SP
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAA---KQKQVSP-- 73
Query: 89 IRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYR 148
+F K FE D T ++++ + L ++ IY
Sbjct: 74 -----YDFTTAVAGEFKKXFEQMDYSID---YFIRTTNEQHKAVVKELWTKLEQKGDIYL 125
Query: 149 DLKPVYWSPSSRTALAESELEYKPD 173
++S S + L + D
Sbjct: 126 GRYEGWYSISDESFLTPQNITDGVD 150
Score = 52.7 bits (126), Expect = 6e-07
Identities = 61/425 (14%), Positives = 128/425 (30%), Gaps = 117/425 (27%)
Query: 621 QHSYPYDWRTKKPVILKAS--QQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQR 678
+ + W +++ + + S ++ ++ P + V + +K L D R
Sbjct: 161 ESGHVVTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSR 220
Query: 679 PYWCISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDV 738
+ W +P+P + + W ++ L S +
Sbjct: 221 AR---ATLHNWAIPVPG---------------------NPDHXVYVWLDALTNYLTGSRL 256
Query: 739 NSNVTKSNDILDIWFDSGISWSHVLKDKPAHVYMEGMD--QINGWFMSSLLTSVALKHTA 796
+ + L F+ + PA V++ G D + + + + L S L
Sbjct: 257 RVDESGKEVSLVDDFNELERF-------PADVHVIGKDILKFHAIYWPAFLLSAGLP--- 306
Query: 797 PFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAK 856
+ + HG+ + K+SKS+GNV + +
Sbjct: 307 LPKKIVAHGWWTKD-RKKISKSLGNVFDPVEKAE-------------------------- 339
Query: 857 KLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSESTG 916
+G D L++++ + S ++ + ++ L LG L
Sbjct: 340 ---EFGYDALKYFLLRE------SGFSDDGDYSDKNMIARLNGELADTLGNLVMR---CT 387
Query: 917 SISRY-------------VDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFV--VNEL 961
S D +++ + + T D Y +A + + + +N
Sbjct: 388 SAKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINA- 446
Query: 962 SAFYFT------LVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVA----PIMPHLAEE 1011
Y T LVK RL L+ + R PI+P +
Sbjct: 447 ---YVTDMAPWKLVKT--------DPERLR--TVLYITLEGV-RVTTLLLSPILPRKSVV 492
Query: 1012 VYSHL 1016
++ L
Sbjct: 493 IFDML 497
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 57.6 bits (140), Expect = 2e-08
Identities = 46/191 (24%), Positives = 68/191 (35%), Gaps = 60/191 (31%)
Query: 527 IHPINKEQRDLKLLP---AGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQG 583
++P E+ +P A +V GTG + PAH Q D+ A +P+ +I G
Sbjct: 312 LNPATGER-----IPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPG 366
Query: 584 KYSPDAGPGLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWF 643
+ P+ G +V +S P+D
Sbjct: 367 EPLPE----PLERAYEEPGI-----MV-----------NSGPFDG--------------- 391
Query: 644 IDTERIKPEALACLEEVNFVPESAKKT----LRDQIAQRPYWCISRQRVWGVPIPVFY-- 697
++E K + +A LEE K LRD W ISRQR WG PIP+ +
Sbjct: 392 TESEEGKRKVIAWLEEKGL----GKGRVTYRLRD-------WLISRQRYWGTPIPMVHCE 440
Query: 698 DGDTIIVNEAN 708
+ V E
Sbjct: 441 ACGVVPVPEEE 451
Score = 54.9 bits (133), Expect = 1e-07
Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRV-HYVP-GWDCHGLPIELKAITSKDKLLS 85
PY +G H+GH N + D+ R +QG V H P GWD GLP E A+ +
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLH--PMGWDAFGLPAENAALKFG---VH 96
Query: 86 PLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVK-NQLCQFYNLYKQD 144
P K++ I K G+L DW+ T + EY + NQ F ++++
Sbjct: 97 P-------KDWTYANIRQAKESLRLMGILYDWDRE-VTTCEPEYYRWNQWI-FLKMWEKG 147
Query: 145 YIYRDLKPVYWSPSSRTALA 164
YR V W P +T LA
Sbjct: 148 LAYRAKGLVNWCPKCQTVLA 167
Score = 44.9 bits (107), Expect = 2e-04
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 1201 LRDQIAQRPYWCISRQRVWGVPIPVFY--DGDTIIVNEAN 1238
LRD W ISRQR WG PIP+ + + V E
Sbjct: 419 LRD-------WLISRQRYWGTPIPMVHCEACGVVPVPEEE 451
Score = 39.1 bits (92), Expect = 0.011
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 270 IHPINKEQRDLKLLP---AGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQG 326
++P E+ +P A +V GTG + PAH Q D+ A +P+ +I G
Sbjct: 312 LNPATGER-----IPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPG 366
Query: 327 KYSPD 331
+ P+
Sbjct: 367 EPLPE 371
Score = 36.0 bits (84), Expect = 0.087
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 36/102 (35%)
Query: 797 PFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYE----------------- 839
PF+ +F G V+ + G+V+ + T+ ++P
Sbjct: 567 PFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHE 626
Query: 840 -------------KSVGNVISAHDITQGAKKLPAYGVDVLRW 868
KS GN + + G D+ R
Sbjct: 627 DGTLHLWKPAVMSKSKGNGVMVGPFVK------EQGADIARI 662
Score = 34.9 bits (81), Expect = 0.24
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 994 FHVLLRTVAPIMPHLAEEVYSHL 1016
L+ + P PHLAEE++
Sbjct: 772 IRYYLQMLFPFAPHLAEELWHWF 794
Score = 34.9 bits (81), Expect = 0.24
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 1065 FHVLLRTVAPIMPHLAEEVYSHL 1087
L+ + P PHLAEE++
Sbjct: 772 IRYYLQMLFPFAPHLAEELWHWF 794
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus thermophilus}
SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Length = 500
Score = 56.5 bits (137), Expect = 3e-08
Identities = 43/237 (18%), Positives = 74/237 (31%), Gaps = 70/237 (29%)
Query: 799 RNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKL 858
R++ + GF++ G KMSK++GNV+ + +
Sbjct: 282 RHLNVGGFLLGPDGRKMSKTLGNVVDPFALLE---------------------------- 313
Query: 859 PAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSES---- 914
YG D LR+++ +P G++ S + + + L LG L + +
Sbjct: 314 -KYGRDALRYYLLRE------IPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFR 366
Query: 915 --TGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFV--VNELSAFYFT--- 967
G I V L + L E ++ A + +V +N Y
Sbjct: 367 FAEGRIPEPVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNR----YINEKK 422
Query: 968 ---LVKDRLYCDSINGEARLSG-LHTLHNIFHVLLRTVA----PIMPHLAEEVYSHL 1016
L K L+ + LR + P MP E+ L
Sbjct: 423 PWELFKK--------EPEEARAVLYRVVEG----LRIASILLTPAMPDKMAELRRAL 467
Score = 52.6 bits (127), Expect = 6e-07
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 76
Y N PH+GHA ++ D R + L G R ++ G D HG + A
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAA 60
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA
ligase metrs, methionine, translation, ATP-binding; HET:
ME8; 2.00A {Leishmania major}
Length = 564
Score = 53.1 bits (128), Expect = 5e-07
Identities = 41/247 (16%), Positives = 71/247 (28%), Gaps = 83/247 (33%)
Query: 797 PFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAK 856
+ HG+ + K+SKS+GN + +
Sbjct: 323 LPERLVSHGWWTKD-HKKISKSLGNAFDPVEKAK-------------------------- 355
Query: 857 KLPAYGVDVLRWWVAAHASKDPTVPIGK----------NILNSS-QDD----VQKIRSSL 901
+G+D L++++ LN D V + +
Sbjct: 356 ---EFGIDALKYFLMRE------SNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPK 406
Query: 902 RYLLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFV--VN 959
+ G+ +E + D ++ L T+D Y A + + + +N
Sbjct: 407 INVNGMWPEPAEYSE-----SDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLN 461
Query: 960 ELSAFYFT------LVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVA----PIMPHLA 1009
Y T LVK ARL L+ L R P+MP A
Sbjct: 462 A----YVTENAPWKLVKM--------DTARLG--TVLYVTMEGL-RICTMFLQPVMPQKA 506
Query: 1010 EEVYSHL 1016
+E+ L
Sbjct: 507 KEIMDAL 513
Score = 51.1 bits (123), Expect = 2e-06
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 76
Y N +PHIGH + ++ D+ R + ++G+ V + G D HG + A
Sbjct: 36 YVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAA 83
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 52.6 bits (127), Expect = 6e-07
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 76
Y N PH+GHA I D R L+ V ++ G D HGL I+ KA
Sbjct: 15 YVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKA 62
Score = 48.0 bits (115), Expect = 2e-05
Identities = 47/237 (19%), Positives = 84/237 (35%), Gaps = 70/237 (29%)
Query: 799 RNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKL 858
+ VF HG+ E G KMSK++GNV + +++ Q
Sbjct: 281 KKVFAHGWWTVE-GKKMSKTLGNV-----------------------VDPYEVVQ----- 311
Query: 859 PAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSLRYLLGVLHNHSES---- 914
YG+D +R+++ VP G++ S + + +I L +G L++ +
Sbjct: 312 -EYGLDEVRYFLLRE------VPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHK 364
Query: 915 --TGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFV--VNELSAFYFT--- 967
G +S D K E + + + +A +L F +N+ Y
Sbjct: 365 FLGGEVSGARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNK----YVDEKQ 420
Query: 968 ---LVKDRLYCDSINGEARLSG-LHTLHNIFHVLLRTVA----PIMPHLAEEVYSHL 1016
L K+ + L L+ L + L + PI P+ +E L
Sbjct: 421 PWALNKE-------RKKEELQKVLYALVDG----LFVLTHLLYPITPNKMKEALQML 466
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 52.3 bits (126), Expect = 7e-07
Identities = 21/48 (43%), Positives = 23/48 (47%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 76
Y NG PHIGHA I D R L G V Y+ G D HG + A
Sbjct: 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETA 69
Score = 52.3 bits (126), Expect = 8e-07
Identities = 38/248 (15%), Positives = 83/248 (33%), Gaps = 84/248 (33%)
Query: 799 RNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKL 858
+ +F HG++++ G KMSKS+GNV+ ++
Sbjct: 296 KRIFAHGWLLNR-GEKMSKSIGNVVDPVNLVD---------------------------- 326
Query: 859 PAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSL----------------R 902
+G+D +R+++ ++ VP G++ + + ++ + L +
Sbjct: 327 -TFGLDQVRYFLL----RE--VPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAK 379
Query: 903 YLLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFV--VNE 960
L + + E T D +L + + A + + + N
Sbjct: 380 NLGAAVPDPGEFTD-----EDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANR 434
Query: 961 LSAFYFT------LVKDRLYCDSINGEARLSGLHTLHNIFHVL--LRTVA----PIMPHL 1008
YF+ L K D+ + R + ++ L +R + P+MP
Sbjct: 435 ----YFSAQEPWVLRKS----DAAEDQQRFRTV-----LYTTLEVVRIASLLLQPVMPES 481
Query: 1009 AEEVYSHL 1016
++ L
Sbjct: 482 TAKLLDLL 489
Score = 29.9 bits (68), Expect = 5.7
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 17/46 (36%)
Query: 1188 EGVNFVPESAKKSLRDQIAQRPYWCISRQRV-WGVPIP-----VFY 1227
E V+FV L+D ISR WGVP+P V Y
Sbjct: 203 EIVSFV----SGGLKDL-------SISRTTFDWGVPVPDHPDHVMY 237
Score = 29.9 bits (68), Expect = 6.8
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 17/46 (36%)
Query: 658 EEVNFVPESAKKTLRDQIAQRPYWCISRQRV-WGVPIP-----VFY 697
E V+FV L+D ISR WGVP+P V Y
Sbjct: 203 EIVSFV----SGGLKDL-------SISRTTFDWGVPVPDHPDHVMY 237
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase,
class IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 51.9 bits (125), Expect = 9e-07
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 29 YANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKA 76
Y NG PHIGHA I D R L G V+++ G D HG+ + A
Sbjct: 35 YPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSA 82
Score = 50.3 bits (121), Expect = 4e-06
Identities = 48/248 (19%), Positives = 79/248 (31%), Gaps = 88/248 (35%)
Query: 799 RNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKL 858
+ VF HGF+ + G KMSKSVGNVI ++ +
Sbjct: 307 KRVFAHGFLFNR-GEKMSKSVGNVIDPFELVE---------------------------- 337
Query: 859 PAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSL----------------R 902
YG+D LR+++ ++ VP G++ S + V + + L +
Sbjct: 338 -RYGLDQLRYFLM----RE--VPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAK 390
Query: 903 YLLGVLHNHSESTGSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFV--VNE 960
G + + D +L + T + A + V N
Sbjct: 391 NCEGKVPQPGAFSE-----ADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANR 445
Query: 961 LSAFYFT------LVKDRLYCDSINGEARLSGLHTLHNIFHVL--LRTVA----PIMPHL 1008
YF L K AR+ + ++ LR V P +P
Sbjct: 446 ----YFAGQEPWALRKT--------DPARMGTV-----LYVTAEVLRRVGIMVQPFIPQS 488
Query: 1009 AEEVYSHL 1016
AE++ L
Sbjct: 489 AEKLLDIL 496
Score = 30.3 bits (69), Expect = 5.1
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 17/46 (36%)
Query: 1188 EGVNFVPESAKKSLRDQIAQRPYWCISRQRV-WGVPIP-----VFY 1227
E V+FV K L+D ISR WG+P+P V Y
Sbjct: 215 EIVSFV----KSGLKDL-------SISRTTFDWGIPVPGDEKHVMY 249
Score = 29.9 bits (68), Expect = 6.1
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 17/46 (36%)
Query: 658 EEVNFVPESAKKTLRDQIAQRPYWCISRQRV-WGVPIP-----VFY 697
E V+FV K L+D ISR WG+P+P V Y
Sbjct: 215 EIVSFV----KSGLKDL-------SISRTTFDWGIPVPGDEKHVMY 249
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 40.7 bits (96), Expect = 0.002
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 789 SVALKHTAPFRNVFLH-GFV-VDEKGAKMSKSVGNVISAHDI 828
+ ++ F ++H G + D G KMSKS GN++ +
Sbjct: 266 AESVTGERRFARHYVHTGMIGWD--GHKMSKSRGNLVLVSQL 305
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 40.2 bits (95), Expect = 0.004
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 794 HTAPFRNVFLH-GFV-VDEKGAKMSKSVGNVISAHDITQ 830
H + N ++H G V VD KMSKS+GN + D+ +
Sbjct: 246 HDGQYVNYWMHSGMVMVD--REKMSKSLGNFFTVRDVLK 282
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 39.4 bits (93), Expect = 0.007
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 794 HTAPFRNVFLH-GFV-VDEKGAKMSKSVGNVISAHDITQ 830
PF +++H G + ++ KMSKS+GN+IS + +
Sbjct: 249 EEKPFVKLWMHAGLLEIN--KEKMSKSLGNIISIREALK 285
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia
coli} PDB: 2ajh_A 2aji_A
Length = 196
Score = 37.9 bits (89), Expect = 0.009
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 270 IHPINKEQRDLKLLP---AGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQG 326
+HP+ E+ +P A FV GTG V P H Q D+ A + + +I
Sbjct: 93 VHPLTGEE-----IPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAAD 147
Query: 327 KYSPD 331
PD
Sbjct: 148 GSEPD 152
Score = 37.9 bits (89), Expect = 0.009
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 527 IHPINKEQRDLKLLP---AGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQG 583
+HP+ E+ +P A FV GTG V P H Q D+ A + + +I
Sbjct: 93 VHPLTGEE-----IPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAAD 147
Query: 584 KYSPD 588
PD
Sbjct: 148 GSEPD 152
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 37.6 bits (88), Expect = 0.027
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 797 PFRNVFLH-GFV-VDEKGAKMSKSVGNVISAHDI 828
+ +VF+H F+ +D KMSKS GN I+ D+
Sbjct: 282 KWCDVFVHGEFLIMD--YNKMSKSRGNFITVKDL 313
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.028
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 314 EKIPVLNLITNQGKYSPDAGPGLEGLN 340
EK + L + Y+ D+ P L +
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL-AIK 43
Score = 36.1 bits (82), Expect = 0.028
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 571 EKIPVLNLITNQGKYSPDAGPGLEGLN 597
EK + L + Y+ D+ P L +
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL-AIK 43
Score = 34.5 bits (78), Expect = 0.096
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 7/27 (25%)
Query: 1101 KVYHHLNLITNQGKYSPDAGPGLEGLN 1127
K+ L L Y+ D+ P L +
Sbjct: 24 KLQASLKL------YADDSAPAL-AIK 43
Score = 31.1 bits (69), Expect = 1.1
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 142 KQDYIYR---DLKPVYWSPSSRTALA-ESELE 169
KQ + + LK ++ S ALA ++ +E
Sbjct: 19 KQA-LKKLQASLKL--YADDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 2.0
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 10/37 (27%)
Query: 73 ELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEFE 109
LK + + KL + D A A+ KA E
Sbjct: 21 ALKKLQASLKLYAD-D---SAPALAI------KATME 47
Score = 28.8 bits (63), Expect = 7.3
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 19/44 (43%)
Query: 273 INKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKI 316
+ K Q LKL + S APA LA+ +
Sbjct: 22 LKKLQASLKL----YADDS--------APA-------LAIKATM 46
Score = 28.8 bits (63), Expect = 7.3
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 19/44 (43%)
Query: 530 INKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKI 573
+ K Q LKL + S APA LA+ +
Sbjct: 22 LKKLQASLKL----YADDS--------APA-------LAIKATM 46
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase,
aminoacyl-tRNA synthetase, ATP-binding, nucleotide-
protein biosynthesis; 1.77A {Aquifex aeolicus} PDB:
3pz0_A 3pz5_A
Length = 219
Score = 34.9 bits (81), Expect = 0.092
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 14/80 (17%)
Query: 270 IHPINKEQRDLKLLP---AGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQG 326
+P N E+ +P A +V GTG + C PAH Q D+ A +P+ ++
Sbjct: 114 TNPANGEK-----IPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVV---- 164
Query: 327 KYSPDAGPGLEGLNILGDGK 346
P+ E G G
Sbjct: 165 --KPEGAWDFEKGAYEGKGT 182
Score = 34.9 bits (81), Expect = 0.092
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 14/80 (17%)
Query: 527 IHPINKEQRDLKLLP---AGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQG 583
+P N E+ +P A +V GTG + C PAH Q D+ A +P+ ++
Sbjct: 114 TNPANGEK-----IPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVV---- 164
Query: 584 KYSPDAGPGLEGLNILGDGK 603
P+ E G G
Sbjct: 165 --KPEGAWDFEKGAYEGKGT 182
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus,
translation, amino acid, structural genomics; 1.70A
{Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Length = 147
Score = 33.6 bits (78), Expect = 0.13
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 287 FVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPG-LEGL 339
V GTG + PAH D+ + + +++I +G+ + P L GL
Sbjct: 68 AVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGL 121
Score = 33.6 bits (78), Expect = 0.13
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 544 FVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPG-LEGL 596
V GTG + PAH D+ + + +++I +G+ + P L GL
Sbjct: 68 AVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGL 121
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET:
SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A*
3sht_A 3shv_A*
Length = 199
Score = 30.1 bits (67), Expect = 3.3
Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 20/131 (15%)
Query: 593 LEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPE 652
L+G +I D + H++ L T N V+ S W +
Sbjct: 34 LKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIAR----GCWVL---SYDWVLW------- 79
Query: 653 ALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYDGDTIIVN---EANI 709
LE +++ E + A +F D + V+ +
Sbjct: 80 ---SLELGHWISEEPFELSHHFPAAPLCRSECHLSAGPYRGTLFADQPVMFVSPASSPPV 136
Query: 710 KHFCTLIDEHG 720
C L+ G
Sbjct: 137 AKLCELVHLCG 147
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 30.2 bits (69), Expect = 4.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 812 GAKMSKSVGNVI 823
G KMSKS GN+I
Sbjct: 203 GRKMSKSYGNII 214
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum
sativum} SCOP: d.58.6.1
Length = 182
Score = 29.6 bits (67), Expect = 4.5
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 358 LWTENYQHSYPYDWRTKKPVILKASQQWFIDTER----IKPEALVCKTVGNILGR 408
+ ++ H + YD+ T + + + + + ER IKP+ + + I+ R
Sbjct: 1 MSYYHHHHHHDYDYPTTENLYFQGAMDPEAELERTFIAIKPDGVQRGLISEIISR 55
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 29.8 bits (68), Expect = 5.7
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 812 GAKMSKSVGNVISAHDITQGAKKL 835
GAKMSKS N I DI K L
Sbjct: 190 GAKMSKSYQNTI---DIFSSEKTL 210
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA;
HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Length = 437
Score = 29.3 bits (66), Expect = 8.9
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 140 LYKQDYIYRDLKP 152
+++ Y++RD+KP
Sbjct: 191 VHQLHYVHRDIKP 203
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 29.3 bits (66), Expect = 9.8
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 140 LYKQDYIYRDLKP 152
++ +I+RD+KP
Sbjct: 184 IHSMGFIHRDVKP 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.428
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 20,128,297
Number of extensions: 1242544
Number of successful extensions: 2839
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2706
Number of HSP's successfully gapped: 118
Length of query: 1281
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1176
Effective length of database: 3,770,088
Effective search space: 4433623488
Effective search space used: 4433623488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.0 bits)