RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17125
(1281 letters)
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 149 bits (376), Expect = 7e-39
Identities = 102/287 (35%), Positives = 143/287 (49%), Gaps = 43/287 (14%)
Query: 619 NYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQIAQR 678
+ YP+DWRTKKPVI +A+ QWF +++ + L +E NF K + + + R
Sbjct: 195 EAEIEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDR 254
Query: 679 PYWCISRQRVWGVPIPVFYDGDT-IIVNEANIKHFCTLIDEHGPDFWWSLSVEQ-----L 732
W ISRQRVWGVP+PVFY + II+ + + H L EHG + W+ +
Sbjct: 255 GEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGF 314
Query: 733 LNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDK-----PAHVYMEGMDQINGWFMSSLL 787
+ N TK DI+D+WFDSG S VL+ + PA +Y+EG DQ GWF SS+
Sbjct: 315 THPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSIT 374
Query: 788 TSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVIS 847
TSVA + +P++ + HGFV+D +G KMSKS+GNVI +
Sbjct: 375 TSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQV------------------- 415
Query: 848 AHDITQGAKKLPAYGVDVLRWWVA-AHASKDPTVPIGKNILNSSQDD 893
+ G D+ R WV+ D V I IL + DD
Sbjct: 416 ----------VKQKGADIARLWVSSTDYLAD--VRISDEILKQTSDD 450
Score = 121 bits (303), Expect = 2e-29
Identities = 82/189 (43%), Positives = 104/189 (55%), Gaps = 3/189 (1%)
Query: 5 SELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 64
+ Y E G FILHDGPPYANG H+GHA+NKILKD +R +QG YVPG
Sbjct: 34 EDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPG 93
Query: 65 WDCHGLPIELKAITSKDK--LLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCY 122
WD HGLPIE +S + R+K K FALE I QK +F GV D+ ++ Y
Sbjct: 94 WDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDF-NDPY 152
Query: 123 HTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIYLK 182
T EY Q+ F + + IY+ KPVYWSPSS ++LAE+E+EY D +K +
Sbjct: 153 ITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYPHDWRTKKPVIF 212
Query: 183 IKLNQVPAH 191
Q A
Sbjct: 213 RATPQWFAS 221
Score = 60.4 bits (145), Expect = 7e-10
Identities = 44/113 (38%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 1149 NYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQIAQR 1208
+ YP+DWRTKKPVI +A+ QWF +++ + L +E NF K + + + R
Sbjct: 195 EAEIEYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDR 254
Query: 1209 PYWCISRQRVWGVPIPVFYDGDT-IIVNEANIKHFCTLIDEHGPDFWWSLPVE 1260
W ISRQRVWGVP+PVFY + II+ + + H L EHG + W+ +
Sbjct: 255 GEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAK 307
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 142 bits (358), Expect = 1e-36
Identities = 74/291 (25%), Positives = 115/291 (39%), Gaps = 46/291 (15%)
Query: 619 NYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPES-AKKTLRDQIAQ 677
YP+ WR P++ A++ WFI K E + +E+++VP + + +
Sbjct: 192 EVALGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKN 251
Query: 678 RPYWCISRQRVWGVPIPVFYDGDT----IIVNEANIKHFCTLIDEHGPDFWWSLSVEQLL 733
W +SR R WG P+P++ I + +K T D V+Q+
Sbjct: 252 LVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRP-YVDQVE 310
Query: 734 NTSDVNSNVTKSNDILDIWFDSGISWSHVLK-----------DKPAHVYMEGMDQINGWF 782
+ + ++D+W+DSG L PA EG+DQ GWF
Sbjct: 311 LACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWF 370
Query: 783 MSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSV 842
S V L + F+NV HG ++DEKG KMSKS GNV+ DI +
Sbjct: 371 NSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIR------------ 418
Query: 843 GNVISAHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDD 893
+G D LRW++ A + G N++ + D
Sbjct: 419 -----------------KFGADALRWYIYVSAPPEADRRFGPNLVRETVRD 452
Score = 119 bits (298), Expect = 9e-29
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 8/158 (5%)
Query: 5 SELYSWQREALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPG 64
+++ E G P + +++GPP ANG PH+GHA + KD+ R ++G G
Sbjct: 24 EKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAG 83
Query: 65 WDCHGLPIELKAIT-------SKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADW 117
WD HGLP+EL+ + + + + +A E D
Sbjct: 84 WDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDL 143
Query: 118 EHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYW 155
+ Y T + Y+++ NL+ + +YRD K V +
Sbjct: 144 -EDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPY 180
Score = 54.2 bits (129), Expect = 6e-08
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Query: 1149 NYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPES-AKKSLRDQIAQ 1207
YP+ WR P++ A++ WFI K E + + +++VP + + +
Sbjct: 192 EVALGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKN 251
Query: 1208 RPYWCISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWS 1256
W +SR R WG P+P++ I F L
Sbjct: 252 LVDWALSRNRYWGTPLPIWVCQACGKEEA--IGSFQELKARATKPLPEP 298
Score = 31.1 bits (69), Expect = 0.99
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 362 NYQHSYPYDWRTKKPVILKASQQWFIDTERIKPE 395
YP+ WR P++ A++ WFI K E
Sbjct: 192 EVALGYPHCWRCSTPLMYYATESWFIKNTLFKDE 225
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 138 bits (348), Expect = 5e-35
Identities = 48/219 (21%), Positives = 79/219 (36%), Gaps = 12/219 (5%)
Query: 12 REALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLP 71
++ G+ + + PY +G H+GH N + D+ R +QG V + GWD GLP
Sbjct: 26 KDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLP 85
Query: 72 IELKAITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVK 131
E A+ K++ I K G+L DW+ T + EY +
Sbjct: 86 AENAAL----------KFGVHPKDWTYANIRQAKESLRLMGILYDWDRE-VTTCEPEYYR 134
Query: 132 NQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKP-DHVSKSIYLKIKLNQVPA 190
F ++++ YR V W P +T LA ++ + K +L Q
Sbjct: 135 WNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYL 194
Query: 191 HLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVAS 229
+ A L + A+ L + S
Sbjct: 195 RITAYAERLLKDLEGLNWPEKVKAMQRAWIGRLRDWLIS 233
Score = 55.8 bits (133), Expect = 3e-08
Identities = 51/314 (16%), Positives = 84/314 (26%), Gaps = 66/314 (21%)
Query: 616 WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTLRDQI 675
PV + +QW++ E L E PE K R I
Sbjct: 166 LANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYA-ERLLKDLEGLNWPEKVKAMQRAWI 224
Query: 676 AQRPYWCISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNT 735
+ W ISRQR WG PIP+ + +V + L D + L
Sbjct: 225 GRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAH 284
Query: 736 SD--------VNSNVTKSNDILDIWF---------------DSGISWSHVLKDKPAHVYM 772
+ + D +D +F P Y+
Sbjct: 285 PEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYI 344
Query: 773 EGMDQINGWFMSSLLTSVALKHT------APFRNVFLHGFVVDEKGAKMSKSVGNVISAH 826
G++ + S + L PF+ +F G V+ + G+V+
Sbjct: 345 GGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLP 404
Query: 827 DITQGAKKLPAYE------------------------------KSVGNVISAHDITQGAK 856
+ T+ ++P KS GN + +
Sbjct: 405 EPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVK--- 461
Query: 857 KLPAYGVDVLRWWV 870
G D+ R +
Sbjct: 462 ---EQGADIARITI 472
Score = 51.9 bits (123), Expect = 4e-07
Identities = 26/240 (10%), Positives = 56/240 (23%), Gaps = 14/240 (5%)
Query: 597 NILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALAC 656
+ + + P + P ++ I + P
Sbjct: 226 RLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHP 285
Query: 657 LEEVNFVPESAKKTLRD-------QIAQRPYWCISRQRVWGVPIPVFYDGDTIIVNEANI 709
P+ RD + Y + +P + V++
Sbjct: 286 EFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIG 345
Query: 710 KHFCTLIDEHGPDFWWS-LSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDKPA 768
++ F+ L ++ + + +L + + P
Sbjct: 346 GVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPE 405
Query: 769 HVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDI 828
+I S L+ ++ G + K A MSKS GN +
Sbjct: 406 PT------RIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPF 459
Score = 34.6 bits (78), Expect = 0.087
Identities = 26/122 (21%), Positives = 37/122 (30%), Gaps = 1/122 (0%)
Query: 1146 WTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKKSLRDQI 1205
PV + +QW++ E L PE K R I
Sbjct: 166 LANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYA-ERLLKDLEGLNWPEKVKAMQRAWI 224
Query: 1206 AQRPYWCISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLPVEQLLNT 1265
+ W ISRQR WG PIP+ + +V + L D + L
Sbjct: 225 GRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAH 284
Query: 1266 SD 1267
+
Sbjct: 285 PE 286
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 121 bits (303), Expect = 1e-29
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 7/165 (4%)
Query: 16 NGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELK 75
+GKP F++ PP G+ H+GHA++ L+D +R ++G ++PG D G+ ++
Sbjct: 31 SGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVV 90
Query: 76 AITS------KDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEY 129
L ++ + E+ T + + G ADW + D++
Sbjct: 91 VERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFT-MDEKR 149
Query: 130 VKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDH 174
+ F Y + YR + V W P T L++ E+E
Sbjct: 150 SRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETCSRC 194
Score = 118 bits (296), Expect = 1e-28
Identities = 63/257 (24%), Positives = 88/257 (34%), Gaps = 36/257 (14%)
Query: 621 QHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLE--EVNFVPESAKKTLRDQIAQR 678
R P+ QW++ + E L L ++ FVPE KK D +
Sbjct: 185 DLEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENV 244
Query: 679 PYWCISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDV 738
W ISRQ WG IP +Y D VN + + P + +L DV
Sbjct: 245 KDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYL-----EDPTSCEACGSPRLKRDEDV 299
Query: 739 NSNVTKSNDILDIWFDSGISWSHVLKDKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPF 798
S + P V + G D + W ++ PF
Sbjct: 300 FDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPF 359
Query: 799 RNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKL 858
+ V LHG V+DEKG KMSKS GNVI ++ +
Sbjct: 360 KTVLLHGLVLDEKGQKMSKSKGNVIDPLEM-----------------------------V 390
Query: 859 PAYGVDVLRWWVAAHAS 875
YG D LR+ + A+
Sbjct: 391 ERYGADALRFALIYLAT 407
Score = 41.8 bits (97), Expect = 4e-04
Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 1151 QHSYPYDWRTKKPVILKASQQWFIDTERIKPEALACLEG--VNFVPESAKKSLRDQIAQR 1208
R P+ QW++ + E L L + FVPE KK D +
Sbjct: 185 DLEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENV 244
Query: 1209 PYWCISRQRVWGVPIPVFYDGDTIIVNEANIKHFC 1243
W ISRQ WG IP +Y D VN + +
Sbjct: 245 KDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYL 279
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 102 bits (254), Expect = 9e-24
Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 13/158 (8%)
Query: 21 FILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSK 80
++ PYANG+ H+GH + I D+ +R ++G V+++ D HG PI LKA
Sbjct: 4 ILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLG 63
Query: 81 DKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNL 140
+ E + +F + + + N + T +E + + L
Sbjct: 64 ----------ITPEQMIGEMSQEHQTDFAGFNI--SY-DNYHSTHSEENRQLSELIYSRL 110
Query: 141 YKQDYIYRDLKPVYWSPSSRTALAESELEYKPDHVSKS 178
+ +I + P L + + V +
Sbjct: 111 KENGFIKNRTISQLYDPEKGMFLPDRFVVSGATPVMRD 148
Score = 59.9 bits (144), Expect = 8e-10
Identities = 40/291 (13%), Positives = 77/291 (26%), Gaps = 67/291 (23%)
Query: 613 DVLWTENYQHSYPYDW-RTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKKTL 671
L+ P + + +++ S+ +F D A + A K
Sbjct: 122 SQLYDPEKGMFLPDRFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQ 181
Query: 672 RDQIAQRPYWCISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSVEQ 731
+ W ISR + + W +
Sbjct: 182 EWFESGLQQWDISRDAPY-FGFEIPNA------------------PGKYFYVWLDAPIGY 222
Query: 732 LLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDKPAHVYMEGMDQINGWFMSSLLTSVA 791
+ + ++ S + W + G D + +
Sbjct: 223 MGSFKNLCDKRGDSVSFDEYWKKD---------STAELYHFIGKDIVYFHSLFWPAMLEG 273
Query: 792 LKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDI 851
N+F+HG+V GAKMSKS G I A
Sbjct: 274 SNFR-KPSNLFVHGYVTVN-GAKMSKSRGTFIKASTW----------------------- 308
Query: 852 TQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDD-VQKIRSSL 901
L + D LR++ A + + ++ + +D VQ++ + +
Sbjct: 309 ------LNHFDADSLRYYYTAK------LSSRIDDIDLNLEDFVQRVNADI 347
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 194
Score = 82.7 bits (203), Expect = 2e-18
Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 10/199 (5%)
Query: 173 DHVSKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG 232
D S SIY+ + + D +IWTTTPW++P+N I +P L+Y +V G
Sbjct: 2 DKRSASIYVAFNVKDDKGVVDA---DAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNG 58
Query: 233 ANVIVAKCLVESLKWTFQT---DIEVVCDFPGQYLQDITYIHPINKEQRDLKLLPAGFVS 289
I+A+ L +++ I++ ++ G+ L+ + HP + + V+
Sbjct: 59 EKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLVIN--GDHVT 116
Query: 290 SSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQV 349
+ GTG VH AP HG+DD+++ ++PV++ I ++G ++ + G EG+ K
Sbjct: 117 TDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQ-FEGMFYDKANKAVT 175
Query: 350 LHLVEPDVLW-TENYQHSY 367
L E L + HSY
Sbjct: 176 DLLTEKGALLKLDFITHSY 194
Score = 81.2 bits (199), Expect = 6e-18
Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 6/197 (3%)
Query: 430 DHISKSIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKG 489
D S SIY+ + + D +IWTTTPW++P+N I +P L+Y +V G
Sbjct: 2 DKRSASIYVAFNVKDDKGVVDA---DAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNG 58
Query: 490 ANVIVAKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINKEQRDLKLLPAG-FVSSS 548
I+A+ L + + D + +++ ++ + L+ G V++
Sbjct: 59 EKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTD 118
Query: 549 KGTGLVHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLH 608
GTG VH AP HG+DD+++ ++PV++ I ++G ++ + G EG+ K
Sbjct: 119 AGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQ-FEGMFYDKANKAVTDL 177
Query: 609 LVEPDVLW-TENYQHSY 624
L E L + HSY
Sbjct: 178 LTEKGALLKLDFITHSY 194
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 84.3 bits (207), Expect = 9e-18
Identities = 32/184 (17%), Positives = 53/184 (28%), Gaps = 15/184 (8%)
Query: 27 PPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSP 86
Y N PH+GHA ++ D R + L G R ++ G D HG + A
Sbjct: 11 IYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ--------- 61
Query: 87 LDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNL-YKQDY 145
A ++ F+ L ++ + +E K + Y+
Sbjct: 62 -----AAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGD 116
Query: 146 IYRDLKPVYWSPSSRTALAESELEYKPDHVSKSIYLKIKLNQVPAHLLEGATDLHALIWT 205
IY + S E EL + + K + + L I
Sbjct: 117 IYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQE 176
Query: 206 TTPW 209
Sbjct: 177 NPDL 180
Score = 58.1 bits (139), Expect = 3e-09
Identities = 24/171 (14%), Positives = 48/171 (28%), Gaps = 29/171 (16%)
Query: 705 NEANIKHFCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLK 764
NE + D + L + + + +L+ +
Sbjct: 188 NEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYR 247
Query: 765 DKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVIS 824
H + I T + +R++ + GF++ G KMSK++GNV+
Sbjct: 248 TFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVD 307
Query: 825 AHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWWVAAHAS 875
+ + YG D LR+++
Sbjct: 308 PFALLEK-----------------------------YGRDALRYYLLREIP 329
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 82.4 bits (202), Expect = 4e-17
Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 14/142 (9%)
Query: 21 FILHDGPPYANGTPHIGHAVNK-ILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITS 79
+++ PYANG H GH + DI +R L+G+ V ++ G D HG PI +A+
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL-- 61
Query: 80 KDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQFYN 139
K+ ++ + ++ T + K F
Sbjct: 62 -----------KEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLK 110
Query: 140 LYKQDYIYRDLKPVYWSPSSRT 161
Y+ ++ + + + +
Sbjct: 111 AYENGHLVKKVTKQAYCEHDKM 132
Score = 68.1 bits (165), Expect = 2e-12
Identities = 36/294 (12%), Positives = 77/294 (26%), Gaps = 56/294 (19%)
Query: 611 EPDVLWTENYQHSYPYDW-RTKKPVILKASQQWFIDTERIKPEALACLEEVNFVPESAKK 669
+ E+ + P + +P+ + S ++I + +E+ + P
Sbjct: 121 VTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNM 180
Query: 670 TLRDQIAQRPYWCISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWWSLSV 729
L I+R WG+P+P+ + V + ++
Sbjct: 181 VLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKV-------LYVWFEAPIGYISITIEH 233
Query: 730 EQLLNTSDVNSNVTKS--NDILDIWFDSGISWSHVLKDKPAHVYMEGMDQINGWFMSSLL 787
+ + + + I F + PA + G +
Sbjct: 234 FKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEA---- 289
Query: 788 TSVALKHTAPFRNVFLHGFVVDEKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVIS 847
++ + ++ E G K S S I H+
Sbjct: 290 ------EWNLPYDIPANEYLTLE-GKKFSTSRNWAIWVHEF------------------- 323
Query: 848 AHDITQGAKKLPAYGVDVLRWWVAAHASKDPTVPIGKNILNSSQDDVQKIRSSL 901
L + D LR+++ P ++ S D +I L
Sbjct: 324 ----------LDVFPADYLRYYLTTIM------PETRDSDFSFSDFKVRINEEL 361
Score = 33.4 bits (75), Expect = 0.16
Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 1/116 (0%)
Query: 1141 EPDVLWTENYQHSYPYDW-RTKKPVILKASQQWFIDTERIKPEALACLEGVNFVPESAKK 1199
+ E+ + P + +P+ + S ++I + +E + P
Sbjct: 121 VTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNM 180
Query: 1200 SLRDQIAQRPYWCISRQRVWGVPIPVFYDGDTIIVNEANIKHFCTLIDEHGPDFWW 1255
L I+R WG+P+P+ + V + I F
Sbjct: 181 VLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKR 236
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus
thermophilus [TaxId: 274]}
Length = 179
Score = 73.1 bits (178), Expect = 3e-15
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 11/178 (6%)
Query: 178 SIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIV 237
S+Y++ L + LE LIWTTTPW+LP N A +P Y+ V +I+
Sbjct: 2 SVYVRFPLKEPKKLGLE---KASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALIL 58
Query: 238 AKCLVESLKWTFQTDIEVVCDFPGQYLQDITYIHPINK-EQRDLKLLPAGFVSSSKGTGL 296
+ L L V+ FPG+ L+ + Y P + ++ ++ A +VS GTG+
Sbjct: 59 EEGLGRKLLGEGT---PVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGI 115
Query: 297 VHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVE 354
VH APA G +D A +P+L + +GK + +GL + +L +
Sbjct: 116 VHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEP---FKGLYFR-EANRAILRDLR 169
Score = 72.7 bits (177), Expect = 4e-15
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 11/178 (6%)
Query: 435 SIYLKIKLNQVPAHLLEGATDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIV 494
S+Y++ L + LE LIWTTTPW+LP N A +P Y+ V +I+
Sbjct: 2 SVYVRFPLKEPKKLGLE---KASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALIL 58
Query: 495 AKCLVENLKWTFQTDIDVVCDFPGQYLQDITYIHPINK-EQRDLKLLPAGFVSSSKGTGL 553
+ L L V+ FPG+ L+ + Y P + ++ ++ A +VS GTG+
Sbjct: 59 EEGLGRKLLGEGTP---VLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGI 115
Query: 554 VHCAPAHGQDDFLLALAEKIPVLNLITNQGKYSPDAGPGLEGLNILGDGKDQVLHLVE 611
VH APA G +D A +P+L + +GK + +GL + +L +
Sbjct: 116 VHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEP---FKGLYFR-EANRAILRDLR 169
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 64.6 bits (156), Expect = 3e-12
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 2/134 (1%)
Query: 454 TDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVV 513
++ ++TT P +L F+ P ++ VE K + +
Sbjct: 14 KEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAE 73
Query: 514 CDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKI 573
++P + + A +V GTG + PAH Q D+ A +
Sbjct: 74 GREKTGVFLGAYALNPATG--ERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL 131
Query: 574 PVLNLITNQGKYSP 587
P+ +I G+ P
Sbjct: 132 PIKKVIERPGEPLP 145
Score = 64.6 bits (156), Expect = 3e-12
Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 2/134 (1%)
Query: 197 TDLHALIWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIEVV 256
++ ++TT P +L F+ P ++ VE+ K + + +
Sbjct: 14 KEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAE 73
Query: 257 CDFPGQYLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKI 316
++P + + A +V GTG + PAH Q D+ A +
Sbjct: 74 GREKTGVFLGAYALNPATG--ERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL 131
Query: 317 PVLNLITNQGKYSP 330
P+ +I G+ P
Sbjct: 132 PIKKVIERPGEPLP 145
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 273
Score = 63.9 bits (154), Expect = 2e-11
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 4/151 (2%)
Query: 896 KIRSSLRYLLGVLHNHSESTGSIS----RYVDVYMLKRLCEFQNTMDTLYGEFQYARASR 951
KIR++LR++LG +++ + T SI VD Y+L RL EF + Y F Y +
Sbjct: 3 KIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQ 62
Query: 952 VLLNFVVNELSAFYFTLVKDRLYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEE 1011
+ NF+ ELS FY KD LY + + R S L+ I + + +API+ H AEE
Sbjct: 63 EVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEE 122
Query: 1012 VYSHLPSRQGTFSSFCHFKVYLQYSGSIAKR 1042
V+SH P + ++ ++ +
Sbjct: 123 VWSHTPHVKEESVHLADMPKVVEVDQALLDK 153
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 46.7 bits (109), Expect = 1e-05
Identities = 32/241 (13%), Positives = 61/241 (25%), Gaps = 7/241 (2%)
Query: 592 GLEGLNILGDGKDQVLHLVEPDVLWTENYQHSYPYDWRTKKPVILKASQQWFIDTERIKP 651
G E +I V +V P ++ + F+ +
Sbjct: 54 GYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEV 113
Query: 652 EALACLEEVNFVPESAKKTLRDQIAQRPYWCISRQRVWGVPIPVFYDGDTIIVNEANIKH 711
E L ++ + E K+ + + ++ + + + N
Sbjct: 114 EKLGIEVDLLYASELYKRGEYSEEIR---LAFEKRDKIMEILNKYREIAKQPPLPENWWP 170
Query: 712 FCTLIDEHGPDFWWSLSVEQLLNTSDVNSNVTKSNDILDIWFDSGISWSHVLKDKPAHVY 771
EH + DI ++ V
Sbjct: 171 AMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVD 230
Query: 772 MEGMDQINGWFMSSLLTSVALKHTA---PFRNVFLHGFV-VDEKGAKMSKSVGNVISAHD 827
E + + SS T + ++ FV + + KMS S GNVI D
Sbjct: 231 FEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSD 290
Query: 828 I 828
+
Sbjct: 291 L 291
Score = 44.0 bits (102), Expect = 7e-05
Identities = 21/172 (12%), Positives = 54/172 (31%), Gaps = 11/172 (6%)
Query: 13 EALNGKPEFILHDGPPYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPI 72
K ++++ G +G H+G+ I + +G V ++ WD +
Sbjct: 12 RERGEKEKYVVESGI-TPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFR 70
Query: 73 ELKA-------ITSKDKLLSPLDIRKKAKNFALETINTQKAEFESWGVLADWEHN---CY 122
++ + D +++A + + E E G+ D +
Sbjct: 71 KVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYK 130
Query: 123 HTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYWSPSSRTALAESELEYKPDH 174
E ++ + + + YR++ P + E++ +
Sbjct: 131 RGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREA 182
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 39.5 bits (91), Expect = 0.002
Identities = 20/151 (13%), Positives = 47/151 (31%), Gaps = 38/151 (25%)
Query: 751 IWFDSGISWSHVLKDKPAHVYMEGMDQINGWFMSSLLTSVALKHTAPFR-NVFLHGFVVD 809
+ K H + G + + + N ++H +V
Sbjct: 202 RPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVM 261
Query: 810 EKGAKMSKSVGNVISAHDITQGAKKLPAYEKSVGNVISAHDITQGAKKLPAYGVDVLRWW 869
KMSKS+GN + D+ + Y + +R++
Sbjct: 262 VDREKMSKSLGNFFTVRDVLKY-----------------------------YDAETVRYF 292
Query: 870 VAAHASKDPTVPIGKNILNSSQDDVQKIRSS 900
+ + + LN S++++++ R++
Sbjct: 293 LMSGHYRSQ--------LNYSEENLKQARAA 315
Score = 36.1 bits (82), Expect = 0.023
Identities = 15/109 (13%), Positives = 32/109 (29%), Gaps = 2/109 (1%)
Query: 28 PYANGTPHIGHAVNKILKDITLRSNLLQGKRVHYVPGWDCHGLPIELKAITSKDKLLSPL 87
HIGH + D+ R G ++ YV I +A + + ++ +
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMV 89
Query: 88 DIRKKAKNFALETINTQKAEFESWGVLADWEHNCYHTFDKEYVKNQLCQ 136
D + + +N + + E ++ K
Sbjct: 90 DRMIAEMHKDFDALNILRPDMEPR--ATHHIAEIIELTEQLIAKGHAYV 136
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 143
Score = 32.9 bits (74), Expect = 0.11
Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 39/163 (23%)
Query: 460 IWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVENLKWTFQTDIDVVCDFPGQ 519
I T P ++ A+Q IA +P E + I + + + D
Sbjct: 18 IATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKD-------- 69
Query: 520 YLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLI 579
GTG + PAH D+ + + +++I
Sbjct: 70 -----------------------------FGTGALKVTPAHDPLDYEIGERHGLKPVSVI 100
Query: 580 TNQGKYSPDAGPG-LEGLNILGDGKDQVLHLVEPDVLW-TENY 620
+G+ + P L GL+ + V E L E+Y
Sbjct: 101 NLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 143
Score = 32.5 bits (73), Expect = 0.12
Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 39/163 (23%)
Query: 203 IWTTTPWSLPANQFIAFNPALEYSVASVKGANVIVAKCLVESLKWTFQTDIEVVCDFPGQ 262
I T P ++ A+Q IA +P E + I + + + +
Sbjct: 18 IATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKD-------- 69
Query: 263 YLQDITYIHPINKEQRDLKLLPAGFVSSSKGTGLVHCAPAHGQDDFLLALAEKIPVLNLI 322
GTG + PAH D+ + + +++I
Sbjct: 70 -----------------------------FGTGALKVTPAHDPLDYEIGERHGLKPVSVI 100
Query: 323 TNQGKYSPDAGPG-LEGLNILGDGKDQVLHLVEPDVLW-TENY 363
+G+ + P L GL+ + V E L E+Y
Sbjct: 101 NLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 143
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 31.7 bits (71), Expect = 0.24
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 3/101 (2%)
Query: 916 GSISRYVDVYMLKRLCEFQNTMDTLYGEFQYARASRVLLNFVVNELSAFYFTLVKDRLYC 975
G I V L + L E ++ A + +V
Sbjct: 22 GRIPEPVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEK---KPWEL 78
Query: 976 DSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSHL 1016
E + L+ + + + P MP E+ L
Sbjct: 79 FKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRAL 119
Score = 27.5 bits (60), Expect = 6.1
Identities = 9/61 (14%), Positives = 16/61 (26%)
Query: 1027 CHFKVYLQYSGSIAKRILYCDSINGEARLSGLHTLHNIFHVLLRTVAPIMPHLAEEVYSH 1086
V K+ E + L+ + + + P MP E+
Sbjct: 59 AMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRA 118
Query: 1087 L 1087
L
Sbjct: 119 L 119
>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 355
Score = 29.5 bits (65), Expect = 2.9
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 107 EFESWGVLADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRDLKPVYW 155
E + + H + LC +L+ I+RDLKP
Sbjct: 102 ELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNI 150
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 28.3 bits (63), Expect = 3.2
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 760 SHVLKDKPAHVYMEGMDQINGWFMSSLLTSVA-------LKHTAPFRNVFLHGFVVDEKG 812
+ D + I G ++ + + L+ P V L G V E
Sbjct: 65 KLLTADPKVEAILV---NIFGGIVNCAIIANGITKACRELELKVPLV-VRLEGTNVHEAQ 120
Query: 813 AKMSKSVGNVISAHDITQGAKK 834
++ S + SA D+ AKK
Sbjct: 121 NILTNSGLPITSAVDLEDAAKK 142
>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 298
Score = 28.3 bits (62), Expect = 6.4
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 107 EFESWGVLADWEHNCYHTFDKEYVKNQLCQFYN----LYKQDYIYRDLKP 152
EF + + + +K+ L Q + ++RDLKP
Sbjct: 81 EFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKP 130
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 204
Score = 27.6 bits (61), Expect = 8.2
Identities = 4/69 (5%), Positives = 15/69 (21%), Gaps = 7/69 (10%)
Query: 114 LADWEHNCYHTFDKEYVKNQLCQFYNLYKQDYIYRD---LKPVYWSPSSRTALAESELEY 170
N + ++ + + + PV+ + + S
Sbjct: 88 FTRLGANALALAEGDFC----FFIDEPNGELTVITESRGFSPVHVVQGKKAWMTNSLKLV 143
Query: 171 KPDHVSKSI 179
++
Sbjct: 144 TAAEGEGAL 152
>d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid
herpesvirus 4, MuHV-4 [TaxId: 33708]}
Length = 371
Score = 27.8 bits (61), Expect = 8.5
Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 16/117 (13%)
Query: 1027 CHFKVYLQYSGSIAKRILYCDSINGEARLSGLHTLHNIF---HVLLRTVAPIMPHLAEEV 1083
C++K + + ++ D ++ S ++ + F H + + H A ++
Sbjct: 253 CYYKYSVSPLPA-MDHLILADLAGLDSLTSPVYVMAAYFDSTHENPVRPSSKLYHCALQM 311
Query: 1084 YSHLPSRQGTFSSF------CHFKVYHHLNLITNQGKYSPDAGPGLEGLNILGEGKD 1134
SH G ++S N++ Q + +P + P L G++++ EG+
Sbjct: 312 TSH----DGVWTSTSSEQCPIRLVEGQSQNVL--QVRVAPTSMPNLVGVSLMLEGQQ 362
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.428
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,002,728
Number of extensions: 242091
Number of successful extensions: 636
Number of sequences better than 10.0: 1
Number of HSP's gapped: 608
Number of HSP's successfully gapped: 45
Length of query: 1281
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1185
Effective length of database: 1,089,516
Effective search space: 1291076460
Effective search space used: 1291076460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)