BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17126
(240 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|328699748|ref|XP_003241033.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Acyrthosiphon pisum]
Length = 221
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 95/155 (61%), Positives = 127/155 (81%)
Query: 2 AAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPG 61
++ +RLPP+PSIRD+IKLYKLRA+K+LSQNFL EPRL +IVR+AG+ EVCEVGPG
Sbjct: 3 VSRIIRLPPLPSIRDLIKLYKLRAMKELSQNFLMEPRLISRIVRSAGSFKDCEVCEVGPG 62
Query: 62 PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR 121
PG+ITRSI+ P+R+++IEKD RFTP L++LA++SP P+ GDVM+F ++ MF+ED
Sbjct: 63 PGNITRSIIQNMPSRVLIIEKDKRFTPSLELLAESSPVPLELIFGDVMNFNLEQMFNEDN 122
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+ +W + P I +IGNLPFNVSTPLII+W++AISE
Sbjct: 123 KMEWEDKCPQIHLIGNLPFNVSTPLIIRWLKAISE 157
>gi|291238518|ref|XP_002739171.1| PREDICTED: tfb1m protein-like [Saccoglossus kowalevskii]
Length = 259
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 89/152 (58%), Positives = 116/152 (76%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
LRLPP+P+I DII++Y LRA KQLSQNFL + LTDKIVR+AG++ G VCEVGPGPG I
Sbjct: 4 LRLPPLPTIGDIIRMYGLRAEKQLSQNFLLDMNLTDKIVRHAGSLNGRYVCEVGPGPGGI 63
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TRSIL+ ++++IEKD RF P L++LA+AS + GDVM + M+NMF D R+ W
Sbjct: 64 TRSILHSGAKKVIVIEKDQRFMPSLELLAEASDGRLGLIHGDVMKYNMRNMFPNDLRKAW 123
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQAISEN 157
+ P + IIGNLPF+VSTPLII+W++AIS +
Sbjct: 124 EDDPPDVHIIGNLPFSVSTPLIIRWMEAISSH 155
>gi|431904536|gb|ELK09918.1| Mitochondrial dimethyladenosine transferase 1 [Pteropus alecto]
Length = 285
Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 103/236 (43%), Positives = 144/236 (61%), Gaps = 17/236 (7%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
+ RLPP+P+IR+IIKL++L+A+KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 9 SFRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIEKAFPESLKRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE-NLLFPKHKRQLVVSLLERACVKPILRP 183
W + P + IIGNLPF+VSTPLIIKW++ +S + F + Q+ ++
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENMSHRDGPFAYGRTQMTLT------------- 175
Query: 184 YQLSVQEFGQICLAYRDMCEE-MPGLYEYTLEDTPGDIEPEAVAEQEGEGDEIDFN 238
+Q V E + YRD +P + ++ PG E A +Q+ DE D +
Sbjct: 176 FQKEVAE--HVLWEYRDGGSGLLPEVMTEFTQEVPGSAENHARGKQQHGRDESDVD 229
>gi|348565500|ref|XP_003468541.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Cavia porcellus]
Length = 346
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/168 (54%), Positives = 122/168 (72%), Gaps = 1/168 (0%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
ALRLPP+P+IR+IIKL+KL+A+KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 9 ALRLPPLPTIREIIKLFKLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F + +R
Sbjct: 69 ITRSILNANVAELLVVEKDSRFIPGLQMLSDAAPGKLKIVHGDVLTFKVEKSFPKSLKRS 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS-ENLLFPKHKRQLVVSL 171
W + P + IIGNLPF+VSTPLIIKW++ IS +N F + Q+ ++
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENISNQNGPFTYGRTQMTLTF 176
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LL+ A + P LRP QLS+ F +C YR MC+E P L+ Y D
Sbjct: 266 MLFPEAQRLESTEKLLQLADIDPTLRPTQLSLLHFRSLCDIYRKMCDEDPQLFGYNFRD 324
>gi|321476312|gb|EFX87273.1| hypothetical protein DAPPUDRAFT_307097 [Daphnia pulex]
Length = 332
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/150 (57%), Positives = 116/150 (77%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P++RD++ LY+L+A+KQLSQNFL +P+LT K+V AG IT VCEVGPG GS+T
Sbjct: 9 RLPPLPAVRDLLNLYRLQAVKQLSQNFLIDPKLTSKLVSAAGKITNGYVCEVGPGAGSLT 68
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
R IL+R +LV++EKD RF P L+MLA+AS + GDV+S + N F E+ +RDW+
Sbjct: 69 RVILSRNVNKLVVVEKDKRFQPPLEMLAEASGDRMSIVWGDVLSHNLTNAFPEESKRDWT 128
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+ P I IIGNLPFN++TPLII+W++AISE
Sbjct: 129 DQPPNIHIIGNLPFNIATPLIIRWLKAISE 158
Score = 43.1 bits (100), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 159 LFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEY 211
LFP R + LL+ A V LRP++LS++EF +IC AY + E+ P L Y
Sbjct: 265 LFPSSMRDEQTHKLLQLADVDGTLRPFELSIEEFNRICQAYSIILEKYPSLERY 318
>gi|387915432|gb|AFK11325.1| dimethyladenosine transferase 1, mitochondrial [Callorhinchus
milii]
Length = 353
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/151 (56%), Positives = 117/151 (77%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
+ RLPP+P+I +IIKLYKLRA KQLSQNFL + RLTDKIVRNAG++ + VCEVGPGPG
Sbjct: 8 SFRLPPLPTIGEIIKLYKLRAEKQLSQNFLLDLRLTDKIVRNAGSLKDSYVCEVGPGPGG 67
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN +L+++EKD RF P L +LA+A+P + GD++++ M+ F ++ + +
Sbjct: 68 ITRSILNAGITQLLVVEKDTRFIPGLQLLAEAAPGKMKIVHGDILTYKMERAFPKELQTE 127
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W +G P + IIGNLPFNVSTPLII+W++ ++
Sbjct: 128 WKDGPPNVHIIGNLPFNVSTPLIIRWLENVA 158
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R +L +++ A V P+LRP +LS+ F ++C AY +C E P L+ Y +
Sbjct: 265 ILFPESQRKELTDQMIDVADVDPLLRPVELSIPHFRRLCDAYGQLCAEHPHLFTYNFRE 323
>gi|432111751|gb|ELK34796.1| Dimethyladenosine transferase 1, mitochondrial [Myotis davidii]
Length = 345
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/155 (57%), Positives = 114/155 (73%)
Query: 2 AAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPG 61
A RLPP+P+IR+IIKL+KL+A KQLSQNFL + RLTDKIVR AG++T V EVGPG
Sbjct: 6 AIGTFRLPPLPTIREIIKLFKLQAAKQLSQNFLLDLRLTDKIVRKAGSLTDAYVYEVGPG 65
Query: 62 PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR 121
PG ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E
Sbjct: 66 PGGITRSILNAGIAELLVVEKDSRFLPGLQMLSDAAPGKLRIVHGDVLTFKVERAFPESL 125
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+R W + P + IIGNLPFNVSTPLIIKW++ +S+
Sbjct: 126 KRQWEDDPPNVHIIGNLPFNVSTPLIIKWLENVSQ 160
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LL+ A V P LRP QLSV F +C YR MC+E P L+ Y +
Sbjct: 265 GMLFPEAQRLERTGRLLQWADVDPTLRPCQLSVSHFKSLCDVYRRMCDEDPHLFAYNFRE 324
Query: 216 TPGDIEPEAVAEQEGEGD 233
+++ A QE E D
Sbjct: 325 ---ELKKNKRAGQEREAD 339
>gi|194227549|ref|XP_001493452.2| PREDICTED: mitochondrial dimethyladenosine transferase 1-like
[Equus caballus]
Length = 348
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 112/151 (74%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL++L A+KQLSQNFL + RLTDKIVR AGT+T V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFRLHAVKQLSQNFLLDLRLTDKIVRKAGTLTNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNAGVAELLVVEKDSRFLPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRH 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPF+VSTPLIIKW++ +S
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENVS 159
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LL+ A V P LRP QLSV F +C YR MC+E P L+ Y +
Sbjct: 265 GMLFPEAQRLESTGKLLQLADVDPTLRPSQLSVSHFKSLCDVYRKMCDEDPHLFAYNFRE 324
Query: 216 TPGDIEPEAVAEQEGEGDE 234
+++ QE E +E
Sbjct: 325 ---ELKQNKSKNQEKEDEE 340
>gi|281345012|gb|EFB20596.1| hypothetical protein PANDA_016957 [Ailuropoda melanoleuca]
Length = 345
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 111/151 (73%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL++L+A KQLSQNFL + +LTDKIVR AG +T V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFRLQAAKQLSQNFLLDLKLTDKIVRKAGNLTDAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNANVAELLVVEKDSRFIPGLQMLSDAAPGKLKIVHGDVLTFKIERAFPESLKRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPFNVSTPLIIKW++ +S
Sbjct: 129 WEDDPPNVHIIGNLPFNVSTPLIIKWLENVS 159
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LLE A V P L+P QLSV F +C Y+ MC+E P L+ Y +
Sbjct: 266 MLFPEIQRVESTEKLLELADVDPTLQPSQLSVSHFKSLCHVYQKMCDEDPHLFAYNFRE 324
>gi|301783565|ref|XP_002927199.1| PREDICTED: mitochondrial dimethyladenosine transferase 1-like
[Ailuropoda melanoleuca]
Length = 351
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 111/151 (73%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL++L+A KQLSQNFL + +LTDKIVR AG +T V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFRLQAAKQLSQNFLLDLKLTDKIVRKAGNLTDAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNANVAELLVVEKDSRFIPGLQMLSDAAPGKLKIVHGDVLTFKIERAFPESLKRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPFNVSTPLIIKW++ +S
Sbjct: 129 WEDDPPNVHIIGNLPFNVSTPLIIKWLENVS 159
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LLE A V P L+P QLSV F +C Y+ MC+E P L+ Y +
Sbjct: 266 MLFPEIQRVESTEKLLELADVDPTLQPSQLSVSHFKSLCHVYQKMCDEDPHLFAYNFRE 324
>gi|395850689|ref|XP_003797909.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial [Otolemur
garnettii]
Length = 344
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 112/151 (74%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL +L+A+KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLLRLKAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNANVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFPESLKRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P I IIGNLPF+VSTPLIIKW++++S
Sbjct: 129 WEDDPPNIHIIGNLPFSVSTPLIIKWLESVS 159
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 157 NLLFPKHKRQLVVS-LLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R LL+ A V P LRP QLS+ F +C YR MC+E P L+ Y D
Sbjct: 265 GMLFPEAQRVGSTGRLLQWADVDPTLRPSQLSISHFKSLCDVYRRMCDEDPNLFAYNFRD 324
>gi|190360597|ref|NP_001121947.1| dimethyladenosine transferase 1, mitochondrial [Sus scrofa]
gi|186886356|gb|ACC93577.1| CGI-75 protein [Sus scrofa]
Length = 340
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/168 (52%), Positives = 120/168 (71%), Gaps = 1/168 (0%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+II+L+KL+A+KQLSQNFL + RLTDKIVR AG++T V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIRLFKLQAVKQLSQNFLLDLRLTDKIVRKAGSLTNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE-NLLFPKHKRQLVVSL 171
W + P + IIGNLPF+VSTPLIIKW++ +S N F + Q+ ++
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENVSHRNGPFAYGRTQMTLTF 176
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LLE A V P LRP QLSV F +C YR MC+E P L+ Y +
Sbjct: 265 GMLFPEAQRMERTGKLLESADVDPTLRPTQLSVSHFQSLCDVYRKMCDEDPHLFAYNFRE 324
>gi|116004017|ref|NP_001070364.1| mitochondrial dimethyladenosine transferase 1 isoform 2 [Bos
taurus]
gi|83638584|gb|AAI09842.1| Transcription factor B1, mitochondrial [Bos taurus]
gi|296483883|tpg|DAA25998.1| TPA: mitochondrial dimethyladenosine transferase 1 isoform 2 [Bos
taurus]
Length = 226
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 113/152 (74%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL++L+A+KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
W + P + IIGNLPF+VSTPLIIKW++ +S+
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENVSQ 160
>gi|440909491|gb|ELR59395.1| Mitochondrial dimethyladenosine transferase 1 [Bos grunniens mutus]
Length = 341
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 113/152 (74%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL++L+A+KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKVERAFPESLKRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
W + P + IIGNLPF+VSTPLIIKW++ +S+
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENVSQ 160
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LLE A V P LRP QL+V F +C YR MC+E P L+ Y +
Sbjct: 265 GMLFPEARRLESTGKLLELADVDPTLRPTQLTVSHFKSLCDVYRKMCDEDPHLFAYNFRE 324
>gi|426234990|ref|XP_004011474.1| PREDICTED: mitochondrial dimethyladenosine transferase 1-like [Ovis
aries]
Length = 226
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 113/152 (74%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL++L+A+KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
W + P + IIGNLPF+VSTPLIIKW++ +S+
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENVSQ 160
>gi|417399311|gb|JAA46678.1| Putative ribosomal rna adenine dimethylase [Desmodus rotundus]
Length = 345
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 113/152 (74%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL++L+A+KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKVERAFPESLKRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
W + P + IIGNLPF+VSTPLIIKW++ +S+
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENVSQ 160
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 157 NLLFPK-HKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R+ LL+ A V P LRP QLSV F +C YR+MC++ P L+ Y +
Sbjct: 265 GMLFPEAQRRESTGKLLQMAEVDPTLRPTQLSVSHFRSLCDVYREMCDKDPRLFAYNFRE 324
Query: 216 TPGDIEPEAVAEQEGEGD 233
+ + +QE EGD
Sbjct: 325 ---ERKKNKCKDQEQEGD 339
>gi|167830454|ref|NP_001108082.1| mitochondrial dimethyladenosine transferase 1 isoform 1 [Bos
taurus]
gi|124053396|sp|Q2TBQ0.2|TFB1M_BOVIN RecName: Full=Mitochondrial dimethyladenosine transferase 1;
AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
AltName: Full=Mitochondrial transcription factor B1;
Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
Precursor
gi|296483884|tpg|DAA25999.1| TPA: mitochondrial dimethyladenosine transferase 1 isoform 1 [Bos
taurus]
Length = 341
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 113/152 (74%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL++L+A+KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
W + P + IIGNLPF+VSTPLIIKW++ +S+
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENVSQ 160
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LLE A V P LRP QL+V F +C YR MC+E P L+ Y +
Sbjct: 265 GMLFPEARRLESTGKLLELADVDPTLRPTQLTVSHFKSLCDVYRKMCDEDPHLFAYNFRE 324
>gi|307184319|gb|EFN70777.1| Dimethyladenosine transferase 1, mitochondrial [Camponotus
floridanus]
Length = 348
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 88/155 (56%), Positives = 113/155 (72%), Gaps = 3/155 (1%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
A RLPP+PSIRDI+KLY+L A+K+LSQNFL + RL DKI+ +G +TG++V EVGPGPG
Sbjct: 3 AARLPPLPSIRDILKLYRLNAIKRLSQNFLLDQRLIDKIISKSGHLTGSQVLEVGPGPGG 62
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQ---ASPCPVHFHLGDVMSFTMQNMFSEDR 121
+TRSIL + P RLV++EKD RF P LDMLA A + D+ ++N+F +
Sbjct: 63 LTRSILKQVPKRLVVVEKDRRFKPTLDMLADSFGAINGQMDIIYDDITKINLENLFPMEE 122
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+RDW + P I IIGNLPFNVSTPLIIKW+ AI+E
Sbjct: 123 KRDWDDKNPDIYIIGNLPFNVSTPLIIKWLHAIAE 157
>gi|441602135|ref|XP_004087716.1| PREDICTED: LOW QUALITY PROTEIN: dimethyladenosine transferase 1,
mitochondrial [Nomascus leucogenys]
Length = 347
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 111/149 (74%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+IR+IIKL++L+A KQLSQNFL + RLTDKIVR AG +T V EVGPGPG IT
Sbjct: 11 RLPPLPTIREIIKLFRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN L+++EKD RF P L ML+ A+P + GDV++F ++ FSE +R W
Sbjct: 71 RSILNADVTELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LLE A V P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLESTGRLLELADVDPTLRPSQLSISHFKSLCDVYRKMCDEDPQLFAYNFRE 324
>gi|296199503|ref|XP_002747175.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial
[Callithrix jacchus]
Length = 343
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 112/151 (74%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+PSIR+IIKL++L+A KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 9 TFRLPPLPSIREIIKLFRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTDAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNASVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFPESLKRP 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPF+VSTPLIIKW++++S
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLESMS 159
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LLE A V P LRP QLS+ +F +C YR MC+E P L+ Y +
Sbjct: 265 GMLFPEAQRLESTGRLLELADVDPTLRPRQLSIPQFKSLCDVYRRMCDEDPHLFAYNFRE 324
>gi|355748806|gb|EHH53289.1| hypothetical protein EGM_13900 [Macaca fascicularis]
Length = 345
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 112/149 (75%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+IR+IIKL++L+A KQLSQNFL + RLTDKIVR AG + V EVGPGPG IT
Sbjct: 11 RLPPLPTIREIIKLFRLQATKQLSQNFLLDLRLTDKIVRKAGNLANAYVYEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN A L+++EKD RF P L ML++A+P + GDV++F ++ FSE +R W
Sbjct: 71 RSILNADVAELLVVEKDTRFIPGLQMLSEAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + LLE A + P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFKSLCEVYRRMCDEDPQLFAYNFRE- 324
Query: 217 PGDIEPEAVAEQEGEGDEIDF 237
++ + ++E + D +
Sbjct: 325 --ELRQRKIKKKEKQDDAKSY 343
>gi|387849079|ref|NP_001248411.1| transcription factor B1, mitochondrial [Macaca mulatta]
gi|355561958|gb|EHH18590.1| hypothetical protein EGK_15233 [Macaca mulatta]
gi|380813322|gb|AFE78535.1| dimethyladenosine transferase 1, mitochondrial [Macaca mulatta]
Length = 345
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 112/149 (75%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+IR+IIKL++L+A KQLSQNFL + RLTDKIVR AG + V EVGPGPG IT
Sbjct: 11 RLPPLPTIREIIKLFRLQATKQLSQNFLLDLRLTDKIVRKAGNLANAYVYEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN A L+++EKD RF P L ML++A+P + GDV++F ++ FSE +R W
Sbjct: 71 RSILNADVAELLVVEKDTRFIPGLQMLSEAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + LLE A + P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFRSLCEVYRRMCDEDPQLFAYNFRE- 324
Query: 217 PGDIEPEAVAEQEGEGDEIDF 237
++ + ++E + D +
Sbjct: 325 --ELRQRKIKKKEKQDDAKSY 343
>gi|122136705|sp|Q2PG46.1|TFB1M_MACFA RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
AltName: Full=Mitochondrial transcription factor B1;
Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
Precursor
gi|84578981|dbj|BAE72924.1| hypothetical protein [Macaca fascicularis]
Length = 345
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 112/149 (75%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+IR+IIKL++L+A KQLSQNFL + RLTDKIVR AG + V EVGPGPG IT
Sbjct: 11 RLPPLPTIREIIKLFRLQATKQLSQNFLLDLRLTDKIVRKAGNLANAYVYEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN A L+++EKD RF P L ML++A+P + GDV++F ++ FSE +R W
Sbjct: 71 RSILNADVAELLVVEKDTRFIPGLQMLSEAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + LLE A + P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFKSLCEVYRRMCDEDPQLFAYNFRE- 324
Query: 217 PGDIEPEAVAEQEGEGDEIDF 237
++ + ++E + D +
Sbjct: 325 --ELRQRKIKKKEKQDDAKSY 343
>gi|402867874|ref|XP_003898054.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial [Papio
anubis]
Length = 345
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 112/149 (75%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+IR+IIKL++L+A KQLSQNFL + RLTDKIVR AG + V EVGPGPG IT
Sbjct: 11 RLPPLPTIREIIKLFRLQATKQLSQNFLLDLRLTDKIVRKAGNLANAYVYEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN A L+++EKD RF P L ML++A+P + GDV++F ++ FSE +R W
Sbjct: 71 RSILNADVAELLVVEKDTRFIPGLQMLSEAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + LLE A + P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAERLENTGRLLELADIDPTLRPRQLSISHFKSLCEVYRRMCDEDPQLFAYNFRE- 324
Query: 217 PGDIEPEAVAEQEGEGDEIDF 237
++ + ++E + D +
Sbjct: 325 --ELRQRKIKKKEKQDDAKSY 343
>gi|114609909|ref|XP_001143300.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial isoform 3
[Pan troglodytes]
gi|410209816|gb|JAA02127.1| transcription factor B1, mitochondrial [Pan troglodytes]
gi|410295310|gb|JAA26255.1| transcription factor B1, mitochondrial [Pan troglodytes]
gi|410336263|gb|JAA37078.1| transcription factor B1, mitochondrial [Pan troglodytes]
Length = 346
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 111/149 (74%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+IR+IIKL +L+A KQLSQNFL + RLTDKIVR AG +T V EVGPGPG IT
Sbjct: 11 RLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ FSE +R W
Sbjct: 71 RSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + LLE A + P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCEVYRKMCDEDPQLFAYNFRE- 324
Query: 217 PGDIEPEAVAEQEGEGDEIDFNKL 240
+++ +E E D+ + +L
Sbjct: 325 --ELKRRKSKNEEKEEDDAENYRL 346
>gi|291397177|ref|XP_002714996.1| PREDICTED: Dimethyladenosine transferase 1, mitochondrial-like
[Oryctolagus cuniculus]
Length = 364
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/151 (56%), Positives = 112/151 (74%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL++L+A+KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTDAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNANVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKLEKAFPESLKRH 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPF+VSTPLI+KW++ +S
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIVKWLEHVS 159
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LL A V+P LRP QLS+ F +C YR MC+ P L+ Y +
Sbjct: 265 GMLFPEAQRLESTERLLHLADVEPTLRPRQLSIAHFRSLCDIYRRMCDGDPQLFAYDFRE 324
>gi|351708504|gb|EHB11423.1| Dimethyladenosine transferase 1, mitochondrial [Heterocephalus
glaber]
Length = 435
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 112/151 (74%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
ALRLPP+P+IR+IIKL++L+A+KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 45 ALRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGG 104
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F +
Sbjct: 105 ITRSILNANVAELLVVEKDTRFIPGLQMLSDAAPGKLKIVHGDVLTFMIEKSFPASLKTP 164
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 165 WEDDPPNVHIIGNLPFSVSTPLIIKWLENIS 195
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LLE A + P LRP QLS+ F +C YR MC+E L+ Y +
Sbjct: 353 GMLFPEARRLESTGKLLELADIDPTLRPTQLSILHFRSLCDIYRKMCDEDQQLFGYNFRE 412
>gi|397468334|ref|XP_003805843.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial [Pan
paniscus]
Length = 346
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 111/149 (74%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+IR+IIKL +L+A KQLSQNFL + RLTDKIVR AG +T V EVGPGPG IT
Sbjct: 11 RLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ FSE +R W
Sbjct: 71 RSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + LLE A + P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCDEDPQLFAYNFRE- 324
Query: 217 PGDIEPEAVAEQEGEGDEIDFNKL 240
+++ +E E D+ + +L
Sbjct: 325 --ELKRRKSKNEEKEEDDTENYRL 346
>gi|156415992|ref|NP_057104.2| dimethyladenosine transferase 1, mitochondrial [Homo sapiens]
gi|426354983|ref|XP_004044918.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial isoform 1
[Gorilla gorilla gorilla]
gi|426354985|ref|XP_004044919.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial isoform 2
[Gorilla gorilla gorilla]
gi|74751555|sp|Q8WVM0.1|TFB1M_HUMAN RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
AltName: Full=Mitochondrial transcription factor B1;
Short=h-mtTFB; Short=h-mtTFB1; Short=hTFB1M;
Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
Precursor
gi|17389500|gb|AAH17788.1| Transcription factor B1, mitochondrial [Homo sapiens]
gi|119568075|gb|EAW47690.1| transcription factor B1, mitochondrial [Homo sapiens]
gi|123982134|gb|ABM82896.1| transcription factor B1, mitochondrial [synthetic construct]
gi|123996967|gb|ABM86085.1| transcription factor B1, mitochondrial [synthetic construct]
gi|208967957|dbj|BAG73817.1| mitochondrial transcription factor B1 [synthetic construct]
gi|311350098|gb|ADP92254.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350100|gb|ADP92255.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350102|gb|ADP92256.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350104|gb|ADP92257.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350106|gb|ADP92258.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350108|gb|ADP92259.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350110|gb|ADP92260.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350112|gb|ADP92261.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350114|gb|ADP92262.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350116|gb|ADP92263.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350118|gb|ADP92264.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350120|gb|ADP92265.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350122|gb|ADP92266.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350124|gb|ADP92267.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350126|gb|ADP92268.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350128|gb|ADP92269.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350130|gb|ADP92270.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350132|gb|ADP92271.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350134|gb|ADP92272.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350136|gb|ADP92273.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350138|gb|ADP92274.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350140|gb|ADP92275.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350142|gb|ADP92276.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350144|gb|ADP92277.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350146|gb|ADP92278.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350148|gb|ADP92279.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350150|gb|ADP92280.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350152|gb|ADP92281.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350154|gb|ADP92282.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350156|gb|ADP92283.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350158|gb|ADP92284.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350160|gb|ADP92285.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350162|gb|ADP92286.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350164|gb|ADP92287.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350166|gb|ADP92288.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350168|gb|ADP92289.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350170|gb|ADP92290.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350172|gb|ADP92291.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350174|gb|ADP92292.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
gi|311350176|gb|ADP92293.1| mitochondrial dimethyladenosine transferase 1 [Homo sapiens]
Length = 346
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 111/149 (74%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+IR+IIKL +L+A KQLSQNFL + RLTDKIVR AG +T V EVGPGPG IT
Sbjct: 11 RLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ FSE +R W
Sbjct: 71 RSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + LLE A + P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCDEDPQLFAYNFRE- 324
Query: 217 PGDIEPEAVAEQEGEGDEIDFNKL 240
+++ +E E D+ + +L
Sbjct: 325 --ELKRRKSKNEEKEEDDAENYRL 346
>gi|224048037|ref|XP_002196390.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial
[Taeniopygia guttata]
Length = 351
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 114/152 (75%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
A RLPP+P+I +IIKL++L+ALKQLSQNFL + RLTDKIV+ AG + VCEVGPGPG
Sbjct: 9 AFRLPPLPTIGEIIKLFRLKALKQLSQNFLLDLRLTDKIVKQAGELKNAHVCEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSIL+ +L+LIEKD RF P L ML++A+P V GD++++ M+ F + ++
Sbjct: 69 ITRSILSAGVEQLLLIEKDARFIPGLQMLSEAAPGKVRIVHGDILTYKMEKAFPKHLKKS 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
W + P I IIGNLPF+VSTPLIIKW++ +S+
Sbjct: 129 WDDEPPDIHIIGNLPFSVSTPLIIKWLENVSK 160
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 159 LFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
LFP++ R + L+ A V P LRP+QLS+ +F +C AYR MC+E P L+ + +
Sbjct: 267 LFPENGRLKRTEQLMMTANVDPTLRPFQLSMSQFRNLCNAYRKMCDEDPSLFVFNYRE 324
>gi|444732455|gb|ELW72747.1| Dimethyladenosine transferase 1, mitochondrial [Tupaia chinensis]
Length = 307
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 113/151 (74%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL++L+A+KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGDLTNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A+L+++EKD RF P L ML+ A+P + GDV++F ++ F + +R
Sbjct: 69 ITRSILNANVAKLLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKIEKAFPANLKRP 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 129 WEDEPPSVHIIGNLPFSVSTPLIIKWLENIS 159
>gi|403284933|ref|XP_003933802.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial isoform 1
[Saimiri boliviensis boliviensis]
gi|403284935|ref|XP_003933803.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial isoform 2
[Saimiri boliviensis boliviensis]
Length = 345
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 112/151 (74%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+PSIR+IIKL++L+A KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 9 TFRLPPLPSIREIIKLFRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTDAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNAGVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFPESLKRP 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPF+VSTPLIIKW++++S
Sbjct: 129 WEDDPPDVHIIGNLPFSVSTPLIIKWLESMS 159
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LLE A V P LRP QLS+ +F +C YR MC+E P L+ Y +
Sbjct: 265 GMLFPEAQRLESTGRLLELADVDPTLRPRQLSIPQFKSLCDVYRRMCDEDPHLFAYNFRE 324
Query: 216 TPGDIEPEAVAEQEGEGD 233
+ E E+E +G+
Sbjct: 325 ELKQRKSEK-KEKEDDGE 341
>gi|116283278|gb|AAH05183.1| TFB1M protein [Homo sapiens]
Length = 341
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 111/149 (74%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+IR+IIKL +L+A KQLSQNFL + RLTDKIVR AG +T V EVGPGPG IT
Sbjct: 11 RLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ FSE +R W
Sbjct: 71 RSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LLE A + P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCDEDPQLFAYNFRE 324
>gi|197101331|ref|NP_001126887.1| dimethyladenosine transferase 1, mitochondrial [Pongo abelii]
gi|75054716|sp|Q5R4V9.1|TFB1M_PONAB RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
AltName: Full=Mitochondrial transcription factor B1;
Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
Precursor
gi|55733044|emb|CAH93207.1| hypothetical protein [Pongo abelii]
Length = 343
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 111/149 (74%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+IR+IIKL +++A KQLSQNFL + RLTDKIVR AG +T V EVGPGPG IT
Sbjct: 11 RLPPLPTIREIIKLLRVQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ FSE +R W
Sbjct: 71 RSILNADVAELLVVEKDTRFVPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPDVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + LLE A V P LRP Q S+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLESTGRLLELADVDPTLRPCQPSISHFKSLCDVYRKMCDEDPQLFAYNFRE- 324
Query: 217 PGDIEPEAVAEQEGEGDEID 236
+++ +E E D+ +
Sbjct: 325 --ELKQRKSKNEEKEEDDAE 342
>gi|327262022|ref|XP_003215825.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Anolis carolinensis]
Length = 345
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 112/152 (73%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+I ++IKL+KL+A+KQLSQNFL + RLTDKI R+AG + VCEVGPGPG
Sbjct: 9 VFRLPPLPTIGEVIKLFKLKAVKQLSQNFLLDLRLTDKIARSAGNLKDAHVCEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITR+ILN A L+L+EKDPRF P L ML++A+P V GD++++ + F ++
Sbjct: 69 ITRAILNAGVAELLLVEKDPRFIPGLQMLSEAAPGKVRVVHGDILTYKLGQAFPNHLIKN 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
W + P I IIGNLPF+VSTPLIIKW++ IS+
Sbjct: 129 WEDDPPDIHIIGNLPFSVSTPLIIKWLENISK 160
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ R + +L A V P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 ILFPEATRLEKAEQMLMLADVDPTLRPTQLSMFHFKNLCDVYRKMCDEDPSLFAYNYRE 324
>gi|22122569|ref|NP_666186.1| dimethyladenosine transferase 1, mitochondrial [Mus musculus]
gi|81878249|sp|Q8JZM0.1|TFB1M_MOUSE RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
AltName: Full=Mitochondrial transcription factor B1;
Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
Precursor
gi|21039484|gb|AAM33651.1|AF508971_1 transcription factor b1 [Mus musculus]
gi|21410720|gb|AAH32930.1| Transcription factor B1, mitochondrial [Mus musculus]
gi|148669697|gb|EDL01644.1| transcription factor B1, mitochondrial [Mus musculus]
Length = 345
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 111/151 (73%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL+ LRA+KQLSQNFL + RLTDKIVR AG++ V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFGLRAVKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV+++ ++ F + RR
Sbjct: 69 ITRSILNANVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPGNIRRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LL+ A + P LRP LS+ F +C YR MC+E P L+ Y +
Sbjct: 265 GMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDVYRKMCDEDPQLFTYNFRE 324
Query: 216 TPGDIEPEAVAEQEGEGD 233
+++ + QE +GD
Sbjct: 325 ---ELKQKKSKGQEKDGD 339
>gi|73946166|ref|XP_533459.2| PREDICTED: dimethyladenosine transferase 1, mitochondrial [Canis
lupus familiaris]
Length = 345
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 110/151 (72%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL++L A KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFRLHAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNANVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPEILKRP 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPF+VSTPLIIKW++ +S
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENVS 159
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 158 LLFPK-HKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ H+ + LLE A V P LRP QLSV F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPQIHRVESTGKLLELADVDPTLRPSQLSVSHFKSLCDVYRKMCDEDPHLFAYNFRE- 324
Query: 217 PGDIEPEAVAEQEGEGDE 234
+++ QE E D+
Sbjct: 325 --ELKQNKSKNQEKEDDK 340
>gi|48976087|ref|NP_852139.2| dimethyladenosine transferase 1, mitochondrial [Rattus norvegicus]
gi|47718050|gb|AAH70907.1| Transcription factor B1, mitochondrial [Rattus norvegicus]
gi|149038492|gb|EDL92822.1| transcription factor B1, mitochondrial [Rattus norvegicus]
Length = 345
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 111/151 (73%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL+ LRA KQLSQNFL + RLTDKIVR AG++ V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFGLRAAKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV+++ ++ F ++ RR
Sbjct: 69 ITRSILNADIAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPDNIRRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LL+ A + P LRP LS+ F +C YR MC+E P L+ Y +
Sbjct: 265 GMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDVYRKMCDEDPQLFAYNFRE 324
Query: 216 TPGDIEPEAVAEQEGEGD 233
+++ + QE +GD
Sbjct: 325 ---ELKQKKRKGQEKDGD 339
>gi|81871169|sp|Q811P6.1|TFB1M_RAT RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
AltName: Full=Mitochondrial transcription factor B1;
Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
Precursor
gi|28569596|gb|AAO42744.1| mitochondrial transcription factor b1 [Rattus norvegicus]
Length = 345
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 111/151 (73%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL+ LRA KQLSQNFL + RLTDKIVR AG++ V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFGLRAAKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV+++ ++ F ++ RR
Sbjct: 69 ITRSILNADIAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPDNIRRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LL+ A + P LRP LS+ F +C YR MC+E P L+ Y +
Sbjct: 265 GMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDVYRKMCDEDPQLFAYNFRE 324
Query: 216 TPGDIEPEAVAEQEGEGD 233
+++ + QE +GD
Sbjct: 325 ---ELKQKKRKGQEKDGD 339
>gi|410960296|ref|XP_003986729.1| PREDICTED: mitochondrial dimethyladenosine transferase 1-like
[Felis catus]
Length = 345
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/151 (55%), Positives = 111/151 (73%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL++L+A+KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGDLTNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN L+++EKD RF P L ML+ A+P + GDV+++ ++ F E +R
Sbjct: 69 ITRSILNANVTELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTYKIERAFPESLKRR 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPF+VSTPLIIKW++ +S
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENVS 159
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + LLE A V P LRP QLSV F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEVQRVESTEKLLELADVDPTLRPSQLSVSHFKSLCDVYRKMCDEDPHLFTYNFRE- 324
Query: 217 PGDIEPEAVAEQEGEGDE 234
+++ QE E D+
Sbjct: 325 --ELKQNKSKNQERENDK 340
>gi|449277869|gb|EMC85891.1| Dimethyladenosine transferase 1, mitochondrial [Columba livia]
Length = 346
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 114/152 (75%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
RLPP+P+I +IIKL++L+A KQLSQNFL + RLTDKIVR AG + VCEVGPGPG I
Sbjct: 10 FRLPPLPTIGEIIKLFRLKAQKQLSQNFLLDLRLTDKIVRQAGELKNAHVCEVGPGPGGI 69
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TRSIL+ +L+LIEKDPRF P L +L++A+P V GD++++ M+ F + +++W
Sbjct: 70 TRSILSAGVEQLLLIEKDPRFIPGLQILSEAAPGKVCIVHGDILTYKMEKAFPKHLKKNW 129
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQAISEN 157
+ P I IIGNLPF+VSTPLIIKW++ +S+
Sbjct: 130 DDEPPDIHIIGNLPFSVSTPLIIKWLENVSKK 161
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 159 LFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
LFP+ R + L+ A V P LRP+QLS+ +F +C YR MC+E P L+ Y+ +
Sbjct: 267 LFPQDGRLKRTEQLMMTANVDPTLRPFQLSMSQFRNLCDTYRKMCDEDPSLFAYSYRE 324
>gi|380023715|ref|XP_003695658.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Apis florea]
Length = 341
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 110/156 (70%), Gaps = 3/156 (1%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
+RLPP+P+IRDI+K+Y+LRA+K+LSQNF+ L+DKI++ AG +T V E+GPGPGS
Sbjct: 3 TIRLPPLPNIRDILKIYRLRAMKELSQNFILNQNLSDKIIKKAGNLTDCHVLEIGPGPGS 62
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC---PVHFHLGDVMSFTMQNMFSEDR 121
+TRSIL +P +L+++EKD RF P L+MLA A + D+M M N F
Sbjct: 63 LTRSILKSQPKQLIVVEKDKRFKPTLEMLADAFAAVNGKMEIIFDDIMKINMNNFFPSTE 122
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISEN 157
+ W+E P I++IGNLPFNVSTPLIIKW+ AISE
Sbjct: 123 MKAWTEKCPRIKLIGNLPFNVSTPLIIKWLHAISEK 158
>gi|4929619|gb|AAD34070.1|AF151833_1 CGI-75 protein [Homo sapiens]
Length = 346
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 86/149 (57%), Positives = 110/149 (73%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+IR+IIKL +L+A +LSQNFL + RLTDKIVR AG +T V EVGPGPG IT
Sbjct: 11 RLPPLPTIREIIKLLRLQAANELSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ FSE +R W
Sbjct: 71 RSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + LLE A + P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCDEDPQLFAYNFRE- 324
Query: 217 PGDIEPEAVAEQEGEGDEIDFNKL 240
+++ +E E D+ + +L
Sbjct: 325 --ELKRRKSKNEEKEEDDAENYRL 346
>gi|326915765|ref|XP_003204183.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Meleagris gallopavo]
Length = 350
Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 83/151 (54%), Positives = 110/151 (72%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
LPP+P++ +IIKL+ LRA K+LSQNFL + RLTDKIVR AG + VCEVGPGPG I
Sbjct: 10 FHLPPLPTVGEIIKLFSLRAQKELSQNFLLDLRLTDKIVRQAGKLKNAYVCEVGPGPGGI 69
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TRSILN +L+L+EKD RF P L ML++A+P V GD++++ M+ F +++W
Sbjct: 70 TRSILNAGVQQLLLVEKDTRFIPGLQMLSEAAPGKVRIVHGDILTYKMERAFPNHLKKNW 129
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+ P I IIGNLPFNVSTPLIIKW++ +S+
Sbjct: 130 EDEPPNIHIIGNLPFNVSTPLIIKWLENVSK 160
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + L+ A V P LRP QL++ F +C YR MC+E P L+ Y +
Sbjct: 266 ILFPERERLKKTEQLMMAADVDPTLRPVQLTMSHFRNLCNTYRKMCDEDPNLFAYNYRE 324
>gi|126311223|ref|XP_001381331.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Monodelphis domestica]
Length = 344
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 111/152 (73%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
A RLPP+P++ +IIKL+ LRA KQLSQNFL + RLTDKIVR G + V EVGPGPG+
Sbjct: 9 AFRLPPLPTVGEIIKLFGLRAQKQLSQNFLLDLRLTDKIVRKTGDLKNAHVYEVGPGPGA 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
TRSILN + A L+++EKD RF P L ML+ A+P + GDV++F ++ MF E +R
Sbjct: 69 FTRSILNAQVADLLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVERMFPEHLKRR 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
W + P + IIGNLPF+VSTPLIIKW++ IS+
Sbjct: 129 WEDDPPNVYIIGNLPFSVSTPLIIKWLENISK 160
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + +L A V P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 ILFPQAERSKNTEKMLMLADVDPTLRPSQLSILHFKNLCDVYRKMCDENPNLFAYNFRE 324
>gi|355723907|gb|AES08046.1| transcription factor B1, mitochondrial [Mustela putorius furo]
Length = 347
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 112/157 (71%), Gaps = 6/157 (3%)
Query: 5 ALRLPPMPSIR------DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEV 58
A RLPP+P+IR +IIKL++L+A KQLSQNFL + RLTDKIV+ AG +T V EV
Sbjct: 9 AFRLPPLPTIRALPTIREIIKLFRLQAAKQLSQNFLLDLRLTDKIVKKAGNLTDAYVYEV 68
Query: 59 GPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS 118
GPGPG ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F
Sbjct: 69 GPGPGGITRSILNANVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKVERAFP 128
Query: 119 EDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
E +R W + P + IIGNLPFNVSTPLI+KW++ +S
Sbjct: 129 ESLKRQWEDDPPNVHIIGNLPFNVSTPLIVKWLENVS 165
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + LLE A V P LRP QLSV F +C YR MC+E P L+ Y +
Sbjct: 272 MLFPEVERVESTGKLLELADVDPTLRPTQLSVSHFKSLCDVYRKMCDEDPLLFAYNFRE- 330
Query: 217 PGDIEPEAVAEQEGEGDE 234
+++ QE E D+
Sbjct: 331 --ELKQNKSKNQEKEDDK 346
>gi|158259991|dbj|BAF82173.1| unnamed protein product [Homo sapiens]
Length = 346
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/148 (58%), Positives = 109/148 (73%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITR 67
LPP+P+IR+IIKL +L+A KQLSQNFL + RLTDKIVR AG +T V EVGPGPG ITR
Sbjct: 12 LPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITR 71
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
SILN A L+++EKD RF P L ML+ A+P + GDV++F ++ FSE +R W +
Sbjct: 72 SILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWED 131
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
P + IIG LPF+VSTPLIIKW++ IS
Sbjct: 132 DPPNVHIIGKLPFSVSTPLIIKWLENIS 159
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + LLE A + P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCDEDPQLFAYNFRE- 324
Query: 217 PGDIEPEAVAEQEGEGDEIDFNKL 240
+++ +E E D+ + +L
Sbjct: 325 --ELKRRKSKNEEKEEDDAENYRL 346
>gi|344264463|ref|XP_003404311.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Loxodonta africana]
Length = 345
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/151 (56%), Positives = 109/151 (72%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL++L+A KQLSQNFL + RLTDKIVR AG + V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFRLQAQKQLSQNFLLDLRLTDKIVRKAGNLRNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F +R
Sbjct: 69 ITRSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKIEKAFPGSLKRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P I IIGNLPF+VSTPLIIKW++ +S
Sbjct: 129 WEDDPPNIHIIGNLPFSVSTPLIIKWLENVS 159
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LL+ A V P LRP QLS+ F +C YR MC+ P L+ Y +
Sbjct: 265 GMLFPEAQRLESTGKLLQLADVDPTLRPCQLSLSHFKSLCDVYRKMCDGDPQLFAYNFRE 324
>gi|118088399|ref|XP_426165.2| PREDICTED: dimethyladenosine transferase 1, mitochondrial [Gallus
gallus]
Length = 350
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 111/151 (73%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
LPP+P++ +IIKL++LRA K+LSQNFL + RLTDKIVR AG + VCEVGPGPG I
Sbjct: 10 FHLPPLPTVGEIIKLFRLRAQKELSQNFLLDLRLTDKIVRQAGKLKNAYVCEVGPGPGGI 69
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TRSILN +L+L+EKD RF P L ML++A+P V GD++++ M+ F +++W
Sbjct: 70 TRSILNAGVEQLLLVEKDTRFIPGLQMLSEAAPGKVRIVHGDILTYKMEKAFPNHLKKNW 129
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+ P I IIGNLPF+VSTPLI+KW++ +S+
Sbjct: 130 EDEPPNIHIIGNLPFSVSTPLIVKWLENVSK 160
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + L+ A V P LRP+QL++ F +C YR MC+E P L+ Y +
Sbjct: 266 ILFPERERLKKTEQLMMAADVDPTLRPFQLTMAHFRNLCNTYRKMCDEDPSLFAYNYREE 325
Query: 217 PGDIE----PEAVAEQEGEGDE 234
G + PE++ + E +E
Sbjct: 326 LGQTKRKHSPESIDQLEQTKEE 347
>gi|357621625|gb|EHJ73400.1| dimethyladenosine transferase [Danaus plexippus]
Length = 339
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 117/157 (74%), Gaps = 2/157 (1%)
Query: 3 AKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGP 62
A +RLPP+PSI+D+IKLYKLRAL++LSQNFL EPRL DKIVR AG I + VCEVGPGP
Sbjct: 7 AFQVRLPPLPSIKDVIKLYKLRALRELSQNFLMEPRLLDKIVRAAGHIENHVVCEVGPGP 66
Query: 63 GSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHL--GDVMSFTMQNMFSED 120
G ITRSI+ + P +L+LIEKDPRFTP L++LA A V + GD++ + + +D
Sbjct: 67 GGITRSIVKQGPRKLILIEKDPRFTPSLELLADACKDVVDVDIITGDILKTDIAHFIPKD 126
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISEN 157
+ +W++ P + +IGNLPF+VST L+I+W++ IS+
Sbjct: 127 VKCEWTDPPPPVNLIGNLPFSVSTILMIRWLEMISKK 163
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 159 LFPKHKRQ-LVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEY 211
LFP+ R+ + +++ + A + P+ RP+Q++ EFG++C AY+++ + P Y
Sbjct: 269 LFPEEVREEMALTMYKMAEIDPVTRPFQIANGEFGRLCEAYKEIITKYPEFENY 322
>gi|410898256|ref|XP_003962614.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Takifugu rubripes]
Length = 356
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 110/153 (71%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
+LRLPP+P++ ++IKLY LRA KQLSQNFL + +LTDKIVR AG + VCEVGPGPG
Sbjct: 9 SLRLPPLPTVGELIKLYNLRAEKQLSQNFLLDLKLTDKIVRQAGCLKDAHVCEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
+TRSILN A L+++EKD RF P L +L++A+P V GD++++ M F D +
Sbjct: 69 LTRSILNAGAADLLVVEKDSRFIPGLKLLSEAAPGRVRIVHGDILTYRMDRGFPRDISKK 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISEN 157
W E P + IIGNLPF+VSTPLIIKW++ I+
Sbjct: 129 WHEDPPNLHIIGNLPFSVSTPLIIKWLENIANQ 161
>gi|383861168|ref|XP_003706058.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Megachile rotundata]
Length = 351
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 107/156 (68%), Gaps = 3/156 (1%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
A+RLPP+PSI+D++K+YKLRA+KQLSQNFL L+DKI++ +G + EVGPGPG
Sbjct: 3 AIRLPPLPSIKDVLKIYKLRAMKQLSQNFLLNDNLSDKIIKKSGNLADCYTVEVGPGPGG 62
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC---PVHFHLGDVMSFTMQNMFSEDR 121
+TRSIL + P +L++IEKD RF P L+ML A + D+M M N+F E
Sbjct: 63 LTRSILKQHPKKLIVIEKDTRFKPTLEMLVDAYAAVNGEMEVIYDDIMKIDMSNLFPETV 122
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISEN 157
+ W + P IR+IGNLPFNVSTPLIIKW+ AI E
Sbjct: 123 KVAWEDKSPKIRLIGNLPFNVSTPLIIKWLHAICEK 158
>gi|156539746|ref|XP_001600767.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial [Nasonia
vitripennis]
Length = 262
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 114/164 (69%), Gaps = 3/164 (1%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
+LRLPP P+IRDIIKLY+L A+KQLSQNFL LTDKIV++ G I ++V EVGPGPG
Sbjct: 3 SLRLPPTPTIRDIIKLYRLSAIKQLSQNFLMNEALTDKIVKSVGKIYNSQVLEVGPGPGG 62
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDML---AQASPCPVHFHLGDVMSFTMQNMFSEDR 121
ITRSIL + P +L+++EKD RF P LD++ AS + D+MS +++FS
Sbjct: 63 ITRSILKKNPKKLIVVEKDQRFRPILDLMESIVSASDVDMTLIYNDIMSINTKDVFSFKD 122
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKR 165
+++W++ P I I+GNLPF++ST LIIKW+ AIS+ H R
Sbjct: 123 KKEWNDECPNIFIVGNLPFSISTALIIKWLHAISKQKEAWSHGR 166
>gi|389609565|dbj|BAM18394.1| mitochondrial transcription factor B1 [Papilio xuthus]
Length = 341
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 113/155 (72%), Gaps = 2/155 (1%)
Query: 3 AKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGP 62
A +RLPP+PSI+D+I+LYKLRAL++LSQNFL EPRL DKIVR AG I N VCEVGPGP
Sbjct: 7 ALQIRLPPLPSIKDVIRLYKLRALRELSQNFLLEPRLIDKIVRAAGNIQNNIVCEVGPGP 66
Query: 63 GSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHL--GDVMSFTMQNMFSED 120
G ITRSI+ + P +++L+EKDPRF P L++L A V + GD++ + + D
Sbjct: 67 GGITRSIIQQAPRKVILVEKDPRFLPTLELLGDACKDKVDIDIITGDILHTDVAHFIPAD 126
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ W++ P + +IGNLPF+VST L+I+W++AIS
Sbjct: 127 VKVGWNDPPPPVNLIGNLPFSVSTILMIRWLEAIS 161
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 159 LFPKHKRQ-LVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTP 217
LFP+ R+ + + + A + P+ RPYQ++ EFG++C AY+ + E P L Y
Sbjct: 269 LFPEDIREEMALKMYNIADLDPVTRPYQITNSEFGRLCEAYKAIITEHPDLENYDYRAPK 328
Query: 218 GDIEPEAVAE 227
+ E V E
Sbjct: 329 KKVITENVDE 338
>gi|242023243|ref|XP_002432045.1| Dimethyladenosine transferase, putative [Pediculus humanus
corporis]
gi|212517403|gb|EEB19307.1| Dimethyladenosine transferase, putative [Pediculus humanus
corporis]
Length = 350
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/151 (50%), Positives = 110/151 (72%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
++ + P+P+IR+++KLY++ ALK+LSQNFL R+TD+IV+ AG I EVCEVGPGPG+
Sbjct: 2 SVTISPLPTIRELLKLYQVHALKRLSQNFLLNLRITDRIVKAAGKIKDGEVCEVGPGPGA 61
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSIL R P ++V+IEKD RF P L+ L +S C D+M + + +F E +++
Sbjct: 62 ITRSILMRNPQKVVVIEKDQRFEPMLENLETSSYCDFKIIYADIMDYDLSKLFDESLKKN 121
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W++ P I +IGNLPFNVSTPLI++W+ IS
Sbjct: 122 WNDVTPNIHLIGNLPFNVSTPLIVRWLNDIS 152
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 159 LFPKH-KRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEY 211
LFPK +L V L +R+ + P LR YQ+++ ++ ++CLAY+ +C+ P LY Y
Sbjct: 260 LFPKELSDKLSVELFQRSELNPKLRSYQMTMDDWNRLCLAYKFICDRDPRLYSY 313
>gi|115529417|ref|NP_001070237.1| dimethyladenosine transferase 1, mitochondrial [Danio rerio]
gi|115313290|gb|AAI24403.1| Zgc:153625 [Danio rerio]
gi|182891088|gb|AAI65534.1| Zgc:153625 protein [Danio rerio]
Length = 269
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/150 (53%), Positives = 108/150 (72%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+I +IIKLY L+A KQLSQNFL + RLTDKIVR AG + VCEVGPGPG +T
Sbjct: 11 RLPPLPTIGEIIKLYNLKAQKQLSQNFLLDTRLTDKIVRQAGNLNNAHVCEVGPGPGGLT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSIL A L+++EKD RF P L +L++A+P + GD++++ ++ F + + W
Sbjct: 71 RSILKAGAADLLVVEKDMRFIPGLQLLSEAAPGRIRIAQGDILAYKLERRFPANITKTWE 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+ P + IIGNLPFNVSTPLIIKW++ +S
Sbjct: 131 DDPPNLHIIGNLPFNVSTPLIIKWLEQMSN 160
>gi|432940023|ref|XP_004082679.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Oryzias latipes]
Length = 343
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 109/151 (72%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
+ RLPP+P++ ++IKLY LRA KQLSQNFL + RLTDKIVR AG + VCEVGPGPG
Sbjct: 9 SFRLPPLPTVGELIKLYNLRAEKQLSQNFLLDLRLTDKIVRQAGCLNNAHVCEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L +L++A+P + GD++++ M F D +
Sbjct: 69 ITRSILNAGAADLLVVEKDSRFIPGLKLLSEAAPGKLRIVHGDILTYRMDRGFPTDISKP 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPF+VSTPLIIKW++ ++
Sbjct: 129 WDQEPPNLHIIGNLPFSVSTPLIIKWLENVA 159
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 159 LFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
LFP+ +R +L +++ A V P+LRP +LS+ + AY +C PGL Y +
Sbjct: 267 LFPEARRAELTQEMMQEADVDPLLRPTELSIPHIQALADAYAGLCRREPGLLSYEFRE 324
>gi|354466970|ref|XP_003495944.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like,
partial [Cricetulus griseus]
Length = 329
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 105/144 (72%)
Query: 12 PSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILN 71
P+IR+IIKL+ LRA+KQLSQNFL + RLTDKIVR AG + G V EVGPGPG ITRSILN
Sbjct: 1 PTIREIIKLFGLRAVKQLSQNFLLDLRLTDKIVRKAGNLAGVYVYEVGPGPGGITRSILN 60
Query: 72 RRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
A L+++EKD RF P L ML+ A+P + GDV+++ ++ F RR W + P
Sbjct: 61 ANIAELLVVEKDTRFIPGLQMLSDAAPGRLRIVHGDVLTYKIEKAFPNHVRRQWEDDPPN 120
Query: 132 IRIIGNLPFNVSTPLIIKWIQAIS 155
+ IIGNLPF+VSTPLIIKW++ +S
Sbjct: 121 VHIIGNLPFSVSTPLIIKWLENVS 144
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFPK +R + LL+ A + P LRP LS+ F +C YR MC+E P L+ Y +
Sbjct: 250 GMLFPKAQRLENTGKLLQLADIDPTLRPIHLSLMHFKSLCDVYRKMCDEDPQLFTYNFRE 309
>gi|62858143|ref|NP_001016494.1| dimethyladenosine transferase 1, mitochondrial [Xenopus (Silurana)
tropicalis]
gi|123893272|sp|Q28HM1.1|TFB1M_XENTR RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
AltName: Full=Mitochondrial transcription factor B1;
Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
Precursor
gi|89272950|emb|CAJ83142.1| transcription factor B1, mitochondrial [Xenopus (Silurana)
tropicalis]
gi|213624236|gb|AAI70821.1| transcription factor B1, mitochondrial [Xenopus (Silurana)
tropicalis]
gi|213624254|gb|AAI70849.1| transcription factor B1, mitochondrial [Xenopus (Silurana)
tropicalis]
Length = 346
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/150 (54%), Positives = 107/150 (71%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+I +IIKL+ LRA KQLSQNFL + +LTDKIVR AG + VCEVGPGPG IT
Sbjct: 11 RLPPLPTIGEIIKLFNLRAEKQLSQNFLLDLKLTDKIVRKAGNLQNAYVCEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN L+++EKD RF P L ML +AS V GD++++ M F + ++ W
Sbjct: 71 RSILNAGVEELLVVEKDTRFIPGLKMLNEASSGKVQIVHGDILTYRMDRAFPKHLKKPWD 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+ P + IIGNLPF+VSTPLIIKW++ +++
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLEQLAD 160
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
++LFP+ R + +L A V P LRP +L++ F ++C YR+MC++ P L+ Y +
Sbjct: 265 SILFPEESRLKCTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCDQNPNLFAYNFRE 324
Query: 216 TPGDIEPEAVAEQEGEGDEI 235
+ + +EGE D++
Sbjct: 325 ELRMRKLQGKTTEEGEEDDL 344
>gi|169642197|gb|AAI60475.1| tfb1m protein [Xenopus (Silurana) tropicalis]
Length = 346
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/150 (54%), Positives = 107/150 (71%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+I +IIKL+ LRA KQLSQNFL + +LTDKIVR AG + VCEVGPGPG IT
Sbjct: 11 RLPPLPTIGEIIKLFNLRAEKQLSQNFLLDLKLTDKIVRKAGNLQNAYVCEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN L+++EKD RF P L ML +AS V GD++++ M F + ++ W
Sbjct: 71 RSILNAGVEELLVVEKDTRFIPGLKMLNEASSGKVQIVHGDILTYRMDRAFPKHLKKPWD 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+ P + IIGNLPF+VSTPLIIKW++ +++
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLEQLAD 160
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
++LFP+ R + +L A V P LRP +L++ F ++C YR+MC++ P L+ Y +
Sbjct: 265 SILFPEESRLKCTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCDQNPNLFAYNFRE 324
Query: 216 TPGDIEPEAVAEQEGEGDEI 235
+ + +EGE D++
Sbjct: 325 ELRMRKLQGKTTEEGEEDDL 344
>gi|322800097|gb|EFZ21203.1| hypothetical protein SINV_11803 [Solenopsis invicta]
Length = 353
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 117/156 (75%), Gaps = 3/156 (1%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
A RLPP+P+IRDI+K+Y+L A+K+LSQNFL + LTDKI++ AG + G++V E+GPGPG
Sbjct: 3 APRLPPLPTIRDILKIYRLNAIKRLSQNFLMDHNLTDKIIKKAGNLAGSQVLEIGPGPGG 62
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC---PVHFHLGDVMSFTMQNMFSEDR 121
+TRSIL R P RLV++EKD RF P L+MLA++ + ++++ ++++F E++
Sbjct: 63 LTRSILRRVPERLVVVEKDERFKPTLEMLAESFSAINGKMDIIYDNILNTNIESLFPEEK 122
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISEN 157
+R W++ P I +IGNLPF++ST LIIKW+ AI+E
Sbjct: 123 KRTWNDKPPDIFLIGNLPFSLSTHLIIKWLHAIAEQ 158
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 159 LFPKHK-RQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMP--GLYEY 211
LFPK + + L + + + A ++P LRP QL+V+E ++ AY+ + E+ P L+EY
Sbjct: 264 LFPKERCKDLGLMMYKLADLEPTLRPTQLTVEEVDRLATAYKYLLEKHPELELFEY 319
>gi|390362918|ref|XP_791286.3| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 316
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 108/150 (72%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+IR+II+LY LRA K L+QNFL + +LTDKIVR AG + G VCEVGPGPG IT
Sbjct: 5 RLPPLPTIREIIRLYGLRAEKHLAQNFLLDLKLTDKIVRQAGNLQGAHVCEVGPGPGGIT 64
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSI+NR L++IEKD RF P L+ML +A+ V D++ + + F ++DW
Sbjct: 65 RSIINRGVQDLLVIEKDTRFIPSLEMLTEATEGRVRVACDDILRVNLADAFPHHIKKDWK 124
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+ P + I+GNLPFNVS PL+++W++++++
Sbjct: 125 DDPPNLHIVGNLPFNVSLPLMLRWLESVAD 154
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 33/54 (61%)
Query: 159 LFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYT 212
LFP ++ L + + + V P RP L+++EF +C++Y+++ + +P ++ Y
Sbjct: 261 LFPVERQDLTQEVFDTSGVDPTQRPVWLTMEEFNALCMSYKNIIQRIPAMFHYN 314
>gi|340709435|ref|XP_003393315.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Bombus terrestris]
Length = 341
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 108/156 (69%), Gaps = 3/156 (1%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
LRLPP+PS++D++++Y+L A+KQLSQNF+ + L+DKI+R G ++ V EVGPGPG
Sbjct: 3 TLRLPPLPSMKDLLRMYRLHAMKQLSQNFILDQNLSDKIIRKTGNLSDCHVLEVGPGPGG 62
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC---PVHFHLGDVMSFTMQNMFSEDR 121
+TRSIL +P +++++EKD RF P L+MLA A + D+M F M N+
Sbjct: 63 LTRSILKHQPNKVIVVEKDKRFEPTLEMLADAFAAVNGNMEIIFDDIMRFNMTNVLPRTE 122
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISEN 157
+ W++ P IR+IGNLPFN+STPLIIKW+ A+ E
Sbjct: 123 TKAWTDKSPRIRLIGNLPFNISTPLIIKWLHAVCEK 158
>gi|147904625|ref|NP_001079850.1| dimethyladenosine transferase 1, mitochondrial [Xenopus laevis]
gi|82188081|sp|Q7T0W5.1|TFB1M_XENLA RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
AltName: Full=Mitochondrial transcription factor B1;
Short=mtTFB1; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
Precursor
gi|33417098|gb|AAH56010.1| MGC68924 protein [Xenopus laevis]
Length = 344
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 107/155 (69%)
Query: 2 AAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPG 61
A RLPP+P+I +I+KL+ LRA KQLSQNFL + +LTDKIVR AG + VCEVGPG
Sbjct: 6 ALAKFRLPPLPTIGEIVKLFNLRAEKQLSQNFLLDLKLTDKIVRRAGNLQNAYVCEVGPG 65
Query: 62 PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR 121
PG ITRSILN L+++EKD RF P L ML +AS V GD++++ M F +
Sbjct: 66 PGGITRSILNAGVEELLVVEKDTRFIPGLKMLNEASGGKVRTVHGDILTYRMDRAFPKHL 125
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+ W + P + IIGNLPF+VSTPLIIKW++ +++
Sbjct: 126 IKSWDDEPPNVHIIGNLPFSVSTPLIIKWLEQVAD 160
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
++LFP+ R QL +L A V P LRP +L++ F ++C YR+MC++ P L+ Y +
Sbjct: 265 SILFPEEIRIQLTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCDQNPHLFSYNYRE 324
>gi|348517483|ref|XP_003446263.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Oreochromis niloticus]
Length = 358
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 109/151 (72%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
+ RLPP+P++ ++IKLY LRA KQLSQNFL + RLTDKIVR AG++ VCEVGPGPG
Sbjct: 9 SFRLPPLPTVGELIKLYNLRAEKQLSQNFLLDLRLTDKIVRQAGSLRDAHVCEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
+TRSILN A L+++EKD RF P L +L++A+P + GD++++ + F + +
Sbjct: 69 LTRSILNAGAADLLVVEKDTRFIPGLKLLSEAAPGRLRIVHGDILTYRLDRGFPTNISKP 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W P + IIGNLPF+VSTPLIIKW++ ++
Sbjct: 129 WEGDPPNLHIIGNLPFSVSTPLIIKWLENVA 159
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 159 LFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
LFP+ R +L ++++A V PILRP +L++ +F + AY +CE P L Y +
Sbjct: 267 LFPEACRVELTQEMMQKADVDPILRPTELTIPQFRALADAYAHLCEHEPALLAYEFRE 324
>gi|170043732|ref|XP_001849529.1| mitochondrial dimethyladenosine transferase 1 [Culex
quinquefasciatus]
gi|167867055|gb|EDS30438.1| mitochondrial dimethyladenosine transferase 1 [Culex
quinquefasciatus]
Length = 345
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 112/157 (71%), Gaps = 2/157 (1%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
+A RLPP+P+IRD+++LYKLRA+KQLSQNFL + RLT+KIV+ AG IT + V EVGP
Sbjct: 10 IAGTGARLPPLPTIRDLVRLYKLRAIKQLSQNFLMDERLTNKIVKAAGNITDHHVLEVGP 69
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHL--GDVMSFTMQNMFS 118
GPGSITRSI+ + P LV++EKD RF P L++L++AS + + GD++ F + F
Sbjct: 70 GPGSITRSIIRKAPRHLVVVEKDRRFLPTLELLSEASAGFLRMDIVRGDILQFQTEQAFP 129
Query: 119 EDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ R++W + + IIGNLPF +ST L+I W+ +S
Sbjct: 130 DCPRQEWHDKRAPVHIIGNLPFAISTRLLINWLHEMS 166
>gi|328792787|ref|XP_001121333.2| PREDICTED: dimethyladenosine transferase 1, mitochondrial [Apis
mellifera]
Length = 343
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 107/155 (69%), Gaps = 3/155 (1%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
+RLPP+PSI+D++K+Y+LRA+K+LSQNF+ L DKI++ G + V E+GPGPG+
Sbjct: 3 TIRLPPLPSIKDVLKIYRLRAMKELSQNFILNQNLADKIIKKTGNLNDCHVLEIGPGPGA 62
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC---PVHFHLGDVMSFTMQNMFSEDR 121
+TRSIL +P +L+++EKD RF P L+MLA A + D+M M N+F
Sbjct: 63 LTRSILKCQPKKLIVVEKDKRFEPTLEMLADAFETINGKMEIIFDDIMKINMSNLFPSTE 122
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+ W+E P I++IGNLPFNVSTPLIIK + AISE
Sbjct: 123 IKAWTEKCPRIKLIGNLPFNVSTPLIIKLLHAISE 157
>gi|350420423|ref|XP_003492503.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Bombus impatiens]
Length = 341
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 107/155 (69%), Gaps = 3/155 (1%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
LRLPP+PSI++++K+YKL A+KQLSQNF+ + L+DKI+R G ++ V EVGPGPG
Sbjct: 3 TLRLPPLPSIKNLLKIYKLHAVKQLSQNFILDQNLSDKIIRKTGNLSDCHVLEVGPGPGG 62
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC---PVHFHLGDVMSFTMQNMFSEDR 121
+TRSIL +P +++++EKD RF P L+MLA A + D+M F M +
Sbjct: 63 LTRSILKHQPNKVIVVEKDKRFEPTLEMLADAFAAVNGNMEIIFDDIMRFNMTTVLPRTE 122
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+ W++ P IR+IGNLPFN+STPLIIKW+ A+ E
Sbjct: 123 AKAWTDKNPRIRLIGNLPFNISTPLIIKWLHAVCE 157
>gi|328909245|gb|AEB61290.1| dimethyladenosine transferase 1 mitochondrial-like protein, partial
[Equus caballus]
Length = 329
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/139 (57%), Positives = 102/139 (73%)
Query: 17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPAR 76
IIKL++L A+KQLSQNFL + RLTDKIVR AGT+T V EVGPGPG ITRSILN A
Sbjct: 1 IIKLFRLHAVKQLSQNFLLDLRLTDKIVRKAGTLTNAYVYEVGPGPGGITRSILNAGVAE 60
Query: 77 LVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIG 136
L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R W + P + IIG
Sbjct: 61 LLVVEKDSRFLPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRHWEDDPPNVHIIG 120
Query: 137 NLPFNVSTPLIIKWIQAIS 155
NLPF+VSTPLIIKW++ +S
Sbjct: 121 NLPFSVSTPLIIKWLENVS 139
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LL+ + V P LRP QLSV F +C YR MC+E P L+ Y +
Sbjct: 245 GMLFPEAQRVESTGKLLQLSDVDPTLRPSQLSVSHFKSLCDVYRKMCDEDPHLFAYNFRE 304
Query: 216 TPGDIE 221
I+
Sbjct: 305 NSSKIK 310
>gi|332019925|gb|EGI60385.1| Dimethyladenosine transferase 1, mitochondrial [Acromyrmex
echinatior]
Length = 351
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 112/155 (72%), Gaps = 3/155 (1%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
A RLPP+P+IRDI+KLY L A+K+LSQNFL + LT KIV AG I+G +V EVGPGPG
Sbjct: 3 APRLPPLPTIRDILKLYNLSAIKRLSQNFLLDENLTKKIVAKAGNISGGQVLEVGPGPGG 62
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQ---ASPCPVHFHLGDVMSFTMQNMFSEDR 121
+TRSIL + P RLV++EKD RF P L+MLA A + D++ ++++F ++
Sbjct: 63 LTRSILKKTPERLVVVEKDKRFKPTLEMLADSFGAINGKMDIIYDDILKTNIESLFPLEK 122
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+R+W++ P I +IGNLPF++ST LII+W+ AISE
Sbjct: 123 KRNWNDKPPDIFVIGNLPFSLSTHLIIQWLHAISE 157
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 159 LFPK-HKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
LFPK H++ L + + + A ++P L+P QL++++ ++ AY+ + E+ P L Y +
Sbjct: 264 LFPKEHRKDLGLMMYKLADLEPTLKPTQLTIEDINKLATAYKYLLEKHPELKLYNYRSS 322
>gi|350596263|ref|XP_003484249.1| PREDICTED: mitochondrial dimethyladenosine transferase 1-like,
partial [Sus scrofa]
Length = 222
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 110/168 (65%), Gaps = 1/168 (0%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P L+A+KQLSQNFL + RLTDKIVR AG++T V EVGPGPG
Sbjct: 9 TFRLPPLPXXXXXXXXXXLQAVKQLSQNFLLDLRLTDKIVRKAGSLTNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNAGIAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE-NLLFPKHKRQLVVSL 171
W + P + IIGNLPF+VSTPLIIKW++ +S N F + Q+ ++
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENVSHRNGPFAYGRTQMTLTF 176
>gi|312372402|gb|EFR20370.1| hypothetical protein AND_20209 [Anopheles darlingi]
Length = 353
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 113/158 (71%), Gaps = 3/158 (1%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
+A+ +RLPP+P+IRD++KLY+LRA+KQLSQNFL + RLTDKIVR AG I + V EVGP
Sbjct: 11 LASSGIRLPPLPTIRDLVKLYQLRAIKQLSQNFLMDERLTDKIVRAAGKIRDHHVLEVGP 70
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHL--GDVMSFTMQNMFS 118
GPG ITRSI+ + P LV++EKD RF P ++MLA+ S + + GD++ + ++ F
Sbjct: 71 GPGGITRSIIRQHPRHLVVVEKDRRFMPTMEMLAEVSQPFMRMDIVRGDILDYRIEGAFP 130
Query: 119 EDRRRDWSEGLPG-IRIIGNLPFNVSTPLIIKWIQAIS 155
+ DW + +P + +IGNLPF +ST L+I W++ +S
Sbjct: 131 DCEPHDWMDPVPAPVHLIGNLPFAISTRLLINWLRDMS 168
>gi|157123560|ref|XP_001660203.1| dimethyladenosine transferase [Aedes aegypti]
gi|108874371|gb|EAT38596.1| AAEL009534-PA [Aedes aegypti]
Length = 339
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 125/200 (62%), Gaps = 6/200 (3%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
+ RLPP+P+IRD+++LYKLRALKQLSQNFL + RLT+KIVR AG I N V EVGP
Sbjct: 10 LVKSGARLPPLPTIRDLVRLYKLRALKQLSQNFLMDERLTNKIVRAAGNIKDNYVLEVGP 69
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHL--GDVMSFTMQNMFS 118
GPG ITRSI+ + P +LV++EKD RF P L++LA+AS + + GD++ + + F
Sbjct: 70 GPGGITRSIIRKFPHQLVVVEKDRRFLPTLELLAEASKDFLQMDIVRGDILEYRTEMAFP 129
Query: 119 EDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERAC-- 176
+ + +W++ + +IGNLPF +ST L+I WI+ +S + R + ++
Sbjct: 130 DCPKTEWNDKRAPVHLIGNLPFAISTRLLINWIREMSLRSGAWSYGRSSLTLTFQKEVAE 189
Query: 177 --VKPILRPYQLSVQEFGQI 194
V PIL Y+ + Q+
Sbjct: 190 RIVAPILSEYRCRLSVMNQV 209
>gi|47219520|emb|CAG09874.1| unnamed protein product [Tetraodon nigroviridis]
Length = 286
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 109/182 (59%), Gaps = 30/182 (16%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
LRLPP+P++ ++IKLY LRA KQLSQNFL + +LTDKIVR AG + G VCEVGPGPG +
Sbjct: 10 LRLPPLPTVGELIKLYNLRAEKQLSQNFLLDLKLTDKIVRQAGCLKGAHVCEVGPGPGGL 69
Query: 66 TRSILNRRPARLVLIEKDPRF------------------------------TPCLDMLAQ 95
TRSILN A L+++EKD RF P L +L++
Sbjct: 70 TRSILNAGAADLLVVEKDSRFIPGLKVKLAAGTASSRLFVQPSRCDGVAFNIPVLQLLSE 129
Query: 96 ASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
A+P + GD++++ M F + W E P + +IGNLPFNVSTPLIIKW++ I+
Sbjct: 130 AAPGRLRIVHGDILTYRMDRGFLGMTSKTWQEDPPNLHVIGNLPFNVSTPLIIKWLENIA 189
Query: 156 EN 157
Sbjct: 190 NQ 191
>gi|443683944|gb|ELT88025.1| hypothetical protein CAPTEDRAFT_126486 [Capitella teleta]
Length = 330
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 105/152 (69%), Gaps = 1/152 (0%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAG-TITGNEVCEVGPGPGS 64
+ LPP+P+IR+II++YKL ++K+LSQNFL + +T K+VR+ G +TG VCEVGPGPGS
Sbjct: 1 MHLPPLPTIREIIRIYKLGSIKRLSQNFLLDTNITHKLVRSMGRNLTGAHVCEVGPGPGS 60
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITR +L L +IE D RF P L +L++AS + + GDV+ F +F + R
Sbjct: 61 ITRPLLEAGVEHLSVIELDKRFIPSLQLLSKASGSRMSIYHGDVLRFNFDQIFPDTLSRP 120
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
W E P I I+GNLPF VSTPLII+W+ AI++
Sbjct: 121 WEEHPPKIHIVGNLPFGVSTPLIIRWMNAIAD 152
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 159 LFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
LFP + + ++ A + P R +QL++ EF ++C AY ++C + PG+ +Y D
Sbjct: 259 LFPPEQVSMPKEMIALAEIDPETRSFQLTIDEFSRLCGAYMEICRKNPGIIDYYFRD 315
>gi|260818308|ref|XP_002604325.1| hypothetical protein BRAFLDRAFT_125270 [Branchiostoma floridae]
gi|229289651|gb|EEN60336.1| hypothetical protein BRAFLDRAFT_125270 [Branchiostoma floridae]
Length = 1177
Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 118/200 (59%), Gaps = 7/200 (3%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
+IRDI+KLY+L A KQLSQNFLF+ LTDKIV++AG + G VCEVGPGPG ITRSIL
Sbjct: 25 TIRDIVKLYRLNAAKQLSQNFLFDTNLTDKIVKSAGNLEGAYVCEVGPGPGGITRSILKA 84
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
A++V++E D RF L +L+ A+P V D++++ + D W P +
Sbjct: 85 GAAKVVVVELDKRFNAGLRLLSAAAPGRVEIVNADILTYNLAKALPLDLAVPWEGDPPNV 144
Query: 133 RIIGNLPFNVSTPLIIKWIQAIS-ENLLFPKHKRQLVVS----LLERACVKPILRPYQLS 187
IIGNLPFNVSTPLII+W++A++ F + QL ++ + ER C P R Q S
Sbjct: 145 HIIGNLPFNVSTPLIIRWLEALALRTGPFVYGRTQLTLTFQKEVCERICAPP--RSSQRS 202
Query: 188 VQEFGQICLAYRDMCEEMPG 207
L C +PG
Sbjct: 203 RLSIMSQYLCRVKHCFRIPG 222
>gi|118792585|ref|XP_320403.3| AGAP012129-PA [Anopheles gambiae str. PEST]
gi|116116968|gb|EAA00207.3| AGAP012129-PA [Anopheles gambiae str. PEST]
Length = 424
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 109/158 (68%), Gaps = 3/158 (1%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
+ + +RLPP+P+IRD++KLY+LRA+KQLSQNFL + RLTDKIVR AG I + V EVGP
Sbjct: 95 LTSTGIRLPPLPTIRDLVKLYQLRAIKQLSQNFLMDERLTDKIVRAAGNIRDHYVLEVGP 154
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHL--GDVMSFTMQNMFS 118
GPG ITRSI+ + P LV++EKD RF P ++MLA+ + + + GD++ + + F
Sbjct: 155 GPGGITRSIIRQNPRHLVVVEKDRRFMPTMEMLAEVAQPFMRMDIVQGDILDYRVAEAFP 214
Query: 119 EDRRRDWSEGLPG-IRIIGNLPFNVSTPLIIKWIQAIS 155
+ DW + + +IGNLPF +ST L+I W++ +S
Sbjct: 215 DCPPHDWMDRKRAPVHLIGNLPFAISTRLLINWLRDMS 252
>gi|196005549|ref|XP_002112641.1| hypothetical protein TRIADDRAFT_24833 [Trichoplax adhaerens]
gi|190584682|gb|EDV24751.1| hypothetical protein TRIADDRAFT_24833 [Trichoplax adhaerens]
Length = 319
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 124/204 (60%), Gaps = 4/204 (1%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
+RLPP+P+IRD+IKL+ L A KQLSQNFL +T+KIV G + ++VCEVG GPG +
Sbjct: 2 IRLPPLPTIRDLIKLHNLSASKQLSQNFLLNSNITNKIVLLDGGVENHQVCEVGAGPGCL 61
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TRSI+ +++V +EKD RF P LD+LA A + D++++ M F ++ W
Sbjct: 62 TRSIIAGGASKIVAVEKDRRFLPALDILANAVDGRMVIVYADILNYEMIKAFDPVDKKAW 121
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLL-FPKHKRQLVVSLLERACVKPILRPY 184
++ P ++IIGNLPF++STPL+I+W+ IS+N F + ++ ++ E + + P
Sbjct: 122 NDESPKMKIIGNLPFSISTPLLIQWLNLISQNAGPFSLGRIKMTLTFQEEVAQRILAEP- 180
Query: 185 QLSVQEFGQICLAYRDMCEEMPGL 208
+ ++ + ++ C PG
Sbjct: 181 --KTSQRSRLSIMTQNYCHVKPGF 202
>gi|194869297|ref|XP_001972426.1| GG15524 [Drosophila erecta]
gi|190654209|gb|EDV51452.1| GG15524 [Drosophila erecta]
Length = 502
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 107/155 (69%), Gaps = 12/155 (7%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPG 63
+RLPPMP+IR+++KLY+L+A KQLSQNFL + RLTDKIV++AG I + V EVGPGPG
Sbjct: 184 GMRLPPMPTIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDSRDLVLEVGPGPG 243
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPCPVHF--HLGDVMSFTMQNMFSED 120
ITRSIL R P RL+L+EKDPRF L +L + ASP + F H D++ F M+ +
Sbjct: 244 GITRSILRRHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNMEQHIPDT 303
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+R I +IGNLPF +ST L+I W++ ++
Sbjct: 304 SQR--------IHLIGNLPFAISTRLLINWLEDLA 330
>gi|195440550|ref|XP_002068104.1| GK10486 [Drosophila willistoni]
gi|194164189|gb|EDW79090.1| GK10486 [Drosophila willistoni]
Length = 334
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 106/157 (67%), Gaps = 12/157 (7%)
Query: 3 AKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPG 61
+RLPP+P+IRD++KLYKL+A+KQLSQNFL + RLTDKIV++AGTI + V EVGPG
Sbjct: 10 TSGMRLPPLPTIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGTIDRRDIVLEVGPG 69
Query: 62 PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHLGDVMSFTMQNMFS 118
PG ITRSIL R+P RL+L+EKDPRF LD+L + + V + D++ F M S
Sbjct: 70 PGGITRSILRRQPQRLILVEKDPRFRETLDLLKECARPLDIQVDIYHEDILRFNMDQHIS 129
Query: 119 EDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ +R + +IGNLPF +ST L+I W +S
Sbjct: 130 DTTQR--------LHLIGNLPFAISTRLLINWYADLS 158
>gi|195326894|ref|XP_002030159.1| GM25292 [Drosophila sechellia]
gi|194119102|gb|EDW41145.1| GM25292 [Drosophila sechellia]
Length = 414
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 106/155 (68%), Gaps = 12/155 (7%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPG 63
+RLPPMP+IR+++KLY+L+A KQLSQNFL + RLTDKIV++AG I + V EVGPGPG
Sbjct: 96 GMRLPPMPTIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDPKDLVLEVGPGPG 155
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPCPVHF--HLGDVMSFTMQNMFSED 120
ITRSIL R P RL+L+EKDPRF L +L + ASP + F H D++ F M+ +
Sbjct: 156 GITRSILRRHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNMEQHIPDT 215
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+R I +IGNLPF +ST L+I W+ ++
Sbjct: 216 SQR--------IHLIGNLPFAISTRLLINWLDDLA 242
>gi|198433957|ref|XP_002130387.1| PREDICTED: similar to transcription factor B1, mitochondrial [Ciona
intestinalis]
Length = 384
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 118/197 (59%), Gaps = 3/197 (1%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVR-NAGTITGNEVCEVGPGPGSIT 66
+PPMP+ +++K+Y +RA KQLSQNFL +P +T++ V A + G+ VCEVGPGPG IT
Sbjct: 26 IPPMPTSSELLKMYNVRARKQLSQNFLLDPLITNRFVLCGAKDLAGHHVCEVGPGPGPIT 85
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSIL R+P RL ++EKD RF P L +A S + GD++ + + F ++ +DW
Sbjct: 86 RSILQRKPERLTVVEKDHRFLPMLKYVADVSNDRMTIVHGDILKYDLSQCFPQELAKDWH 145
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQL 186
+ P + GNLPFNVS PLI KW + IS K R +V +R V+ L Q
Sbjct: 146 KASPPFIVFGNLPFNVSLPLIFKWFEQISRKDGMFKLGRIPLVLTFQREVVERFLA--QT 203
Query: 187 SVQEFGQICLAYRDMCE 203
++ ++ ++ ++ C+
Sbjct: 204 GDKQRCRLSVSAQNFCD 220
>gi|241248269|ref|XP_002402915.1| dimethyladenosine transferase, putative [Ixodes scapularis]
gi|215496424|gb|EEC06064.1| dimethyladenosine transferase, putative [Ixodes scapularis]
Length = 382
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 109/148 (73%)
Query: 9 PPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRS 68
PP+P++RD++++Y++RA++QLSQNFL +P+LT ++V+ AG I + V EVGPGPG +TR
Sbjct: 69 PPLPTVRDLLRMYRIRAMRQLSQNFLMDPKLTRRLVKAAGKIRDHHVIEVGPGPGCLTRP 128
Query: 69 ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128
+L ++V+IEKDPRF P L +LA+A+ + +GDV +++M+++ ++ W
Sbjct: 129 LLELGARQVVVIEKDPRFLPSLQLLAEAADNRLKIIMGDVFNYSMEDLIPQELGVPWEGP 188
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQAISE 156
P + ++GNLPF+VSTPL+++W++ S+
Sbjct: 189 PPPVHVVGNLPFSVSTPLLVRWLRMASQ 216
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 159 LFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTL 213
LFP L L++ + P R QL+V+E G+IC Y C E LYEY
Sbjct: 323 LFPSRHLDLAKDLVKLVEIDPQTRVVQLTVEEVGRICQVYEHFCLEDAKLYEYNF 377
>gi|195128817|ref|XP_002008857.1| GI13722 [Drosophila mojavensis]
gi|193920466|gb|EDW19333.1| GI13722 [Drosophila mojavensis]
Length = 413
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 107/157 (68%), Gaps = 12/157 (7%)
Query: 3 AKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPG 61
+ +RLPP+PSIRD++KLYKL+A+KQLSQNFL + RLTDKIV++AG I N+ V EVGPG
Sbjct: 94 SSGMRLPPLPSIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDHNDIVLEVGPG 153
Query: 62 PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPC--PVHFHLGDVMSFTMQNMFS 118
PG ITRSIL R+P RL+L+EKD RFT L +L + A P V + D++ F ++
Sbjct: 154 PGGITRSILRRQPQRLLLVEKDARFTETLQLLRECARPLDMEVEIYHEDILRFNIEQHVP 213
Query: 119 EDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ +R + +IGNLPF +ST L+I W +S
Sbjct: 214 DTTQR--------LHLIGNLPFAISTRLLINWFDDLS 242
>gi|21357273|ref|NP_648499.1| mitochondrial transcription factor B1 [Drosophila melanogaster]
gi|74870888|sp|Q9VTM5.2|TFB1M_DROME RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
AltName: Full=Mitochondrial transcription factor B1;
AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase 1; AltName:
Full=d-mtTFB1; Flags: Precursor
gi|17862606|gb|AAL39780.1| LD40326p [Drosophila melanogaster]
gi|23093638|gb|AAF50022.2| mitochondrial transcription factor B1 [Drosophila melanogaster]
gi|220946184|gb|ACL85635.1| mtTFB1-PA [synthetic construct]
gi|220955884|gb|ACL90485.1| mtTFB1-PA [synthetic construct]
Length = 330
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/155 (50%), Positives = 106/155 (68%), Gaps = 12/155 (7%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPG 63
+RLPPMP+IR+++KLY+L+A KQLSQNFL + RLTDKIV++AG I + V EVGPGPG
Sbjct: 12 GMRLPPMPTIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDPRDLVLEVGPGPG 71
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPCPVHF--HLGDVMSFTMQNMFSED 120
ITRSIL R P RL+L+EKDPRF L +L + ASP + F H D++ F ++ +
Sbjct: 72 GITRSILRRHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNIEQHIPDT 131
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+R I +IGNLPF +ST L+I W+ ++
Sbjct: 132 SQR--------IHLIGNLPFAISTRLLINWLDDLA 158
>gi|405963269|gb|EKC28858.1| Dimethyladenosine transferase 1, mitochondrial [Crassostrea gigas]
Length = 267
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 122/245 (49%), Gaps = 40/245 (16%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
MP I +I+KLY+L A K+LSQNFL + + K V G+ +CEVGPGPG ITR++L
Sbjct: 1 MPRISEIVKLYRLSATKKLSQNFLLDMNVCHKFVNCISVTKGSHICEVGPGPGGITRALL 60
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ +IEKD RF P L+ L AS + HLGD F M ++F R W + P
Sbjct: 61 ESDAEKVHVIEKDKRFLPPLEALRAASGGRLDVHLGDAKYFDMHSLFPPYCARPWQKMTP 120
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENL-------------------------------- 158
+ I+GNLPFNVS L++KW++ IS+
Sbjct: 121 KVNIVGNLPFNVSLGLLLKWLEQISKKSGPWQLGRVPLTLTFQHEVAERILADVDSEHRC 180
Query: 159 --------LFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYE 210
LFP LV + + V P + ++LS++E+ ++C AY +C PGL +
Sbjct: 181 RLSIMSQDLFPPIMSNLVDDFFKISRVDPTKQSFRLSMEEWRELCHAYEQLCLLNPGLID 240
Query: 211 YTLED 215
Y +
Sbjct: 241 YNYRE 245
>gi|195016027|ref|XP_001984325.1| GH15074 [Drosophila grimshawi]
gi|193897807|gb|EDV96673.1| GH15074 [Drosophila grimshawi]
Length = 415
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 109/157 (69%), Gaps = 12/157 (7%)
Query: 3 AKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPG 61
+ +RLPP+P+IRD++KLYKL+A+KQLSQNFL + RLTDKIV++AG I + V EVGPG
Sbjct: 94 SSGVRLPPLPTIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPG 153
Query: 62 PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPC--PVHFHLGDVMSFTMQNMFS 118
PG ITRSIL R+P RL+L+EKD RFT L +L + ASP V + D++ F ++
Sbjct: 154 PGGITRSILRRQPQRLILVEKDARFTETLQLLRECASPLQMQVDIYHEDILRFNIEKHVP 213
Query: 119 EDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ +R + +IGNLPF++ST L+I W + ++
Sbjct: 214 DTAQR--------LHLIGNLPFSISTRLLINWYEDLA 242
>gi|391348349|ref|XP_003748410.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Metaseiulus occidentalis]
Length = 345
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 109/156 (69%), Gaps = 2/156 (1%)
Query: 2 AAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPG 61
+K +RLPP+P+ ++++LY+L+ALKQ+SQNFL +PR+ K++R+AG + V EVGPG
Sbjct: 10 VSKKVRLPPLPTPAELLRLYRLKALKQMSQNFLLDPRICRKLIRSAGNLHKAHVIEVGPG 69
Query: 62 PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR 121
PG++TR IL A +IEKD RF PCLD+LA+A+ + GDV+++ + + +
Sbjct: 70 PGNLTRPILELG-ATCSVIEKDLRFMPCLDLLAEAAEGRLKVIHGDVLTYPIHSEIPPEL 128
Query: 122 RRDW-SEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
R W SE P I +IGNLPF +ST L++KW++ ISE
Sbjct: 129 ARPWESEKPPRIHLIGNLPFAISTVLLVKWLKEISE 164
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 171 LLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYT 212
+LE+A + P + L+ QEF ++C Y + CE++ GLYEY
Sbjct: 284 VLEKAELDPKEQTLMLTTQEFSRLCDVYAEYCEKVAGLYEYN 325
>gi|83032434|gb|ABB97063.1| mitochondrial transcription factor B-like protein [Acanthamoeba
castellanii]
Length = 307
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 124/198 (62%), Gaps = 4/198 (2%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
L+LPPMP+ R++++LY+L A+K+LSQNF+ + +TDK+ R AG + G+ V EVGPGPGS+
Sbjct: 2 LKLPPMPTPRELVRLYRLSAVKELSQNFILDLNVTDKLARAAGPLRGSTVIEVGPGPGSL 61
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF-SEDRRRD 124
TRS+L +++++EKD RF P L+ L QAS + GD++ +++ +E + +
Sbjct: 62 TRSLLTNGARKVIVVEKDKRFMPALETLQQASGGRLELVFGDMLKIDERDLLKNEPKAEN 121
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY 184
W++ P +RI+GNLPF V+T L++KW++ I E H R + + + K I
Sbjct: 122 WADESP-VRIVGNLPFAVATELLLKWLRQIPEREGPFAHGRASMTLMFQLEVGKRI--EA 178
Query: 185 QLSVQEFGQICLAYRDMC 202
+ E+G++ + + C
Sbjct: 179 RSGTSEYGRLSVMTQQSC 196
>gi|289739481|gb|ADD18488.1| mitochondrial transcription factor [Glossina morsitans morsitans]
Length = 334
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 106/155 (68%), Gaps = 12/155 (7%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVC-EVGPGPG 63
LRLPP+P++RDI+KLY LRA+KQLSQNFL + RLTDKIV+ G I +V EVGPGPG
Sbjct: 12 GLRLPPLPTLRDIVKLYNLRAVKQLSQNFLMDERLTDKIVKQCGRIDSKDVVLEVGPGPG 71
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPCPVHFHL--GDVMSFTMQNMFSED 120
ITRSI+ R P +V++EKD RF P L++L + +P + + D+++F ++N +
Sbjct: 72 GITRSIIRREPKHIVVVEKDARFLPTLELLRECVAPLNIQMQIFVDDILTFNIENHLPDI 131
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+R + +IGNLPF++ST L+I W++ +S
Sbjct: 132 TQR--------LHLIGNLPFSISTRLLINWLEDVS 158
>gi|195379696|ref|XP_002048613.1| GJ14068 [Drosophila virilis]
gi|194155771|gb|EDW70955.1| GJ14068 [Drosophila virilis]
Length = 420
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 105/155 (67%), Gaps = 12/155 (7%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPG 63
+RLPP+PSIRD++KLYKL+A+KQLSQNFL + RLTDKIV+ AG I + V EVGPGPG
Sbjct: 96 GVRLPPLPSIRDLVKLYKLQAMKQLSQNFLMDERLTDKIVKAAGRIDPRDIVLEVGPGPG 155
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPCPVHFHL--GDVMSFTMQNMFSED 120
ITRSIL R+P RL+L+EKD RFT L +L + A P V + D++ F ++ +
Sbjct: 156 GITRSILRRQPQRLMLVEKDARFTETLQLLRECARPLNVQVDIYHEDILRFNIEQHVPDT 215
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+R + +IGNLPF +ST L+I W + ++
Sbjct: 216 AQR--------LHLIGNLPFAISTRLLINWYEDLA 242
>gi|346471303|gb|AEO35496.1| hypothetical protein [Amblyomma maculatum]
Length = 330
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 106/150 (70%), Gaps = 1/150 (0%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPPMPS+RD++++Y +RA+++LSQNFL +P+L ++VR G++ V EVGPGPG +T
Sbjct: 15 RLPPMPSVRDLLRMYGIRAMRKLSQNFLLDPKLARRLVRACGSMRDKHVIEVGPGPGCLT 74
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW- 125
R +L ++V IEKD RF P L +L++A+ +H LGD+ ++ E+ W
Sbjct: 75 RPLLELGARQVVAIEKDDRFEPTLRILSEATGNRLHVVLGDIFYQHLEEFIPEELAVPWE 134
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
S+ LP ++++GNLPF+V++PL+I+W++ +S
Sbjct: 135 SDELPEVQVVGNLPFSVASPLLIRWLRQMS 164
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 137 NLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICL 196
N FN L+IK ++ LFP ++ +L L++ + + P R QL+V+E G+IC
Sbjct: 255 NCLFNGRQKLLIKGVRN-----LFPHNREELAAKLVDVSDIDPTTRIIQLTVEEVGRICH 309
Query: 197 AYRDMCEEMPGLYEYTL 213
Y + C E P L +Y
Sbjct: 310 VYEEFCAEEPELRQYNF 326
>gi|198466094|ref|XP_001353894.2| GA20255 [Drosophila pseudoobscura pseudoobscura]
gi|224471856|sp|Q2LZ79.2|TFB1M_DROPS RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
AltName: Full=Mitochondrial transcription factor B1;
AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
Precursor
gi|198150443|gb|EAL29629.2| GA20255 [Drosophila pseudoobscura pseudoobscura]
Length = 337
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 104/150 (69%), Gaps = 12/150 (8%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPG 63
+RLPP+P+IR+++KLYKL+A+KQLSQNFL + RLTDKIV++AG I + V EVGPGPG
Sbjct: 12 GMRLPPLPTIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPG 71
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPC--PVHFHLGDVMSFTMQNMFSED 120
ITRSIL R+P RL+L+EKD RF L +L + ASP V + D++ F ++ +
Sbjct: 72 GITRSILRRQPQRLILVEKDRRFGETLQLLRECASPLDMQVDIYYDDILRFNIEQHIPDT 131
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKW 150
+R I +IGNLPF++ST L+I W
Sbjct: 132 TQR--------IHLIGNLPFSISTRLLINW 153
>gi|194748282|ref|XP_001956577.1| GF25284 [Drosophila ananassae]
gi|190623859|gb|EDV39383.1| GF25284 [Drosophila ananassae]
Length = 330
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 107/155 (69%), Gaps = 12/155 (7%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPG 63
+RLPP+P+IR+++KLYKL+A+KQLSQNFL + RLTDKIV++AG I ++ V EVGPGPG
Sbjct: 12 GMRLPPLPTIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDHSDIVLEVGPGPG 71
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPCPVHF--HLGDVMSFTMQNMFSED 120
ITRSIL R+P RL+L+EKD RF L +L + A P + + D++ F +++ +
Sbjct: 72 GITRSILRRQPQRLILVEKDERFGETLQLLRECAKPLNIQLDTYYDDILRFNIEHHVPDT 131
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+R + +IGNLPF +ST L+I W + ++
Sbjct: 132 TQR--------LHLIGNLPFAISTRLLINWYEDLA 158
>gi|221106688|ref|XP_002161204.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Hydra magnipapillata]
Length = 328
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 99/155 (63%), Gaps = 2/155 (1%)
Query: 2 AAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPG 61
A K LRLPPMP I D+++LY LRA KQLSQNF+ + +TDKI R A N V EVG G
Sbjct: 4 ATKQLRLPPMPRISDLMRLYGLRAKKQLSQNFILDLNVTDKIARKADVFDCN-VIEVGSG 62
Query: 62 PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR 121
PGS++RS+LN L +E D RF P L++L AS + + D++ F M
Sbjct: 63 PGSLSRSLLNAGLRHLYAVEIDKRFLPSLELLQDASDGHMSIYHADILKFDMVKPLKNVI 122
Query: 122 RRDW-SEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+W S+ LP IR++GNLPF+VS PL ++W++A+S
Sbjct: 123 SAEWESDDLPNIRLVGNLPFSVSIPLFLQWLEALS 157
>gi|195174159|ref|XP_002027848.1| GL16283 [Drosophila persimilis]
gi|194115524|gb|EDW37567.1| GL16283 [Drosophila persimilis]
Length = 337
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 104/150 (69%), Gaps = 12/150 (8%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPG 63
+RLPP+P+IR+++KLYKL+A+KQLSQNFL + RLTDKIV++AG I + V EVGPGPG
Sbjct: 12 GMRLPPLPTIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPG 71
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPC--PVHFHLGDVMSFTMQNMFSED 120
ITRSIL R+P RL+L+EKD RF L +L + ASP V + D++ F ++ +
Sbjct: 72 GITRSILRRQPQRLILVEKDRRFGETLQLLRECASPLDMQVDIYYDDILRFNIEQHIPDM 131
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKW 150
+R I +IGNLPF++ST L+I W
Sbjct: 132 TQR--------IHLIGNLPFSISTRLLINW 153
>gi|156358457|ref|XP_001624535.1| predicted protein [Nematostella vectensis]
gi|156211322|gb|EDO32435.1| predicted protein [Nematostella vectensis]
Length = 325
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 96/153 (62%), Gaps = 2/153 (1%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
ALRLPPMP + D+++LY L A KQ SQNF+ + +TDKI + + VCEVG GPGS
Sbjct: 2 ALRLPPMPKVSDLLRLYGLTAQKQFSQNFILDLNITDKIAK-VSDVFDCYVCEVGAGPGS 60
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
+TRSILN + +E D RF P L +L A+ + H D+M F + + F
Sbjct: 61 LTRSILNAGARHVAAVEIDRRFLPSLQLLEDAAKGRMTLHHADIMKFNIPSAFPRASPTG 120
Query: 125 WSEG-LPGIRIIGNLPFNVSTPLIIKWIQAISE 156
W G +PG+R++GNLPF VS PL+++W++AI E
Sbjct: 121 WESGDIPGVRMVGNLPFGVSIPLLLQWLEAIPE 153
>gi|83583584|gb|ABC24676.1| mitochondrial transcription factor B1 [Tigriopus californicus]
Length = 365
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 123/206 (59%), Gaps = 9/206 (4%)
Query: 2 AAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPG 61
++ A RLPP+PS RD+++LY +R+ + LSQNF+ +PR DKI R AG + G V E+GPG
Sbjct: 3 SSAARRLPPLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPG 62
Query: 62 PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR 121
PG ITR+++ ++V+IEKD RF L +L +A+ + ++GDV+ + +
Sbjct: 63 PGGITRALIGNGARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAEL 122
Query: 122 RRDW-SEGLPGIRIIGNLPFNVSTPLIIKWIQAI-SENLLFPKHKRQLVVSLLERACVKP 179
R+ W S +P IR++ NLPFN++ P +++ I+ + + + LF + V++ + +
Sbjct: 123 RQPWDSPQVPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERI 182
Query: 180 ILRP-----YQLSV--QEFGQICLAY 198
I +P +LSV Q F Q L Y
Sbjct: 183 IAQPGDRNRSRLSVLCQNFAQARLKY 208
>gi|83025307|gb|ABB95746.1| mitochondrial transcription factor B1, partial [Tigriopus
californicus]
Length = 355
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 116/198 (58%), Gaps = 9/198 (4%)
Query: 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSI 69
P+PS RD+++LY +R+ + LSQNF+ +PR DKI R AG + G V E+GPGPG ITR++
Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60
Query: 70 LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEG 128
+ ++V+IEKD RF L +L +A+P + ++GDV+ + + R+ W S
Sbjct: 61 IGNGARQVVVIEKDARFLGPLRLLQEAAPGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRP----- 183
+P IR++ NLPFN++ P +++ I+ ++ + + R V ++ + I+ P
Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAPPGDRN 180
Query: 184 -YQLSV--QEFGQICLAY 198
+LSV Q F Q L Y
Sbjct: 181 RSRLSVLCQNFAQARLKY 198
>gi|324517882|gb|ADY46945.1| Dimethyladenosine transferase 1 [Ascaris suum]
Length = 362
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 97/154 (62%), Gaps = 2/154 (1%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
MA RLPP+P++RD I +YKL A + LSQNFL + LT KIVR AG G+ V E+GP
Sbjct: 1 MAKSFSRLPPLPALRDFIHMYKLNAKRILSQNFLMDMNLTRKIVRAAGIEEGDRVVEIGP 60
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120
GPG ITR+IL RL +IE D RF P L LA+AS +H H D + + ++ +
Sbjct: 61 GPGGITRAILEAGCERLDVIEIDKRFIPPLQHLAEASGSRLHIHHADALKTDIGAIWQAN 120
Query: 121 RRR--DWSEGLPGIRIIGNLPFNVSTPLIIKWIQ 152
W + P + ++GNLPF++++PLIIK+++
Sbjct: 121 ATEGTSWDDAPPRLHVVGNLPFHIASPLIIKYLR 154
>gi|326436805|gb|EGD82375.1| dimethyladenosine transferase 1 [Salpingoeca sp. ATCC 50818]
Length = 321
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 113/195 (57%), Gaps = 17/195 (8%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
++LPP+PS+ +++LY +RALK LSQNFL +P +TDK VR+AG + V EVG GPGS+
Sbjct: 1 MKLPPVPSVAQLLRLYGVRALKDLSQNFLLDPSITDKFVRHAGKLKDKVVIEVGGGPGSL 60
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE------ 119
TRSIL +P +L +IEKD R P LD++A+AS GD + + + ++
Sbjct: 61 TRSILKAQPRKLYVIEKDTRMLPMLDLVAEASGGVAEIIPGDALHIDYEQLITQANVATQ 120
Query: 120 ---DRRRDWSEGLPG---IRIIGNLPFNVSTPLIIKWIQAIS-ENLLFPKHKRQLVV--- 169
D S P + IIGNLPF ++TPLI+ +++ +S + F + + L +
Sbjct: 121 PTAAEGADSSAAAPAETDLHIIGNLPFGIATPLILSYLRQLSRRDSAFARSRPTLTLCFQ 180
Query: 170 -SLLERACVKPILRP 183
+ ER C P +P
Sbjct: 181 REVGERICAPPRTKP 195
>gi|25141369|ref|NP_491242.2| Protein T03F1.7 [Caenorhabditis elegans]
gi|74961647|sp|P91424.2|TFB1M_CAEEL RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
AltName: Full=Mitochondrial transcription factor B1;
AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
Precursor
gi|351060163|emb|CCD67792.1| Protein T03F1.7 [Caenorhabditis elegans]
Length = 367
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 103/158 (65%), Gaps = 5/158 (3%)
Query: 3 AKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGP 62
A A RLPP+P++RD I +Y+LRA K LSQN+L + +T KI ++A I + V E+GPGP
Sbjct: 2 ASASRLPPLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVIEKDWVIEIGPGP 61
Query: 63 GSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRR 122
G ITR+IL +RL ++E D RF P L LA+A+ + H D + + +++ +
Sbjct: 62 GGITRAILEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHQDALRTEIGDIWKNETA 121
Query: 123 R----DWSEG-LPGIRIIGNLPFNVSTPLIIKWIQAIS 155
R DW + LP + +IGNLPFN+++PLIIK+++ +S
Sbjct: 122 RPESVDWHDSNLPAMHVIGNLPFNIASPLIIKYLRDMS 159
>gi|83025301|gb|ABB95743.1| mitochondrial transcription factor B1, partial [Tigriopus
californicus]
gi|83025303|gb|ABB95744.1| mitochondrial transcription factor B1, partial [Tigriopus
californicus]
Length = 355
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 117/198 (59%), Gaps = 9/198 (4%)
Query: 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSI 69
P+PS RD+++LY +R+ + LSQNF+ +PR DKI R AG + G V E+GPGPG ITR++
Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60
Query: 70 LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEG 128
+ ++V+IEKD RF L +L +A+ + ++GDV+ + + R+ W S
Sbjct: 61 IGNGARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQAI-SENLLFPKHKRQLVVSLLERACVKPILRP---- 183
+P IR++ NLPFN++ P +++ I+ + + + LF + V++ + + I +P
Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 180
Query: 184 -YQLSV--QEFGQICLAY 198
+LSV Q F Q L Y
Sbjct: 181 RSRLSVLCQNFAQARLKY 198
>gi|83025299|gb|ABB95742.1| mitochondrial transcription factor B1, partial [Tigriopus
californicus]
Length = 355
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 117/198 (59%), Gaps = 9/198 (4%)
Query: 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSI 69
P+PS RD+++LY +R+ + LSQNF+ +PR DKI R AG + G V E+GPGPG ITR++
Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60
Query: 70 LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEG 128
+ ++++IEKD RF L +L +A+ + ++GDV+ + + R+ W S
Sbjct: 61 IGNGARQVLVIEKDARFLNPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQAI-SENLLFPKHKRQLVVSLLERACVKPILRP---- 183
+P IR++ NLPFN++ P +++ I+ + + + LF + V++ + + I RP
Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIARPGDRN 180
Query: 184 -YQLSV--QEFGQICLAY 198
+LSV Q F Q L Y
Sbjct: 181 RSRLSVLCQNFAQARLKY 198
>gi|83025309|gb|ABB95747.1| mitochondrial transcription factor B1, partial [Tigriopus
californicus]
Length = 355
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 117/198 (59%), Gaps = 9/198 (4%)
Query: 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSI 69
P+PS RD+++LY +R+ + LSQNF+ +PR DKI R AG + G V E+GPGPG ITR++
Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60
Query: 70 LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEG 128
+ ++V+IEKD RF L +L +A+ + ++GDV+ + + R+ W S
Sbjct: 61 IGNGARQVVVIEKDDRFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQAI-SENLLFPKHKRQLVVSLLERACVKPILRP---- 183
+P IR++ NLPFN++ P +++ I+ + + + LF + V++ + + I +P
Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 180
Query: 184 -YQLSV--QEFGQICLAY 198
+LSV Q F Q L Y
Sbjct: 181 RSRLSVLCQNFAQARLKY 198
>gi|83025297|gb|ABB95741.1| mitochondrial transcription factor B1, partial [Tigriopus
californicus]
Length = 355
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 117/198 (59%), Gaps = 9/198 (4%)
Query: 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSI 69
P+PS RD+++LY +R+ + LSQNF+ +PR DKI R AG + G V E+GPGPG ITR++
Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60
Query: 70 LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEG 128
+ ++++IEKD RF L +L +A+ + ++GDV+ + + R+ W S
Sbjct: 61 IGNGARQVLVIEKDARFLNPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQAISE-NLLFPKHKRQLVVSLLERACVKPILRP---- 183
+P IR++ NLPFN++ P +++ I+ ++ + LF + V++ + + I RP
Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAXDNLFSYGRVPAVLTFQKEVAERIIARPGDRN 180
Query: 184 -YQLSV--QEFGQICLAY 198
+LSV Q F Q L Y
Sbjct: 181 RSRLSVLCQNFAQARLKY 198
>gi|83025311|gb|ABB95748.1| mitochondrial transcription factor B1, partial [Tigriopus
californicus]
Length = 355
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 112/191 (58%), Gaps = 2/191 (1%)
Query: 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSI 69
P+PS RD+++LY +R+ + LSQNF+ +PR DKI R AG + G V E+GPGPG ITR++
Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60
Query: 70 LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEG 128
+ ++V+IEKD RF L +L +A+ + ++GDV+ + + R+ W S
Sbjct: 61 IGNGARQVVVIEKDDRFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQAI-SENLLFPKHKRQLVVSLLERACVKPILRPYQLS 187
+P IR++ NLPFN++ P +++ I+ + + + LF + V++ + + I +P +
Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 180
Query: 188 VQEFGQICLAY 198
+C Y
Sbjct: 181 RSRLSVLCQNY 191
>gi|341896697|gb|EGT52632.1| hypothetical protein CAEBREN_15754 [Caenorhabditis brenneri]
Length = 364
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 101/156 (64%), Gaps = 5/156 (3%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
ALRLPP+P++RD I +Y+LRA K LSQN+L + +T KI + A + V E+GPGPG
Sbjct: 2 ALRLPPLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKQAKVKENDWVVEIGPGPGG 61
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRR- 123
ITR+IL +RL ++E D RF P L LA+A+ + H D + + +++ + R
Sbjct: 62 ITRAILEAGASRLDVVEIDNRFIPPLQHLAEAAGSRMFIHHEDALRTEIGDIWKNEPNRP 121
Query: 124 ---DW-SEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
DW S LP + +IGNLPFN+++PLIIK+++ +S
Sbjct: 122 SSVDWHSPNLPAMHVIGNLPFNIASPLIIKYLRDMS 157
>gi|341900967|gb|EGT56902.1| hypothetical protein CAEBREN_01301 [Caenorhabditis brenneri]
Length = 340
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 101/156 (64%), Gaps = 5/156 (3%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
ALRLPP+P++RD I +Y+LRA K LSQN+L + +T KI + A + V E+GPGPG
Sbjct: 2 ALRLPPLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKQAKVKENDWVVEIGPGPGG 61
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRR- 123
ITR+IL +RL ++E D RF P L LA+A+ + H D + + +++ + R
Sbjct: 62 ITRAILEAGASRLDVVEIDNRFIPPLQHLAEAAGSRMFIHHEDALRTEIGDIWKNEPNRP 121
Query: 124 ---DW-SEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
DW S LP + +IGNLPFN+++PLIIK+++ +S
Sbjct: 122 SSVDWHSPNLPAMHVIGNLPFNIASPLIIKYLRDMS 157
>gi|83025305|gb|ABB95745.1| mitochondrial transcription factor B1, partial [Tigriopus
californicus]
Length = 355
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 116/198 (58%), Gaps = 9/198 (4%)
Query: 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSI 69
P+PS RD+++LY +R+ + LSQNF+ +PR DKI R AG + G V E+GPGPG ITR++
Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFILDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60
Query: 70 LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEG 128
+ ++V+IEKD RF L +L +A+ + ++GDV+ + + R+ W S
Sbjct: 61 IGNGARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQAI-SENLLFPKHKRQLVVSLLERACVKPILRP---- 183
+P IR++ NLPFN++ P ++ I+ + + + LF + V++ + + I +P
Sbjct: 121 VPDIRLVSNLPFNITMPFXVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 180
Query: 184 -YQLSV--QEFGQICLAY 198
+LSV Q F Q L Y
Sbjct: 181 RSRLSVLCQNFAQARLKY 198
>gi|393905480|gb|EJD73986.1| hypothetical protein LOAG_18635 [Loa loa]
Length = 655
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 102/157 (64%), Gaps = 3/157 (1%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
MA RLPP+PS+++ + Y+L+A K LSQN+L + LT KIVR A G+ V E+GP
Sbjct: 1 MATNFSRLPPLPSLKNFLYAYRLQAKKILSQNYLMDMNLTRKIVRQAVVKEGDYVIEIGP 60
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120
GPGSITR+IL RL +IE D RF P L++L +AS + H D++ ++ ++S+
Sbjct: 61 GPGSITRAILETNCRRLDVIEIDHRFIPPLEVLKEASEERMFIHRADILKTNIEQIWSQA 120
Query: 121 --RRRDWSEG-LPGIRIIGNLPFNVSTPLIIKWIQAI 154
R W E LP IIGNLPFN+++PLIIK+++ +
Sbjct: 121 GLERVAWEEDRLPMAHIIGNLPFNIASPLIIKFLREM 157
>gi|83025313|gb|ABB95749.1| mitochondrial transcription factor B1, partial [Tigriopus
californicus]
Length = 355
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 111/191 (58%), Gaps = 2/191 (1%)
Query: 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSI 69
P+PS RD+++LY +R+ + LSQNF +PR DKI R AG + G V E+GPGPG ITR++
Sbjct: 1 PLPSTRDLLRLYGIRSKRSLSQNFXLDPRTLDKIARTAGPLAGQTVVEIGPGPGGITRAL 60
Query: 70 LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEG 128
+ ++V+IEKD RF L +L +A+ + ++GDV+ + + R+ W S
Sbjct: 61 IGNGARQVVVIEKDARFLSPLRLLQEAAQGRIIINMGDVLKVNLSKFLDAELRQPWDSPQ 120
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQAI-SENLLFPKHKRQLVVSLLERACVKPILRPYQLS 187
+P IR++ NLPFN++ P +++ I+ + + + LF + V++ + + I +P +
Sbjct: 121 VPDIRLVSNLPFNITMPFLVRTIRDMAAHDNLFSYGRVPAVLTFQKEVAERIIAQPGDRN 180
Query: 188 VQEFGQICLAY 198
+C Y
Sbjct: 181 RSRLSVLCQNY 191
>gi|281200359|gb|EFA74579.1| Dimethyladenosine transferase [Polysphondylium pallidum PN500]
Length = 410
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 117/210 (55%), Gaps = 10/210 (4%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
+++LP MP I+D+I+LY L A +QLSQNFL + +TDKI R AG V EVG GPG
Sbjct: 2 SIKLPNMPKIQDLIRLYGLSAKQQLSQNFLLDLNITDKICRVAGGFNDCTVIEVGAGPGG 61
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRR-- 122
+TRS+LN +++ +E D RF P L ML AS + +GD+ + +
Sbjct: 62 LTRSLLNSGAKKVIAVEMDRRFIPALKMLEDASDGRLSVVMGDMKDVNEAEILKQFGAVP 121
Query: 123 RDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILR 182
DW + ++IIGNLPFNV T L++KWI+ I + R ++ + ++ I+
Sbjct: 122 TDWDKP-SKVKIIGNLPFNVGTHLMLKWIRQIKPREGLFEFGRVPMILMFQKELADRIIA 180
Query: 183 PYQLSVQEFGQICLAYRDMCE-----EMPG 207
P +S E+G++ + + C+ ++PG
Sbjct: 181 P--VSSHEYGRLAVMIQQECDSKVVYDLPG 208
>gi|340383143|ref|XP_003390077.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like
[Amphimedon queenslandica]
Length = 218
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 8/153 (5%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P++ DII+LY L A ++LSQNFL + LT+KIVR A + VCEVG GPG+IT
Sbjct: 6 RLPPLPTVSDIIRLYGLSAQQKLSQNFLLDLNLTNKIVRYADIAQSSCVCEVGSGPGAIT 65
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF----TMQNMFSEDRR 122
RSILN A+++ IEKD RF P L++L+ A+ + GD++ F + N+ +
Sbjct: 66 RSILNATNAKVLAIEKDRRFLPSLELLSDATNGRLQVCHGDILDFDWPGSCDNIVTP--- 122
Query: 123 RDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ W + + IIGNLPF+VS PL++KW++ ++
Sbjct: 123 KPW-DSTGDLSIIGNLPFSVSIPLLLKWLRYLT 154
>gi|170575593|ref|XP_001893303.1| ribosomal RNA adenine dimethylase family protein [Brugia malayi]
gi|158600773|gb|EDP37864.1| ribosomal RNA adenine dimethylase family protein [Brugia malayi]
Length = 364
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 101/157 (64%), Gaps = 3/157 (1%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
MA RLPP+PS++ + Y+L+A K LSQN+L + LT KIVR A G+ V E+GP
Sbjct: 1 MATNFSRLPPLPSLKSFLYAYQLQAKKILSQNYLMDMNLTRKIVRQAEMKKGDYVVEIGP 60
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120
GPGSITR+IL RL +IE D RF P L++L +AS + H D++ ++ ++S+
Sbjct: 61 GPGSITRAILEMDCRRLDVIEIDHRFVPPLEVLKEASEERMFIHRADILKTNIEQIWSQA 120
Query: 121 --RRRDWSEG-LPGIRIIGNLPFNVSTPLIIKWIQAI 154
R W E LP IIGNLPFN+++PLIIK+++ +
Sbjct: 121 GLERVAWEEDRLPTAHIIGNLPFNIASPLIIKFLREM 157
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 140 FNVSTPLIIKWIQAISENLLFPKH-KRQLVVSLLERACVKPILRPYQLSVQEFGQICLAY 198
FN +IK ++ L+PK + L LL+R + P L V++F IC Y
Sbjct: 252 FNYRQKYVIKGVRT-----LYPKELAKHLADDLLKRCRIDPTTTAICLGVEQFADICYVY 306
Query: 199 RDMCEEMPGLYEY 211
+ C + PG++ Y
Sbjct: 307 EEHCRKYPGVFLY 319
>gi|395535194|ref|XP_003775370.1| PREDICTED: LOW QUALITY PROTEIN: dimethyladenosine transferase 1,
mitochondrial-like [Sarcophilus harrisii]
Length = 392
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 80/116 (68%)
Query: 41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP 100
DKI+R AG + V EVGPGPG ITRSILN A L+++EKD RF P L ML+ A+P
Sbjct: 56 DKIIRKAGNLKNAHVYEVGPGPGGITRSILNAEVADLLVVEKDTRFVPGLQMLSDAAPGK 115
Query: 101 VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+ GDV++F ++ F E ++ W + P + IIGNLPF+VSTPLIIKW++ ISE
Sbjct: 116 LRIVHGDVLTFKVEKAFPEHLKKKWEDDPPSVYIIGNLPFSVSTPLIIKWLENISE 171
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + +L A V P LRP QLS+ F +C YR MC+E L+ Y D
Sbjct: 276 GILFPQAERSENTQKMLMLADVDPTLRPAQLSMLHFKNLCDVYRKMCDEDSNLFSYNFRD 335
Query: 216 TPG 218
G
Sbjct: 336 ELG 338
>gi|402586200|gb|EJW80138.1| ribosomal RNA adenine dimethylase [Wuchereria bancrofti]
Length = 364
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 101/157 (64%), Gaps = 3/157 (1%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
MA RLPP+PS++ + Y+L+A K LSQN+L + LT KIVR A G+ V E+GP
Sbjct: 1 MATNFSRLPPLPSLKSFLYAYQLQAKKILSQNYLMDMNLTRKIVRQAEVKQGDCVVEIGP 60
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120
GPGSITR+IL RL +IE D RF P L++L +AS + H D++ ++ ++S+
Sbjct: 61 GPGSITRAILETNCRRLDVIEVDHRFVPPLEVLKEASEERMFIHRSDILKTNIEQIWSQA 120
Query: 121 --RRRDWSEG-LPGIRIIGNLPFNVSTPLIIKWIQAI 154
R W E LP IIGNLPFN+++PLIIK+++ +
Sbjct: 121 GLERVAWEEDRLPTAHIIGNLPFNIASPLIIKFLREM 157
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 140 FNVSTPLIIKWIQAISENLLFPKH-KRQLVVSLLERACVKPILRPYQLSVQEFGQICLAY 198
FN +IK +++ L+PK + L LL+R + P L V++F IC Y
Sbjct: 252 FNYRQKYVIKGVRS-----LYPKELAKNLADDLLKRCRIDPTTTAICLGVEQFADICYVY 306
Query: 199 RDMCEEMPGLYEY 211
+ C + PG++ Y
Sbjct: 307 EEHCRKYPGVFLY 319
>gi|312085629|ref|XP_003144755.1| ribosomal RNA adenine dimethylase [Loa loa]
Length = 342
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 101/155 (65%), Gaps = 3/155 (1%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
MA RLPP+PS+++ + Y+L+A K LSQN+L + LT KIVR A G+ V E+GP
Sbjct: 1 MATNFSRLPPLPSLKNFLYAYRLQAKKILSQNYLMDMNLTRKIVRQAVVKEGDYVIEIGP 60
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120
GPGSITR+IL RL +IE D RF P L++L +AS + H D++ ++ ++S+
Sbjct: 61 GPGSITRAILETNCRRLDVIEIDHRFIPPLEVLKEASEERMFIHRADILKTNIEQIWSQA 120
Query: 121 --RRRDWSEG-LPGIRIIGNLPFNVSTPLIIKWIQ 152
R W E LP IIGNLPFN+++PLIIK+++
Sbjct: 121 GLERVAWEEDRLPMAHIIGNLPFNIASPLIIKFLR 155
>gi|308505052|ref|XP_003114709.1| hypothetical protein CRE_28029 [Caenorhabditis remanei]
gi|308258891|gb|EFP02844.1| hypothetical protein CRE_28029 [Caenorhabditis remanei]
Length = 363
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 102/154 (66%), Gaps = 5/154 (3%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P++RD I +Y+LRA K LSQN+L + +T KI ++A + V E+GPGPG IT
Sbjct: 4 RLPPLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVHENDWVIEIGPGPGGIT 63
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRR--- 123
R+IL +RL ++E D RF P L LA+A+ + H D + + +++ + +R
Sbjct: 64 RAILEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHQDALRTEIGDIWKAETQRPKS 123
Query: 124 -DWSE-GLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
DW++ LP + +IGNLPFN+++PLIIK+++ +S
Sbjct: 124 VDWNDSSLPPMHVIGNLPFNIASPLIIKYLRDMS 157
>gi|270014921|gb|EFA11369.1| hypothetical protein TcasGA2_TC011527 [Tribolium castaneum]
Length = 379
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 105/175 (60%), Gaps = 14/175 (8%)
Query: 21 YKLRALKQLSQNFL--FE--------PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
Y + A++Q +NFL FE ++TDKIV+ AG I + VCEVGPGPGSITRSI+
Sbjct: 61 YSIWAVRQ--ENFLDDFEIPTTVTESAKITDKIVKAAGNIRNHYVCEVGPGPGSITRSII 118
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVH--FHLGDVMSFTMQNMFSEDRRRDWSEG 128
+ P +L+++EKDPRF P L++L +AS V + D+ F + F+ R+W++
Sbjct: 119 RKCPKKLIVVEKDPRFVPILELLQEASQSHVKMGIKIQDIRDFNFEEGFAGAPAREWTDY 178
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRP 183
P I +IGNLPF+VST LII+W+ AISE R + ++ + I+ P
Sbjct: 179 PPPIHLIGNLPFSVSTNLIIRWLHAISEQRSAWSFGRSTMTLTFQKEVAERIVAP 233
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 159 LFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEY 211
LFP+ KR +L V L A V +RP+++S +EF +IC AY+ +CEE P + Y
Sbjct: 313 LFPEDKRDELAVKLFALADVDSRIRPFEISNEEFARICYAYKVICEEDPEIESY 366
>gi|328873034|gb|EGG21401.1| Dimethyladenosine transferase [Dictyostelium fasciculatum]
Length = 470
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 116/217 (53%), Gaps = 11/217 (5%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
++LP MP I+D+I++Y L A +QLSQNFL + +TDKI R AG V EVG GPG +
Sbjct: 1 MKLPIMPKIQDLIRMYGLSAKQQLSQNFLLDLNITDKICREAGGFKDCTVIEVGAGPGGL 60
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS--EDRRR 123
TRS+L +++ +E D RF P L ML +AS + +GD+M + + +
Sbjct: 61 TRSLLTAGAKKVIAVEMDRRFIPALRMLEEASEGRLSVVMGDMMKVDEGELLRHFQAEKM 120
Query: 124 DWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRP 183
W E ++I+GNLPFNV T L++KW++ I + R +V + ++ + I+ P
Sbjct: 121 PWEEK-SKVKIVGNLPFNVGTHLMLKWVRQIKPREGLYAYGRVPMVLMFQKELAERIIAP 179
Query: 184 YQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTPGDI 220
+ +G++ + C + + D PG +
Sbjct: 180 --VDSHNYGRLAVMVGQEC------HSKIIYDLPGKV 208
>gi|66808105|ref|XP_637775.1| hypothetical protein DDB_G0286199 [Dictyostelium discoideum AX4]
gi|60466213|gb|EAL64275.1| hypothetical protein DDB_G0286199 [Dictyostelium discoideum AX4]
Length = 485
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 113/218 (51%), Gaps = 45/218 (20%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITR 67
LPPMP I++II+++ L A +QLSQNFL + +TDKI + +G V EVG GPG +TR
Sbjct: 10 LPPMPKIQEIIRIFGLSAKQQLSQNFLIDKNITDKICKKSGGFDDCTVIEVGAGPGGLTR 69
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRR---- 123
S+L +++ +E DPRF P L ML ++S G MS M NM D +
Sbjct: 70 SLLTSGAKKVIAVEMDPRFYPALKMLEESS--------GGRMSLIMANMMDVDEAKLLRD 121
Query: 124 ------DWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISEN------------LLFPKHKR 165
+W + ++IIGNLPFNV T L++KWI+ I+ L+F K
Sbjct: 122 AGAETTNWKDK-SKVKIIGNLPFNVGTHLMLKWIRQIAPRQGLYEFGRVPMYLMFQKE-- 178
Query: 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCE 203
L +R C Q+ +E+ ++ + + MC+
Sbjct: 179 -----LSDRICA-------QVGSEEYSRLSVMVQQMCQ 204
>gi|358332771|dbj|GAA51388.1| mitochondrial dimethyladenosine transferase 1 [Clonorchis sinensis]
Length = 444
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 106/186 (56%), Gaps = 29/186 (15%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
+ AK L PP+PS+R+++++Y LRA KQLSQNFL +P + V+ AG++ V EVGP
Sbjct: 63 VVAKPLHFPPLPSLREVLRIYGLRAQKQLSQNFLLQPASLNSFVKCAGSLHNAYVLEVGP 122
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVMSFTMQNMF 117
GPG +TR+IL RP L ++E D RF P L+ L A+ + + D++ FT + +F
Sbjct: 123 GPGGLTRAILQCRPRHLAVVEIDRRFIPGLEELRMAAAEMGIKMDIYRQDILQFTGEAIF 182
Query: 118 -------------------SEDRRRDWSEGL-------PGIRIIGNLPFNVSTPLIIKWI 151
S+ + D + G +R+IGNLPFN+STPL+I+W+
Sbjct: 183 PIEACQTEESWGATVANSSSDFSKHDATCGALTCPPPPSRVRVIGNLPFNISTPLVIRWL 242
Query: 152 QAISEN 157
ISE+
Sbjct: 243 HDISEH 248
>gi|225714488|gb|ACO13090.1| Mitochondrial dimethyladenosine transferase 1, mitochondrial
precursor [Lepeophtheirus salmonis]
Length = 330
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 86/130 (66%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K+LSQNF+ +P+ ++ + G++ V EVGPGPG ITR+IL + ++ +IEKD RF
Sbjct: 7 KKLSQNFILDPKTLSRLSKVTGSLYNKTVVEVGPGPGGITRAILEQGAQKVFVIEKDSRF 66
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P LD+L +AS + +GD + F Q + + D + +W + +P IR+IGNLPFNV+TP
Sbjct: 67 LPSLDLLREASGNRLSIKIGDCLHFNTQKLLNSDLKSNWPDQVPNIRLIGNLPFNVATPY 126
Query: 147 IIKWIQAISE 156
++K + +S+
Sbjct: 127 VVKLFECMSD 136
>gi|330814914|ref|XP_003291474.1| hypothetical protein DICPUDRAFT_156077 [Dictyostelium purpureum]
gi|325078362|gb|EGC32018.1| hypothetical protein DICPUDRAFT_156077 [Dictyostelium purpureum]
Length = 489
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 92/151 (60%), Gaps = 3/151 (1%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
+LPPMP++++II+ + L A +QLSQNFL + +TDKI + +G V EVG GPG +T
Sbjct: 4 KLPPMPTLQEIIRTFGLSAKQQLSQNFLIDKNITDKICKTSGGFKDCTVIEVGAGPGGLT 63
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRR--D 124
RS+L +++ +E DPRF P L ML AS + + +++ + E+
Sbjct: 64 RSLLTSEAKKVIAVEMDPRFYPALKMLEDASEGRMKLIMANMLEVDEAKILFENGAEFAP 123
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W E ++IIGNLPFNV T L++KWI+ IS
Sbjct: 124 WEEK-SKVKIIGNLPFNVGTHLMLKWIRQIS 153
>gi|290974683|ref|XP_002670074.1| predicted protein [Naegleria gruberi]
gi|284083629|gb|EFC37330.1| predicted protein [Naegleria gruberi]
Length = 318
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 109/191 (57%), Gaps = 9/191 (4%)
Query: 20 LYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVL 79
+Y L+A KQLSQNFL +TDKIVR G I+ V E+GPGPG +TRSIL P RL++
Sbjct: 1 MYGLQASKQLSQNFLLNLHVTDKIVRVCGDISNKTVIEIGPGPGCLTRSILQANPKRLIV 60
Query: 80 IEKDPRFTPCLDMLAQA-SPCPVHFHLGDVMS---FTMQNMFSEDRRR--DWSEGLPGIR 133
+EKD RF P L L Q+ +H GD++ F + + F E + S+ L +
Sbjct: 61 VEKDERFMPALQNLQQSVDDGKMHIVQGDILKVDQFKLVDHFLEKDEKVLKNSDELANVV 120
Query: 134 IIGNLPFNVSTPLIIKWIQAISENL-LFPKHKRQLVVSLLERACVKPILRPYQLSVQEFG 192
IGNLPF ++TPL+I W++ + F K+ +V + ++ + + S +EFG
Sbjct: 121 FIGNLPFGIATPLLINWLKDCANGTGAFAFGKKIPMVLMFQKEV--GLRMSAKNSTKEFG 178
Query: 193 QICLAYRDMCE 203
++ ++ + +C+
Sbjct: 179 RLSVSSQSVCD 189
>gi|268560678|ref|XP_002646265.1| Hypothetical protein CBG11970 [Caenorhabditis briggsae]
Length = 358
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 5/154 (3%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P++RD I +Y+LRA K LSQN+L + + KI ++A + V E+G GPG IT
Sbjct: 2 RLPPLPALRDFIHMYRLRAKKILSQNYLMDMNINRKIAKHAKVNENDWVIEIGSGPGGIT 61
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRR--- 123
R IL +RL ++E D RF P L LA+A+ + H D + + +++ ++ R
Sbjct: 62 RGILEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHKDALRTEIGDIWKKEPNRPSS 121
Query: 124 -DWSEG-LPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + LP + +IGNLPFN+++PLIIK+++ +S
Sbjct: 122 VPWHDSKLPQMHVIGNLPFNIASPLIIKYLRDMS 155
>gi|122095936|sp|Q1A705.1|TFB1M_HARVE RecName: Full=Dimethyladenosine transferase 1, mitochondrial;
AltName: Full=Mitochondrial 12S rRNA dimethylase 1;
AltName: Full=Mitochondrial transcription factor B1;
AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase 1; Flags:
Precursor
gi|83032436|gb|ABB97064.1| mitochondrial transcription factor B-like protein [Vermamoeba
vermiformis]
Length = 343
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 100/186 (53%), Gaps = 37/186 (19%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
+RLPP+P+I ++I+L+ L A +QLSQNFL + +TDKIVR++G +T V EVGPGPG
Sbjct: 2 TMRLPPLPTIGELIRLFGLSAKQQLSQNFLLDLNITDKIVRSSGDLTNKTVIEVGPGPGG 61
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQA------SPCPVHFH-------------- 104
+TRSIL +LV+IEKD RF P L++L A SP F
Sbjct: 62 LTRSILKAGAKKLVVIEKDRRFLPALEVLRHAAGNIDGSPWEEAFLTKSEMDAKRYMSYA 121
Query: 105 ---------LGDVMSFTMQNMFSE-------DRRRDWSEGLPGIRIIGNLPFNVSTPLII 148
+ DV+ Q + + + W E + I IIGNLPF +ST L I
Sbjct: 122 PNKSRMQIVMNDVLRVDEQEILQHIHAPIDSNDKTQW-ENMAPITIIGNLPFAISTELTI 180
Query: 149 KWIQAI 154
KW++ I
Sbjct: 181 KWLKQI 186
>gi|256084910|ref|XP_002578668.1| dimethyladenosine transferase [Schistosoma mansoni]
gi|360042877|emb|CCD78287.1| putative dimethyladenosine transferase [Schistosoma mansoni]
Length = 295
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 102/184 (55%), Gaps = 31/184 (16%)
Query: 4 KALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPG 63
+++ LPP+PS+R+II +Y +RA KQLSQNFL +P + +V+ AG + G V EVGPGPG
Sbjct: 16 ESIHLPPLPSLREIIHVYGIRAQKQLSQNFLLQPSSINGLVKCAGNLRGAYVLEVGPGPG 75
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHLGDVMSFTMQNMF--- 117
ITR+IL + P + ++E D RF P L L A+ + + D++ F + +F
Sbjct: 76 GITRAILQKAPRHVAVVELDRRFIPGLQELRLAALEMGTQMDIYRQDILKFNCEGIFPIS 135
Query: 118 -----------------------SEDRRRDWSEGL--PGIRIIGNLPFNVSTPLIIKWIQ 152
SE++ E + P + +IGNLPFN+STPLI +W+
Sbjct: 136 SMTGAGAWDESPEVVNSNLVKSTSENQNETALEKVSSPRLCVIGNLPFNISTPLISQWLH 195
Query: 153 AISE 156
I+E
Sbjct: 196 DIAE 199
>gi|254462138|ref|ZP_05075554.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2083]
gi|206678727|gb|EDZ43214.1| dimethyladenosine transferase [Rhodobacteraceae bacterium HTCC2083]
Length = 280
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 11/142 (7%)
Query: 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSI 69
P+P +RD+I+ ++L A K L QNFL + LT KI R AG ++ +V E+GPGPG +TR +
Sbjct: 6 PLPPLRDVIERHELSARKSLGQNFLLDLNLTAKIARQAGDLSQCDVLEIGPGPGGLTRGL 65
Query: 70 LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129
L+ +++ IEKD R P LD +AQA P +H GD + +
Sbjct: 66 LSEGARKVLAIEKDARCLPALDEIAQAYPNRLHVIEGDALGLDPLAHLT----------- 114
Query: 130 PGIRIIGNLPFNVSTPLIIKWI 151
P IR+ NLP+NV T L+I+W+
Sbjct: 115 PPIRVASNLPYNVGTELLIRWL 136
>gi|154253780|ref|YP_001414604.1| dimethyladenosine transferase [Parvibaculum lavamentivorans DS-1]
gi|154157730|gb|ABS64947.1| dimethyladenosine transferase [Parvibaculum lavamentivorans DS-1]
Length = 281
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 83/144 (57%), Gaps = 11/144 (7%)
Query: 9 PPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRS 68
PP+P +R++I Y L K L QNFL + LT +I R AG + G +V EVGPGPG +TR+
Sbjct: 6 PPLPPLREVIARYGLAPQKSLGQNFLLDLNLTGRIARAAGVLDGYDVVEVGPGPGGLTRA 65
Query: 69 ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128
+L+ R++ IE+D R L+ ++ A P + GD + M+++ +
Sbjct: 66 LLDNGARRVIAIERDRRCIAALEEISAAYPGRLVIVEGDALEVDMKSLVTSP-------- 117
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQ 152
RI+ NLP+NV TPL++ W+Q
Sbjct: 118 ---ARIVANLPYNVGTPLLVGWLQ 138
>gi|119383648|ref|YP_914704.1| dimethyladenosine transferase [Paracoccus denitrificans PD1222]
gi|166221685|sp|A1B0G4.1|RSMA_PARDP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|119373415|gb|ABL69008.1| dimethyladenosine transferase [Paracoccus denitrificans PD1222]
Length = 282
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + LRA KQL QNFL + LT KI R AG +TG +V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIARHDLRAKKQLGQNFLLDLNLTAKIARAAGDLTGCDVIEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ IEKD R P L +A A P + GD + + P
Sbjct: 67 AEGARHVLAIEKDARALPALAEIATAYPGRLEVIHGDALEIDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IRI+ NLP+NV T L+I+W+
Sbjct: 116 PIRIVANLPYNVGTELLIRWL 136
>gi|218531855|ref|YP_002422671.1| dimethyladenosine transferase [Methylobacterium extorquens CM4]
gi|218524158|gb|ACK84743.1| dimethyladenosine transferase [Methylobacterium extorquens CM4]
Length = 296
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 10/161 (6%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
M+ +AL +P +R++++ + L K L QNFLF+ LT +I R+AG + G V EVGP
Sbjct: 1 MSTEALSTDGLPPLREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGP 60
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120
GPG +TR++L R+V IE+DPR P L +A P + D + F + + E
Sbjct: 61 GPGGLTRALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVGEG 120
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFP 161
+RI+ NLP+NV+T L+ W+ A + + +P
Sbjct: 121 P----------VRIVANLPYNVATVLLTGWLGADTRDEAWP 151
>gi|340029416|ref|ZP_08665479.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Paracoccus sp. TRP]
Length = 282
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I + LRA KQL QNFL + LT KI R AG + G +V EVGPGPG +TR +L
Sbjct: 7 LPPLRDVIARHDLRAKKQLGQNFLLDLNLTAKIARAAGDLAGCDVIEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ IEKD R P L +A A P + GD + + P
Sbjct: 67 AEGARHVLAIEKDARALPALAEIASAYPGRLTVIHGDALEIDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IRI+ NLP+NV T L+I+W+
Sbjct: 116 PIRIVANLPYNVGTELLIRWL 136
>gi|254562982|ref|YP_003070077.1| dimethyladenosine transferase [Methylobacterium extorquens DM4]
gi|254270260|emb|CAX26254.1| dimethyladenosine transferase [Methylobacterium extorquens DM4]
Length = 296
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 10/161 (6%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
M+ +AL +P +R++++ + L K L QNFLF+ LT +I R+AG + G V EVGP
Sbjct: 1 MSTEALNTDGLPPLREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGP 60
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120
GPG +TR++L R+V IE+DPR P L +A P + D + F + + E
Sbjct: 61 GPGGLTRALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVGEG 120
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFP 161
+RI+ NLP+NV+T L+ W+ A + + +P
Sbjct: 121 P----------VRIVANLPYNVATVLLTGWLGADTRDEAWP 151
>gi|414343062|ref|YP_006984583.1| KsgA [Gluconobacter oxydans H24]
gi|411028397|gb|AFW01652.1| KsgA [Gluconobacter oxydans H24]
gi|453330397|dbj|GAC87625.1| dimethyladenosine transferase [Gluconobacter thailandicus NBRC
3255]
Length = 274
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 25/204 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PS++D I+++ L A K L Q+FL +P + +IV G +TG V E+GPGPG +TR++L
Sbjct: 3 LPSLKDTIQVHGLDAKKSLGQHFLLDPGICARIVSLGGDLTGRSVVEIGPGPGGLTRALL 62
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ AR+ +E D R P LD LA+ P +H D + ++ R
Sbjct: 63 DSPAARVDAVEIDERAWPLLDELAEHYPDRLHIVRQDALKLDAASLAPAPR--------- 113
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISE----NLLFPKHKRQLVVSLLERACVKPILRPY-Q 185
+II NLP+NV+TPL++ W++ + +L+F QL V+ ER C P Y +
Sbjct: 114 --QIIANLPYNVATPLLVGWLKQAASWERLSLMF-----QLEVA--ERICADPDTSAYGR 164
Query: 186 LSVQEFGQICLAYRDMCEEMPGLY 209
L+V Q C + PG +
Sbjct: 165 LAV--LAQWCASCSVALRIPPGAF 186
>gi|240140378|ref|YP_002964857.1| dimethyladenosine transferase [Methylobacterium extorquens AM1]
gi|418062623|ref|ZP_12700391.1| dimethyladenosine transferase [Methylobacterium extorquens DSM
13060]
gi|240010354|gb|ACS41580.1| dimethyladenosine transferase [Methylobacterium extorquens AM1]
gi|373563829|gb|EHP89989.1| dimethyladenosine transferase [Methylobacterium extorquens DSM
13060]
Length = 296
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 10/161 (6%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
M+ +AL +P +R++++ + L K L QNFLF+ LT +I R+AG + G V EVGP
Sbjct: 1 MSTEALSTDGLPPLREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGP 60
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120
GPG +TR++L R+V IE+DPR P L +A P + D + F + + +
Sbjct: 61 GPGGLTRALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVGDG 120
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFP 161
+RI+ NLP+NV+T L+ W+ A + + +P
Sbjct: 121 P----------VRIVANLPYNVATVLLTGWLGADTRDEAWP 151
>gi|163853045|ref|YP_001641088.1| dimethyladenosine transferase [Methylobacterium extorquens PA1]
gi|163664650|gb|ABY32017.1| dimethyladenosine transferase [Methylobacterium extorquens PA1]
Length = 296
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 10/161 (6%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
M+ +AL +P +R++++ + L K L QNFLF+ LT +I R+AG + G V EVGP
Sbjct: 1 MSTEALSTDGLPPLREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGP 60
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120
GPG +TR++L R+V IE+DPR P L +A P + D + F + + +
Sbjct: 61 GPGGLTRALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVGDG 120
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFP 161
+RI+ NLP+NV+T L+ W+ A + + +P
Sbjct: 121 P----------VRIVANLPYNVATVLLTGWLGADTRDEAWP 151
>gi|149914652|ref|ZP_01903182.1| dimethyladenosine transferase [Roseobacter sp. AzwK-3b]
gi|149811445|gb|EDM71280.1| dimethyladenosine transferase [Roseobacter sp. AzwK-3b]
Length = 279
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I + L A K L QNFL + LT KI R AG +TG++V E+GPGPG +TR +L
Sbjct: 7 LPPLRDVIAQHGLSARKALGQNFLLDLNLTSKIARAAGDLTGSDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ IEKD R P LD +AQA P + D + + P
Sbjct: 67 AEGARHVLAIEKDARCLPALDEIAQAYPGRLTVLNADALQVDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I+++ NLP+NV T L+I+W+
Sbjct: 116 PIKVVANLPYNVGTELLIRWL 136
>gi|260576766|ref|ZP_05844751.1| dimethyladenosine transferase [Rhodobacter sp. SW2]
gi|259021018|gb|EEW24329.1| dimethyladenosine transferase [Rhodobacter sp. SW2]
Length = 280
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R +I + L A KQL QNFL + LT +I R AG ++G +V EVGPGPG +TR +L
Sbjct: 7 LPPLRAVIAAHDLVAKKQLGQNFLLDLNLTARIARAAGDLSGCDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ +EKD R P L +A A P + GD ++ + +P
Sbjct: 67 AEGARRVLAVEKDARCLPALAEIAAAYPGRLEVMQGDALALDVAAHL-----------VP 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I+I+ NLP+NV T L+I+W+
Sbjct: 116 PIKIVANLPYNVGTELLIRWL 136
>gi|114328859|ref|YP_746016.1| dimethyladenosine transferase [Granulibacter bethesdensis CGDNIH1]
gi|114317033|gb|ABI63093.1| dimethyladenosine transferase [Granulibacter bethesdensis CGDNIH1]
Length = 286
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 85/169 (50%), Gaps = 14/169 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I + L A K L Q+FL +P L +IVR AG + G E+GPGPG +TR++L
Sbjct: 16 LPPLRDVIARHGLEARKALGQHFLLDPHLMARIVREAGPMQGRTAIEIGPGPGGLTRALL 75
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R+V IE D R P L+ LA P + D M + + + R
Sbjct: 76 ETAAERVVAIELDHRAIPALEELAGFYPDRLTVLEADAMRADLGTLTTGPR--------- 126
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKP 179
RI+ NLP+NV TPL++ W++ + LF + ER C P
Sbjct: 127 --RIVANLPYNVGTPLLVGWLR---QAALFESMTLMFQQEVAERICAAP 170
>gi|399043141|ref|ZP_10737566.1| dimethyladenosine transferase [Rhizobium sp. CF122]
gi|398058388|gb|EJL50286.1| dimethyladenosine transferase [Rhizobium sp. CF122]
Length = 275
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ Y L A K L QNFL + LT K+ R AG++ G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRYGLDARKALGQNFLLDLNLTQKVARTAGSLEGVTVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++V +E+D R P L +A P + GD + + + E R
Sbjct: 67 ALGAKKVVAVERDSRCLPALAEIADHYPGRLEVIEGDALKTDFEALAPEGR--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ WI
Sbjct: 118 -VKIIANLPYNVGTQLLVNWI 137
>gi|418941019|ref|ZP_13494361.1| Ribosomal RNA small subunit methyltransferase A [Rhizobium sp.
PDO1-076]
gi|375052324|gb|EHS48731.1| Ribosomal RNA small subunit methyltransferase A [Rhizobium sp.
PDO1-076]
Length = 275
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I + L A K L QNFL + LT K+ R AG++ G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIARHGLDAKKALGQNFLLDLNLTQKVARTAGSLEGVTVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ +E+DPR P L +A+ P + GD M ++M ++
Sbjct: 67 ALGAKKVIAVERDPRCLPALAEVAEHYPGRLEVIEGDAMKTDFESMAADGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L+I W+
Sbjct: 118 -VKIIANLPYNVGTQLLINWL 137
>gi|255262783|ref|ZP_05342125.1| dimethyladenosine transferase [Thalassiobium sp. R2A62]
gi|255105118|gb|EET47792.1| dimethyladenosine transferase [Thalassiobium sp. R2A62]
Length = 282
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P + ++I+ + L A K L QNFL + LT KI R AG ++ +V E+GPGPG +TR +L
Sbjct: 7 LPPLSEVIQTHGLAAKKSLGQNFLLDLNLTAKIARQAGDLSDCDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKDPR P LD ++QA P +H GD + + P
Sbjct: 67 AEGARRVLAIEKDPRCLPALDEISQAYPNRLHVIEGDALDIDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR+ NLP+NV T L+++W+
Sbjct: 116 PIRVSANLPYNVGTELLVRWL 136
>gi|320166640|gb|EFW43539.1| dimethyladenosine transferase 1 [Capsaspora owczarzaki ATCC 30864]
Length = 412
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 6 LRLPPMPSIR--DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPG 63
++LP +PS+ D+I+LY L A QLSQNF+ + +T++++ A + V EVG GPG
Sbjct: 1 MQLPKLPSVAVADLIRLYGLSAKSQLSQNFILDLNVTNRLIAPA-KLKDAIVIEVGSGPG 59
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE-DRR 122
++TRSIL P ++ IEKD RF P L +LA+A+ + D+++ + + +
Sbjct: 60 ALTRSILEAGPKKVFAIEKDRRFLPSLQLLAEAAEGRMQVVHHDILTLDYTKLLAPLVKP 119
Query: 123 RDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ 152
+ WSE G+ IIGNLPFN+ST L++ +
Sbjct: 120 QPWSEPSNGVYIIGNLPFNISTRLLVDLVH 149
>gi|398382048|ref|ZP_10540147.1| dimethyladenosine transferase [Rhizobium sp. AP16]
gi|397718148|gb|EJK78741.1| dimethyladenosine transferase [Rhizobium sp. AP16]
Length = 275
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT K+ R AG++ G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGSLEGVTVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
A+++ IE+D R P L +A P + GD + M SE
Sbjct: 67 ALGAAKVIAIERDARCLPALAEIADHYPGRLEVIEGDALKTDFAGMASEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ W+
Sbjct: 118 -VKIIANLPYNVGTQLLVNWL 137
>gi|222085448|ref|YP_002543978.1| dimethyladenosine transferase [Agrobacterium radiobacter K84]
gi|221722896|gb|ACM26052.1| dimethyladenosine transferase [Agrobacterium radiobacter K84]
Length = 276
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT K+ R AG++ G V EVGPGPG +TR+IL
Sbjct: 8 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGSLEGVTVFEVGPGPGGLTRAIL 67
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
A+++ IE+D R P L +A P + GD + M SE
Sbjct: 68 ALGAAKVIAIERDARCLPALAEIADHYPGRLEVIEGDALKTDFAGMASEGP--------- 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ W+
Sbjct: 119 -VKIIANLPYNVGTQLLVNWL 138
>gi|146277163|ref|YP_001167322.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17025]
gi|166221694|sp|A4WRK3.1|RSMA_RHOS5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|145555404|gb|ABP70017.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17025]
Length = 278
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 17/166 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A KQL QNFL + LT KI R AG + G++V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLKGSDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R P L +A A P + D + + + P
Sbjct: 67 AEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAARLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAI------SENLLFPKHKRQLVVS 170
IRI+ NLP+NV T L+ +W+ + S L+F K + +V+
Sbjct: 116 PIRIVANLPYNVGTELLTRWLSSGWPPFWESLTLMFQKEVAERIVA 161
>gi|407782419|ref|ZP_11129632.1| dimethyladenosine transferase [Oceanibaculum indicum P24]
gi|407206149|gb|EKE76111.1| dimethyladenosine transferase [Oceanibaculum indicum P24]
Length = 283
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 15/157 (9%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I L A KQL QNFL + LT +I R+AG +T V EVGPGPG +TR++L
Sbjct: 11 LPPLREVIAANDLGAKKQLGQNFLLDLNLTGRIARSAGDLTQGTVIEVGPGPGGLTRALL 70
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R+V IE+DPR L L +A+ + D ++ + + R
Sbjct: 71 LAGARRVVAIERDPRCIAALQPLVEAAAGRLTLIEADALTVDIATLGPAPR--------- 121
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISE----NLLFPKH 163
RI+ NLP+NV+TPL++ W+ A+ E L+F K
Sbjct: 122 --RIVANLPYNVATPLLMGWLDALPELQSMTLMFQKE 156
>gi|39936129|ref|NP_948405.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009]
gi|192291847|ref|YP_001992452.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1]
gi|62900541|sp|Q6N5B4.1|RSMA_RHOPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226732615|sp|B3Q9S4.1|RSMA_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|39649983|emb|CAE28507.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009]
gi|192285596|gb|ACF01977.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1]
Length = 287
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 82/143 (57%), Gaps = 10/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT +I R AG + G V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLEGVTVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE+D R L+ +A P + GD M F + + + DR
Sbjct: 67 ATGAKRVIAIERDERALGALEEIAAHYPGRLDIISGDAMEFDPRPLLNGDR--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RI+ NLP+N++TPL+I W+ A
Sbjct: 118 -ARIVANLPYNIATPLLIGWLCA 139
>gi|408379367|ref|ZP_11176961.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Agrobacterium albertimagni AOL15]
gi|407746851|gb|EKF58373.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Agrobacterium albertimagni AOL15]
Length = 275
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 14/143 (9%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I + L A K L QNF+ + LT K+ RNAG++ G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIGRHGLDAKKALGQNFILDLNLTQKVARNAGSLEGVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+DPR P L +A P + GD + + D++ P
Sbjct: 67 ALGAKKVIAIERDPRCLPALQEIADHYPGRLEVIEGDAL------------KTDFASVAP 114
Query: 131 G--IRIIGNLPFNVSTPLIIKWI 151
G ++II NLP+NV T L++ W+
Sbjct: 115 GEPVKIIANLPYNVGTQLLVNWL 137
>gi|188583141|ref|YP_001926586.1| dimethyladenosine transferase [Methylobacterium populi BJ001]
gi|179346639|gb|ACB82051.1| dimethyladenosine transferase [Methylobacterium populi BJ001]
Length = 291
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 10/161 (6%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
M+ +AL +P +R++++ + L K L QNFLF+ LT +I R+AG + G V EVGP
Sbjct: 1 MSLEALSADGLPPLREVVRRHGLEPKKALGQNFLFDLNLTGRIARSAGALEGVTVVEVGP 60
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120
GPG +TR++L R+V IE+DPR P L +A P + D + F + + +
Sbjct: 61 GPGGLTRALLAAGAKRVVAIERDPRALPALAEIAAHYPGRLDVIDADAVGFDPRPLVGDG 120
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFP 161
+RI+ NLP+NV+T L+ W+ A + + +P
Sbjct: 121 P----------VRIVANLPYNVATVLLTGWLGAETRDERWP 151
>gi|221639320|ref|YP_002525582.1| dimethyladenosine transferase [Rhodobacter sphaeroides KD131]
gi|429206373|ref|ZP_19197639.1| dimethyltransferase [Rhodobacter sp. AKP1]
gi|254807881|sp|B9KST5.1|RSMA_RHOSK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|221160101|gb|ACM01081.1| Dimethyladenosine transferase [Rhodobacter sphaeroides KD131]
gi|428190414|gb|EKX58960.1| dimethyltransferase [Rhodobacter sp. AKP1]
Length = 278
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 17/166 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A KQL QNFL + LT KI R AG +T ++V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R P L +A A P + D + + + P
Sbjct: 67 AEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDLAARLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAI------SENLLFPKHKRQLVVS 170
IRI+ NLP+NV T L+ +W+ + S L+F K + +V+
Sbjct: 116 PIRIVANLPYNVGTELLTRWLSSDWPPFWESLTLMFQKEVAERIVA 161
>gi|407769923|ref|ZP_11117296.1| dimethyladenosine transferase [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407287067|gb|EKF12550.1| dimethyladenosine transferase [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 288
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 15/164 (9%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I ++L A K+ QNFLF+ LT +I R A + V E+GPGPG +TR++L
Sbjct: 16 LPPLRDVIATHELSAQKKFGQNFLFDLNLTGRIARAAAPLDDATVIEIGPGPGGLTRALL 75
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
L +IE+DPR P L+ ++ P +H GD + + ++ R
Sbjct: 76 YHGAKNLTVIERDPRCQPVLEQISNHYPGALHVIDGDALDVDVTSLGPAPR--------- 126
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISE----NLLFPKHKRQLVVS 170
+I+ NLP+NV T L++ W+ I + L+F K + VV+
Sbjct: 127 --KIVANLPYNVGTQLLLGWLMQIDQFASLTLMFQKEVAERVVA 168
>gi|77463462|ref|YP_352966.1| dimethyladenosine transferase [Rhodobacter sphaeroides 2.4.1]
gi|119365057|sp|Q3J2B9.1|RSMA_RHOS4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|77387880|gb|ABA79065.1| dimethyladenosine transferase [Rhodobacter sphaeroides 2.4.1]
Length = 278
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 24/180 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A KQL QNFL + LT KI R AG +T ++V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R P L +A A P + D + + + P
Sbjct: 67 AEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAARLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAI------SENLLFPKHKRQLVVSLLERACVKPILRPY 184
IRI+ NLP+NV T L+ +W+ + S L+F K + ER KP + Y
Sbjct: 116 PIRIVANLPYNVGTELLTRWLSSDWPPFWESLTLMFQKE-------VAERIVAKPGSKAY 168
>gi|332558339|ref|ZP_08412661.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rhodobacter sphaeroides WS8N]
gi|332276051|gb|EGJ21366.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rhodobacter sphaeroides WS8N]
Length = 278
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 24/180 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A KQL QNFL + LT KI R AG +T ++V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R P L +A A P + D + + + P
Sbjct: 67 AEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAARLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAI------SENLLFPKHKRQLVVSLLERACVKPILRPY 184
IRI+ NLP+NV T L+ +W+ + S L+F K + ER KP + Y
Sbjct: 116 PIRIVANLPYNVGTELLTRWLSSDWPPFWESLTLMFQKE-------VAERIVAKPGSKAY 168
>gi|316933703|ref|YP_004108685.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1]
gi|315601417|gb|ADU43952.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1]
Length = 287
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 10/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT +I R AG + G V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLDGVTVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE+D R L+ +A P + GD M F + + + +R
Sbjct: 67 ATGAKRVIAIERDERALGALEEIAAHYPGRLEIVSGDAMEFDPRPLLNGER--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RI+ NLP+N++TPL+I W+ A
Sbjct: 118 -ARIVANLPYNIATPLLIGWLCA 139
>gi|418406635|ref|ZP_12979954.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Agrobacterium tumefaciens 5A]
gi|358007128|gb|EHJ99451.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Agrobacterium tumefaciens 5A]
Length = 276
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFLF+ LT KI R AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAGPLDGVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ IE+D R P L + P + GD + + + G P
Sbjct: 67 SLGAKKVIAIERDSRCLPALAEIEAHYPGRLEVIEGDALKTDFEGLV--------PAGEP 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
+RII NLP+NV T L++ W+ +S L+F K Q +V+
Sbjct: 119 -VRIIANLPYNVGTQLLVNWLLPKEWPPFWLSMTLMFQKEVGQRIVA 164
>gi|259418690|ref|ZP_05742607.1| dimethyladenosine transferase [Silicibacter sp. TrichCH4B]
gi|259344912|gb|EEW56766.1| dimethyladenosine transferase [Silicibacter sp. TrichCH4B]
Length = 280
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I ++L A K L QNFL + LT KI R AG +TG +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ IEKD R P L +A+A P + GD + + P
Sbjct: 67 SEGARKVLAIEKDQRCLPALAEIAEAHPGRLEVINGDALKIDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR+ NLP+NV T L+++W+
Sbjct: 116 PIRVAANLPYNVGTELLVRWL 136
>gi|310816142|ref|YP_003964106.1| dimethyladenosine transferase [Ketogulonicigenium vulgare Y25]
gi|385233645|ref|YP_005794987.1| dimethyladenosine transferase [Ketogulonicigenium vulgare WSH-001]
gi|308754877|gb|ADO42806.1| dimethyladenosine transferase [Ketogulonicigenium vulgare Y25]
gi|343462556|gb|AEM40991.1| Dimethyladenosine transferase [Ketogulonicigenium vulgare WSH-001]
Length = 281
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFL + LT KI R AG ++G++V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIATHGLSAKKALGQNFLLDLNLTAKIARQAGDLSGSDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R P L+ +A A P + GD + + P
Sbjct: 67 AEGARRVLSIEKDERCIPALEEIADAYPGRFSYIQGDALQVDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR+ NLP+N+ T L+I+W+
Sbjct: 116 PIRVAANLPYNIGTELLIRWL 136
>gi|414166542|ref|ZP_11422774.1| ribosomal RNA small subunit methyltransferase A [Afipia
clevelandensis ATCC 49720]
gi|410892386|gb|EKS40178.1| ribosomal RNA small subunit methyltransferase A [Afipia
clevelandensis ATCC 49720]
Length = 288
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 84/143 (58%), Gaps = 10/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P + D+I+ ++L A K L QNFL + LT +I R+AG + G V E+GPGPG +TR++L
Sbjct: 7 LPPLSDVIRRFELSARKSLGQNFLLDLNLTSRIARSAGPLEGQTVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ R++ +E+D R P L+ +AQ P + D M+F + + +R
Sbjct: 67 AQGVKRVIAVERDVRAIPALEEIAQRYPGRLTIVNDDAMTFDPRPLLGGER--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
+I+ NLP+N++T L+I W+ A
Sbjct: 118 -AKIVANLPYNIATVLLIDWLCA 139
>gi|220925669|ref|YP_002500971.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060]
gi|219950276|gb|ACL60668.1| dimethyladenosine transferase [Methylobacterium nodulans ORS 2060]
Length = 283
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++++ + L K L QNFLF+ LT +I R AG + G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVVRAHDLMPRKALGQNFLFDLNLTGRIARAAGPLDGVTVVEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
AR++ IE+DPR P L +A P + D ++F + + G P
Sbjct: 66 AEGAARVIAIERDPRALPALAEIAAHYPGRLTVVEADALAFDPRPLVG---------GGP 116
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV TPL+ W+
Sbjct: 117 A-RIVANLPYNVGTPLLTGWL 136
>gi|427428825|ref|ZP_18918864.1| Dimethyladenosine transferase [Caenispirillum salinarum AK4]
gi|425881488|gb|EKV30175.1| Dimethyladenosine transferase [Caenispirillum salinarum AK4]
Length = 290
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 29/208 (13%)
Query: 3 AKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGP 62
+AL +P +RD+I + L A K L QNFL + LT +I R AG I V E+GPGP
Sbjct: 14 GEALAADGLPPLRDVIARHDLAARKSLGQNFLLDLNLTGRIARAAGAIDDGTVVEIGPGP 73
Query: 63 GSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRR 122
G +TR++L +++ IE+DPR P L +A+ P + D + + + R
Sbjct: 74 GGLTRALLYAGARKVIAIERDPRALPALAEIAERWPGRLEVIEADALEVDVTALGDGPR- 132
Query: 123 RDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE----NLLFPKHKRQLVVSLLERACVK 178
RI+ NLP+NV+TPL++ W++ + L+F K +++R K
Sbjct: 133 ----------RIVANLPYNVATPLLLGWLKRLDTLAGMTLMFQKE-------VVDRLVAK 175
Query: 179 PILRPYQLSVQEFGQICLAYRDMCEEMP 206
P +++G++ + + +C P
Sbjct: 176 P-------RTKDYGRLSVITQWLCHVEP 196
>gi|312113661|ref|YP_004011257.1| dimethyladenosine transferase [Rhodomicrobium vannielii ATCC 17100]
gi|311218790|gb|ADP70158.1| dimethyladenosine transferase [Rhodomicrobium vannielii ATCC 17100]
Length = 287
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R+IIK L A K L QNF+ + +T +I R AG + G V E+GPGPG +TR++L
Sbjct: 9 LPPLREIIKDASLSARKSLGQNFILDLNVTRRIARAAGPLNGATVLEIGPGPGGLTRALL 68
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ + IE+D RF P LD +A+AS D M +E
Sbjct: 69 IEGASGAIAIERDERFRPALDQIAEASGDRFRVTFADAMGIDYPAFAAETGAN------- 121
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
R++ NLP+N++TPLI+ W+
Sbjct: 122 --RLVANLPYNIATPLIVGWL 140
>gi|99080785|ref|YP_612939.1| dimethyladenosine transferase [Ruegeria sp. TM1040]
gi|118600897|sp|Q1GI39.1|RSMA_SILST RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|99037065|gb|ABF63677.1| dimethyladenosine transferase [Ruegeria sp. TM1040]
Length = 280
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I ++L A K L QNFL + LT KI R AG +TG +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ IEKD R P L+ +A A P + GD + + P
Sbjct: 67 SEGARKILAIEKDQRCLPALEDIAAAYPGRLEVINGDALEIDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR+ NLP+NV T L+++W+
Sbjct: 116 PIRVAANLPYNVGTELLVRWL 136
>gi|58038777|ref|YP_190741.1| dimethyladenosine transferase [Gluconobacter oxydans 621H]
gi|62900455|sp|Q5FU61.1|RSMA_GLUOX RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|58001191|gb|AAW60085.1| Putative dimethyladenosine transferase (16S rRNA dimethylase)
[Gluconobacter oxydans 621H]
Length = 303
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 22/173 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PS+RD I+ + L A K L Q+FL +P + +I G +TG V E+GPGPG +TR++L
Sbjct: 34 LPSLRDTIQAHGLDAKKSLGQHFLLDPGICARIAALGGDLTGRSVVEIGPGPGGLTRALL 93
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +R+ ++E D R P LD LA P +H D + + R
Sbjct: 94 DTPASRVDVVEIDERAWPLLDELATYYPDRLHVVRQDALKLDAATLAPAPR--------- 144
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISE----NLLFPKHKRQLVVSLLERACVKP 179
+II NLP+NV+TPL++ W++ S+ +L+F QL V+ ER C P
Sbjct: 145 --QIIANLPYNVATPLLVGWLRQASQWERLSLMF-----QLEVA--ERICAAP 188
>gi|338974172|ref|ZP_08629534.1| dimethyladenosine transferase [Bradyrhizobiaceae bacterium SG-6C]
gi|338232899|gb|EGP08027.1| dimethyladenosine transferase [Bradyrhizobiaceae bacterium SG-6C]
Length = 288
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 83/141 (58%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P + D+I+ ++L A K L QNFL + LT +I R+AG + G V E+GPGPG +TR++L
Sbjct: 7 LPPLSDVIRRFELSARKSLGQNFLLDLNLTSRIARSAGPLEGQTVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ R++ +E+D R P L+ +AQ P + D M+F + + +R
Sbjct: 67 AQGVKRVIAVERDERAIPALEEIAQRYPGRLTIVNDDAMTFDPRPLLGGER--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+I+ NLP+N++T L+I W+
Sbjct: 118 -AKIVANLPYNIATILLIDWL 137
>gi|254465027|ref|ZP_05078438.1| dimethyladenosine transferase [Rhodobacterales bacterium Y4I]
gi|206685935|gb|EDZ46417.1| dimethyladenosine transferase [Rhodobacterales bacterium Y4I]
Length = 280
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I ++L A K L QNFL + LT KI R AG +TG +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R P L +A A P GD + + P
Sbjct: 67 AEGARRVLAIEKDTRCLPALQEIADAYPGRFEVINGDALEIDPLEHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR+ NLP+NV T L+++W+
Sbjct: 116 PIRVAANLPYNVGTELLVRWL 136
>gi|402819451|ref|ZP_10869019.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [alpha
proteobacterium IMCC14465]
gi|402511598|gb|EJW21859.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [alpha
proteobacterium IMCC14465]
Length = 286
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 91/170 (53%), Gaps = 19/170 (11%)
Query: 9 PPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAG---TITGNEVCEVGPGPGSI 65
P +P +RD+I+ + L A K L QNF+ + LT +I R AG + N++ E+GPGPG +
Sbjct: 9 PSLPPLRDVIRDHDLHASKTLGQNFILDLNLTRRIARTAGHSGSTPLNKIVEIGPGPGGL 68
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TR +L + +IE D RF P L +A A P V +GD + D
Sbjct: 69 TRGLLMEGAQHVTVIETDDRFQPALCDIATAYPGRVSIMMGDALKINPD---------DL 119
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKW-----IQAISENLLFPKHKRQLVVS 170
++G +I+ NLP+NV+TPL+IKW I+ S L+F K Q + +
Sbjct: 120 TDGT--YKIVANLPYNVATPLLIKWLSQSPIRWDSLTLMFQKEVAQRICA 167
>gi|325292482|ref|YP_004278346.1| dimethyladenosine transferase [Agrobacterium sp. H13-3]
gi|325060335|gb|ADY64026.1| dimethyladenosine transferase [Agrobacterium sp. H13-3]
Length = 276
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFLF+ LT KI R AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAGPLDGVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ IE+D R P L + P + GD + + + G P
Sbjct: 67 SLGAKKVIAIERDSRCLPALAEIEAHYPGRLEVIEGDALKTDFEALV--------PAGEP 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
+RII NLP+NV T L++ W+ +S L+F K Q +V+
Sbjct: 119 -VRIIANLPYNVGTQLLVNWLLPKEWPPFWLSMTLMFQKEVGQRIVA 164
>gi|390449062|ref|ZP_10234674.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Nitratireductor aquibiodomus RA22]
gi|389664852|gb|EIM76336.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Nitratireductor aquibiodomus RA22]
Length = 276
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 21/170 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I Y L A K L QNFL + LT K+ R AG + G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVISRYGLAAKKSLGQNFLLDLNLTAKVARAAGDLEGATVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
R++ +E+D R CLD LA+ + P + GD M + + + +
Sbjct: 66 MAGAERVIAVERDER---CLDALAEVAAHYPGQLDVVSGDAMETDFAALATNAQGK---- 118
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWIQ-------AISENLLFPKHKRQLVVS 170
+RI+ NLP+N+ T L+++W+ S L+F + Q +V+
Sbjct: 119 ----VRIVANLPYNIGTELLVRWLTPGRWPPFYASMTLMFQREVAQRIVA 164
>gi|424880908|ref|ZP_18304540.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
WU95]
gi|392517271|gb|EIW42003.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
WU95]
Length = 275
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AGT+ + EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGTLEEATIVEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+DPR P L +A P + GD + + + E
Sbjct: 67 ALGARKVIAIERDPRCLPALAEIADHYPGRLEVIEGDALKIDFETLVPEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ W+
Sbjct: 118 -VKIIANLPYNVGTQLLVNWL 137
>gi|89070361|ref|ZP_01157668.1| dimethyladenosine transferase [Oceanicola granulosus HTCC2516]
gi|89044008|gb|EAR50183.1| dimethyladenosine transferase [Oceanicola granulosus HTCC2516]
Length = 281
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 85/167 (50%), Gaps = 18/167 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFL + LT KI R AG +T +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIATHGLSAKKALGQNFLLDLNLTAKIARAAGDLTAADVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+V IEKDPR P L +A A P + GD ++ + P
Sbjct: 67 ASGARHVVAIEKDPRCLPALAEIAAAYPGRLTVLEGDALATDATVHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISE-------NLLFPKHKRQLVVS 170
RI NLP+NV T L+++W+ S L+F K Q +V+
Sbjct: 116 PYRIAANLPYNVGTELLVRWLTPPSWPPAWESLTLMFQKEVAQRIVA 162
>gi|126462317|ref|YP_001043431.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17029]
gi|166221693|sp|A3PJZ3.1|RSMA_RHOS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|126103981|gb|ABN76659.1| dimethyladenosine transferase [Rhodobacter sphaeroides ATCC 17029]
Length = 278
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 17/166 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A +QL QNFL + LT KI R AG +T ++V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIRAHGLSAKRQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R P L +A A P + D + + + P
Sbjct: 67 AEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAARLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAI------SENLLFPKHKRQLVVS 170
IRI+ NLP+NV T L+ +W+ + S L+F K + +V+
Sbjct: 116 PIRIVANLPYNVGTELLTRWLSSDWPPFWESLTLMFQKEVAERIVA 161
>gi|410943494|ref|ZP_11375235.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Gluconobacter frateurii NBRC 101659]
Length = 274
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 92/178 (51%), Gaps = 22/178 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PS++D I+ + L A K L Q+FL +P + +IV G +TG V E+GPGPG +TR++L
Sbjct: 3 LPSLKDTIQAHGLDAKKSLGQHFLLDPGICARIVSLGGDLTGRSVVEIGPGPGGLTRALL 62
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
AR+ +E D R P LD LA P +H D + ++ R
Sbjct: 63 ESPAARVDAVEIDERAWPLLDELAGYYPDRLHVVRQDALKLDAASLAPAPR--------- 113
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISE----NLLFPKHKRQLVVSLLERACVKPILRPY 184
+II NLP+NV+TPL++ W++ + L+F QL V+ ER C P Y
Sbjct: 114 --QIIANLPYNVATPLLVGWLKQAASWERLALMF-----QLEVA--ERICAAPDTSAY 162
>gi|395792273|ref|ZP_10471711.1| ribosomal RNA small subunit methyltransferase A [Bartonella
vinsonii subsp. arupensis Pm136co]
gi|423714278|ref|ZP_17688537.1| ribosomal RNA small subunit methyltransferase A [Bartonella
vinsonii subsp. arupensis OK-94-513]
gi|395420790|gb|EJF87052.1| ribosomal RNA small subunit methyltransferase A [Bartonella
vinsonii subsp. arupensis OK-94-513]
gi|395432787|gb|EJF98762.1| ribosomal RNA small subunit methyltransferase A [Bartonella
vinsonii subsp. arupensis Pm136co]
Length = 276
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 80/143 (55%), Gaps = 9/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I +Y L+A K L QNFLF+ LT KI R AG I G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIDIYGLQAHKSLGQNFLFDLNLTSKIARQAGNIEGKPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE D RF P L + + P ++ D + +F + +
Sbjct: 66 AKG-AIVTAIEHDERFLPALLEIEKHYPQKLNLICNDALKQDFSKLFEKSLEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RII NLP+N+ T L++ W+ A
Sbjct: 119 --RIIANLPYNIGTQLLLNWLLA 139
>gi|417860461|ref|ZP_12505517.1| dimethyladenosine transferase [Agrobacterium tumefaciens F2]
gi|338823525|gb|EGP57493.1| dimethyladenosine transferase [Agrobacterium tumefaciens F2]
Length = 276
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFLF+ LT KI R AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAGPLDGVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ +E+D R P L + P + GD + + + G P
Sbjct: 67 SLGAKKVIAVERDSRCLPALAEIEAHYPGRLEVIEGDALKTDFEALI--------PTGEP 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
+RII NLP+NV T L++ W+ +S L+F K Q +V+
Sbjct: 119 -VRIIANLPYNVGTQLLVNWLLPKQWPPFWLSMTLMFQKEVGQRIVA 164
>gi|294678211|ref|YP_003578826.1| dimethyladenosine transferase [Rhodobacter capsulatus SB 1003]
gi|294477031|gb|ADE86419.1| dimethyladenosine transferase [Rhodobacter capsulatus SB 1003]
Length = 280
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I ++L A K L QNFL + LT KI R AG +TG +V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIATHELVAKKALGQNFLLDLNLTAKIARAAGDLTGCDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ +EKD R P L +A P + GD ++ + + P
Sbjct: 67 AEGARRVLAVEKDSRCLPALAEIAAHYPGRLEVINGDALAVDVLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IRI NLP+NV T L+I+W+
Sbjct: 116 PIRIAANLPYNVGTELLIRWL 136
>gi|241203944|ref|YP_002975040.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240857834|gb|ACS55501.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 275
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AGT+ + EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGTLDEATIVEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+DPR P L +A P + GD + + + E
Sbjct: 67 ALGARKVIAIERDPRCLPALAEIADHYPGRLEVIEGDALKIDFETLVPEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ W+
Sbjct: 118 -VKIIANLPYNVGTQLLVNWL 137
>gi|84500985|ref|ZP_00999220.1| dimethyladenosine transferase [Oceanicola batsensis HTCC2597]
gi|84391052|gb|EAQ03470.1| dimethyladenosine transferase [Oceanicola batsensis HTCC2597]
Length = 279
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFL + LT KI R AG ++G +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIATHGLAARKSLGQNFLLDLNLTAKIARQAGDLSGCDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R P L +A A P + GD + + P
Sbjct: 67 AEGARRVLAIEKDARCLPALAEIAAAYPRRLEVVNGDALEVDPLTRLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IRI+ NLP+NV T L+++W+
Sbjct: 116 PIRIVANLPYNVGTELLVRWL 136
>gi|409436687|ref|ZP_11263857.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
[Rhizobium mesoamericanum STM3625]
gi|408751611|emb|CCM75011.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
[Rhizobium mesoamericanum STM3625]
Length = 275
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT K+ R AG++ G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKVARTAGSLEGVTVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ +E+D R P L +A+ P + GD + + + +E
Sbjct: 67 ALGAKKVIAVERDSRCLPALSEIAEHYPERLEVLEGDALKTDFEALATEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ WI
Sbjct: 118 -VKIIANLPYNVGTQLLVNWI 137
>gi|114569772|ref|YP_756452.1| dimethyladenosine transferase [Maricaulis maris MCS10]
gi|122316226|sp|Q0AQC3.1|RSMA_MARMM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|114340234|gb|ABI65514.1| dimethyladenosine transferase [Maricaulis maris MCS10]
Length = 289
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 81/149 (54%), Gaps = 11/149 (7%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
+ L +P +RD+I + L A K Q+FL + LT KI R AG ++ ++ EVGPGPG +
Sbjct: 1 MSLDQLPPLRDVIASHDLGAKKSFGQHFLLDLNLTAKIARLAGDMSRDQAIEVGPGPGGL 60
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TR+IL A L+ +E D RF LD + AS + GD + + +
Sbjct: 61 TRAILAEGAASLLAVEMDSRFLGALDEINVASGGRLTVEQGDALEVDETALLTG------ 114
Query: 126 SEGLPGIRII-GNLPFNVSTPLIIKWIQA 153
PG ++I NLP+NV T L+IKW+QA
Sbjct: 115 ----PGDKVILSNLPYNVGTQLLIKWLQA 139
>gi|440793060|gb|ELR14257.1| dimethyladenosine transferase 1, mitochondrial, partial
[Acanthamoeba castellanii str. Neff]
Length = 270
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 93/162 (57%), Gaps = 4/162 (2%)
Query: 42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPV 101
K+ R AG + G+ V EVGPGPGS+TRS+L +++++EKD RF P L+ L QAS +
Sbjct: 1 KLARAAGPLRGSTVIEVGPGPGSLTRSLLTNGARKVIVVEKDKRFMPALETLQQASGGRL 60
Query: 102 HFHLGDVMSFTMQNMF-SEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLF 160
GD++ +++ +E + +W++ P +RI+GNLPF V+T L++KW++ I E
Sbjct: 61 ELVFGDMLKIDERDLLKNEPKAENWADESP-VRIVGNLPFAVATELLLKWLRQIPEREGP 119
Query: 161 PKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMC 202
H R + + + K I + E+G++ + + C
Sbjct: 120 FAHGRASMTLMFQLEVGKRI--EARSGTSEYGRLSVMTQQSC 159
>gi|218660682|ref|ZP_03516612.1| dimethyladenosine transferase [Rhizobium etli IE4771]
Length = 173
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 10/144 (6%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITR 67
L +P +RD+I+ + L A K L QNFL + LT KI R AG + G V EVGPGPG +TR
Sbjct: 4 LDGLPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGGLEGTTVFEVGPGPGGLTR 63
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
+IL +++ IE+D R P L +A P + GD + +++ E
Sbjct: 64 AILALGAKKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFESLAPESP------ 117
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ W+
Sbjct: 118 ----VKIIANLPYNVGTQLLVNWL 137
>gi|170743207|ref|YP_001771862.1| dimethyladenosine transferase [Methylobacterium sp. 4-46]
gi|168197481|gb|ACA19428.1| dimethyladenosine transferase [Methylobacterium sp. 4-46]
Length = 285
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 10/153 (6%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
M+A A+ +P +R++++ + L K L QNFLF+ LT +I R AG + G V EVGP
Sbjct: 1 MSADAVSADGLPPLREVVRAHDLMPRKALGQNFLFDLNLTGRIARAAGPLAGVTVVEVGP 60
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120
GPG +TR++L AR+V IE+D R P L +A P + D ++F + +
Sbjct: 61 GPGGLTRALLAEGAARVVAIERDERALPALAEIAAHYPGRLTVVQADALAFDPRPLV--- 117
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153
G RI+ NLP+NV T L+ W+ A
Sbjct: 118 -------GAGPARIVANLPYNVGTALLTGWLAA 143
>gi|15888443|ref|NP_354124.1| rRNA-adenine N6,N6-dimethyltransferase [Agrobacterium fabrum str.
C58]
gi|335036623|ref|ZP_08529948.1| dimethyladenosine transferase [Agrobacterium sp. ATCC 31749]
gi|27151578|sp|Q8UGD5.1|RSMA_AGRT5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|15156135|gb|AAK86909.1| rRNA-adenine N6,N6-dimethyltransferase [Agrobacterium fabrum str.
C58]
gi|333792006|gb|EGL63378.1| dimethyladenosine transferase [Agrobacterium sp. ATCC 31749]
Length = 276
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFLF+ LT KI R AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAGPLDGVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ +E+D R P L + P + GD + + + G P
Sbjct: 67 SLGAKKVIAVERDSRCLPVLAEIEAHYPGRLEVIEGDALKTDFEALV--------PAGEP 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
+RII NLP+NV T L++ W+ +S L+F K Q +V+
Sbjct: 119 -VRIIANLPYNVGTQLLVNWLLPREWPPFWLSMTLMFQKEVGQRIVA 164
>gi|392377604|ref|YP_004984763.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Azospirillum
brasilense Sp245]
gi|356879085|emb|CCC99983.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Azospirillum
brasilense Sp245]
Length = 288
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 98/184 (53%), Gaps = 25/184 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFL + LT +I R+AG +TG V E+GPGPG +TR++L
Sbjct: 20 LPPLREVIARFGLDARKALGQNFLLDLNLTGRIARSAGDMTGVTVVEIGPGPGGLTRALL 79
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ IE+D RF L + QA+ + GD + D + P
Sbjct: 80 ATKAKQVIAIERDHRFIEALQDVIQAADGRLSIVEGDALEV------------DPIQIAP 127
Query: 131 GIR-IIGNLPFNVSTPLIIKWIQAISE----NLLFPKHKRQLVVSLLERACVKPILRPY- 184
R I+ NLP+NV+TPL+I W+ I E L+F K + +R KP + Y
Sbjct: 128 APRVIVANLPYNVATPLLIGWLGRIEEFVSLTLMFQKE-------VADRLVAKPGSKAYG 180
Query: 185 QLSV 188
+LSV
Sbjct: 181 RLSV 184
>gi|407777044|ref|ZP_11124315.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Nitratireductor pacificus pht-3B]
gi|407301209|gb|EKF20330.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Nitratireductor pacificus pht-3B]
Length = 275
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I + L A K L QNFL + LT K+ R AG ++G V EVGPGPG +TR++L
Sbjct: 6 LPPLRDVIARHGLAAKKSLGQNFLLDLNLTAKVARAAGDLSGATVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
AR+V +E+D R L +A P + GD + + + G
Sbjct: 66 MGGAARVVAVERDERCLAALAEIADHYPGRLEVISGDALETDFAAL---------AAGYS 116
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+RI NLP+N+ T L+++W+
Sbjct: 117 NVRIAANLPYNIGTELLVRWL 137
>gi|159043734|ref|YP_001532528.1| dimethyladenosine transferase [Dinoroseobacter shibae DFL 12]
gi|189028806|sp|A8LI73.1|RSMA_DINSH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|157911494|gb|ABV92927.1| dimethyladenosine transferase [Dinoroseobacter shibae DFL 12]
Length = 280
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I +KL A K L QNFL + LT +I R G ++G +V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIAAHKLSAKKSLGQNFLLDLNLTARIARVPGDLSGADVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IEKD R P L +A A P + GD + S P
Sbjct: 67 AEGARKVLAIEKDARCLPALQQIAAAYPGRLEVIEGDALEVDATAYLS-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I I NLP+NV T L+++W+
Sbjct: 116 PIHIAANLPYNVGTELLVRWL 136
>gi|424909983|ref|ZP_18333360.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. viciae
USDA 2370]
gi|392846014|gb|EJA98536.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. viciae
USDA 2370]
Length = 276
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFLF+ LT KI R AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAGPLEGVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ +E+D R P L + P + GD + + + G P
Sbjct: 67 SLGAKKVIAVERDSRCLPALAEIEAHYPGRLEVIEGDALQTDFEALV--------PVGEP 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
+RII NLP+NV T L++ W+ +S L+F K Q +V+
Sbjct: 119 -VRIIANLPYNVGTQLLVNWLLPKQWPPFWLSMTLMFQKEVGQRIVA 164
>gi|418295926|ref|ZP_12907770.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Agrobacterium tumefaciens CCNWGS0286]
gi|355539358|gb|EHH08596.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Agrobacterium tumefaciens CCNWGS0286]
Length = 276
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFLF+ LT KI R AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAGPLDGVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ +E+D R P L + P + GD + + + G P
Sbjct: 67 SLGAKKVIAVERDSRCLPALAEIEAHYPGRLEVIEGDALQTDFEALV--------PVGEP 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
+RII NLP+NV T L++ W+ +S L+F K Q +V+
Sbjct: 119 -VRIIANLPYNVGTQLLVNWLLPKQWPPFWLSMTLMFQKEVGQRIVA 164
>gi|218458347|ref|ZP_03498438.1| dimethyladenosine transferase [Rhizobium etli Kim 5]
Length = 202
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGGLEGTTVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R P L +A P + GD + +++ E
Sbjct: 67 ALGAKKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFESLAPEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ W+
Sbjct: 118 -VKIIANLPYNVGTQLLVNWL 137
>gi|429769059|ref|ZP_19301185.1| dimethyladenosine transferase [Brevundimonas diminuta 470-4]
gi|429187974|gb|EKY28867.1| dimethyladenosine transferase [Brevundimonas diminuta 470-4]
Length = 268
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 86/168 (51%), Gaps = 24/168 (14%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PS+R+ + + L A K Q+FL + +T KIVR AG G V EVGPGPG +TR++L
Sbjct: 3 LPSLRETLDAHGLSAKKSFGQHFLLDLNVTRKIVRYAGPFDGRAVIEVGPGPGGLTRALL 62
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED----RRRDWS 126
++VL+EKDPRF P L L S N+ D + D
Sbjct: 63 ESDAGKVVLVEKDPRFIPLLSELDDGS--------------GRLNIVEADALKVKEADLV 108
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQA----ISENLLFPKHKRQLVVS 170
EG ++ NLP+NV TPL+IKW+ + L+F K + VV+
Sbjct: 109 EG--PAHLVSNLPYNVGTPLLIKWLTGPWSPCALTLMFQKEVAERVVA 154
>gi|148284255|ref|YP_001248345.1| dimethyladenosine transferase [Orientia tsutsugamushi str. Boryong]
gi|146739694|emb|CAM79504.1| dimethyladenosine transferase (rRNA methylation) [Orientia
tsutsugamushi str. Boryong]
Length = 273
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 12/146 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNA-GTITGNEVCEVGPGPGSITRSI 69
+P++ +KL+K+ A K L Q+FL + + +KIV A +ITG V EVGPGPG +TR+I
Sbjct: 4 LPTVSQHMKLHKITANKSLGQHFLLDSNICNKIVSVAPNSITGKVVLEVGPGPGGLTRAI 63
Query: 70 LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129
L P +L++IEKD F L + + GD ++F + N+ E R
Sbjct: 64 LAHNPKKLIVIEKDASFIELLHEIPTMPSSKLEVICGDALNFDLSNI--ESNR------- 114
Query: 130 PGIRIIGNLPFNVSTPLIIKWIQAIS 155
I II NLP+N+ T LI++W+ IS
Sbjct: 115 --IIIISNLPYNIGTQLIVQWLHQIS 138
>gi|83953609|ref|ZP_00962330.1| dimethyladenosine transferase [Sulfitobacter sp. NAS-14.1]
gi|83841554|gb|EAP80723.1| dimethyladenosine transferase [Sulfitobacter sp. NAS-14.1]
Length = 280
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L+A K L QNFL + LT KI R AG +T +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVINTHDLKARKSLGQNFLLDLNLTAKIARQAGDMTECDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ R++ IEKD R P L +A+A P + GD + + P
Sbjct: 67 SEGARRVLAIEKDKRCLPALAEIAEAYPDRLTVIEGDALEIDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IRI NLP+NV T L+++W+
Sbjct: 116 PIRIAANLPYNVGTELLVRWL 136
>gi|407774468|ref|ZP_11121766.1| Dimethyladenosine transferase [Thalassospira profundimaris WP0211]
gi|407282510|gb|EKF08068.1| Dimethyladenosine transferase [Thalassospira profundimaris WP0211]
Length = 289
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 23/183 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K+ QNFLF+ LT +I R A + V E+GPGPG +TR++L
Sbjct: 16 LPPLREVIATHDLSAQKKFGQNFLFDLNLTGRIARAAAPLDDATVIEIGPGPGGLTRALL 75
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
L +IE+DPR P L+ ++ P +H GD + + + R
Sbjct: 76 FNGAKNLTVIERDPRCQPVLEQISNHYPGALHVIDGDALEVDVTTLGPAPR--------- 126
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISE----NLLFPKHKRQLVVSLLERACVKPILRPY-Q 185
+I+ NLP+NV T L++ W+ I + L+F K + ER +P + Y +
Sbjct: 127 --KIVANLPYNVGTQLLLGWLMQIDQFASLTLMFQKE-------VAERVVARPKSKAYGR 177
Query: 186 LSV 188
LSV
Sbjct: 178 LSV 180
>gi|83591771|ref|YP_425523.1| dimethyladenosine transferase [Rhodospirillum rubrum ATCC 11170]
gi|386348460|ref|YP_006046708.1| dimethyladenosine transferase [Rhodospirillum rubrum F11]
gi|119365056|sp|Q2RXA9.1|RSMA_RHORT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|83574685|gb|ABC21236.1| dimethyladenosine transferase [Rhodospirillum rubrum ATCC 11170]
gi|346716896|gb|AEO46911.1| dimethyladenosine transferase [Rhodospirillum rubrum F11]
Length = 288
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 21/196 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A + L QNFLF+ LT +I R G I V E+GPGPG +TR++L
Sbjct: 16 LPPLREVIATHGLDARRSLGQNFLFDLNLTGRIARAGGEIDQGTVIEIGPGPGGLTRALL 75
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE+D R L +A P + GD + + + R
Sbjct: 76 GAGARRVIAIERDSRCRGVLAEIAAVWPGRLETIEGDALDIDVAALGEAPR--------- 126
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQE 190
R+I NLP+NV+TPL+I W++ S F + +++R +P ++
Sbjct: 127 --RVIANLPYNVATPLLIGWLRHASA---FERFVLMFQKEVVDRLAARP-------GTKD 174
Query: 191 FGQICLAYRDMCEEMP 206
+G++ + + +CE P
Sbjct: 175 YGRLSVITQWLCEVRP 190
>gi|254488687|ref|ZP_05101892.1| dimethyladenosine transferase [Roseobacter sp. GAI101]
gi|214045556|gb|EEB86194.1| dimethyladenosine transferase [Roseobacter sp. GAI101]
Length = 280
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I + L+A K L QNFL + LT +I R+AG +T +V E+GPGPG +TR++L
Sbjct: 7 LPPLRDVINTHDLKARKSLGQNFLLDLNLTARIARHAGDLTACDVLEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ ++ IEKD R P L +A A P + GD + P
Sbjct: 67 SEGARHVLAIEKDARCLPALAEIADAYPGRLTVIEGDALDIDPLAHLK-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IRI NLP+NV T L+++W+
Sbjct: 116 PIRIAANLPYNVGTELLVRWL 136
>gi|83942389|ref|ZP_00954850.1| dimethyladenosine transferase [Sulfitobacter sp. EE-36]
gi|83846482|gb|EAP84358.1| dimethyladenosine transferase [Sulfitobacter sp. EE-36]
Length = 280
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L+A K L QNFL + LT KI R AG +T +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVINTHDLKARKSLGQNFLLDLNLTAKIARQAGDMTECDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ R++ IEKD R P L +A+A P + GD + + P
Sbjct: 67 SEGARRVLAIEKDKRCLPALAEIAEAYPDRLTVIEGDALEIDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IRI NLP+NV T L+++W+
Sbjct: 116 PIRIAANLPYNVGTELLVRWL 136
>gi|13476521|ref|NP_108091.1| dimethyladenosine transferase [Mesorhizobium loti MAFF303099]
gi|27151594|sp|Q984S7.1|RSMA_RHILO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|14027282|dbj|BAB54236.1| dimethyladenosine transferase [Mesorhizobium loti MAFF303099]
Length = 279
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 18/170 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L+A K L QNFL + LT KI R+AG +T V EVGPGPG +TR++L
Sbjct: 6 LPPLRDVIERHGLQAKKALGQNFLLDLNLTGKIARSAGDLTNTAVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
+ R+V IE+D R CL LA+ S P + GD + + S
Sbjct: 66 SNGARRVVAIERDER---CLAALAEVSAHYPGRLEVVSGDALKTDFAALASAAGGASGQ- 121
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWIQAI-------SENLLFPKHKRQLVVS 170
+RI+ NLP+N+ T L+++W+ + S L+F + Q +V+
Sbjct: 122 ----VRIVANLPYNIGTELLVRWLTVVDWPPFYASMTLMFQREVAQRIVA 167
>gi|384494579|gb|EIE85070.1| hypothetical protein RO3G_09780 [Rhizopus delemar RA 99-880]
Length = 296
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 91/160 (56%), Gaps = 18/160 (11%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE--VCEVGPGPGSI 65
LP +PS+R++IKLY L A QLSQNF+ + +TDKIVR A I+ N V EVGPGPG +
Sbjct: 2 LPKLPSVRELIKLYGLSAKSQLSQNFILDKNITDKIVRTA-QISKNTPLVVEVGPGPGLL 60
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
+RSIL D T + L++AS G+ + N+ S+ +
Sbjct: 61 SRSIL------------DSGATNIVAQLSEASENRFRVVHGNALKVDYDNILSQIEKSSL 108
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWI-QAISENLLFPKHK 164
++ P I IIGNLPFN+++PL+++W+ Q S LF K
Sbjct: 109 ND-YP-IHIIGNLPFNIASPLLLRWLHQTASREGLFGTSK 146
>gi|300023222|ref|YP_003755833.1| dimethyladenosine transferase [Hyphomicrobium denitrificans ATCC
51888]
gi|299525043|gb|ADJ23512.1| dimethyladenosine transferase [Hyphomicrobium denitrificans ATCC
51888]
Length = 290
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 15/145 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG I+ + V E+GPGPG +TR++L
Sbjct: 10 LPPLRDVIERHGLAAKKSLGQNFLLDLNLTRKIARAAGDISKSTVVEIGPGPGGLTRALL 69
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ IE+D R LD + P + H GD + + DW+E +
Sbjct: 70 IEGAKNVIAIERDDRCLAALDEIVARYPGRLRVHAGDAL------------KTDWTELIA 117
Query: 131 G---IRIIGNLPFNVSTPLIIKWIQ 152
G + I NLP+N+++ L++ W++
Sbjct: 118 GAHPVTIAANLPYNIASVLLVDWLE 142
>gi|408788840|ref|ZP_11200554.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rhizobium lupini HPC(L)]
gi|408485278|gb|EKJ93618.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rhizobium lupini HPC(L)]
Length = 276
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 91/167 (54%), Gaps = 16/167 (9%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ ++L A K L QNFLF+ LT KI R AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHELDAKKSLGQNFLFDLNLTQKIARTAGPLEGVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ +E+D R CL LA+ + H + ++ D G P
Sbjct: 67 SLGAKKVIAVERDSR---CLPALAE-----IEAHYPGRLEVIERDALQTDFEALVPVGEP 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
+RII NLP+NV T L++ W+ +S L+F K Q +V+
Sbjct: 119 -VRIIANLPYNVGTQLLVNWLLPKQWPPFWLSMTLMFQKEVGQRIVA 164
>gi|190891131|ref|YP_001977673.1| dimethyladenosine transferase [Rhizobium etli CIAT 652]
gi|218515820|ref|ZP_03512660.1| dimethyladenosine transferase [Rhizobium etli 8C-3]
gi|226732613|sp|B3PUU6.1|RSMA_RHIE6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|190696410|gb|ACE90495.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
[Rhizobium etli CIAT 652]
Length = 275
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT K+ R AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ +E+D R P L +A P + GD + +++ E
Sbjct: 67 ALGAKKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKADFESLAPEG---------- 116
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ W+
Sbjct: 117 AVKIIANLPYNVGTQLLVNWL 137
>gi|195589589|ref|XP_002084534.1| GD14323 [Drosophila simulans]
gi|194196543|gb|EDX10119.1| GD14323 [Drosophila simulans]
Length = 381
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 83/154 (53%), Gaps = 43/154 (27%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
+RLPPMP+IR+++KLY+L+A KQLSQNFL + RLTDKI
Sbjct: 96 GMRLPPMPTIRELVKLYRLQARKQLSQNFLMDERLTDKI--------------------- 134
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPCPVHF--HLGDVMSFTMQNMFSEDR 121
RL+L+EKDPRF L +L + ASP + F H D++ F M+ +
Sbjct: 135 -----------RLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNMEQHIPDTS 183
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+R I +IGNLPF +ST L+I W+ ++
Sbjct: 184 QR--------IHLIGNLPFAISTRLLINWLDDLA 209
>gi|398831456|ref|ZP_10589634.1| dimethyladenosine transferase [Phyllobacterium sp. YR531]
gi|398212163|gb|EJM98772.1| dimethyladenosine transferase [Phyllobacterium sp. YR531]
Length = 273
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ ++L A K L QNFLF+ LT KI R AG + G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHELMARKSLGQNFLFDLNLTAKIARQAGELEGQTVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A ++ IE+D R L ++ P + GD M + + +
Sbjct: 66 AQG-ANVIAIERDERCLAALQEISDHYPGRLRVIPGDAMETDFAALAGDQK--------- 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
I+II NLP+NV TPL++ W+ A
Sbjct: 116 -IKIIANLPYNVGTPLLVGWLLA 137
>gi|395791215|ref|ZP_10470673.1| ribosomal RNA small subunit methyltransferase A [Bartonella
alsatica IBS 382]
gi|395408578|gb|EJF75188.1| ribosomal RNA small subunit methyltransferase A [Bartonella
alsatica IBS 382]
Length = 276
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 79/143 (55%), Gaps = 9/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I +Y L+A K L QNFLF+ LT KI AG + G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIDMYGLQAHKSLGQNFLFDLNLTSKIALQAGNLEGKPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A ++ IE+D RF P L + + P + D M +F +
Sbjct: 66 AKG-ATVIAIERDERFIPALLEIEKHYPKKLKVICNDAMQQNFSKLFEISPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RII NLP+N+ T L++ W+ A
Sbjct: 119 --RIIANLPYNIGTQLLLNWLLA 139
>gi|299133709|ref|ZP_07026903.1| dimethyladenosine transferase [Afipia sp. 1NLS2]
gi|298591545|gb|EFI51746.1| dimethyladenosine transferase [Afipia sp. 1NLS2]
Length = 283
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 10/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ Y L K L QNFLF+ LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIRKYDLAPRKSLGQNFLFDLNLTARIARAAGPLDDATVIEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ +E+D R P L+ +A+ P + GD + F M R
Sbjct: 67 ATGAKRVIAVERDDRAIPALEDIARHYPGRLEIVHGDAIDFDPTTMLDGAR--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RI+ NLP+N++T L+ W+ A
Sbjct: 118 -ARIVANLPYNIATLLLTGWLTA 139
>gi|254477153|ref|ZP_05090539.1| dimethyladenosine transferase [Ruegeria sp. R11]
gi|214031396|gb|EEB72231.1| dimethyladenosine transferase [Ruegeria sp. R11]
Length = 282
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ ++L A K L QNFL + LT KI R AG +T +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIETHQLLARKSLGQNFLLDLNLTAKIARQAGDLTDCDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ +EKD R P L +A A P + GD + + P
Sbjct: 67 AEGARKVLAVEKDSRCIPALAEVAAAYPGKLEVIEGDALEVNPLTHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IRI NLP+NV T L+++W+
Sbjct: 116 PIRIAANLPYNVGTELLVRWL 136
>gi|170746986|ref|YP_001753246.1| dimethyladenosine transferase [Methylobacterium radiotolerans JCM
2831]
gi|226732597|sp|B1LVB8.1|RSMA_METRJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|170653508|gb|ACB22563.1| dimethyladenosine transferase [Methylobacterium radiotolerans JCM
2831]
Length = 292
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R+++ + L K L QNFL++ LT +I R AG + G V EVGPGPG +TR++L
Sbjct: 7 LPPLREVVARHGLEPKKALGQNFLYDLNLTGRIARAAGPLAGVTVVEVGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
AR+V IE+DPR P L +A P + D ++F + + +
Sbjct: 67 AEGAARVVAIERDPRALPALAEIAAHYPGRLEVVDADALAFDPRPLVGDAP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L+ W+
Sbjct: 118 -ARIVANLPYNVGTALLTGWL 137
>gi|332185231|ref|ZP_08386980.1| dimethyladenosine transferase [Sphingomonas sp. S17]
gi|332014955|gb|EGI57011.1| dimethyladenosine transferase [Sphingomonas sp. S17]
Length = 274
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 18/173 (10%)
Query: 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSI 69
P+P +RD+I + L A K L QNFLF+ +L +I G +T EV E+GPGPG +TR++
Sbjct: 6 PLPPLRDVIARHGLSASKSLGQNFLFDGQLLARIAAIPGDLTDQEVLEIGPGPGGLTRAL 65
Query: 70 LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129
L R+ IE+D R P L L++A P + GD + +F EG
Sbjct: 66 LMAG-GRVTAIERDRRCIPALAELSEAFPGRLRVIEGDALRVNAPELF---------EGK 115
Query: 130 PGIRIIGNLPFNVSTPLIIKWIQAI------SENLLFPKHKRQLVVSLLERAC 176
P I+ NLP+NV TPL++ W+ S L+F K + +V+ +++
Sbjct: 116 P--HIVSNLPYNVGTPLLVGWLSGAWLPWWQSCTLMFQKEVAERIVAAADQSA 166
>gi|118600872|sp|Q28RD6.2|RSMA_JANSC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
Length = 289
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 77/146 (52%), Gaps = 13/146 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I + L A K L QNFL + LT KI R AG +T +V EVGPGPG +TR +L
Sbjct: 7 LPPLRDVIAAHGLSARKALGQNFLLDLNLTAKIARLAGDLTSVDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R+V +EKDPR P L + P + D + DW+ L
Sbjct: 67 AEGARRVVAVEKDPRCLPVLAEIEAIYPGRLKVLNADALEL------------DWAADLQ 114
Query: 131 GIR-IIGNLPFNVSTPLIIKWIQAIS 155
R I+ NLP+NV T L+++W+ S
Sbjct: 115 APRKIVANLPYNVGTELLVRWLTPAS 140
>gi|126736396|ref|ZP_01752138.1| dimethyladenosine transferase [Roseobacter sp. CCS2]
gi|126714217|gb|EBA11086.1| dimethyladenosine transferase [Roseobacter sp. CCS2]
Length = 278
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFL + LT KI R AG ++G +V E+GPGPG +TR +L
Sbjct: 5 LPPLREVIATHDLAAKKSLGQNFLLDLNLTAKIARLAGDLSGADVLEIGPGPGGLTRGLL 64
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKDPR P L +A P + GD ++ S+
Sbjct: 65 AEGARRVLAIEKDPRCMPALADIAARYPGRLQTINGDALTVNPLEHLSQP---------- 114
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I+I NLP+NV T L+++W+
Sbjct: 115 -IKIAANLPYNVGTELLVRWL 134
>gi|89054300|ref|YP_509751.1| dimethyladenosine transferase [Jannaschia sp. CCS1]
gi|88863849|gb|ABD54726.1| dimethyladenosine transferase [Jannaschia sp. CCS1]
Length = 305
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 77/146 (52%), Gaps = 13/146 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I + L A K L QNFL + LT KI R AG +T +V EVGPGPG +TR +L
Sbjct: 23 LPPLRDVIAAHGLSARKALGQNFLLDLNLTAKIARLAGDLTSVDVLEVGPGPGGLTRGLL 82
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R+V +EKDPR P L + P + D + DW+ L
Sbjct: 83 AEGARRVVAVEKDPRCLPVLAEIEAIYPGRLKVLNADALEL------------DWAADLQ 130
Query: 131 GIR-IIGNLPFNVSTPLIIKWIQAIS 155
R I+ NLP+NV T L+++W+ S
Sbjct: 131 APRKIVANLPYNVGTELLVRWLTPAS 156
>gi|86138688|ref|ZP_01057261.1| dimethyladenosine transferase [Roseobacter sp. MED193]
gi|85824748|gb|EAQ44950.1| dimethyladenosine transferase [Roseobacter sp. MED193]
Length = 281
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I ++L A K L QNFL + LT KI R AG ++ +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIDTHQLLARKSLGQNFLLDLNLTSKIARQAGDLSECDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ +EKD R P L +A+A P + GD + + P
Sbjct: 67 AEGARRVLAVEKDSRCMPALAEIAEAYPGRLQLINGDALDIDPLEHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+RI NLP+NV T L+++W+
Sbjct: 116 PVRIAANLPYNVGTELLVRWL 136
>gi|329890126|ref|ZP_08268469.1| dimethyladenosine transferase [Brevundimonas diminuta ATCC 11568]
gi|328845427|gb|EGF94991.1| dimethyladenosine transferase [Brevundimonas diminuta ATCC 11568]
Length = 268
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 89/165 (53%), Gaps = 18/165 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PS+R+ + + L A K Q+FL + +T KIVR AG G V EVGPGPG +TR++L
Sbjct: 3 LPSLRETLDAHGLSAKKSFGQHFLLDLNVTRKIVRYAGPFDGRAVIEVGPGPGGLTRALL 62
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++VL+EKDPRF P L L D S + + ++ + +E +
Sbjct: 63 ESDAGKVVLVEKDPRFIPLLSEL-------------DDGSGRLTIVEADALKVKEAELVE 109
Query: 131 G-IRIIGNLPFNVSTPLIIKWIQA----ISENLLFPKHKRQLVVS 170
G ++ NLP+NV TPL+IKW+ + L+F K + VV+
Sbjct: 110 GPAHLVSNLPYNVGTPLLIKWLTGPWTPCALTLMFQKEVAERVVA 154
>gi|440226093|ref|YP_007333184.1| dimethyladenosine transferase [Rhizobium tropici CIAT 899]
gi|440037604|gb|AGB70638.1| dimethyladenosine transferase [Rhizobium tropici CIAT 899]
Length = 275
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 17/167 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT K+ R AG++ G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGSLEGVTVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
A+++ +E+D R P L +A P + GD + + +
Sbjct: 67 ALGAAKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKTDFAALAPQGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAI-------SENLLFPKHKRQLVVS 170
++II NLP+NV+T L++ W+ S L+F K Q +V+
Sbjct: 118 -VKIIANLPYNVATQLLVNWLLPAQWPPFWQSLTLMFQKEVGQRIVA 163
>gi|427410518|ref|ZP_18900720.1| dimethyladenosine transferase [Sphingobium yanoikuyae ATCC 51230]
gi|425711061|gb|EKU74077.1| dimethyladenosine transferase [Sphingobium yanoikuyae ATCC 51230]
Length = 284
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 79/146 (54%), Gaps = 12/146 (8%)
Query: 9 PPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRS 68
P +P +RD+I + L+A K L QNFL + +L D+I G+I EVGPGPG +TR+
Sbjct: 7 PTLPPLRDVIAAHGLQASKALGQNFLLDEQLLDRITAIPGSIQDQPAFEVGPGPGGLTRA 66
Query: 69 ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128
IL R RLV +E+D R P L L A P + GD M D R +E
Sbjct: 67 IL-RAGGRLVAVERDRRCLPALAELELAFPGQLRVISGDAMEV--------DAR---AEA 114
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQAI 154
G II NLP+NV T L++ W+ A+
Sbjct: 115 GDGAHIIANLPYNVGTALLVGWLSAL 140
>gi|337269692|ref|YP_004613747.1| dimethyladenosine transferase [Mesorhizobium opportunistum WSM2075]
gi|336030002|gb|AEH89653.1| dimethyladenosine transferase [Mesorhizobium opportunistum WSM2075]
Length = 274
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 23/170 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ ++L+A K L QNFL + LT KI R AG +T + EVGPGPG +TR++L
Sbjct: 6 LPPLRDVIERHELQAKKALGQNFLLDLNLTSKIARAAGDLTNTTIIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
R++ IE+D R CL LA+ S P + GD + + +
Sbjct: 66 FNGARRVIAIERDER---CLAALAEVSEHYPGRLEIIAGDALKTDFAAL---------AA 113
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWIQAI-------SENLLFPKHKRQLVVS 170
G P +I+ NLP+N+ T L+I+W+ S L+F + Q +V+
Sbjct: 114 GAP-TKIVANLPYNIGTELLIRWLTVTDWPPFYASMTLMFQREVAQRIVA 162
>gi|398350756|ref|YP_006396220.1| ribosomal RNA small subunit methyltransferase A [Sinorhizobium
fredii USDA 257]
gi|390126082|gb|AFL49463.1| ribosomal RNA small subunit methyltransferase A [Sinorhizobium
fredii USDA 257]
Length = 274
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLDDVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++V IE+DPR P L ++ P + GD + + + +EG
Sbjct: 67 ALGAKKVVAIERDPRCLPALAEISTHYPGRLDVVEGDALKVDFETL---------AEG-- 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+RII NLP+NV T L++ W+
Sbjct: 116 PVRIIANLPYNVGTQLLVNWL 136
>gi|347756862|ref|YP_004864424.1| dimethyladenosine transferase [Micavibrio aeruginosavorus ARL-13]
gi|347589380|gb|AEP08422.1| dimethyladenosine transferase [Micavibrio aeruginosavorus ARL-13]
Length = 297
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I ++LRA K+L QNF+ + +TDKI R AG + G E+GPGPG +TR+++
Sbjct: 20 LPPLRDVIAAHELRAEKKLGQNFILDLNITDKIARAAGDLNGIVAIEIGPGPGGLTRALV 79
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ +E D R L L A+ + D + + ++ RR
Sbjct: 80 RSDADRVLAVEYDTRAIAALQGLKDAAGPRLDLVHADALKLNLLDLVPGSRR-------- 131
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
II NLP+N++TPL+I W++
Sbjct: 132 --AIIANLPYNIATPLLIGWLK 151
>gi|189182934|ref|YP_001936719.1| dimethyladenosine transferase [Orientia tsutsugamushi str. Ikeda]
gi|189179705|dbj|BAG39485.1| dimethyladenosine transferase [Orientia tsutsugamushi str. Ikeda]
Length = 273
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 82/146 (56%), Gaps = 12/146 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNA-GTITGNEVCEVGPGPGSITRSI 69
+P++ +KL+K+ A K L Q+FL + + +KIV A ITG V EVGPGPG +TR+I
Sbjct: 4 LPTVSQHMKLHKITANKSLGQHFLLDSNICNKIVSVAPNPITGKVVLEVGPGPGGLTRAI 63
Query: 70 LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129
L P +L++IEKD F L + + GD ++F + N+ E R
Sbjct: 64 LAHNPKKLIVIEKDASFIELLHEIPTMPSSKLEVICGDALNFDLSNI--ESNR------- 114
Query: 130 PGIRIIGNLPFNVSTPLIIKWIQAIS 155
I II NLP+N+ T LI++W+ IS
Sbjct: 115 --IIIISNLPYNIGTQLIVQWLHQIS 138
>gi|389694642|ref|ZP_10182736.1| dimethyladenosine transferase [Microvirga sp. WSM3557]
gi|388588028|gb|EIM28321.1| dimethyladenosine transferase [Microvirga sp. WSM3557]
Length = 286
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++++ + L A K L QNFLF+ LT +I R+AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLREVVRTHGLMAKKSLGQNFLFDLNLTSRIARSAGPLEDATVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R P L +A+ P + D ++F D R +GL
Sbjct: 67 AAGAKKVIAIERDSRCLPALAEIAEHYPGRLEVVEADALAF--------DPRPLVGDGL- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+RII NLP+NV T L+ W+
Sbjct: 118 -VRIIANLPYNVGTALLTGWL 137
>gi|328773161|gb|EGF83198.1| hypothetical protein BATDEDRAFT_85801 [Batrachochytrium
dendrobatidis JAM81]
Length = 326
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 106/212 (50%), Gaps = 22/212 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTIT--GNEV-CEVGPGPGSITR 67
+P + +I +Y + A K L QNFL P +TD I ++A G + EVGPGPG +TR
Sbjct: 3 LPKLPQLISIYNVHAKKALGQNFLLRPGVTDSIAQHAVAKKRDGKTLHVEVGPGPGGLTR 62
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE-------- 119
S+L LV +EKD P L +L + P F LGD++ Q +F++
Sbjct: 63 SLLKLGVTHLVAVEKDASVAPMLQILQASVPSRFRFLLGDMLESDQQVLFNQIMTEAVEC 122
Query: 120 DRRR--------DWSEGLPGIRIIGNLPFNVSTPLIIKWI-QAISENLLFPKHKRQLVVS 170
DR D + I+GNLP+++S+PL+ WI QA +E LF K ++ +
Sbjct: 123 DRLSQPNSNSNPDNQPHFDKVHIVGNLPYSISSPLLHMWIKQAATEKYLFSFPKTEMTL- 181
Query: 171 LLERACVKPILRPYQLSVQ-EFGQICLAYRDM 201
+L+R + I P V+ +C A+ D+
Sbjct: 182 MLQREVCERIAAPVGTKVRGRLSVLCQAFFDV 213
>gi|403530365|ref|YP_006664894.1| dimethyladenosine transferase [Bartonella quintana RM-11]
gi|403232437|gb|AFR26180.1| dimethyladenosine transferase [Bartonella quintana RM-11]
Length = 276
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I +Y L+A K L QNFLF+ LT KI AG I G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIDIYGLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A ++ IE+D R P L + + P + D + N+F +
Sbjct: 66 AKG-ALVIAIERDERCIPALLAIEKHYPKKLKLICNDALKQNFSNLFETYPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RII NLP+N+ T L++ W+
Sbjct: 119 --RIIANLPYNIGTQLLLNWL 137
>gi|154246772|ref|YP_001417730.1| dimethyladenosine transferase [Xanthobacter autotrophicus Py2]
gi|226732642|sp|A7IJ80.1|RSMA_XANP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|154160857|gb|ABS68073.1| dimethyladenosine transferase [Xanthobacter autotrophicus Py2]
Length = 288
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 23/170 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT +I R +G + G V EVGPGPG +TR++L
Sbjct: 7 LPPLRDVIRRHGLSAQKSLGQNFLLDLNLTGRIARASGPLEGATVVEVGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
R++ IE+D R CLD LA+ S P + GD + ++ + +
Sbjct: 67 ALGARRVIAIERDQR---CLDALAEVSDHYPGRLEVISGDALKVDVRPLVGDGE------ 117
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
+R++ NLP+N++T L+I W+ S L+F K + +V+
Sbjct: 118 ----VRVVANLPYNIATLLLIGWLSTDPWPPWFSSLTLMFQKEVAERIVA 163
>gi|393769701|ref|ZP_10358222.1| dimethyladenosine transferase [Methylobacterium sp. GXF4]
gi|392724880|gb|EIZ82224.1| dimethyladenosine transferase [Methylobacterium sp. GXF4]
Length = 284
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R+++ + L K L QNFL++ LT +I R AG + G V EVGPGPG +TR++L
Sbjct: 7 LPPLREVVARHGLEPKKALGQNFLYDLNLTGRIARAAGPLEGVTVVEVGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
AR+V IE+DPR P L +A P + D ++F + + +
Sbjct: 67 AEGAARVVAIERDPRALPALAEIAAHYPGRLDVVDADALAFDPRPLIGDGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L+ W+
Sbjct: 118 -ARIVANLPYNVGTALLTGWL 137
>gi|395780105|ref|ZP_10460572.1| ribosomal RNA small subunit methyltransferase A [Bartonella
washoensis 085-0475]
gi|395419372|gb|EJF85672.1| ribosomal RNA small subunit methyltransferase A [Bartonella
washoensis 085-0475]
Length = 276
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 9/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I Y L+A K L QNFLF+ LT KI AG I G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIDTYGLQAQKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + + P + D + +F +D +
Sbjct: 66 AKG-AIVAAIERDERCMPALLEIEKHYPQKLKLICNDALKQDFSKLFEKDAEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RII NLP+N+ T L++ W+ A
Sbjct: 119 --RIIANLPYNIGTKLLLNWLLA 139
>gi|86749595|ref|YP_486091.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2]
gi|119365054|sp|Q2IX80.1|RSMA_RHOP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|86572623|gb|ABD07180.1| dimethyladenosine transferase [Rhodopseudomonas palustris HaA2]
Length = 287
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 78/143 (54%), Gaps = 10/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+IK + L A K L QNFL + LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLRDVIKRHDLAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE+D R L+ +A P + D M F + + R
Sbjct: 67 ATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMEFDPRPLLGGAR--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RI+ NLP+N++TPL+I W+ A
Sbjct: 118 -ARIVANLPYNIATPLLIGWLCA 139
>gi|326386744|ref|ZP_08208365.1| dimethyladenosine transferase [Novosphingobium nitrogenifigens DSM
19370]
gi|326208797|gb|EGD59593.1| dimethyladenosine transferase [Novosphingobium nitrogenifigens DSM
19370]
Length = 281
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 9 PPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRS 68
P +P +RD++ + L A K L QNFLF+ +L D+I G + G +V EVGPGPG +TR+
Sbjct: 4 PTLPPLRDVVARHGLSAQKSLGQNFLFDEQLLDRIAAVPGKLAGADVLEVGPGPGGLTRA 63
Query: 69 ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128
+L R AR+ IE D R P L L +A P + GD M + +F +W
Sbjct: 64 LL-RAGARVTAIEMDRRCLPALAELGEAFPGQLRVIEGDAMKIAPETLFEG----EW--- 115
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQA 153
I NLP+NV T L W+
Sbjct: 116 ----HIAANLPYNVGTGLFTGWLSG 136
>gi|423711278|ref|ZP_17685598.1| ribosomal RNA small subunit methyltransferase A [Bartonella
washoensis Sb944nv]
gi|395415192|gb|EJF81627.1| ribosomal RNA small subunit methyltransferase A [Bartonella
washoensis Sb944nv]
Length = 276
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 9/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I Y L+A K L QNFLF+ LT KI AG I G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIDTYGLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + + P + D + +F +D +
Sbjct: 66 AKG-AIVAAIERDERCMPALLEIEKHYPQKLKLICNDALKQDFSKLFEKDAEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RII NLP+N+ T L++ W+ A
Sbjct: 119 --RIIANLPYNIGTKLLLNWLLA 139
>gi|126725345|ref|ZP_01741187.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2150]
gi|126704549|gb|EBA03640.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2150]
Length = 280
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P + D+I+ + L A K L QNFL + LT KI R AG + G++V E+GPGPG +TR +L
Sbjct: 7 LPPLSDVIETHGLAARKSLGQNFLLDLNLTSKIARQAGDLRGSDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R LD +A A P + GD +
Sbjct: 67 AEGARRVLAIEKDTRCIAALDEIASAYPNQLKTINGDALEANPLEHLQAP---------- 116
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I+++ NLP+NV T L+I+W+
Sbjct: 117 -IKVVANLPYNVGTELLIRWL 136
>gi|357027152|ref|ZP_09089239.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Mesorhizobium amorphae CCNWGS0123]
gi|355540965|gb|EHH10154.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Mesorhizobium amorphae CCNWGS0123]
Length = 278
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 19/170 (11%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L+A K L QNFL + LT KI R AG +T V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHGLQAKKALGQNFLLDLNLTGKIARAAGDLTETTVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
R+V IE+D R CL+ LAQ S P + GD + ++ SE
Sbjct: 66 FSGARRVVAIERDER---CLEALAQVSNHYPGRLEIIPGDALKTDFSSLAEAA-----SE 117
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWIQAI-------SENLLFPKHKRQLVVS 170
G ++I+ NLP+N+ T L+I+W+ S L+F + + +V+
Sbjct: 118 G-GQVKIVANLPYNIGTELLIRWLTVTAWPPFYASMTLMFQREVAERIVA 166
>gi|227821471|ref|YP_002825441.1| dimethyladenosine transferase [Sinorhizobium fredii NGR234]
gi|254807879|sp|C3M9C2.1|RSMA_RHISN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|227340470|gb|ACP24688.1| dimethyladenosine transferase [Sinorhizobium fredii NGR234]
Length = 296
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++V IE+DPR P L ++ P + GD + + + +EG
Sbjct: 67 ALGARKVVAIERDPRCLPALAEISAHYPGRLDVVEGDALKVDFERL---------AEG-- 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+RII NLP+NV T L++ W+
Sbjct: 116 PVRIIANLPYNVGTQLLVNWL 136
>gi|209885479|ref|YP_002289336.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5]
gi|337740912|ref|YP_004632640.1| ribosomal RNA small subunit methyltransferase A [Oligotropha
carboxidovorans OM5]
gi|386029929|ref|YP_005950704.1| ribosomal RNA small subunit methyltransferase A [Oligotropha
carboxidovorans OM4]
gi|226732605|sp|B6JGM4.1|RSMA_OLICO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|209873675|gb|ACI93471.1| dimethyladenosine transferase [Oligotropha carboxidovorans OM5]
gi|336094997|gb|AEI02823.1| ribosomal RNA small subunit methyltransferase A [Oligotropha
carboxidovorans OM4]
gi|336098576|gb|AEI06399.1| ribosomal RNA small subunit methyltransferase A [Oligotropha
carboxidovorans OM5]
Length = 282
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ Y L A K L QNFLF+ LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIRKYDLFARKSLGQNFLFDLNLTARIARAAGPLDDVTVIEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ +E+D R P L+ +A+ P + GD +F + +R
Sbjct: 67 ATGAKRVIAVERDERAIPALEEIARRYPGRLEIIHGDATTFDPTPLLQGER--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
RI+ NLP+N++T L+ W+
Sbjct: 118 -ARIVANLPYNIATLLLTGWLS 138
>gi|418056292|ref|ZP_12694345.1| Ribosomal RNA small subunit methyltransferase A [Hyphomicrobium
denitrificans 1NES1]
gi|353209511|gb|EHB74914.1| Ribosomal RNA small subunit methyltransferase A [Hyphomicrobium
denitrificans 1NES1]
Length = 287
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 93/182 (51%), Gaps = 16/182 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG I + + E+GPGPG +TR++L
Sbjct: 7 LPPLRDVIERHGLAAKKSLGQNFLLDLNLTRKIARAAGDIANSTIVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R LD +A P + H GD + DW++ +
Sbjct: 67 MEGAKQVIAIERDDRCLAALDDIAARYPGRLQVHSGDALEI------------DWTKLIA 114
Query: 131 G---IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QL 186
G + I NLP+N+++ L++ W++ F + + ER P + Y +L
Sbjct: 115 GAHPVTIAANLPYNIASLLLVGWLETEPWPPWFDRMVLMFQREVAERIIAAPHTKAYGRL 174
Query: 187 SV 188
SV
Sbjct: 175 SV 176
>gi|304392010|ref|ZP_07373952.1| dimethyladenosine transferase [Ahrensia sp. R2A130]
gi|303296239|gb|EFL90597.1| dimethyladenosine transferase [Ahrensia sp. R2A130]
Length = 279
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I ++L K L QNFL + +T KI R AG +T + V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIDRHELATKKSLGQNFLLDLNITMKIARAAGDLTRHTVLEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+V IE+D R P L ++ A P + GD ++ + + ++ G
Sbjct: 67 ASGAKHVVAIERDARCIPVLAEISDAYPGRLTVIEGDALALNHEQVLAD-------AGAS 119
Query: 131 G-IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKP 179
G ++I NLP+N++TPL WI + + + +R C +P
Sbjct: 120 GPVKIAANLPYNIATPLFTGWITGTNWPPFWNGMTLMFQREVAQRICAEP 169
>gi|378825419|ref|YP_005188151.1| dimethyladenosine transferase [Sinorhizobium fredii HH103]
gi|365178471|emb|CCE95326.1| dimethyladenosine transferase [Sinorhizobium fredii HH103]
Length = 274
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLDDITVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++V IE+DPR P L ++ P + GD + +++ EG
Sbjct: 67 ALGAKKVVAIERDPRCLPALAEISGHYPGRLDVVEGDALKVDFESL---------GEG-- 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+RII NLP+NV T L++ W+
Sbjct: 116 PVRIIANLPYNVGTQLLVNWL 136
>gi|417111499|ref|ZP_11964138.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
[Rhizobium etli CNPAF512]
gi|327188008|gb|EGE55238.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
[Rhizobium etli CNPAF512]
Length = 275
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT K+ R AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++V +E+D R P L +A P + GD + ++ E
Sbjct: 67 ALGAKKVVAVERDARCLPALAEIADHYPGRLEVIEGDALKTDFESQAPEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ W+
Sbjct: 118 -VKIIANLPYNVGTQLLVNWL 137
>gi|307946738|ref|ZP_07662073.1| dimethyladenosine transferase [Roseibium sp. TrichSKD4]
gi|307770402|gb|EFO29628.1| dimethyladenosine transferase [Roseibium sp. TrichSKD4]
Length = 280
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 89/168 (52%), Gaps = 19/168 (11%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFL + LT +I R+AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLREVIATHGLDAKKSLGQNFLLDLNLTSRIARSAGDLNGVTVLEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R CL LA+ + H + ++ D S G+
Sbjct: 67 AAGADRVIAIEKDTR---CLPALAE-----ISNHYDGKLEVISEDALKIDPT---SLGIS 115
Query: 131 G-IRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
G I+II NLP+NV T L+I WI S LLF K + +V+
Sbjct: 116 GPIKIIANLPYNVGTQLLINWITTENWPPFWTSLTLLFQKEVGERIVA 163
>gi|126739404|ref|ZP_01755097.1| dimethyladenosine transferase [Roseobacter sp. SK209-2-6]
gi|126719504|gb|EBA16213.1| dimethyladenosine transferase [Roseobacter sp. SK209-2-6]
Length = 291
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ ++L A K L QNFL + LT KI R AG ++ +V E+GPGPG +TR +L
Sbjct: 17 LPPLREVIETHQLSARKSLGQNFLLDLNLTAKIARQAGDLSECDVLEIGPGPGGLTRGLL 76
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ +EKD R P L ++ A P + GD + + P
Sbjct: 77 AEGARRVLAVEKDARCMPALAEISTAYPGQLEVINGDALEVDALAHLT-----------P 125
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+RI NLP+NV T L+++W+
Sbjct: 126 PVRIAANLPYNVGTELLVRWL 146
>gi|339503866|ref|YP_004691286.1| dimethyladenosine transferase KsgA [Roseobacter litoralis Och 149]
gi|338757859|gb|AEI94323.1| dimethyladenosine transferase KsgA [Roseobacter litoralis Och 149]
Length = 280
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R +I+ + L A K + QNFL + LT KI R AG ++ +V E+GPGPG +TR +L
Sbjct: 7 LPPLRSVIRDHDLSARKSMGQNFLLDLNLTAKIARQAGDLSACDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ R++ IEKD R P L +A A P + GD + + + P
Sbjct: 67 AQGARRVLAIEKDARCLPALAEIAAAYPGRLEVVNGDALEIDPLSALT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR+ NLP+NV T L+++W+
Sbjct: 116 PIRVAANLPYNVGTELLVRWL 136
>gi|395786024|ref|ZP_10465752.1| ribosomal RNA small subunit methyltransferase A [Bartonella tamiae
Th239]
gi|423717082|ref|ZP_17691272.1| ribosomal RNA small subunit methyltransferase A [Bartonella tamiae
Th307]
gi|395424482|gb|EJF90669.1| ribosomal RNA small subunit methyltransferase A [Bartonella tamiae
Th239]
gi|395427871|gb|EJF93954.1| ribosomal RNA small subunit methyltransferase A [Bartonella tamiae
Th307]
Length = 274
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 94/184 (51%), Gaps = 11/184 (5%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
+ + +P +R +I Y L+ K L QNFLF+ LT KI R AG + V E+GPGPG +
Sbjct: 1 MTIDTLPPLRQVIDDYALQPKKSLGQNFLFDLNLTSKIARQAGDLKNKHVLEIGPGPGGL 60
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TR++L + A + IE+D R L+ +A P ++ GD + + ++ FS D++
Sbjct: 61 TRALLA-QGAIVTAIERDERCLNALNDIAALYPSRLNIIHGDALDISYRDFFSGDQKP-- 117
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY- 184
RII NLP+N+ T L++ W+ + + ER KP + Y
Sbjct: 118 -------RIIANLPYNIGTQLLLHWLLCDEWTPFYCSMTLMFQKEVAERIIAKPKTKHYG 170
Query: 185 QLSV 188
+LSV
Sbjct: 171 RLSV 174
>gi|114768929|ref|ZP_01446555.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2255]
gi|114549846|gb|EAU52727.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2255]
Length = 280
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 81/141 (57%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R+II Y+L A K L QNFL + LT+KI R AG +T + V E+GPGPG +TR++L
Sbjct: 9 LPPLREIINEYQLSAKKSLGQNFLLDLNLTNKIARMAGDLTNHTVLEIGPGPGGLTRALL 68
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
N +++ IE+D R P L+ + + + D ++ ++ +
Sbjct: 69 NSGAKKVLAIERDERLIPALNQIKEHFDNRLEVKYTDALNENIEAYLNGP---------- 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++++ NLP+N+ T L+++W+
Sbjct: 119 -VKVVANLPYNIGTELLVRWL 138
>gi|398819841|ref|ZP_10578387.1| dimethyladenosine transferase [Bradyrhizobium sp. YR681]
gi|398229495|gb|EJN15571.1| dimethyladenosine transferase [Bradyrhizobium sp. YR681]
Length = 285
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT +I R A + + + E+GPGPG +TR++L
Sbjct: 7 LPPLREVIRRHDLSARKSLGQNFLLDLNLTARIARAAAPLEDSTIVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE D R P L ++ P + GD M+F + + + +R
Sbjct: 67 ALGAKRVIAIEHDERAIPALQDISARYPGRLEIVHGDAMTFDPRPLLNGER--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+I+ NLP+N++TPL+I W+
Sbjct: 118 -AKIVANLPYNIATPLLIGWL 137
>gi|372281087|ref|ZP_09517123.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Oceanicola sp. S124]
Length = 280
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFL + LT KI R AG ++G +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIATHGLAAKKSLGQNFLLDLNLTAKIARQAGDLSGCDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ IEKD R P L +A P + GD + + P
Sbjct: 67 SEGARKVLAIEKDARCLPALAEVAAHYPGRLQVIEGDALQIDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR+ NLP+NV T L+++W+
Sbjct: 116 PIRVAANLPYNVGTELLVRWL 136
>gi|85710400|ref|ZP_01041464.1| dimethyladenosine transferase [Erythrobacter sp. NAP1]
gi|85687578|gb|EAQ27583.1| dimethyladenosine transferase [Erythrobacter sp. NAP1]
Length = 275
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 18/170 (10%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITR 67
+P +P IR+ I + L A K L QNFL + +L D+I G ++G V EVGPGPG +TR
Sbjct: 1 MPDLPPIRETIAKHGLSASKALGQNFLLDEQLLDRIAALPGDLSGARVLEVGPGPGGLTR 60
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
++L R AR+ IE D R P L+ L++A P + GD M + +
Sbjct: 61 ALL-RAGARVTAIEMDRRCLPALEELSEAFPGQLTVIEGDAMKLDHGAIM---------D 110
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWI-------QAISENLLFPKHKRQLVVS 170
G P ++ NLP+NV T L +KW+ Q +S L+F + + +V+
Sbjct: 111 GEP-FHVLSNLPYNVGTALFVKWLSGQDWPPQWLSLTLMFQREVAERIVA 159
>gi|357974869|ref|ZP_09138840.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sphingomonas sp. KC8]
Length = 278
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 21/177 (11%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
M+ A+R +P +R++I + L A K L QNFLF+ +L D+I R G++ G V EVGP
Sbjct: 1 MSIDAIR--ALPPLREVIARHGLSASKALGQNFLFDGQLLDRIARVPGSLDGERVYEVGP 58
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120
GPG +TR++L A +V +E+D R P L L++AS + GD +
Sbjct: 59 GPGGLTRALLA-TGANVVAVERDSRCLPALAELSEASGGRLRVIAGDALEVD-------- 109
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
+ +E G I+ NLP+NV T L ++W+ + S L+F K + +V+
Sbjct: 110 ---EAAEAGVGAHIVANLPYNVGTALFVRWLSSETWPSWWRSLTLMFQKEVAERIVA 163
>gi|399993155|ref|YP_006573395.1| dimethyladenosine transferase KsgA [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|400754730|ref|YP_006563098.1| dimethyladenosine transferase KsgA [Phaeobacter gallaeciensis 2.10]
gi|398653883|gb|AFO87853.1| dimethyladenosine transferase KsgA [Phaeobacter gallaeciensis 2.10]
gi|398657710|gb|AFO91676.1| dimethyladenosine transferase KsgA [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
Length = 281
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ ++L A K L QNFL + LT KI R AG ++ +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIETHQLLARKSLGQNFLLDLNLTAKIARQAGDLSECDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ +EKD R P L ++ A P + GD + + P
Sbjct: 67 AEGARRVLAVEKDSRCIPALAEISDAYPGRLQVIEGDALEVNPLTHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IRI NLP+NV T L+++W+
Sbjct: 116 PIRIAANLPYNVGTELLVRWL 136
>gi|424914730|ref|ZP_18338094.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
WSM597]
gi|392850906|gb|EJB03427.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
WSM597]
Length = 275
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + + EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHSLDARKALGQNFLLDLNLTQKIARTAGALEEATIFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ +E+D R P L +A P + GD + + + SE
Sbjct: 67 ALGARKVIAVERDTRCLPALAEIADHYPGRLEVIEGDALKTDFEALASEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I+II NLP+NV T L++ W+
Sbjct: 118 -IKIIANLPYNVGTQLLVNWL 137
>gi|294012542|ref|YP_003546002.1| dimethyladenosine transferase [Sphingobium japonicum UT26S]
gi|292675872|dbj|BAI97390.1| dimethyladenosine transferase [Sphingobium japonicum UT26S]
Length = 280
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 78/143 (54%), Gaps = 12/143 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L+A K L QNFL + +L D+I G + G EVGPGPG +TR+IL
Sbjct: 9 LPPLREVIAAHGLQASKALGQNFLLDEQLLDRIAAIPGPLEGQPAFEVGPGPGGLTRAIL 68
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R A+LV +E+D R P L L A P + GD M D R + E
Sbjct: 69 -RAGAKLVAVERDRRCLPALAELDAAFPGQLRVLSGDAMEV--------DARAEAGE--- 116
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
G II NLP+NV T L+I W+ A
Sbjct: 117 GAHIIANLPYNVGTALLIGWLSA 139
>gi|85716334|ref|ZP_01047307.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A]
gi|85696850|gb|EAQ34735.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A]
Length = 284
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 10/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+IK + L A K L QNFL + LT KI R AG + G V E+GPGPG +TR++L
Sbjct: 7 LPPLRDVIKRHALSARKSLGQNFLLDLNLTAKIARAAGQLQGATVIEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ IE+D R L+ ++ P + GD +F Q + R
Sbjct: 67 AAGAKHVIAIERDERALGPLEEISDRYPDRLTIVNGDATNFDPQPLLGTTR--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
+I+ NLP+N++T L+I+W+
Sbjct: 118 -AKIVANLPYNIATALLIRWLS 138
>gi|357384083|ref|YP_004898807.1| dimethyladenosine transferase [Pelagibacterium halotolerans B2]
gi|351592720|gb|AEQ51057.1| dimethyladenosine transferase [Pelagibacterium halotolerans B2]
Length = 281
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 81/142 (57%), Gaps = 11/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + LRA K+L QNFL + LT +I R+AG +T V EVGPGPG +TR++L
Sbjct: 7 LPPLREVIAEHGLRAKKELGQNFLLDLNLTARIARSAGDLTDVTVIEVGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R P L ++QA + D + + + +E R
Sbjct: 67 AAGAKKVIAIERDERALPALAQISQAYRGRLEVISADALEIDYR-VLAEGR--------- 116
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
+I+ NLP+N++TPL+ W+
Sbjct: 117 -TKIVANLPYNIATPLLTGWLS 137
>gi|218673561|ref|ZP_03523230.1| dimethyladenosine transferase [Rhizobium etli GR56]
Length = 275
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEETTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R P L +A P + GD + +++ E
Sbjct: 67 ALGARKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFESLAPEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ W+
Sbjct: 118 -VKIIANLPYNVGTQLLVNWL 137
>gi|296447968|ref|ZP_06889875.1| dimethyladenosine transferase [Methylosinus trichosporium OB3b]
gi|296254535|gb|EFH01655.1| dimethyladenosine transferase [Methylosinus trichosporium OB3b]
Length = 287
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R+++ + L A K L QNFLF+ LT +I R AG + G + E+GPGPG +TR++L
Sbjct: 5 LPPLREVVAKHGLMASKALGQNFLFDLNLTARIARAAGPLEGATIVEIGPGPGGLTRALL 64
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ +E+D R P L + P + GD ++ + E GL
Sbjct: 65 AEGAGRVIAVERDARCMPALREIEARYPGRLVIVEGDALAADPAQLVRE-------HGLG 117
Query: 131 G-IRIIGNLPFNVSTPLIIKWIQA 153
G RI NLP+N++T L+ +WI+A
Sbjct: 118 GPARICANLPYNIATELLARWIEA 141
>gi|114704784|ref|ZP_01437692.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
[Fulvimarina pelagi HTCC2506]
gi|114539569|gb|EAU42689.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
[Fulvimarina pelagi HTCC2506]
Length = 277
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 17/168 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R +I + L KQL QNFL + LT KI R A + V EVGPGPG +TR++L
Sbjct: 7 LPPLRTVIAEHDLVPRKQLGQNFLLDLNLTSKIARQAAPLEDCIVVEVGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+R+V EKDPR P L+ +A+ P + D + ++++ +EDR
Sbjct: 67 ANGASRVVAAEKDPRCVPVLEDIAKRYPGRLEVRQMDALDLDVESI-AEDR--------- 116
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVSL 171
++I+ NLP+NV T L++ W+ S L+F K + +V+L
Sbjct: 117 TLKIVANLPYNVGTQLLVNWLSVEAWPPRWQSLTLMFQKEVAERIVAL 164
>gi|85374607|ref|YP_458669.1| dimethyladenosine transferase [Erythrobacter litoralis HTCC2594]
gi|122544064|sp|Q2N8W9.1|RSMA_ERYLH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|84787690|gb|ABC63872.1| dimethyladenosine transferase [Erythrobacter litoralis HTCC2594]
Length = 281
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITR 67
+P +P +RD+I + L A K L QNFLF+ +L D+I G + V E+GPGPG +TR
Sbjct: 1 MPELPPLRDVIAKHGLSASKALGQNFLFDAQLLDRIAGIPGGLENRAVLEIGPGPGGLTR 60
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
++L + AR+ IE D R P L L++ P + GD M + E
Sbjct: 61 ALL-KAGARVTAIEMDRRCLPALAELSEVYPGKLSVIHGDAMKLDHAELMGEP------- 112
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWI-------QAISENLLFPKHKRQLVVS 170
++ NLP+NV T L ++W+ Q S L+F + Q +VS
Sbjct: 113 ----FAVVANLPYNVGTALFVRWLGGETWPPQWTSLTLMFQQEVAQRIVS 158
>gi|381199130|ref|ZP_09906282.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sphingobium yanoikuyae XLDN2-5]
Length = 284
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 77/146 (52%), Gaps = 12/146 (8%)
Query: 9 PPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRS 68
P +P +RD+I + L+A K L QNFL + +L D+I G+I EVGPGPG +TR+
Sbjct: 7 PTLPPLRDVIAAHGLQASKALGQNFLLDEQLLDRIAAIPGSIQDQPAFEVGPGPGGLTRA 66
Query: 69 ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128
IL R +L+ +E+D R P L L A P + GD M +E
Sbjct: 67 IL-RAGGKLIAVERDRRCLPALAELELAFPGQLRVISGDAMEIDAH-----------AEA 114
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQAI 154
G II NLP+NV T L++ W+ A+
Sbjct: 115 GDGAHIIANLPYNVGTALLVGWLSAL 140
>gi|384917614|ref|ZP_10017734.1| dimethyladenosine transferase [Citreicella sp. 357]
gi|384468542|gb|EIE52967.1| dimethyladenosine transferase [Citreicella sp. 357]
Length = 278
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I ++L A K L QNFL + LT KI R AG ++G +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIATHELSAKKSLGQNFLLDLNLTAKIARQAGDLSGMDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R P L +A P + GD + + P
Sbjct: 67 AEGARRVLAIEKDARCLPALAEIAAVYPGRLEVIEGDALQIDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I I NLP+NV T L+++W+
Sbjct: 116 PIAICANLPYNVGTELLVRWL 136
>gi|294084204|ref|YP_003550962.1| dimethyladenosine transferase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663777|gb|ADE38878.1| dimethyladenosine transferase [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 295
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 12/146 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PS+RD++ +RA K L QNFLF+ LT +I R+A +TG + E+GPGPG +TR++L
Sbjct: 25 LPSLRDLVGAMDMRARKSLGQNFLFDLNLTRRIARSAAPLTGTTI-EIGPGPGGLTRALL 83
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IEKD R L L AS + D M F + ++ R
Sbjct: 84 LEGATKVLAIEKDWRAPDVLASLLSASRGRLELTEADAMDFPIWDIEPAPR--------- 134
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISE 156
RII NLP+N++T L+I+W++ ++
Sbjct: 135 --RIIANLPYNIATTLLIRWLEHAAD 158
>gi|433776031|ref|YP_007306498.1| dimethyladenosine transferase [Mesorhizobium australicum WSM2073]
gi|433668046|gb|AGB47122.1| dimethyladenosine transferase [Mesorhizobium australicum WSM2073]
Length = 279
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 20/171 (11%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L+A K L QNFL + LT KI R+AG +T V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHGLQAKKALGQNFLLDLNLTGKIARSAGDLTNATVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
+ R+V IE+D R CL LA+ S P + GD + + +E +
Sbjct: 66 SNGARRVVAIERDER---CLAALAEVSAHYPGRLEVISGDALKTDFAALAAE------AA 116
Query: 128 GLPG-IRIIGNLPFNVSTPLIIKWIQAI-------SENLLFPKHKRQLVVS 170
G G +RI+ NLP+N+ T L+++W+ S L+F + Q +V+
Sbjct: 117 GDSGQVRIVANLPYNIGTELLVRWLTVTDWPPFYASMTLMFQREVAQRIVA 167
>gi|390166589|ref|ZP_10218848.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sphingobium indicum B90A]
gi|389590493|gb|EIM68482.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sphingobium indicum B90A]
Length = 280
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 82/153 (53%), Gaps = 14/153 (9%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
MAA R +P +R++I + L+A K L QNFL + +L D+I G + G EVGP
Sbjct: 1 MAADTRR--ALPPLREVIAAHGLQASKALGQNFLLDEQLLDRIAAIPGPLEGQPAFEVGP 58
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120
GPG +TR+IL R A+LV +E+D R P L L A P + GD M D
Sbjct: 59 GPGGLTRAIL-RGGAKLVAVERDRRCLPALAELDAAFPGQLRVLSGDAMEV--------D 109
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153
R + E G +I NLP+NV T L+I W+ A
Sbjct: 110 ARAEAGE---GAHVIANLPYNVGTALLIGWLSA 139
>gi|407798055|ref|ZP_11144968.1| dimethyladenosine transferase [Oceaniovalibus guishaninsula
JLT2003]
gi|407059892|gb|EKE45815.1| dimethyladenosine transferase [Oceaniovalibus guishaninsula
JLT2003]
Length = 279
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R +I + L A K + QNFL + LT KI R AG ++ +V E+GPGPG +TR +L
Sbjct: 7 LPPLRTVIADHGLVAKKSMGQNFLLDLNLTAKIARQAGDLSACDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+V +EKD R P L +A A P + GD +S P
Sbjct: 67 AEGARHVVAVEKDARCLPALAQIADAYPGRLTVLHGDALSVDPAAHLE-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+RI+ NLP+NV T L+++W+
Sbjct: 116 PVRIVSNLPYNVGTELLVRWL 136
>gi|254504321|ref|ZP_05116472.1| dimethyladenosine transferase [Labrenzia alexandrii DFL-11]
gi|222440392|gb|EEE47071.1| dimethyladenosine transferase [Labrenzia alexandrii DFL-11]
Length = 283
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I + L A K L QNFL + LT +I R+AG++ + + E+GPGPG +TR++L
Sbjct: 7 LPPLRDVIAAHGLNAKKSLGQNFLLDLNLTSRIARSAGSLEDHTILEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++V IEKD R P L +A P + GD + + +
Sbjct: 67 AAGAKKVVAIEKDSRCLPALAEIAYHYPGRLEVIEGDALEIDPVAITGGGK--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+RI NLP+NV T L+I WI
Sbjct: 118 -VRIAANLPYNVGTQLLINWI 137
>gi|110680311|ref|YP_683318.1| dimethyladenosine transferase [Roseobacter denitrificans OCh 114]
gi|118600895|sp|Q164G1.1|RSMA_ROSDO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|109456427|gb|ABG32632.1| dimethyladenosine transferase, putative [Roseobacter denitrificans
OCh 114]
Length = 280
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R +I+ + L A K + QNFL + LT KI R AG ++ +V E+GPGPG +TR +L
Sbjct: 7 LPPLRSVIRDHDLSARKSMGQNFLLDLNLTAKIARQAGDLSACDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ R++ IEKD R P L +A P + GD + + + P
Sbjct: 67 AQGARRVLAIEKDARCLPALAEIAAVYPGRLEVMNGDALEIDPLSALT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR+ NLP+NV T L+++W+
Sbjct: 116 PIRVAANLPYNVGTELLVRWL 136
>gi|218509347|ref|ZP_03507225.1| dimethyladenosine transferase [Rhizobium etli Brasil 5]
Length = 215
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT K+ R AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ +E+D R P L + P + GD + +++ E
Sbjct: 67 ALGAKKVIAVERDARCLPALAEIGDHYPGRLEVIEGDALKTDFESLAPEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ W+
Sbjct: 118 -VKIIANLPYNVGTQLLVNWL 137
>gi|430003076|emb|CCF18859.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Rhizobium sp.]
Length = 275
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT KI R+AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLREVIQRHGLDAKKALGQNFLLDLNLTQKIARSAGPLEDATVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +L+ IE+D R P L +A+ P + GD + + ++
Sbjct: 67 SLGARKLIAIERDSRCLPALAEIAEHYPGRLEVIEGDALKVDFDALAADGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I+II NLP+NV T L++ W+
Sbjct: 118 -IKIIANLPYNVGTQLLLNWL 137
>gi|452963372|gb|EME68444.1| dimethyladenosine transferase [Magnetospirillum sp. SO-1]
Length = 286
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 80/142 (56%), Gaps = 11/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L Q+FLF+ LT +I R AG ++ V E+GPGPG +TR++L
Sbjct: 4 LPPLREVIARHGLDARKSLGQHFLFDLNLTGRIARAAGDLSVGSVIEIGPGPGGLTRALL 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ R++ IE+D R + +A+A P + D M+ ++ R
Sbjct: 64 DAGARRVIAIERDDRAIAIQNEIAEAYPGRLEIMAADAMTVDAADLGETPR--------- 114
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
RI+ NLP+N+ST L++ W++
Sbjct: 115 --RIVANLPYNISTALLLGWLR 134
>gi|91977439|ref|YP_570098.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5]
gi|123735336|sp|Q135P2.1|RSMA_RHOPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|91683895|gb|ABE40197.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB5]
Length = 287
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLRDVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE+D R L+ +A P + D M F + +R
Sbjct: 67 ATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMDFDPTPLLGGER--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+I+ NLP+N++TPL+I W+
Sbjct: 118 -AKIVANLPYNIATPLLIGWL 137
>gi|451941769|ref|YP_007462406.1| dimethyladenosine transferase [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451901156|gb|AGF75618.1| dimethyladenosine transferase [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 276
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 78/143 (54%), Gaps = 9/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I +Y L+A K L QNFLF LT KI AG I G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIDIYGLQAHKSLGQNFLFNLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + + P ++ D + +F + +
Sbjct: 66 AKG-AIVTAIERDERCIPALLEIEKHYPQKLNLICNDALKQDFSKLFEKSLEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RII NLP+N+ T L++ W+ A
Sbjct: 119 --RIIANLPYNIGTQLLLNWLLA 139
>gi|49474096|ref|YP_032138.1| dimethyladenosine transferase [Bartonella quintana str. Toulouse]
gi|62900523|sp|Q6G052.1|RSMA_BARQU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|49239600|emb|CAF25957.1| Dimethyladenosine transferase [Bartonella quintana str. Toulouse]
Length = 276
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I +Y L+A K L QNFLF+ LT KI AG I G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIDIYGLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A ++ IE+D R P L + + P + D + +F +
Sbjct: 66 AKG-ALVIAIERDERCIPALLAIEKHYPKKLKLICNDALKQNFSKLFETYPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RII NLP+N+ T L++ W+
Sbjct: 119 --RIIANLPYNIGTQLLLNWL 137
>gi|114766148|ref|ZP_01445152.1| dimethyladenosine transferase [Pelagibaca bermudensis HTCC2601]
gi|114541608|gb|EAU44650.1| dimethyladenosine transferase [Roseovarius sp. HTCC2601]
Length = 278
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFL + LT KI R AG ++G +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIASHDLSAKKSLGQNFLLDLNLTAKIARQAGDLSGMDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IEKD R P L +A A P + GD + + P
Sbjct: 67 AEGARKVLAIEKDTRCLPALAEIAGAYPDRLEVISGDALQIDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I I NLP+NV T L+++W+
Sbjct: 116 PIAICANLPYNVGTELLVRWL 136
>gi|395789993|ref|ZP_10469501.1| ribosomal RNA small subunit methyltransferase A [Bartonella
taylorii 8TBB]
gi|395428215|gb|EJF94297.1| ribosomal RNA small subunit methyltransferase A [Bartonella
taylorii 8TBB]
Length = 276
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 9/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I Y+L+A K L QNFLF+ LT KI AG I G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVINKYRLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + Q P + D + +F +
Sbjct: 66 AKG-AIVTAIERDERCIPALLEIEQHYPQKLKLICNDALKQDFSKLFETYPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RII NLP+N+ T L++ W+ A
Sbjct: 119 --RIIANLPYNIGTQLLLNWLLA 139
>gi|91205019|ref|YP_537374.1| dimethyladenosine transferase [Rickettsia bellii RML369-C]
gi|119365058|sp|Q1RK29.1|RSMA_RICBR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|91068563|gb|ABE04285.1| Dimethyladenosine transferase [Rickettsia bellii RML369-C]
Length = 268
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 16/179 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI +++ LK+ QNF+F+ L DKIVR +G + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAASHQIHPLKKHGQNFIFDGSLCDKIVRASGLEENSNVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ P L +IE D R P L+ + Q P ++ D + + ++ +
Sbjct: 62 HKNPKLLTVIETDERCIPLLNEIKQYHP-NLNIIKQDALKLKLSDLNTNK---------- 110
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
I II NLP+++ T L+I+W++ E+ L L ++ER C KP + Y +LSV
Sbjct: 111 -ITIISNLPYHIGTELVIRWLK---ESSLVASMTLMLQKEVVERICAKPSTKAYGRLSV 165
>gi|150395984|ref|YP_001326451.1| dimethyladenosine transferase [Sinorhizobium medicae WSM419]
gi|166221706|sp|A6U7I6.1|RSMA_SINMW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|150027499|gb|ABR59616.1| dimethyladenosine transferase [Sinorhizobium medicae WSM419]
Length = 274
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEGVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++V IE+D R P L + P + GD + + +
Sbjct: 67 ALGAKKVVAIERDSRCLPALAEIGAHYPERLDVVEGDALKVDFEALADGP---------- 116
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+RII NLP+NV T L++ W+
Sbjct: 117 -VRIIANLPYNVGTQLLVNWL 136
>gi|395764725|ref|ZP_10445349.1| ribosomal RNA small subunit methyltransferase A [Bartonella sp.
DB5-6]
gi|395414262|gb|EJF80711.1| ribosomal RNA small subunit methyltransferase A [Bartonella sp.
DB5-6]
Length = 276
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I Y+L+A K L QNFLF+ LT KI AG I G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVINKYRLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + Q P + D + +F+ +
Sbjct: 66 AKG-AIVTAIERDERCIPALLEIEQHYPQKLKLICNDALKQDFSKLFATYPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RII NLP+N+ T L++ W+
Sbjct: 119 --RIIANLPYNIGTQLLLNWL 137
>gi|254509515|ref|ZP_05121582.1| dimethyladenosine transferase [Rhodobacteraceae bacterium KLH11]
gi|221533226|gb|EEE36214.1| dimethyladenosine transferase [Rhodobacteraceae bacterium KLH11]
Length = 280
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I ++L A K L QNFL + LT KI R AG +T +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTECDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ ++V +EKD R L+ +A A P + GD + + P
Sbjct: 67 SEGARKVVALEKDTRCIAALNDIAAAYPGRLEVINGDALEIDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR+ NLP+NV T L+++W+
Sbjct: 116 PIRVAANLPYNVGTELLVRWL 136
>gi|157827650|ref|YP_001496714.1| dimethyladenosine transferase [Rickettsia bellii OSU 85-389]
gi|166221696|sp|A8GXS7.1|RSMA_RICB8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|157802954|gb|ABV79677.1| dimethyladenosine transferase [Rickettsia bellii OSU 85-389]
Length = 268
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 16/179 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI +++ LK+ QNF+F+ L DKIVR +G + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAASHQIHPLKKHGQNFIFDGSLCDKIVRASGLEENSNVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ P L +IE D R P L+ + Q P ++ D + + ++ +
Sbjct: 62 HKNPKLLTVIETDERCIPLLNEIKQYHP-NLNIIKQDALKLKLSDLNTNK---------- 110
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
I II NLP+++ T L+I+W++ E+ L L ++ER C KP + Y +LSV
Sbjct: 111 -ITIISNLPYHIGTELVIRWLK---ESSLVASMTLMLQKEVVERICAKPSTKAYGRLSV 165
>gi|383643069|ref|ZP_09955475.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sphingomonas elodea ATCC 31461]
Length = 274
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I Y L A K L QNFLF+ +L +I + G + G EV EVGPGPG +TR++L
Sbjct: 4 LPPLRDVIAKYGLSASKALGQNFLFDGQLLGRIAKVPGDLAGAEVFEVGPGPGGLTRALL 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
A++ +E+D R P L+ L P + GD + +F+
Sbjct: 64 QAG-AKVTAVERDRRCIPALEELGTYFPDQLRVIEGDALEVDAPALFAAKP--------- 113
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA------ISENLLFPKHKRQLVVS 170
++ NLP+NV T L+I W+ A S L+F K + +V+
Sbjct: 114 --HVVANLPYNVGTALLIGWLSAEWQPWWASLTLMFQKEVAERIVA 157
>gi|347527873|ref|YP_004834620.1| ribosomal RNA small subunit methyltransferase A [Sphingobium sp.
SYK-6]
gi|345136554|dbj|BAK66163.1| ribosomal RNA small subunit methyltransferase A [Sphingobium sp.
SYK-6]
Length = 276
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 21/170 (12%)
Query: 9 PPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRS 68
P +P +R++I + LRA K L QNFL + +L D+I G++ G V EVGPGPG +TR+
Sbjct: 3 PVLPPLREVIASHGLRASKALGQNFLLDEQLLDRIAAVPGSLAGERVFEVGPGPGGLTRA 62
Query: 69 ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128
+L R A++ +E+D R P L+ LA A P + GD + R D E
Sbjct: 63 LL-RAGAQVTAVERDARCLPALEELAAAFPGKLRVIEGDAL------------RVDPLEA 109
Query: 129 LPG-IRIIGNLPFNVSTPLIIKWIQAI-------SENLLFPKHKRQLVVS 170
G I+ NLP+NV T L++ W+++ S L+F + +V+
Sbjct: 110 CGGPAHIVANLPYNVGTALLVGWLESAVWPPWWKSATLMFQAEVAERIVA 159
>gi|297717804|gb|ADI50045.1| dimethyladenosine transferase [Candidatus Odyssella
thessalonicensis L13]
Length = 281
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 18/163 (11%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
LRL + +++ ++ Y L A K L QNFLF + KI R+AG + V E+GPGPG +
Sbjct: 1 LRLDHLATVKATVEQYGLMAKKSLGQNFLFNMEIVRKIARSAGCLKEVTVLEIGPGPGGL 60
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TR++L +V IE DPR L L A+ + D ++ + Q++
Sbjct: 61 TRALLEAGAQEVVAIEHDPRCIIALKELVDAAEGKLQIIQADALTISPQDL--------- 111
Query: 126 SEGLPG--IRIIGNLPFNVSTPLIIKWIQA----ISENLLFPK 162
LP I+I+ NLP+NV T L+I+W+ +S L+F K
Sbjct: 112 ---LPSRPIKIVANLPYNVGTQLLIRWLHCLDNIVSMTLMFQK 151
>gi|86357087|ref|YP_468979.1| dimethyladenosine transferase [Rhizobium etli CFN 42]
gi|119365052|sp|Q2KA84.1|RSMA_RHIEC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|86281189|gb|ABC90252.1| dimethyladenosine transferase (16S rRNA dimethylase) protein
[Rhizobium etli CFN 42]
Length = 275
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT K+ R AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGALEETTVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ +E+D R P L +A P + GD + + + E
Sbjct: 67 ALGAKKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKTDFEALAPEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ W+
Sbjct: 118 -VKIIANLPYNVGTQLLVNWL 137
>gi|163868023|ref|YP_001609227.1| dimethyladenosine transferase [Bartonella tribocorum CIP 105476]
gi|189028801|sp|A9IRW8.1|RSMA_BART1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|161017674|emb|CAK01232.1| dimethyladenosine transferase [Bartonella tribocorum CIP 105476]
Length = 276
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I Y L+A K L QNFLF+ LT KI AGTI G V E+GPGPG +TR++L
Sbjct: 6 LPPLREVIDTYGLQAHKSLGQNFLFDLNLTSKIAHQAGTIEGKPVLEIGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + + P + D + +F +
Sbjct: 66 AKG-AIVTAIERDERCIPALLEIEKHYPNQLKLICNDALKQDFSKLFGSSPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RII NLP+N+ T L++ W+
Sbjct: 119 --RIIANLPYNIGTQLLLNWL 137
>gi|395781965|ref|ZP_10462375.1| ribosomal RNA small subunit methyltransferase A [Bartonella
rattimassiliensis 15908]
gi|395420407|gb|EJF86688.1| ribosomal RNA small subunit methyltransferase A [Bartonella
rattimassiliensis 15908]
Length = 276
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 9/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I +Y L+A K L QNFLF+ LT KI AG I G V E+GPGPG++TR++L
Sbjct: 6 LPPLREVIDIYGLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEIGPGPGALTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + + P + D + +F +
Sbjct: 66 AKG-AIVTAIERDERCIPALLEIEKHYPQKLKLICNDALKQDFSKLFKTSPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RII NLP+N+ T L++ W+ A
Sbjct: 119 --RIIANLPYNIGTQLLLNWLLA 139
>gi|118588149|ref|ZP_01545559.1| dimethyladenosine transferase [Stappia aggregata IAM 12614]
gi|118439771|gb|EAV46402.1| dimethyladenosine transferase [Stappia aggregata IAM 12614]
Length = 274
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 74/138 (53%), Gaps = 10/138 (7%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+RD+I + L A K L QNFL + LT +I R+AG++ V EVGPGPG +TR++L
Sbjct: 1 MRDVIAEHGLNAKKSLGQNFLLDLNLTSRIARSAGSLEDCTVLEVGPGPGGLTRALLAAG 60
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
R++ IEKD R P L ++ P + GD + + D+ +R
Sbjct: 61 AKRVIAIEKDSRCLPALAEISAHYPGRLEVIEGDALEIDPVALTGGDK----------VR 110
Query: 134 IIGNLPFNVSTPLIIKWI 151
I NLP+NV T L+I WI
Sbjct: 111 IAANLPYNVGTQLLINWI 128
>gi|296116660|ref|ZP_06835270.1| dimethyladenosine transferase [Gluconacetobacter hansenii ATCC
23769]
gi|295976872|gb|EFG83640.1| dimethyladenosine transferase [Gluconacetobacter hansenii ATCC
23769]
Length = 285
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 91/175 (52%), Gaps = 24/175 (13%)
Query: 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSI 69
P S+RD+I + L A K L Q+FL +P +T +I AG + V EVGPGPG +TR++
Sbjct: 11 PHESLRDVIARHGLDARKSLGQHFLLDPGITARIASMAGRLDDVNVVEVGPGPGGLTRAL 70
Query: 70 LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129
L+ + ++E D R ++ LA + P +H D M RRD +
Sbjct: 71 LDTPATSVSVVEVDARAIVIMNELAASHPGRLHVVEDDAM------------RRDLATLC 118
Query: 130 PGIR-IIGNLPFNVSTPLIIKWIQAISE----NLLFPKHKRQLVVSLLERACVKP 179
P R I+ NLP+NV TPL++ W++ +E L+F QL V+ ER C P
Sbjct: 119 PAPRQIVANLPYNVGTPLLVGWLRQATEWARLTLMF-----QLEVA--ERICAPP 166
>gi|424894420|ref|ZP_18317994.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
WSM2297]
gi|393178647|gb|EJC78686.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
WSM2297]
Length = 275
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + + EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEDATIFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ +E+D R P L +A P + GD + + + E
Sbjct: 67 ALGAKKVIAVERDTRCLPALAEIADHYPGRLEVIEGDALKTDFEALAPEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I+II NLP+NV T L++ W+
Sbjct: 118 -IKIIANLPYNVGTQLLVNWL 137
>gi|103486963|ref|YP_616524.1| dimethyladenosine transferase [Sphingopyxis alaskensis RB2256]
gi|118600899|sp|Q1GT31.1|RSMA_SPHAL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|98977040|gb|ABF53191.1| dimethyladenosine transferase [Sphingopyxis alaskensis RB2256]
Length = 271
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 11/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
MP +R+ ++++ L A K L QNFLF+ +L D+I G + G V EVGPGPG +TR++L
Sbjct: 1 MPPLRETVRVHGLSASKALGQNFLFDEQLLDRIAAIPGDLDGATVFEVGPGPGGLTRALL 60
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R AR++ +E+D R P L LA+A P + D M+ + + D
Sbjct: 61 -RTGARVIAVERDERCLPLLADLAEAFPGQLTVIADDAMAVDVDALTGGDP--------- 110
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
I+ NLP+NV T L +W++
Sbjct: 111 -YHIVANLPYNVGTALFTRWLE 131
>gi|393724874|ref|ZP_10344801.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sphingomonas sp. PAMC 26605]
Length = 273
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 12/148 (8%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
+ LP +P +R++I + L A K L QNFL + +L +I R G +T EV E+GPGPG +
Sbjct: 1 MTLPDLPPLREVIARHGLNASKALGQNFLLDAQLLARIARIPGDLTDAEVLEIGPGPGGL 60
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TR++L AR+ IE+D R P L L +A P + GD + +F
Sbjct: 61 TRALLG-AGARVTAIERDRRCIPALAELGEAFPGKLRVIEGDALEIDGAALF-------- 111
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQA 153
E P I NLP+N+ T L+++W+ A
Sbjct: 112 -ESKP--HIASNLPYNIGTALLVRWLSA 136
>gi|116251330|ref|YP_767168.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. viciae
3841]
gi|118600891|sp|Q1MJ01.1|RSMA_RHIL3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|115255978|emb|CAK07059.1| putative dimethyladenosine transferase [Rhizobium leguminosarum bv.
viciae 3841]
Length = 275
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEDATVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R P L +A P + GD + + + +
Sbjct: 67 ALGARKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFETLAPQGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I+II NLP+NV T L++ W+
Sbjct: 118 -IKIIANLPYNVGTQLLVNWL 137
>gi|73667017|ref|YP_303033.1| dimethyladenosine transferase [Ehrlichia canis str. Jake]
gi|119365025|sp|Q3YS70.1|RSMA_EHRCJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|72394158|gb|AAZ68435.1| dimethyladenosine transferase [Ehrlichia canis str. Jake]
Length = 262
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 15/148 (10%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K+LSQ F+ +TDKIV AG I+ + E+GPG G++T SILN+ P RL+ IEKD R
Sbjct: 11 KELSQCFISSSHITDKIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKRLISIEKDSRL 70
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P + F L D ++ ++ + P ++II NLP++++TPL
Sbjct: 71 MPIHKKIVDEFNGKYEFILSDALNIDLRTIIE-----------PPVKIIANLPYHIATPL 119
Query: 147 IIKWIQAI----SENLLFPKHKRQLVVS 170
++KWI I S L+F K +V+
Sbjct: 120 LMKWINYIDFFTSFTLMFQKEVADRIVA 147
>gi|217978375|ref|YP_002362522.1| dimethyladenosine transferase [Methylocella silvestris BL2]
gi|217503751|gb|ACK51160.1| dimethyladenosine transferase [Methylocella silvestris BL2]
Length = 288
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 77/143 (53%), Gaps = 9/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R+I+ + L A K L QNFLF+ LT +I R AG + EVGPGPG +TR++L
Sbjct: 8 LPPLREIVAAFGLDAKKSLGQNFLFDLNLTGRIARAAGPQDAALILEVGPGPGGLTRALL 67
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R P L +A P + GD + + + + R
Sbjct: 68 TEGARKVIAIERDERCLPALRQIADHYPGRLEIIAGDALGADVAALAGDAR--------- 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RI NLP+NV+T L+ +WI++
Sbjct: 119 PARICANLPYNVATALLTRWIES 141
>gi|421587230|ref|ZP_16032657.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rhizobium sp. Pop5]
gi|403708323|gb|EJZ23064.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rhizobium sp. Pop5]
Length = 275
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + + EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGPLEDATIFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R P L +A P + GD + + + E
Sbjct: 67 ALGAKKVIAIERDSRCLPALAEIADHYPGRLEVIEGDALKADFETLAPEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ W+
Sbjct: 118 -VKIIANLPYNVGTQLLVNWL 137
>gi|420244631|ref|ZP_14748383.1| dimethyladenosine transferase [Rhizobium sp. CF080]
gi|398052805|gb|EJL45044.1| dimethyladenosine transferase [Rhizobium sp. CF080]
Length = 277
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R+AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKSLGQNFLLDLNLTQKIARSAGPLGDATVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ +E+D R P L + + P + GD + + E
Sbjct: 67 SLGAKKVIAVERDSRCLPALAEIGEHYPGRLEVIEGDALKTDFAALAPEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L+I W+
Sbjct: 118 -VKIIANLPYNVGTQLLINWL 137
>gi|404253366|ref|ZP_10957334.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sphingomonas sp. PAMC 26621]
Length = 280
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 9 PPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRS 68
P +P +RD+I + L A K L QNFL + +L +I R G +T EV E+GPGPG +TR+
Sbjct: 11 PELPPLRDVIARHGLAASKALGQNFLLDAQLLARIARIPGDLTDAEVLEIGPGPGGLTRA 70
Query: 69 ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128
+L AR+ IE+D R P L L +A P + GD + +F+ G
Sbjct: 71 LLAAG-ARVTAIERDHRCIPALAELGEAYPGKLTVIEGDALEIDAVPLFA---------G 120
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQA 153
P I NLP+N+ T L+++W+ A
Sbjct: 121 KP--HIASNLPYNIGTALLVRWLSA 143
>gi|395493042|ref|ZP_10424621.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sphingomonas sp. PAMC 26617]
Length = 280
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 9 PPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRS 68
P +P +RD+I + L A K L QNFL + +L +I R G +T EV E+GPGPG +TR+
Sbjct: 11 PELPPLRDVIARHGLAASKALGQNFLLDAQLLARIARIPGDLTDAEVLEIGPGPGGLTRA 70
Query: 69 ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128
+L AR+ IE+D R P L L +A P + GD + +F+ G
Sbjct: 71 LLAAG-ARVTAIERDHRCIPALAELGEAYPGKLTVIEGDALEIDAVPLFA---------G 120
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQA 153
P I NLP+N+ T L+++W+ A
Sbjct: 121 KP--HIASNLPYNIGTALLVRWLSA 143
>gi|110634113|ref|YP_674321.1| dimethyladenosine transferase [Chelativorans sp. BNC1]
gi|118600875|sp|Q11HG9.1|RSMA_MESSB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|110285097|gb|ABG63156.1| dimethyladenosine transferase [Chelativorans sp. BNC1]
Length = 275
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT +I R AG + V EVGPGPG +TR++L
Sbjct: 6 LPPLRDVIERHGLFARKALGQNFLLDLNLTRRIARTAGGLDNATVLEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R+V IE+D R L+ +A P + GD M +
Sbjct: 66 MEGARRVVAIERDERCIAALEEIAAHYPGRLEIVAGDAMKADFAALAGNS---------G 116
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++I+ NLP+N+ T L+I+W+
Sbjct: 117 DVKIVANLPYNIGTELLIRWL 137
>gi|424874623|ref|ZP_18298285.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393170324|gb|EJC70371.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 275
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + + EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALDDATIFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R P L +A P + GD + + + +
Sbjct: 67 ALGARKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFETLAPQGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I+II NLP+NV T L++ W+
Sbjct: 118 -IKIIANLPYNVGTQLLVNWL 137
>gi|222148148|ref|YP_002549105.1| dimethyladenosine transferase [Agrobacterium vitis S4]
gi|254807854|sp|B9JUV4.1|RSMA_AGRVS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|221735136|gb|ACM36099.1| rRNA-adenine N6N6-dimethyltransferase [Agrobacterium vitis S4]
Length = 275
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 17/167 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + +T K+ R AG +T V EVGPGPG +TR++L
Sbjct: 7 LPPLRDVIQRHGLDAKKALGQNFLLDLNITQKVARTAGDLTNATVFEVGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R P L ++ P + GD + + M +
Sbjct: 67 ALGAKKVIAIERDSRCLPALAEISDHYPGRLEVIEGDALKTDFEAMAPDGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
++I+ NLP+NV T L+I W+ S L+F K Q +V+
Sbjct: 118 -VKIVANLPYNVGTQLLINWLMPRQWPPFWDSLTLMFQKEVGQRIVA 163
>gi|121602690|ref|YP_988818.1| dimethyladenosine transferase [Bartonella bacilliformis KC583]
gi|421760623|ref|ZP_16197439.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bartonella bacilliformis INS]
gi|166221646|sp|A1US65.1|RSMA_BARBK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|120614867|gb|ABM45468.1| dimethyladenosine transferase [Bartonella bacilliformis KC583]
gi|411175040|gb|EKS45067.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bartonella bacilliformis INS]
Length = 276
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 11/146 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I Y L+A K L QNFLF+ LT KI R AG I G V E+GPGPG +TR++L
Sbjct: 6 LPPLREVINAYGLQANKSLGQNFLFDLNLTSKIARQAGNIEGKPVIEIGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + +IE+D R P L + + P ++ D + + + SE P
Sbjct: 66 AKG-AIVTVIERDKRCLPALLEIEKHYPKKLNLIFDDALKQDLSKL---------SETYP 115
Query: 131 -GIRIIGNLPFNVSTPLIIKWIQAIS 155
RII NLP+N+ T L++ W+ S
Sbjct: 116 EKPRIIANLPYNIGTQLLLNWLLTTS 141
>gi|383772401|ref|YP_005451467.1| ribosomal RNA small subunit methyltransferase A [Bradyrhizobium sp.
S23321]
gi|381360525|dbj|BAL77355.1| ribosomal RNA small subunit methyltransferase A [Bradyrhizobium sp.
S23321]
Length = 285
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT +I R A + + + E+GPGPG +TR++L
Sbjct: 7 LPPLREVIRQHALSARKSLGQNFLLDLNLTARIARAAAPLEDSTIVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R+V IE D R P L ++ P + GD M+F + + + +R
Sbjct: 67 ALGARRVVAIEHDERAIPALQDISARYPGRLEIVHGDAMTFDPRPLLAGER--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+I+ NLP+N++T L+I W+
Sbjct: 118 -AKIVANLPYNIATQLLIGWL 137
>gi|344923937|ref|ZP_08777398.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Candidatus Odyssella thessalonicensis L13]
Length = 282
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 18/163 (11%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
+RL + +++ ++ Y L A K L QNFLF + KI R+AG + V E+GPGPG +
Sbjct: 1 MRLDHLATVKATVEQYGLMAKKSLGQNFLFNMEIVRKIARSAGCLKEVTVLEIGPGPGGL 60
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TR++L +V IE DPR L L A+ + D ++ + Q++
Sbjct: 61 TRALLEAGAQEVVAIEHDPRCIIALKELVDAAEGKLQIIQADALTISPQDL--------- 111
Query: 126 SEGLPG--IRIIGNLPFNVSTPLIIKWIQA----ISENLLFPK 162
LP I+I+ NLP+NV T L+I+W+ +S L+F K
Sbjct: 112 ---LPSRPIKIVANLPYNVGTQLLIRWLHCLDNIVSMTLMFQK 151
>gi|414173159|ref|ZP_11427922.1| ribosomal RNA small subunit methyltransferase A [Afipia broomeae
ATCC 49717]
gi|410891811|gb|EKS39607.1| ribosomal RNA small subunit methyltransferase A [Afipia broomeae
ATCC 49717]
Length = 288
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 80/143 (55%), Gaps = 10/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P + D+I+ ++L A K L QNFL + LT +I R A + + E+GPGPG +TR++L
Sbjct: 7 LPPLSDVIRRFELSARKSLGQNFLLDLNLTSRIARAAAPLEDATIVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ R++ +E+D R P L+ +AQ P + D +F + + +R
Sbjct: 67 AQNVKRVIAVERDERAIPALEEIAQRYPGRLTIVNADATTFDPRPHLNGER--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
+I+ NLP+N++T L++ W+ A
Sbjct: 118 -AKIVANLPYNIATALLVDWLSA 139
>gi|334315693|ref|YP_004548312.1| dimethyladenosine transferase [Sinorhizobium meliloti AK83]
gi|407720093|ref|YP_006839755.1| ribosomal RNA small subunit methyltransferase A [Sinorhizobium
meliloti Rm41]
gi|418402567|ref|ZP_12976077.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sinorhizobium meliloti CCNWSX0020]
gi|334094687|gb|AEG52698.1| dimethyladenosine transferase [Sinorhizobium meliloti AK83]
gi|359503490|gb|EHK76042.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sinorhizobium meliloti CCNWSX0020]
gi|407318325|emb|CCM66929.1| Ribosomal RNA small subunit methyltransferase A [Sinorhizobium
meliloti Rm41]
Length = 274
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++V IE+D R P L + P + GD + + + G P
Sbjct: 67 ALGAKKVVAIERDSRCLPALAEIGAHYPGRLDIIEGDALKVDFEAL----------AGGP 116
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+RII NLP+NV T L++ W+
Sbjct: 117 -VRIIANLPYNVGTQLLVNWL 136
>gi|328544016|ref|YP_004304125.1| ribosomal RNA small subunit methyltransferase A [Polymorphum gilvum
SL003B-26A1]
gi|326413760|gb|ADZ70823.1| Ribosomal RNA small subunit methyltransferase A [Polymorphum gilvum
SL003B-26A1]
Length = 283
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 10/145 (6%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
R+ +P +R++I+ + L A K L QNFL + LT +I R A + V E+GPGPG +T
Sbjct: 3 RIDDLPPLREVIRAHGLDARKSLGQNFLLDLNLTSRIARAAAPLDACTVVEIGPGPGGLT 62
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
R++L R++ IEKD R P L +A P + GD + + +
Sbjct: 63 RALLAAGAGRVIAIEKDRRCLPALAEIADRYPGRLTVVEGDALEIDAATL---------A 113
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWI 151
G P ++I+ NLP+NV T L+I WI
Sbjct: 114 AGEP-VKIVANLPYNVGTQLLINWI 137
>gi|163759131|ref|ZP_02166217.1| dimethyladenosine transferase [Hoeflea phototrophica DFL-43]
gi|162283535|gb|EDQ33820.1| dimethyladenosine transferase [Hoeflea phototrophica DFL-43]
Length = 276
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 17/167 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RDI+ Y L K L QNFLF+ LT KI R AG + G + E+GPGPG +TR++L
Sbjct: 8 LPPLRDIVATYGLAPRKALGQNFLFDLNLTGKIARAAGPLEGFTIFEIGPGPGGLTRALL 67
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ R+V IE+D R P L+ ++ P + D + + +
Sbjct: 68 EQGAERVVAIERDQRCLPVLEEISAHYPGKLEVVEADALDVDLAALAGGAP--------- 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
+I+ NLP+NV T L+I W+ S L+F K Q +++
Sbjct: 119 -AKIVANLPYNVGTQLLINWLTVNPKAPFWTSMTLMFQKEVGQRIIA 164
>gi|83312817|ref|YP_423081.1| dimethyladenosine transferase [Magnetospirillum magneticum AMB-1]
gi|119365030|sp|Q2W0V3.1|RSMA_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|82947658|dbj|BAE52522.1| Dimethyladenosine transferase [Magnetospirillum magneticum AMB-1]
Length = 281
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 11/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L Q+FLF+ LT +I R AG +T V E+GPGPG +TR++L
Sbjct: 4 LPPLREVIARHGLDARKSLGQHFLFDLNLTGRIARAAGDLTVGSVIEIGPGPGGLTRALL 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ IE+D R + +A+A P + D M+ + R
Sbjct: 64 DAGARQVIAIERDDRAIAIQNEIAEAYPGRLEIMAADAMTVDAAELGEVPR--------- 114
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
RI+ NLP+N+ST L++ W++
Sbjct: 115 --RIVANLPYNISTALLLGWLR 134
>gi|90423811|ref|YP_532181.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18]
gi|119365055|sp|Q215S4.1|RSMA_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|90105825|gb|ABD87862.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18]
Length = 286
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+IK + L A K L QNFL + L +I R AG + G V E+GPGPG +TR++L
Sbjct: 7 LPPLRDVIKRHDLSARKSLGQNFLLDLNLLTRIARAAGPLDGATVIEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
A+++ IE+D R L +A P + D + + + R
Sbjct: 67 ALGAAKVIAIERDERALGALQEIAAHYPGRLEIVCADATIYDPRPLLGGAR--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
+I+ NLP+N++TPL+I W+
Sbjct: 118 -AKIVANLPYNIATPLLIGWLS 138
>gi|386395770|ref|ZP_10080548.1| dimethyladenosine transferase [Bradyrhizobium sp. WSM1253]
gi|385736396|gb|EIG56592.1| dimethyladenosine transferase [Bradyrhizobium sp. WSM1253]
Length = 286
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT +I R A + + + E+GPGPG +TR++L
Sbjct: 7 LPPLREVIRQHALSARKSLGQNFLLDLNLTARIARAAAPLEDSTIIEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ +E D R P L ++ P + GD MSF + + S +R
Sbjct: 67 ALGARRVIAVEHDERAIPALQEISARYPGRLDIVHGDAMSFDPRPLLSGER--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+I+ NLP+N++T L++ W+
Sbjct: 118 -AKIVANLPYNIATHLLVGWL 137
>gi|402849512|ref|ZP_10897743.1| Dimethyladenosine transferase [Rhodovulum sp. PH10]
gi|402500197|gb|EJW11878.1| Dimethyladenosine transferase [Rhodovulum sp. PH10]
Length = 296
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 83/143 (58%), Gaps = 7/143 (4%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ ++L A K L QNFL + LT KI R AG + G V EVGPGPG +TR++L
Sbjct: 7 LPPLRDVIRRHELSARKSLGQNFLLDLNLTGKIARAAGPLDGVTVVEVGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
AR++ +E+D R L +++ P + GD ++ + + +
Sbjct: 67 AEG-ARVIAVERDARALDALAEISERVPGRLEVVAGDALALDLSALAARAGGGG------ 119
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
+R++ NLP+N++TPL+I W+ A
Sbjct: 120 PVRVVANLPYNIATPLLIGWLSA 142
>gi|395787427|ref|ZP_10467028.1| ribosomal RNA small subunit methyltransferase A [Bartonella
birtlesii LL-WM9]
gi|395411851|gb|EJF78372.1| ribosomal RNA small subunit methyltransferase A [Bartonella
birtlesii LL-WM9]
Length = 276
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I Y+L+A K QNFLF+ LT KI AG I G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVINKYRLQAHKSFGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + Q P + D + +F +
Sbjct: 66 AKG-AIVTAIERDERCIPALLEIEQHYPQKLKLICNDALKQDFSKLFETYPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RII NLP+N+ T L++ W+ A
Sbjct: 119 --RIIANLPYNIGTQLLLNWLLA 139
>gi|407974537|ref|ZP_11155446.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Nitratireductor indicus C115]
gi|407430226|gb|EKF42901.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Nitratireductor indicus C115]
Length = 275
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 15/144 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFL + LT KI R AG +T + V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIAEHGLAAKKSLGQNFLLDLNLTAKIARAAGDLTASTVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
R+V +E+D R CL LA+ S P + GD + + +E
Sbjct: 66 LSGARRVVAVERDER---CLAALAEISDHYPGRLEVISGDALETDFAALAAEQ------- 115
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+N+ T L+++W+
Sbjct: 116 --GDTRIVANLPYNIGTELLVRWL 137
>gi|56697309|ref|YP_167675.1| dimethyladenosine transferase [Ruegeria pomeroyi DSS-3]
gi|62900467|sp|Q5LQN0.1|RSMA_SILPO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|56679046|gb|AAV95712.1| dimethyladenosine transferase [Ruegeria pomeroyi DSS-3]
Length = 279
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I ++L A K L QNFL + LT KI R AG ++ +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIASHQLSARKSLGQNFLLDLNLTAKIARQAGDLSECDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R P L +A A + GD + + P
Sbjct: 67 AEGARRVLAIEKDARCLPALAEIAAAYSGRLEVINGDALEIDPLAHMT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IRI NLP+NV T L+++W+
Sbjct: 116 PIRIAANLPYNVGTELLVRWL 136
>gi|398385828|ref|ZP_10543844.1| dimethyladenosine transferase [Sphingobium sp. AP49]
gi|397719644|gb|EJK80210.1| dimethyladenosine transferase [Sphingobium sp. AP49]
Length = 284
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R +I + L+A K L QNFL + +L D+I G+I EVGPGPG +TR+IL R
Sbjct: 12 LRAVIAAHGLQASKALGQNFLLDEQLLDRIAAIPGSIQDQPAFEVGPGPGGLTRAIL-RA 70
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
RLV +E+D R P L L QA P + GD M +E G
Sbjct: 71 GGRLVAVERDRRCLPALAELEQAFPGQLRVISGDAMEIDAH-----------AEAGDGAH 119
Query: 134 IIGNLPFNVSTPLIIKWIQA 153
II NLP+NV T L++ W+ A
Sbjct: 120 IIANLPYNVGTALLVGWLSA 139
>gi|197105173|ref|YP_002130550.1| dimethyladenosine transferase [Phenylobacterium zucineum HLK1]
gi|226732606|sp|B4RBS4.1|RSMA_PHEZH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|196478593|gb|ACG78121.1| dimethyladenosine transferase [Phenylobacterium zucineum HLK1]
Length = 285
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 20/164 (12%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
+ L +P++R+ ++ + L A K Q+FL + +T KI R A G+ V EVGPGPG +
Sbjct: 1 MSLETLPTLREALEAHGLWAKKAFGQHFLLDLNITRKIARLAQVGDGDVVIEVGPGPGGL 60
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHL--GDVMSFTMQNMFSEDRRR 123
TR++L AR++ +EKD RF P L +A A+P H L GD ++ +
Sbjct: 61 TRALLETG-ARVIAVEKDERFRPLLQEVADAAP---HLTLVFGDALTADEAAL------- 109
Query: 124 DWSEGLPGIRIIGNLPFNVSTPLIIKWIQA----ISENLLFPKH 163
S G P ++ NLP+NV TPL+IKW+ S L+F K
Sbjct: 110 --SAGRPA-HLVSNLPYNVGTPLLIKWLTGPWTPASLTLMFQKE 150
>gi|402822040|ref|ZP_10871547.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sphingomonas sp. LH128]
gi|402264415|gb|EJU14271.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sphingomonas sp. LH128]
Length = 274
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFLF+ +L D+I G++ G +V EVGPGPG +TR++L
Sbjct: 4 LPPLREVIARHGLSASKALGQNFLFDEQLLDRIAAIPGSLDGKDVLEVGPGPGGLTRALL 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R A + IE D R P L LA+A P + GD + + +F+ +
Sbjct: 64 -RAGANVTAIEMDRRCLPALAELAEAFPGKLKVIEGDALKIDPKTLFAGE---------- 112
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
I+ NLP+NV T L W+
Sbjct: 113 -YHILSNLPYNVGTALFTGWLSG 134
>gi|399078286|ref|ZP_10752822.1| dimethyladenosine transferase [Caulobacter sp. AP07]
gi|398033861|gb|EJL27146.1| dimethyladenosine transferase [Caulobacter sp. AP07]
Length = 273
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 16/162 (9%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
+ L +P +R+++ + L A K Q+FL + +T KI R AG G+ V EVGPGPG +
Sbjct: 1 MSLADLPPLREVLAEHDLLANKSFGQHFLLDLNITRKIARLAGVGEGDTVIEVGPGPGGL 60
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TR++L AR+V +E D RF P L+ LA A+ + GD + M +
Sbjct: 61 TRALLETG-ARVVAVEMDRRFLPLLEDLAVAADGRLTIVQGDALKVDMAAI--------- 110
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQA----ISENLLFPKH 163
G P ++ NLP+NV TPL+I W+ +S L+F K
Sbjct: 111 -AGGPA-HMVSNLPYNVGTPLLINWLTGPFRPLSMTLMFQKE 150
>gi|319784428|ref|YP_004143904.1| dimethyladenosine transferase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317170316|gb|ADV13854.1| dimethyladenosine transferase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 279
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L+A K L QNFL + LT KI R AG ++ V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHGLQAKKALGQNFLLDLNLTGKIARTAGDLSDATVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
+++ IE+D R CL LA+ S P + GD ++ F+ R
Sbjct: 66 ANGARQVIAIERDER---CLAALAEVSGHYPGRLEVVSGDA----LKTDFTGLAGRATGN 118
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
G P ++I+ NLP+N+ T L+++W+ S L+F + + +V+
Sbjct: 119 GGP-VKIVANLPYNIGTELLVRWLTVSDWPPFYTSMTLMFQREVAERIVA 167
>gi|23015617|ref|ZP_00055388.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
[Magnetospirillum magnetotacticum MS-1]
Length = 276
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 11/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I + L A K L Q+FLF+ LT +I R AG ++ V E+GPGPG +TR++L
Sbjct: 4 LPPLRDVIARHGLDARKSLGQHFLFDLNLTGRIARAAGDLSVGTVIEIGPGPGGLTRALL 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ ++ IE+D R + +A+A P + D M+ + R
Sbjct: 64 DAGARHVIAIERDDRAIAIQNEIAEAYPGRLEIIAADAMTIDAAGLGEMPR--------- 114
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
RI+ NLP+N+ST L++ W++
Sbjct: 115 --RIVANLPYNISTALLLGWLR 134
>gi|84516318|ref|ZP_01003678.1| dimethyladenosine transferase [Loktanella vestfoldensis SKA53]
gi|84510014|gb|EAQ06471.1| dimethyladenosine transferase [Loktanella vestfoldensis SKA53]
Length = 281
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I Y L K L QNFL + LT +I R AG + G +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIARYDLAPKKSLGQNFLLDLNLTARIARLAGDLAGADVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKDPR P L +A P + GD ++
Sbjct: 67 ASGARRVLAIEKDPRCLPALAEIAARFPGRLQVIEGDALAIDPLEYLQAP---------- 116
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I++ NLP+NV T L+++W+
Sbjct: 117 -IKVAANLPYNVGTELLVRWL 136
>gi|395766854|ref|ZP_10447392.1| ribosomal RNA small subunit methyltransferase A [Bartonella doshiae
NCTC 12862]
gi|395415466|gb|EJF81900.1| ribosomal RNA small subunit methyltransferase A [Bartonella doshiae
NCTC 12862]
Length = 276
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I +Y L+A K L QNFLF+ LT KI AG I G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIDIYGLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + + P + D + +F + +
Sbjct: 66 AKG-AIVTAIERDERCIPALLEIEKHYPKRLKLICNDALKQDFSRLFEKSPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RII NLP+N+ T L++ W+
Sbjct: 119 --RIIANLPYNIGTQLLLNWL 137
>gi|90419497|ref|ZP_01227407.1| dimethyladenosine transferase [Aurantimonas manganoxydans SI85-9A1]
gi|90336434|gb|EAS50175.1| dimethyladenosine transferase [Aurantimonas manganoxydans SI85-9A1]
Length = 279
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 7/141 (4%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R +++ + L + L QNFL + LT +I R A + G + E+GPGPG +TR++L
Sbjct: 7 LPPLRAVLEEHGLDPKRSLGQNFLLDLNLTGRIARQALPLEGATIVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +V++EKD R P L+ +A P + D + F + + D G
Sbjct: 67 AEGASHVVVVEKDSRCIPALEAIAAHYPGRLDIRRADALDFDLAEVAHPD-------GAD 119
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++I+ NLP+NV T L++ WI
Sbjct: 120 ALKIVANLPYNVGTQLLLNWI 140
>gi|374575005|ref|ZP_09648101.1| dimethyladenosine transferase [Bradyrhizobium sp. WSM471]
gi|374423326|gb|EHR02859.1| dimethyladenosine transferase [Bradyrhizobium sp. WSM471]
Length = 286
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT +I R A + + + E+GPGPG +TR++L
Sbjct: 7 LPPLREVIRQHALSARKSLGQNFLLDLNLTARIARAAAPLEDSTIIEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE D R P L ++ P + GD M+F + + S +R
Sbjct: 67 ALGARRVIAIEHDERAIPALQDISARYPGRLEIVHGDAMTFDPRPLLSGER--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+I+ NLP+N++T L++ W+
Sbjct: 118 -AKIVANLPYNIATHLLVGWL 137
>gi|424890988|ref|ZP_18314587.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
WSM2012]
gi|393173206|gb|EJC73251.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
WSM2012]
Length = 275
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + + EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGPLEDATIFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R P L + P + GD + + + E
Sbjct: 67 ALGAGKVIAIERDARCLPALAEIVDHYPGRLEVIEGDALKTDFEALAPEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I+II NLP+NV T L++ W+
Sbjct: 118 -IKIIANLPYNVGTQLLVNWL 137
>gi|329850882|ref|ZP_08265727.1| dimethyladenosine transferase [Asticcacaulis biprosthecum C19]
gi|328841197|gb|EGF90768.1| dimethyladenosine transferase [Asticcacaulis biprosthecum C19]
Length = 275
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P++R+ ++ + L A K Q+FL + +T KIVR G G+ V EVGPGPG +TR++L
Sbjct: 4 LPTLRESLEQHGLMAKKAFGQHFLLDLNITRKIVRLGGPFDGDTVIEVGPGPGGLTRALL 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
A ++ +EKD RF L L + GD + + + DR+ P
Sbjct: 64 ESEAAHVIAVEKDSRFLELLGELNEVFGDRFEVIEGDALKVDEAQLLA-DRKLS-----P 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I+ NLP+NV TPL+IKW+
Sbjct: 118 QAHIVSNLPYNVGTPLLIKWL 138
>gi|349685592|ref|ZP_08896734.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Gluconacetobacter oboediens 174Bp2]
Length = 283
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 22/170 (12%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R+ I ++L A K L Q+FL +P +T +I AG ++G V EVGPGPG +TR++L+
Sbjct: 13 LRETIARHELDARKALGQHFLLDPGITARIASLAGNLSGQHVVEVGPGPGGLTRALLDTD 72
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A +V +E D R + LA +P + D M + + R +
Sbjct: 73 AASIVAVEVDTRAVAVITELAAHAPDRLQVIEADAMRCDLTTLCPAPR-----------Q 121
Query: 134 IIGNLPFNVSTPLIIKWIQAISE----NLLFPKHKRQLVVSLLERACVKP 179
+I NLP+NV TPL++ W++ +E L+F + + ER C P
Sbjct: 122 VIANLPYNVGTPLLVGWLRQAAEWSRLTLMFQQ-------EVAERICAAP 164
>gi|158425944|ref|YP_001527236.1| dimethyladenosine transferase [Azorhizobium caulinodans ORS 571]
gi|172047844|sp|A8HVI9.1|RSMA_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|158332833|dbj|BAF90318.1| rRNA 16S rRNA dimethylase [Azorhizobium caulinodans ORS 571]
Length = 291
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT +I R +G + G V EVGPGPG +TR++L
Sbjct: 7 LPPLREVIRAHGLSAQKSLGQNFLLDLNLTARIARGSGPLEGATVVEVGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R L+ +A A P + GD + ++ D +E
Sbjct: 67 ALGARKVIAIERDHRCIAALNEIAAAYPGRLEIIEGDALKVDVRPHL------DGAEA-- 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
R++ NLP+NV T L++ W+
Sbjct: 119 --RVVANLPYNVGTQLLVGWLS 138
>gi|395778368|ref|ZP_10458880.1| ribosomal RNA small subunit methyltransferase A [Bartonella
elizabethae Re6043vi]
gi|423715321|ref|ZP_17689545.1| ribosomal RNA small subunit methyltransferase A [Bartonella
elizabethae F9251]
gi|395417576|gb|EJF83913.1| ribosomal RNA small subunit methyltransferase A [Bartonella
elizabethae Re6043vi]
gi|395430157|gb|EJF96208.1| ribosomal RNA small subunit methyltransferase A [Bartonella
elizabethae F9251]
Length = 276
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I +Y L+A K L QNFLF+ LT KI R AG I G V E+GPGPG +TR++L
Sbjct: 6 LPPLREVIDIYGLQAHKSLGQNFLFDLNLTSKIARQAGNIEGKPVLEIGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + + P + D + +F +
Sbjct: 66 AKG-AIVTAIERDERCIPALLEIEKYYPNKLKVICNDALKQDFSKLFETIPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RII NLP+N+ T L + W+
Sbjct: 119 --RIIANLPYNIGTQLFLNWL 137
>gi|115525299|ref|YP_782210.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53]
gi|122295624|sp|Q07LF4.1|RSMA_RHOP5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|115519246|gb|ABJ07230.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisA53]
Length = 287
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT +I R AG + + V EVGPGPG +TR++L
Sbjct: 7 LPPLREVIQRHDLSARKSLGQNFLLDLNLTTRIARAAGPLEDSTVIEVGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE+D R L ++ P + D M++ + + R
Sbjct: 67 ALGAKRVIAIERDERALGALAEISAHYPGRLDIVCADAMTYDPRPLLGGAR--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
+I+ NLP+N++TPL+I W++
Sbjct: 118 -AKIVANLPYNIATPLLIGWLE 138
>gi|114799371|ref|YP_760849.1| dimethyladenosine transferase [Hyphomonas neptunium ATCC 15444]
gi|114739545|gb|ABI77670.1| dimethyladenosine transferase [Hyphomonas neptunium ATCC 15444]
Length = 285
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 80/164 (48%), Gaps = 17/164 (10%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP 84
A K L Q+FLF+P + + AG + G V EVGPGPG +TR+ILN PA L+ +E DP
Sbjct: 22 ARKALGQHFLFDPSILKRAANAAGPLKGKTVIEVGPGPGGLTRAILNEEPALLIAVETDP 81
Query: 85 RFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST 144
RF+ L +A + D + + E + + II NLP+NV T
Sbjct: 82 RFSEALMSWPEAKNGRLQVIARDARKVHWEKVLQE------AGAATPVMIIANLPYNVGT 135
Query: 145 PLIIKWIQAISEN----LLFPKHKRQLVVSLLERACVKPILRPY 184
PL+I W++A L+F + + ER C +P Y
Sbjct: 136 PLLIDWLKAGDWRGPMALMFQRE-------VAERICAQPDTDAY 172
>gi|384219390|ref|YP_005610556.1| rRNA-adenine N6,N6-dimethyltransferase [Bradyrhizobium japonicum
USDA 6]
gi|354958289|dbj|BAL10968.1| rRNA-adenine N6,N6-dimethyltransferase [Bradyrhizobium japonicum
USDA 6]
Length = 285
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT +I R A + + + E+GPGPG +TR++L
Sbjct: 7 LPPLREVIRQHALSARKSLGQNFLLDLNLTARIARAAAPLEDSTIVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE D R P L ++ P + GD M+F + + + +R
Sbjct: 67 ALGAKRVIAIEHDERAIPALQDISARYPDRLEIVHGDAMTFDPRPLLNGER--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+I+ NLP+N++T L+I W+
Sbjct: 118 -AKIVANLPYNIATQLLIGWL 137
>gi|346992933|ref|ZP_08861005.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Ruegeria sp. TW15]
Length = 280
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I ++L A K L QNFL + LT KI R AG +T +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTQCDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ ++V +EKD R L+ +A A P + GD + + P
Sbjct: 67 SEGARKVVAVEKDTRCIAALNDIAAAYPGRLEVINGDALEIDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I + NLP+NV T L+++W+
Sbjct: 116 PILVAANLPYNVGTELLVRWL 136
>gi|49475334|ref|YP_033375.1| dimethyladenosine transferase [Bartonella henselae str. Houston-1]
gi|62900526|sp|Q6G438.1|RSMA_BARHE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|49238140|emb|CAF27348.1| Dimethyladenosine transferase [Bartonella henselae str. Houston-1]
Length = 276
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I Y L+A K L QNFLF+ LT KI AG I G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVINTYGLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + + P + D + +F +
Sbjct: 66 AKG-AIVTAIERDERCIPALLEIEKHYPQKLKIICNDALKQDFSKLFEISPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RII NLP+N+ T L++ W+ A
Sbjct: 119 --RIIANLPYNIGTQLLLNWLLA 139
>gi|83952311|ref|ZP_00961043.1| dimethyladenosine transferase [Roseovarius nubinhibens ISM]
gi|83837317|gb|EAP76614.1| dimethyladenosine transferase [Roseovarius nubinhibens ISM]
Length = 280
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R +I + L A K L QNFL + LT KI R AG ++ +V E+GPGPG +TR +L
Sbjct: 7 LPPLRQVINDHDLVARKSLGQNFLLDLNLTAKIARQAGDLSTADVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R P L +A A P + GD + + P
Sbjct: 67 AEGARRVLAIEKDSRCLPALAEIAAAYPGRLEVINGDALEVDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I I NLP+NV T L+++W+
Sbjct: 116 PIHIAANLPYNVGTELLVRWL 136
>gi|334345227|ref|YP_004553779.1| ribosomal RNA small subunit methyltransferase A [Sphingobium
chlorophenolicum L-1]
gi|334101849|gb|AEG49273.1| Ribosomal RNA small subunit methyltransferase A [Sphingobium
chlorophenolicum L-1]
Length = 280
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 76/142 (53%), Gaps = 12/142 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L+A K L QNFL + +L D+I G I EVGPGPG +TR+IL
Sbjct: 9 LPPLREVIAAHGLQASKALGQNFLLDEQLLDRIAAIPGPIKDRPAFEVGPGPGGLTRAIL 68
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R A+LV +E+D R P L L A P + GD M D R + E
Sbjct: 69 -RAGAKLVAVERDHRCLPALAELDTAFPGQLRVISGDAMEV--------DARAEAGE--- 116
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
G II NLP+NV T L+I W+
Sbjct: 117 GAHIIANLPYNVGTALLIGWLS 138
>gi|288958701|ref|YP_003449042.1| dimethyladenosine transferase [Azospirillum sp. B510]
gi|288911009|dbj|BAI72498.1| dimethyladenosine transferase [Azospirillum sp. B510]
Length = 291
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I + L A K L QNFL + LT +I R+A G EVGPGPG +TR++L
Sbjct: 8 LPPLRDVIARFGLEARKALGQNFLLDLNLTGRIARSANLPAGTTAIEVGPGPGGLTRALL 67
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D RF L + +A+ + D ++ + + R
Sbjct: 68 ATNAVKVIAIERDRRFIEALQDVIEAAQGRLSIVEADALTVDPEELAPAPR--------- 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAI----SENLLFPKHKRQLVVSLLERACVKPILRPY-Q 185
I+ NLP+NV+TPL++ W+ I S L+F K + +R KP + Y +
Sbjct: 119 --AIVANLPYNVATPLLLGWLARIDAYVSLTLMFQKE-------VADRLVAKPGSKAYGR 169
Query: 186 LSV 188
LSV
Sbjct: 170 LSV 172
>gi|374292280|ref|YP_005039315.1| Dimethyladenosine transferase [Azospirillum lipoferum 4B]
gi|357424219|emb|CBS87086.1| Dimethyladenosine transferase [Azospirillum lipoferum 4B]
Length = 300
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I + L A K L QNFL + LT +I R+A G EVGPGPG +TR++L
Sbjct: 21 LPPLRDVIARFGLEARKALGQNFLLDLNLTGRIARSANLPAGTTAIEVGPGPGGLTRALL 80
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D RF L + +AS + D ++ + + R
Sbjct: 81 ATDAVKVIAIERDRRFIEALQDVIEASQGRLSIVEADALTVDPEELAPAPR--------- 131
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAI----SENLLFPKHKRQLVVSLLERACVKPILRPY-Q 185
I+ NLP+NV+TPL++ W+ I S L+F K + +R KP + Y +
Sbjct: 132 --AIVANLPYNVATPLLLGWLARIEAYVSLTLMFQKE-------VADRLVAKPGSKAYGR 182
Query: 186 LSV 188
LSV
Sbjct: 183 LSV 185
>gi|209548666|ref|YP_002280583.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|226732614|sp|B5ZWD8.1|RSMA_RHILW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|209534422|gb|ACI54357.1| dimethyladenosine transferase [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 275
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + + EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEEATIFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ +E+D R P L +A P + GD + + + +
Sbjct: 67 ALGARKVIAVERDTRCLPALAEIADHYPGRLEVIEGDALKTDFEALAPDGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I+II NLP+NV T L++ W+
Sbjct: 118 -IKIIANLPYNVGTQLLVNWL 137
>gi|85706337|ref|ZP_01037431.1| dimethyladenosine transferase [Roseovarius sp. 217]
gi|85669110|gb|EAQ23977.1| dimethyladenosine transferase [Roseovarius sp. 217]
Length = 283
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P + +I + L A K L QNFL + LT KI R AG +T +V E+GPGPG +TR +L
Sbjct: 7 LPPLARVIAAHGLSARKSLGQNFLLDLNLTSKIARQAGDLTTCDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ IEKD R P L +A+A+P + D + + P
Sbjct: 67 MEGARHVLAIEKDARCLPALHEIAEAAPGRLTVLNADALDLDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR++ NLP+NV T L+I+W+
Sbjct: 116 PIRVVSNLPYNVGTELLIRWL 136
>gi|405380013|ref|ZP_11033858.1| dimethyladenosine transferase [Rhizobium sp. CF142]
gi|397323628|gb|EJJ28021.1| dimethyladenosine transferase [Rhizobium sp. CF142]
Length = 275
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT K+ R AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLREVIQRHGLDARKALGQNFLLDLNLTQKVARTAGALDDATVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ +E+D R P L +A P + GD + + + E
Sbjct: 67 ALGAKKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKTDFEALAPEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ W+
Sbjct: 118 -VKIIANLPYNVGTQLLVNWL 137
>gi|157804052|ref|YP_001492601.1| dimethyladenosine transferase [Rickettsia canadensis str. McKiel]
gi|379023198|ref|YP_005299859.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
canadensis str. CA410]
gi|166221697|sp|A8EZN3.1|RSMA_RICCK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|157785315|gb|ABV73816.1| dimethyladenosine transferase [Rickettsia canadensis str. McKiel]
gi|376324136|gb|AFB21377.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia canadensis str. CA410]
Length = 270
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 31/218 (14%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI L+ + LK+ QNF+F+ L KIVR + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAALHHINPLKKHGQNFIFDSSLCHKIVRVSNLEENSRVLEIGPGSGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ P L +IE D RF P L+ + + P ++ D + + ++ G
Sbjct: 62 QKNPESLTVIETDERFIPLLNEIKEYYP-NLNIIKQDALKINLTDL-----------GYD 109
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSVQ 189
+ II NLP+++ T L+I+W++ E L L L+ER C P + Y +LSV
Sbjct: 110 KVTIISNLPYHIGTELVIRWLK---EARLITSMTLMLQKELVERICAMPSTKAYGRLSV- 165
Query: 190 EFGQIC--LAYRDMCEEM--------PGLYEYTLEDTP 217
IC +A + C E+ P +Y ++ TP
Sbjct: 166 ----ICQLIAKVEKCFEVAPTAFYPPPKVYSAIVKLTP 199
>gi|57239132|ref|YP_180268.1| dimethyladenosine transferase [Ehrlichia ruminantium str.
Welgevonden]
gi|58579080|ref|YP_197292.1| dimethyladenosine transferase [Ehrlichia ruminantium str.
Welgevonden]
gi|93141342|sp|Q5HBC6.1|RSMA_EHRRW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|57161211|emb|CAH58125.1| dimethyladenosine transferase [Ehrlichia ruminantium str.
Welgevonden]
gi|58417706|emb|CAI26910.1| Dimethyladenosine transferase [Ehrlichia ruminantium str.
Welgevonden]
Length = 262
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 15/146 (10%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y + K+LSQ F+ +TDKIV AG I+ + E+GPG G++T SIL + P +L+ I
Sbjct: 5 YMINPKKELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLISI 64
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
EKD R P D + + F L D + ++N+ P +++I NLP+
Sbjct: 65 EKDSRLLPIHDKIIKKFQGKYEFILSDALDIDLRNI-----------AKPPVKVIANLPY 113
Query: 141 NVSTPLIIKWIQAI----SENLLFPK 162
+++T L+IKWI I S L+F K
Sbjct: 114 SIATLLLIKWINYINFFHSFTLMFQK 139
>gi|27379213|ref|NP_770742.1| dimethyladenosine transferase [Bradyrhizobium japonicum USDA 110]
gi|33516930|sp|Q89MU0.1|RSMA_BRAJA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|27352364|dbj|BAC49367.1| rRNA-adenine N6,N6-dimethyltransferase [Bradyrhizobium japonicum
USDA 110]
Length = 284
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT +I R A + + + E+GPGPG +TR++L
Sbjct: 7 LPPLREVIRQHALSARKSLGQNFLLDLNLTARIARAAAPLDNSTIVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R+V IE D R P L ++ P + GD M+F + + + +
Sbjct: 67 ALGARRVVAIEHDERAIPALQDISARYPGRLEIVHGDAMTFDPRPLLNGE---------- 116
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+I+ NLP+N++T L+I W+
Sbjct: 117 SAKIVANLPYNIATQLLINWL 137
>gi|58617138|ref|YP_196337.1| dimethyladenosine transferase [Ehrlichia ruminantium str. Gardel]
gi|93141341|sp|Q5FH30.1|RSMA_EHRRG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|58416750|emb|CAI27863.1| Dimethyladenosine transferase [Ehrlichia ruminantium str. Gardel]
Length = 262
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 15/146 (10%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y + K+LSQ F+ +TDKIV AG I+ + E+GPG G++T SIL + P +L+ I
Sbjct: 5 YMINPKKELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLISI 64
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
EKD R P D + + F L D + ++N+ P +++I NLP+
Sbjct: 65 EKDSRLLPIHDKIIKEFQGKYEFILSDALDIDLRNI-----------AKPPVKVIANLPY 113
Query: 141 NVSTPLIIKWIQAI----SENLLFPK 162
+++T L+IKWI I S L+F K
Sbjct: 114 SIATLLLIKWINYINFFHSFTLMFQK 139
>gi|87198908|ref|YP_496165.1| dimethyladenosine transferase [Novosphingobium aromaticivorans DSM
12444]
gi|119365043|sp|Q2G9Z2.1|RSMA_NOVAD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|87134589|gb|ABD25331.1| dimethyladenosine transferase [Novosphingobium aromaticivorans DSM
12444]
Length = 273
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD++ + L A K L QNFLF+ +L D+I R G + G V EVGPGPG +TR++L
Sbjct: 4 LPPLRDVVNRHGLYATKALGQNFLFDEQLLDRIARVPGKLKGENVLEVGPGPGGLTRALL 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R A++ IE D R P L LA A P + GD + +F W
Sbjct: 64 -RAGAKVTAIEMDKRCLPALAELADAFPGQLTVIEGDATKIAPETLFDG----PW----- 113
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
+ NLP+NV T L W+
Sbjct: 114 --HVAANLPYNVGTQLFTGWLSG 134
>gi|319407063|emb|CBI80700.1| dimethyladenosine transferase [Bartonella sp. 1-1C]
Length = 276
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R+II YKL+A K L QNF+F+ LT KI AG I G V E+GPGPG +TR++L
Sbjct: 6 LPPLRNIINKYKLQANKSLGQNFIFDLNLTAKIAHQAGNIEGKPVLEIGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + + P + D + +F +
Sbjct: 66 AKG-AIVTAIERDERCMPALLEIEEHYPQKLKLIFNDALKQDFPKLFEAYPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RII NLP+N+ T L++ W+
Sbjct: 119 --RIIANLPYNIGTQLLLNWL 137
>gi|84684875|ref|ZP_01012775.1| dimethyladenosine transferase [Maritimibacter alkaliphilus
HTCC2654]
gi|84667210|gb|EAQ13680.1| dimethyladenosine transferase [Maritimibacter alkaliphilus
HTCC2654]
Length = 280
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFL + LT KI R AG ++ +V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIATHGLVAKKSLGQNFLLDLNLTAKIARQAGDLSACDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ +EKD R L +++A P + D + + P
Sbjct: 67 AEGARRVLAVEKDARAMSALAEISEAYPGRLEVLNADALEIDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IRI+ NLP+NV T L+ +W+
Sbjct: 116 PIRIVANLPYNVGTELLTRWL 136
>gi|157826080|ref|YP_001493800.1| dimethyladenosine transferase [Rickettsia akari str. Hartford]
gi|166221695|sp|A8GPG7.1|RSMA_RICAH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|157800038|gb|ABV75292.1| dimethyladenosine transferase [Rickettsia akari str. Hartford]
Length = 273
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 16/179 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI + +++ LK+ QNF+F+ L DKIVR + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHVASHQINPLKKHGQNFIFDSSLCDKIVRASHLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ P L +IE D RF P L+ + + P ++ D + + ++ D+ +
Sbjct: 62 QKNPESLTVIETDERFIPLLNEIKEYYPN-LNIIKQDALKINLTDL-------DYDK--- 110
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
+ II NLP+++ T L+I+W++ E L L ++ER C P + Y +LSV
Sbjct: 111 -VTIISNLPYHIGTELVIRWLK---EARLITDMTLMLQKEVVERICAMPSTKAYGRLSV 165
>gi|409401342|ref|ZP_11251154.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Acidocella sp. MX-AZ02]
gi|409129900|gb|EKM99715.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Acidocella sp. MX-AZ02]
Length = 276
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 95/194 (48%), Gaps = 24/194 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PS+ D I+ + LRA K L Q+FL +P L +I AG++ G V E+GPGPG +TR++L
Sbjct: 6 LPSLADTIRTFDLRADKSLGQHFLLDPALLSRIAAAAGSLKGVNVIEIGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
A + IE D R + LA + + + ++ R D + +P
Sbjct: 66 ESEAAHVTAIEFDKRAVAAITQLAGTTE-------------RLSIIEADAMRADLAALVP 112
Query: 131 GIR-IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQ 189
R I+ NLP+N+ T L++ W+Q ++ F + + R C +P +
Sbjct: 113 APRAIVANLPYNIGTLLLVNWLQNAAD---FQSMTLMFQLEVAARVCAQP-------NTG 162
Query: 190 EFGQICLAYRDMCE 203
+G++ + + +C+
Sbjct: 163 AYGRVSVLAQWLCD 176
>gi|83945291|ref|ZP_00957640.1| dimethyladenosine transferase [Oceanicaulis sp. HTCC2633]
gi|83851461|gb|EAP89317.1| dimethyladenosine transferase [Oceanicaulis sp. HTCC2633]
Length = 284
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 12/149 (8%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
+ L +P +R++I + L A K+ Q++L + LT KI R G ++ V EVGPGPG +
Sbjct: 1 MSLDQLPPLREVIAEHGLGADKRFGQHYLLDLNLTAKIARLCGDMSEATVFEVGPGPGGL 60
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TR +L+ AR+ +IEKD RF P L ++ A P D + + E
Sbjct: 61 TRGLLSEGAARVTVIEKDRRFIPALAQISDAVPGRFSIIEADALKVDESTLPFE------ 114
Query: 126 SEGLPGIRIIG-NLPFNVSTPLIIKWIQA 153
G RI+ NLP+NV T L+IKW++A
Sbjct: 115 -----GSRILASNLPYNVGTALLIKWLEA 138
>gi|148553332|ref|YP_001260914.1| dimethyladenosine transferase [Sphingomonas wittichii RW1]
gi|148498522|gb|ABQ66776.1| dimethyladenosine transferase [Sphingomonas wittichii RW1]
Length = 276
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 77/144 (53%), Gaps = 12/144 (8%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITR 67
LP +P +R++I + L A K L QNFL + +L D+I R G + G V EVGPGPG +TR
Sbjct: 5 LPDLPPLREVIARHGLSANKALGQNFLLDGQLLDRIARVPGDLDGATVYEVGPGPGGLTR 64
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
++L A +V +E+D R L+ L QAS + D M D R +E
Sbjct: 65 ALLG-AGASVVAVERDDRCLAALEELNQASGGRLRVISADAMKI--------DER---AE 112
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWI 151
G I NLP+NV T L ++W+
Sbjct: 113 AGDGAHIASNLPYNVGTALFVRWM 136
>gi|167646487|ref|YP_001684150.1| dimethyladenosine transferase [Caulobacter sp. K31]
gi|167348917|gb|ABZ71652.1| dimethyladenosine transferase [Caulobacter sp. K31]
Length = 288
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITR 67
L +P +R+++ + L A K Q+FL + +T KI R AG G+ V EVGPGPG +TR
Sbjct: 18 LADLPPLREVLAEHDLLANKSFGQHFLLDLNITRKIARLAGVGEGDTVIEVGPGPGGLTR 77
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
++L AR+V +E D RF P L+ L+ A+ + GD + M +
Sbjct: 78 TLLETG-ARVVAVEMDKRFLPLLEDLSVAADGRLTIVQGDALKVDMAAV----------A 126
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWIQA----ISENLLFPKH 163
G P ++ NLP+NV TPL+I W+ +S L+F K
Sbjct: 127 GGPA-HMVSNLPYNVGTPLLINWLTGPFRPLSMTLMFQKE 165
>gi|340777536|ref|ZP_08697479.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Acetobacter aceti NBRC 14818]
Length = 281
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 105/221 (47%), Gaps = 32/221 (14%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+ +I + L A L Q+FL +P +T++IV +G + G V EVGPGPG +TR++L+
Sbjct: 10 LASVINRHNLAARHSLGQHFLLDPGITERIVELSGPLQGRHVVEVGPGPGGLTRALLDSP 69
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A + +E D R ++ L +P + D S + + R R
Sbjct: 70 AASIAAVEVDSRAIGVIEELVAEAPDRLKLVQADATSLDLTTLCPAPR-----------R 118
Query: 134 IIGNLPFNVSTPLIIKWIQAISE----NLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
I+ NLP+NV+TPL+I W++ ++ L+F QL V+ ER C +P Y +L V
Sbjct: 119 IVANLPYNVATPLLIGWLRQAAQWERLTLMF-----QLEVA--ERICAEPGSEHYGRLGV 171
Query: 189 QEFGQICLAYRDMCEEMPG-------LYEYTLEDTPGDIEP 222
Q C + PG ++ +E TP D +P
Sbjct: 172 --ISQWCATCSQVMRLPPGAFSPPPKVWSSVVEITPHDEQP 210
>gi|163746453|ref|ZP_02153811.1| dimethyladenosine transferase [Oceanibulbus indolifex HEL-45]
gi|161380338|gb|EDQ04749.1| dimethyladenosine transferase [Oceanibulbus indolifex HEL-45]
Length = 287
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I ++L A K L QNFL + LT KI R AG + +V E+GPGPG +TR +L
Sbjct: 14 LPPLREVINTHELAARKSLGQNFLLDLNLTAKIARQAGDMADCDVLEIGPGPGGLTRGLL 73
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ IEKD R P L +A+ P + GD + + + P
Sbjct: 74 AEGARHVLAIEKDRRCLPALAEVAEHYPGRLTVIEGDALEIDPLSHLT-----------P 122
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR+ NLP+NV T L+++W+
Sbjct: 123 PIRVAANLPYNVGTELLVRWL 143
>gi|319404051|emb|CBI77639.1| dimethyladenosine transferase [Bartonella rochalimae ATCC BAA-1498]
Length = 276
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I YKL+A K L QNF+F+ LT KI AG I G V E+GPGPG +TR++L
Sbjct: 6 LPPLRNVISKYKLQANKSLGQNFIFDLNLTAKIAHQAGNIEGKPVLEIGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + + P + D + +F +
Sbjct: 66 AKG-AIVTAIERDERCMPALLEIEEHYPQKLKLIFNDALKQDFPKLFEAYPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RII NLP+N+ T L++ W+
Sbjct: 119 --RIIANLPYNIGTQLLLNWL 137
>gi|381166246|ref|ZP_09875463.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Phaeospirillum
molischianum DSM 120]
gi|380684693|emb|CCG40275.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Phaeospirillum
molischianum DSM 120]
Length = 279
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 95/196 (48%), Gaps = 21/196 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L Q+FLF+ LT +I R AG ++ V E+GPGPG +TR++L
Sbjct: 4 LPPLREVIARHGLDARKSLGQHFLFDLNLTGRIARAAGDLSVGTVIEIGPGPGGLTRALL 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ IE+D R D +A A P + D + + R
Sbjct: 64 DAGARQVIAIERDDRAIAIQDEIAAAYPGRLQIIAADALEIDAATLGETPR--------- 114
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQE 190
RI+ NLP+N+ST L++ W++ F + +++R P +
Sbjct: 115 --RIVANLPYNISTVLLLAWLRRAEA---FERMVLMFQKEVVDRLAAAP-------GSSQ 162
Query: 191 FGQICLAYRDMCEEMP 206
+G++ + + +CE P
Sbjct: 163 YGRLSVITQWLCEVRP 178
>gi|444311673|ref|ZP_21147277.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Ochrobactrum intermedium M86]
gi|443485003|gb|ELT47801.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Ochrobactrum intermedium M86]
Length = 278
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L K L QNFLF+ LT KI R AG++ V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGSLQDQPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R CLD LA+ + H + + +D + EG P
Sbjct: 66 AQG-AYVTAIERDER---CLDALAE-----IEAHYPGRLRIISGDALEQDFSTLFPEG-P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L++ W+
Sbjct: 116 KPRIVANLPYNVGTQLLLNWL 136
>gi|407786212|ref|ZP_11133358.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Celeribacter baekdonensis B30]
gi|407201944|gb|EKE71940.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Celeribacter baekdonensis B30]
Length = 280
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG ++ +V EVGPGPG +TR +L
Sbjct: 7 LPPLRDVIERHGLVAKKSLGQNFLLDLNLTSKIARLAGDLSKCDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ +EKD R LD ++ P + D + + P
Sbjct: 67 AEGARKVLAVEKDSRAIAALDEISAIYPGRLEVLNADALEIDPLERLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+RII NLP+N+ T L+++W+
Sbjct: 116 PVRIIANLPYNIGTELLVRWL 136
>gi|402486303|ref|ZP_10833135.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rhizobium sp. CCGE 510]
gi|401814959|gb|EJT07289.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rhizobium sp. CCGE 510]
Length = 275
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEEATVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ +E+D R P L +A P + D + + + E
Sbjct: 67 ALGARKVIAVERDTRCLPALAEIADHYPGRLEVIEDDALKTDFEALAPEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I+II NLP+NV T L++ W+
Sbjct: 118 -IKIIANLPYNVGTQLLVNWL 137
>gi|92117868|ref|YP_577597.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14]
gi|119365039|sp|Q1QKW0.1|RSMA_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|91800762|gb|ABE63137.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14]
Length = 287
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+IK + L A K L QNFL + LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLRDVIKRHALSARKSLGQNFLLDLNLTARIARAAGPLEDATVIEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE+D R L+ ++ P + D F + + R
Sbjct: 67 AMGAQRVIAIERDARALGALEEISGRYPGRLTIVNADATQFDSRPLLGTTR--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
+I+ NLP+N++T L+I W+
Sbjct: 118 -AKIVANLPYNIATALLIDWLS 138
>gi|209964862|ref|YP_002297777.1| dimethyladenosine transferase [Rhodospirillum centenum SW]
gi|209958328|gb|ACI98964.1| dimethyladenosine transferase [Rhodospirillum centenum SW]
Length = 276
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 15/167 (8%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITR 67
L +P +RD+I + L A K L Q+FL + LT +IVR AG ++G V EVGPGPG +TR
Sbjct: 4 LSHLPPLRDVIAEHGLGARKALGQHFLLDLNLTRRIVREAGDLSGVAVVEVGPGPGGLTR 63
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
+++ +V +E+D RF L + A+ + D ++ ++ R
Sbjct: 64 ALVESAAREVVAVERDSRFAAALADVMAAADGRLRLVEADALTVDPVDLVPAPR------ 117
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWIQAISE----NLLFPKHKRQLVVS 170
+I NLP+NV TPL+I W++ I+E L+F K + +V+
Sbjct: 118 -----AVISNLPYNVGTPLLIGWLKRIAEYRSLTLMFQKEVAERIVA 159
>gi|15811125|gb|AAL08808.1|AF308662_1 hypothetical dimethyl adenosine transferase [Ehrlichia ruminantium]
Length = 124
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 73/131 (55%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y + K+LSQ F+ +TDKIV AG I+ + E+GPG G++T SIL + P +L+ I
Sbjct: 5 YMINPKKELSQCFIHSTDITDKIVNYAGNISNFSIIEIGPGLGTMTYSILKKNPKKLISI 64
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
EKD R P D + + F L D + ++N+ P +++I NLP+
Sbjct: 65 EKDSRLLPIHDKIIKEFQGKYEFILSDALDIDLRNI-----------AKPPVKVIANLPY 113
Query: 141 NVSTPLIIKWI 151
+++T L+IKWI
Sbjct: 114 SIATLLLIKWI 124
>gi|359397687|ref|ZP_09190713.1| dimethyladenosine transferase [Novosphingobium pentaromativorans
US6-1]
gi|357600878|gb|EHJ62571.1| dimethyladenosine transferase [Novosphingobium pentaromativorans
US6-1]
Length = 280
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
M +A + +P +R++I + L A K L QNFLF+ +L D+I G + G+ V EVGP
Sbjct: 1 MCGEARGMTTLPPLREVIARHGLSASKALGQNFLFDEQLLDRIAAIPGALEGHNVLEVGP 60
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120
GPG +TR++L R A++ IE D R P L + QA P + GD M ++F
Sbjct: 61 GPGGLTRALL-RAGAQVTAIEMDRRCLPALAEVEQAFPDKLKVIEGDAMKIAPASLFDGP 119
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153
++ NLP+NV T L W+
Sbjct: 120 -----------YHVVANLPYNVGTALFTGWLSG 141
>gi|254473433|ref|ZP_05086830.1| dimethyladenosine transferase [Pseudovibrio sp. JE062]
gi|211957549|gb|EEA92752.1| dimethyladenosine transferase [Pseudovibrio sp. JE062]
Length = 279
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 18/167 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFL + LT +I R+AG ++ V EVGPGPG +TR++L
Sbjct: 7 LPPLREVIAEHGLDARKSLGQNFLLDLNLTSRIARSAGDLSDCTVVEVGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IEKD R P L +++ + GD + + + ++G
Sbjct: 67 AAGAKKVIAIEKDTRCLPALAQISEHYNGKLEVIEGDALKYNPAEL---------ADG-- 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
I+II NLP+NV T L++ W+ S L+F K Q +V+
Sbjct: 116 PIKIIANLPYNVGTQLLLGWLTTEEWPPFWSSLTLMFQKEVGQRIVA 162
>gi|421600180|ref|ZP_16043238.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bradyrhizobium sp. CCGE-LA001]
gi|404267711|gb|EJZ32333.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bradyrhizobium sp. CCGE-LA001]
Length = 285
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT +I R A + + E+GPGPG +TR++L
Sbjct: 7 LPPLREVIRQHALSARKSLGQNFLLDLNLTARIARAAAPLEDCTIVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE D R P L ++ P + GD M+F + + +R
Sbjct: 67 ALGARRVIAIEHDERAIPALQDISARYPDRLEIVHGDAMTFDPRPLLDGER--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+I+ NLP+N++T L+I W+
Sbjct: 118 -AKIVANLPYNIATQLLINWL 137
>gi|67458648|ref|YP_246272.1| dimethyladenosine transferase [Rickettsia felis URRWXCal2]
gi|67004181|gb|AAY61107.1| Dimethyladenosine transferase [Rickettsia felis URRWXCal2]
Length = 243
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 92/179 (51%), Gaps = 16/179 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI +++ LK+ QNF+F+ L DKIVR + + V E+GPG G +TRSIL
Sbjct: 6 LPSIAKHAASHQINPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ PA L +IE D R P L+ + + P ++ D + + ++ G
Sbjct: 66 QKNPASLTVIETDERCIPLLNEIKEYYP-NLNIIKQDALKINLTDL-----------GYD 113
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
+ II NLP+++ T L+I+W++ E L L ++ER C P + Y +LSV
Sbjct: 114 KVTIISNLPYHIGTELVIRWLK---EARLITNMTLMLQKEVVERICAMPSTKAYGRLSV 169
>gi|118600894|sp|Q4UMV1.2|RSMA_RICFE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
Length = 239
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 92/179 (51%), Gaps = 16/179 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI +++ LK+ QNF+F+ L DKIVR + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAASHQINPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ PA L +IE D R P L+ + + P ++ D + + ++ G
Sbjct: 62 QKNPASLTVIETDERCIPLLNEIKEYYP-NLNIIKQDALKINLTDL-----------GYD 109
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
+ II NLP+++ T L+I+W++ E L L ++ER C P + Y +LSV
Sbjct: 110 KVTIISNLPYHIGTELVIRWLK---EARLITNMTLMLQKEVVERICAMPSTKAYGRLSV 165
>gi|254420085|ref|ZP_05033809.1| dimethyladenosine transferase [Brevundimonas sp. BAL3]
gi|196186262|gb|EDX81238.1| dimethyladenosine transferase [Brevundimonas sp. BAL3]
Length = 269
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 16/164 (9%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PS+R+ + + L A K Q+FL + +T KIVR AG G V EVGPGPG +TR++L
Sbjct: 4 LPSLRETLDAHGLLAKKSFGQHFLLDLNVTRKIVRLAGPFEGRAVIEVGPGPGGLTRALL 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+VL+EKDPRF P L L S + D + ++ S
Sbjct: 64 ESDAGPVVLVEKDPRFIPLLSELDDGS-GRLTIVEADALKVKEADLVSGP---------- 112
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA----ISENLLFPKHKRQLVVS 170
++ NLP+NV T L+IKW+ S L+F K + V +
Sbjct: 113 -AHMVSNLPYNVGTALLIKWLTGPWLPHSLTLMFQKEVAERVAA 155
>gi|338738886|ref|YP_004675848.1| dimethyladenosine transferase [Hyphomicrobium sp. MC1]
gi|337759449|emb|CCB65278.1| dimethyladenosine transferase [Hyphomicrobium sp. MC1]
Length = 290
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 9/142 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R +I+ Y L A K L QNFL + LT KI R AG ++ V E+GPGPG +TR++L
Sbjct: 10 LPPLRTVIERYGLNAKKSLGQNFLLDLNLTRKIARLAGDLSERTVVEIGPGPGGLTRALL 69
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ IE+D R P L ++ + P + H D + + + + P
Sbjct: 70 MEGAKHVIAIERDDRCLPALAEVSASYPGRLDVHPADALDVDCRQLLGDA---------P 120
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
I+ NLP+ V++ L++ W++
Sbjct: 121 SASIVANLPYGVASLLLVNWLE 142
>gi|334141530|ref|YP_004534736.1| dimethyladenosine transferase [Novosphingobium sp. PP1Y]
gi|333939560|emb|CCA92918.1| dimethyladenosine transferase [Novosphingobium sp. PP1Y]
Length = 273
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFLF+ +L D+I G + G+ V EVGPGPG +TR++L
Sbjct: 4 LPPLREVIARHGLSASKALGQNFLFDEQLLDRIAAIPGALEGHNVLEVGPGPGGLTRALL 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R A++ IE D R P L + QA P + GD M ++F
Sbjct: 64 -RAGAQVTAIEMDRRCLPALAEVEQAFPGKLKVIEGDAMKIAPASLFDGP---------- 112
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
I+ NLP+NV T L W+
Sbjct: 113 -YHIVANLPYNVGTALFTGWLSG 134
>gi|374331073|ref|YP_005081257.1| Dimethyladenosine transferase [Pseudovibrio sp. FO-BEG1]
gi|359343861|gb|AEV37235.1| Dimethyladenosine transferase [Pseudovibrio sp. FO-BEG1]
Length = 279
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 18/167 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFL + LT +I R+AG ++ V EVGPGPG +TR++L
Sbjct: 7 LPPLREVIAEHGLDARKSLGQNFLLDLNLTSRIARSAGDLSDCTVIEVGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IEKD R P L +++ + GD + + + ++G
Sbjct: 67 AAGAKKVIAIEKDTRCLPALAQISEHYNGKLEVIEGDALKYNPAEL---------ADG-- 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
I+II NLP+NV T L++ W+ S L+F K Q +V+
Sbjct: 116 PIKIIANLPYNVGTQLLLGWLTTEEWPPFWSSLTLMFQKEVGQRIVA 162
>gi|383312977|ref|YP_005365778.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Candidatus
Rickettsia amblyommii str. GAT-30V]
gi|378931637|gb|AFC70146.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Candidatus Rickettsia amblyommii str. GAT-30V]
Length = 277
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 13/182 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI L+++ LK+ QNF+F+ L +KIVR + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCEKIVRASNLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT---MQNMFSEDRRRDWSE 127
+ P L +IE D R P L+ + P ++ D + + N E + D+
Sbjct: 62 QKNPESLTVIETDERCLPLLNEIKAYYP-NLNIIKQDALKINLTDLSNDIGESKSIDYK- 119
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QL 186
+ II NLP+++ T L+I+W++ E L L ++ER C P + Y +L
Sbjct: 120 ----VTIISNLPYHIGTELVIRWLK---EARLITSMTLMLQKEVVERVCAMPSTKAYGRL 172
Query: 187 SV 188
SV
Sbjct: 173 SV 174
>gi|339017554|ref|ZP_08643705.1| dimethyladenosine transferase [Acetobacter tropicalis NBRC 101654]
gi|338753266|dbj|GAA07009.1| dimethyladenosine transferase [Acetobacter tropicalis NBRC 101654]
Length = 288
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 16/173 (9%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITR 67
P + S+RD+I + L A K L Q+FL +P +T +I AG + G V EVGPGPG +TR
Sbjct: 13 FPALESLRDVISRHGLDARKALGQHFLLDPDITTRIASLAGKLDGRHVVEVGPGPGGLTR 72
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
++L A + +E D R + LA H D ++ + +D R
Sbjct: 73 ALLATPAASVTAVELDTRAVKVITELAT--------HFPDRLTVVEADALKQDLTRL--- 121
Query: 128 GLPGIR-IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKP 179
P R I+ NLP+NV+TPL+I W++ + + + + + ER C P
Sbjct: 122 -CPAPRHIVANLPYNVATPLLIGWLR---QGTAWERLTLMFQLEVAERICALP 170
>gi|23010583|ref|ZP_00051221.1| COG0030: Dimethyladenosine transferase (rRNA methylation)
[Magnetospirillum magnetotacticum MS-1]
Length = 263
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 10/133 (7%)
Query: 29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTP 88
L QNFLF+ LT +I R AG + G V EVGPGPG +TR++L R+V IE+DPR P
Sbjct: 2 LGQNFLFDLNLTGRIARAAGALDGVTVVEVGPGPGGLTRALLAAGAQRVVAIERDPRALP 61
Query: 89 CLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLII 148
L +A P + D + F + + + +RI+ NLP+NV+T L+
Sbjct: 62 ALAEIAAHYPGRLDVIDADAVGFDPRPLVGDGP----------VRIVANLPYNVATVLLT 111
Query: 149 KWIQAISENLLFP 161
W+ A + + ++P
Sbjct: 112 GWLGAETRDEVWP 124
>gi|431805585|ref|YP_007232486.1| Dimethyladenosine transferase [Liberibacter crescens BT-1]
gi|430799560|gb|AGA64231.1| Dimethyladenosine transferase [Liberibacter crescens BT-1]
Length = 278
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 89/182 (48%), Gaps = 20/182 (10%)
Query: 4 KALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPG 63
K L P+ S+R +I L+ L K + QNF+ + LT KI + AG + V E+GPGPG
Sbjct: 2 KMTDLNPLNSLRKVISLHNLNPNKIMGQNFILDLNLTQKIAKAAGPLNNITVLEIGPGPG 61
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMS--FTMQNMFSEDR 121
+TRSIL +++ IEKD +F P L + P + GD + +T+ N +
Sbjct: 62 GLTRSILASGAKKVIAIEKDKQFLPALQEIIGYYPDQLEIIQGDALKTDYTIFNELDDP- 120
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVSLLER 174
IR+I NLP+N+ T L+ WI + S LLF K + +V+
Sbjct: 121 ----------IRVISNLPYNIGTRLLFDWITSPIWPPFWESLTLLFQKEVAKRIVATKNN 170
Query: 175 AC 176
A
Sbjct: 171 AS 172
>gi|302383692|ref|YP_003819515.1| dimethyladenosine transferase [Brevundimonas subvibrioides ATCC
15264]
gi|302194320|gb|ADL01892.1| dimethyladenosine transferase [Brevundimonas subvibrioides ATCC
15264]
Length = 270
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 18/165 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R+ ++ + L A K Q+FL + +T KIVR AG G V EVGPGPG +TR+I+
Sbjct: 4 LPPLRESLEAHGLLAKKSFGQHFLLDLNITRKIVRLAGPFEGRAVIEVGPGPGGLTRAIV 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+VL+EKDPRF P L+ L D ++ + ++ + ++ +
Sbjct: 64 ESDAGPVVLVEKDPRFLPLLNEL-------------DTGDGRLRIIEADALKVVEADLVA 110
Query: 131 G-IRIIGNLPFNVSTPLIIKWIQA----ISENLLFPKHKRQLVVS 170
G ++ NLP+NV TPL+IKW+ + L+F K + +V+
Sbjct: 111 GPAHVVSNLPYNVGTPLLIKWLTGPWIPHAMTLMFQKEVAERIVA 155
>gi|148255223|ref|YP_001239808.1| dimethyladenosine transferase [Bradyrhizobium sp. BTAi1]
gi|166221648|sp|A5EIA8.1|RSMA_BRASB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|146407396|gb|ABQ35902.1| dimethyladenosine transferase [Bradyrhizobium sp. BTAi1]
Length = 286
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 10/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ ++L A K L QNFL + LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIREHQLSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ +E D R P L +A+ P + D +F ++ G
Sbjct: 67 ALGARHVIAVEHDERAIPALQAIAERYPGRLEIVCTDARTFDVRPYL----------GST 116
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
+I+ NLP+N++T L+I W+ A
Sbjct: 117 KAKIVANLPYNIATHLLIGWLSA 139
>gi|319898726|ref|YP_004158819.1| dimethyladenosine transferase [Bartonella clarridgeiae 73]
gi|319402690|emb|CBI76236.1| dimethyladenosine transferase [Bartonella clarridgeiae 73]
Length = 276
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I +KL+A K L QNF+F+ LT KI AG I G + E+GPGPG +TR++L
Sbjct: 6 LPPLRNVINTHKLQANKSLGQNFIFDLNLTTKIAHQAGNIEGKPILEIGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + + P + D + +F +
Sbjct: 66 AKG-AIVTAIERDERCMPALLEIEKHYPQKLKLIFNDALKQDFSKLFEAYPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RII NLP+N+ T L++ W+
Sbjct: 119 --RIIANLPYNIGTQLLLNWL 137
>gi|350273799|ref|YP_004885112.1| dimethyladenosine transferase [Rickettsia japonica YH]
gi|348593012|dbj|BAK96973.1| dimethyladenosine transferase [Rickettsia japonica YH]
Length = 315
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 25/209 (11%)
Query: 2 AAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPG 61
A + P +PSI L+++ LK+ QNF+F+ L DKIVR + + V E+GPG
Sbjct: 7 AFTGMTYPMLPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPG 66
Query: 62 PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC-------PVHFHLGDVMSFTMQ 114
G +TRSIL + P L +IE D R P L+ + + P + +L D+ T+
Sbjct: 67 TGGLTRSILQKNPESLTVIETDERCLPLLNEIKEYYPNLNIIKQDALEINLTDLSYDTVH 126
Query: 115 NM-----------FSEDRRRDWSEGLP---GIRIIGNLPFNVSTPLIIKWIQAISENLLF 160
++ + R D E + II NLP+++ T L+I+W++ E L
Sbjct: 127 SVGFAYKKREAKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLK---EARLI 183
Query: 161 PKHKRQLVVSLLERACVKPILRPY-QLSV 188
L ++ER C P + Y +LSV
Sbjct: 184 TSMTLMLQKEVVERICAIPSTKAYGRLSV 212
>gi|452750760|ref|ZP_21950507.1| Dimethyladenosine transferase [alpha proteobacterium JLT2015]
gi|451961954|gb|EMD84363.1| Dimethyladenosine transferase [alpha proteobacterium JLT2015]
Length = 277
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 19/167 (11%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD I + L A K L QNFL +P L KI R G + G + EVGPGPG +TR++L
Sbjct: 9 LPPLRDTIAAHGLSAKKALGQNFLLDPNLLAKIARIPGDLHGQHLYEVGPGPGGLTRALL 68
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ AR+ +E D R P L LA+ S + GD ++ D +
Sbjct: 69 -KAGARVTAVEMDSRCLPALGELAEISGGNLSVIEGDALTI------------DEPSTIG 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA------ISENLLFPKHKRQLVVSL 171
+ NLP+NV T L+++W++A S L+F + + +V+L
Sbjct: 116 NAHVAANLPYNVGTALLVRWLEAPWLPWWRSLTLMFQREVAERIVAL 162
>gi|15964902|ref|NP_385255.1| dimethyladenosine transferase [Sinorhizobium meliloti 1021]
gi|384528861|ref|YP_005712949.1| ribosomal RNA small subunit methyltransferase A [Sinorhizobium
meliloti BL225C]
gi|384536944|ref|YP_005721029.1| putative dimethyladenosine transferase [Sinorhizobium meliloti
SM11]
gi|433612920|ref|YP_007189718.1| dimethyladenosine transferase [Sinorhizobium meliloti GR4]
gi|27151590|sp|Q92QZ1.1|RSMA_RHIME RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|15074081|emb|CAC45728.1| Putative dimethyladenosine transferase [Sinorhizobium meliloti
1021]
gi|333811037|gb|AEG03706.1| Ribosomal RNA small subunit methyltransferase A [Sinorhizobium
meliloti BL225C]
gi|336033836|gb|AEH79768.1| putative dimethyladenosine transferase [Sinorhizobium meliloti
SM11]
gi|429551110|gb|AGA06119.1| dimethyladenosine transferase [Sinorhizobium meliloti GR4]
Length = 274
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++V IE+D R P L + P + D + + + ++G
Sbjct: 67 ALGAKKVVAIERDSRCLPALAEIGAHYPGRLDIIEDDALKVDFEAL---------ADG-- 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+RII NLP+NV T L++ W+
Sbjct: 116 PVRIIANLPYNVGTQLLVNWL 136
>gi|149201838|ref|ZP_01878812.1| dimethyladenosine transferase [Roseovarius sp. TM1035]
gi|149144886|gb|EDM32915.1| dimethyladenosine transferase [Roseovarius sp. TM1035]
Length = 283
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P + +I + L A K L QNFL + LT KI R AG + +V E+GPGPG +TR +L
Sbjct: 7 LPPLAKVIAAHGLSARKSLGQNFLLDLNLTSKIARQAGDLGDCDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ IEKD R P L +A A+P + D + + P
Sbjct: 67 MEGARHVLAIEKDSRCLPALQEIADAAPGRLTVLNADALDLDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR++ NLP+NV T L+I+W+
Sbjct: 116 PIRVVSNLPYNVGTELLIRWL 136
>gi|294852044|ref|ZP_06792717.1| dimethyladenosine transferase [Brucella sp. NVSL 07-0026]
gi|294820633|gb|EFG37632.1| dimethyladenosine transferase [Brucella sp. NVSL 07-0026]
Length = 276
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L K L QNFLF+ LT KI R AG + V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKITRQAGDLRDQPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R L +A P + +GD + +F E P
Sbjct: 66 AQG-AYVTAIERDDRCLEALAEIAAHYPGRLRIIVGDALEQDFTALFPEG---------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L++ W+
Sbjct: 116 KPRIVANLPYNVGTQLLLNWL 136
>gi|162149099|ref|YP_001603560.1| dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl
5]
gi|209545158|ref|YP_002277387.1| dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl
5]
gi|161787676|emb|CAP57272.1| putative dimethyladenosine transferase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532835|gb|ACI52772.1| dimethyladenosine transferase [Gluconacetobacter diazotrophicus PAl
5]
Length = 275
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 86/171 (50%), Gaps = 24/171 (14%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+RD+I + L A K L Q+FL +P +T +I AG +TG V EVGPGPG +TR++L+
Sbjct: 5 LRDVIARHGLDARKALGQHFLLDPGITARIAALAGDLTGRHVVEVGPGPGGLTRALLDSP 64
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+ +E D R + LA P +H D R+D + P R
Sbjct: 65 AETVTAVEVDARAVAIIAELATLFPGRLHLVEADAT------------RQDLTRLCPAPR 112
Query: 134 -IIGNLPFNVSTPLIIKWIQAISE----NLLFPKHKRQLVVSLLERACVKP 179
++ NLP+NV TPL++ W++ S L+F Q+ V+ ER C P
Sbjct: 113 QVVANLPYNVGTPLLVGWLRQASAWERLTLMF-----QMEVA--ERICAAP 156
>gi|367476229|ref|ZP_09475620.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Bradyrhizobium
sp. ORS 285]
gi|365271382|emb|CCD88088.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Bradyrhizobium
sp. ORS 285]
Length = 286
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ ++L A K L QNFL + LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIREHQLSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ IE D R P L +A P + D +F ++ +
Sbjct: 67 ALGARHVIAIEHDERAIPALQAIAARYPGRLEIVCTDARTFDVRPYLGSTK--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
+I+ NLP+N++T L+I W+ A
Sbjct: 118 -AKIVANLPYNIATHLLIGWLSA 139
>gi|298291091|ref|YP_003693030.1| dimethyladenosine transferase [Starkeya novella DSM 506]
gi|296927602|gb|ADH88411.1| dimethyladenosine transferase [Starkeya novella DSM 506]
Length = 283
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 9/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L ALK L QNFL + LT KI R AG + G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIREHGLSALKSLGQNFLLDLNLTSKIARTAGKLEGLTVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R L +A P + GD ++ + R
Sbjct: 66 ALGTDKVIAIERDRRCIAALAEVAAHYPGRLEVVEGDALAADYAALIPASTRAA------ 119
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
I+ NLP+N++TPL++ W+ +
Sbjct: 120 ---IVANLPYNIATPLLVGWLTS 139
>gi|239831516|ref|ZP_04679845.1| dimethyladenosine transferase [Ochrobactrum intermedium LMG 3301]
gi|239823783|gb|EEQ95351.1| dimethyladenosine transferase [Ochrobactrum intermedium LMG 3301]
Length = 278
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L K L QNFLF+ LT KI R AG++ V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGSLQEQPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R CLD LA+ + H + + +D + +G P
Sbjct: 66 AQG-AYVTAIERDER---CLDALAE-----IEAHYPGRLRIISGDALEQDFSALFPDG-P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L++ W+
Sbjct: 116 KPRIVANLPYNVGTQLLLNWL 136
>gi|456355711|dbj|BAM90156.1| dimethyladenosine transferase [Agromonas oligotrophica S58]
Length = 286
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ ++L A K L QNFL + LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIREHQLSARKALGQNFLLDLNLTARITRAAGPLEDATVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ +E D R P L +A P + D +F ++ G
Sbjct: 67 ALGARHVIAVEHDERAIPALQAIAHRYPGRLEIVCTDARTFDVRPYL----------GAG 116
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
+I+ NLP+N++T L++ W+ A
Sbjct: 117 KAKIVANLPYNIATHLLVGWLSA 139
>gi|240850227|ref|YP_002971620.1| dimethyladenosine transferase [Bartonella grahamii as4aup]
gi|240267350|gb|ACS50938.1| dimethyladenosine transferase [Bartonella grahamii as4aup]
Length = 276
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L+A K L QNFLF+ LT KI +AG I G V E+GPGPG +TR++L
Sbjct: 6 LPPLREVIDICGLQAHKSLGQNFLFDLNLTSKIAHHAGNIEGKPVLEIGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + + P + D + +F +
Sbjct: 66 AKG-AIVTAIERDERCIPALLEIEKHYPKKLKIICNDALKQDFSKLFETSPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RII NLP+N+ T L++ W+
Sbjct: 119 --RIIANLPYNIGTQLLLNWL 137
>gi|319405488|emb|CBI79107.1| dimethyladenosine transferase [Bartonella sp. AR 15-3]
Length = 276
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I YKL+A K L QNF+ LT KI AG I G V E+GPGPG +TR++L
Sbjct: 6 LPPLRNVINKYKLQANKSLGQNFILNLNLTTKIAHQAGNIEGKPVLEIGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + + P + D + +F +
Sbjct: 66 AKG-AIVTAIERDERCMPALLEIKEHYPQKLKLIFNDALKEDFSKLFEAYPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RII NLP+N+ T L++ W+
Sbjct: 119 --RIIANLPYNIGTQLLLNWL 137
>gi|17987550|ref|NP_540184.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
gi|260563727|ref|ZP_05834213.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
gi|265990793|ref|ZP_06103350.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str.
Rev.1]
gi|27151583|sp|Q8YG94.1|RSMA_BRUME RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|17983253|gb|AAL52448.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
gi|260153743|gb|EEW88835.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str. 16M]
gi|263001577|gb|EEZ14152.1| dimethyladenosine transferase [Brucella melitensis bv. 1 str.
Rev.1]
Length = 276
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L K L QNFLF+ LT KI R AG + V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R L +A P + GD + +F E P
Sbjct: 66 AQG-AYVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEG---------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L++ W+
Sbjct: 116 KPRIVANLPYNVGTQLLLNWL 136
>gi|62289644|ref|YP_221437.1| dimethyladenosine transferase [Brucella abortus bv. 1 str. 9-941]
gi|81309439|sp|Q57E58.1|RSMA_BRUAB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|62195776|gb|AAX74076.1| KsgA, dimethyladenosine transferase [Brucella abortus bv. 1 str.
9-941]
Length = 276
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L K L QNFLF+ LT KI R AG + V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R L +A P + GD + +F E P
Sbjct: 66 AQG-AYVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEG---------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L++ W+
Sbjct: 116 KPRIVANLPYNVGTQLLLNWL 136
>gi|261324799|ref|ZP_05963996.1| dimethyladenosine transferase [Brucella neotomae 5K33]
gi|261300779|gb|EEY04276.1| dimethyladenosine transferase [Brucella neotomae 5K33]
Length = 276
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L K L QNFLF+ LT KI R AG + V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R L +A P + GD + +F E P
Sbjct: 66 AQG-AYVTAIERDDRCLEALTEIAAHYPGRLRIIAGDALEQDFTALFPEG---------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L++ W+
Sbjct: 116 KPRIVANLPYNVGTQLLLNWL 136
>gi|75675874|ref|YP_318295.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255]
gi|119365042|sp|Q3SRZ8.1|RSMA_NITWN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|74420744|gb|ABA04943.1| dimethyladenosine transferase [Nitrobacter winogradskyi Nb-255]
Length = 287
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+IK + L A K L QNFL + LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLRDVIKRHALSARKSLGQNFLLDLNLTSRIARAAGPLQDATVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ IE+D R L+ ++ P + D F + + R
Sbjct: 67 AVGAKHVIAIERDERALGALEEISDRYPGRLTIINADATDFDPRPLLGTTR--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
+I+ NLP+N++T L+I+W+
Sbjct: 118 -AKIVANLPYNIATALLIRWLS 138
>gi|153009933|ref|YP_001371148.1| dimethyladenosine transferase [Ochrobactrum anthropi ATCC 49188]
gi|166221683|sp|A6X265.1|RSMA_OCHA4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|151561821|gb|ABS15319.1| dimethyladenosine transferase [Ochrobactrum anthropi ATCC 49188]
Length = 278
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L K L QNFLF+ LT KI R AG + V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGNLQDQPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R CLD LA+ + H + + +D + +G P
Sbjct: 66 AQG-AYVTAIERDER---CLDALAE-----IEAHYPGRLRIISGDALEQDFSALFPDG-P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L++ W+
Sbjct: 116 KPRIVANLPYNVGTQLLLNWL 136
>gi|23501569|ref|NP_697696.1| dimethyladenosine transferase [Brucella suis 1330]
gi|82699572|ref|YP_414146.1| dimethyladenosine transferase [Brucella melitensis biovar Abortus
2308]
gi|148560508|ref|YP_001258664.1| dimethyladenosine transferase [Brucella ovis ATCC 25840]
gi|161618651|ref|YP_001592538.1| dimethyladenosine transferase [Brucella canis ATCC 23365]
gi|189023894|ref|YP_001934662.1| dimethyladenosine transferase [Brucella abortus S19]
gi|225627179|ref|ZP_03785217.1| dimethyladenosine transferase [Brucella ceti str. Cudo]
gi|225852202|ref|YP_002732435.1| dimethyladenosine transferase [Brucella melitensis ATCC 23457]
gi|237815135|ref|ZP_04594133.1| dimethyladenosine transferase [Brucella abortus str. 2308 A]
gi|256264290|ref|ZP_05466822.1| dimethyladenosine transferase [Brucella melitensis bv. 2 str. 63/9]
gi|256369117|ref|YP_003106625.1| dimethyladenosine transferase [Brucella microti CCM 4915]
gi|260545604|ref|ZP_05821345.1| dimethyladenosine transferase [Brucella abortus NCTC 8038]
gi|260566739|ref|ZP_05837209.1| dimethyladenosine transferase [Brucella suis bv. 4 str. 40]
gi|260754443|ref|ZP_05866791.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870]
gi|260757662|ref|ZP_05870010.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292]
gi|260761489|ref|ZP_05873832.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59]
gi|260883472|ref|ZP_05895086.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68]
gi|261213689|ref|ZP_05927970.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya]
gi|261218950|ref|ZP_05933231.1| dimethyladenosine transferase [Brucella ceti M13/05/1]
gi|261221882|ref|ZP_05936163.1| dimethyladenosine transferase [Brucella ceti B1/94]
gi|261315104|ref|ZP_05954301.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10]
gi|261317341|ref|ZP_05956538.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94]
gi|261321551|ref|ZP_05960748.1| dimethyladenosine transferase [Brucella ceti M644/93/1]
gi|261752008|ref|ZP_05995717.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513]
gi|261754667|ref|ZP_05998376.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686]
gi|261757895|ref|ZP_06001604.1| dimethyladenosine transferase [Brucella sp. F5/99]
gi|265988379|ref|ZP_06100936.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1]
gi|265994629|ref|ZP_06107186.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str.
Ether]
gi|265997845|ref|ZP_06110402.1| dimethyladenosine transferase [Brucella ceti M490/95/1]
gi|297248052|ref|ZP_06931770.1| dimethyladenosine transferase [Brucella abortus bv. 5 str. B3196]
gi|340790312|ref|YP_004755777.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94]
gi|376273589|ref|YP_005152167.1| dimethyladenosine transferase [Brucella abortus A13334]
gi|376274570|ref|YP_005115009.1| dimethyladenosine transferase [Brucella canis HSK A52141]
gi|376280362|ref|YP_005154368.1| dimethyladenosine transferase [Brucella suis VBI22]
gi|384211062|ref|YP_005600144.1| dimethyladenosine transferase [Brucella melitensis M5-90]
gi|384224356|ref|YP_005615520.1| dimethyladenosine transferase [Brucella suis 1330]
gi|384408154|ref|YP_005596775.1| SAM (and some other nucleotide) binding motif protein [Brucella
melitensis M28]
gi|384444768|ref|YP_005603487.1| dimethyladenosine transferase [Brucella melitensis NI]
gi|423167182|ref|ZP_17153885.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI435a]
gi|423170442|ref|ZP_17157117.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI474]
gi|423173477|ref|ZP_17160148.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI486]
gi|423177237|ref|ZP_17163883.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI488]
gi|423179873|ref|ZP_17166514.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI010]
gi|423183005|ref|ZP_17169642.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI016]
gi|423186053|ref|ZP_17172667.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI021]
gi|423189193|ref|ZP_17175803.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI259]
gi|33516941|sp|Q8G1N0.1|RSMA_BRUSU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|122064285|sp|Q2YN15.1|RSMA_BRUA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|166221650|sp|A5VPL7.1|RSMA_BRUO2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|189028802|sp|A9MA55.1|RSMA_BRUC2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226729760|sp|B2S4U1.1|RSMA_BRUA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|254807862|sp|C0RI23.1|RSMA_BRUMB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|23347481|gb|AAN29611.1| dimethyladenosine transferase [Brucella suis 1330]
gi|82615673|emb|CAJ10660.1| SAM (and some other nucleotide) binding motif:Ribosomal RNA adenine
dimethylase [Brucella melitensis biovar Abortus 2308]
gi|148371765|gb|ABQ61744.1| dimethyladenosine transferase [Brucella ovis ATCC 25840]
gi|161335462|gb|ABX61767.1| dimethyladenosine transferase [Brucella canis ATCC 23365]
gi|189019466|gb|ACD72188.1| SAM (and some other nucleotide) binding motif [Brucella abortus
S19]
gi|225618014|gb|EEH15058.1| dimethyladenosine transferase [Brucella ceti str. Cudo]
gi|225640567|gb|ACO00481.1| dimethyladenosine transferase [Brucella melitensis ATCC 23457]
gi|237789972|gb|EEP64182.1| dimethyladenosine transferase [Brucella abortus str. 2308 A]
gi|255999277|gb|ACU47676.1| dimethyladenosine transferase [Brucella microti CCM 4915]
gi|260097011|gb|EEW80886.1| dimethyladenosine transferase [Brucella abortus NCTC 8038]
gi|260156257|gb|EEW91337.1| dimethyladenosine transferase [Brucella suis bv. 4 str. 40]
gi|260667980|gb|EEX54920.1| dimethyladenosine transferase [Brucella abortus bv. 4 str. 292]
gi|260671921|gb|EEX58742.1| dimethyladenosine transferase [Brucella abortus bv. 2 str. 86/8/59]
gi|260674551|gb|EEX61372.1| dimethyladenosine transferase [Brucella abortus bv. 6 str. 870]
gi|260873000|gb|EEX80069.1| dimethyladenosine transferase [Brucella abortus bv. 9 str. C68]
gi|260915296|gb|EEX82157.1| dimethyladenosine transferase [Brucella abortus bv. 3 str. Tulya]
gi|260920466|gb|EEX87119.1| dimethyladenosine transferase [Brucella ceti B1/94]
gi|260924039|gb|EEX90607.1| dimethyladenosine transferase [Brucella ceti M13/05/1]
gi|261294241|gb|EEX97737.1| dimethyladenosine transferase [Brucella ceti M644/93/1]
gi|261296564|gb|EEY00061.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94]
gi|261304130|gb|EEY07627.1| dimethyladenosine transferase [Brucella pinnipedialis M163/99/10]
gi|261737879|gb|EEY25875.1| dimethyladenosine transferase [Brucella sp. F5/99]
gi|261741761|gb|EEY29687.1| dimethyladenosine transferase [Brucella suis bv. 5 str. 513]
gi|261744420|gb|EEY32346.1| dimethyladenosine transferase [Brucella suis bv. 3 str. 686]
gi|262552313|gb|EEZ08303.1| dimethyladenosine transferase [Brucella ceti M490/95/1]
gi|262765742|gb|EEZ11531.1| dimethyladenosine transferase [Brucella melitensis bv. 3 str.
Ether]
gi|263094550|gb|EEZ18359.1| dimethyladenosine transferase [Brucella melitensis bv. 2 str. 63/9]
gi|264660576|gb|EEZ30837.1| dimethyladenosine transferase [Brucella pinnipedialis M292/94/1]
gi|297175221|gb|EFH34568.1| dimethyladenosine transferase [Brucella abortus bv. 5 str. B3196]
gi|326408701|gb|ADZ65766.1| SAM (and some other nucleotide) binding motif protein [Brucella
melitensis M28]
gi|326538425|gb|ADZ86640.1| dimethyladenosine transferase [Brucella melitensis M5-90]
gi|340558771|gb|AEK54009.1| dimethyladenosine transferase [Brucella pinnipedialis B2/94]
gi|343382536|gb|AEM18028.1| dimethyladenosine transferase [Brucella suis 1330]
gi|349742764|gb|AEQ08307.1| dimethyladenosine transferase [Brucella melitensis NI]
gi|358257961|gb|AEU05696.1| dimethyladenosine transferase [Brucella suis VBI22]
gi|363401195|gb|AEW18165.1| dimethyladenosine transferase [Brucella abortus A13334]
gi|363403137|gb|AEW13432.1| dimethyladenosine transferase [Brucella canis HSK A52141]
gi|374540490|gb|EHR11990.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI474]
gi|374542070|gb|EHR13560.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI435a]
gi|374542806|gb|EHR14293.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI486]
gi|374549718|gb|EHR21160.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI010]
gi|374550237|gb|EHR21676.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI016]
gi|374550521|gb|EHR21957.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI488]
gi|374558851|gb|EHR30244.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI259]
gi|374559441|gb|EHR30829.1| ribosomal RNA small subunit methyltransferase A [Brucella abortus
bv. 1 str. NI021]
Length = 276
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L K L QNFLF+ LT KI R AG + V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R L +A P + GD + +F E P
Sbjct: 66 AQG-AYVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEG---------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L++ W+
Sbjct: 116 KPRIVANLPYNVGTQLLLNWL 136
>gi|260752282|ref|YP_003225175.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258551645|gb|ACV74591.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 278
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 12/140 (8%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R +I + L A K+L QNFL + +L D+I R G +T V EVGPGPG +TR++L +
Sbjct: 9 LRAVIARHGLSADKRLGQNFLLDSQLLDRIARVPGDLTQKTVYEVGPGPGGLTRALL-KA 67
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A++ +E+D R P L L+ P + GD M + E +
Sbjct: 68 GAKVTAVERDRRCLPALAELSAHFPDQLQVISGDAMEIDEAAVLGEH-----------VH 116
Query: 134 IIGNLPFNVSTPLIIKWIQA 153
I+ NLP+NV T L+I+W+ A
Sbjct: 117 IVANLPYNVGTALLIRWLTA 136
>gi|265983803|ref|ZP_06096538.1| dimethyladenosine transferase [Brucella sp. 83/13]
gi|306838740|ref|ZP_07471574.1| dimethyladenosine transferase [Brucella sp. NF 2653]
gi|264662395|gb|EEZ32656.1| dimethyladenosine transferase [Brucella sp. 83/13]
gi|306406142|gb|EFM62387.1| dimethyladenosine transferase [Brucella sp. NF 2653]
Length = 276
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L K L QNFLF+ LT KI R AG + V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R L +A P + GD + +F E P
Sbjct: 66 AQG-AYVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEG---------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L++ W+
Sbjct: 116 KPRIVANLPYNVGTQLLLNWL 136
>gi|451940497|ref|YP_007461135.1| dimethyladenosine transferase [Bartonella australis Aust/NH1]
gi|451899884|gb|AGF74347.1| dimethyladenosine transferase [Bartonella australis Aust/NH1]
Length = 277
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 77/146 (52%), Gaps = 9/146 (6%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
+++ +P +R++I Y L+A K L QNFLF+ LT KI AG I G V EVGPGPG +
Sbjct: 1 MQIDNLPPLREVINKYGLQANKSLGQNFLFDLNLTSKIAHQAGNINGKPVIEVGPGPGGL 60
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TR++L R A + IE D R CL L V H ++ + +D +
Sbjct: 61 TRALL-VRGAIVTAIEYDER---CLSAL-----LDVKKHYPKQLTLICNDALKQDFSELF 111
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWI 151
RII NLP+N+ T L++ W+
Sbjct: 112 KTYTEKPRIIANLPYNIGTQLLLNWL 137
>gi|397675927|ref|YP_006517465.1| ribosomal RNA small subunit methyltransferase A [Zymomonas mobilis
subsp. mobilis ATCC 29191]
gi|395396616|gb|AFN55943.1| Ribosomal RNA small subunit methyltransferase A [Zymomonas mobilis
subsp. mobilis ATCC 29191]
Length = 278
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 12/140 (8%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R +I + L A K+L QNFL + +L D+I R G +T V EVGPGPG +TR++L +
Sbjct: 9 LRAVIARHGLSADKRLGQNFLLDSQLLDRIARVPGDLTQKAVYEVGPGPGGLTRALL-KA 67
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A++ +E+D R P L L+ P + GD M + E +
Sbjct: 68 GAKVTAVERDRRCLPALAELSAHFPDQLQVISGDAMEIDEAAVLGEH-----------VH 116
Query: 134 IIGNLPFNVSTPLIIKWIQA 153
I+ NLP+NV T L+I+W+ A
Sbjct: 117 IVANLPYNVGTALLIRWLTA 136
>gi|56552210|ref|YP_163049.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
ZM4]
gi|384410979|ref|YP_005620344.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|62900473|sp|Q5NMX2.1|RSMA_ZYMMO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|56543784|gb|AAV89938.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
ZM4]
gi|335931353|gb|AEH61893.1| dimethyladenosine transferase [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 278
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 12/140 (8%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R +I + L A K+L QNFL + +L D+I R G +T V EVGPGPG +TR++L +
Sbjct: 9 LRAVIARHGLSADKRLGQNFLLDSQLLDRIARVPGDLTQKTVYEVGPGPGGLTRALL-KA 67
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A++ +E+D R P L L+ P + GD M + E +
Sbjct: 68 GAKVTAVERDRRCLPALAELSAHFPDQLQVISGDAMEIDEAAVLGEH-----------VH 116
Query: 134 IIGNLPFNVSTPLIIKWIQA 153
I+ NLP+NV T L+I+W+ A
Sbjct: 117 IVANLPYNVGTALLIRWLTA 136
>gi|306845283|ref|ZP_07477859.1| dimethyladenosine transferase [Brucella inopinata BO1]
gi|306274442|gb|EFM56249.1| dimethyladenosine transferase [Brucella inopinata BO1]
Length = 276
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L K L QNFLF+ LT KI R AG + V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R L +A P + GD + +F E P
Sbjct: 66 AQG-AYVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEG---------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L++ W+
Sbjct: 116 KPRIVANLPYNVGTQLLLNWL 136
>gi|163842952|ref|YP_001627356.1| dimethyladenosine transferase [Brucella suis ATCC 23445]
gi|189028803|sp|B0CL06.1|RSMA_BRUSI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|163673675|gb|ABY37786.1| dimethyladenosine transferase [Brucella suis ATCC 23445]
Length = 276
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L K L QNFLF+ LT KI R AG + V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R L +A P + GD + +F E P
Sbjct: 66 AQG-AYVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEG---------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L++ W+
Sbjct: 116 KPRIVANLPYNVGTQLLLNWL 136
>gi|349699303|ref|ZP_08900932.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Gluconacetobacter europaeus LMG 18494]
Length = 283
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R+ I + L A K L Q+FL +P +T +I AG + G V EVGPGPG +TR++L+
Sbjct: 13 LRETIARHGLDARKALGQHFLLDPAITARIAALAGDLAGQHVVEVGPGPGGLTRALLDTD 72
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+V +E D R + LA +P + D M + + R +
Sbjct: 73 ATSIVAVEVDTRAVAVITELAALAPGRLRIIEADAMRCDLTTLCPAPR-----------Q 121
Query: 134 IIGNLPFNVSTPLIIKWI-QAISENLLFPKHKRQLVVSLLERACVKP 179
II NLP+NV TPL++ W+ QA + + L ++++ ER C P
Sbjct: 122 IIANLPYNVGTPLLVGWLRQAAAWSRLTLMFQQEVA----ERICAAP 164
>gi|359790140|ref|ZP_09293051.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Mesorhizobium alhagi CCNWXJ12-2]
gi|359253934|gb|EHK57005.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Mesorhizobium alhagi CCNWXJ12-2]
Length = 275
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R +I+ + L+A K L QNFL + LT K+ R AG ++ V EVGPGPG +TR++L
Sbjct: 7 LPPLRQVIERHGLQAKKSLGQNFLLDLNLTGKVARAAGDLSQATVIEVGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE+D R L +A P + GD + + +
Sbjct: 67 MNGAVRVIAIERDERCLAALAEVAAHYPGRLETISGDALKTDFAAIAGDGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++I+ NLP+N+ T L+++W+
Sbjct: 118 -VKIVANLPYNIGTELLVRWL 137
>gi|15892945|ref|NP_360659.1| dimethyladenosine transferase [Rickettsia conorii str. Malish 7]
gi|15620139|gb|AAL03560.1| dimethyladenosine transferase [Rickettsia conorii str. Malish 7]
Length = 315
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 27/210 (12%)
Query: 2 AAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPG 61
A + P +PSI L+++ LK+ QNF+F+ L DKIVR + + V E+GPG
Sbjct: 7 AFTGMTYPMLPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPG 66
Query: 62 PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC-------PVHFHLGDVMSFTMQ 114
G +TRSIL + P L +IE D R P L+ + + P + +L D +S+ +
Sbjct: 67 TGGLTRSILQKNPESLTVIETDARCLPLLNEIKEYYPNLNIIKQDALKINLTD-LSYDIV 125
Query: 115 NM------------FSEDRRRDWSEGLP---GIRIIGNLPFNVSTPLIIKWIQAISENLL 159
N + R D E + II NLP+++ T L+I+W++ E L
Sbjct: 126 NSVGFAYKKREVKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLK---EARL 182
Query: 160 FPKHKRQLVVSLLERACVKPILRPY-QLSV 188
L ++ER C P + Y +LSV
Sbjct: 183 ITSMTLMLQKEVVERICAIPSTKAYGRLSV 212
>gi|306842053|ref|ZP_07474726.1| dimethyladenosine transferase [Brucella sp. BO2]
gi|306287894|gb|EFM59314.1| dimethyladenosine transferase [Brucella sp. BO2]
Length = 276
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L K L QNFLF+ LT KI R AG + V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGDLRDQPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R L +A P + GD + +F E P
Sbjct: 66 AQG-AYVTAIERDDRCLEALAEIAAHYPGRLRIIAGDALEQDFTALFPEG---------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L++ W+
Sbjct: 116 EPRIVANLPYNVGTQLLLNWL 136
>gi|146340299|ref|YP_001205347.1| dimethyladenosine transferase [Bradyrhizobium sp. ORS 278]
gi|166221649|sp|A4YT90.1|RSMA_BRASO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|146193105|emb|CAL77116.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Bradyrhizobium
sp. ORS 278]
Length = 286
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ ++L A K L QNFL + LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIREHQLSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ +E D R P L +A P + D +F ++ +
Sbjct: 67 ALGARHVIAVEHDERAIPALRTIADRYPGRLEIVYTDARTFDVRPYLGSTK--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
+I+ NLP+N++T L+I W+ A
Sbjct: 118 -AKIVANLPYNIATHLLIGWLSA 139
>gi|296282381|ref|ZP_06860379.1| dimethyladenosine transferase [Citromicrobium bathyomarinum JL354]
Length = 274
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 18/167 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFLF+ +L +I G ++G V EVGPGPG +TR++L
Sbjct: 4 LPPLREVIAAHGLSASKALGQNFLFDEQLLARIAAVPGDLSGRNVLEVGPGPGGLTRALL 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R A++ IE D R P L L A P + GD + +F +G P
Sbjct: 64 -RAGAKVTAIEMDRRCLPALAELGDAFPGQLTVIEGDALKIDHDAIF---------DGEP 113
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
I+ NLP+NV T L +W+ S L+F + Q +V+
Sbjct: 114 -YAILSNLPYNVGTALFTRWMGGEAWPPNWTSLTLMFQQEVAQRIVA 159
>gi|68171878|ref|ZP_00545205.1| RRNA 16S rRNA dimethylase [Ehrlichia chaffeensis str. Sapulpa]
gi|88658336|ref|YP_507457.1| dimethyladenosine transferase [Ehrlichia chaffeensis str. Arkansas]
gi|67998701|gb|EAM85426.1| RRNA 16S rRNA dimethylase [Ehrlichia chaffeensis str. Sapulpa]
gi|88599793|gb|ABD45262.1| dimethyladenosine transferase [Ehrlichia chaffeensis str. Arkansas]
Length = 277
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 15/153 (9%)
Query: 22 KLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIE 81
K+ K+LSQ F+ +TD+IV AG I+ + E+GPG G++T SILN+ P +L+ IE
Sbjct: 20 KINPKKELSQCFISSTHITDQIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKKLISIE 79
Query: 82 KDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN 141
KD R + + + + F L D ++ + RD E P +++I NLP++
Sbjct: 80 KDRRLSTIHEKIVEEFQGKYEFILSDALNIDL---------RDIIE--PPVKVIANLPYH 128
Query: 142 VSTPLIIKWIQAI----SENLLFPKHKRQLVVS 170
++T L+IKW+ I S L+F K +V+
Sbjct: 129 IATTLLIKWMDYINFFTSFTLMFQKEVADRIVA 161
>gi|221234694|ref|YP_002517130.1| dimethyladenosine transferase [Caulobacter crescentus NA1000]
gi|220963866|gb|ACL95222.1| dimethyladenosine transferase [Caulobacter crescentus NA1000]
Length = 281
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 32/203 (15%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
+ L +P +R+ ++ + L A K Q+FL + +T KI R A G+ V EVGPGPG +
Sbjct: 6 MSLADLPPLREALERHDLMARKSFGQHFLLDLNVTRKIARLAQVGEGDTVVEVGPGPGGL 65
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TR++L AR+V IEKD RF P L +A+ + + GD + D
Sbjct: 66 TRALLE-TGARVVAIEKDSRFLPLLAEVAEVAEGRLELVEGDALKV------------DA 112
Query: 126 SEGLPG-IRIIGNLPFNVSTPLIIKWIQA----ISENLLFPKHKRQLVVSLLERACVKPI 180
++ G ++ NLP+NV T L+I W+ +S L+F K +V+
Sbjct: 113 AQAAGGPAHVVSNLPYNVGTQLLINWLTGPFRPLSMTLMFQKEVADRIVA---------- 162
Query: 181 LRPYQLSVQEFGQICLAYRDMCE 203
Q +G++ + + +CE
Sbjct: 163 ----QPGDDAYGRLAVIAQTLCE 181
>gi|118600867|sp|Q2GGH6.2|RSMA_EHRCR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
Length = 263
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 15/153 (9%)
Query: 22 KLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIE 81
K+ K+LSQ F+ +TD+IV AG I+ + E+GPG G++T SILN+ P +L+ IE
Sbjct: 6 KINPKKELSQCFISSTHITDQIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKKLISIE 65
Query: 82 KDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN 141
KD R + + + + F L D ++ + RD E P +++I NLP++
Sbjct: 66 KDRRLSTIHEKIVEEFQGKYEFILSDALNIDL---------RDIIE--PPVKVIANLPYH 114
Query: 142 VSTPLIIKWIQAI----SENLLFPKHKRQLVVS 170
++T L+IKW+ I S L+F K +V+
Sbjct: 115 IATTLLIKWMDYINFFTSFTLMFQKEVADRIVA 147
>gi|402772747|ref|YP_006592284.1| ribosomal RNA small subunit methyltransferase A/ 16S rRNA
dimethyladenosine transferase [Methylocystis sp. SC2]
gi|401774767|emb|CCJ07633.1| Ribosomal RNA small subunit methyltransferase A/ 16S rRNA
dimethyladenosine transferase [Methylocystis sp. SC2]
Length = 318
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 31/173 (17%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R+++ Y L A K L QNFLF+ LT +I R AG + E+GPGPG +TR++L
Sbjct: 5 LPPLREVVARYGLDARKSLGQNFLFDLNLTARIARAAGPFDDTIIVEIGPGPGGLTRALL 64
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF------------S 118
+ AR++ +E+DPR P L+ +A P + GD + + + +
Sbjct: 65 EQG-ARVIAVERDPRCLPALEEIAAHYPGRLTIVEGDALEIDVAALVRTYASVIPNERAA 123
Query: 119 EDR------------------RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153
DR R ++ RI NLP+N++T L+ KWI A
Sbjct: 124 GDRESHEKPDSAVALESRSGLRPAGNDNRASARICANLPYNIATALLTKWIAA 176
>gi|404320777|ref|ZP_10968710.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Ochrobactrum anthropi CTS-325]
Length = 278
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 79/141 (56%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L K L QNFLF+ LT KI R AG + + EVGPGPG +TR++L
Sbjct: 6 LPPLREVIERHDLMPKKSLGQNFLFDLNLTSKIARQAGNLQDQPIIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R CLD LA+ + H + + +D + +G P
Sbjct: 66 AQG-AYVTAIERDER---CLDALAE-----IEAHYPGRLRIISGDALEQDFSALFPDG-P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L++ W+
Sbjct: 116 KPRIVANLPYNVGTQLLLNWL 136
>gi|323135841|ref|ZP_08070924.1| dimethyladenosine transferase [Methylocystis sp. ATCC 49242]
gi|322398932|gb|EFY01451.1| dimethyladenosine transferase [Methylocystis sp. ATCC 49242]
Length = 300
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 25/161 (15%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTI------------------TG 52
+P +RD++ + L A K L QNFLF+ LT +I R AG T
Sbjct: 5 LPPLRDVVARHGLDAKKTLGQNFLFDLNLTARIARAAGPFTHAAEKSSDFSDKSMHDETA 64
Query: 53 NEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112
V E+GPGPG +TR++L + AR++ +E+D R P L +A P + GD +
Sbjct: 65 TTVVEIGPGPGGLTRALLAQG-ARVIAVERDARCLPALAEIAAHYPGRLTVVEGDALEID 123
Query: 113 MQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153
+ R G P RI NLP+NV+T L+ +WI+A
Sbjct: 124 AAELV-----RAHGAGGPA-RICANLPYNVATALLTRWIEA 158
>gi|365878712|ref|ZP_09418174.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Bradyrhizobium
sp. ORS 375]
gi|365293383|emb|CCD90705.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Bradyrhizobium
sp. ORS 375]
Length = 286
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ ++L A K L QNFL + LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIREHQLSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ +E D R P L +A P + D +F ++ G
Sbjct: 67 ALGARHVIAVEHDERAIPALRTIADRYPGRLEIVCTDARTFDVRPYL----------GST 116
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
+I+ NLP+N++T L+I W+ A
Sbjct: 117 KAKIVANLPYNIATHLLIGWLSA 139
>gi|330993925|ref|ZP_08317855.1| Ribosomal RNA small subunit methyltransferase A [Gluconacetobacter
sp. SXCC-1]
gi|329758871|gb|EGG75385.1| Ribosomal RNA small subunit methyltransferase A [Gluconacetobacter
sp. SXCC-1]
Length = 281
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R+ I + L A K L Q+FL +P +T +I AG + G V EVGPGPG +TR++L+
Sbjct: 13 LRETIARHGLDARKALGQHFLLDPGITARIAGLAGDLAGQNVVEVGPGPGGLTRALLDSE 72
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
R+V +E D R + LA + + D M + + R +
Sbjct: 73 AGRVVAVEVDTRAVAIITELASRAGGRLEVIEADAMRLDLTTLCPAPR-----------Q 121
Query: 134 IIGNLPFNVSTPLIIKWI-QAISENLLFPKHKRQLVVSLLERACVKP 179
+I NLP+NV TPL++ W+ QA + L ++++ ER C P
Sbjct: 122 VIANLPYNVGTPLLVGWLRQAAAWTRLTLMFQQEVA----ERICAAP 164
>gi|182677647|ref|YP_001831793.1| dimethyladenosine transferase [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182633530|gb|ACB94304.1| dimethyladenosine transferase [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 297
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 9/142 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R+++ Y L A K L QNFLF+ LT +I R A + E+GPGPG +TR++L
Sbjct: 13 LPPLREVVATYGLAAKKALGQNFLFDLNLTGRIARAADPSKTALIVEIGPGPGGLTRALL 72
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R P L +A P + GD ++ + + + R
Sbjct: 73 AEGAPKVIAIEQDERCLPALAEIAAHYPGRLEVVAGDALTTDLGLLVASYR--------- 123
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
RI NLP+N+ T L+ +WI+
Sbjct: 124 PARICANLPYNIGTALLTRWIE 145
>gi|295689681|ref|YP_003593374.1| dimethyladenosine transferase [Caulobacter segnis ATCC 21756]
gi|295431584|gb|ADG10756.1| dimethyladenosine transferase [Caulobacter segnis ATCC 21756]
Length = 272
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 32/203 (15%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
+ L +P +R+ ++ + L A K Q+FL + +T KI R A G+ V EVGPGPG +
Sbjct: 1 MSLADLPPLREALERHDLMARKSFGQHFLLDLNVTRKIARLAQIGEGDTVVEVGPGPGGL 60
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TR++L AR+V IEKD RF P L +A+ + + GD + D
Sbjct: 61 TRALLETG-ARVVAIEKDSRFLPLLSEVAEVADGRLELVEGDALKV------------DA 107
Query: 126 SEGLPG-IRIIGNLPFNVSTPLIIKWIQA----ISENLLFPKHKRQLVVSLLERACVKPI 180
++ G ++ NLP+NV T L+I W+ +S L+F K +V+
Sbjct: 108 AQAAGGPAHVVSNLPYNVGTQLLINWLTGPFRPLSMTLMFQKEVADRIVA---------- 157
Query: 181 LRPYQLSVQEFGQICLAYRDMCE 203
Q +G++ + + +CE
Sbjct: 158 ----QPDDDAYGRLAVIAQTLCE 176
>gi|379713533|ref|YP_005301871.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
massiliae str. AZT80]
gi|376334179|gb|AFB31411.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia massiliae str. AZT80]
Length = 303
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 27/202 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI L+++ LK+ QNF+F+ L DKIV + + V E+GPGPG +TRSIL
Sbjct: 2 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVHASNLAENSRVLEIGPGPGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASP--------------CPVHFHLGDVMSFTMQNM 116
+ P L +IE D R P L+ + + P + + + + + F + +
Sbjct: 62 QKNPESLTVIETDERCLPLLNEIKECYPNLNIIKQDALKINLTDLSYDIVNSVGFAYKKL 121
Query: 117 FSE--DRRRDWSEGLP-------GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQL 167
++ RR S + + II NLP+++ T L+I+W++ E L L
Sbjct: 122 EAKPITNRRATSNDIGESKSIDYKVTIISNLPYHIGTELVIRWLK---EARLITSMTLML 178
Query: 168 VVSLLERACVKPILRPY-QLSV 188
++ER C P + Y +LSV
Sbjct: 179 QKEVVERICAMPSTKAYGRLSV 200
>gi|395784387|ref|ZP_10464225.1| ribosomal RNA small subunit methyltransferase A [Bartonella
melophagi K-2C]
gi|395423637|gb|EJF89831.1| ribosomal RNA small subunit methyltransferase A [Bartonella
melophagi K-2C]
Length = 276
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I Y L+A K L QNFLF+ LT KI + AG I G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVINTYGLQANKSLGQNFLFDLNLTSKIAQQAGNIAGKPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + +IE+D R L + + P + D + +F +
Sbjct: 66 AKG-AIVTVIERDKRCLQALLDIEKHYPQKLKVICNDALKQNFSKIFEAYPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
II NLP+N+ T L++ WI
Sbjct: 119 --HIIANLPYNIGTQLLLNWI 137
>gi|365890094|ref|ZP_09428693.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Bradyrhizobium
sp. STM 3809]
gi|365334107|emb|CCE01224.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Bradyrhizobium
sp. STM 3809]
Length = 286
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 10/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ ++L A K L QNFL + LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIREHQLSARKALGQNFLLDLNLTARIARAAGPLEDATVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ +E D R P L +A P + D +F ++ G
Sbjct: 67 ALGARHVIAVEHDERAIPALRTIADRYPGRLEIVCTDARTFDVRPYL----------GST 116
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
+I+ NLP+N++T L+I W+ A
Sbjct: 117 KAKIVANLPYNIATHLLIGWLSA 139
>gi|149186122|ref|ZP_01864436.1| dimethyladenosine transferase [Erythrobacter sp. SD-21]
gi|148830153|gb|EDL48590.1| dimethyladenosine transferase [Erythrobacter sp. SD-21]
Length = 273
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 18/167 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFLF+ +L D+I G + G V E+GPGPG +TR++L
Sbjct: 4 LPPLREVIARHGLSASKALGQNFLFDQQLLDRIAALPGALAGRRVLEIGPGPGGLTRALL 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE D R P L L +A P + GD + + G P
Sbjct: 64 -KAGAEVTAIEMDERCLPALAELGEAYPGKLEVIRGDALKLDHDAIMG---------GEP 113
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
I+ NLP+NV T L +W+ S L+F + Q +V+
Sbjct: 114 -YAILSNLPYNVGTALFTRWMGGEAWPPLWTSLTLMFQQEVAQRIVA 159
>gi|338707019|ref|YP_004661220.1| dimethyladenosine transferase [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336293823|gb|AEI36930.1| dimethyladenosine transferase [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
Length = 282
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 12/138 (8%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R +I Y L A K+L QNFL + +L ++I R G + V EVGPGPG +TR++L+
Sbjct: 10 LRAVIARYGLAADKRLGQNFLLDSQLLNRIARVPGDLENTSVYEVGPGPGGLTRALLS-V 68
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A + +E+D R P L+ L+ P + GD M+ + +D I
Sbjct: 69 GAHVTAVERDRRCLPALEELSLLFPEKLQIISGDAMTVDEAQILGKD-----------IH 117
Query: 134 IIGNLPFNVSTPLIIKWI 151
I+ NLP+NV T L+I+W+
Sbjct: 118 IVANLPYNVGTALLIRWL 135
>gi|241068617|ref|XP_002408487.1| ribosomal RNA adenine dimethylase, putative [Ixodes scapularis]
gi|215492475|gb|EEC02116.1| ribosomal RNA adenine dimethylase, putative [Ixodes scapularis]
Length = 278
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI +++ LK+ QNF+F+ L DKIV + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAASHQINPLKKYGQNFIFDSSLCDKIVHASNLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++P L +IE D R P L+ + + P ++ D + + ++ S D
Sbjct: 62 QKKPESLTVIETDERCIPLLNEIKEYYP-NLNIIKQDALKINLTDL-SYDIVNSSKSIDY 119
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
+ II NLP+++ T L+I+W++ E L L ++ER C P + Y +LSV
Sbjct: 120 KVTIISNLPYHIGTELVIRWLK---EARLINNMTLMLQKEVVERICAMPSTKAYGRLSV 175
>gi|254437873|ref|ZP_05051367.1| dimethyladenosine transferase [Octadecabacter antarcticus 307]
gi|198253319|gb|EDY77633.1| dimethyladenosine transferase [Octadecabacter antarcticus 307]
Length = 279
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P+++ +I + L A K L QNFL + LT KI R +G ++V E+GPGPG +TR +L
Sbjct: 6 LPTLKQVIDSHGLAARKSLGQNFLLDLNLTAKIARLSGRNEDHDVLEIGPGPGGLTRGLL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ ++ IEKD R P L + A P + GD + + + P
Sbjct: 66 SEGARHVLAIEKDDRCLPALAEIQSAYPDRLTVLCGDALDINPLDHLT-----------P 114
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR+ NLP+N+ T L+I+W+
Sbjct: 115 PIRVAANLPYNIGTELLIRWL 135
>gi|126728792|ref|ZP_01744607.1| dimethyladenosine transferase [Sagittula stellata E-37]
gi|126710722|gb|EBA09773.1| dimethyladenosine transferase [Sagittula stellata E-37]
Length = 279
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I ++L A K L QNFL + LT +I R G ++ +V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIATHQLSAKKALGQNFLLDLNLTARIARIPGDLSQMDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ R++ IEKD R P L +A A P + GD + P
Sbjct: 67 SGGARRVLAIEKDARCLPALAEIADAYPGRLEVIEGDALQIDPLAHLE-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I I NLP+NV T L+ +W+
Sbjct: 116 PIAICANLPYNVGTELLTRWL 136
>gi|365858076|ref|ZP_09398033.1| dimethyladenosine transferase [Acetobacteraceae bacterium AT-5844]
gi|363714738|gb|EHL98223.1| dimethyladenosine transferase [Acetobacteraceae bacterium AT-5844]
Length = 275
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R+ I + L A K L Q+FL +P + +I A + G V EVGPGPG +TR++L
Sbjct: 4 LPDLRETIARHGLAARKSLGQHFLLDPAVCARIATIAAPLEGRHVLEVGPGPGGLTRALL 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+V +E D R L L+ A P + GD M ++ R
Sbjct: 64 ASPAEHVVAVELDRRAIAALAELSDAFPGRLTVVEGDAMKVDTLSLLPAGPR-------- 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
R++ NLP+NV TPL+I W++ E LF + ER P Y +LSV
Sbjct: 116 --RVVANLPYNVGTPLLIGWLK---EAALFESLTLMFQQEVAERIVAAPDTEAYGRLSV 169
>gi|165933603|ref|YP_001650392.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia rickettsii str. Iowa]
gi|165908690|gb|ABY72986.1| dimethyladenosine transferase [Rickettsia rickettsii str. Iowa]
Length = 315
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 96/209 (45%), Gaps = 25/209 (11%)
Query: 2 AAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPG 61
A ++ P +PSI L+++ L++ QNF+F+ L DKIVR + + V E+GPG
Sbjct: 7 AFTGMKYPMLPSIAKHAALHQVNPLRKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPG 66
Query: 62 PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP------------------CPVHF 103
G +TRSIL + P L +IE D R P L+ + + P C +
Sbjct: 67 TGGLTRSILQKNPESLTVIETDERCLPLLNEIKEYYPNLNIIKQDALKINLTDLSCDIVN 126
Query: 104 HLGDVMSFTMQNMFSEDRRRDWSEGL---PGIRIIGNLPFNVSTPLIIKWIQAISENLLF 160
+G + R D E + II NLP+++ T L+I+W++ E L
Sbjct: 127 SVGFAYKKREAKPITNRRANDIGESKLIDYKVTIISNLPYHIGTELVIRWLK---EARLI 183
Query: 161 PKHKRQLVVSLLERACVKPILRPY-QLSV 188
L ++ER C P + Y +LSV
Sbjct: 184 TSMTLMLQKEVVERICAIPSTKAYGRLSV 212
>gi|414162897|ref|ZP_11419144.1| ribosomal RNA small subunit methyltransferase A [Afipia felis ATCC
53690]
gi|410880677|gb|EKS28517.1| ribosomal RNA small subunit methyltransferase A [Afipia felis ATCC
53690]
Length = 284
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 10/133 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ Y L K L QNFLF+ LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIRKYDLAPRKSLGQNFLFDLNLTARIARAAGPLDDATVIEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ +E+D R P L+ +AQ P + D + F + + +R
Sbjct: 67 ATGAKRVIAVERDDRAIPALEEIAQHYPSRLEIVHDDAIDFDPTAVLNGER--------- 117
Query: 131 GIRIIGNLPFNVS 143
+I+ NLP+N++
Sbjct: 118 -AKIVANLPYNIA 129
>gi|399063934|ref|ZP_10747044.1| dimethyladenosine transferase [Novosphingobium sp. AP12]
gi|398031396|gb|EJL24783.1| dimethyladenosine transferase [Novosphingobium sp. AP12]
Length = 276
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 79/159 (49%), Gaps = 19/159 (11%)
Query: 9 PPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRS 68
P +P +R++I + L A K L QNFL + +L D+I G++ G +V EVGPGPG +TR+
Sbjct: 4 PALPPLREVIARHGLSASKALGQNFLLDEQLLDRIAAIPGSLEGQQVLEVGPGPGGLTRA 63
Query: 69 ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128
+L R A + IE D R P L L +A P + GD + + +F
Sbjct: 64 LL-RAGAVVTAIEMDRRCLPALAELGEAFPGKLRVIEGDALKIDPKTLFDGP-------- 114
Query: 129 LPGIRIIGNLPFNVSTPLIIKWI-------QAISENLLF 160
I NLP+NV T L W+ Q +S L+F
Sbjct: 115 ---YHIASNLPYNVGTALFTGWLSSEAWPPQWLSLTLMF 150
>gi|393718394|ref|ZP_10338321.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sphingomonas echinoides ATCC 14820]
Length = 280
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 12/137 (8%)
Query: 17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPAR 76
+I Y L A K L QNFL + +L +I R G + EV E+GPGPG +TR++L AR
Sbjct: 19 VIARYGLNASKALGQNFLLDAQLLARIARIPGDLNDAEVLEIGPGPGGLTRALLA-AGAR 77
Query: 77 LVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIG 136
+ IE+D R P L L +A P + GD + ++F +G P I
Sbjct: 78 VTAIERDHRCIPALAELGEAFPGKLRVIEGDALEIDAASLF---------DGKP--HIAS 126
Query: 137 NLPFNVSTPLIIKWIQA 153
NLP+N+ T L+++W+ A
Sbjct: 127 NLPYNIGTALLVRWLSA 143
>gi|365896468|ref|ZP_09434541.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Bradyrhizobium
sp. STM 3843]
gi|365422760|emb|CCE07083.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Bradyrhizobium
sp. STM 3843]
Length = 291
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT +I R A + V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIREHSLSARKSLGQNFLLDLNLTARIARAAAPLEDATVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ +E D R P L+M+A+ P + D +F + G
Sbjct: 67 ALGARHVIAVEHDERAIPALEMIAKRYPGRLEIVCTDARTFDPKPYL----------GTT 116
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
+I+ NLP+N++T L++ W+
Sbjct: 117 KAKIVANLPYNIATNLLVGWLS 138
>gi|383482535|ref|YP_005391449.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
montanensis str. OSU 85-930]
gi|378934889|gb|AFC73390.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia montanensis str. OSU 85-930]
Length = 303
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 27/202 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI L+++ LK+ QNF+F+ L DKIVR + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASP--------------CPVHFHLGDVMSFTMQNM 116
+ P L +IE D R P L+ + + P + + + + + F + +
Sbjct: 62 QKNPESLTVIETDERCLPLLNEIKEYYPNLNIIKQDALKINLTDLSYDIVNSVGFAYKTL 121
Query: 117 FSE--DRRRDWSEGLP-------GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQL 167
++ RR S + + II NLP+++ T L+I+W++ E L L
Sbjct: 122 EAKPITNRRATSNDIGESKSIDYKVTIISNLPYHIGTELVIRWLK---EARLITSMTLML 178
Query: 168 VVSLLERACVKPILRPY-QLSV 188
++ER C P + Y +LSV
Sbjct: 179 QKEVVERICTMPSTKAYGRLSV 200
>gi|27151589|sp|Q92GV0.2|RSMA_RICCN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
Length = 301
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 97/201 (48%), Gaps = 27/201 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI L+++ LK+ QNF+F+ L DKIVR + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPC-------PVHFHLGDVMSFTMQNM------- 116
+ P L +IE D R P L+ + + P + +L D +S+ + N
Sbjct: 62 QKNPESLTVIETDARCLPLLNEIKEYYPNLNIIKQDALKINLTD-LSYDIVNSVGFAYKK 120
Query: 117 -----FSEDRRRDWSEGLP---GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLV 168
+ R D E + II NLP+++ T L+I+W++ E L L
Sbjct: 121 REVKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLK---EARLITSMTLMLQ 177
Query: 169 VSLLERACVKPILRPY-QLSV 188
++ER C P + Y +LSV
Sbjct: 178 KEVVERICAIPSTKAYGRLSV 198
>gi|341584210|ref|YP_004764701.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia heilongjiangensis 054]
gi|340808435|gb|AEK75023.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia heilongjiangensis 054]
Length = 301
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 25/200 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI L+++ LK+ QNF+F+ L DKIVR + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPC-------PVHFHLGDVMSFTMQNM------- 116
+ P L +IE D R P L+ + + P + +L D+ T+ +
Sbjct: 62 QKNPESLTVIETDERCLPLLNEIKEYYPNLNIIKQDVLEINLTDLSYDTVHSFGFAYKKR 121
Query: 117 ----FSEDRRRDWSEGLP---GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV 169
+ R D E + II NLP+++ T L+I+W++ E L L
Sbjct: 122 EAKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLK---EARLITSMTLMLQK 178
Query: 170 SLLERACVKPILRPY-QLSV 188
++ER C P + Y +LSV
Sbjct: 179 EVVERICAIPSTKAYGRLSV 198
>gi|260433483|ref|ZP_05787454.1| dimethyladenosine transferase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417311|gb|EEX10570.1| dimethyladenosine transferase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 280
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I ++L A K L QNFL + LT KI R AG +T +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIARHQLSARKSLGQNFLLDLNLTAKIARQAGDLTQCDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++V +EKD R L+ +A A P + GD + + P
Sbjct: 67 AEGARKVVAVEKDTRCIAALEEIAAAYPGRLEIINGDALEIDPLEHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR+ NLP+NV T L+++W+
Sbjct: 116 PIRVAANLPYNVGTELLVRWL 136
>gi|384261514|ref|YP_005416700.1| Dimethyladenosine transferase [Rhodospirillum photometricum DSM
122]
gi|378402614|emb|CCG07730.1| Dimethyladenosine transferase [Rhodospirillum photometricum DSM
122]
Length = 258
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 23/181 (12%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
++ +NFLF+ LT +I R AG + V E+GPGPG +TR++L ++ IE+DPR
Sbjct: 4 RRWGKNFLFDLNLTGRIARAAGALDQGSVIEIGPGPGGLTRALLAHGAREVIAIERDPRC 63
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
L + QA P + GD +S + ++ R RI+ NLP+NV+TPL
Sbjct: 64 LGALAEIDQACPGRLSVIQGDALSVDVAHLGEAPR-----------RIVANLPYNVATPL 112
Query: 147 IIKWIQ-AISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEM 205
++ W++ A + L ++++V +R +P +++G++ + + +C
Sbjct: 113 LLGWLKHATAFECLVLMFQKEVV----DRLAARP-------DTKDYGRLSVITQWLCRVT 161
Query: 206 P 206
P
Sbjct: 162 P 162
>gi|315122190|ref|YP_004062679.1| dimethyladenosine transferase [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495592|gb|ADR52191.1| dimethyladenosine transferase [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 283
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 78/142 (54%), Gaps = 11/142 (7%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
S+++I+ Y + K + QNFLF+ L KI +G++ G E+GPGPG++T+ +L
Sbjct: 9 SLKNILSRYDIVPHKNMGQNFLFDINLLKKIATTSGSLNGVTAIEIGPGPGNLTQILLEL 68
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG- 131
+++++EKDP+F P L+ ++ P + GD + + + +P
Sbjct: 69 GAQKVIVVEKDPQFLPILNNISLQYPNRLEIIQGDALKIDFKEL----------SHIPAP 118
Query: 132 IRIIGNLPFNVSTPLIIKWIQA 153
IRII NLP+N+ T L+ WI +
Sbjct: 119 IRIISNLPYNIGTRLLFNWITS 140
>gi|319408315|emb|CBI81968.1| dimethyladenosine transferase [Bartonella schoenbuchensis R1]
Length = 276
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I Y L+A K L QNFLF+ LT KI + AG I G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVINTYGLQANKSLGQNFLFDLNLTSKIAQQAGNIAGKPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R L + + P + D + +F +
Sbjct: 66 AKG-AIVTAIERDERCLQALLDIEKHYPQKLKVICNDALKQNFSEIFEAYPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
II NLP+N+ T L++ WI
Sbjct: 119 --HIIANLPYNIGTQLLLNWI 137
>gi|383481912|ref|YP_005390827.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia rhipicephali str. 3-7-female6-CWPP]
gi|378934251|gb|AFC72754.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia rhipicephali str. 3-7-female6-CWPP]
Length = 303
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 27/202 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI L+++ LK+ QNF+F+ L DKIVR + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASP--------------CPVHFHLGDVMSFTMQNM 116
+ P L +IE D R P L+ + + P + + + + + F + +
Sbjct: 62 QKNPESLTVIETDERCLPLLNEIKEYYPNLNIIKQDALKINLTDLSYDIVNSVGFAYKKL 121
Query: 117 FSE--DRRRDWSEGLP-------GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQL 167
++ RR S + + II NLP+++ T L+I+W++ E L L
Sbjct: 122 EAKPITNRRATSNDIGESKSIDYKVTIISNLPYHIGTELVIRWLK---EARLITSMTLML 178
Query: 168 VVSLLERACVKPILRPY-QLSV 188
++ER C P + Y +LSV
Sbjct: 179 QKEVVERICAMPSTKAYGRLSV 200
>gi|144897574|emb|CAM74438.1| Ribosomal RNA adenine methylase transferase [Magnetospirillum
gryphiswaldense MSR-1]
Length = 279
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 29/200 (14%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD++ + L A K L Q+FL + LT +I R AG + E+GPGPG +TR++L
Sbjct: 5 LPPLRDVLNAHGLTARKSLGQHFLLDLNLTGRIARAAGNLATGTTIEIGPGPGGLTRALL 64
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ ++ IE+D R + + A P + D + + R
Sbjct: 65 DNDARHVIAIERDDRAIAIQNEIMAAYPGRLEIIAADALEVEAATLGEAPR--------- 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAI----SENLLFPKHKRQLVVSLLERACVKPILRPYQL 186
RI+ NLP+N+ST L++ W++ I S L+F K VV L A P
Sbjct: 116 --RIVANLPYNISTVLLLAWLRRIDAFESLTLMFQKE----VVDRLAAAPRSP------- 162
Query: 187 SVQEFGQICLAYRDMCEEMP 206
++G++ + + +C+ P
Sbjct: 163 ---DYGRLSVITQWLCDVRP 179
>gi|34581355|ref|ZP_00142835.1| dimethyladenosine transferase [Rickettsia sibirica 246]
gi|383484351|ref|YP_005393264.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
parkeri str. Portsmouth]
gi|28262740|gb|EAA26244.1| dimethyladenosine transferase [Rickettsia sibirica 246]
gi|378936705|gb|AFC75205.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia parkeri str. Portsmouth]
Length = 301
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 92/200 (46%), Gaps = 25/200 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI L+++ LK+ QNF+F+ L DKIVR + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASP------------------CPVHFHLGDVMSFT 112
+ P L +IE D R P L+ + + P C + +G
Sbjct: 62 QKNPESLTVIETDERCLPLLNEIKEYYPNLNIIKQDALKINLTDLSCDIVNSVGFAYKKR 121
Query: 113 MQNMFSEDRRRDWSEGLP---GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV 169
+ R D E + II NLP+++ T L+I+W++ E L L
Sbjct: 122 EAKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLK---EARLITSMTLMLQK 178
Query: 170 SLLERACVKPILRPY-QLSV 188
++ER C P + Y +LSV
Sbjct: 179 EVVERICAIPSTKAYGRLSV 198
>gi|238650988|ref|YP_002916844.1| dimethyladenosine transferase [Rickettsia peacockii str. Rustic]
gi|259494257|sp|C4K2J5.1|RSMA_RICPU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|238625086|gb|ACR47792.1| dimethyladenosine transferase [Rickettsia peacockii str. Rustic]
Length = 301
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 92/200 (46%), Gaps = 25/200 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI L+++ LK+ QNF+F+ L DKIVR + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASP------------------CPVHFHLGDVMSFT 112
+ P L +IE D R P L+ + + P C + +G
Sbjct: 62 QKNPESLTVIETDERCLPLLNEIKEYYPNLNIIKQDALKINLTDLSCDIVNSVGFAYKKR 121
Query: 113 MQNMFSEDRRRDWSEGLP---GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV 169
+ R D E + II NLP+++ T L+I+W++ E L L
Sbjct: 122 EAKPITNRRANDIGESKAIDYKVTIISNLPYHIGTELVIRWLK---EARLITSMTLMLQK 178
Query: 170 SLLERACVKPILRPY-QLSV 188
++ER C P + Y +LSV
Sbjct: 179 EVVERICAIPSTKAYGRLSV 198
>gi|374319622|ref|YP_005066121.1| Dimethyladenosine transferase [Rickettsia slovaca 13-B]
gi|383751663|ref|YP_005426764.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
slovaca str. D-CWPP]
gi|360042171|gb|AEV92553.1| Dimethyladenosine transferase [Rickettsia slovaca 13-B]
gi|379774677|gb|AFD20033.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia slovaca str. D-CWPP]
Length = 301
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 92/200 (46%), Gaps = 25/200 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI L+++ LK+ QNF+F+ L DKIVR + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASP------------------CPVHFHLGDVMSFT 112
+ P L +IE D R P L+ + + P C + +G
Sbjct: 62 QKNPESLTVIETDERCLPLLNEIKEYYPNLNIIKQDALKINLTDLSCDIVNSVGFAYKKR 121
Query: 113 MQNMFSEDRRRDWSEGLP---GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV 169
+ R D E + II NLP+++ T L+I+W++ E L L
Sbjct: 122 EAKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLK---EARLITSMTLMLQK 178
Query: 170 SLLERACVKPILRPY-QLSV 188
++ER C P + Y +LSV
Sbjct: 179 EVVERICAIPSTKAYGRLSV 198
>gi|157964820|ref|YP_001499644.1| dimethyladenosine transferase [Rickettsia massiliae MTU5]
gi|157844596|gb|ABV85097.1| Dimethyladenosine transferase [Rickettsia massiliae MTU5]
Length = 332
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 27/202 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI L+++ LK+ QNF+F+ L DKIVR + + V E+GPG G +TRSIL
Sbjct: 31 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 90
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASP--------------CPVHFHLGDVMSFTMQNM 116
+ P L +IE D R P L+ + + P + + + + + F + +
Sbjct: 91 QKNPESLTVIETDERCLPLLNEIKECYPNLNIIKQDALKINLTDLSYDIVNSVGFAYKKL 150
Query: 117 FSE--DRRRDWSEGLP-------GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQL 167
+ RR S + + II NLP+++ T L+I+W++ E L L
Sbjct: 151 EVKPITNRRATSNDIGESKSIDYKVTIISNLPYHIGTELVIRWLK---EARLITSMTLML 207
Query: 168 VVSLLERACVKPILRPY-QLSV 188
++ER C P + Y +LSV
Sbjct: 208 QKEVVERICAMPSTKAYGRLSV 229
>gi|393773415|ref|ZP_10361813.1| dimethyladenosine transferase [Novosphingobium sp. Rr 2-17]
gi|392721295|gb|EIZ78762.1| dimethyladenosine transferase [Novosphingobium sp. Rr 2-17]
Length = 274
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 81/167 (48%), Gaps = 19/167 (11%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFL + +L D+I G++ G +V EVGPGPG +TR++L
Sbjct: 4 LPPLREVIARHGLSATKALGQNFLLDEQLLDRIAAIPGSLEGQDVLEVGPGPGGLTRALL 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R A + IE D R P L L A P + GD + +F
Sbjct: 64 -RAGANVTAIEMDRRCLPALAELEAAFPGKLKVIEGDALKIDPATLFDGP---------- 112
Query: 131 GIRIIGNLPFNVSTPLIIKWI-------QAISENLLFPKHKRQLVVS 170
I+ NLP+NV T L W+ Q S L+F + + +VS
Sbjct: 113 -YHIVSNLPYNVGTVLFTGWLSGETWPPQWASLTLMFQEEVARRIVS 158
>gi|254452280|ref|ZP_05065717.1| dimethyladenosine transferase [Octadecabacter arcticus 238]
gi|198266686|gb|EDY90956.1| dimethyladenosine transferase [Octadecabacter arcticus 238]
Length = 279
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P+++ +I + L A K L QNFL + LT KI R +G +++ E+GPGPG +TR +L
Sbjct: 6 LPTLKQVIDSHGLAARKSLGQNFLLDLNLTAKIARLSGRNEDHDILEIGPGPGGLTRGLL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ IEKD R P L + A P + GD + + + P
Sbjct: 66 AEGARHILAIEKDDRCLPALADIQAAYPDRLTVLCGDALDINPLDHLT-----------P 114
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR+ NLP+N+ T L+++W+
Sbjct: 115 PIRVAANLPYNIGTELLVRWL 135
>gi|379712766|ref|YP_005301105.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
philipii str. 364D]
gi|376329411|gb|AFB26648.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia philipii str. 364D]
Length = 301
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 92/200 (46%), Gaps = 25/200 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI L+++ LK+ QNF+F+ L DKIVR + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASP------------------CPVHFHLGDVMSFT 112
+ P L +IE D R P L+ + + P C + +G
Sbjct: 62 QKNPESLTVIETDERCLPLLNEIKEYYPNLNIIKQDALKINLTDLSCDIVNSVGFAYKKR 121
Query: 113 MQNMFSEDRRRDWSEGL---PGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV 169
+ R D E + II NLP+++ T L+I+W++ E L L
Sbjct: 122 EAKPITNRRANDIGESKLIDYKVTIISNLPYHIGTELVIRWLK---EARLITSMTLMLQK 178
Query: 170 SLLERACVKPILRPY-QLSV 188
++ER C P + Y +LSV
Sbjct: 179 EVVERICAIPSTKAYGRLSV 198
>gi|229587025|ref|YP_002845526.1| dimethyladenosine transferase [Rickettsia africae ESF-5]
gi|259494256|sp|C3PPC3.1|RSMA_RICAE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|228022075|gb|ACP53783.1| Dimethyladenosine transferase [Rickettsia africae ESF-5]
Length = 301
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 25/200 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI L+++ LK+ QNF+F+ L DKIVR + + V E+GPG G +TR+IL
Sbjct: 2 LPSIAKHAALHQVNPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRAIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASP------------------CPVHFHLGDVMSFT 112
+ P L +IE D R P L+ + + P C + +G
Sbjct: 62 QKNPESLTVIETDERCLPLLNEIKEYYPNLNIIKQDALKINLTDLSCDIVNSVGFAYKKR 121
Query: 113 MQNMFSEDRRRDWSEGLP---GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV 169
+ R D E + II NLP+++ T L+I+W++ E L L
Sbjct: 122 EAKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLK---EAQLITSMTLMLQK 178
Query: 170 SLLERACVKPILRPY-QLSV 188
++ER C P + Y +LSV
Sbjct: 179 EVVERICAIPSTKAYGRLSV 198
>gi|383501385|ref|YP_005414744.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
australis str. Cutlack]
gi|378932396|gb|AFC70901.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia australis str. Cutlack]
Length = 273
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 16/179 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI + +++ LK+ QNF+F+ L DKIVR + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHVASHQINPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ P L +IE D R P L+ + + P ++ D + + ++ D+ +
Sbjct: 62 QKNPEFLTVIETDERCIPLLNEIKEYYP-NLNIIKQDALKINLTDL-------DYDK--- 110
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
+ II NLP+++ T L+I+W++ E L L ++ER C + Y +LSV
Sbjct: 111 -VTIISNLPYHIGTELVIRWLK---EARLITDMTLMLQKEVVERICAMSSTKAYGRLSV 165
>gi|315500017|ref|YP_004088820.1| dimethyladenosine transferase [Asticcacaulis excentricus CB 48]
gi|315418029|gb|ADU14669.1| dimethyladenosine transferase [Asticcacaulis excentricus CB 48]
Length = 277
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 74/146 (50%), Gaps = 12/146 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVR----NAGTITGNEVCEVGPGPGSIT 66
+PS+R+ ++ + L A K Q+FL + +T KIVR + G V EVGPGPG +T
Sbjct: 3 LPSLRESLEAHGLMAKKSFGQHFLLDLNVTRKIVRLGQEGGNSFDGQVVIEVGPGPGGLT 62
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
R+ L ++ +EKD RF L L A P D + + +E
Sbjct: 63 RAALESEATYVLAVEKDARFIDLLTELDTAYPGRFGVVEADALKVNEPALLAE------- 115
Query: 127 EGL-PGIRIIGNLPFNVSTPLIIKWI 151
GL P ++ NLP+NV TPL+IKW+
Sbjct: 116 RGLPPQAHLVSNLPYNVGTPLLIKWL 141
>gi|402703182|ref|ZP_10851161.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia helvetica C9P9]
Length = 302
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 28/202 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI +++ LK+ QNF+F+ L DKIVR + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAASHQINPLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM---------FSEDR 121
++P L +IE D R P L+ + + P ++ D + + ++ F+ +
Sbjct: 62 QKKPESLTVIETDERCIPLLNDIKEYYP-NLNIIKQDALKINLTDLSYDIVTSVGFAHKK 120
Query: 122 R-----------RDWSEGLP---GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQL 167
R D E + II NLP+++ T L+I+W++ E L L
Sbjct: 121 RGAKKPNRRATSNDIGESKSIDYKVTIISNLPYHIGTELVIRWLK---EARLITNMTLML 177
Query: 168 VVSLLERACVKPILRPY-QLSV 188
++ER C P + Y +LSV
Sbjct: 178 QKEVVERICAMPSTKAYGRLSV 199
>gi|88608711|ref|YP_506251.1| dimethyladenosine transferase [Neorickettsia sennetsu str.
Miyayama]
gi|119365038|sp|Q2GE45.1|RSMA_NEOSM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|88600880|gb|ABD46348.1| dimethyladenosine transferase [Neorickettsia sennetsu str.
Miyayama]
Length = 262
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 29/185 (15%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
R K L Q+F+++ + DKI+ A ++ G + E+G G G+++ +IL R PA L+ +EKD
Sbjct: 3 RYNKLLGQHFIYDREVLDKIIDAATSVKGKHIFEIGAGSGTLSAAILLREPASLISVEKD 62
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
RF+ L L A + +GD + + ++F +++ + II NLP+N++
Sbjct: 63 KRFSESLSSL-MAQYQNYKYTIGDALLIRLSSLFKQEK----------VTIIANLPYNIA 111
Query: 144 TPLIIKWIQAISE----NLLFPKHKRQLVVSLLERACVKPILRPY-------QLSVQEFG 192
T L++ W+ + + L+F K + +R C +P + Y QL +
Sbjct: 112 THLLLGWMNELEQVREMVLMFQKE-------VADRICAQPKSKNYGALSVLVQLECKAES 164
Query: 193 QICLA 197
Q LA
Sbjct: 165 QFALA 169
>gi|157828876|ref|YP_001495118.1| dimethyladenosine transferase [Rickettsia rickettsii str. 'Sheila
Smith']
gi|378721699|ref|YP_005286586.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
rickettsii str. Colombia]
gi|378723046|ref|YP_005287932.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
rickettsii str. Arizona]
gi|378724400|ref|YP_005289284.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
rickettsii str. Hauke]
gi|379016054|ref|YP_005292289.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
rickettsii str. Brazil]
gi|379018185|ref|YP_005294420.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
rickettsii str. Hino]
gi|379019499|ref|YP_005295733.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
rickettsii str. Hlp#2]
gi|166221698|sp|A8GT85.1|RSMA_RICRS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|157801357|gb|ABV76610.1| dimethyladenosine transferase [Rickettsia rickettsii str. 'Sheila
Smith']
gi|376324578|gb|AFB21818.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia rickettsii str. Brazil]
gi|376326723|gb|AFB23962.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia rickettsii str. Colombia]
gi|376328070|gb|AFB25308.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia rickettsii str. Arizona]
gi|376330751|gb|AFB27987.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia rickettsii str. Hino]
gi|376332079|gb|AFB29313.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia rickettsii str. Hlp#2]
gi|376333415|gb|AFB30648.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia rickettsii str. Hauke]
Length = 301
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 25/200 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI L+++ L++ QNF+F+ L DKIVR + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAALHQVNPLRKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASP------------------CPVHFHLGDVMSFT 112
+ P L +IE D R P L+ + + P C + +G
Sbjct: 62 QKNPESLTVIETDERCLPLLNEIKEYYPNLNIIKQDALKINLTDLSCDIVNSVGFAYKKR 121
Query: 113 MQNMFSEDRRRDWSEGL---PGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV 169
+ R D E + II NLP+++ T L+I+W++ E L L
Sbjct: 122 EAKPITNRRANDIGESKLIDYKVTIISNLPYHIGTELVIRWLK---EARLITSMTLMLQK 178
Query: 170 SLLERACVKPILRPY-QLSV 188
++ER C P + Y +LSV
Sbjct: 179 EVVERICAIPSTKAYGRLSV 198
>gi|341614298|ref|ZP_08701167.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Citromicrobium sp. JLT1363]
Length = 268
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 18/164 (10%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R++I + L A K L QNFLF+ +L ++I G ++ V EVGPGPG +TR++L R
Sbjct: 1 MREVIAAHGLSASKSLGQNFLFDEQLLNRIAAIPGDLSDRNVLEVGPGPGGLTRALL-RA 59
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A++ IE D R P L L A P + GD + +F +G P
Sbjct: 60 GAQVTAIEMDRRCLPALAELGDAFPGRLTVIEGDALKMDHDALF---------DGAP-YA 109
Query: 134 IIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
I+ NLP+NV T L +W+ S L+F + Q +V+
Sbjct: 110 ILSNLPYNVGTALFTRWMGGEAWPPNWTSLTLMFQQEVAQRIVA 153
>gi|359407928|ref|ZP_09200402.1| dimethyladenosine transferase [SAR116 cluster alpha proteobacterium
HIMB100]
gi|356677291|gb|EHI49638.1| dimethyladenosine transferase [SAR116 cluster alpha proteobacterium
HIMB100]
Length = 285
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
R+ +PS+R ++ L A K L QNF+F+ LT +I R A TG+ V E+GPGPG +T
Sbjct: 10 RILTLPSLRTLVNQTALDARKSLGQNFIFDLNLTQRIARTAAPFTGS-VFEIGPGPGGLT 68
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
R++ ++ IEKD R LD L + + + D ++ + W
Sbjct: 69 RALFLEGAREVIAIEKDRRVISFLDHLVKTANGQLTLIEADALNQPI-----------WE 117
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWI 151
G +I+ NLP+N++T L++ W+
Sbjct: 118 MGQAPRKIVANLPYNIATTLLLSWL 142
>gi|15604515|ref|NP_221033.1| dimethyladenosine transferase [Rickettsia prowazekii str. Madrid E]
gi|383488069|ref|YP_005405748.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
prowazekii str. Chernikova]
gi|383488914|ref|YP_005406592.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
prowazekii str. Katsinyian]
gi|383489754|ref|YP_005407431.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
prowazekii str. Dachau]
gi|383499894|ref|YP_005413255.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
prowazekii str. BuV67-CWPP]
gi|386082538|ref|YP_005999116.1| Dimethyladenosine transferase [Rickettsia prowazekii str. Rp22]
gi|6225594|sp|O05952.1|RSMA_RICPR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|2073482|emb|CAA72482.1| dimethyladenosine transferase [Rickettsia prowazekii str. Madrid E]
gi|3861209|emb|CAA15109.1| DIMETHYLADENOSINE TRANSFERASE (ksgA) [Rickettsia prowazekii str.
Madrid E]
gi|292572303|gb|ADE30218.1| Dimethyladenosine transferase [Rickettsia prowazekii str. Rp22]
gi|380760948|gb|AFE49470.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia prowazekii str. Chernikova]
gi|380761793|gb|AFE50314.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia prowazekii str. Katsinyian]
gi|380762640|gb|AFE51160.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia prowazekii str. BuV67-CWPP]
gi|380763477|gb|AFE51996.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia prowazekii str. Dachau]
Length = 268
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 16/179 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI +K+ LK+ QNF+F+ L DKI+R + + + V E+GPG G +TRSIL
Sbjct: 2 LPSIVKHATSHKINPLKKHGQNFIFDSSLCDKIIRASNVLENSNVIEIGPGIGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ P L +IE D R P L+ + + P ++ DV+ + ++ +
Sbjct: 62 QKNPKSLTVIEIDERCIPLLNEIQEYYP-NLNIIKQDVLKINLTDLIYDK---------- 110
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
+ +I NLP+++ T L+I+ ++ + L L ++ER C P + Y +LSV
Sbjct: 111 -VTVISNLPYHIGTELVIRLLKEVK---LITNMTLMLQKEVVERICAIPSTKAYGRLSV 165
>gi|383486660|ref|YP_005404340.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
prowazekii str. GvV257]
gi|383500731|ref|YP_005414091.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
prowazekii str. RpGvF24]
gi|380757025|gb|AFE52262.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia prowazekii str. GvV257]
gi|380758428|gb|AFE53664.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia prowazekii str. RpGvF24]
Length = 268
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 16/179 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI +K+ LK+ QNF+F+ L DKI+R + + + V E+GPG G +TRSIL
Sbjct: 2 LPSIVKHATSHKINPLKKHGQNFIFDSSLCDKIIRASNVLENSNVIEIGPGIGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ P L +IE D R P L+ + + P ++ DV+ + ++ +
Sbjct: 62 QKNPKSLTVIEIDERCIPLLNEIQEYYP-NLNIIKQDVLKINLTDLIYDK---------- 110
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
+ +I NLP+++ T L+I+ ++ + L L ++ER C P + Y +LSV
Sbjct: 111 -VTVISNLPYHIGTELVIRLLKEVK---LITNMTLMLQKEVVERICAIPSTKAYGRLSV 165
>gi|163797528|ref|ZP_02191479.1| 16S rRNA dimethylase [alpha proteobacterium BAL199]
gi|159177277|gb|EDP61836.1| 16S rRNA dimethylase [alpha proteobacterium BAL199]
Length = 283
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 11/145 (7%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
R+ +P +R+ I A K L QNFL + LT +I R AG + E+GPGPG +T
Sbjct: 8 RIAALPPLREAIATANFSAKKSLGQNFLLDINLTRRIARAAGALETGTTIEIGPGPGGLT 67
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
R++L L+ IE+D R L L QA+ + D + ++ + R
Sbjct: 68 RALLIEGAVDLIAIERDSRAAEALAPLVQAAEGRLRLVEDDATEVDVSSLGAAPR----- 122
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWI 151
R++ NLP+NV+T L++ W+
Sbjct: 123 ------RVVANLPYNVATRLLLGWL 141
>gi|357032552|ref|ZP_09094487.1| dimethyladenosine transferase [Gluconobacter morbifer G707]
gi|356413543|gb|EHH67195.1| dimethyladenosine transferase [Gluconobacter morbifer G707]
Length = 273
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 93/179 (51%), Gaps = 24/179 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PS+R+ I+ + L A K L Q+FL +P + +I G + G V E+GPGPG +TR++L
Sbjct: 3 LPSLREAIQAHGLDAKKSLGQHFLLDPGICARIAGLGGNLEGRTVVEIGPGPGGLTRALL 62
Query: 71 NRRPARLV-LIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129
+ PAR + +E D R P L+ LA P ++ D + + R
Sbjct: 63 D-TPARQIDAVEIDERAWPLLEELAAHYPGRLNIIRQDALKLDAAALAPAPR-------- 113
Query: 130 PGIRIIGNLPFNVSTPLIIKWIQAISE----NLLFPKHKRQLVVSLLERACVKPILRPY 184
+II NLP+NV+TPL++ W++ E +L+F QL V+ ER C +P Y
Sbjct: 114 ---QIIANLPYNVATPLLVGWLRQAKEWERLSLMF-----QLEVA--ERICAEPSSSAY 162
>gi|254796737|ref|YP_003081573.1| dimethyladenosine transferase [Neorickettsia risticii str.
Illinois]
gi|254589984|gb|ACT69346.1| dimethyladenosine transferase [Neorickettsia risticii str.
Illinois]
Length = 262
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 88/165 (53%), Gaps = 22/165 (13%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
R K L Q+F+++ + DKI+ ++ G + E+G G G+++ +IL R PA L+ +EKD
Sbjct: 3 RYNKLLGQHFIYDREVLDKIIDTVTSVKGKHIFEIGAGSGTLSAAILLREPASLMSVEKD 62
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
RF+ L L A + +GD + + +++ +++ + II NLP+N++
Sbjct: 63 KRFSESLSSL-MAQYQNYKYTIGDALLIRLSSLYKQEK----------VTIIANLPYNIA 111
Query: 144 TPLIIKWIQAISENLLFPKHKRQLVV----SLLERACVKPILRPY 184
T L++ W+ + +H R++V+ + +R C +P + Y
Sbjct: 112 THLLLGWMNEL-------EHIREMVLMFQKEVADRICAQPKSKSY 149
>gi|56416752|ref|YP_153826.1| dimethyladenosine transferase [Anaplasma marginale str. St. Maries]
gi|222475116|ref|YP_002563532.1| dimethyladenosine transferase [Anaplasma marginale str. Florida]
gi|255003096|ref|ZP_05278060.1| dimethyladenosine transferase [Anaplasma marginale str. Puerto
Rico]
gi|255004222|ref|ZP_05279023.1| dimethyladenosine transferase [Anaplasma marginale str. Virginia]
gi|62900476|sp|Q5PAV9.1|RSMA_ANAMM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|254807856|sp|B9KIG4.1|RSMA_ANAMF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|56387984|gb|AAV86571.1| dimethyladenosine transferase [Anaplasma marginale str. St. Maries]
gi|222419253|gb|ACM49276.1| dimethyladenosine transferase (ksgA) [Anaplasma marginale str.
Florida]
Length = 270
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 15/163 (9%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K L QNF+ +P + +KIV AG+I G + EVGPG G++T IL + A L+ IEKD
Sbjct: 7 KAYKSLGQNFILDPSMAEKIVSYAGSIEGYNIIEVGPGFGTMTEIILRSKVASLLAIEKD 66
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
R +P L Q P + DV+ ++ M S ++I NLP+N+S
Sbjct: 67 RRLSPMHKGLMQKYPNYRYIE-HDVLEINLETMISAPS-----------KMIANLPYNIS 114
Query: 144 TPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQL 186
L+++ ++ I F K + ER KP + Y +
Sbjct: 115 VILLLRMLKYIHN---FEKLTLMFQKEVAERLVAKPGTKSYSI 154
>gi|239947018|ref|ZP_04698771.1| dimethyladenosine transferase [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921294|gb|EER21318.1| dimethyladenosine transferase [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 303
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 98/203 (48%), Gaps = 29/203 (14%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI +++ LK+ QNF+F+ L DKIV + + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAASHQINPLKKYGQNFIFDSSLCDKIVHASNLAENSRVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPC-------PVHFHLGDVMSFTMQN----MFSE 119
++P L +IE D R P L+ + + P + +L D +S+ + N + E
Sbjct: 62 QKKPESLTVIETDERCIPLLNEIKEYYPNLNIIKQDALKINLTD-LSYDIVNSVGFAYKE 120
Query: 120 ------DRRRDWSEGLP-------GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQ 166
RR S + + II NLP+++ T L+I+W++ E L
Sbjct: 121 REAKPITNRRATSNDVGESKSIDYKVTIISNLPYHIGTELVIRWLK---EARLINNMTLM 177
Query: 167 LVVSLLERACVKPILRPY-QLSV 188
L ++ER C P + Y +LSV
Sbjct: 178 LQKEVVERICAMPSTKAYGRLSV 200
>gi|313680695|ref|YP_004058434.1| dimethyladenosine transferase [Oceanithermus profundus DSM 14977]
gi|313153410|gb|ADR37261.1| dimethyladenosine transferase [Oceanithermus profundus DSM 14977]
Length = 273
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 76/141 (53%), Gaps = 17/141 (12%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
++R +++ Y L A ++L QNFL + L D IVR A G EV EVGPG G++TR+ L
Sbjct: 9 TVRALLERYGLAADRRLGQNFLVDAGLLDVIVRTADVRPGQEVWEVGPGLGTLTRA-LAL 67
Query: 73 RPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
AR+ IEKD R P L + LA PV D + DWSE PG
Sbjct: 68 AGARVHAIEKDTRLEPVLRETLAG---LPVELSFADALDC------------DWSEVPPG 112
Query: 132 IRIIGNLPFNVSTPLIIKWIQ 152
+ NLP+NV+TPL+ + ++
Sbjct: 113 SLFVSNLPYNVATPLLSELLR 133
>gi|254294291|ref|YP_003060314.1| dimethyladenosine transferase [Hirschia baltica ATCC 49814]
gi|254042822|gb|ACT59617.1| dimethyladenosine transferase [Hirschia baltica ATCC 49814]
Length = 274
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 19/165 (11%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K L Q+FLF+P + ++ +AG + G V EVGPGPG +T ++L +++ +E D
Sbjct: 10 RANKSLGQHFLFDPDILNRTALSAGPVEGRTVIEVGPGPGGLTAALLRNGAKKVIAVEMD 69
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF-SEDRRRDWSEGLPGIRIIGNLPFNV 142
RF L + + GD +S + ED+ ++II NLP+NV
Sbjct: 70 ARFAENLRSWKEYKEGRLSVIEGDGLSLDYPKLVEGEDKP---------VKIIANLPYNV 120
Query: 143 STPLIIKWIQAIS---ENLLFPKHKRQLVVSLLERACVKPILRPY 184
TP++I WI++ S E L +H+ + R C +P + Y
Sbjct: 121 GTPMLINWIKSGSWRGEMGLMFQHE------VAARVCAQPGEKHY 159
>gi|326405097|ref|YP_004285179.1| ribosomal RNA small subunit methyltransferase A [Acidiphilium
multivorum AIU301]
gi|325051959|dbj|BAJ82297.1| ribosomal RNA small subunit methyltransferase A [Acidiphilium
multivorum AIU301]
Length = 272
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 15/163 (9%)
Query: 12 PSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILN 71
P +R++I + L A + L Q+FL +P L +I R AG + G V EVGPGPG +TR++L
Sbjct: 6 PPLREVIARHGLSAKRALGQHFLLDPDLLARIARLAGPLAGVNVIEVGPGPGGLTRALLA 65
Query: 72 RRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
A + IE DPR + LA A P + GD + + + R
Sbjct: 66 SDAAGVTAIELDPRAVGAVAELAAADPGRLRVVEGDALDLDLAALVPAPR---------- 115
Query: 132 IRIIGNLPFNVSTPLIIKWIQAI----SENLLFPKHKRQLVVS 170
I+ NLP+N T ++++W+ S L+F + + +V+
Sbjct: 116 -AIVANLPYNAGTAMLLRWLHQAACFRSMTLMFQREVAERIVA 157
>gi|304405864|ref|ZP_07387522.1| dimethyladenosine transferase [Paenibacillus curdlanolyticus YK9]
gi|304345107|gb|EFM10943.1| dimethyladenosine transferase [Paenibacillus curdlanolyticus YK9]
Length = 303
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 21/191 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
RDI+K Y K L QNFL + + KIV A E+GPG G++T+ L R
Sbjct: 22 RDIVKKYGFEFKKSLGQNFLIDQNILHKIVAAAELDGTKGALEIGPGIGALTQH-LARSA 80
Query: 75 ARLVLIEKDPRFTPCL-DMLA-QASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
R+ +E D R P L D LA +A+ VH DV+ + +F+E EGL GI
Sbjct: 81 GRVTAVEIDNRLIPILRDTLAGEANVEVVH---ADVLKLNLHELFAER-----FEGLSGI 132
Query: 133 RIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFG 192
++ NLP+ V+TP+++K ++ E L + + +R KP +E+G
Sbjct: 133 SVVANLPYYVTTPILMKLLE---ERLPLEHIVVMIQKEVADRMAAKP-------GGKEYG 182
Query: 193 QICLAYRDMCE 203
+ +A + CE
Sbjct: 183 SLSVAVQYYCE 193
>gi|148261607|ref|YP_001235734.1| dimethyladenosine transferase [Acidiphilium cryptum JF-5]
gi|146403288|gb|ABQ31815.1| dimethyladenosine transferase [Acidiphilium cryptum JF-5]
Length = 272
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 15/163 (9%)
Query: 12 PSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILN 71
P +R++I + L A + L Q+FL +P L +I R AG + G V EVGPGPG +TR++L
Sbjct: 6 PPLREVIARHGLSAKRALGQHFLLDPDLLARIARLAGPLDGVNVIEVGPGPGGLTRALLA 65
Query: 72 RRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
A + IE DPR + LA A P + GD + + + R
Sbjct: 66 SDAAGVTAIELDPRAVGAVAELAAADPGRLRVLEGDALDLDLAALVPAPR---------- 115
Query: 132 IRIIGNLPFNVSTPLIIKWIQAI----SENLLFPKHKRQLVVS 170
I+ NLP+N T ++++W+ S L+F + + +V+
Sbjct: 116 -AIVANLPYNAGTAMLLRWLHQAACFRSMTLMFQREVAERIVA 157
>gi|338983475|ref|ZP_08632665.1| Dimethyladenosine transferase [Acidiphilium sp. PM]
gi|338207606|gb|EGO95553.1| Dimethyladenosine transferase [Acidiphilium sp. PM]
Length = 272
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 15/163 (9%)
Query: 12 PSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILN 71
P +R++I + L A + L Q+FL +P L +I R AG + G V EVGPGPG +TR++L
Sbjct: 6 PPLREVIARHGLSAKRALGQHFLLDPDLLARIARLAGPLDGVNVIEVGPGPGGLTRALLA 65
Query: 72 RRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
A + IE DPR + LA A P + GD + + + R
Sbjct: 66 SDAAGVTAIELDPRAVGAVAELAAADPGRLRVVEGDALDLDLAALVPAPR---------- 115
Query: 132 IRIIGNLPFNVSTPLIIKWIQAI----SENLLFPKHKRQLVVS 170
I+ NLP+N T ++++W+ S L+F + + +V+
Sbjct: 116 -AIVANLPYNAGTAMLLRWLHQAASFRSMTLMFQREVAERIVA 157
>gi|389877710|ref|YP_006371275.1| dimethyladenosine transferase [Tistrella mobilis KA081020-065]
gi|388528494|gb|AFK53691.1| dimethyladenosine transferase [Tistrella mobilis KA081020-065]
Length = 291
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 17/152 (11%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNA---GTITGNEVCEVGPGPGS 64
L +P +RD+I L A K L Q+FL + LT +I + A + G V EVGPGPG
Sbjct: 8 LDALPPLRDVIAAAGLDARKSLGQHFLLDLNLTRRIAKLAEGRDGVAGRTVIEVGPGPGG 67
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHL--GDVMSFTMQNMFSE--D 120
+TR +L AR++ IE+D R L L + CP F + D ++ + E D
Sbjct: 68 LTRGLLAGPAARVIAIERDSRAVQALQPLIEV--CPGRFSIIEADALTIDPGKLLDEVGD 125
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ 152
R W I NLP+N+ST L ++W +
Sbjct: 126 DGRCW--------IASNLPYNISTQLTVQWAE 149
>gi|406990916|gb|EKE10513.1| dimethyladenosine transferase [uncultured bacterium]
Length = 274
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 87/173 (50%), Gaps = 24/173 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
M +R+ I+ LRA K L QNFL +P + +IV +A + + V E+GPGPG +TR I+
Sbjct: 1 MIPLREAIR--ALRAKKSLGQNFLCDPHILQRIVESAAPLENHAVIEIGPGPGGLTREII 58
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
L+LIE+D R P L++L H S Q+ + + G P
Sbjct: 59 KTPCRELILIEQDERCLPFLEVL--------RIHFKGRFSLLNQDALTVSLH---TLGDP 107
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISE----NLLFPKHKRQLVVSLLERACVKP 179
++I NLP+NVS PL+IK ++ + + L+F K + ER KP
Sbjct: 108 PRKVIANLPYNVSVPLLIKMLEYMDDFESLTLMFQK-------EVAERLTAKP 153
>gi|410093045|ref|ZP_11289545.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas viridiflava UASWS0038]
gi|409759578|gb|EKN44789.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas viridiflava UASWS0038]
Length = 268
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 11/139 (7%)
Query: 17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPAR 76
+ +LY+ RA K+ QNFL + + DKI+R + + E+GPG G++T +LN A
Sbjct: 1 MTELYQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLN-SGAH 59
Query: 77 LVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIG 136
L ++E D P L+ P + H GD + F ++ +E R +R++G
Sbjct: 60 LDVVELDKDLIPILNSQFAGKPN-FNLHQGDALKFDFNSLGAEPR---------SLRVVG 109
Query: 137 NLPFNVSTPLIIKWIQAIS 155
NLP+N+STPLI +Q S
Sbjct: 110 NLPYNISTPLIFHLLQNAS 128
>gi|260427332|ref|ZP_05781311.1| dimethyladenosine transferase [Citreicella sp. SE45]
gi|260421824|gb|EEX15075.1| dimethyladenosine transferase [Citreicella sp. SE45]
Length = 257
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L QNFL + LT KI R AG + G +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIATHDLSAKKSLGQNFLLDLNLTAKIARQAGDLAGMDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSEGL 129
R++ IEKD R L +A A P + GD + +Q++
Sbjct: 67 AEGARRVLAIEKDARCLSALAEIAAAYPGRLEVIEGDALQVDPLQHLT------------ 114
Query: 130 PGIRIIGNLPF 140
P I I NLP+
Sbjct: 115 PPIAICANLPY 125
>gi|307213901|gb|EFN89152.1| Dimethyladenosine transferase 1, mitochondrial [Harpegnathos
saltator]
Length = 294
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
Query: 70 LNRRPARLVLIEKDPRFTPCLDMLAQASPC---PVHFHLGDVMSFTMQNMFSEDRRRDWS 126
+ R P R+VL+EKD RF P LD+LA + V D+M ++++F ++++ +W+
Sbjct: 1 MKRLPERIVLVEKDKRFEPTLDILADSFAMINRKVDIIFDDIMRAHIESLFPKEKKMNWN 60
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+ P + +IGNLPFNVSTPLII+W+ +I+E
Sbjct: 61 DKPPDLFLIGNLPFNVSTPLIIQWLHSIAE 90
>gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040075|gb|ACT56871.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 284
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 9/141 (6%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
S++ I+ YK+ K + QNFL + + KI ++G++ G V E+G GPG++T+ +L
Sbjct: 9 SLKTILSHYKIIPKKYMGQNFLLDLNILKKIAESSGSLDGITVIEIGAGPGNLTQMLLTL 68
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
++++IEKD +F P L ++ P + D + + F+ I
Sbjct: 69 GARKVIVIEKDQQFFPILKDISSQHPNRLEIIQDDALKVDFEKFFNIS---------SPI 119
Query: 133 RIIGNLPFNVSTPLIIKWIQA 153
RII NLP+N+ T L+ WI A
Sbjct: 120 RIIANLPYNIGTRLLFNWISA 140
>gi|16125931|ref|NP_420495.1| dimethyladenosine transferase [Caulobacter crescentus CB15]
gi|27151598|sp|Q9A7N5.1|RSMA_CAUCR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|13423097|gb|AAK23663.1| dimethyladenosine transferase [Caulobacter crescentus CB15]
Length = 258
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 32/184 (17%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP 84
A K Q+FL + +T KI R A G+ V EVGPGPG +TR++L AR+V IEKD
Sbjct: 2 ARKSFGQHFLLDLNVTRKIARLAQVGEGDTVVEVGPGPGGLTRALLETG-ARVVAIEKDS 60
Query: 85 RFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLPFNVS 143
RF P L +A+ + + GD + D ++ G ++ NLP+NV
Sbjct: 61 RFLPLLAEVAEVAEGRLELVEGDALKV------------DAAQAAGGPAHVVSNLPYNVG 108
Query: 144 TPLIIKWIQA----ISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYR 199
T L+I W+ +S L+F K +V+ Q +G++ + +
Sbjct: 109 TQLLINWLTGPFRPLSMTLMFQKEVADRIVA--------------QPGDDAYGRLAVIAQ 154
Query: 200 DMCE 203
+CE
Sbjct: 155 TLCE 158
>gi|51473851|ref|YP_067608.1| dimethyladenosine transferase [Rickettsia typhi str. Wilmington]
gi|383752627|ref|YP_005427727.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
typhi str. TH1527]
gi|383843463|ref|YP_005423966.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Rickettsia
typhi str. B9991CWPP]
gi|62900511|sp|Q68W66.1|RSMA_RICTY RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|51460163|gb|AAU04126.1| dimethyladenosine transferase [Rickettsia typhi str. Wilmington]
gi|380759270|gb|AFE54505.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia typhi str. TH1527]
gi|380760110|gb|AFE55344.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Rickettsia typhi str. B9991CWPP]
Length = 268
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 16/179 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI +++ LK+ QNF+F+ L DKI+R + ++V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAASHQINPLKKHGQNFIFDSSLCDKIIRASNISENSKVIEIGPGVGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ P L +IE D R P L+ + P ++ DV+ + ++ +
Sbjct: 62 HKNPKSLTVIEIDERCIPLLNEIQGYYP-NLNIIKQDVLKINLTDLIYDK---------- 110
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
+ +I NLP+++ T L+I+ ++ E L L ++ER C P + Y +LSV
Sbjct: 111 -VTVISNLPYHIGTELVIRLLK---EAKLITNMILMLQKEVVERICAMPSTKAYGRLSV 165
>gi|389680946|ref|ZP_10172292.1| dimethyladenosine transferase [Pseudomonas chlororaphis O6]
gi|388555235|gb|EIM18482.1| dimethyladenosine transferase [Pseudomonas chlororaphis O6]
Length = 272
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 13/136 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ +G+ + E+GPG G++T +LN A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSINAKSGDRMLEIGPGQGALTEGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L+ A H GD + F ++ PG +R++GNLP
Sbjct: 64 ELDKDLVPILNQ-QFAGRDNFSLHQGDALKFDFNSL----------NAAPGSLRVVGNLP 112
Query: 140 FNVSTPLIIKWIQAIS 155
+N+STPLI +Q S
Sbjct: 113 YNISTPLIFHLLQNAS 128
>gi|297566999|ref|YP_003685971.1| dimethyladenosine transferase [Meiothermus silvanus DSM 9946]
gi|296851448|gb|ADH64463.1| dimethyladenosine transferase [Meiothermus silvanus DSM 9946]
Length = 276
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 28/185 (15%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
++R++++ Y LRA K+ QNFL E +IV G G V EVGPG G++TR+ L
Sbjct: 15 AVRELLERYGLRADKRFGQNFLVEAGYLQRIVAAVGFKPGERVYEVGPGLGTLTRA-LAE 73
Query: 73 RPARLVLIEKDPRFTPC-LDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
A++ +E D R P + LA PV GD + F DW PG
Sbjct: 74 AGAKVTAVEMDRRLEPVHAETLAH---LPVEVIWGDALEF------------DWRSIPPG 118
Query: 132 IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEF 191
GNLP+N++TPLI K LL + R +VV + + ++ + P E+
Sbjct: 119 SLFAGNLPYNIATPLITK--------LLLSRRFRCIVVLVQKEVALRMVAAP---GTPEY 167
Query: 192 GQICL 196
G + L
Sbjct: 168 GVLSL 172
>gi|237803359|ref|ZP_04590944.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. oryzae str. 1_6]
gi|331025340|gb|EGI05396.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. oryzae str. 1_6]
Length = 268
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +LN A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRAKSEERLLEIGPGQGALTEGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ P H GD + F ++ +E R +R++GNLP+
Sbjct: 64 ELDKDLIPTLNSQFAGKPN-FSLHQGDALKFDFNSLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|269958833|ref|YP_003328621.1| dimethyladenosine transferase [Anaplasma centrale str. Israel]
gi|269848663|gb|ACZ49307.1| dimethyladenosine transferase [Anaplasma centrale str. Israel]
Length = 270
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 27/171 (15%)
Query: 22 KLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIE 81
K +A K L QNF+ +P + ++IV AG+I G + EVGPG G++T IL + A L+ IE
Sbjct: 5 KHKAYKSLGQNFILDPAIAEEIVSYAGSIEGYNIIEVGPGFGTMTEIILRSKVASLLAIE 64
Query: 82 KDPRFTPCLDMLAQASPCPVHFHL--GDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
KD R +P + L + P H+ DV+ ++ + + ++I NLP
Sbjct: 65 KDCRLSPTHESLMKQHP---HYRYIEHDVLDINLEELIAAPS-----------KMIANLP 110
Query: 140 FNVSTPLIIKWIQAISE----NLLFPKHKRQLVVSLLERACVKPILRPYQL 186
+N+S L+++ ++ I L+F K + ER KP + Y +
Sbjct: 111 YNISVILLLRMLKYIHNFERLTLMFQK-------EVAERLVAKPGTKSYSI 154
>gi|304320043|ref|YP_003853686.1| dimethyladenosine transferase [Parvularcula bermudensis HTCC2503]
gi|303298946|gb|ADM08545.1| dimethyladenosine transferase [Parvularcula bermudensis HTCC2503]
Length = 273
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 23/166 (13%)
Query: 8 LPPM---PSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
+PPM P + +++ + L A K L Q+FL + +T KI G +V E+GPGPG
Sbjct: 1 MPPMSDLPPVGTVVRSHGLLAKKTLGQHFLLDMNITRKIAALCALSPGEDVIEIGPGPGG 60
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
+TR++L A L IE+D R P L ++ A P + GD +S D
Sbjct: 61 LTRALLEAG-AALTTIERDDRIVPILSEISAAFPGQLTPLEGDALSV------------D 107
Query: 125 WSEGLPGIRIIG-NLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV 169
+ +PG +I NLP+N+ST L+++W+ L P+ R++V+
Sbjct: 108 YRALMPGGGVIASNLPYNISTELLVRWLT------LSPRPWRRMVL 147
>gi|347760212|ref|YP_004867773.1| dimethyladenosine transferase [Gluconacetobacter xylinus NBRC 3288]
gi|347579182|dbj|BAK83403.1| dimethyladenosine transferase [Gluconacetobacter xylinus NBRC 3288]
Length = 282
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R+ I + L A K L Q+FL +P +T +I AG ++G V EVGPGPG +TR++L+
Sbjct: 13 LRETIARHGLDARKALGQHFLLDPGITARIAALAGDLSGQNVVEVGPGPGGLTRALLDTA 72
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
R+V +E D R + LA + + D M + + R +
Sbjct: 73 AVRVVAVEVDTRAVAIIGELAARAEGRLEVVEADAMRLDLTTLCPAPR-----------Q 121
Query: 134 IIGNLPFNVSTPLIIKWI-QAISENLLFPKHKRQLVVSLLERACVKP 179
+I NLP+NV TPL++ W+ QA + L + ++ ER C P
Sbjct: 122 VIANLPYNVGTPLLVGWLRQAAAWTRLTLMFQHEVA----ERICAAP 164
>gi|388543070|ref|ZP_10146362.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. M47T1]
gi|388279156|gb|EIK98726.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. M47T1]
Length = 268
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 13/136 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ G+ V E+GPG G++T +LN A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSINAREGDRVLEIGPGQGALTEGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L+ A H GD + F + +E PG +R++GNLP
Sbjct: 64 ELDKDLVPILNN-QFAGRGNFSLHQGDALKFDFHTLGAE----------PGSLRVVGNLP 112
Query: 140 FNVSTPLIIKWIQAIS 155
+N+STPLI + S
Sbjct: 113 YNISTPLIFHLLSNAS 128
>gi|399007391|ref|ZP_10709901.1| dimethyladenosine transferase [Pseudomonas sp. GM17]
gi|425901934|ref|ZP_18878525.1| dimethyladenosine transferase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397892756|gb|EJL09233.1| dimethyladenosine transferase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|398120363|gb|EJM10027.1| dimethyladenosine transferase [Pseudomonas sp. GM17]
Length = 272
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 13/133 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ +G+ + E+GPG G++T +LN A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSINAKSGDRMLEIGPGQGALTEGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L+ A H GD + F ++ PG +R++GNLP
Sbjct: 64 ELDKDLVPILNQ-QFAGRDNFSLHQGDALKFDFNSL----------NAAPGSLRVVGNLP 112
Query: 140 FNVSTPLIIKWIQ 152
+N+STPLI +Q
Sbjct: 113 YNISTPLIFHLLQ 125
>gi|307243374|ref|ZP_07525533.1| dimethyladenosine transferase [Peptostreptococcus stomatis DSM
17678]
gi|306493244|gb|EFM65238.1| dimethyladenosine transferase [Peptostreptococcus stomatis DSM
17678]
Length = 292
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 24/200 (12%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RL + D++K + + K L QNFL + + DKIV AG G+++ EVGPG G++T
Sbjct: 4 RLSSHSATMDLVKKHGFKFTKSLGQNFLIDDNIVDKIVAGAGIGPGDKIIEVGPGIGTLT 63
Query: 67 RSILNRRPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
R + +R A L+ +E D P L D L D + +++ D R
Sbjct: 64 REMASRAEA-LMAVEIDKNLIPILADTLGDY----------DNVKIVNEDIIKADIRGLI 112
Query: 126 SEGLPG--IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRP 183
E L G ++++ NLP+ ++TP+I+++++ EN+ + + ER +P
Sbjct: 113 DENLGGGPVKLVANLPYYITTPIIMRFLE---ENINVTDIVVMVQKEVAERMNAQP---- 165
Query: 184 YQLSVQEFGQICLAYRDMCE 203
++FG + +A + C+
Sbjct: 166 ---GGKDFGALSVAVQYYCD 182
>gi|291295556|ref|YP_003506954.1| dimethyladenosine transferase [Meiothermus ruber DSM 1279]
gi|290470515|gb|ADD27934.1| dimethyladenosine transferase [Meiothermus ruber DSM 1279]
Length = 276
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 94/203 (46%), Gaps = 34/203 (16%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+RD+++ Y L+A K+ QNFL E +IV G G V EVGPG G++TR+ L
Sbjct: 17 VRDLLERYGLKADKRFGQNFLVERSYLQQIVEAVGLTPGQTVVEVGPGLGTLTRA-LAEA 75
Query: 74 PARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
AR+V IE D R + LA PV D +SF DWS P
Sbjct: 76 GARVVSIEMDRRLEAVYAETLAG---LPVQIIWADALSF------------DWSSLPPQS 120
Query: 133 RIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFG 192
GNLP+N++TPLI + LL R++V + + ++ + RP + +G
Sbjct: 121 LFAGNLPYNIATPLITQ--------LLLSNRFRRIVALVQKEVALRMVARP---ATPAYG 169
Query: 193 QICL------AYRDMCEEMPGLY 209
+ L A R + + PG +
Sbjct: 170 LLSLRVQYHAAARRIVDVPPGAF 192
>gi|424068226|ref|ZP_17805682.1| dimethyladenosine transferase [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|407998608|gb|EKG39012.1| dimethyladenosine transferase [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
Length = 268
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLD-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ + P + H GD + F + +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q+ S
Sbjct: 114 NISTPLIFHLLQSAS 128
>gi|421848680|ref|ZP_16281667.1| dimethyladenosine transferase [Acetobacter pasteurianus NBRC
101655]
gi|371460560|dbj|GAB26870.1| dimethyladenosine transferase [Acetobacter pasteurianus NBRC
101655]
Length = 260
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP 84
A K L Q+FL +P +T++I AG + G V EVGPGPG +TR++LN + +E D
Sbjct: 3 ARKALGQHFLLDPGVTERIATLAGNLKGRHVVEVGPGPGGLTRALLNGPAESVTAVELDS 62
Query: 85 RFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST 144
R + LA P + D + + + R +II NLP+NV+T
Sbjct: 63 RAVLVIQELAGFYPNRLKVVEADALKCDLTELCPAPR-----------QIIANLPYNVAT 111
Query: 145 PLIIKWIQAISENLLFPKHKRQLVVSLLERACVKP 179
PL+I W++ + + + + + ER C P
Sbjct: 112 PLLIGWLR---QGNAWERLTLMFQLEVAERICAAP 143
>gi|359780754|ref|ZP_09283979.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas psychrotolerans L19]
gi|359370814|gb|EHK71380.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas psychrotolerans L19]
Length = 263
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 73/135 (54%), Gaps = 12/135 (8%)
Query: 17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPAR 76
+ +LY+ RA K+ QNFL + + +I+R G + E+GPG G++T+ +L AR
Sbjct: 1 MTELYQHRARKRFGQNFLHDAGVIHRILRAIHGRPGERLLEIGPGQGALTKGLLG-SGAR 59
Query: 77 LVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIG 136
L +IE D P L + +P H GD M + + ++ + DR +R++G
Sbjct: 60 LDVIELDQDLIPLLRLKFGLNPL-FTLHQGDAMKYDLSSIAAGDR----------LRVVG 108
Query: 137 NLPFNVSTPLIIKWI 151
NLP+N+STPLI +
Sbjct: 109 NLPYNISTPLIFHLL 123
>gi|302130722|ref|ZP_07256712.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato
NCPPB 1108]
Length = 268
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
++ RA K+ QNFL + + DKI+R + + E+GPG G++T +LN A+L ++
Sbjct: 5 FQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ + P + H GD + F + +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILNSQFASQPN-FNLHQGDALKFDFNTLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|28867779|ref|NP_790398.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|422659008|ref|ZP_16721438.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. lachrymans str. M302278]
gi|33516927|sp|Q88A46.1|RSMA_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|28851014|gb|AAO54093.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|331017631|gb|EGH97687.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. lachrymans str. M302278]
Length = 268
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
++ RA K+ QNFL + + DKI+R + + E+GPG G++T +LN A+L ++
Sbjct: 5 FQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ + P + H GD + F + +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILNSQFASQPN-FNLHQGDALKFDFNTLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|391328325|ref|XP_003738640.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like
[Metaseiulus occidentalis]
Length = 223
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARL 77
++L+ L K Q+FL +P + +I AG ++ V EVGPGPG +TR++L ++
Sbjct: 1 MELHGLSPKKSFGQHFLLDPSIVARIAHLAGDLSHVSVIEVGPGPGGLTRALLATSARKI 60
Query: 78 VLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN 137
+E D R P L+ L Q +P + D +++ + + + R +I+ N
Sbjct: 61 FAVEIDTRAIPILEDLRQCNPDRLDIISADAVTYDLATLGTAPR-----------QIVAN 109
Query: 138 LPFNVSTPLIIKWIQ 152
LP+NV T L+I W++
Sbjct: 110 LPYNVGTKLLINWLE 124
>gi|422650761|ref|ZP_16713562.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. actinidiae str. M302091]
gi|330963845|gb|EGH64105.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. actinidiae str. M302091]
Length = 268
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
++ RA K+ QNFL + + DKI+R + + E+GPG G++T +LN A+L ++
Sbjct: 5 FQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ + P + H GD + F + +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILNSQFASKPN-FNLHQGDALKFDFNTLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|398856717|ref|ZP_10612435.1| dimethyladenosine transferase [Pseudomonas sp. GM79]
gi|398242689|gb|EJN28296.1| dimethyladenosine transferase [Pseudomonas sp. GM79]
Length = 272
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T +LN A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTEGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ AS H H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFASKSNFHLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI + S
Sbjct: 114 NISTPLIFHLLHNAS 128
>gi|213967675|ref|ZP_03395822.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato T1]
gi|301382735|ref|ZP_07231153.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato
Max13]
gi|302063470|ref|ZP_07255011.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato K40]
gi|213927451|gb|EEB60999.1| dimethyladenosine transferase [Pseudomonas syringae pv. tomato T1]
Length = 268
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
++ RA K+ QNFL + + DKI+R + + E+GPG G++T +LN A+L ++
Sbjct: 5 FQHRARKRFGQNFLHDAGVLDKILRAIRAKPEDRLLEIGPGQGALTEGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ + P + H GD + F + +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILNSQFASQPN-FNLHQGDALKFDFNTLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|94497692|ref|ZP_01304260.1| dimethyladenosine transferase [Sphingomonas sp. SKA58]
gi|94422909|gb|EAT07942.1| dimethyladenosine transferase [Sphingomonas sp. SKA58]
Length = 244
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 59/115 (51%), Gaps = 12/115 (10%)
Query: 39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP 98
+ D+I G +T EVGPGPG +TR+IL R RLV +E+D R P L LA A P
Sbjct: 1 MLDRIAAIPGPLTDASAFEVGPGPGGLTRAIL-RAGGRLVAVERDDRCLPALAELADAFP 59
Query: 99 CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153
+ GD M Q +E G II NLP+NV TPL++ W+ A
Sbjct: 60 GQLKVIAGDAMQIDAQ-----------AEAGDGAHIIANLPYNVGTPLLVGWLSA 103
>gi|422647520|ref|ZP_16710648.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. maculicola str. ES4326]
gi|330961062|gb|EGH61322.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. maculicola str. ES4326]
Length = 268
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +LN A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRAKSEERLLEIGPGQGALTEGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ P H GD + F ++ +E +R++GNLP+
Sbjct: 64 ELDKDLIPILNSQFAGKPN-FSLHQGDALKFDFNSLGAEPH---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|302185943|ref|ZP_07262616.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae
642]
Length = 268
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLD-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ P + H GD + F + +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILNSQFAGKPN-FNLHQGDALKFDFNTLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|424074235|ref|ZP_17811645.1| dimethyladenosine transferase [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|407994740|gb|EKG35299.1| dimethyladenosine transferase [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
Length = 268
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLD-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ + P + H GD + F + +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|398997172|ref|ZP_10700002.1| dimethyladenosine transferase [Pseudomonas sp. GM21]
gi|398124665|gb|EJM14171.1| dimethyladenosine transferase [Pseudomonas sp. GM21]
Length = 272
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 13/136 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ T + V E+GPG G++T+ +LN A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSIHAKTEDRVLEIGPGQGALTQGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L+ A H GD + F ++ PG +R++GNLP
Sbjct: 64 ELDKDLVPILNQ-QFAGKSNFSLHQGDALKFDFTSL----------NAAPGSLRVVGNLP 112
Query: 140 FNVSTPLIIKWIQAIS 155
+N+STPLI + S
Sbjct: 113 YNISTPLIFHLLHNAS 128
>gi|289676165|ref|ZP_06497055.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae
FF5]
gi|440721016|ref|ZP_20901426.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae BRIP34876]
gi|440727217|ref|ZP_20907456.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae BRIP34881]
gi|443641949|ref|ZP_21125799.1| Dimethyladenosine transferase [Pseudomonas syringae pv. syringae
B64]
gi|440364411|gb|ELQ01543.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae BRIP34881]
gi|440364789|gb|ELQ01911.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae BRIP34876]
gi|443281966|gb|ELS40971.1| Dimethyladenosine transferase [Pseudomonas syringae pv. syringae
B64]
Length = 268
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLD-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ + P + H GD + F + +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|422618520|ref|ZP_16687217.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. japonica str. M301072]
gi|330898897|gb|EGH30316.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. japonica str. M301072]
Length = 268
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLD-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ + P + H GD + F + +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|422673107|ref|ZP_16732468.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. aceris str. M302273]
gi|330970842|gb|EGH70908.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. aceris str. M302273]
Length = 268
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRARPEDRLLEIGPGQGALTEGLLD-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ + P + H GD + F + +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|71735918|ref|YP_272932.1| dimethyladenosine transferase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257483106|ref|ZP_05637147.1| dimethyladenosine transferase [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|416014380|ref|ZP_11562207.1| dimethyladenosine transferase [Pseudomonas syringae pv. glycinea
str. B076]
gi|416021882|ref|ZP_11567173.1| dimethyladenosine transferase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422406489|ref|ZP_16483517.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. glycinea str. race 4]
gi|422595492|ref|ZP_16669779.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. lachrymans str. M301315]
gi|422682321|ref|ZP_16740587.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|118600884|sp|Q48NT7.1|RSMA_PSE14 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|71556471|gb|AAZ35682.1| dimethyladenosine transferase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320326009|gb|EFW82067.1| dimethyladenosine transferase [Pseudomonas syringae pv. glycinea
str. B076]
gi|320332056|gb|EFW87992.1| dimethyladenosine transferase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330881716|gb|EGH15865.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. glycinea str. race 4]
gi|330985796|gb|EGH83899.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. lachrymans str. M301315]
gi|331011661|gb|EGH91717.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. tabaci str. ATCC 11528]
Length = 268
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +LN A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L P + H GD + F ++ +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|289627688|ref|ZP_06460642.1| dimethyladenosine transferase [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|422583663|ref|ZP_16658784.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330868491|gb|EGH03200.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 268
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +LN A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L P + H GD + F ++ +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|398841896|ref|ZP_10599102.1| dimethyladenosine transferase [Pseudomonas sp. GM102]
gi|398107260|gb|EJL97266.1| dimethyladenosine transferase [Pseudomonas sp. GM102]
Length = 272
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTKGLLD-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ AS H H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFASKSNFHLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI + S
Sbjct: 114 NISTPLIFHLLHNAS 128
>gi|422607556|ref|ZP_16679554.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. mori str. 301020]
gi|330891196|gb|EGH23857.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. mori str. 301020]
Length = 268
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +LN A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L P + H GD + F ++ +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|289649007|ref|ZP_06480350.1| dimethyladenosine transferase [Pseudomonas syringae pv. aesculi
str. 2250]
Length = 268
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +LN A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L P + H GD + F ++ +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|152987663|ref|YP_001346131.1| dimethyladenosine transferase [Pseudomonas aeruginosa PA7]
gi|150962821|gb|ABR84846.1| dimethyladenosine transferase [Pseudomonas aeruginosa PA7]
Length = 268
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query: 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLV 78
+LY+ RA K+ QNFL + + +I+R G + E+GPG G++T +L ARL
Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLG-SGARLD 61
Query: 79 LIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138
+IE D P L + P H GD + F ++ D + +R++GNL
Sbjct: 62 VIELDQDLIPLLKLKFGLEPR-FSLHQGDALKFDFASLVESDEK---------LRVVGNL 111
Query: 139 PFNVSTPLIIKWIQ 152
P+N+STPLI ++
Sbjct: 112 PYNISTPLIFHLLE 125
>gi|320335301|ref|YP_004172012.1| ribosomal RNA small subunit methyltransferase A [Deinococcus
maricopensis DSM 21211]
gi|319756590|gb|ADV68347.1| Ribosomal RNA small subunit methyltransferase A [Deinococcus
maricopensis DSM 21211]
Length = 282
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 27/171 (15%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
++RD+++ + +RA K L QNFL + + I G +G V EVGPG G +TR +
Sbjct: 14 TVRDLMQRHGIRATKSLGQNFLVDGNVLRSIADAGGAASGVSVLEVGPGLGVLTREVAE- 72
Query: 73 RPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
R A +V +EKD R P L + LA V GD + F D+ G
Sbjct: 73 RGAHVVTLEKDERLRPVLAETLAG---LDVEVVWGDALKF------------DYDRLPDG 117
Query: 132 IRIIGNLPFNVSTPLIIKWIQA---ISENLLFPKHKRQLVVSLLERACVKP 179
R+I NLP+ +ST L+ K++ + +S +L + + ER KP
Sbjct: 118 TRVIANLPYYISTALLSKFMASARIVSATVLVQRE-------VAERLAAKP 161
>gi|440744084|ref|ZP_20923390.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae BRIP39023]
gi|440374540|gb|ELQ11268.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae BRIP39023]
Length = 268
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLD-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ P + H GD + F + +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILNGQFANKPN-FNLHQGDALKFDFNTLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|77461356|ref|YP_350863.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf0-1]
gi|118600888|sp|Q3K5T2.1|RSMA_PSEPF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|77385359|gb|ABA76872.1| dimethyladenosine transferase [Pseudomonas fluorescens Pf0-1]
Length = 272
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ G+ + E+GPG G++T ILN A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSINAKAGDRMLEIGPGQGALTAGILN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A + H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI +
Sbjct: 114 NISTPLIFHLLN 125
>gi|398981221|ref|ZP_10689405.1| dimethyladenosine transferase [Pseudomonas sp. GM25]
gi|398133939|gb|EJM23120.1| dimethyladenosine transferase [Pseudomonas sp. GM25]
Length = 272
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ G+ + E+GPG G++T ILN A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSISAKAGDRMLEIGPGQGALTAGILN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A + H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI +
Sbjct: 114 NISTPLIFHLLN 125
>gi|429334667|ref|ZP_19215321.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas putida CSV86]
gi|428760738|gb|EKX82998.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas putida CSV86]
Length = 268
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R G + E+GPG G++T +L A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRAINAKAGEHILEIGPGQGALTEGVLG-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ AS H GD + F + + R +R++GNLP+
Sbjct: 64 ELDKDLVPILNQ-QFASRDNFRLHQGDALKFDFTTLGAAPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 114 NISTPLIFHLL 124
>gi|66047854|ref|YP_237695.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae
B728a]
gi|75500351|sp|Q4ZMG5.1|RSMA_PSEU2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|63258561|gb|AAY39657.1| dimethyladenosine transferase [Pseudomonas syringae pv. syringae
B728a]
Length = 268
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRARPEDRLLEIGPGQGALTEGLLD-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ + P + H GD + F + ++ R +R++GNLP+
Sbjct: 64 ELDKDLIPILNGQFASKPN-FNLHQGDALKFDFNTLGADPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|422591071|ref|ZP_16665720.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. morsprunorum str. M302280]
gi|330878396|gb|EGH12545.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae pv. morsprunorum str. M302280]
Length = 268
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
++ RA K+ QNFL + + DKI+R + + E+GPG G++T +L A+L ++
Sbjct: 5 FQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLG-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ + P + H GD + F + +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILNSQFASKPN-FNLHQGDALKFDFNTLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|251794062|ref|YP_003008793.1| dimethyladenosine transferase [Paenibacillus sp. JDR-2]
gi|247541688|gb|ACS98706.1| dimethyladenosine transferase [Paenibacillus sp. JDR-2]
Length = 298
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 19/201 (9%)
Query: 4 KALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPG 63
KA+ + ++II Y K L QNFL + + KIV AG E+GPG G
Sbjct: 7 KAIEVATPKRTKEIIAKYGFSFKKSLGQNFLIDQNILHKIVSAAGLDKTKGALEIGPGIG 66
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRR 122
++T+ L + IE D R P L D+LA V H GDV+ ++ +F E+R
Sbjct: 67 ALTQH-LAAAAGTVTAIEIDNRLIPILGDILAGEEHVKV-VH-GDVLKLDLKKLF-EERF 122
Query: 123 RDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILR 182
D + G+ ++ NLP+ V+TP+++K ++ E L + + ER KP
Sbjct: 123 AD----VAGVSVVANLPYYVTTPILMKLLE---ERLPLENIVVMIQKEVAERMAAKP--- 172
Query: 183 PYQLSVQEFGQICLAYRDMCE 203
+E+G + +A + CE
Sbjct: 173 ----GGKEYGSLSVAVQYYCE 189
>gi|422296567|ref|ZP_16384234.1| dimethyladenosine transferase [Pseudomonas avellanae BPIC 631]
gi|407992251|gb|EKG33924.1| dimethyladenosine transferase [Pseudomonas avellanae BPIC 631]
Length = 268
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
++ RA K+ QNFL + + DKI+R + + E+GPG G++T +L A+L ++
Sbjct: 5 FQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLG-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ + P + H GD + F + +E R +R++GNLP+
Sbjct: 64 ELDKDLIPILNSQFASKPN-FNLHQGDALKFDFNTLGAEPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|398901159|ref|ZP_10650110.1| dimethyladenosine transferase [Pseudomonas sp. GM50]
gi|398180278|gb|EJM67864.1| dimethyladenosine transferase [Pseudomonas sp. GM50]
Length = 272
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTKGLLD-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A H H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFHLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI + S
Sbjct: 114 NISTPLIFHLLHNAS 128
>gi|386727501|ref|YP_006193827.1| protein RsmA [Paenibacillus mucilaginosus K02]
gi|384094626|gb|AFH66062.1| protein RsmA [Paenibacillus mucilaginosus K02]
Length = 305
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 21/190 (11%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
D++K + + K L QNFL + + +KIV A E+GPG G++T+ L + A
Sbjct: 23 DLLKRHGFKLKKSLGQNFLIDTNVLNKIVGAAELDKTKGALEIGPGIGALTQQ-LAKAAA 81
Query: 76 RLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII 135
R+ +E D R P L P H GDV+ ++ ++F E +SE G+ ++
Sbjct: 82 RVTAVEIDQRLLPLLKETLAPYPHASVIH-GDVLQVSLNDLFKE----HFSE-CSGVSVV 135
Query: 136 GNLPFNVSTPLIIKWIQAI--SENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
NLP+ V+TP+I+K ++ EN++ K + ER P +E+G
Sbjct: 136 ANLPYYVTTPIIMKLLEEKLPLENIVVMIQKE-----VAERMAAGP-------GGKEYGS 183
Query: 194 ICLAYRDMCE 203
+ +A + CE
Sbjct: 184 LSIAVQYYCE 193
>gi|347727044|gb|AEP19880.1| dimethyladenosine transferase [Exiguobacterium sp. 11-28]
Length = 292
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 96/188 (51%), Gaps = 13/188 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+ I++ + K L QNFL + + +KIV A + V E+GPG GS+T +R
Sbjct: 11 KSILERHGFSFKKSLGQNFLIDLNILNKIVDAAELGEASGVLEIGPGIGSLTEQ-SAKRA 69
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V +E D R P L+ SP P VH GD + +Q++ R +S+G+ I
Sbjct: 70 KKVVALEIDQRLLPILE--DTMSPYPHVHVIHGDALELDIQSIV---EREFFSQGIEDIS 124
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQE 190
++ NLP+ V+TP+I++ +++ + F + + ER KP + Y +++Q
Sbjct: 125 VVANLPYYVTTPIIMRLLES---QIKFRSLVMMIQKEVAERIGAKPGTKAYGSLSIAIQY 181
Query: 191 FGQICLAY 198
+ + +++
Sbjct: 182 YAEANVSF 189
>gi|424925257|ref|ZP_18348618.1| dimethyladenosine transferase [Pseudomonas fluorescens R124]
gi|404306417|gb|EJZ60379.1| dimethyladenosine transferase [Pseudomonas fluorescens R124]
Length = 272
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ +G+ + E+GPG G++T +LN A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSISAKSGDRMLEIGPGQGALTAGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A + H GD + F + + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNTLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI +
Sbjct: 114 NISTPLIFHLLN 125
>gi|307546072|ref|YP_003898551.1| dimethyladenosine transferase [Halomonas elongata DSM 2581]
gi|307218096|emb|CBV43366.1| dimethyladenosine transferase [Halomonas elongata DSM 2581]
Length = 268
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL +P + ++VR G G + EVGPG G++T +L L +IE D
Sbjct: 9 RARKRFGQNFLRDPGIISRLVRAIGPRPGQRLVEVGPGQGALTEPLLEAADGHLEVIELD 68
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L + P V H GD + F + + + P +R++GNLP+N+S
Sbjct: 69 RDLIPGLRVQFFDKPGFV-IHEGDALKFDFRELRGDG---------PALRVVGNLPYNIS 118
Query: 144 TPLIIKWIQA 153
TPLI + A
Sbjct: 119 TPLISHLLAA 128
>gi|312871246|ref|ZP_07731344.1| dimethyladenosine transferase [Lactobacillus iners LEAF 3008A-a]
gi|312872808|ref|ZP_07732873.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2062A-h1]
gi|311091850|gb|EFQ50229.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2062A-h1]
gi|311093260|gb|EFQ51606.1| dimethyladenosine transferase [Lactobacillus iners LEAF 3008A-a]
Length = 295
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R I+ Y ++A K L QNFL + + KIV +AG + G++V E+GPG GS+T +L
Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLL-LAG 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPV-HFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-- 131
A+++ E DP D+L P + ++ L D M+++ D D ++
Sbjct: 73 AKVLAYEVDPDLP---DILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNR 129
Query: 132 -IRIIGNLPFNVSTPLIIKWIQA 153
I ++ NLP+ ++TP+I+K + +
Sbjct: 130 PISVVANLPYYITTPIILKLMHS 152
>gi|298160150|gb|EFI01179.1| Dimethyladenosine transferase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 268
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +LN A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L P + H GD + F ++ +E +R++GNLP+
Sbjct: 64 ELDKDLIPILTGQFGNKPN-FNLHQGDALKFDFNSLGAEPH---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|328950176|ref|YP_004367511.1| ribosomal RNA small subunit methyltransferase A [Marinithermus
hydrothermalis DSM 14884]
gi|328450500|gb|AEB11401.1| Ribosomal RNA small subunit methyltransferase A [Marinithermus
hydrothermalis DSM 14884]
Length = 277
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 27/178 (15%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
++R +++ Y LRA K+ QNFL + L IVR A G V EVGPG G++TR+ L
Sbjct: 13 TVRALLERYGLRADKRFGQNFLVDGNLLGVIVRTAQVRPGERVYEVGPGLGTLTRA-LAE 71
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
A++ IEKD R P L+ + V GD +++ W E P
Sbjct: 72 AGAKVTAIEKDQRLLPVLE--ETLAGLNVTVVPGDALAYP------------WDEVPPDS 117
Query: 133 RIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV----SLLERACVKPILRPYQL 186
+ NLP+N+STPL+ ++A R+LVV + +R +P Y L
Sbjct: 118 LFVANLPYNISTPLLTAVLRA--------NRFRRLVVLVQKEVADRLAARPATEAYGL 167
>gi|309808503|ref|ZP_07702402.1| dimethyladenosine transferase [Lactobacillus iners LactinV 01V1-a]
gi|308168331|gb|EFO70450.1| dimethyladenosine transferase [Lactobacillus iners LactinV 01V1-a]
Length = 295
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R I+ Y ++A K L QNFL + + KIV +AG + G++V E+GPG GS+T +L
Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLL-LAG 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPV-HFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A+++ E DP D+L P + ++ L D M+++ D D ++ R
Sbjct: 73 AKVLAYEVDPDLP---DILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNR 129
Query: 134 ---IIGNLPFNVSTPLIIKWIQA 153
++ NLP+ ++TP+I+K + +
Sbjct: 130 PIIVVANLPYYITTPIILKLMHS 152
>gi|347727108|gb|AEP19912.1| dimethyladenosine transferase [Exiguobacterium sp. N39]
Length = 292
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 95/188 (50%), Gaps = 13/188 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+ I++ + K L QNFL + + +KIV A + V E+GPG GS+T +R
Sbjct: 11 KSILERHGFSFKKSLGQNFLIDLNILNKIVDAAELGEASGVLEIGPGIGSLTEQ-SAKRA 69
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V +E D R P L+ SP P VH GD + +Q + R +S+G+ I
Sbjct: 70 KKVVALEIDQRLLPILE--DTMSPYPHVHVIHGDALELDIQAIV---EREFFSQGIEDIS 124
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQE 190
++ NLP+ V+TP+I++ +++ + F + + ER KP + Y +++Q
Sbjct: 125 VVANLPYYVTTPIIMRLLES---QIKFRSLVMMIQKEVAERIGAKPGTKAYGSLSIAIQY 181
Query: 191 FGQICLAY 198
+ + +++
Sbjct: 182 YAEANVSF 189
>gi|58584664|ref|YP_198237.1| dimethyladenosine transferase [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|81311641|sp|Q5GSM9.1|RSMA_WOLTR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|58418980|gb|AAW70995.1| Dimethyladenosine transferase [Wolbachia endosymbiont strain TRS of
Brugia malayi]
Length = 261
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 21/186 (11%)
Query: 18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARL 77
+K + L+ K L QNF+ +T +IV AG + V E+GPG G++T+ IL P L
Sbjct: 1 MKKFLLKPKKSLGQNFILSSEITKRIVVLAGNLEDFNVIEIGPGYGALTKEILAHNPKSL 60
Query: 78 VLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN 137
+ IEKD C D L D + + + +++I N
Sbjct: 61 LAIEKDSNLVKCHDQLLNEHQGKFRIVEADALYVVEEELIERP-----------VKVIAN 109
Query: 138 LPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLA 197
LP+N+S L +KW+ I LF + +R +P + +++G + +
Sbjct: 110 LPYNISLALFLKWLNKIK---LFTTFTLMFQKEVADRIIARP-------NSKDYGSLSVL 159
Query: 198 YRDMCE 203
+ +C+
Sbjct: 160 SQLLCD 165
>gi|315654032|ref|ZP_07906948.1| dimethyladenosine transferase [Lactobacillus iners ATCC 55195]
gi|349611934|ref|ZP_08891164.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus sp.
7_1_47FAA]
gi|315488728|gb|EFU78374.1| dimethyladenosine transferase [Lactobacillus iners ATCC 55195]
gi|348608399|gb|EGY58384.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus sp.
7_1_47FAA]
Length = 295
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R I+ Y ++A K L QNFL + + KIV +AG + G++V E+GPG GS+T +L
Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLL-LAG 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPV-HFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A+++ E DP D+L P + ++ L D M+++ D D ++ R
Sbjct: 73 AKVLAYEVDPDLP---DILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNR 129
Query: 134 ---IIGNLPFNVSTPLIIKWIQA 153
++ NLP+ ++TP+I+K + +
Sbjct: 130 PIIVVANLPYYITTPIILKLMHS 152
>gi|309803693|ref|ZP_07697783.1| dimethyladenosine transferase [Lactobacillus iners LactinV 11V1-d]
gi|309804982|ref|ZP_07699040.1| dimethyladenosine transferase [Lactobacillus iners LactinV 09V1-c]
gi|309806700|ref|ZP_07700695.1| dimethyladenosine transferase [Lactobacillus iners LactinV 03V1-b]
gi|312874063|ref|ZP_07734098.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2052A-d]
gi|325913223|ref|ZP_08175592.1| dimethyladenosine transferase [Lactobacillus iners UPII 60-B]
gi|308164291|gb|EFO66548.1| dimethyladenosine transferase [Lactobacillus iners LactinV 11V1-d]
gi|308165742|gb|EFO67967.1| dimethyladenosine transferase [Lactobacillus iners LactinV 09V1-c]
gi|308166880|gb|EFO69064.1| dimethyladenosine transferase [Lactobacillus iners LactinV 03V1-b]
gi|311090403|gb|EFQ48812.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2052A-d]
gi|325477487|gb|EGC80630.1| dimethyladenosine transferase [Lactobacillus iners UPII 60-B]
Length = 295
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R I+ Y ++A K L QNFL + + KIV +AG + G++V E+GPG GS+T +L
Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLL-LAG 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPV-HFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A+++ E DP D+L P + ++ L D M+++ D D ++ R
Sbjct: 73 AKVLAYEVDPDLP---DILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNR 129
Query: 134 ---IIGNLPFNVSTPLIIKWIQA 153
++ NLP+ ++TP+I+K + +
Sbjct: 130 PIIVVANLPYYITTPIILKLMHS 152
>gi|329920627|ref|ZP_08277314.1| dimethyladenosine transferase [Lactobacillus iners SPIN 1401G]
gi|328935885|gb|EGG32345.1| dimethyladenosine transferase [Lactobacillus iners SPIN 1401G]
Length = 295
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R I+ Y ++A K L QNFL + + KIV +AG + G++V E+GPG GS+T +L
Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLL-LAG 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPV-HFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-- 131
A+++ E DP D+L P + ++ L D M+++ D D ++
Sbjct: 73 AKVLAYEVDPDLP---DILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNQ 129
Query: 132 -IRIIGNLPFNVSTPLIIKWIQA 153
I ++ NLP+ ++TP+I+K + +
Sbjct: 130 PIIVVANLPYYITTPIILKLMHS 152
>gi|307091890|gb|ADN28280.1| putative rRNA methyltransferase, partial [uncultured bacterium]
Length = 123
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP 98
LT +I R AG + G V EVGPGPG +TR+ L +R+V IE+DPR L +A+ P
Sbjct: 5 LTARIARAAGPLEGVTVVEVGPGPGGLTRAPLALSASRVVAIERDPRCVAALQTVAERYP 64
Query: 99 CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153
+ GD + E RI+ NLP+N++T L++ W+ A
Sbjct: 65 GRLTVIEGDALQIDASAYAQEGPA----------RIVANLPYNIATALLVSWLTA 109
>gi|312874729|ref|ZP_07734748.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2053A-b]
gi|311089474|gb|EFQ47899.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2053A-b]
Length = 295
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R I+ Y ++A K L QNFL + + KI+ +AG + G++V E+GPG GS+T +L
Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVEGSQVIEIGPGIGSLTEQLL-LAG 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPV-HFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A+++ E DP D+L P + ++ L D M+++ D D ++ R
Sbjct: 73 AKVLAYEVDPDLP---DILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNR 129
Query: 134 ---IIGNLPFNVSTPLIIKWIQA 153
++ NLP+ ++TP+I+K + +
Sbjct: 130 PIIVVANLPYYITTPIILKLMHS 152
>gi|210623277|ref|ZP_03293694.1| hypothetical protein CLOHIR_01644 [Clostridium hiranonis DSM 13275]
gi|210153678|gb|EEA84684.1| hypothetical protein CLOHIR_01644 [Clostridium hiranonis DSM 13275]
Length = 286
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 14/149 (9%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RL + +DI+ + + K L QNFL + + DKI+ A G++V EVGPG G++T
Sbjct: 3 RLSSHRATKDIVDKHGFKFSKSLGQNFLIDDNVIDKIIDGARVKEGDKVIEVGPGIGTLT 62
Query: 67 RSILNRRPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
R + +R ++V +E D P L + LA V +++ D +
Sbjct: 63 RE-MAKRAEKVVAVEIDKNLIPILKETLADFDNTEV----------VNEDILKVDINKLV 111
Query: 126 SEGLPG--IRIIGNLPFNVSTPLIIKWIQ 152
E L G +++I NLP+ ++TP+++K+++
Sbjct: 112 DEKLSGGPVKLIANLPYYITTPIVMKFLE 140
>gi|403382814|ref|ZP_10924871.1| dimethyladenosine transferase [Paenibacillus sp. JC66]
Length = 294
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 17/189 (8%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++II Y K L QNFL + + +IV A V E+GPG G++T L R
Sbjct: 16 KEIISKYGFTFKKSLGQNFLVDQNILARIVDAANLREDEGVLEIGPGIGALTEK-LAREA 74
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
R+V +E D R P L P H GDV+ +++ +F + +D + +
Sbjct: 75 GRVVAVEIDQRLLPILRDTLSVYPKVTVIH-GDVLKLSLKEIFDQHFAKDQP-----VSV 128
Query: 135 IGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQI 194
+ NLP+ V+TP+++K ++ E L +Q+VV + + + P +E+G +
Sbjct: 129 VANLPYYVTTPIVMKLLE---EKLPL----KQIVVMIQKEVAERMTASP---GGKEYGSL 178
Query: 195 CLAYRDMCE 203
+A + CE
Sbjct: 179 SIAVQYYCE 187
>gi|398924284|ref|ZP_10661101.1| dimethyladenosine transferase [Pseudomonas sp. GM48]
gi|398173615|gb|EJM61445.1| dimethyladenosine transferase [Pseudomonas sp. GM48]
Length = 272
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 13/133 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ T + + E+GPG G++T+ +L+ A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSIHAKTEDRLLEIGPGQGALTQGLLS-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L+ A + H GD + F ++ PG +R++GNLP
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNSL----------NAAPGSLRVVGNLP 112
Query: 140 FNVSTPLIIKWIQ 152
+N+STPLI +
Sbjct: 113 YNISTPLIFHLLH 125
>gi|422642714|ref|ZP_16706130.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae Cit 7]
gi|330955094|gb|EGH55354.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas syringae Cit 7]
Length = 268
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + DKI+R + + E+GPG G++T +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLD-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ P + H GD + F + +E R +R+ GNLP+
Sbjct: 64 ELDKDLIPILNGQFANKPN-FNLHQGDALKFDFNTLGAEPR---------SLRVGGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI +Q S
Sbjct: 114 NISTPLIFHLLQNAS 128
>gi|423093364|ref|ZP_17081160.1| dimethyladenosine transferase [Pseudomonas fluorescens Q2-87]
gi|397882263|gb|EJK98750.1| dimethyladenosine transferase [Pseudomonas fluorescens Q2-87]
Length = 272
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL +P + D I+R+ + + E+GPG G++T +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDPGVIDHILRSIHAKPDDRLLEIGPGQGALTEGLLD-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ AS + H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLVPILNQ-QFASRSNFNLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 114 NISTPLIFHLL 124
>gi|259500886|ref|ZP_05743788.1| dimethyladenosine transferase [Lactobacillus iners DSM 13335]
gi|302190661|ref|ZP_07266915.1| dimethyladenosine transferase [Lactobacillus iners AB-1]
gi|309809117|ref|ZP_07702990.1| dimethyladenosine transferase [Lactobacillus iners SPIN 2503V10-D]
gi|259167580|gb|EEW52075.1| dimethyladenosine transferase [Lactobacillus iners DSM 13335]
gi|308170562|gb|EFO72582.1| dimethyladenosine transferase [Lactobacillus iners SPIN 2503V10-D]
Length = 295
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R I+ Y ++A K L QNFL + + KI+ +AG + G++V E+GPG GS+T +L
Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVEGSQVIEIGPGIGSLTEQLL-LAG 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPV-HFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-- 131
A+++ E DP D+L P + ++ L D M+++ D D ++
Sbjct: 73 AKVLAYEVDPDLP---DILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNQ 129
Query: 132 -IRIIGNLPFNVSTPLIIKWIQA 153
I ++ NLP+ ++TP+I+K + +
Sbjct: 130 PIIVVANLPYYITTPIILKLMHS 152
>gi|337751810|ref|YP_004645972.1| protein RsmA [Paenibacillus mucilaginosus KNP414]
gi|379724747|ref|YP_005316878.1| protein RsmA [Paenibacillus mucilaginosus 3016]
gi|336302999|gb|AEI46102.1| RsmA [Paenibacillus mucilaginosus KNP414]
gi|378573419|gb|AFC33729.1| RsmA [Paenibacillus mucilaginosus 3016]
Length = 305
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 21/190 (11%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
D++K + + K L QNFL + + +KIV A E+GPG G++T+ L +
Sbjct: 23 DLLKRHGFKLKKSLGQNFLIDTNVLNKIVGAAELDKTKGALEIGPGIGALTQQ-LAKAAG 81
Query: 76 RLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII 135
R+ +E D R P L P H GDV+ ++ ++F E +SE G+ ++
Sbjct: 82 RVTAVEIDQRLLPLLKETLAPYPHASVIH-GDVLQVSLNDLFKE----HFSE-CSGVSVV 135
Query: 136 GNLPFNVSTPLIIKWIQAI--SENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
NLP+ V+TP+I+K ++ EN++ K + ER P +E+G
Sbjct: 136 ANLPYYVTTPIIMKLLEEKLPLENIVVMIQKE-----VAERMAAGP-------GGKEYGS 183
Query: 194 ICLAYRDMCE 203
+ +A + CE
Sbjct: 184 LSIAVQYYCE 193
>gi|347726994|gb|AEP19855.1| dimethyladenosine transferase [Exiguobacterium sp. EPVM]
Length = 292
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 96/188 (51%), Gaps = 13/188 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+ I++ + K L QNFL + + +KIV A + V E+GPG GS+T +R
Sbjct: 11 KSILERHGFSFKKSLGQNFLIDLNILNKIVDAAELGEASGVLEIGPGIGSLTEQ-SAKRA 69
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V +E D R P L+ SP P VH GD + ++++ R +S+G+ I
Sbjct: 70 KKVVALEIDQRLLPILE--DTMSPYPHVHVIHGDALELDIRDIV---EREFFSQGIEDIS 124
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQE 190
++ NLP+ V+TP+I++ +++ + F + + ER KP + Y +++Q
Sbjct: 125 VVANLPYYVTTPIIMRLLES---QIKFRSLVMMIQKEVAERIGAKPGTKAYGSLSIAIQY 181
Query: 191 FGQICLAY 198
+ + +++
Sbjct: 182 YAEANVSF 189
>gi|94985245|ref|YP_604609.1| dimethyladenosine transferase [Deinococcus geothermalis DSM 11300]
gi|118600863|sp|Q1IZ94.1|RSMA_DEIGD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|94555526|gb|ABF45440.1| dimethyladenosine transferase [Deinococcus geothermalis DSM 11300]
Length = 281
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 75/153 (49%), Gaps = 20/153 (13%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+RD++ + LR K L QNFL + + I + G G V EVGPG G +TR L R
Sbjct: 17 VRDLLTRHGLRPTKSLGQNFLIDGNILRAIAQAGGAAPGVPVLEVGPGLGVLTRE-LAAR 75
Query: 74 PARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
A + +EKD R P L + LA V GD + F D++ G
Sbjct: 76 GAHVTALEKDERLRPVLAETLAGQD---VQVVWGDALEF------------DYASLPAGT 120
Query: 133 RIIGNLPFNVSTPLIIKWIQA---ISENLLFPK 162
R+I NLP+ ++ PL+ +++QA IS +L K
Sbjct: 121 RVIANLPYYITGPLLARFMQAPGIISATVLVQK 153
>gi|91762164|ref|ZP_01264129.1| Dimethyladenosine transferase [Candidatus Pelagibacter ubique
HTCC1002]
gi|91717966|gb|EAS84616.1| Dimethyladenosine transferase [Candidatus Pelagibacter ubique
HTCC1002]
Length = 262
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 15/138 (10%)
Query: 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
++A K L QNFL + + +KIV + IT EV E+GPG G++T IL ++P +L ++EK
Sbjct: 3 IKAKKSLGQNFLIDREVLEKIV-SITDITNKEVLEIGPGSGNLTTYILKKKPKKLYVVEK 61
Query: 83 DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
D +L + + D++ + ++ S+ + + + GNLP+N+
Sbjct: 62 DDDLAI---LLKEKFDTEIKIINDDILKVS-ESTISDQK----------LSVFGNLPYNI 107
Query: 143 STPLIIKWIQAISENLLF 160
ST ++ KWI I N F
Sbjct: 108 STEILSKWILNIGSNFWF 125
>gi|71083413|ref|YP_266132.1| dimethyladenosine transferase [Candidatus Pelagibacter ubique
HTCC1062]
gi|119365045|sp|Q4FMR0.1|RSMA_PELUB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|71062526|gb|AAZ21529.1| Dimethyladenosine transferase [Candidatus Pelagibacter ubique
HTCC1062]
Length = 262
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 15/138 (10%)
Query: 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
++A K L QNFL + + +KIV + IT EV E+GPG G++T IL ++P +L ++EK
Sbjct: 3 VKAKKSLGQNFLIDREVLEKIV-SITDITNKEVLEIGPGSGNLTTYILKKKPKKLYVVEK 61
Query: 83 DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
D +L + + D++ + ++ S+ + + + GNLP+N+
Sbjct: 62 DDDLAI---LLKEKFDTEIKIINDDILKVS-ESTISDQK----------LSVFGNLPYNI 107
Query: 143 STPLIIKWIQAISENLLF 160
ST ++ KWI I N F
Sbjct: 108 STEILSKWILNIGSNFWF 125
>gi|255102733|ref|ZP_05331710.1| dimethyladenosine transferase [Clostridium difficile QCD-63q42]
gi|255308554|ref|ZP_05352725.1| dimethyladenosine transferase [Clostridium difficile ATCC 43255]
gi|423090624|ref|ZP_17078913.1| dimethyladenosine transferase [Clostridium difficile 70-100-2010]
gi|357556328|gb|EHJ37943.1| dimethyladenosine transferase [Clostridium difficile 70-100-2010]
Length = 289
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 79/147 (53%), Gaps = 10/147 (6%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RL + +++++ Y + K L QNFL + + DKI+ A G+ + EVGPG G++T
Sbjct: 3 RLSSHNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLT 62
Query: 67 RSILNRRPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
R + + ++V IE D P L D L+ V D++ +Q + +D
Sbjct: 63 RE-MGKIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQ--DILKVDIQELV-----KDK 114
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQ 152
G P ++++ NLP+ ++TP+++K+++
Sbjct: 115 LNGGP-VKLVANLPYYITTPIVMKFLE 140
>gi|255657480|ref|ZP_05402889.1| dimethyladenosine transferase [Clostridium difficile QCD-23m63]
gi|296449075|ref|ZP_06890865.1| dimethyladenosine transferase [Clostridium difficile NAP08]
gi|296879898|ref|ZP_06903871.1| dimethyladenosine transferase [Clostridium difficile NAP07]
gi|296262168|gb|EFH08973.1| dimethyladenosine transferase [Clostridium difficile NAP08]
gi|296429187|gb|EFH15061.1| dimethyladenosine transferase [Clostridium difficile NAP07]
Length = 289
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 79/147 (53%), Gaps = 10/147 (6%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RL + +++++ Y + K L QNFL + + DKI+ A G+ + EVGPG G++T
Sbjct: 3 RLSSHNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITGGDNIIEVGPGIGTLT 62
Query: 67 RSILNRRPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
R + + ++V IE D P L D L+ V D++ +Q + +D
Sbjct: 63 RE-MGKIAEKVVAIEIDRNLIPILKDTLSDLENTEVVNQ--DILKVDIQELV-----KDK 114
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQ 152
G P ++++ NLP+ ++TP+++K+++
Sbjct: 115 LNGGP-VKLVANLPYYITTPIVMKFLE 140
>gi|126701147|ref|YP_001090044.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Clostridium
difficile 630]
gi|254977148|ref|ZP_05273620.1| dimethyladenosine transferase [Clostridium difficile QCD-66c26]
gi|255094477|ref|ZP_05323955.1| dimethyladenosine transferase [Clostridium difficile CIP 107932]
gi|255316228|ref|ZP_05357811.1| dimethyladenosine transferase [Clostridium difficile QCD-76w55]
gi|255518890|ref|ZP_05386566.1| dimethyladenosine transferase [Clostridium difficile QCD-97b34]
gi|255652069|ref|ZP_05398971.1| dimethyladenosine transferase [Clostridium difficile QCD-37x79]
gi|260685043|ref|YP_003216328.1| dimethyladenosine transferase [Clostridium difficile CD196]
gi|260688701|ref|YP_003219835.1| dimethyladenosine transferase [Clostridium difficile R20291]
gi|306521805|ref|ZP_07408152.1| dimethyladenosine transferase [Clostridium difficile QCD-32g58]
gi|384362717|ref|YP_006200569.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium difficile BI1]
gi|118600854|sp|Q181C1.1|RSMA_CLOD6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|115252584|emb|CAJ70427.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) [Clostridium
difficile 630]
gi|260211206|emb|CBA66699.1| dimethyladenosine transferase [Clostridium difficile CD196]
gi|260214718|emb|CBE07385.1| dimethyladenosine transferase [Clostridium difficile R20291]
Length = 289
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 79/147 (53%), Gaps = 10/147 (6%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RL + +++++ Y + K L QNFL + + DKI+ A G+ + EVGPG G++T
Sbjct: 3 RLSSHNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLT 62
Query: 67 RSILNRRPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
R + + ++V IE D P L D L+ V D++ +Q + +D
Sbjct: 63 RE-MGKIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQ--DILKVDIQELV-----KDK 114
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQ 152
G P ++++ NLP+ ++TP+++K+++
Sbjct: 115 LNGGP-VKLVANLPYYITTPIVMKFLE 140
>gi|420137187|ref|ZP_14645182.1| dimethyladenosine transferase [Pseudomonas aeruginosa CIG1]
gi|421157632|ref|ZP_15616989.1| dimethyladenosine transferase [Pseudomonas aeruginosa ATCC 25324]
gi|403250028|gb|EJY63489.1| dimethyladenosine transferase [Pseudomonas aeruginosa CIG1]
gi|404550439|gb|EKA59188.1| dimethyladenosine transferase [Pseudomonas aeruginosa ATCC 25324]
Length = 268
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLV 78
+LY+ RA K+ QNFL + + +I+R G + E+GPG G++T +L ARL
Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLG-SGARLD 61
Query: 79 LIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138
+IE D P L L H GD + F + ++ + +R++GNL
Sbjct: 62 VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDLASLVESGEK---------LRVVGNL 111
Query: 139 PFNVSTPLIIKWIQ 152
P+N+STPLI ++
Sbjct: 112 PYNISTPLIFHLLE 125
>gi|423080853|ref|ZP_17069470.1| dimethyladenosine transferase [Clostridium difficile 002-P50-2011]
gi|423087255|ref|ZP_17075644.1| dimethyladenosine transferase [Clostridium difficile 050-P50-2011]
gi|357545193|gb|EHJ27173.1| dimethyladenosine transferase [Clostridium difficile 050-P50-2011]
gi|357552342|gb|EHJ34116.1| dimethyladenosine transferase [Clostridium difficile 002-P50-2011]
Length = 289
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 79/147 (53%), Gaps = 10/147 (6%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RL + +++++ Y + K L QNFL + + DKI+ A G+ + EVGPG G++T
Sbjct: 3 RLSSHNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLT 62
Query: 67 RSILNRRPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
R + + ++V IE D P L D L+ V D++ +Q + +D
Sbjct: 63 RE-MGKIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQ--DILKVDIQELV-----KDK 114
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQ 152
G P ++++ NLP+ ++TP+++K+++
Sbjct: 115 LNGGP-VKLVANLPYYITTPIVMKFLE 140
>gi|424942983|ref|ZP_18358746.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
NCMG1179]
gi|346059429|dbj|GAA19312.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
NCMG1179]
Length = 268
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLV 78
+LY+ RA K+ QNFL + + +I+R G + E+GPG G++T +L ARL
Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLG-SGARLD 61
Query: 79 LIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138
+IE D P L L H GD + F + ++ + +R++GNL
Sbjct: 62 VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDLASLVESGEK---------LRVVGNL 111
Query: 139 PFNVSTPLIIKWIQ 152
P+N+STPLI ++
Sbjct: 112 PYNISTPLIFHLLE 125
>gi|421151678|ref|ZP_15611286.1| dimethyladenosine transferase [Pseudomonas aeruginosa ATCC 14886]
gi|404526878|gb|EKA37065.1| dimethyladenosine transferase [Pseudomonas aeruginosa ATCC 14886]
Length = 268
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLV 78
+LY+ RA K+ QNFL + + +I+R G + E+GPG G++T +L ARL
Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRTIHAREGQRLLEIGPGQGALTEGLLG-SGARLD 61
Query: 79 LIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138
+IE D P L L H GD + F ++ + +R++GNL
Sbjct: 62 VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEK---------LRVVGNL 111
Query: 139 PFNVSTPLIIKWIQ 152
P+N+STPLI ++
Sbjct: 112 PYNISTPLIFHLLE 125
>gi|42519999|ref|NP_965914.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|99034443|ref|ZP_01314444.1| hypothetical protein Wendoof_01000753 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|62900551|sp|Q73IR3.1|RSMA_WOLPM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|42409736|gb|AAS13848.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 286
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 15/149 (10%)
Query: 18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARL 77
+K + L+ K L QNF+ +T KIV AG++ V E+GPG G++TR IL P L
Sbjct: 17 MKKFLLKPKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSL 76
Query: 78 VLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN 137
+ IEKD D L D + + + +++I N
Sbjct: 77 LSIEKDRDLVKHHDQLLNEHQGKYRIIEADALHIIEEELIER-----------PVKVIAN 125
Query: 138 LPFNVSTPLIIKWIQAI----SENLLFPK 162
LP+N+S L +KW+ +I S L+F K
Sbjct: 126 LPYNISVALFLKWLDSIKFFTSLTLMFQK 154
>gi|399000542|ref|ZP_10703268.1| dimethyladenosine transferase [Pseudomonas sp. GM18]
gi|398129769|gb|EJM19125.1| dimethyladenosine transferase [Pseudomonas sp. GM18]
Length = 272
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T +LN A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTAGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A + H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI + S
Sbjct: 114 NISTPLIFHLLHNAS 128
>gi|70732937|ref|YP_262708.1| dimethyladenosine transferase [Pseudomonas protegens Pf-5]
gi|118600886|sp|Q4K4X5.1|RSMA_PSEF5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|68347236|gb|AAY94842.1| dimethyladenosine transferase [Pseudomonas protegens Pf-5]
Length = 270
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 13/133 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T +L A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRMLEIGPGQGALTEGLLG-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L+ A + H GD + F + + PG +R++GNLP
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNTLGAA----------PGSLRVVGNLP 112
Query: 140 FNVSTPLIIKWIQ 152
+N+STPLI +Q
Sbjct: 113 YNISTPLIFHLLQ 125
>gi|225630006|ref|YP_002726797.1| dimethyladenosine transferase [Wolbachia sp. wRi]
gi|254808269|sp|C0R5G4.1|RSMA_WOLWR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|225591987|gb|ACN95006.1| dimethyladenosine transferase [Wolbachia sp. wRi]
Length = 272
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARL 77
+K + L+ K L QNF+ +T KIV AG++ V E+GPG G++TR IL P L
Sbjct: 1 MKKFLLKPKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSL 60
Query: 78 VLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN 137
+ IEKD D L D + T + + +++I N
Sbjct: 61 LSIEKDRDLVKHHDQLLNEHQGKYRIIEADALHVTEEELIER-----------PVKVIAN 109
Query: 138 LPFNVSTPLIIKWIQAI 154
LP+N+S L +KW+ I
Sbjct: 110 LPYNISVVLFLKWLNNI 126
>gi|15595789|ref|NP_249283.1| dimethyladenosine transferase [Pseudomonas aeruginosa PAO1]
gi|418584836|ref|ZP_13148893.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa MPAO1/P1]
gi|418590789|ref|ZP_13154694.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa MPAO1/P2]
gi|421515212|ref|ZP_15961898.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa PAO579]
gi|27151603|sp|Q9I5U5.1|RSMA_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|9946464|gb|AAG03981.1|AE004495_5 rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
PAO1]
gi|375045168|gb|EHS37754.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa MPAO1/P1]
gi|375050335|gb|EHS42817.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa MPAO1/P2]
gi|404348940|gb|EJZ75277.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa PAO579]
Length = 268
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLV 78
+LY+ RA K+ QNFL + + +I+R G + E+GPG G++T +L ARL
Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLG-SGARLD 61
Query: 79 LIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138
+IE D P L L H GD + F ++ + +R++GNL
Sbjct: 62 VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEK---------LRVVGNL 111
Query: 139 PFNVSTPLIIKWIQ 152
P+N+STPLI ++
Sbjct: 112 PYNISTPLIFHLLE 125
>gi|407368273|ref|ZP_11114805.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas mandelii JR-1]
Length = 272
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 13/136 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLG-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L+ A + H GD + F ++ PG +R++GNLP
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNSL----------NAAPGSLRVVGNLP 112
Query: 140 FNVSTPLIIKWIQAIS 155
+N+STPLI + S
Sbjct: 113 YNISTPLIFHLLHNAS 128
>gi|254455962|ref|ZP_05069391.1| dimethyladenosine transferase [Candidatus Pelagibacter sp.
HTCC7211]
gi|207082964|gb|EDZ60390.1| dimethyladenosine transferase [Candidatus Pelagibacter sp.
HTCC7211]
Length = 261
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 15/138 (10%)
Query: 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
++A K L QNFL + + +KI N IT + EVGPG G++T IL ++P ++ ++EK
Sbjct: 2 IKAKKSLGQNFLVDRNILEKIT-NIIQITDETILEVGPGTGNLTSFILKKKPKKIFVVEK 60
Query: 83 DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
D + L+ + ++ D++ ++F + + GNLP+N+
Sbjct: 61 DEKLANHLEETFKDQLTIIN---DDILKINESSLFE-----------SKVTVFGNLPYNI 106
Query: 143 STPLIIKWIQAISENLLF 160
ST ++ KWI S++L F
Sbjct: 107 STEILSKWITNSSKDLWF 124
>gi|49082884|gb|AAT50842.1| PA0592, partial [synthetic construct]
Length = 269
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLV 78
+LY+ RA K+ QNFL + + +I+R G + E+GPG G++T +L ARL
Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLG-SGARLD 61
Query: 79 LIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138
+IE D P L L H GD + F ++ + +R++GNL
Sbjct: 62 VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEK---------LRVVGNL 111
Query: 139 PFNVSTPLIIKWIQ 152
P+N+STPLI ++
Sbjct: 112 PYNISTPLIFHLLE 125
>gi|217076587|ref|YP_002334303.1| dimethyladenosine transferase [Thermosipho africanus TCF52B]
gi|217036440|gb|ACJ74962.1| dimethyladenosine transferase [Thermosipho africanus TCF52B]
Length = 261
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 16/138 (11%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
I D ++ YKL K L QNFL + KIV +A TG V E+GPG G+IT ++ ++
Sbjct: 3 IADYLRQYKLNLKKSLGQNFLTNLEIAKKIVESANVQTGETVLEIGPGAGTITEFLI-KK 61
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A +V +E D R TP LD + +++ D + F M+ + E+ +
Sbjct: 62 GANVVAVEIDKRLTPILDRFNEFENFKIYYQ--DFLKFDMK-LLGEN-----------FK 107
Query: 134 IIGNLPFNVSTPLIIKWI 151
++ N+P+++ T +IIK I
Sbjct: 108 VVSNIPYSI-TGMIIKKI 124
>gi|107099578|ref|ZP_01363496.1| hypothetical protein PaerPA_01000591 [Pseudomonas aeruginosa PACS2]
gi|254243686|ref|ZP_04937008.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
2192]
gi|386056662|ref|YP_005973184.1| dimethyladenosine transferase [Pseudomonas aeruginosa M18]
gi|451983550|ref|ZP_21931829.1| Dimethyladenosine transferase [Pseudomonas aeruginosa 18A]
gi|126197064|gb|EAZ61127.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
2192]
gi|347302968|gb|AEO73082.1| dimethyladenosine transferase [Pseudomonas aeruginosa M18]
gi|451758789|emb|CCQ84352.1| Dimethyladenosine transferase [Pseudomonas aeruginosa 18A]
Length = 268
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLV 78
+LY+ RA K+ QNFL + + +I+R G + E+GPG G++T +L ARL
Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLG-SGARLD 61
Query: 79 LIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138
+IE D P L L H GD + F ++ + +R++GNL
Sbjct: 62 VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEK---------LRVVGNL 111
Query: 139 PFNVSTPLIIKWIQ 152
P+N+STPLI ++
Sbjct: 112 PYNISTPLIFHLLE 125
>gi|116054320|ref|YP_788765.1| dimethyladenosine transferase [Pseudomonas aeruginosa UCBPP-PA14]
gi|218889333|ref|YP_002438197.1| dimethyladenosine transferase [Pseudomonas aeruginosa LESB58]
gi|254237194|ref|ZP_04930517.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
C3719]
gi|296387098|ref|ZP_06876597.1| dimethyladenosine transferase [Pseudomonas aeruginosa PAb1]
gi|355647009|ref|ZP_09054762.1| ribosomal RNA small subunit methyltransferase A [Pseudomonas sp.
2_1_26]
gi|392982005|ref|YP_006480592.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Pseudomonas
aeruginosa DK2]
gi|416855756|ref|ZP_11911677.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa 138244]
gi|416873060|ref|ZP_11917187.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa 152504]
gi|419756074|ref|ZP_14282426.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa PADK2_CF510]
gi|421172357|ref|ZP_15630132.1| dimethyladenosine transferase [Pseudomonas aeruginosa CI27]
gi|421178504|ref|ZP_15636117.1| dimethyladenosine transferase [Pseudomonas aeruginosa E2]
gi|115589541|gb|ABJ15556.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126169125|gb|EAZ54636.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
C3719]
gi|218769556|emb|CAW25316.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
LESB58]
gi|334842654|gb|EGM21257.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa 138244]
gi|334845358|gb|EGM23921.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa 152504]
gi|354828151|gb|EHF12278.1| ribosomal RNA small subunit methyltransferase A [Pseudomonas sp.
2_1_26]
gi|384397736|gb|EIE44147.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa PADK2_CF510]
gi|392317510|gb|AFM62890.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa DK2]
gi|404537953|gb|EKA47516.1| dimethyladenosine transferase [Pseudomonas aeruginosa CI27]
gi|404548353|gb|EKA57308.1| dimethyladenosine transferase [Pseudomonas aeruginosa E2]
gi|453045974|gb|EME93692.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas aeruginosa PA21_ST175]
Length = 268
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLV 78
+LY+ RA K+ QNFL + + +I+R G + E+GPG G++T +L ARL
Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLG-SGARLD 61
Query: 79 LIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138
+IE D P L L H GD + F ++ + +R++GNL
Sbjct: 62 VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFASLVESGEK---------LRVVGNL 111
Query: 139 PFNVSTPLIIKWIQ 152
P+N+STPLI ++
Sbjct: 112 PYNISTPLIFHLLE 125
>gi|88606758|ref|YP_505210.1| dimethyladenosine transferase [Anaplasma phagocytophilum HZ]
gi|122064279|sp|Q2GK91.1|RSMA_ANAPZ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|88597821|gb|ABD43291.1| dimethyladenosine transferase [Anaplasma phagocytophilum HZ]
Length = 269
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 11/134 (8%)
Query: 18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARL 77
+K+ K R K L Q F+ +P + +KIV AG + V EVGPG G +T+SILN+ RL
Sbjct: 1 MKITKYRTKKSLGQCFILDPAIAEKIVSYAGCLEQYNVIEVGPGLGIMTQSILNKEVRRL 60
Query: 78 VLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN 137
IEKD R + L +A D++ ++ + S+ +++I N
Sbjct: 61 TAIEKDRRLSNIHSKLKEAHA-EYDCIFEDILDVNIEQLLSQS----------PLKMISN 109
Query: 138 LPFNVSTPLIIKWI 151
LP+N+S L++K +
Sbjct: 110 LPYNISVILLLKLL 123
>gi|58698105|ref|ZP_00373028.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
ananassae]
gi|58535351|gb|EAL59427.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
ananassae]
Length = 288
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARL 77
+K + L+ K L QNF+ +T KIV AG++ V E+GPG G++TR IL P L
Sbjct: 17 MKKFLLKPKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSL 76
Query: 78 VLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN 137
+ IEKD D L D + T + + +++I N
Sbjct: 77 LSIEKDRDLVKHHDQLLNEHQGKYRIIEADALHVTEEELIER-----------PVKVIAN 125
Query: 138 LPFNVSTPLIIKWIQAI 154
LP+N+S L +KW+ I
Sbjct: 126 LPYNISVVLFLKWLNNI 142
>gi|313111762|ref|ZP_07797555.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
39016]
gi|386068487|ref|YP_005983791.1| dimethyladenosine transferase [Pseudomonas aeruginosa NCGM2.S1]
gi|421165470|ref|ZP_15623798.1| dimethyladenosine transferase [Pseudomonas aeruginosa ATCC 700888]
gi|310884057|gb|EFQ42651.1| rRNA (adenine-N6,N6)-dimethyltransferase [Pseudomonas aeruginosa
39016]
gi|348037046|dbj|BAK92406.1| dimethyladenosine transferase [Pseudomonas aeruginosa NCGM2.S1]
gi|404541683|gb|EKA51034.1| dimethyladenosine transferase [Pseudomonas aeruginosa ATCC 700888]
Length = 268
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLV 78
+LY+ RA K+ QNFL + + +I+R G + E+GPG G++T +L ARL
Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLG-SGARLD 61
Query: 79 LIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138
+IE D P L L H GD + F ++ + +R++GNL
Sbjct: 62 VIELDQDLIPLLK-LKFGLESRFSLHQGDALKFDFTSLVESGEK---------LRVVGNL 111
Query: 139 PFNVSTPLIIKWIQ 152
P+N+STPLI ++
Sbjct: 112 PYNISTPLIFHLLE 125
>gi|311070689|ref|YP_003975612.1| dimethyladenosine transferase [Bacillus atrophaeus 1942]
gi|419823447|ref|ZP_14346994.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus atrophaeus C89]
gi|310871206|gb|ADP34681.1| dimethyladenosine transferase [Bacillus atrophaeus 1942]
gi|388472420|gb|EIM09196.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus atrophaeus C89]
Length = 292
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + D+IV +AG V E+GPG G++T L +R
Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQ-LAKRA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ V DV+ ++ + E++ D E I
Sbjct: 71 KQVVAFEIDQRLLPILKDTLSPYDNVTVIHQ--DVLKADVRTVI-EEQFHDCDE----IM 123
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
++ NLP+ V+TP+I+K ++ ENL L + ER P S +E+G
Sbjct: 124 VVANLPYYVTTPIIMKLLE---ENLPLKGIVVMLQKEVAERMAADP-------SSKEYGS 173
Query: 194 ICLAYRDMCE 203
+ +A + E
Sbjct: 174 LSIAVQFYTE 183
>gi|289423351|ref|ZP_06425159.1| dimethyladenosine transferase [Peptostreptococcus anaerobius 653-L]
gi|429728453|ref|ZP_19263176.1| dimethyladenosine transferase [Peptostreptococcus anaerobius VPI
4330]
gi|289156282|gb|EFD04939.1| dimethyladenosine transferase [Peptostreptococcus anaerobius 653-L]
gi|429149682|gb|EKX92653.1| dimethyladenosine transferase [Peptostreptococcus anaerobius VPI
4330]
Length = 293
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 83/147 (56%), Gaps = 10/147 (6%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RL + +I+K + + K L QNFL + + DKIV + G++V EVGPG G++T
Sbjct: 4 RLSSHKATMEIVKKHDFKFTKSLGQNFLIDDNIIDKIVDGSLAGQGDKVIEVGPGIGTLT 63
Query: 67 RSILNRRPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
R L R +++++E D + P L D L+ + D+M ++++ ++
Sbjct: 64 RE-LASRSEKVMVVEIDKKLIPILGDTLSDFDNVTIVNE--DIMKADIKDLIDKNL---- 116
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQ 152
+G P ++++ NLP+ ++TP+I+++++
Sbjct: 117 -DGGP-VKLVANLPYYITTPIIMRFLE 141
>gi|104779701|ref|YP_606199.1| dimethyladenosine transferase [Pseudomonas entomophila L48]
gi|95108688|emb|CAK13382.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
kasugamycin resistance [Pseudomonas entomophila L48]
Length = 266
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 26/202 (12%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R G + E+GPG G++T +L A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLG-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L A H GD + F + +R ++++GNLP+
Sbjct: 64 ELDKDLVPILQH-KFAGRGNFRLHQGDALKFDFNQLGVPER---------SLKVVGNLPY 113
Query: 141 NVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 200
N+STPLI + NL+ H L ++ER P ++G++ + +
Sbjct: 114 NISTPLIFHLL--AHANLIRDMHF-MLQKEVVERMAAGP-------GGGDWGRLSIMVQY 163
Query: 201 MCEEMPGLYEYTLEDTPGDIEP 222
C E+ PG P
Sbjct: 164 HCR-----VEHLFNVGPGAFNP 180
>gi|398866845|ref|ZP_10622319.1| dimethyladenosine transferase [Pseudomonas sp. GM78]
gi|398238858|gb|EJN24579.1| dimethyladenosine transferase [Pseudomonas sp. GM78]
Length = 272
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L+ A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSIHAKAEDRLLEIGPGQGALTQGLLS-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L+ A + H GD + F ++ PG +R++GNLP
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFTSL----------NAAPGSLRVVGNLP 112
Query: 140 FNVSTPLIIKWIQ 152
+N+STPLI +
Sbjct: 113 YNISTPLIFHLLH 125
>gi|398908996|ref|ZP_10654330.1| dimethyladenosine transferase [Pseudomonas sp. GM49]
gi|398188935|gb|EJM76223.1| dimethyladenosine transferase [Pseudomonas sp. GM49]
Length = 272
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L+ A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSIHAKAEDRLLEIGPGQGALTQGLLS-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L+ A + H GD + F ++ PG +R++GNLP
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNSL----------NATPGSLRVVGNLP 112
Query: 140 FNVSTPLIIKWIQ 152
+N+STPLI +
Sbjct: 113 YNISTPLIFHLLH 125
>gi|426411834|ref|YP_007031933.1| dimethyladenosine transferase [Pseudomonas sp. UW4]
gi|426270051|gb|AFY22128.1| dimethyladenosine transferase [Pseudomonas sp. UW4]
Length = 272
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L+ A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSIHAKAEDRLLEIGPGQGALTQGLLS-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L+ A + H GD + F ++ PG +R++GNLP
Sbjct: 64 ELDKDLIPILNQ-QFADKSNFNLHQGDALKFDFNSL----------NAAPGSLRVVGNLP 112
Query: 140 FNVSTPLIIKWIQ 152
+N+STPLI +
Sbjct: 113 YNISTPLIFHLLH 125
>gi|398959140|ref|ZP_10677956.1| dimethyladenosine transferase [Pseudomonas sp. GM33]
gi|398145515|gb|EJM34296.1| dimethyladenosine transferase [Pseudomonas sp. GM33]
Length = 272
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L+ A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSIHAKAEDRLLEIGPGQGALTQGLLS-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L+ A + H GD + F ++ PG +R++GNLP
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNSL----------NAAPGSLRVVGNLP 112
Query: 140 FNVSTPLIIKWIQ 152
+N+STPLI +
Sbjct: 113 YNISTPLIFHLLH 125
>gi|226946690|ref|YP_002801763.1| dimethyladenosine transferase [Azotobacter vinelandii DJ]
gi|226721617|gb|ACO80788.1| dimethyladenosine transferase [Azotobacter vinelandii DJ]
Length = 272
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLV 78
+LY+ RA K+ QNFL + + +I+R + E+GPG G++T +L ARL
Sbjct: 3 ELYQHRARKRFGQNFLHDAGVIHRILRAIHPRADERLVEIGPGQGALTEGLLG-SGARLD 61
Query: 79 LIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP-GIRIIGN 137
+IE D P L + P H H GD + F + G P +RI+GN
Sbjct: 62 VIELDLDLIPLLKLKFGLEPR-FHLHQGDALKFDFARLC----------GTPHSLRIVGN 110
Query: 138 LPFNVSTPLIIKWIQ 152
LP+N+STPLI ++
Sbjct: 111 LPYNISTPLIFHLLE 125
>gi|229548872|ref|ZP_04437597.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 29200]
gi|255971386|ref|ZP_05421972.1| dimethyladenosine transferase [Enterococcus faecalis T1]
gi|257421180|ref|ZP_05598170.1| dimethyladenosine transferase dimethyltransferase [Enterococcus
faecalis X98]
gi|312952797|ref|ZP_07771659.1| dimethyladenosine transferase [Enterococcus faecalis TX0102]
gi|422692222|ref|ZP_16750244.1| dimethyladenosine transferase [Enterococcus faecalis TX0031]
gi|422707394|ref|ZP_16765089.1| dimethyladenosine transferase [Enterococcus faecalis TX0043]
gi|422727455|ref|ZP_16783896.1| dimethyladenosine transferase [Enterococcus faecalis TX0312]
gi|229305893|gb|EEN71889.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 29200]
gi|255962404|gb|EET94880.1| dimethyladenosine transferase [Enterococcus faecalis T1]
gi|257163004|gb|EEU92964.1| dimethyladenosine transferase dimethyltransferase [Enterococcus
faecalis X98]
gi|310629313|gb|EFQ12596.1| dimethyladenosine transferase [Enterococcus faecalis TX0102]
gi|315153008|gb|EFT97024.1| dimethyladenosine transferase [Enterococcus faecalis TX0031]
gi|315155239|gb|EFT99255.1| dimethyladenosine transferase [Enterococcus faecalis TX0043]
gi|315157566|gb|EFU01583.1| dimethyladenosine transferase [Enterococcus faecalis TX0312]
Length = 295
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 21/191 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL EP + KIV AG V EVGPG G++T L
Sbjct: 14 KEILKKYGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A++V E D R P L D L++ V V ++ E + + E P I+
Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDNVTV------VHQDVLKADLVETTNQVFQEKYP-IK 125
Query: 134 IIGNLPFNVSTPLIIKWIQA---ISENLLFPKHKRQLVVSLLERACVKPILRPY---QLS 187
++ NLP+ ++TP+++ ++++ ++E ++ + + + +R KP + Y ++
Sbjct: 126 VVANLPYYITTPIMMHFLESSLDVAEMVVMMQKE------VADRIAAKPGTKAYGSLSIA 179
Query: 188 VQEFGQICLAY 198
VQ F + +A+
Sbjct: 180 VQYFMEASVAF 190
>gi|307091868|gb|ADN28269.1| putative rRNA methyltransferase, partial [uncultured bacterium]
Length = 123
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 10/115 (8%)
Query: 39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP 98
T +I R AG + G V E+GPGPG +TR++L +++ IE+D R L+ +A+ P
Sbjct: 5 FTGRIARAAGPLDGATVIEIGPGPGGLTRALLTEGARKVIAIERDQRAIAALEEIAEHHP 64
Query: 99 CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153
+ GD + F + + +RI+ NLP+N++T L + W+ A
Sbjct: 65 GRLTIVAGDALEFDPKPLLESGP----------VRIVANLPYNIATALPVSWLTA 109
>gi|398890189|ref|ZP_10643876.1| dimethyladenosine transferase [Pseudomonas sp. GM55]
gi|398188492|gb|EJM75794.1| dimethyladenosine transferase [Pseudomonas sp. GM55]
Length = 272
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L+ A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSIHAKAEDRLLEIGPGQGALTQGLLS-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L+ A + H GD + F ++ PG +R++GNLP
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNSL----------NAAPGSLRVVGNLP 112
Query: 140 FNVSTPLIIKWIQ 152
+N+STPLI +
Sbjct: 113 YNISTPLIFHLLH 125
>gi|158321677|ref|YP_001514184.1| dimethyladenosine transferase [Alkaliphilus oremlandii OhILAs]
gi|166987688|sp|A8MK56.1|RSMA_ALKOO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|158141876|gb|ABW20188.1| dimethyladenosine transferase [Alkaliphilus oremlandii OhILAs]
Length = 287
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 12/148 (8%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
R+ ++I++ Y+ + K L QNFL + + D IV A G+ + EVGPG GS+T
Sbjct: 3 RISSPKKTKEIVQKYEFKFSKSLGQNFLIDQNILDNIVDGANVSEGDCIIEVGPGIGSLT 62
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
++I R + L +E D P L A P V DV+ + + E
Sbjct: 63 QNIAERADSVLA-VEIDKTLIPILKETLGAYPN-VEVINEDVLKLDLHKLIEEK------ 114
Query: 127 EGLPG--IRIIGNLPFNVSTPLIIKWIQ 152
PG +++I NLP+ V+TP+I+K+++
Sbjct: 115 --FPGRNVKVIANLPYYVTTPIIMKFLE 140
>gi|339485334|ref|YP_004699862.1| dimethyladenosine transferase [Pseudomonas putida S16]
gi|431800453|ref|YP_007227356.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Pseudomonas
putida HB3267]
gi|338836177|gb|AEJ10982.1| dimethyladenosine transferase [Pseudomonas putida S16]
gi|430791218|gb|AGA71413.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas putida HB3267]
Length = 266
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R G + E+GPG G++T +L A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLG-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP--GIRIIGNL 138
E D P L A H GD + F + G+P ++++GNL
Sbjct: 64 ELDKDLVPILQH-KFADRSNFRLHQGDALKFDFNQL-----------GVPPRSLKVVGNL 111
Query: 139 PFNVSTPLIIKWI 151
P+N+STPLI +
Sbjct: 112 PYNISTPLIFHLL 124
>gi|26987143|ref|NP_742568.1| dimethyladenosine transferase [Pseudomonas putida KT2440]
gi|386010061|ref|YP_005928338.1| KsgA [Pseudomonas putida BIRD-1]
gi|395446781|ref|YP_006387034.1| dimethyladenosine transferase [Pseudomonas putida ND6]
gi|397694911|ref|YP_006532792.1| Dimethyladenosine transferase [Pseudomonas putida DOT-T1E]
gi|421524947|ref|ZP_15971568.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas putida LS46]
gi|33516928|sp|Q88QT6.1|RSMA_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|24981775|gb|AAN66032.1|AE016232_5 dimethyladenosine transferase [Pseudomonas putida KT2440]
gi|313496767|gb|ADR58133.1| KsgA [Pseudomonas putida BIRD-1]
gi|388560778|gb|AFK69919.1| dimethyladenosine transferase [Pseudomonas putida ND6]
gi|397331641|gb|AFO48000.1| Dimethyladenosine transferase [Pseudomonas putida DOT-T1E]
gi|402751410|gb|EJX11923.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas putida LS46]
Length = 267
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R G + E+GPG G++T +L A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLG-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP--GIRIIGNL 138
E D P L A H GD + F + G+P ++++GNL
Sbjct: 64 ELDKDLVPILQH-KFADRSNFRLHQGDALKFDFNQL-----------GVPPRSLKVVGNL 111
Query: 139 PFNVSTPLIIKWI 151
P+N+STPLI +
Sbjct: 112 PYNISTPLIFHLL 124
>gi|398873142|ref|ZP_10628407.1| dimethyladenosine transferase [Pseudomonas sp. GM74]
gi|398200427|gb|EJM87339.1| dimethyladenosine transferase [Pseudomonas sp. GM74]
Length = 269
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 13/133 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L+ A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSIHAKAEDRLLEIGPGQGALTQGLLS-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L+ + + H GD + F ++ +PG +R++GNLP
Sbjct: 64 ELDKDLIPILNQ-QFSGKSNFNLHQGDALKFDFNSL----------NAVPGSLRVVGNLP 112
Query: 140 FNVSTPLIIKWIQ 152
+N+STPLI +
Sbjct: 113 YNISTPLIFHLLH 125
>gi|148545687|ref|YP_001265789.1| dimethyladenosine transferase [Pseudomonas putida F1]
gi|148509745|gb|ABQ76605.1| dimethyladenosine transferase [Pseudomonas putida F1]
Length = 267
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R G + E+GPG G++T +L A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLG-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP--GIRIIGNL 138
E D P L A H GD + F + G+P ++++GNL
Sbjct: 64 ELDKDLVPILHH-KFADRSNFRLHQGDALKFDFNQL-----------GVPPRSLKVVGNL 111
Query: 139 PFNVSTPLIIKWI 151
P+N+STPLI +
Sbjct: 112 PYNISTPLIFHLL 124
>gi|398967697|ref|ZP_10682047.1| dimethyladenosine transferase [Pseudomonas sp. GM30]
gi|398144458|gb|EJM33290.1| dimethyladenosine transferase [Pseudomonas sp. GM30]
Length = 272
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ + + E+GPG G++T ILN A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSISAKPDDRMLEIGPGQGALTAGILN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A + H GD + F + + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNTLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI +
Sbjct: 114 NISTPLIFHLLN 125
>gi|373469368|ref|ZP_09560560.1| dimethyladenosine transferase [Lachnospiraceae bacterium oral taxon
082 str. F0431]
gi|371764542|gb|EHO52939.1| dimethyladenosine transferase [Lachnospiraceae bacterium oral taxon
082 str. F0431]
Length = 294
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 6/154 (3%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
M K ++ + DIIK Y K+ QNFL + + DKI +G + E+GP
Sbjct: 1 MEIKMTKIANPANTIDIIKKYDFNFQKKFGQNFLIDTHVLDKICAESGLKENDLAIEIGP 60
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSE 119
G G++T+ + N A +V IE D P LD LA + D + ++N+ E
Sbjct: 61 GIGALTQYLANAAKA-VVAIEIDKNLLPILDETLADYKNTSIIN--ADFLKIDLENLIDE 117
Query: 120 DRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153
R++ + E IRI+ NLP+ ++TP+I+ +++
Sbjct: 118 CRQK-YGE-FENIRIVANLPYYITTPIIMNVLES 149
>gi|365826187|ref|ZP_09368133.1| hypothetical protein HMPREF0045_01769 [Actinomyces graevenitzii
C83]
gi|365257120|gb|EHM87184.1| hypothetical protein HMPREF0045_01769 [Actinomyces graevenitzii
C83]
Length = 689
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 12/141 (8%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
IR++ +R K L QNF+ +P KIVRNAG G +V E+GPG GS+T ++L
Sbjct: 15 IRELCAQLNIRPTKTLGQNFVNDPGTVRKIVRNAGVQAGEQVLEIGPGLGSLTLALLEAG 74
Query: 74 PARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
A++ +E DP L AQA + D ++ T G
Sbjct: 75 -AQVSAVEIDPPLAQALPTTAQARFPEAKLQVFTADALTITGPESIG---------GTTP 124
Query: 132 IRIIGNLPFNVSTPLIIKWIQ 152
+R++ NLP+NV+ P+++ ++
Sbjct: 125 VRLVANLPYNVAVPIVLTVLE 145
>gi|374703444|ref|ZP_09710314.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. S9]
Length = 273
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + +I+R + E+GPG G++T +LN A+L +I
Sbjct: 5 YQHRARKRFGQNFLHDAGVIHRILRAIHAKEAEHLLEIGPGQGALTEGLLN-SGAQLDVI 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L + P + GD + F Q + ++ R +R++GNLP+
Sbjct: 64 ELDKDLIPILQAKFGSQPR-FRLNQGDALKFDFQRLEAQPR---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI + S
Sbjct: 114 NISTPLIFHLLDNAS 128
>gi|398937173|ref|ZP_10667212.1| dimethyladenosine transferase [Pseudomonas sp. GM41(2012)]
gi|398167156|gb|EJM55236.1| dimethyladenosine transferase [Pseudomonas sp. GM41(2012)]
Length = 272
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R + + E+GPG G++T+ +LN A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRAIRAKPEDRLLEIGPGQGALTQGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ AS H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFASKSNFSLHQGDALKFDFTSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI + S
Sbjct: 114 NISTPLIFHLLHNAS 128
>gi|58696723|ref|ZP_00372268.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
simulans]
gi|58537091|gb|EAL60211.1| dimethyladenosine transferase [Wolbachia endosymbiont of Drosophila
simulans]
Length = 313
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARL 77
+K + L+ K L QNF+ +T KIV AG++ V E+GPG G++TR IL P L
Sbjct: 1 MKKFLLKPKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSL 60
Query: 78 VLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN 137
+ IEKD D L D + T + + +++I N
Sbjct: 61 LSIEKDRDLVKHHDQLLNEHQGKYRIIEADALHVTEEELIER-----------PVKVIAN 109
Query: 138 LPFNVSTPLIIKWIQ 152
LP+N+S L +KW+
Sbjct: 110 LPYNISVVLFLKWLN 124
>gi|410696710|gb|AFV75778.1| dimethyladenosine transferase [Thermus oshimai JL-2]
Length = 274
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 20/146 (13%)
Query: 11 MPSIRD----IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
MPS+R+ ++ + L+A K+ QNFL E +IV A TG V EVGPG G +T
Sbjct: 1 MPSLREEVRTLLHRHGLKADKRFGQNFLVEEAYLKRIVEAAQPFTGP-VYEVGPGLGFLT 59
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
R+ L + AR+ IEKD R P L+ P + F D + F W
Sbjct: 60 RA-LAQAGARVTAIEKDLRLKPVLEETLAGLPVELRFQ--DALRF------------PWR 104
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQ 152
E G ++ NLP+N++TPL+ + ++
Sbjct: 105 EVPEGSLLVANLPYNIATPLVTELLK 130
>gi|398844539|ref|ZP_10601601.1| dimethyladenosine transferase [Pseudomonas sp. GM84]
gi|398254476|gb|EJN39571.1| dimethyladenosine transferase [Pseudomonas sp. GM84]
Length = 266
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R G + E+GPG G++T +L A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLG-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG--IRIIGNL 138
E D P L A H GD + F + G+P ++++GNL
Sbjct: 64 ELDKDLVPILQH-KFAGRDNFRLHQGDALKFDFNQL-----------GVPARSLKVVGNL 111
Query: 139 PFNVSTPLIIKWI 151
P+N+STPLI +
Sbjct: 112 PYNISTPLIFHLL 124
>gi|255994696|ref|ZP_05427831.1| dimethyladenosine transferase [Eubacterium saphenum ATCC 49989]
gi|255993409|gb|EEU03498.1| dimethyladenosine transferase [Eubacterium saphenum ATCC 49989]
Length = 285
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 77/139 (55%), Gaps = 14/139 (10%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
+I+ + + +R K+ QNFL + + KI +AG + + V E+GPG G++TR I ++
Sbjct: 12 TIKQLCDCFDIRPNKRYGQNFLIDYNIVQKITDSAGLTSSDRVLEIGPGIGTLTREI-SK 70
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
+ +V++E D + P LD + S C + Q++F + D+ L +
Sbjct: 71 KAGSVVVVEVDKKLIPVLD--STLSHCS-------NIKIVNQDIFKYNVGDDF---LDTV 118
Query: 133 RIIGNLPFNVSTPLIIKWI 151
++IGNLP+ ++TP+++ W+
Sbjct: 119 KVIGNLPYYITTPIVM-WL 136
>gi|170723958|ref|YP_001751646.1| dimethyladenosine transferase [Pseudomonas putida W619]
gi|169761961|gb|ACA75277.1| dimethyladenosine transferase [Pseudomonas putida W619]
Length = 266
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R G + E+GPG G++T +L A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLG-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG--IRIIGNL 138
E D P L A H GD + F + G+P ++++GNL
Sbjct: 64 ELDKDLVPILQH-KFAGRDNFRLHQGDALKFDFNQL-----------GVPARSLKVVGNL 111
Query: 139 PFNVSTPLIIKWI 151
P+N+STPLI +
Sbjct: 112 PYNISTPLIFHLL 124
>gi|398875249|ref|ZP_10630427.1| dimethyladenosine transferase [Pseudomonas sp. GM67]
gi|398883045|ref|ZP_10638006.1| dimethyladenosine transferase [Pseudomonas sp. GM60]
gi|398197618|gb|EJM84594.1| dimethyladenosine transferase [Pseudomonas sp. GM60]
gi|398208179|gb|EJM94917.1| dimethyladenosine transferase [Pseudomonas sp. GM67]
Length = 272
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ + + E+GPG G++T+ +LN A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLLN-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A + H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI +
Sbjct: 114 NISTPLIFHLLH 125
>gi|167031448|ref|YP_001666679.1| dimethyladenosine transferase [Pseudomonas putida GB-1]
gi|166857936|gb|ABY96343.1| dimethyladenosine transferase [Pseudomonas putida GB-1]
Length = 266
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R G + E+GPG G++T +L A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRAINAKAGEHLLEIGPGQGALTEGLLG-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP--GIRIIGNL 138
E D P L A H GD + F + G+P ++++GNL
Sbjct: 64 ELDKDLVPILQH-KFADRGNFRLHQGDALKFDFNQL-----------GVPPRSLKVVGNL 111
Query: 139 PFNVSTPLIIKWI 151
P+N+STPLI +
Sbjct: 112 PYNISTPLIFHLL 124
>gi|404398415|ref|ZP_10989999.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas fuscovaginae UPB0736]
Length = 272
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 26/202 (12%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R + + + E+GPG G++T +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRAIRAKSEDRMLEIGPGQGALTEGLLS-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ + P H GD + F + + +R++GNLP+
Sbjct: 64 ELDKDLVPILNQQFASKPN-FQLHQGDALKFDFTTLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 200
N+STPLI + + NL+ H L ++ER P ++G++ + +
Sbjct: 114 NISTPLIFHLLN--NANLIRDMHF-MLQKEVVERLAAGP-------GGGDWGRLSIMVQY 163
Query: 201 MCEEMPGLYEYTLEDTPGDIEP 222
C E+ PG P
Sbjct: 164 HCR-----VEHLFNVGPGAFNP 180
>gi|334134055|ref|ZP_08507584.1| dimethyladenosine transferase [Paenibacillus sp. HGF7]
gi|333608402|gb|EGL19700.1| dimethyladenosine transferase [Paenibacillus sp. HGF7]
Length = 306
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 17/189 (8%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI+ + L K L QNFL + + I+ A E+GPG G++T+ L +
Sbjct: 24 KDILNRHNLVLKKSLGQNFLTDGNVLRNIISAAELAPEKGALEIGPGIGALTQQ-LAKEA 82
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
R+V +E D R P L P H GDV+ ++ + E GL GI +
Sbjct: 83 GRVVAVEIDQRLLPILRETLSPYPTAEVVH-GDVLKLDLRQLIEEK-----FSGLSGISV 136
Query: 135 IGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQI 194
+ NLP+ ++TP+I+K ++ E L + + +R KP +E+G +
Sbjct: 137 VANLPYYITTPIIMKLLE---EKLPLENIVVMIQKEVADRMAAKP-------GGKEYGSL 186
Query: 195 CLAYRDMCE 203
+A + CE
Sbjct: 187 SIAVQFYCE 195
>gi|398309127|ref|ZP_10512601.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus mojavensis RO-H-1]
Length = 292
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + D+IV +A V E+GPG G++T L +R
Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQ-LAKRA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ V DV+ ++++ E++ +D E +
Sbjct: 71 KKVVAFEIDQRLLPILKDTLSPYDNVTVIHQ--DVLKADVKSVI-EEQFKDCDE----VM 123
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
++ NLP+ V+TP+I+K ++ ENL L + ER P S +E+G
Sbjct: 124 VVANLPYYVTTPIIMKLLE---ENLPLKGIVVMLQKEVAERMAADP-------SSKEYGS 173
Query: 194 ICLAYRDMCE 203
+ +A + E
Sbjct: 174 LSIAVQFYTE 183
>gi|422868710|ref|ZP_16915248.1| dimethyladenosine transferase [Enterococcus faecalis TX1467]
gi|329574115|gb|EGG55692.1| dimethyladenosine transferase [Enterococcus faecalis TX1467]
Length = 295
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 21/191 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K + K L QNFL EP + KIV AG V EVGPG G++T L
Sbjct: 14 KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A++V E D R P L D L++ V V ++ E + + E P I+
Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDNVTV------VHQDVLKADLVETTNQAFQEKYP-IK 125
Query: 134 IIGNLPFNVSTPLIIKWIQA---ISENLLFPKHKRQLVVSLLERACVKPILRPY---QLS 187
++ NLP+ ++TP+++ ++++ ++E ++ + + + +R KP + Y ++
Sbjct: 126 VVANLPYYITTPIMMHFLESSLDVAEMVVMMQKE------VADRIAAKPGTKAYGSLSIA 179
Query: 188 VQEFGQICLAY 198
VQ F + +A+
Sbjct: 180 VQYFMEASVAF 190
>gi|357014629|ref|ZP_09079628.1| RsmA [Paenibacillus elgii B69]
Length = 306
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+++I+ Y K L QNFL + + KIV A + E+GPG G++T+ L +
Sbjct: 24 KELIQKYGFTLKKSLGQNFLIDQNILTKIVSAAELDSDKGALEIGPGIGALTQQ-LAKTA 82
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
R+V +E D R P L + P H GDV+ ++ +F E RD S+ + +
Sbjct: 83 GRVVAVEIDQRLLPMLKETLEPYPHVSVVH-GDVLKTDIRELF-EAHFRDVSK----VSV 136
Query: 135 IGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQI 194
+ NLP+ V+TP+++K ++ E L + + +R KP +++G +
Sbjct: 137 VANLPYYVTTPIVMKLLE---EKLPLEHIVVMIQKEVADRMAAKP-------GGKDYGSL 186
Query: 195 CLAYRDMCE 203
+A + CE
Sbjct: 187 SIAVQYYCE 195
>gi|27151614|sp|Q9RU68.2|RSMA_DEIRA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
Length = 292
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 20/161 (12%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R ++ + L+ K L QNFL + + I G G V E+GPG G +TR + +R
Sbjct: 28 VRALLAAHGLKPTKSLGQNFLIDGNILRAIAEAGGAAPGENVLEIGPGLGVLTREVASRG 87
Query: 74 PARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
AR+ +EKD R P L + LA V+ GD + F D++ G
Sbjct: 88 -ARVTALEKDERLRPVLAETLAG---LDVNVIWGDALDF------------DYAALPAGT 131
Query: 133 RIIGNLPFNVSTPLIIKWIQA---ISENLLFPKHKRQLVVS 170
R+I NLP+ ++ L+ +++QA +S +L K Q +V+
Sbjct: 132 RVIANLPYYITGLLLTRFMQAPGVVSATVLVQKEVAQRLVA 172
>gi|357053349|ref|ZP_09114445.1| ribosomal RNA small subunit methyltransferase A [Clostridium
clostridioforme 2_1_49FAA]
gi|355385824|gb|EHG32872.1| ribosomal RNA small subunit methyltransferase A [Clostridium
clostridioforme 2_1_49FAA]
Length = 295
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 8/138 (5%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
+II+ Y+ K+ QNFL + R+ DKI+ AG + V E+GPG G++T+ L
Sbjct: 12 EIIQKYQFAFQKKFGQNFLIDTRVLDKIISAAGITEDDCVLEIGPGIGTMTQ-YLAEHAG 70
Query: 76 RLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII 135
++V +E D P LD + P V D++ M + E +++G P I++
Sbjct: 71 KVVAVEIDTNLLPILDETLKGYPN-VTVINSDILKLDMNKLVDE-----YNDGRP-IKVA 123
Query: 136 GNLPFNVSTPLIIKWIQA 153
NLP+ ++TP+I+ ++
Sbjct: 124 ANLPYYITTPIIMGLFES 141
>gi|134297956|ref|YP_001111452.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1]
gi|134050656|gb|ABO48627.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1]
Length = 293
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 2/140 (1%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
++DII Y R K L QNFL + + DKIV A G+ V E+GPG G +T+ L R
Sbjct: 10 VKDIINTYGFRVRKALGQNFLMDANIIDKIVNAAELTPGDLVFEIGPGLGVLTQR-LARS 68
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++ +E D P L H D + + +E + +G +
Sbjct: 69 AGKVIAVEIDKNLLPILTETLTDFDNAQVVH-ADALKVDFDRLAAEHTEGGFGKGAKSFK 127
Query: 134 IIGNLPFNVSTPLIIKWIQA 153
++ NLP+ ++TP+++ + +
Sbjct: 128 LVANLPYYITTPILMHLLTS 147
>gi|399911996|ref|ZP_10780310.1| dimethyladenosine transferase [Halomonas sp. KM-1]
Length = 270
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL +P + +IVR G+ + E+GPG G++T ++ +L +IE D
Sbjct: 9 RARKRFGQNFLRDPGIISRIVRAIAPRPGDRLVEIGPGQGALTEPLIESAGGQLEVIELD 68
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L + P V H GD + F D R +G P +R++GNLP+N+S
Sbjct: 69 RDLIPGLRVQFFNYPGFV-VHEGDALKF--------DFRALRGDGEP-LRVVGNLPYNIS 118
Query: 144 TPLIIKWIQA 153
TPLI ++A
Sbjct: 119 TPLIAHLLEA 128
>gi|220933005|ref|YP_002509913.1| dimethyladenosine transferase [Halothermothrix orenii H 168]
gi|254807869|sp|B8D0I2.1|RSMA_HALOH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|219994315|gb|ACL70918.1| dimethyladenosine transferase [Halothermothrix orenii H 168]
Length = 301
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 21/191 (10%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
+II+ Y L+ K L QNFL + + DKI+ A + V E+GPG GS+T+ I+ R
Sbjct: 13 EIIRKYNLKLHKGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVP-RSG 71
Query: 76 RLVLIEKDPRFTPCLDMLAQASPCPVHFHL----GDVMSFTMQNMFSEDRRRDWSEGLPG 131
R+ EKD R L L + HL DV+ ++ F D S
Sbjct: 72 RVFAFEKDKRLVKVLRELFNG-----YNHLEVIGQDVLEVDWKHFFDSRGISDRS----- 121
Query: 132 IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSV 188
++++ NLP+ ++TP+I+ +++ N+ F + + +R P + Y ++V
Sbjct: 122 VKVLANLPYYITTPVIMGLLES---NITFSLMVLMVQKEVADRMAAAPGSKDYGALSVAV 178
Query: 189 QEFGQICLAYR 199
Q +G++ + ++
Sbjct: 179 QYYGEVEIFHK 189
>gi|429220484|ref|YP_007182128.1| dimethyladenosine transferase [Deinococcus peraridilitoris DSM
19664]
gi|429131347|gb|AFZ68362.1| dimethyladenosine transferase [Deinococcus peraridilitoris DSM
19664]
Length = 275
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 15/141 (10%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
++RD++ + LR K L QNFL + + I G G V EVGPG G +TR +
Sbjct: 12 TVRDLLARHGLRPTKSLGQNFLVDGNVLRAIAEAGGAKPGESVVEVGPGLGVLTRE-MAL 70
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
R A + +EKD R P L S V GD + F Q++ G
Sbjct: 71 RGAHVTALEKDERLRPVLQ--ETLSGLDVRVVWGDALKFDYQSVPE------------GS 116
Query: 133 RIIGNLPFNVSTPLIIKWIQA 153
R+I NLP+ +ST L+ +++++
Sbjct: 117 RVIANLPYYISTALLTRFMES 137
>gi|227486185|ref|ZP_03916501.1| dimethyladenosine transferase [Anaerococcus lactolyticus ATCC
51172]
gi|227235816|gb|EEI85831.1| dimethyladenosine transferase [Anaerococcus lactolyticus ATCC
51172]
Length = 280
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 13/141 (9%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
++DII LY R K L QNFL + DKIV A I G V EVGPG G+I+ + +
Sbjct: 10 VKDIIDLYGFRFSKSLGQNFLIDKNFVDKIVEGAD-IAGKNVIEVGPGIGTISYE-MAKT 67
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-- 131
+LVLIE D P L+ + D ++ Q++ D ++ E G
Sbjct: 68 CKKLVLIEIDSSLIPILEE---------NMSDFDNVTIIHQDILKTDLKKIQDEYFGGEA 118
Query: 132 IRIIGNLPFNVSTPLIIKWIQ 152
+ NLP+ ++TP+I K +
Sbjct: 119 FDFVSNLPYYITTPIIEKIFE 139
>gi|325912354|ref|ZP_08174750.1| dimethyladenosine transferase [Lactobacillus iners UPII 143-D]
gi|325475825|gb|EGC78995.1| dimethyladenosine transferase [Lactobacillus iners UPII 143-D]
Length = 295
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 8/143 (5%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R I+ Y ++A K L QNFL + + KI+ +AG + ++V E+GPG GS+T +L
Sbjct: 14 RAIVNRYFMKAKKSLGQNFLVDLPIVKKIIASAGVVECSQVIEIGPGIGSLTEQLL-LAG 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPV-HFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-- 131
A+++ E DP D+L P + ++ L D M+++ D D ++
Sbjct: 73 AKVLAYEVDPDLP---DILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNQ 129
Query: 132 -IRIIGNLPFNVSTPLIIKWIQA 153
I ++ NLP+ ++TP+I+K + +
Sbjct: 130 PIIVVANLPYYITTPIILKLMHS 152
>gi|229546781|ref|ZP_04435506.1| dimethyladenosine transferase [Enterococcus faecalis TX1322]
gi|256854221|ref|ZP_05559585.1| dimethyladenosine transferase [Enterococcus faecalis T8]
gi|307290952|ref|ZP_07570842.1| dimethyladenosine transferase [Enterococcus faecalis TX0411]
gi|422685513|ref|ZP_16743729.1| dimethyladenosine transferase [Enterococcus faecalis TX4000]
gi|229308130|gb|EEN74117.1| dimethyladenosine transferase [Enterococcus faecalis TX1322]
gi|256709781|gb|EEU24825.1| dimethyladenosine transferase [Enterococcus faecalis T8]
gi|306498022|gb|EFM67549.1| dimethyladenosine transferase [Enterococcus faecalis TX0411]
gi|315029806|gb|EFT41738.1| dimethyladenosine transferase [Enterococcus faecalis TX4000]
Length = 295
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 21/191 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K + K L QNFL EP + KIV AG V EVGPG G++T L
Sbjct: 14 KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A++V E D R P L D L++ V V ++ E + + E P I+
Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDNVTV------VHQDVLKADLVETTNQVFQEKYP-IK 125
Query: 134 IIGNLPFNVSTPLIIKWIQA---ISENLLFPKHKRQLVVSLLERACVKPILRPY---QLS 187
++ NLP+ ++TP+++ ++++ ++E ++ + + + +R KP + Y ++
Sbjct: 126 VVANLPYYITTPIMMHFLESSLDVAEMVVMMQKE------VADRIAAKPGTKAYGSLSIA 179
Query: 188 VQEFGQICLAY 198
VQ F + +A+
Sbjct: 180 VQYFMEASVAF 190
>gi|15806536|ref|NP_295249.1| dimethyladenosine transferase [Deinococcus radiodurans R1]
gi|6459288|gb|AAF11091.1|AE001996_6 dimethyladenosine transferase [Deinococcus radiodurans R1]
Length = 336
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 20/161 (12%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R ++ + L+ K L QNFL + + I G G V E+GPG G +TR + +R
Sbjct: 72 VRALLAAHGLKPTKSLGQNFLIDGNILRAIAEAGGAAPGENVLEIGPGLGVLTREVASRG 131
Query: 74 PARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
AR+ +EKD R P L + LA V+ GD + F D++ G
Sbjct: 132 -ARVTALEKDERLRPVLAETLAGLD---VNVIWGDALDF------------DYAALPAGT 175
Query: 133 RIIGNLPFNVSTPLIIKWIQA---ISENLLFPKHKRQLVVS 170
R+I NLP+ ++ L+ +++QA +S +L K Q +V+
Sbjct: 176 RVIANLPYYITGLLLTRFMQAPGVVSATVLVQKEVAQRLVA 216
>gi|326789765|ref|YP_004307586.1| dimethyladenosine transferase [Clostridium lentocellum DSM 5427]
gi|326540529|gb|ADZ82388.1| dimethyladenosine transferase [Clostridium lentocellum DSM 5427]
Length = 288
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 16/150 (10%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
++ + R II Y K+ QNFL +P++ DKI+ A + V E+GPG G +T
Sbjct: 3 KIATVEGTRAIISKYPFAFQKKFGQNFLIDPQVLDKIIDAAEITKEDCVIEIGPGIGCVT 62
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHL--GDVMSFTMQNMFSED--RR 122
+++L + +++ IE D + P L+ A P HF L DV+ + + +E+ R
Sbjct: 63 QALL-EKAGKVISIEIDNQLIPILEEQFGAEP---HFKLIHNDVLKVDLAALIAEESPNR 118
Query: 123 RDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ 152
R I+++ NLP+ ++TP+I+ ++
Sbjct: 119 R--------IKVVANLPYYITTPIIMALLE 140
>gi|430757309|ref|YP_007211215.1| Dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430021829|gb|AGA22435.1| Dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. BSP1]
Length = 292
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + ++IV +A V E+GPG G++T L +R
Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQ-LAKRA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ V H DV+ ++++ E++ +D E I
Sbjct: 71 KKVVAFEIDQRLLPILKDTLSPYDNVTVIHH--DVLKADVKSVI-EEQFQDCDE----IM 123
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
++ NLP+ V+TP+I+K ++ E+L L + ER P S +E+G
Sbjct: 124 VVANLPYYVTTPIIMKLLE---EHLPLKGIVVMLQKEVAERMAADP-------SSKEYGS 173
Query: 194 ICLAYRDMCE 203
+ +A + E
Sbjct: 174 LSIAVQFYTE 183
>gi|29375520|ref|NP_814674.1| dimethyladenosine transferase [Enterococcus faecalis V583]
gi|227517856|ref|ZP_03947905.1| dimethyladenosine transferase [Enterococcus faecalis TX0104]
gi|227555047|ref|ZP_03985094.1| dimethyladenosine transferase [Enterococcus faecalis HH22]
gi|255974004|ref|ZP_05424590.1| dimethyladenosine transferase [Enterococcus faecalis T2]
gi|256617805|ref|ZP_05474651.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 4200]
gi|256761690|ref|ZP_05502270.1| dimethyladenosine transferase [Enterococcus faecalis T3]
gi|256957208|ref|ZP_05561379.1| dimethyladenosine transferase [Enterococcus faecalis DS5]
gi|257077820|ref|ZP_05572181.1| dimethyladenosine transferase [Enterococcus faecalis JH1]
gi|257083847|ref|ZP_05578208.1| dimethyladenosine transferase [Enterococcus faecalis Fly1]
gi|257086272|ref|ZP_05580633.1| dimethyladenosine transferase [Enterococcus faecalis D6]
gi|257089346|ref|ZP_05583707.1| dimethyladenosine transferase [Enterococcus faecalis CH188]
gi|257415498|ref|ZP_05592492.1| dimethyladenosine transferase [Enterococcus faecalis ARO1/DG]
gi|257418530|ref|ZP_05595524.1| dimethyladenosine transferase [Enterococcus faecalis T11]
gi|293383814|ref|ZP_06629721.1| dimethyladenosine transferase [Enterococcus faecalis R712]
gi|293388710|ref|ZP_06633203.1| dimethyladenosine transferase [Enterococcus faecalis S613]
gi|294780523|ref|ZP_06745886.1| dimethyladenosine transferase [Enterococcus faecalis PC1.1]
gi|300859868|ref|ZP_07105956.1| dimethyladenosine transferase [Enterococcus faecalis TUSoD Ef11]
gi|307268011|ref|ZP_07549399.1| dimethyladenosine transferase [Enterococcus faecalis TX4248]
gi|307275353|ref|ZP_07556496.1| dimethyladenosine transferase [Enterococcus faecalis TX2134]
gi|307278369|ref|ZP_07559444.1| dimethyladenosine transferase [Enterococcus faecalis TX0860]
gi|307286744|ref|ZP_07566830.1| dimethyladenosine transferase [Enterococcus faecalis TX0109]
gi|312901521|ref|ZP_07760795.1| dimethyladenosine transferase [Enterococcus faecalis TX0470]
gi|312904496|ref|ZP_07763655.1| dimethyladenosine transferase [Enterococcus faecalis TX0635]
gi|312906970|ref|ZP_07765966.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 512]
gi|312978773|ref|ZP_07790500.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 516]
gi|384512627|ref|YP_005707720.1| dimethyladenosine transferase [Enterococcus faecalis OG1RF]
gi|397699326|ref|YP_006537114.1| dimethyladenosine transferase [Enterococcus faecalis D32]
gi|422689708|ref|ZP_16747812.1| dimethyladenosine transferase [Enterococcus faecalis TX0630]
gi|422694536|ref|ZP_16752527.1| dimethyladenosine transferase [Enterococcus faecalis TX4244]
gi|422698022|ref|ZP_16755946.1| dimethyladenosine transferase [Enterococcus faecalis TX1346]
gi|422699494|ref|ZP_16757358.1| dimethyladenosine transferase [Enterococcus faecalis TX1342]
gi|422703372|ref|ZP_16761194.1| dimethyladenosine transferase [Enterococcus faecalis TX1302]
gi|422711717|ref|ZP_16768644.1| dimethyladenosine transferase [Enterococcus faecalis TX0027]
gi|422713418|ref|ZP_16770168.1| dimethyladenosine transferase [Enterococcus faecalis TX0309A]
gi|422717556|ref|ZP_16774240.1| dimethyladenosine transferase [Enterococcus faecalis TX0309B]
gi|422720299|ref|ZP_16776917.1| dimethyladenosine transferase [Enterococcus faecalis TX0017]
gi|422722865|ref|ZP_16779414.1| dimethyladenosine transferase [Enterococcus faecalis TX2137]
gi|422729923|ref|ZP_16786318.1| dimethyladenosine transferase [Enterococcus faecalis TX0012]
gi|422735257|ref|ZP_16791531.1| dimethyladenosine transferase [Enterococcus faecalis TX1341]
gi|422738315|ref|ZP_16793514.1| dimethyladenosine transferase [Enterococcus faecalis TX2141]
gi|424671062|ref|ZP_18108077.1| dimethyladenosine transferase [Enterococcus faecalis 599]
gi|424676365|ref|ZP_18113239.1| dimethyladenosine transferase [Enterococcus faecalis ERV103]
gi|424679290|ref|ZP_18116116.1| dimethyladenosine transferase [Enterococcus faecalis ERV116]
gi|424682962|ref|ZP_18119719.1| dimethyladenosine transferase [Enterococcus faecalis ERV129]
gi|424685715|ref|ZP_18122405.1| dimethyladenosine transferase [Enterococcus faecalis ERV25]
gi|424689189|ref|ZP_18125778.1| dimethyladenosine transferase [Enterococcus faecalis ERV31]
gi|424692870|ref|ZP_18129342.1| dimethyladenosine transferase [Enterococcus faecalis ERV37]
gi|424695670|ref|ZP_18132050.1| dimethyladenosine transferase [Enterococcus faecalis ERV41]
gi|424700405|ref|ZP_18136595.1| dimethyladenosine transferase [Enterococcus faecalis ERV62]
gi|424702851|ref|ZP_18138993.1| dimethyladenosine transferase [Enterococcus faecalis ERV63]
gi|424712053|ref|ZP_18144247.1| dimethyladenosine transferase [Enterococcus faecalis ERV65]
gi|424717379|ref|ZP_18146672.1| dimethyladenosine transferase [Enterococcus faecalis ERV68]
gi|424719604|ref|ZP_18148748.1| dimethyladenosine transferase [Enterococcus faecalis ERV72]
gi|424723383|ref|ZP_18152365.1| dimethyladenosine transferase [Enterococcus faecalis ERV73]
gi|424726919|ref|ZP_18155567.1| dimethyladenosine transferase [Enterococcus faecalis ERV81]
gi|424735025|ref|ZP_18163502.1| dimethyladenosine transferase [Enterococcus faecalis ERV85]
gi|424748481|ref|ZP_18176626.1| dimethyladenosine transferase [Enterococcus faecalis ERV93]
gi|424757243|ref|ZP_18184997.1| dimethyladenosine transferase [Enterococcus faecalis R508]
gi|428766442|ref|YP_007152553.1| dimethyladenosine transferase [Enterococcus faecalis str.
Symbioflor 1]
gi|430358814|ref|ZP_19425574.1| dimethyladenosine transferase [Enterococcus faecalis OG1X]
gi|430367967|ref|ZP_19427949.1| dimethyladenosine transferase [Enterococcus faecalis M7]
gi|33516925|sp|Q837A7.1|RSMA_ENTFA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|29342980|gb|AAO80744.1| dimethyladenosine transferase [Enterococcus faecalis V583]
gi|227074699|gb|EEI12662.1| dimethyladenosine transferase [Enterococcus faecalis TX0104]
gi|227175834|gb|EEI56806.1| dimethyladenosine transferase [Enterococcus faecalis HH22]
gi|255966876|gb|EET97498.1| dimethyladenosine transferase [Enterococcus faecalis T2]
gi|256597332|gb|EEU16508.1| dimethyladenosine transferase [Enterococcus faecalis ATCC 4200]
gi|256682941|gb|EEU22636.1| dimethyladenosine transferase [Enterococcus faecalis T3]
gi|256947704|gb|EEU64336.1| dimethyladenosine transferase [Enterococcus faecalis DS5]
gi|256985850|gb|EEU73152.1| dimethyladenosine transferase [Enterococcus faecalis JH1]
gi|256991877|gb|EEU79179.1| dimethyladenosine transferase [Enterococcus faecalis Fly1]
gi|256994302|gb|EEU81604.1| dimethyladenosine transferase [Enterococcus faecalis D6]
gi|256998158|gb|EEU84678.1| dimethyladenosine transferase [Enterococcus faecalis CH188]
gi|257157326|gb|EEU87286.1| dimethyladenosine transferase [Enterococcus faecalis ARO1/DG]
gi|257160358|gb|EEU90318.1| dimethyladenosine transferase [Enterococcus faecalis T11]
gi|291078890|gb|EFE16254.1| dimethyladenosine transferase [Enterococcus faecalis R712]
gi|291081867|gb|EFE18830.1| dimethyladenosine transferase [Enterococcus faecalis S613]
gi|294452350|gb|EFG20789.1| dimethyladenosine transferase [Enterococcus faecalis PC1.1]
gi|300850686|gb|EFK78435.1| dimethyladenosine transferase [Enterococcus faecalis TUSoD Ef11]
gi|306502222|gb|EFM71506.1| dimethyladenosine transferase [Enterococcus faecalis TX0109]
gi|306504875|gb|EFM74070.1| dimethyladenosine transferase [Enterococcus faecalis TX0860]
gi|306507987|gb|EFM77114.1| dimethyladenosine transferase [Enterococcus faecalis TX2134]
gi|306515652|gb|EFM84179.1| dimethyladenosine transferase [Enterococcus faecalis TX4248]
gi|310626955|gb|EFQ10238.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 512]
gi|310632194|gb|EFQ15477.1| dimethyladenosine transferase [Enterococcus faecalis TX0635]
gi|311288480|gb|EFQ67036.1| dimethyladenosine transferase [Enterococcus faecalis DAPTO 516]
gi|311291421|gb|EFQ69977.1| dimethyladenosine transferase [Enterococcus faecalis TX0470]
gi|315027121|gb|EFT39053.1| dimethyladenosine transferase [Enterococcus faecalis TX2137]
gi|315032435|gb|EFT44367.1| dimethyladenosine transferase [Enterococcus faecalis TX0017]
gi|315034331|gb|EFT46263.1| dimethyladenosine transferase [Enterococcus faecalis TX0027]
gi|315145777|gb|EFT89793.1| dimethyladenosine transferase [Enterococcus faecalis TX2141]
gi|315148093|gb|EFT92109.1| dimethyladenosine transferase [Enterococcus faecalis TX4244]
gi|315149696|gb|EFT93712.1| dimethyladenosine transferase [Enterococcus faecalis TX0012]
gi|315165204|gb|EFU09221.1| dimethyladenosine transferase [Enterococcus faecalis TX1302]
gi|315167928|gb|EFU11945.1| dimethyladenosine transferase [Enterococcus faecalis TX1341]
gi|315172038|gb|EFU16055.1| dimethyladenosine transferase [Enterococcus faecalis TX1342]
gi|315173444|gb|EFU17461.1| dimethyladenosine transferase [Enterococcus faecalis TX1346]
gi|315574151|gb|EFU86342.1| dimethyladenosine transferase [Enterococcus faecalis TX0309B]
gi|315577282|gb|EFU89473.1| dimethyladenosine transferase [Enterococcus faecalis TX0630]
gi|315581706|gb|EFU93897.1| dimethyladenosine transferase [Enterococcus faecalis TX0309A]
gi|327534516|gb|AEA93350.1| dimethyladenosine transferase [Enterococcus faecalis OG1RF]
gi|397335965|gb|AFO43637.1| dimethyladenosine transferase [Enterococcus faecalis D32]
gi|402357019|gb|EJU91735.1| dimethyladenosine transferase [Enterococcus faecalis ERV103]
gi|402357324|gb|EJU92036.1| dimethyladenosine transferase [Enterococcus faecalis ERV116]
gi|402359622|gb|EJU94247.1| dimethyladenosine transferase [Enterococcus faecalis 599]
gi|402366155|gb|EJV00553.1| dimethyladenosine transferase [Enterococcus faecalis ERV129]
gi|402369125|gb|EJV03416.1| dimethyladenosine transferase [Enterococcus faecalis ERV31]
gi|402369513|gb|EJV03790.1| dimethyladenosine transferase [Enterococcus faecalis ERV25]
gi|402373801|gb|EJV07857.1| dimethyladenosine transferase [Enterococcus faecalis ERV62]
gi|402376596|gb|EJV10531.1| dimethyladenosine transferase [Enterococcus faecalis ERV37]
gi|402379522|gb|EJV13320.1| dimethyladenosine transferase [Enterococcus faecalis ERV41]
gi|402381837|gb|EJV15531.1| dimethyladenosine transferase [Enterococcus faecalis ERV65]
gi|402385628|gb|EJV19161.1| dimethyladenosine transferase [Enterococcus faecalis ERV68]
gi|402386110|gb|EJV19622.1| dimethyladenosine transferase [Enterococcus faecalis ERV63]
gi|402396172|gb|EJV29245.1| dimethyladenosine transferase [Enterococcus faecalis ERV72]
gi|402398260|gb|EJV31217.1| dimethyladenosine transferase [Enterococcus faecalis ERV81]
gi|402398558|gb|EJV31496.1| dimethyladenosine transferase [Enterococcus faecalis ERV73]
gi|402405182|gb|EJV37782.1| dimethyladenosine transferase [Enterococcus faecalis ERV85]
gi|402407475|gb|EJV40004.1| dimethyladenosine transferase [Enterococcus faecalis R508]
gi|402408403|gb|EJV40874.1| dimethyladenosine transferase [Enterococcus faecalis ERV93]
gi|427184615|emb|CCO71839.1| dimethyladenosine transferase [Enterococcus faecalis str.
Symbioflor 1]
gi|429513639|gb|ELA03218.1| dimethyladenosine transferase [Enterococcus faecalis OG1X]
gi|429516472|gb|ELA05962.1| dimethyladenosine transferase [Enterococcus faecalis M7]
Length = 295
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 21/191 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K + K L QNFL EP + KIV AG V EVGPG G++T L
Sbjct: 14 KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A++V E D R P L D L++ V V ++ E + + E P I+
Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDNVTV------VHQDVLKADLVETTNQVFQEKYP-IK 125
Query: 134 IIGNLPFNVSTPLIIKWIQA---ISENLLFPKHKRQLVVSLLERACVKPILRPY---QLS 187
++ NLP+ ++TP+++ ++++ ++E ++ + + + +R KP + Y ++
Sbjct: 126 VVANLPYYITTPIMMHFLESSLDVAEMVVMMQKE------VADRIAAKPGTKAYGSLSIA 179
Query: 188 VQEFGQICLAY 198
VQ F + +A+
Sbjct: 180 VQYFMEASVAF 190
>gi|257081179|ref|ZP_05575540.1| dimethyladenosine transferase [Enterococcus faecalis E1Sol]
gi|384517983|ref|YP_005705288.1| dimethyladenosine transferase [Enterococcus faecalis 62]
gi|256989209|gb|EEU76511.1| dimethyladenosine transferase [Enterococcus faecalis E1Sol]
gi|323480116|gb|ADX79555.1| dimethyladenosine transferase [Enterococcus faecalis 62]
Length = 295
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 21/191 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K + K L QNFL EP + KIV AG V EVGPG G++T L
Sbjct: 14 KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A++V E D R P L D L++ V V ++ E + + E P I+
Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDNVTV------VHQDVLKADLVETTNQVFQEKYP-IK 125
Query: 134 IIGNLPFNVSTPLIIKWIQA---ISENLLFPKHKRQLVVSLLERACVKPILRPY---QLS 187
++ NLP+ ++TP+++ ++++ ++E ++ + + + +R KP + Y ++
Sbjct: 126 VVANLPYYITTPIMMHFLESSLDVAEMVVMMQKE------VADRIAAKPGTKAYGSLSIA 179
Query: 188 VQEFGQICLAY 198
VQ F + +A+
Sbjct: 180 VQYFMEASVAF 190
>gi|397688223|ref|YP_006525542.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Pseudomonas
stutzeri DSM 10701]
gi|395809779|gb|AFN79184.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas stutzeri DSM 10701]
Length = 267
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R G ++ E+GPG G++T +L A L ++
Sbjct: 4 YQHRARKRFGQNFLHDAGVIDRILRAIHAKPGEQLVEIGPGQGALTEGLLG-SGANLNVV 62
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L A H GD + F + SE +R++GNLP+
Sbjct: 63 ELDLDLIPILQG-KFAGHENFSLHQGDALKFDFARL---------SETPGSLRVVGNLPY 112
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 113 NISTPLIFHLL 123
>gi|422730950|ref|ZP_16787331.1| dimethyladenosine transferase [Enterococcus faecalis TX0645]
gi|315163005|gb|EFU07022.1| dimethyladenosine transferase [Enterococcus faecalis TX0645]
Length = 295
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 21/191 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K + K L QNFL EP + KIV AG V EVGPG G++T L
Sbjct: 14 KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A++V E D R P L D L++ V V ++ E + + E P I+
Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDNVTV------VHQDVLKADLVETTNQVFQEKYP-IK 125
Query: 134 IIGNLPFNVSTPLIIKWIQA---ISENLLFPKHKRQLVVSLLERACVKPILRPY---QLS 187
++ NLP+ ++TP+++ ++++ ++E ++ + + + +R KP + Y ++
Sbjct: 126 VVANLPYYITTPIMMHFLESSLDVAEMVVMMQKE------VADRIAAKPGTKAYGSLSIA 179
Query: 188 VQEFGQICLAY 198
VQ F + +A+
Sbjct: 180 VQYFMEASVAF 190
>gi|256960062|ref|ZP_05564233.1| dimethyladenosine transferase [Enterococcus faecalis Merz96]
gi|256950558|gb|EEU67190.1| dimethyladenosine transferase [Enterococcus faecalis Merz96]
Length = 292
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 21/191 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K + K L QNFL EP + KIV AG V EVGPG G++T L
Sbjct: 14 KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A++V E D R P L D L++ V V ++ E + + E P I+
Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDNVTV------VHQDVLKADLVETTNQVFQEKYP-IK 125
Query: 134 IIGNLPFNVSTPLIIKWIQA---ISENLLFPKHKRQLVVSLLERACVKPILRPY---QLS 187
++ NLP+ ++TP+++ ++++ ++E ++ + + + +R KP + Y ++
Sbjct: 126 VVANLPYYITTPIMMHFLESSLDVAEMVVMMQKE------VADRIAAKPGTKAYGSLSIA 179
Query: 188 VQEFGQICLAY 198
VQ F + +A+
Sbjct: 180 VQYFMEASVAF 190
>gi|395495209|ref|ZP_10426788.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. PAMC 25886]
Length = 270
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L + +L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLL-KSGGQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ + P + H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQQFASMPN-FNLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI +
Sbjct: 114 NISTPLIFHLLN 125
>gi|325276041|ref|ZP_08141856.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. TJI-51]
gi|324098826|gb|EGB96857.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. TJI-51]
Length = 267
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R G + E+GPG G++T +L A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGIIDRILRAIHAKPGEHLLEIGPGQGALTEGLLG-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP--GIRIIGNL 138
E D P L A H GD + F + G+P ++++GNL
Sbjct: 64 ELDKDLVPILQH-KFADRSNFRLHQGDALKFDFNRL-----------GVPPRSLKVVGNL 111
Query: 139 PFNVSTPLIIKWI 151
P+N+STPLI +
Sbjct: 112 PYNISTPLIFHLL 124
>gi|253576891|ref|ZP_04854216.1| dimethyladenosine transferase [Paenibacillus sp. oral taxon 786
str. D14]
gi|251843758|gb|EES71781.1| dimethyladenosine transferase [Paenibacillus sp. oral taxon 786
str. D14]
Length = 298
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++II+ + K L QNFL + + KIV A E+GPG G++T L +
Sbjct: 14 KEIIQRHGFSFKKSLGQNFLIDQNILGKIVAAAELEKTQGALEIGPGIGALTEK-LAQEA 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
++ +E D R P L + + P VH GDV+ ++ +F+ + G+ G+ +
Sbjct: 73 GKVAAVEIDQRLLPILQEVLEPYPH-VHVIHGDVLKLDLKALFAAE-----FSGVSGVSV 126
Query: 135 IGNLPFNVSTPLIIKWIQ 152
+ NLP+ V+TP+++K ++
Sbjct: 127 VANLPYYVTTPIMMKLLE 144
>gi|256964244|ref|ZP_05568415.1| dimethyladenosine transferase [Enterococcus faecalis HIP11704]
gi|307271936|ref|ZP_07553204.1| dimethyladenosine transferase [Enterococcus faecalis TX0855]
gi|256954740|gb|EEU71372.1| dimethyladenosine transferase [Enterococcus faecalis HIP11704]
gi|306511442|gb|EFM80444.1| dimethyladenosine transferase [Enterococcus faecalis TX0855]
Length = 295
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K + K L QNFL EP + KIV AG V EVGPG G++T L
Sbjct: 14 KEILKKHGFSFKKSLGQNFLTEPNILRKIVETAGINQQTNVVEVGPGIGALTEQ-LAMNA 72
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A++V E D R P L D L++ V V ++ E + + E P I+
Sbjct: 73 AQVVAFEIDDRLIPVLADTLSRYDNVTV------VHQDVLKADLVETTNQVFQEKYP-IK 125
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQE 190
++ NLP+ ++TP+++ ++++ +L + + + +R KP + Y ++VQ
Sbjct: 126 VVANLPYYITTPIMMHFLES---SLDLAEMVVMMQKEVADRIAAKPGTKAYGSLSIAVQY 182
Query: 191 FGQICLAY 198
F + +A+
Sbjct: 183 FMEASVAF 190
>gi|398983244|ref|ZP_10689916.1| dimethyladenosine transferase [Pseudomonas sp. GM24]
gi|399011946|ref|ZP_10714275.1| dimethyladenosine transferase [Pseudomonas sp. GM16]
gi|398116956|gb|EJM06712.1| dimethyladenosine transferase [Pseudomonas sp. GM16]
gi|398157430|gb|EJM45819.1| dimethyladenosine transferase [Pseudomonas sp. GM24]
Length = 272
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ + + + E+GPG G++T +L+ A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSISAKSEDRLLEIGPGQGALTAGLLS-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A + H GD + F + + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNTLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI +
Sbjct: 114 NISTPLIFHLLN 125
>gi|146309027|ref|YP_001189492.1| dimethyladenosine transferase [Pseudomonas mendocina ymp]
gi|145577228|gb|ABP86760.1| dimethyladenosine transferase [Pseudomonas mendocina ymp]
Length = 269
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R G + E+GPG G+IT +L A+L +I
Sbjct: 4 YQHRARKRFGQNFLHDAGVIDRILRAIRAKDGERLLEIGPGQGAITEGLLG-SGAQLDVI 62
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L +P + GD + F + E PG +R++GNLP
Sbjct: 63 ELDLDLIPILQGKFGDNPR-FRLNQGDALKFDFARL----------EAAPGSLRVVGNLP 111
Query: 140 FNVSTPLIIKWI 151
+N+STPLI +
Sbjct: 112 YNISTPLIFHLL 123
>gi|452748435|ref|ZP_21948214.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas stutzeri NF13]
gi|452007609|gb|EMD99862.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas stutzeri NF13]
Length = 264
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + +I+R +G + E+GPG G++T +L+ A L ++
Sbjct: 4 YQHRARKRFGQNFLHDAGVIHRILRAIHAKSGERLVEIGPGQGALTEGLLD-SGAHLDVV 62
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L A + H GD + F + +E +RI+GNLP+
Sbjct: 63 ELDLDLIPILQG-KFAGRDNFNLHQGDALKFDFSRLSAEPN---------SLRIVGNLPY 112
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 113 NISTPLIFHLL 123
>gi|149513367|ref|XP_001516033.1| PREDICTED: dimethyladenosine transferase 1, mitochondrial-like,
partial [Ornithorhynchus anatinus]
Length = 87
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 44/64 (68%)
Query: 92 MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWI 151
ML++A+P + GDV++F ++ F RR+W P I IIGNLPF+VSTPLIIKW+
Sbjct: 1 MLSEAAPGKLRIVHGDVLTFNVEKAFPRSLRREWDADPPNIHIIGNLPFSVSTPLIIKWL 60
Query: 152 QAIS 155
+ IS
Sbjct: 61 ENIS 64
>gi|421505663|ref|ZP_15952598.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas mendocina DLHK]
gi|400343360|gb|EJO91735.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas mendocina DLHK]
Length = 269
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R G + E+GPG G+IT +L A+L +I
Sbjct: 4 YQHRARKRFGQNFLHDAGVIDRILRAIRAKEGERLLEIGPGQGAITEGLLG-SGAQLDVI 62
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L +P + GD + F + E PG +R++GNLP
Sbjct: 63 ELDLDLIPILQGKFGDNPR-FRLNQGDALKFDFARL----------EAAPGSLRVVGNLP 111
Query: 140 FNVSTPLIIKWI 151
+N+STPLI +
Sbjct: 112 YNISTPLIFHLL 123
>gi|392407266|ref|YP_006443874.1| dimethyladenosine transferase [Anaerobaculum mobile DSM 13181]
gi|390620402|gb|AFM21549.1| dimethyladenosine transferase [Anaerobaculum mobile DSM 13181]
Length = 280
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 23/174 (13%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K L QNFL +P + +V A + + E+GPG G +TR ILN + L +IE D
Sbjct: 19 KSLGQNFLIDPNIARWMVDYAQIGEQDVILEIGPGKGMLTREILNSPCSFLHIIEIDRTL 78
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P ++ L + GDV++ ++++ +++ N+P+N++TPL
Sbjct: 79 APFIEPLLKRHEARTSLIWGDVLTVNLRDLSPSP-----------TKVLANIPYNITTPL 127
Query: 147 IIKWIQAISENLLFPKHKRQLV----VSLLERACVKPILR---PYQLSVQEFGQ 193
I + ++ ++ P ++LV + L ER C KP R P ++++ GQ
Sbjct: 128 IWQILEHLA-----PVGTKELVLMLQLDLAERLCAKPGTRDRSPLGITIERMGQ 176
>gi|448747055|ref|ZP_21728717.1| Ribosomal RNA adenine dimethylase [Halomonas titanicae BH1]
gi|445565215|gb|ELY21326.1| Ribosomal RNA adenine dimethylase [Halomonas titanicae BH1]
Length = 293
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 1 MAAKALRLPPMPSIRDIIKLY-KLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVG 59
+A RL P P ++ + RA K+ QNFL + + +IVR G + + + E+G
Sbjct: 2 LATTYSRLNPHPKEHRLMSTVPQHRARKRFGQNFLRDLGIISRIVRAVGPRSTDRLVEIG 61
Query: 60 PGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE 119
PG G++T +L L +IE D P L + P V H GD + F + +
Sbjct: 62 PGQGALTEPLLE-AAGHLEVIELDRDLIPGLRVQFFNYPDFV-IHEGDALKFDFAALKGD 119
Query: 120 DRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
P +R++GNLP+N+STPLII + A S
Sbjct: 120 G---------PALRVVGNLPYNISTPLIIHLLAAGS 146
>gi|409418305|ref|ZP_11258303.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. HYS]
Length = 268
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ G + E+GPG G++T +L A+L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSIHAKAGERMLEIGPGQGALTSGLLA-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLVPILNQ-QFAGRDNFRLHQGDALKFDFTSLGAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 114 NISTPLIFHLL 124
>gi|225677138|ref|ZP_03788137.1| dimethyladenosine transferase [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225590805|gb|EEH12033.1| dimethyladenosine transferase [Wolbachia endosymbiont of
Muscidifurax uniraptor]
Length = 270
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 11/134 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
+ L+ K L QNF+ +T KIV AG++ V E+GPG G++TR IL P L+ I
Sbjct: 4 FLLKPKKSLGQNFILSSEITKKIVALAGSLENFNVIEIGPGYGALTREILVHNPKSLLSI 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
EKD D L D + + + +++I NLP+
Sbjct: 64 EKDRDLVKHHDQLLNEHQGKYKIIEADALHVIEEELIERP-----------VKVIANLPY 112
Query: 141 NVSTPLIIKWIQAI 154
N+S L +KW+ I
Sbjct: 113 NISVVLFLKWLNNI 126
>gi|398853804|ref|ZP_10610396.1| dimethyladenosine transferase [Pseudomonas sp. GM80]
gi|398238421|gb|EJN24150.1| dimethyladenosine transferase [Pseudomonas sp. GM80]
Length = 272
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ +A K+ QNFL + + D+I+R+ + + E+GPG G++T +LN +L ++
Sbjct: 5 YQHKARKRFGQNFLHDAGVIDRILRSISAKPDDRLLEIGPGQGALTAGLLN-SGGQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A + H GD + F + + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNTLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI +
Sbjct: 114 NISTPLIFHLLN 125
>gi|402700967|ref|ZP_10848946.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas fragi A22]
Length = 272
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
++ +A K+ QNFL + + D+I+R + + E+GPG G++T+ ILN +L ++
Sbjct: 5 FQHKARKRFGQNFLHDAGVIDRILRAINAKPTDRLLEIGPGQGALTKGILN-SGGQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L A H GD + F ++ + R +R++GNLP+
Sbjct: 64 ELDKDLIPILKQ-QFAGMSNFTLHQGDALKFDFNSLGAAPRT---------LRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI ++
Sbjct: 114 NISTPLIFHLLK 125
>gi|423699688|ref|ZP_17674178.1| dimethyladenosine transferase [Pseudomonas fluorescens Q8r1-96]
gi|387996837|gb|EIK58167.1| dimethyladenosine transferase [Pseudomonas fluorescens Q8r1-96]
Length = 272
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIRAKPDDRLLEIGPGQGALTEGLLD-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLVPILNQ-QFAGRSNFSLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 114 NISTPLIFHLL 124
>gi|395796297|ref|ZP_10475595.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. Ag1]
gi|421139613|ref|ZP_15599647.1| dimethyladenosine transferase [Pseudomonas fluorescens BBc6R8]
gi|395339599|gb|EJF71442.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. Ag1]
gi|404509185|gb|EKA23121.1| dimethyladenosine transferase [Pseudomonas fluorescens BBc6R8]
Length = 270
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L + +L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLL-KSGGQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ P + H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQQFAGMPN-FNLHQGDALKFDFTSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI +
Sbjct: 114 NISTPLIFHLLN 125
>gi|330812131|ref|YP_004356593.1| dimethyladenosine transferase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380239|gb|AEA71589.1| putative dimethyladenosine transferase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 272
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIRAKPDDRLLEIGPGQGALTEGLLD-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLVPILNQ-QFAGRSNFSLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 114 NISTPLIFHLL 124
>gi|307091952|gb|ADN28311.1| putative rRNA methyltransferase, partial [uncultured bacterium]
Length = 123
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP 98
LT +I R AG++ + + E+GPGPG +TR++L R++ +E+D R L +A P
Sbjct: 5 LTARIARAAGSLETHTIVEIGPGPGGLTRALLALGARRVIAVERDDRAIVALQEVAARYP 64
Query: 99 CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153
+ D + F + M DR +I+ NLP+N +T L+ W+ A
Sbjct: 65 GRLDIVAADALEFDPRPMLGGDR----------AKIVANLPYNTATVLLTGWLSA 109
>gi|308171933|ref|YP_003918638.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
amyloliquefaciens DSM 7]
gi|384157655|ref|YP_005539728.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
amyloliquefaciens TA208]
gi|384162448|ref|YP_005543827.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
amyloliquefaciens LL3]
gi|384166670|ref|YP_005548048.1| dimethyladenosine transferase [Bacillus amyloliquefaciens XH7]
gi|307604797|emb|CBI41168.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
amyloliquefaciens DSM 7]
gi|328551743|gb|AEB22235.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens TA208]
gi|328910003|gb|AEB61599.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
amyloliquefaciens LL3]
gi|341825949|gb|AEK87200.1| dimethyladenosine transferase [Bacillus amyloliquefaciens XH7]
Length = 293
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + D+IV +A V E+GPG G++T L +R
Sbjct: 13 KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGIGALTEQ-LAKRA 71
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ + H DV+ ++++ E++ +D E I
Sbjct: 72 KKVVAFEIDQRLLPILNDTLSPYDNVTIIHH--DVLKADVKSVI-EEQFQDCDE----IM 124
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
+ NLP+ V+TP+I+K ++ E+L L + ER P S +E+G
Sbjct: 125 VTANLPYYVTTPIIMKLLE---EHLPLKGIVVMLQKEVAERMAADP-------SSKEYGS 174
Query: 194 ICLAYRDMCE 203
+ +A + E
Sbjct: 175 LSIAVQFYTE 184
>gi|365154899|ref|ZP_09351297.1| ribosomal RNA small subunit methyltransferase A [Bacillus smithii
7_3_47FAA]
gi|363629010|gb|EHL79703.1| ribosomal RNA small subunit methyltransferase A [Bacillus smithii
7_3_47FAA]
Length = 291
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R+I+K Y K L QNFL +P + ++I AG E+GPG G++T L R+
Sbjct: 11 REILKKYGFAFKKSLGQNFLVDPNVLNRITEAAGLTKETAAIEIGPGIGALTEH-LARKA 69
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ + DV+ ++ + E+ G I
Sbjct: 70 GKVVAFEIDKRLLPILKDTLSPYKNVEIIHQ--DVLKANVKEVIKEEL-----SGYSDIM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ V+TP+I+K ++
Sbjct: 123 VVANLPYYVTTPIIMKLLE 141
>gi|378953236|ref|YP_005210724.1| protein KsgA [Pseudomonas fluorescens F113]
gi|359763250|gb|AEV65329.1| KsgA [Pseudomonas fluorescens F113]
Length = 272
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T +L+ A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIRAKPDDRLLEIGPGQGALTEGLLD-SGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLVPILNQ-QFAGRSNFSLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 114 NISTPLIFHLL 124
>gi|303245325|ref|ZP_07331609.1| dimethyladenosine transferase [Desulfovibrio fructosovorans JJ]
gi|302493174|gb|EFL53036.1| dimethyladenosine transferase [Desulfovibrio fructosovorans JJ]
Length = 283
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 26/187 (13%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA + L QNFL +P KIV G G+ V E+GPG G++T I P+ + +EKD
Sbjct: 24 RAKRSLGQNFLSDPNTAAKIVSACGIAAGDTVIEIGPGRGALTGLIAAAGPSSFLALEKD 83
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS--EGLPG-IRIIGNLPF 140
L++ P ++ ++ R+DWS + L G +RIIGNLP+
Sbjct: 84 RELAA---HLSRTHP-------------SLAVALTDALRQDWSRLDRLSGNVRIIGNLPY 127
Query: 141 NVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSVQEFGQICLAYR 199
N+++PL+ + F + + + R C P R Y LS + +AY
Sbjct: 128 NIASPLLWDLCAGATR---FTRAAFMVQHEVALRLCAGPGGREYGALSAWIASHVRVAY- 183
Query: 200 DMCEEMP 206
C ++P
Sbjct: 184 --CFKVP 188
>gi|388467103|ref|ZP_10141313.1| dimethyladenosine transferase [Pseudomonas synxantha BG33R]
gi|388010683|gb|EIK71870.1| dimethyladenosine transferase [Pseudomonas synxantha BG33R]
Length = 270
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L +L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLL-ASGGQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ P + H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQQFAGKPN-FNLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI +
Sbjct: 114 NISTPLIFHLLN 125
>gi|350264142|ref|YP_004875449.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597029|gb|AEP84817.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 292
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + D+IV +A V E+GPG G++T I +R
Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQI-AKRA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ V DV+ ++++ E++ +D E I
Sbjct: 71 KKVVAFEIDQRLLPILKDTLSPYDNVTVIHQ--DVLKADVKSVI-EEQFQDCDE----IM 123
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
++ NLP+ V+TP+I+K ++ E+L L + ER P S +E+G
Sbjct: 124 VVANLPYYVTTPIIMKLLE---EHLPLKGIVVMLQKEVAERMAADP-------SSKEYGS 173
Query: 194 ICLAYRDMCE 203
+ +A + E
Sbjct: 174 LSIAVQFYTE 183
>gi|443635067|ref|ZP_21119237.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
gi|443345120|gb|ELS59187.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
Length = 292
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + D+IV +A V E+GPG G++T L +R
Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQ-LAKRA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ V DV+ ++++ E++ +D E I
Sbjct: 71 KKVVAFEIDQRLLPILKDTLSPYDNVTVIHQ--DVLKADVKSVI-EEQFQDCDE----IM 123
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
++ NLP+ V+TP+I+K ++ E+L L + ER P S +E+G
Sbjct: 124 VVANLPYYVTTPIIMKLLE---EHLPLKGIVVMLQKEVAERMAADP-------SSKEYGS 173
Query: 194 ICLAYRDMCE 203
+ +A + E
Sbjct: 174 LSIAVQFYTE 183
>gi|447918645|ref|YP_007399213.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas poae RE*1-1-14]
gi|445202508|gb|AGE27717.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas poae RE*1-1-14]
Length = 270
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L +L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLL-ASGGQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A + H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFAGKANFNLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI + S
Sbjct: 114 NISTPLIFHLLNNAS 128
>gi|406573325|ref|ZP_11049077.1| putative dimethyladenosine transferase [Janibacter hoylei PVAS-1]
gi|404557257|gb|EKA62707.1| putative dimethyladenosine transferase [Janibacter hoylei PVAS-1]
Length = 298
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 25/194 (12%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R++ +R KQ QNF+ + +IVR G + V E+GPG GS+T ++L
Sbjct: 23 VRELADGLGVRPTKQWGQNFVVDANTVRRIVRAGGVTADDHVVEIGPGLGSLTLALLEEA 82
Query: 74 PARLVLIEKDPRFTPCL--DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
AR+ +E DP L + AQ H + + T+ + G P
Sbjct: 83 -ARVTAVEVDPTLAAALPGTVAAQGPAVADHLTVVPADALTVTEL----------PGPPP 131
Query: 132 IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLL---ERACVKPILRPYQL-S 187
++ NLP+N+S P+++ +++ FP +R LV+ L ER P + Y + S
Sbjct: 132 TALVANLPYNISVPVVLHFLET------FPTIERVLVMVQLEVAERLAAGPGSKTYGVPS 185
Query: 188 VQE--FGQICLAYR 199
V+ + + LA R
Sbjct: 186 VKAAWWADVALAGR 199
>gi|436842008|ref|YP_007326386.1| Ribosomal RNA small subunit methyltransferase A [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432170914|emb|CCO24285.1| Ribosomal RNA small subunit methyltransferase A [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 262
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 16/134 (11%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K L QNFL + + KIV + + + E+GPG G++TR I+ P R++LIEKD
Sbjct: 6 RAKKSLGQNFLQDANIARKIVDSLRITENDCIIEIGPGQGALTRHIIEASPERVMLIEKD 65
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L +A V D + F +++ D ++W +IIGNLP+NV+
Sbjct: 66 RDLAPAL----EAEFPEVEVIQEDALKFNWEDL---DPAKNW-------KIIGNLPYNVA 111
Query: 144 TPLIIKWIQAISEN 157
+ ++ W A N
Sbjct: 112 SKIM--WDVAAQSN 123
>gi|420145311|ref|ZP_14652781.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
coryniformis subsp. coryniformis CECT 5711]
gi|398403087|gb|EJN56362.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
coryniformis subsp. coryniformis CECT 5711]
Length = 296
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R+I+ Y L K L QNFL EP + +I A T ++V E+GPG GS+T L +
Sbjct: 15 REILAAYGLTFKKSLGQNFLTEPTILRQIASAAELTTADDVLEIGPGIGSLTEQ-LAQNA 73
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++ +E D R P L D LA V DV+ + + RD +G ++
Sbjct: 74 HQVLALEIDQRLLPILADTLAPYDNVTVLNQ--DVLKSDLATLI-----RDHFDGQHKVK 126
Query: 134 IIGNLPFNVSTPLIIKWIQA 153
++ NLP+ ++TP++++ +++
Sbjct: 127 VVANLPYYITTPILLRLLES 146
>gi|52078537|ref|YP_077328.1| dimethyladenosine transferase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319648566|ref|ZP_08002780.1| dimethyladenosine transferase [Bacillus sp. BT1B_CT2]
gi|404487407|ref|YP_006711513.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|423680435|ref|ZP_17655274.1| dimethyladenosine transferase [Bacillus licheniformis WX-02]
gi|62900505|sp|Q65PH9.1|RSMA_BACLD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|52001748|gb|AAU21690.1| dimethyladenosine transferase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52346401|gb|AAU39035.1| dimethyladenosine transferase RsmA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317389333|gb|EFV70146.1| dimethyladenosine transferase [Bacillus sp. BT1B_CT2]
gi|383441541|gb|EID49250.1| dimethyladenosine transferase [Bacillus licheniformis WX-02]
Length = 292
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+ Y K L QNFL + + D+IV +AG V E+GPG G++T L +R
Sbjct: 12 KEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQ-LAKRA 70
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG--- 131
++ E D R P L+ SP D ++ Q++ D R E
Sbjct: 71 KKVTAFEIDQRLLPILE--DTLSPY-------DNVTVIHQDVLKADVRAVMDEQFQDCDE 121
Query: 132 IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEF 191
+ ++ NLP+ V+TP+I+K ++ ENL L + +R KP S +E+
Sbjct: 122 VMVVANLPYYVTTPIIMKLLE---ENLPLKGIVVMLQKEVADRMAAKP-------SSKEY 171
Query: 192 GQICLAYRDMCE 203
G + +A + E
Sbjct: 172 GSLSIAVQFYTE 183
>gi|68536597|ref|YP_251302.1| dimethyladenosine transferase [Corynebacterium jeikeium K411]
gi|119365018|sp|Q4JU23.1|RSMA_CORJK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|68264196|emb|CAI37684.1| dimethyladenosine transferase [Corynebacterium jeikeium K411]
Length = 316
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 17/175 (9%)
Query: 4 KALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPG 63
+ +RL IR + + L K+L QNF+ +P KIV+ A + V E+GPG G
Sbjct: 5 RKIRLLGPNEIRQLAEELDLNPTKKLGQNFVHDPNTVRKIVKAADVTADDNVVEIGPGLG 64
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQ---ASPCPVHFHLGDVMSFTMQNMFSED 120
S+T ++L A + +E DPR L + A+ V L D M +Q+
Sbjct: 65 SLTLALLE-AGASVTAVEIDPRLAAKLPATLEEQGAAEADVAVILKDAMEVAVQDF---- 119
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERA 175
D LP ++ NLP+NVS P+++ ++ FP R LV+ LE A
Sbjct: 120 --ADAGRPLP-TALVANLPYNVSVPVLLHMLEE------FPSIDRVLVMVQLEVA 165
>gi|336392333|ref|ZP_08573732.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus coryniformis subsp. torquens KCTC 3535]
Length = 296
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R+I+ Y L K L QNFL EP + +I A T ++V E+GPG GS+T L +
Sbjct: 15 REILAAYGLTFKKSLGQNFLTEPTILRQIASAAELTTADDVLEIGPGIGSLTEQ-LAQNA 73
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++ +E D R P L D LA V DV+ + + RD +G ++
Sbjct: 74 HQVLALEIDQRLLPILADTLAPYDNVTVLNQ--DVLKSDLATLI-----RDHFDGQHKVK 126
Query: 134 IIGNLPFNVSTPLIIKWIQA 153
++ NLP+ ++TP++++ +++
Sbjct: 127 VVANLPYYITTPILLRLLES 146
>gi|417003907|ref|ZP_11942793.1| dimethyladenosine transferase [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325478267|gb|EGC81386.1| dimethyladenosine transferase [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 280
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 13/142 (9%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+++I LY R K L QNFL + DKIV +A ++G V E+GPG G+IT + +
Sbjct: 10 VKEITDLYSFRFSKSLGQNFLVDKNFVDKIV-DAADVSGENVIEIGPGIGTITYE-MAKV 67
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-- 131
++V IE D P ++ V F D++ +++ D + +E G
Sbjct: 68 AKKVVAIEIDDSLIPIIE------ENMVEFDNFDLIH---EDILKADLEKIVAEEFAGES 118
Query: 132 IRIIGNLPFNVSTPLIIKWIQA 153
+++ NLP+ ++TP+I K + +
Sbjct: 119 FKVVSNLPYYITTPIIEKLVTS 140
>gi|325283380|ref|YP_004255921.1| Ribosomal RNA small subunit methyltransferase A [Deinococcus
proteolyticus MRP]
gi|324315189|gb|ADY26304.1| Ribosomal RNA small subunit methyltransferase A [Deinococcus
proteolyticus MRP]
Length = 282
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 18/160 (11%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
++D++ + +R K L QNFL + + I G G V EVGPG G +TR L R
Sbjct: 19 VKDLMARHGIRPTKSLGQNFLIDGNILRAIADAGGAAEGVRVLEVGPGLGVLTRE-LAER 77
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A++ +EKD P L+ + V+ GD + F D++ G R
Sbjct: 78 GAQVTTLEKDQGLRPVLE--ETLAGLDVNIVWGDALEF------------DYASLPAGTR 123
Query: 134 IIGNLPFNVSTPLIIKWIQA---ISENLLFPKHKRQLVVS 170
+I NLP+ ++ PL+ ++++A +S +L K Q + S
Sbjct: 124 VIANLPYYITGPLLSRFMRAPSIVSATVLVQKEVAQRLAS 163
>gi|218885605|ref|YP_002434926.1| dimethyladenosine transferase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756559|gb|ACL07458.1| dimethyladenosine transferase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 270
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K L QNFL + + KIV + V E+GPGPG++TR I PA+L L+EKD
Sbjct: 11 RAKKSLGQNFLRDRNIAAKIVAALRIGPEDRVIEIGPGPGALTRHIHAAGPAQLFLLEKD 70
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
+ A P + L D + F + + S R W ++IGNLP+NV+
Sbjct: 71 YHWATEHGRTRPAEPPVITPVLTDALLFPWERLTSA---RSW-------KVIGNLPYNVA 120
Query: 144 TPLI 147
+PL+
Sbjct: 121 SPLM 124
>gi|386019301|ref|YP_005937325.1| dimethyladenosine transferase [Pseudomonas stutzeri DSM 4166]
gi|327479273|gb|AEA82583.1| dimethyladenosine transferase [Pseudomonas stutzeri DSM 4166]
Length = 264
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 13/133 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + +I+R G + E+GPG G++T +L+ A L ++
Sbjct: 4 YQHRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLD-SGAHLDVV 62
Query: 81 EKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
E D P L A+ S + H GD + F + E +RI+GNLP
Sbjct: 63 ELDLDLIPILQSRFAERSNFAL--HQGDALKFDFAQLSREP---------ASLRIVGNLP 111
Query: 140 FNVSTPLIIKWIQ 152
+N+STPLI ++
Sbjct: 112 YNISTPLIFHLLE 124
>gi|391228579|ref|ZP_10264785.1| dimethyladenosine transferase (rRNA methylation) [Opitutaceae
bacterium TAV1]
gi|391218240|gb|EIP96660.1| dimethyladenosine transferase (rRNA methylation) [Opitutaceae
bacterium TAV1]
Length = 289
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTP 88
L QNFL + + K + AG G+ V E+GPG G++TR++L A + +E+D
Sbjct: 23 LGQNFLVDGNIVKKSLELAGVAPGDTVVEIGPGLGTLTRALLEAG-ACVWAVERDATLHA 81
Query: 89 CL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLI 147
L LA+ P H GD + + + + D S P +I+ NLP+ +STP
Sbjct: 82 HLAGTLAKEFPATFHLLEGDAVEHPLAALPVDKEEADSSTSAPAFKIVANLPYAISTP-- 139
Query: 148 IKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPG 207
W+ A+ L + L + +R +P + FG I + ++ + PG
Sbjct: 140 --WMDAVLSGPLPARMVLMLQLEAAQRYTAQP-------GTKLFGAISVFLQNAFDAAPG 190
>gi|352100240|ref|ZP_08958047.1| dimethyladenosine transferase [Halomonas sp. HAL1]
gi|350601265|gb|EHA17314.1| dimethyladenosine transferase [Halomonas sp. HAL1]
Length = 275
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL + + +IVR G + + + E+GPG G++T +L L +IE D
Sbjct: 8 RARKRFGQNFLRDLGIISRIVRAVGPRSTDRLVEIGPGQGALTEPLLE-AAGHLEVIELD 66
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L + P V H GD + F + + P +R++GNLP+N+S
Sbjct: 67 RDLIPGLRVQFFNYPDFV-IHEGDALKFDFAALKGDG---------PALRVVGNLPYNIS 116
Query: 144 TPLIIKWIQAIS--ENLLFPKHKRQLVVSLLERACVKP 179
TPLII + A S E++ F K ++ER +P
Sbjct: 117 TPLIIHLLAAGSAIEDMHFMLQK-----EVVERLAAEP 149
>gi|357399741|ref|YP_004911666.1| Dimethyladenosine transferase [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|386355780|ref|YP_006054026.1| dimethyladenosine transferase [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337766150|emb|CCB74861.1| Dimethyladenosine transferase [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|365806287|gb|AEW94503.1| dimethyladenosine transferase [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 293
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 78/157 (49%), Gaps = 17/157 (10%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
IR++ +R KQL QNF+ + +IVR AG + V EVGPG GS+T ++L
Sbjct: 18 IRELAAALGVRPTKQLGQNFVIDANTVRRIVRTAGVRPDDVVVEVGPGLGSLTLALLEAA 77
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHL-GDVMSFTMQNMFSEDRRRDWSEGLPGI 132
RLV +E DP +LA A P VH L G F + + + + G P
Sbjct: 78 D-RLVAVEIDP-------VLAAALPATVHARLPGRADRFDL--VHRDALQVSEVPGPPPT 127
Query: 133 RIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV 169
++ NLP+NV+ P+++ + FP +R LV+
Sbjct: 128 ALVANLPYNVAVPVLLHMLAT------FPSIERTLVM 158
>gi|289523105|ref|ZP_06439959.1| dimethyladenosine transferase [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289503648|gb|EFD24812.1| dimethyladenosine transferase [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 278
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 23/177 (12%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K L QNFL +P + +V NA + V EVGPG G +T+ IL + L +IE D
Sbjct: 13 KAKKSLGQNFLVDPNIARWMVENAALNEDDVVLEVGPGKGMLTKEILTSQCRFLHVIEID 72
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L+ + + S + GDV++ ++ + P +++ N+P+N++
Sbjct: 73 KTLAPFLEPIVKTSKNRMSVIWGDVLTINLKEL-----------SPPPTKVLANIPYNIT 121
Query: 144 TPLIIKWIQAISENLLFPKHKRQLVVSLL----ERACVKPILR---PYQLSVQEFGQ 193
TPLI + ++ L P R+L++ L +R C KP + P +++++ G+
Sbjct: 122 TPLIWQILEH-----LVPLGTRELLLMLQLELAQRLCAKPKTKDRSPIGITIEKMGK 173
>gi|119474855|ref|ZP_01615208.1| dimethyladenosine transferase [marine gamma proteobacterium
HTCC2143]
gi|119451058|gb|EAW32291.1| dimethyladenosine transferase [marine gamma proteobacterium
HTCC2143]
Length = 267
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL + + +I R + + E+GPG G++T IL +L IE D
Sbjct: 10 RARKRFGQNFLQDQGIIHRIARAVHATDKDHIVEIGPGQGALTTDIL-AGGCQLDAIELD 68
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L P H H GD ++F ++ +G +R++GNLP+N+S
Sbjct: 69 RDLIPILQQQFSEQP-RFHLHQGDALTFDFSSLV---------KGEEKLRVVGNLPYNIS 118
Query: 144 TPLIIKWI 151
TPLI + +
Sbjct: 119 TPLIFRLL 126
>gi|375090111|ref|ZP_09736430.1| dimethyladenosine transferase [Facklamia languida CCUG 37842]
gi|374566004|gb|EHR37259.1| dimethyladenosine transferase [Facklamia languida CCUG 37842]
Length = 299
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 16/152 (10%)
Query: 7 RLPPMPS-IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
R +PS +I+K Y+L K L QNFL EP++ ++V AG V E+GPG G++
Sbjct: 8 RYISLPSRTAEIMKAYQLDMKKSLGQNFLVEPKILQRMVEVAGITDQTTVIEIGPGIGAL 67
Query: 66 TRSILNRRPARLVLIEKDPRFTPCL-DMLAQASPCPV---HFHLGDVMSFTMQNMFSEDR 121
T L ++ E D RF L + LA S V F D+ Q++ + DR
Sbjct: 68 T-EFLALEAKKVYSFEIDQRFVEILKETLADYSNVQVVGQDFLKVDLHDVVYQDLQTADR 126
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153
+ ++ NLP+ ++TP+I+K I++
Sbjct: 127 ----------LVVVANLPYYITTPIIMKLIES 148
>gi|255527800|ref|ZP_05394651.1| dimethyladenosine transferase [Clostridium carboxidivorans P7]
gi|255508513|gb|EET84902.1| dimethyladenosine transferase [Clostridium carboxidivorans P7]
Length = 278
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 21/191 (10%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
S +DI+K Y + K L QNFL + + IV N+ + V E+GPG G++T+ +L +
Sbjct: 5 STKDIVKKYGFKFSKSLGQNFLIDNSVLQDIVDNSNVSKDDLVIEIGPGVGTLTKELL-K 63
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
+ ++ IE D P L+ + H D + + E++
Sbjct: 64 KAKKVYAIELDSDLIPILNEELKEFNNFELVH-KDALKVDFNELIGEEK---------ST 113
Query: 133 RIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFG 192
+++ NLP+ V+TP+I K ++ EN F + + ER KP S +E+G
Sbjct: 114 KVVANLPYYVTTPIISKLLK---ENYKFESLTIMIQKEVGERIAAKP-------STKEYG 163
Query: 193 QICLAYRDMCE 203
+ + + C+
Sbjct: 164 ALSILVQYYCD 174
>gi|340357147|ref|ZP_08679772.1| dimethyladenosine transferase [Sporosarcina newyorkensis 2681]
gi|339618556|gb|EGQ23152.1| dimethyladenosine transferase [Sporosarcina newyorkensis 2681]
Length = 296
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 17/183 (9%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I++ + K L QNFL +P + IV +A V EVGPG G++T L R+
Sbjct: 12 KEILQKHGFSFKKSLGQNFLVDPNVLHNIVSHAAITKNTGVIEVGPGIGALTEH-LARQA 70
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
++V E D R P L+ P H DV+ + + E++ D+ + I +
Sbjct: 71 GKVVAFEIDGRLLPVLEDTMSPYPNVTVLH-QDVLKADLHQVI-EEQFADYED----IVV 124
Query: 135 IGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQI 194
+ NLP+ ++TP+I+K+ L+ +QLV+ + + + P S + +G +
Sbjct: 125 VANLPYYITTPIIMKF-------LMEKARVKQLVIMMQKEVADRITAVP---STKAYGSL 174
Query: 195 CLA 197
+A
Sbjct: 175 SIA 177
>gi|242279077|ref|YP_002991206.1| dimethyladenosine transferase [Desulfovibrio salexigens DSM 2638]
gi|259494247|sp|C6BSW3.1|RSMA_DESAD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|242121971|gb|ACS79667.1| dimethyladenosine transferase [Desulfovibrio salexigens DSM 2638]
Length = 262
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K L QNFL + + KIV + + + E+GPG G++T+ IL P L L+EKD
Sbjct: 6 RAKKSLGQNFLQDANIARKIVDSLKITENDSIIEIGPGQGALTKFILEAGPESLTLVEKD 65
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L +A L D + F + D R+W +I+GNLP+NV+
Sbjct: 66 RDLAPAL----EAEYPEARVELEDALKFDWAGL---DPDRNW-------KIVGNLPYNVA 111
Query: 144 TPLI 147
+ ++
Sbjct: 112 SKIM 115
>gi|160939614|ref|ZP_02086962.1| hypothetical protein CLOBOL_04506 [Clostridium bolteae ATCC
BAA-613]
gi|158437405|gb|EDP15169.1| hypothetical protein CLOBOL_04506 [Clostridium bolteae ATCC
BAA-613]
Length = 292
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 76/139 (54%), Gaps = 10/139 (7%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPGSITRSILNRRP 74
+II+ Y+ K+ QNFL + + DKI+ AG ITG++ V E+GPG G++T+ L
Sbjct: 12 EIIQKYQFAFQKKFGQNFLIDTHVLDKIISAAG-ITGDDCVLEIGPGIGTMTQ-YLAEHA 69
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
++V +E D P LD + V D++ M + E +++G P I++
Sbjct: 70 GKVVAVEIDTNLLPILDETLKGY-SNVTVINSDILKLDMNQLVDE-----YNDGRP-IKV 122
Query: 135 IGNLPFNVSTPLIIKWIQA 153
+ NLP+ ++TP+I+ ++
Sbjct: 123 VANLPYYITTPIIMGLFES 141
>gi|373450944|ref|ZP_09542887.1| Dimethyladenosine transferase [Wolbachia pipientis wAlbB]
gi|371931859|emb|CCE77905.1| Dimethyladenosine transferase [Wolbachia pipientis wAlbB]
Length = 264
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARL 77
+K + L+ K L QNF+ +T +IV AG++ V E+GPG G++TR IL P L
Sbjct: 1 MKKFSLKPKKSLGQNFILSNEITKRIVALAGSLKDFNVIEIGPGYGALTREILAYNPKFL 60
Query: 78 VLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN 137
+ IEKD + L D ++ + + +++I N
Sbjct: 61 LSIEKDSSLVKHHEQLLNEHQGKYRIIEADALNVVEKELVE-----------CPVKVIAN 109
Query: 138 LPFNVSTPLIIKWIQAI 154
LP+N+S L +KW+ I
Sbjct: 110 LPYNISVALFLKWLNNI 126
>gi|440737963|ref|ZP_20917513.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas fluorescens BRIP34879]
gi|440381538|gb|ELQ18065.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas fluorescens BRIP34879]
Length = 270
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 11/135 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L +L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLL-ASGGQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A + H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFAGNTNFNLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQAIS 155
N+STPLI + S
Sbjct: 114 NISTPLIFHLLNNAS 128
>gi|260577799|ref|ZP_05845733.1| dimethyladenosine transferase [Corynebacterium jeikeium ATCC 43734]
gi|258604026|gb|EEW17269.1| dimethyladenosine transferase [Corynebacterium jeikeium ATCC 43734]
Length = 311
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 4 KALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPG 63
+ +RL IR + + L K+L QNF+ +P KIV+ A + V E+GPG G
Sbjct: 5 RKIRLLGPNEIRQLAEELDLNPTKKLGQNFVHDPNTVRKIVKAADVTADDNVVEIGPGLG 64
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQ---ASPCPVHFHLGDVMSFTMQNMFSED 120
S+T ++L A + +E DPR L + A L D M+ T Q+
Sbjct: 65 SLTLALLE-TGASVTAVEIDPRLAEKLPATLEEQGAGEADAAVILKDAMAVTAQDF---- 119
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERA 175
D LP ++ NLP+NVS P+++ ++ FP R LV+ LE A
Sbjct: 120 --ADAGRPLP-TALVANLPYNVSVPVLLHMLEE------FPSIDRVLVMVQLEVA 165
>gi|423693908|ref|ZP_17668428.1| dimethyladenosine transferase [Pseudomonas fluorescens SS101]
gi|388001371|gb|EIK62700.1| dimethyladenosine transferase [Pseudomonas fluorescens SS101]
Length = 270
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L +L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLL-ASGGQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A + H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFAGKANFNLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI +
Sbjct: 114 NISTPLIFHLLN 125
>gi|359396030|ref|ZP_09189082.1| Ribosomal RNA small subunit methyltransferase A [Halomonas
boliviensis LC1]
gi|357970295|gb|EHJ92742.1| Ribosomal RNA small subunit methyltransferase A [Halomonas
boliviensis LC1]
Length = 285
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 18/158 (11%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL + + +IVR G + + + E+GPG G++T +L L +IE D
Sbjct: 18 RARKRFGQNFLRDLGIISRIVRAVGPRSTDRLVEIGPGQGALTEPLLE-AAGHLEVIELD 76
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L + P V H GD + F + + P +R++GNLP+N+S
Sbjct: 77 RDLIPGLRVQFFNYPDFV-VHEGDALKFDFAALKGDG---------PALRVVGNLPYNIS 126
Query: 144 TPLIIKWIQAIS--ENLLFPKHKRQLVVSLLERACVKP 179
TPLI+ + A S E++ F K ++ER +P
Sbjct: 127 TPLIVHLLAAGSAIEDMHFMLQK-----EVVERLAAEP 159
>gi|429211577|ref|ZP_19202742.1| dimethyladenosine transferase [Pseudomonas sp. M1]
gi|428156059|gb|EKX02607.1| dimethyladenosine transferase [Pseudomonas sp. M1]
Length = 269
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 30/206 (14%)
Query: 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLV 78
+L++ RA K+ QNFL + + +I+R G + E+GPG G++T +++ A+L
Sbjct: 4 ELFQHRARKRFGQNFLHDAGVIHRILRAIAPKEGQHLLEIGPGQGALTEGLVD-SGAQLD 62
Query: 79 LIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138
+IE D P L P H GD + F + + +R++GNL
Sbjct: 63 VIELDLDLIPQLKWRFGLKPN-FRLHQGDALKFDFATLPQAGEK---------LRVVGNL 112
Query: 139 PFNVSTPLIIKWIQ--AISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICL 196
P+N+STPLI ++ I +++ F K ++ER +P ++G++ +
Sbjct: 113 PYNISTPLIFHLLEHAGIIQDMHFMLQK-----EVVERLAAEP-------GGGDWGRLSI 160
Query: 197 AYRDMCEEMPGLYEYTLEDTPGDIEP 222
+ C+ +Y PG P
Sbjct: 161 MVQYFCK-----VDYLFTVGPGAFNP 181
>gi|310657782|ref|YP_003935503.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [[Clostridium]
sticklandii]
gi|308824560|emb|CBH20598.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [[Clostridium]
sticklandii]
Length = 289
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 76/142 (53%), Gaps = 16/142 (11%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI+ Y R K L QNFL + + +IV +A + + V E+GPG G++TR L+ R
Sbjct: 11 KDIVSKYGFRFTKSLGQNFLVDEHVLSQIVDSAEIDSEDTVIEIGPGIGTLTRE-LSYRA 69
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQ---NMFSEDRRRDWSEGLP 130
+++ IE D P L + LA + D++ + N FS DR+
Sbjct: 70 KQVISIEIDKNLIPILSETLADRDNIKIINQ--DILKTDLHELVNEFSPDRK-------- 119
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
++++ NLP+ ++TP+I+++++
Sbjct: 120 -VKVVANLPYYITTPIIMRFLE 140
>gi|229592954|ref|YP_002875073.1| dimethyladenosine transferase [Pseudomonas fluorescens SBW25]
gi|229364820|emb|CAY52848.1| dimethyladenosine transferase [Pseudomonas fluorescens SBW25]
Length = 270
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L +L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLL-ASGGQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ P + H GD + F + + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQQFAGMPN-FNLHQGDALKFDFNTLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI +
Sbjct: 114 NISTPLIFHLLN 125
>gi|169351499|ref|ZP_02868437.1| hypothetical protein CLOSPI_02279 [Clostridium spiroforme DSM 1552]
gi|169291721|gb|EDS73854.1| putative dimethyladenosine transferase [Clostridium spiroforme DSM
1552]
Length = 268
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 8/144 (5%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITR 67
+ + + + I+ Y L ALK+ QNFL + + +KI++ V EVGPG G++T+
Sbjct: 4 IATLSTTKYILDKYNLNALKKYGQNFLIDINVVNKIIKETRIDKDVAVIEVGPGIGALTQ 63
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
+L+R +++ E D RF P D A + F GD M + N D ++ +S+
Sbjct: 64 -MLSRYGGKVISFEIDERFRPVYDEFLIADNLEIIF--GDFMKQEI-NKIVVDLKKTYSK 119
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWI 151
+ ++ NLP+ ++T +I K I
Sbjct: 120 ----VYLVANLPYYITTAIIEKVI 139
>gi|387895972|ref|YP_006326269.1| dimethyladenosine transferase [Pseudomonas fluorescens A506]
gi|387162785|gb|AFJ57984.1| dimethyladenosine transferase [Pseudomonas fluorescens A506]
Length = 270
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L +L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLL-ASGGQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A + H GD + F ++ + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNSLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI +
Sbjct: 114 NISTPLIFHLLN 125
>gi|120556413|ref|YP_960764.1| dimethyladenosine transferase [Marinobacter aquaeolei VT8]
gi|387815790|ref|YP_005431283.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
[Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|226732595|sp|A1U6F8.1|RSMA_MARAV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|120326262|gb|ABM20577.1| dimethyladenosine transferase [Marinobacter aquaeolei VT8]
gi|381340813|emb|CCG96860.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 276
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K+ QNFL +P + ++IVR + + E+GPG G+IT IL P RL ++E D
Sbjct: 8 QARKRFGQNFLHDPGVIERIVRAINPKPEDSIVEIGPGLGAITEEILAINP-RLQVVELD 66
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L P H D +SF + S DR +RI+GNLP+N+S
Sbjct: 67 RDLIPVLRTKFFNYP-EFRIHEADALSFDFSQLVS-DR---------PLRIVGNLPYNIS 115
Query: 144 TPLIIKWI 151
TPLI +
Sbjct: 116 TPLIFHLL 123
>gi|56961852|ref|YP_173574.1| dimethyladenosine transferase [Bacillus clausii KSM-K16]
gi|62900485|sp|Q5WLW2.1|RSMA_BACSK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|56908086|dbj|BAD62613.1| dimethyladenosine transferase [Bacillus clausii KSM-K16]
Length = 296
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 17/190 (8%)
Query: 17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPAR 76
I+K + K L QNFL + + KIV +G + + E+GPG G++T L ++ +
Sbjct: 16 ILKKHGFTLKKSLGQNFLIDLNILAKIVEASGFDEQDGIVEIGPGIGALTEQ-LAKKADK 74
Query: 77 LVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIG 136
+V E D R P L+ A P H DV+ + + ++S+G I ++
Sbjct: 75 VVAFEIDGRLIPVLEDTLSAYPNVKIIH-SDVLKADLPGVLDA----EFSKG-QAIHVVA 128
Query: 137 NLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICL 196
NLP+ V+TP+++K ++ + L F + + ER KP +E+G + +
Sbjct: 129 NLPYYVTTPILMKLLE---DRLPFKSITVMIQAEVAERIAAKP-------GSKEYGALSI 178
Query: 197 AYRDMCEEMP 206
A + E P
Sbjct: 179 AAQYYAEAKP 188
>gi|406593242|ref|YP_006740421.1| dimethyladenosine transferase [Chlamydia psittaci NJ1]
gi|405789114|gb|AFS27856.1| dimethyladenosine transferase [Chlamydia psittaci NJ1]
Length = 278
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 16/124 (12%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K LSQNFL + + KI+ + G+ V E+GPG G++T ++N + A +V +EKDP F
Sbjct: 22 KGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVN-QGAHVVALEKDPMF 80
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEGLPGIRIIGNLPFNVSTP 145
L L P+H + D + + + +D+R W +G R++ NLP++V+TP
Sbjct: 81 EETLKQL------PIHLEITDACKYPLSQL--QDKR--WQGKG----RVVANLPYHVTTP 126
Query: 146 LIIK 149
L+ K
Sbjct: 127 LLTK 130
>gi|125974582|ref|YP_001038492.1| dimethyladenosine transferase [Clostridium thermocellum ATCC 27405]
gi|256004056|ref|ZP_05429041.1| dimethyladenosine transferase [Clostridium thermocellum DSM 2360]
gi|281419107|ref|ZP_06250124.1| dimethyladenosine transferase [Clostridium thermocellum JW20]
gi|385780020|ref|YP_005689185.1| dimethyladenosine transferase [Clostridium thermocellum DSM 1313]
gi|419721365|ref|ZP_14248529.1| Ribosomal RNA small subunit methyltransferase A [Clostridium
thermocellum AD2]
gi|419726857|ref|ZP_14253877.1| Ribosomal RNA small subunit methyltransferase A [Clostridium
thermocellum YS]
gi|125714807|gb|ABN53299.1| dimethyladenosine transferase [Clostridium thermocellum ATCC 27405]
gi|255991979|gb|EEU02076.1| dimethyladenosine transferase [Clostridium thermocellum DSM 2360]
gi|281407256|gb|EFB37517.1| dimethyladenosine transferase [Clostridium thermocellum JW20]
gi|316941700|gb|ADU75734.1| dimethyladenosine transferase [Clostridium thermocellum DSM 1313]
gi|380769822|gb|EIC03722.1| Ribosomal RNA small subunit methyltransferase A [Clostridium
thermocellum YS]
gi|380782535|gb|EIC12169.1| Ribosomal RNA small subunit methyltransferase A [Clostridium
thermocellum AD2]
Length = 284
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 13/147 (8%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
+ + +I+ Y L+ K L QNFL + + +IV A + V E+GPG GS+T L +
Sbjct: 4 NTKKLIQKYNLKLTKSLGQNFLIDDNIVKRIVDVAEITEKDLVIEIGPGVGSMTVE-LAK 62
Query: 73 RPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
R ++V +E D R P L D L + S + D+M + E
Sbjct: 63 RAGKVVAVEIDKRLIPALEDNLGEFSNVDIINK--DIMDVNINEFRGES---------GN 111
Query: 132 IRIIGNLPFNVSTPLIIKWIQAISENL 158
++++ NLP+ ++TP+I+K ++ ++N+
Sbjct: 112 VKVVANLPYYITTPIIMKLLEENNDNI 138
>gi|408479337|ref|ZP_11185556.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. R81]
Length = 270
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L +L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLL-ASGGQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ P + H GD + F + + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQQFADKPN-FNLHQGDALKFDFNTLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI +
Sbjct: 114 NISTPLIFHLLN 125
>gi|330505265|ref|YP_004382134.1| dimethyladenosine transferase [Pseudomonas mendocina NK-01]
gi|328919551|gb|AEB60382.1| dimethyladenosine transferase [Pseudomonas mendocina NK-01]
Length = 269
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R + E+GPG G+IT +L A+L +I
Sbjct: 4 YQHRARKRFGQNFLHDAGVIDRILRAIRAKEDERLLEIGPGQGAITEGLLG-SGAQLDVI 62
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L A+P + GD + F + + R +R++GNLP+
Sbjct: 63 ELDLDLIPILQNKFGANPR-FRLNQGDALKFDFARLEAAPR---------SLRVVGNLPY 112
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 113 NISTPLIFHLL 123
>gi|33242431|ref|NP_877372.1| dimethyladenosine transferase [Chlamydophila pneumoniae TW-183]
gi|33236942|gb|AAP99029.1| dimethyladenosine transferase [Chlamydophila pneumoniae TW-183]
Length = 277
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 14/123 (11%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K LSQNFL + + KIV + I + V E+GPG G++T ++ A+++ IEKDP F
Sbjct: 22 KSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAG-AQVIAIEKDPMF 80
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P L+ L P+ + D + + D+ ++++ G R++ NLP++++TPL
Sbjct: 81 APSLEEL------PIRLEIIDACKYPL------DQLQEYTTLGKG-RVVANLPYHITTPL 127
Query: 147 IIK 149
+ K
Sbjct: 128 LTK 130
>gi|312963419|ref|ZP_07777901.1| dimethyladenosine transferase [Pseudomonas fluorescens WH6]
gi|311282225|gb|EFQ60824.1| dimethyladenosine transferase [Pseudomonas fluorescens WH6]
Length = 270
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L +L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLL-ASGGQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ A + H GD + F + + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQ-QFAGKSNFNLHQGDALKFDFNTLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWIQ 152
N+STPLI +
Sbjct: 114 NISTPLIFHLLN 125
>gi|296329543|ref|ZP_06872029.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305672740|ref|YP_003864411.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296153286|gb|EFG94149.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305410983|gb|ADM36101.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 292
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + D+IV +A V E+GPG G++T I +R
Sbjct: 12 KEILKKYCFSFKKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQI-AKRA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ V DV+ ++++ E++ +D E I
Sbjct: 71 KKVVAFEIDQRLLPILKDTLSPYDNVTVIHQ--DVLKADVKSVI-EEQFQDCDE----IM 123
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
++ NLP+ V+TP+I+K ++ E+L L + ER P S +E+G
Sbjct: 124 VVANLPYYVTTPIIMKLLE---EHLPLKGIVVMLQKEVAERMAADP-------SSKEYGS 173
Query: 194 ICLAYRDMCE 203
+ +A + E
Sbjct: 174 LSIAVQFYTE 183
>gi|110834909|ref|YP_693768.1| ribosomal RNA adenine dimethylase [Alcanivorax borkumensis SK2]
gi|122064277|sp|Q0VMV2.1|RSMA_ALCBS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|110648020|emb|CAL17496.1| Ribosomal RNA adenine dimethylase [Alcanivorax borkumensis SK2]
Length = 280
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 28/183 (15%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
R K+ Q+FL + L D+++R G TG+ + E+GPG G++T +L P L ++E D
Sbjct: 5 RTRKRFGQHFLHDRNLVDRMIRTLGLQTGDTLVEIGPGRGALTYPLLEELP-HLHVVELD 63
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L + +P + H D + F + + D+ +R+IGNLP+N+S
Sbjct: 64 RDLIALLRQ--ENTPERLTIHESDALRFDFRTLKPADK---------PLRVIGNLPYNIS 112
Query: 144 TPLIIKWI---QAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 200
TPLI + AIS+ L ++ER P +++G++ + +
Sbjct: 113 TPLIFHLLAQADAISDMTFM------LQKEVVERLTASP-------GTRDWGRLSIMVQY 159
Query: 201 MCE 203
C+
Sbjct: 160 HCQ 162
>gi|386817169|ref|ZP_10104387.1| dimethyladenosine transferase [Thiothrix nivea DSM 5205]
gi|386421745|gb|EIJ35580.1| dimethyladenosine transferase [Thiothrix nivea DSM 5205]
Length = 260
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 26/202 (12%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y +A K+ Q+FL + + DK++R + V E+GPGPG++T +L P RL ++
Sbjct: 4 YAHQAKKRFGQHFLHDRNIIDKMLRALSLQPTDRVVEIGPGPGALTFPLLEMLP-RLDVV 62
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D QA +H H D + + + R SE L R+IGNLP+
Sbjct: 63 EIDRDVIAWWQEQPQAQ-GKLHIHAQDALKLDIPGL------RGDSEPL---RLIGNLPY 112
Query: 141 NVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 200
N+STPLI ++Q +H R ++ L + + P + +++ ++ + +
Sbjct: 113 NISTPLIFHFLQ-------HREHIRDMLFMLQKEVVDRITAEP---NSKDYSRLSVMVQY 162
Query: 201 MCEEMPGLYEYTLEDTPGDIEP 222
CE Y L+ PG P
Sbjct: 163 YCET-----HYLLKIGPGAFSP 179
>gi|354585782|ref|ZP_09004613.1| dimethyladenosine transferase [Paenibacillus lactis 154]
gi|353184107|gb|EHB49635.1| dimethyladenosine transferase [Paenibacillus lactis 154]
Length = 294
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++II + K L QNFL + + KIV AG E+GPG G++T L +
Sbjct: 14 KEIIARHGFSFKKSLGQNFLIDQNILGKIVEAAGLDKEKGALEIGPGIGALTEK-LAQMA 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
+ +E D R P L + + V H GDV+ + +F R+D++E + + +
Sbjct: 73 GAVTAVEIDQRLIPILKEVLEPYDN-VKVHHGDVLKVDLHELF----RQDFAE-VGKVSV 126
Query: 135 IGNLPFNVSTPLIIKWIQ 152
+ NLP+ V+TP+++K ++
Sbjct: 127 VANLPYYVTTPILMKLLE 144
>gi|339319885|ref|YP_004679580.1| dimethyladenosine transferase [Candidatus Midichloria mitochondrii
IricVA]
gi|338226010|gb|AEI88894.1| dimethyladenosine transferase [Candidatus Midichloria mitochondrii
IricVA]
Length = 271
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 19/149 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
M ++ I Y + K+L QNFL + + IV A ++ V E+GPG GS+TR +L
Sbjct: 1 MNYVKKIAADYNIIPTKKLGQNFLIDESVVANIVFMAN-VSDATVLEIGPGVGSLTRELL 59
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHL----GDVMSFTMQNMFSEDRRRDWS 126
P +++ IE D L++L + +L D + +++ + + +
Sbjct: 60 KAGPKKVIAIEFDKNCITGLELLKNQ-----YLNLETINADALKIQEEDLVAANEK---- 110
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
I+++ NLP+N+ T L+IKW++ I+
Sbjct: 111 -----IKVVANLPYNIGTALLIKWLKKIN 134
>gi|385800663|ref|YP_005837067.1| dimethyladenosine transferase [Halanaerobium praevalens DSM 2228]
gi|309390027|gb|ADO77907.1| dimethyladenosine transferase [Halanaerobium praevalens DSM 2228]
Length = 297
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 42/202 (20%)
Query: 12 PSI-RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPGSITRSI 69
PS+ + I+ Y L K L QNFL + + + I+ ++ I G+E + E+GPG GS+T+SI
Sbjct: 8 PSVTKKILNKYNLNLKKSLGQNFLVDQNIIE-IISSSAAIKGDEFIIEIGPGIGSLTQSI 66
Query: 70 LNR-RPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRR-DWS 126
LN+ + L+ +EKD L D+ A+ + + ++D + DW
Sbjct: 67 LNKLKTGNLLAVEKDAAMVEVLNDIFAEENKL---------------TLINQDALKIDWP 111
Query: 127 EGL-------PGIRIIGNLPFNVSTPLIIKWIQAIS--ENLLFPKHKRQLVVSLLERACV 177
E L ++++ NLP+ V+TP+I+ +++ EN++F K + ER C
Sbjct: 112 EILEKYNPEKKKVKLLANLPYYVTTPIIMGVLESEIELENMVFMVQKE-----VGERICA 166
Query: 178 KPILRPYQLSVQEFGQICLAYR 199
P ++FG + +A +
Sbjct: 167 GP-------ETKKFGSLSVAVQ 181
>gi|374307434|ref|YP_005053865.1| dimethyladenosine transferase [Filifactor alocis ATCC 35896]
gi|320120297|gb|EFE28598.2| dimethyladenosine transferase [Filifactor alocis ATCC 35896]
Length = 286
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 76/146 (52%), Gaps = 10/146 (6%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITR 67
L ++++I K Y + K L QNFL + + KIV +A + V EVG G G++TR
Sbjct: 5 LATFVTLKEITKKYGFQFTKSLGQNFLVDTNILQKIVDSADIQEEDIVIEVGTGIGTLTR 64
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
L +R ++ IE D + P + ++ + F D + ++++ E R+
Sbjct: 65 E-LAKRAKKVYAIEIDKKLIPIVKE-TTSNYNNIDFVNMDFLEVVLEDLIQEKDRK---- 118
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWIQA 153
I++I N+P+ ++TP+I+K +++
Sbjct: 119 ----IKVIANIPYYITTPIIMKCLES 140
>gi|254373987|ref|ZP_04989469.1| dimethyladenosine transferase [Francisella novicida GA99-3548]
gi|151571707|gb|EDN37361.1| dimethyladenosine transferase [Francisella novicida GA99-3548]
Length = 262
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
YK +A K L QNFL + + KIV+ A N V E+GPG G++TR +L+ + ++
Sbjct: 3 YKTKAKKSLGQNFLQDENIIRKIVQLANIKKHNIVVEIGPGLGALTRYLLS-SSNNVSVV 61
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D L Q P H + D + F + ++ + ++ I++IGNLP+
Sbjct: 62 EFDASVIDTLIANCQKYGTP-HIYNQDFLKFDISSLENSSNQK--------IKLIGNLPY 112
Query: 141 NVSTPLIIKWIQ 152
N+S+P++ K I+
Sbjct: 113 NISSPILFKVIK 124
>gi|452972522|gb|EME72352.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sonorensis L12]
Length = 292
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 25/193 (12%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+ Y K L QNFL + + D+IV +A V E+GPG G++T L +R
Sbjct: 12 KEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTERTGVIEIGPGIGALTEQ-LAKRA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-- 131
++V E D R P L D L SP D ++ Q++ D + E G
Sbjct: 71 KKVVAFEIDQRLLPILEDTL---SPY-------DNVTVIHQDVLKADIKAVMDEQFQGCD 120
Query: 132 -IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQE 190
+ ++ NLP+ V+TP+I+K ++ E+L L + +R KP S +E
Sbjct: 121 EVMVVANLPYYVTTPIIMKLLE---EHLPLKGIVVMLQKEVADRMAAKP-------SSKE 170
Query: 191 FGQICLAYRDMCE 203
+G + +A + E
Sbjct: 171 YGSLSIAVQFYTE 183
>gi|373850578|ref|ZP_09593379.1| Ribosomal RNA small subunit methyltransferase A [Opitutaceae
bacterium TAV5]
gi|372476743|gb|EHP36752.1| Ribosomal RNA small subunit methyltransferase A [Opitutaceae
bacterium TAV5]
Length = 289
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 13/180 (7%)
Query: 29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTP 88
L QNFL + + K + AG G+ V E+GPG G++TR++L A + +E+D
Sbjct: 23 LGQNFLVDGNIVKKSLELAGVAPGDTVVEIGPGLGTLTRALLEAG-ACVWAVERDATLHA 81
Query: 89 CL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLI 147
L LA+ P H GD + + + D S P +I+ NLP+ +STP
Sbjct: 82 HLAGTLAKEFPATFHLLEGDAVEHPLAALPVGKEEADSSTSAPAFKIVANLPYAISTP-- 139
Query: 148 IKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPG 207
W+ A+ L + L + +R +P + FG I + ++ + PG
Sbjct: 140 --WMDAVLSGPLPARMVLMLQLEAAQRYTAQP-------GTKLFGAISVFLQNAFDAAPG 190
>gi|399546568|ref|YP_006559876.1| ribosomal RNA small subunit methyltransferase A [Marinobacter sp.
BSs20148]
gi|399161900|gb|AFP32463.1| Ribosomal RNA small subunit methyltransferase A [Marinobacter sp.
BSs20148]
Length = 277
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K+ QNFL +P + ++IVR+ + E+GPG G+IT IL P RL ++E D
Sbjct: 8 QARKRFGQNFLHDPGVIERIVRSIAPKPDQSIVEIGPGLGAITEEILAINP-RLQVVELD 66
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L P H D + F + E +RIIGNLP+N+S
Sbjct: 67 RDLIPILRTKFFNYP-EFRIHQADALKFDFNELVGEQP----------LRIIGNLPYNIS 115
Query: 144 TPLIIKWI 151
TPLI +
Sbjct: 116 TPLIFHLL 123
>gi|392422719|ref|YP_006459323.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas stutzeri CCUG 29243]
gi|390984907|gb|AFM34900.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas stutzeri CCUG 29243]
Length = 264
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + +I+R G + E+GPG G++T +L+ A L ++
Sbjct: 4 YQHRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLD-SGAHLDVV 62
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L A + H GD + F + +E +RI+GNLP+
Sbjct: 63 ELDLDLIPILQG-KFAGRENFNLHQGDALKFDFGRLSAEPN---------SLRIVGNLPY 112
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 113 NISTPLIFHLL 123
>gi|304311710|ref|YP_003811308.1| Dimethyladenosine transferase [gamma proteobacterium HdN1]
gi|301797443|emb|CBL45663.1| Dimethyladenosine transferase [gamma proteobacterium HdN1]
Length = 279
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K+ QNFL +P + D IV + + E+GPG G++T ++L +L IE D
Sbjct: 15 KRFGQNFLHDPHVIDSIVAAVNPQKSDNLVEIGPGQGALTGALLPYL-DQLQAIELDRDL 73
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P L + + A+ +H H D + F + D++ +R++GNLP+N+STPL
Sbjct: 74 IPYL-LASFATTGKLHIHQADALRFDFGTLIHPDKK---------LRVVGNLPYNISTPL 123
Query: 147 IIKWIQAIS 155
+ + S
Sbjct: 124 LFHLLDYAS 132
>gi|126664694|ref|ZP_01735678.1| dimethyladenosine transferase [Marinobacter sp. ELB17]
gi|126631020|gb|EBA01634.1| dimethyladenosine transferase [Marinobacter sp. ELB17]
Length = 277
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K+ QNFL +P + ++IVR+ + E+GPG G+IT IL P RL ++E D
Sbjct: 8 QARKRFGQNFLHDPGVIERIVRSIAPKPDQSIVEIGPGLGAITAEILAVNP-RLQVVELD 66
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L P H D + F + E +RIIGNLP+N+S
Sbjct: 67 RDLIPILRTKFFNYP-EFRIHQADALKFDFNELVGEQP----------LRIIGNLPYNIS 115
Query: 144 TPLIIKWI 151
TPLI +
Sbjct: 116 TPLIFHLL 123
>gi|384173702|ref|YP_005555087.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349592926|gb|AEP89113.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 292
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + ++IV +A V E+GPG G++T L +R
Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILNRIVDHAEVTKKTGVIEIGPGIGALTEQ-LAKRA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ V DV+ ++++ E++ +D E I
Sbjct: 71 KKVVAFEIDQRLLPILKDTLSPYDNVTVIHQ--DVLKADVKSVI-EEQFQDCDE----IM 123
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
++ NLP+ V+TP+I+K ++ E+L L + ER P S +E+G
Sbjct: 124 VVANLPYYVTTPIIMKLLE---EHLPLKGIVVMLQKEVAERMAADP-------SSKEYGS 173
Query: 194 ICLAYRDMCE 203
+ +A + E
Sbjct: 174 LSIAVQFYTE 183
>gi|315644358|ref|ZP_07897498.1| dimethyladenosine transferase [Paenibacillus vortex V453]
gi|315280235|gb|EFU43527.1| dimethyladenosine transferase [Paenibacillus vortex V453]
Length = 294
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++II + K L QNFL + + KIV AG E+GPG G++T L +
Sbjct: 14 KEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTEK-LAQTA 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
+ IE D R P L + + V H GDV+ + +F +D G+ + +
Sbjct: 73 GTVTAIEIDQRLIPILREVLEPYEN-VKVHHGDVLKVDLHELFQQD-----FGGVSKVSV 126
Query: 135 IGNLPFNVSTPLIIKWIQ 152
+ NLP+ V+TP+++K ++
Sbjct: 127 VANLPYYVTTPILMKLLE 144
>gi|426401389|ref|YP_007020361.1| dimethyladenosine transferase [Candidatus Endolissoclinum patella
L2]
gi|425858057|gb|AFX99093.1| dimethyladenosine transferase [Candidatus Endolissoclinum patella
L2]
Length = 274
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P IR+II ++ A K L Q+FLF+ L +I R AG ++ E+GPGPG +TR +L
Sbjct: 2 LPPIREIISAGRISARKSLGQHFLFDINLARRIARLAGDMSTGTTIEIGPGPGGLTRGLL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++V +E D R L L A+ + D + + R
Sbjct: 62 LEGARKVVAVEIDSRANNFLKSLITAASGRLTLIKEDALKVNFTAISQPPR--------- 112
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
I+ NLP+N++T +++ ++
Sbjct: 113 --HIVANLPYNIATRILLTLLR 132
>gi|386756622|ref|YP_006229838.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus sp.
JS]
gi|449092755|ref|YP_007425246.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
XF-1]
gi|384929904|gb|AFI26582.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sp. JS]
gi|449026670|gb|AGE61909.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
XF-1]
Length = 292
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + ++IV +A V E+GPG G++T L +R
Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQ-LAKRA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ V DV+ ++++ E++ +D E I
Sbjct: 71 KKVVAFEIDQRLLPILKDTLSPYDNVTVIHQ--DVLKADVKSVI-EEQFQDCDE----IM 123
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
++ NLP+ V+TP+I+K ++ E+L L + ER P S +E+G
Sbjct: 124 VVANLPYYVTTPIIMKLLE---EHLPLKGIVVMLQKEVAERMAADP-------SSKEYGS 173
Query: 194 ICLAYRDMCE 203
+ +A + E
Sbjct: 174 LSIAVQFYTE 183
>gi|406594510|ref|YP_006741460.1| dimethyladenosine transferase [Chlamydia psittaci MN]
gi|405782942|gb|AFS21690.1| dimethyladenosine transferase [Chlamydia psittaci MN]
Length = 278
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 16/124 (12%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K LSQNFL + + KI+ + G+ V E+GPG G++T ++N + A +V +EKDP F
Sbjct: 22 KGLSQNFLIDGNILRKILAVSCVQAGDRVLEIGPGFGALTEVLVN-QGAHVVALEKDPMF 80
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEGLPGIRIIGNLPFNVSTP 145
L L P+H + D + + S+ + + W +G R++ NLP++V+TP
Sbjct: 81 EETLKQL------PIHLEITDACKYPL----SQLQDKGWQGKG----RVVANLPYHVTTP 126
Query: 146 LIIK 149
L+ K
Sbjct: 127 LLTK 130
>gi|334338746|ref|YP_004543726.1| dimethyladenosine transferase [Desulfotomaculum ruminis DSM 2154]
gi|334090100|gb|AEG58440.1| dimethyladenosine transferase [Desulfotomaculum ruminis DSM 2154]
Length = 292
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
++R+II + + K L QNFL + + DKIV+ A + E+GPG G +TR L R
Sbjct: 9 AVREIINAHGFKVRKALGQNFLMDANIIDKIVQAANLSEQDLAFEIGPGLGVLTRR-LAR 67
Query: 73 RPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
+++ +E D P L + LA ++ V H GD + + SE +
Sbjct: 68 SAGKVLAVEIDRNLLPILKETLADSAGAEV-IH-GDALKLDFDRLASEKTGGIFGSRARA 125
Query: 132 IRIIGNLPFNVSTPLIIKWI 151
+++ NLP+ ++TPL+I +
Sbjct: 126 YKLVANLPYYITTPLLIHLL 145
>gi|300814328|ref|ZP_07094600.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|300511595|gb|EFK38823.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 288
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 24/208 (11%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RL + +I+K Y R K L QNFL + + KIV +A + V E+GPG G++T
Sbjct: 3 RLFKPKRVSEILKKYNFRFSKTLGQNFLIDGNIVRKIVDSAEVSEADNVLEIGPGIGTLT 62
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDW 125
L R ++V IE D R D+L + P V D + ++ + E+ +
Sbjct: 63 EE-LALRAKKVVSIEIDKRLK---DLLEETLPYDNVKIIYKDFLKLDLKTLIDEEFKG-- 116
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQ 185
+++ NLP+ ++TP+I E LL +++ ++++ K Q
Sbjct: 117 ----QNFKVVANLPYYITTPII--------EKLLLNSENIEIINVMIQKEVAKRF--TAQ 162
Query: 186 LSVQEFGQICLAYRDMCEEMPGLYEYTL 213
+++G + + + C+ YE+T+
Sbjct: 163 PQTKDYGSLSVFIQFFCK---AFYEFTV 187
>gi|321313712|ref|YP_004205999.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus subtilis BSn5]
gi|320019986|gb|ADV94972.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus subtilis BSn5]
Length = 292
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + ++IV +A V E+GPG G++T L +R
Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQ-LAKRA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ V DV+ ++++ E++ +D E I
Sbjct: 71 KKVVAFEIDQRLLPILKDTLSPYDNVTVIHQ--DVLKADVKSVI-EEQFQDCDE----IM 123
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
++ NLP+ V+TP+I+K ++ E+L L + ER P S +E+G
Sbjct: 124 VVANLPYYVTTPIIMKLLE---EHLPLKGIVVMLQKEVAERMAADP-------SSKEYGS 173
Query: 194 ICLAYRDMCE 203
+ +A + E
Sbjct: 174 LSIAVQFYTE 183
>gi|383935348|ref|ZP_09988784.1| ribosomal RNA small subunit methyltransferase A [Rheinheimera
nanhaiensis E407-8]
gi|383703442|dbj|GAB58875.1| ribosomal RNA small subunit methyltransferase A [Rheinheimera
nanhaiensis E407-8]
Length = 270
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 30/201 (14%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL +P + +IV+ + + + E+GPG G++T + L +IE D
Sbjct: 10 RARKRFGQNFLHDPAIIGRIVKAIAPKSDDILVEIGPGLGALTEPV-AELAGHLTVIELD 68
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L Q + + H D M F + E ++ +++ GNLP+N+S
Sbjct: 69 RDLAERLTQHPQLA-SKLTIHQADAMKFDFTTLLREGKK---------LKVFGNLPYNIS 118
Query: 144 TPLIIKWIQA--ISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDM 201
TPL+ Q + EN+ F +L++ V + + + FG++ + +
Sbjct: 119 TPLLFHLFQYADLIENMHF----------MLQKEVVDRMTASH--GSKAFGRLSVMTQYY 166
Query: 202 CEEMPGLYEYTLEDTPGDIEP 222
C+ MP +E PG +P
Sbjct: 167 CQAMP-----VVEVGPGAFKP 182
>gi|229917418|ref|YP_002886064.1| dimethyladenosine transferase [Exiguobacterium sp. AT1b]
gi|229468847|gb|ACQ70619.1| dimethyladenosine transferase [Exiguobacterium sp. AT1b]
Length = 292
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 97/198 (48%), Gaps = 22/198 (11%)
Query: 14 IRDIIKLYKLRAL---------KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
++DI + + +A+ K L QNFL + + KIV A + V E+GPG GS
Sbjct: 1 MKDIATIQRTKAILERHGFSFKKSLGQNFLIDLNILSKIVGAAELSEVSGVLEIGPGIGS 60
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRR 123
+T +R ++V +E D R P LD SP P V GD + ++ + ++
Sbjct: 61 LTEQ-SAKRAKKVVALEIDQRLLPILD--DTMSPYPHVKVIHGDALELDLREIVEQEF-- 115
Query: 124 DWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRP 183
+EG+ I ++ NLP+ V+TP+I++ +++ + F + + ER KP +
Sbjct: 116 -LNEGIEDISVVANLPYYVTTPIIMRLLES---GVKFRSLVMMIQKEVAERIGAKPGTKA 171
Query: 184 Y---QLSVQEFGQICLAY 198
Y +++Q + + +++
Sbjct: 172 YGSLSIAIQYYAEAEVSF 189
>gi|16077110|ref|NP_387923.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221307851|ref|ZP_03589698.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221312173|ref|ZP_03593978.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221317106|ref|ZP_03598400.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221321369|ref|ZP_03602663.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. SMY]
gi|402774285|ref|YP_006628229.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
QB928]
gi|418030613|ref|ZP_12669098.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|428277456|ref|YP_005559191.1| dimethyladenosine transferase [Bacillus subtilis subsp. natto
BEST195]
gi|452912626|ref|ZP_21961254.1| dimethyladenosine transferase [Bacillus subtilis MB73/2]
gi|585375|sp|P37468.1|RSMA_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|467431|dbj|BAA05277.1| high level kasgamycin resistance [Bacillus subtilis]
gi|2632309|emb|CAB11818.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
subsp. subtilis str. 168]
gi|291482413|dbj|BAI83488.1| dimethyladenosine transferase [Bacillus subtilis subsp. natto
BEST195]
gi|351471672|gb|EHA31785.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402479471|gb|AFQ55980.1| Dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
QB928]
gi|407955733|dbj|BAM48973.1| dimethyladenosine transferase [Bacillus subtilis BEST7613]
gi|407963004|dbj|BAM56243.1| dimethyladenosine transferase [Bacillus subtilis BEST7003]
gi|452117654|gb|EME08048.1| dimethyladenosine transferase [Bacillus subtilis MB73/2]
Length = 292
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + ++IV +A V E+GPG G++T L +R
Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQ-LAKRA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ V DV+ ++++ E++ +D E I
Sbjct: 71 KKVVAFEIDQRLLPILKDTLSPYENVTVIHQ--DVLKADVKSVI-EEQFQDCDE----IM 123
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
++ NLP+ V+TP+I+K ++ E+L L + ER P S +E+G
Sbjct: 124 VVANLPYYVTTPIIMKLLE---EHLPLKGIVVMLQKEVAERMAADP-------SSKEYGS 173
Query: 194 ICLAYRDMCE 203
+ +A + E
Sbjct: 174 LSIAVQFYTE 183
>gi|78357102|ref|YP_388551.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Desulfovibrio
alaskensis G20]
gi|119365022|sp|Q30ZP0.1|RSMA_DESDG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|78219507|gb|ABB38856.1| dimethyladenosine transferase [Desulfovibrio alaskensis G20]
Length = 280
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K L QNFL + ++ KIV + V E+GPGPG++T I PA L L+EKD
Sbjct: 19 RAKKSLGQNFLQDKNISAKIVAALQIGPADCVIEIGPGPGALTDFIQKAAPASLWLLEKD 78
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
+ +P L D ++F + + S+D R W ++IGNLP+NV+
Sbjct: 79 TYWAGEHRRSDSRTPVEKQVVLTDALTFPWERL-SDD--RSW-------KLIGNLPYNVA 128
Query: 144 TPLI 147
+PL+
Sbjct: 129 SPLM 132
>gi|78067504|ref|YP_370273.1| dimethyladenosine transferase [Burkholderia sp. 383]
gi|119365010|sp|Q39D37.1|RSMA_BURS3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|77968249|gb|ABB09629.1| dimethyladenosine transferase [Burkholderia sp. 383]
Length = 275
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 27/187 (14%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
A K+ QNFL + + D IV G G + E+GPG G++T ++ R P V
Sbjct: 12 ARKRFGQNFLVDHGVIDSIVSTIGPARGQRMVEIGPGLGALTEPLIERLATPESPLHAVE 71
Query: 80 IEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
+++D + L Q + H GD ++F +++ + + P +RI+GNLP
Sbjct: 72 LDRD-----LIGRLQQRFGALLELHAGDALAFDFRSLAAPGDK-------PSLRIVGNLP 119
Query: 140 FNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSVQEFGQICLAY 198
+N+S+PL+ + + + +H L ++ER +P + + +LSV L Y
Sbjct: 120 YNISSPLLFHLM--TFADAVIDQHF-MLQNEVVERMVAEPGTKAFSRLSV------MLQY 170
Query: 199 RDMCEEM 205
R + E+M
Sbjct: 171 RYVMEKM 177
>gi|115352811|ref|YP_774650.1| dimethyladenosine transferase [Burkholderia ambifaria AMMD]
gi|122322257|sp|Q0BC07.1|RSMA_BURCM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|115282799|gb|ABI88316.1| dimethyladenosine transferase [Burkholderia ambifaria AMMD]
Length = 276
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 39/193 (20%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
A K+ QNFL + + D IV G G + E+GPG G++T ++ R P V
Sbjct: 12 ARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPESPLHAVE 71
Query: 80 IEKD------PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++D RF P L++ H GD ++F +++ + + P +R
Sbjct: 72 LDRDLIGRLQQRFGPLLEL-----------HAGDALAFDFRSLAAPGDK-------PSLR 113
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSVQEFG 192
I+GNLP+N+S+PL+ + + + +H L ++ER +P + + +LSV
Sbjct: 114 IVGNLPYNISSPLLFHLM--TFADAVIDQHF-MLQNEVVERMVAEPGTKAFSRLSV---- 166
Query: 193 QICLAYRDMCEEM 205
L YR + E+M
Sbjct: 167 --MLQYRYVMEKM 177
>gi|384449758|ref|YP_005662360.1| dimethyladenosine transferase [Chlamydophila pneumoniae LPCoLN]
gi|269302858|gb|ACZ32958.1| dimethyladenosine transferase [Chlamydophila pneumoniae LPCoLN]
Length = 277
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 14/123 (11%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K LSQNFL + + KIV + I + V E+GPG G++T ++ A+++ IEKDP F
Sbjct: 22 KSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAG-AQVIAIEKDPMF 80
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P L+ L P+ + D + + D+ +++ G R++ NLP++++TPL
Sbjct: 81 APSLEEL------PIRLEIIDACKYPL------DQLQEYKTLGKG-RVVANLPYHITTPL 127
Query: 147 IIK 149
+ K
Sbjct: 128 LTK 130
>gi|171317313|ref|ZP_02906509.1| dimethyladenosine transferase [Burkholderia ambifaria MEX-5]
gi|171097512|gb|EDT42350.1| dimethyladenosine transferase [Burkholderia ambifaria MEX-5]
Length = 276
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 39/193 (20%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
A K+ QNFL + + D IV G G + E+GPG G++T ++ R P V
Sbjct: 12 ARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPESPLHAVE 71
Query: 80 IEKD------PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++D RF P L++ H GD ++F +++ + + P +R
Sbjct: 72 LDRDLIGRLQQRFGPLLEL-----------HAGDALAFDFRSLAAPGDK-------PSLR 113
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSVQEFG 192
I+GNLP+N+S+PL+ + + + +H L ++ER +P + + +LSV
Sbjct: 114 IVGNLPYNISSPLLFHLM--TFADAVIDQHF-MLQNEVVERMVAEPGTKAFSRLSV---- 166
Query: 193 QICLAYRDMCEEM 205
L YR + E+M
Sbjct: 167 --MLQYRYVMEKM 177
>gi|343524108|ref|ZP_08761068.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 175 str.
F0384]
gi|343399089|gb|EGV11614.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 175 str.
F0384]
Length = 364
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 12/145 (8%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R + + +R K L QNF+ + +IV++AG + V E+GPG GS+T ++L
Sbjct: 70 VRGLSQALGIRPTKTLGQNFVHDAGTVRRIVKSAGVRPQDTVLEIGPGLGSLTLALLETG 129
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHL----GDVMSFTMQNMFSEDRRRDWSEGL 129
AR++ +E DP L + P L D +S T + E G
Sbjct: 130 -ARVIAVEIDPALARALPVTVADRMPPAAGRLTLIQADALSITGPDSLGE-------AGP 181
Query: 130 PGIRIIGNLPFNVSTPLIIKWIQAI 154
P R++ NLP+NV+ P+++ ++A+
Sbjct: 182 PPTRLVANLPYNVAVPVLLTALEAL 206
>gi|423399550|ref|ZP_17376746.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG2X1-1]
gi|423410242|ref|ZP_17387389.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG2X1-3]
gi|401643606|gb|EJS61302.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG2X1-1]
gi|401649051|gb|EJS66641.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG2X1-3]
Length = 292
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI++ Y K L QNFL + + ++IV +A + + E+GPG G++T L +R
Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHADIGSESGAIEIGPGIGALTEQ-LAKRA 69
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P LD LA S V DV+ + +FSE + EG +
Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYSNVTVINK--DVLKADVHEVFSE----QFEEG-QDVM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP++ K ++
Sbjct: 123 VVANLPYYITTPILFKLLE 141
>gi|170699175|ref|ZP_02890228.1| dimethyladenosine transferase [Burkholderia ambifaria IOP40-10]
gi|170135900|gb|EDT04175.1| dimethyladenosine transferase [Burkholderia ambifaria IOP40-10]
Length = 276
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 39/193 (20%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
A K+ QNFL + + D IV G G + E+GPG G++T ++ R P V
Sbjct: 12 ARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIARLATPESPLHAVE 71
Query: 80 IEKD------PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++D RF P L++ H GD ++F +++ + + P +R
Sbjct: 72 LDRDLIGRLQQRFGPLLEL-----------HAGDALAFDFRSLAAPGDK-------PSLR 113
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSVQEFG 192
I+GNLP+N+S+PL+ + + + +H L ++ER +P + + +LSV
Sbjct: 114 IVGNLPYNISSPLLFHLM--TFADAVIDQHF-MLQNEVVERMVAEPGTKAFSRLSV---- 166
Query: 193 QICLAYRDMCEEM 205
L YR + E+M
Sbjct: 167 --MLQYRYVMEKM 177
>gi|307091876|gb|ADN28273.1| putative rRNA methyltransferase, partial [uncultured bacterium]
Length = 117
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
Query: 36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ 95
+ L IV G TG+ + E+GPG G++T L + ARL L+EKD R L +
Sbjct: 2 DKNLARWIVDQLGVQTGDHIVEIGPGLGALT-GWLAQYDARLTLVEKDGRMIQWLGQQFR 60
Query: 96 ASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ + FH+ D + F ++ ++ G +RIIGNLP+ VSTPLI K+ A+S
Sbjct: 61 SDRVEL-FHI-DALDFDLRTLY----------GRGPVRIIGNLPYYVSTPLIAKYTAALS 108
>gi|420152872|ref|ZP_14659883.1| dimethyladenosine transferase [Actinomyces massiliensis F0489]
gi|394763229|gb|EJF45351.1| dimethyladenosine transferase [Actinomyces massiliensis F0489]
Length = 334
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 16/148 (10%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
I+D+ + +R K L QNF+ + +IVR AG + G V E+GPG GS+T ++L
Sbjct: 43 IQDLAGVLGIRPTKTLGQNFVHDAGTLRRIVRRAGVLPGETVLEIGPGLGSLTLALLEAG 102
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHL---GDVMSFTMQNMFSEDRRRDW----S 126
AR++ +E DP+ LA+A P V + D + + S D +
Sbjct: 103 -ARVIAVEIDPQ-------LARALPVTVARRMPEAADGLRVVCADALSIDGPDALGLTPA 154
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAI 154
+ P IR++ NLP+NV+ P+++ + A+
Sbjct: 155 DAAP-IRLVANLPYNVAVPVLLTLLAAV 181
>gi|331002316|ref|ZP_08325834.1| dimethyladenosine transferase [Lachnospiraceae oral taxon 107 str.
F0167]
gi|330410132|gb|EGG89566.1| dimethyladenosine transferase [Lachnospiraceae oral taxon 107 str.
F0167]
Length = 292
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVC-EVGPGPGSITRSILNRRP 74
+IIK Y K+ QNFL + + DKI +G + GN++ E+GPG GS+T+ + N
Sbjct: 12 EIIKKYDFSFQKKFGQNFLIDTHVLDKICLASG-LGGNDLAIEIGPGIGSLTQYLANTAK 70
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
A +V IE D P L+ A+ + D + ++ + ED R+ + E IRI
Sbjct: 71 A-VVAIEIDKNLLPILNE-TLANYKNISIINADFLKIDLKKLI-EDCRQKYGE-FENIRI 126
Query: 135 IGNLPFNVSTPLIIKWIQA 153
+ NLP+ ++TP+I+ +++
Sbjct: 127 VANLPYYITTPIIMNVLES 145
>gi|374711291|ref|ZP_09715725.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Sporolactobacillus inulinus CASD]
Length = 291
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 13/148 (8%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
R+ ++D+I+ ++ K L QNFL + + + I +A + V E+GPG G++T
Sbjct: 4 RISSPKRMQDVIRKHQFTLKKSLGQNFLIDENILNNIATSASIDENSYVLEIGPGAGALT 63
Query: 67 RSILNRRPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
+ +L R +++ +E D R L D L +HF GDV+ + + ++
Sbjct: 64 Q-VLAGRAKKVIAVEIDRRLEAVLADTLQDFDNVSIHF--GDVLELDVAQILAQ------ 114
Query: 126 SEGLPG--IRIIGNLPFNVSTPLIIKWI 151
E PG + ++ NLP+ V+TP+++K +
Sbjct: 115 -ECPPGTSVTVVANLPYYVTTPILMKLL 141
>gi|328954956|ref|YP_004372289.1| dimethyladenosine transferase [Coriobacterium glomerans PW2]
gi|328455280|gb|AEB06474.1| dimethyladenosine transferase [Coriobacterium glomerans PW2]
Length = 313
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 12/150 (8%)
Query: 6 LRLPPMPS---IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGP 62
+R P+ S R+++ + L +L Q+FL + + ++IVR A V EVGPG
Sbjct: 1 MRCSPLASPTATRELLDEFGLTTKHRLGQHFLIDDHVVERIVRLAELDANARVVEVGPGI 60
Query: 63 GSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRR 122
G++T ++L R AR+V IE DP P L M P + + +GD + + + +E
Sbjct: 61 GTLTLALLP-RVARVVAIEMDPALEPVLAMHVADHP-DLSYIIGDALRVGFRAIAAE--- 115
Query: 123 RDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ 152
+ G P + ++ NLP+N + +I+ +++
Sbjct: 116 ---AGGAPTM-LVANLPYNAAATIILDYLE 141
>gi|406671663|ref|ZP_11078902.1| dimethyladenosine transferase [Facklamia hominis CCUG 36813]
gi|405580913|gb|EKB54972.1| dimethyladenosine transferase [Facklamia hominis CCUG 36813]
Length = 303
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 12/139 (8%)
Query: 17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPAR 76
I+K Y L+ K L QNFL EP++ +K+V A V E+GPG G++T+ L R R
Sbjct: 19 IMKKYGLKMKKSLGQNFLIEPQILNKMVDLADIDKNCTVIEIGPGIGALTQ-FLAMRAKR 77
Query: 77 LVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL--PGIRI 134
++ E D RF L S V F D ++ +++ D ++ +GL + +
Sbjct: 78 VIAFEIDQRFVEIL------SETLVDF---DNVTVIAEDILKVDFSKEAYKGLLEEPLMV 128
Query: 135 IGNLPFNVSTPLIIKWIQA 153
+ NLP+ ++TP+I+ +Q+
Sbjct: 129 VANLPYYITTPIIMHLLQS 147
>gi|418294118|ref|ZP_12906019.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379065502|gb|EHY78245.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 264
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + +I+R G + E+GPG G++T +L+ A L ++
Sbjct: 4 YQHRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLD-SGAHLDVV 62
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L A + H GD + F + E +RI+GNLP+
Sbjct: 63 ELDLDLIPILQG-KFAERDNFNLHQGDALKFDFSRLSVEPN---------SLRIVGNLPY 112
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 113 NISTPLIFHLL 123
>gi|15618967|ref|NP_225253.1| dimethyladenosine transferase [Chlamydophila pneumoniae CWL029]
gi|15836590|ref|NP_301114.1| dimethyladenosine transferase [Chlamydophila pneumoniae J138]
gi|16753057|ref|NP_445330.1| dimethyladenosine transferase [Chlamydophila pneumoniae AR39]
gi|27151618|sp|Q9Z6K0.1|RSMA_CHLPN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|4377394|gb|AAD19196.1| Dimethyladenosine Transferase [Chlamydophila pneumoniae CWL029]
gi|7189706|gb|AAF38590.1| dimethyladenosine transferase [Chlamydophila pneumoniae AR39]
gi|8979432|dbj|BAA99266.1| dimethyladenosine transferase [Chlamydophila pneumoniae J138]
Length = 277
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 14/123 (11%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K LSQNFL + + KIV + I + V E+GPG G++T ++ A+++ IEKDP F
Sbjct: 22 KSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAG-AQVIAIEKDPMF 80
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P L+ L P+ + D + + D+ +++ G R++ NLP++++TPL
Sbjct: 81 APSLEEL------PIRLEIIDACKYPL------DQLQEYKTLGKG-RVVANLPYHITTPL 127
Query: 147 IIK 149
+ K
Sbjct: 128 LTK 130
>gi|326804008|ref|YP_004321826.1| dimethyladenosine transferase [Aerococcus urinae ACS-120-V-Col10a]
gi|326650269|gb|AEA00452.1| dimethyladenosine transferase [Aerococcus urinae ACS-120-V-Col10a]
Length = 294
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPAR 76
I+ Y+L A K L QNFL EP++ +K+V A +V E+GPG G++T L R
Sbjct: 15 ILNRYQLDAKKSLGQNFLMEPQILEKMVDAADIDQDTDVIEIGPGIGALTE-FLCESAGR 73
Query: 77 LVLIEKDPRFTPCLDMLAQASPCPVHFHLG--DVMSFTMQNMFSEDRRRDWSEGLPG--- 131
++ E D R P L+ LG D ++ Q++ D S+ P
Sbjct: 74 VLAFEVDDRLLPVLEA-----------ELGHYDNLTVLHQDILEADLNASVSQYFPDSKR 122
Query: 132 IRIIGNLPFNVSTPLIIKWIQA 153
+ ++ NLP+ ++TP+I ++++
Sbjct: 123 LAVVANLPYYITTPIIFHFLES 144
>gi|307091938|gb|ADN28304.1| putative rRNA methyltransferase, partial [uncultured bacterium]
gi|307091976|gb|ADN28323.1| putative rRNA methyltransferase, partial [uncultured bacterium]
Length = 117
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
Query: 36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ 95
+ L IV G TG+ + E+GPG G++T L + ARL L+EKD R L +
Sbjct: 2 DKNLARWIVDQLGVQTGDHIVEIGPGLGALT-GWLAQYDARLTLVEKDGRMIQWLGQQFR 60
Query: 96 ASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ + FH+ D + F ++ ++ G +RIIGNLP+ VSTPLI K+ A+S
Sbjct: 61 SDRVEL-FHI-DALDFDLRTLY----------GRGPVRIIGNLPYYVSTPLIAKYTAALS 108
>gi|395651028|ref|ZP_10438878.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 270
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R+ + + E+GPG G++T+ +L A+L ++
Sbjct: 5 YQHRARKRFGQNFLHDAGVIDRILRSIHAKPEDRLLEIGPGQGALTQGLL-ASGAQLDVV 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L+ + H GD + F + + +R++GNLP+
Sbjct: 64 ELDKDLIPILNQQFGGKSNFI-LHQGDALKFDFNTLNAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 114 NISTPLIFHLL 124
>gi|317052466|ref|YP_004113582.1| dimethyladenosine transferase [Desulfurispirillum indicum S5]
gi|316947550|gb|ADU67026.1| dimethyladenosine transferase [Desulfurispirillum indicum S5]
Length = 270
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R I+ + L A K L QNF+ + +IV+ +G + V E+GPG G +TR +L R
Sbjct: 3 VRQILNTHGLMAKKSLGQNFICDESFVQRIVKQSGVGPDDTVLEIGPGLGVMTR-VLGER 61
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
AR++ +E D + LD L ++ P + L + ++ R DW R
Sbjct: 62 SARVIALEIDGQL---LDYLRSSAHLPENVTL----------VHTDALRYDWGTLPAECR 108
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
+I NLP+N+S+ +++ ++
Sbjct: 109 VIANLPYNISSQILMAIVE 127
>gi|431928742|ref|YP_007241776.1| dimethyladenosine transferase [Pseudomonas stutzeri RCH2]
gi|431827029|gb|AGA88146.1| dimethyladenosine transferase [Pseudomonas stutzeri RCH2]
Length = 264
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + +I+R G + E+GPG G++T +L+ A L ++
Sbjct: 4 YQHRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLD-SGAHLDVV 62
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L A H GD + F + +E +RI+GNLP+
Sbjct: 63 ELDLDLIPILQG-KFAERDNFTLHQGDALKFDFSRLSAEPN---------SLRIVGNLPY 112
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 113 NISTPLIFHLL 123
>gi|333396677|ref|ZP_08478492.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus coryniformis subsp. coryniformis KCTC
3167]
Length = 296
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R+I+ Y L K L QNFL EP + +I A T ++V E+GPG GS+T L +
Sbjct: 15 REILAAYGLTFKKSLGQNFLTEPTILRQIASAAELTTADDVLEIGPGIGSLTEQ-LAQNA 73
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++ +E D R P L D LA V DV+ + + R+ +G ++
Sbjct: 74 HQVLALEIDQRLLPILADTLAPYDNVTVLNQ--DVLKSDLATLI-----REHFDGQHKVK 126
Query: 134 IIGNLPFNVSTPLIIKWIQA 153
++ NLP+ ++TP++++ +++
Sbjct: 127 VVANLPYYITTPILLRLLES 146
>gi|172061667|ref|YP_001809319.1| dimethyladenosine transferase [Burkholderia ambifaria MC40-6]
gi|226729761|sp|B1YWD5.1|RSMA_BURA4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|171994184|gb|ACB65103.1| dimethyladenosine transferase [Burkholderia ambifaria MC40-6]
Length = 273
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 39/193 (20%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
A K+ QNFL + + D IV G G + E+GPG G++T ++ R P V
Sbjct: 12 ARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPESPLHAVE 71
Query: 80 IEKD------PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++D RF P L++ H GD ++F +++ + + P +R
Sbjct: 72 LDRDLIGRLQQRFGPLLEL-----------HAGDALAFDFRSLAAPGDK-------PSLR 113
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSVQEFG 192
I+GNLP+N+S+PL+ + + + +H L ++ER +P + + +LSV
Sbjct: 114 IVGNLPYNISSPLLFHLM--TFADAVIDQHF-MLQNEVVERMVAEPGTKAFSRLSV---- 166
Query: 193 QICLAYRDMCEEM 205
L YR + E+M
Sbjct: 167 --MLQYRYVMEKM 177
>gi|206559290|ref|YP_002230051.1| dimethyladenosine transferase [Burkholderia cenocepacia J2315]
gi|444358459|ref|ZP_21159861.1| dimethyladenosine transferase [Burkholderia cenocepacia BC7]
gi|444366464|ref|ZP_21166503.1| dimethyladenosine transferase [Burkholderia cenocepacia
K56-2Valvano]
gi|226729763|sp|B4EBE8.1|RSMA_BURCJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|198035328|emb|CAR51203.1| dimethyladenosine transferase [Burkholderia cenocepacia J2315]
gi|443604028|gb|ELT71996.1| dimethyladenosine transferase [Burkholderia cenocepacia BC7]
gi|443604563|gb|ELT72488.1| dimethyladenosine transferase [Burkholderia cenocepacia
K56-2Valvano]
Length = 275
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 33/190 (17%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
A K+ QNFL + + D IV G G + E+GPG G++T ++ R P V
Sbjct: 12 ARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIERLATPESPLHAVE 71
Query: 80 IEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
+++D + L Q + H GD ++F +++ + + P +RI+GNLP
Sbjct: 72 LDRD-----LIGRLQQRFGALLELHAGDALAFDFRSLAAPGDK-------PSLRIVGNLP 119
Query: 140 FNVSTPL---IIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSVQEFGQIC 195
+N+S+PL ++ + A+ + +++ ++ER +P + + +LSV
Sbjct: 120 YNISSPLLFHLMTFADAVVDQHFMLQNE------VVERMVAEPGTKAFSRLSV------M 167
Query: 196 LAYRDMCEEM 205
L YR + E+M
Sbjct: 168 LQYRYVMEKM 177
>gi|325569335|ref|ZP_08145491.1| dimethyladenosine transferase [Enterococcus casseliflavus ATCC
12755]
gi|325157335|gb|EGC69496.1| dimethyladenosine transferase [Enterococcus casseliflavus ATCC
12755]
Length = 295
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+ + K L QNFL EP + KIV AG V EVGPG G++T L ++
Sbjct: 14 KEILAKHGFTFKKSLGQNFLTEPNILRKIVETAGIDETTNVIEVGPGIGALTEQ-LAKQA 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
+++ E D R P L A + ++ + +Q S R ++S+ +++
Sbjct: 73 KQVLAFEIDDRLIPVL-----ADTMQPYANVKIIHQDVLQADLSTTIRSEFSDTAASLKV 127
Query: 135 IGNLPFNVSTPLIIKWIQA 153
+ NLP+ ++TP+++ ++++
Sbjct: 128 VANLPYYITTPIMMHFLES 146
>gi|423513025|ref|ZP_17489555.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HuA2-1]
gi|402446373|gb|EJV78233.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HuA2-1]
Length = 292
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI++ Y K L QNFL + + ++IV +A + + E+GPG G++T L +R
Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQ-LAKRA 69
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P LD LA S V DV+ + +FSE + EG +
Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYSNVTVINK--DVLKADVHEVFSE----QFEEG-QDVM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP++ K ++
Sbjct: 123 VVANLPYYITTPILFKLLE 141
>gi|317120934|ref|YP_004100937.1| dimethyladenosine transferase [Thermaerobacter marianensis DSM
12885]
gi|315590914|gb|ADU50210.1| dimethyladenosine transferase [Thermaerobacter marianensis DSM
12885]
Length = 310
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 6/140 (4%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R ++ Y +R ++L QNFL + ++IV + V EVGPG G++T ++ RR
Sbjct: 18 LRRWLEQYGVRPSRRLGQNFLVDDHWAERIVGAVEPGPDDVVLEVGPGLGALTERLV-RR 76
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHL--GDVMSFTMQNMFSEDRRRDWSEGLPG 131
R+V +E D R + L Q C +F L DV+ + ++ + + +P
Sbjct: 77 AGRVVAVEVDRRLA---EALRQRLACVDNFQLVVADVLQVDLADLVARHLAPVGGDDMPA 133
Query: 132 IRIIGNLPFNVSTPLIIKWI 151
+++ NLP+ +++P +++W+
Sbjct: 134 VKLASNLPYAITSPFLVRWL 153
>gi|423388189|ref|ZP_17365415.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG1X1-3]
gi|423416565|ref|ZP_17393654.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG3X2-1]
gi|401110219|gb|EJQ18130.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG3X2-1]
gi|401644379|gb|EJS62071.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG1X1-3]
Length = 292
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI++ Y K L QNFL + + ++IV +A + + E+GPG G++T L +R
Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQ-LAKRA 69
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P LD LA S V DV+ + +FSE + EG +
Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYSNVTVINK--DVLKADVHEVFSE----QFEEG-QDVM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP++ K ++
Sbjct: 123 VVANLPYYITTPILFKLLE 141
>gi|419955704|ref|ZP_14471828.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas stutzeri TS44]
gi|387967509|gb|EIK51810.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas stutzeri TS44]
Length = 262
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 11/133 (8%)
Query: 20 LYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVL 79
+++ RA K+ QNFL + + +I+R G + E+GPG G++T +L+ A L +
Sbjct: 1 MHQHRARKRFGQNFLHDAGVIHRILRAIHPKAGERLVEIGPGQGALTEGLLD-SGAHLDV 59
Query: 80 IEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
+E D P L A H GD + F + E +RI+GNLP
Sbjct: 60 VELDLDLIPILQS-KFAGRDNFTLHQGDALKFDFSRLSQEP---------ASLRIVGNLP 109
Query: 140 FNVSTPLIIKWIQ 152
+N+STPLI ++
Sbjct: 110 YNISTPLIFHLLE 122
>gi|407707992|ref|YP_006831577.1| yitT family protein [Bacillus thuringiensis MC28]
gi|407385677|gb|AFU16178.1| dimethyladenosine transferase [Bacillus thuringiensis MC28]
Length = 292
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI++ Y K L QNFL + + ++IV +A + + E+GPG G++T L +R
Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQ-LAKRA 69
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P LD LA S V DV+ + +FSE + EG +
Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYSNVTVINK--DVLKADVHEVFSE----QFEEG-QDVM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP++ K ++
Sbjct: 123 VVANLPYYITTPILFKLLE 141
>gi|163938049|ref|YP_001642933.1| dimethyladenosine transferase [Bacillus weihenstephanensis KBAB4]
gi|423370770|ref|ZP_17348174.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD142]
gi|423456672|ref|ZP_17433522.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG5X1-1]
gi|423471689|ref|ZP_17448433.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG6O-2]
gi|423490656|ref|ZP_17467338.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BtB2-4]
gi|423496396|ref|ZP_17473040.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
CER057]
gi|423496810|ref|ZP_17473427.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
CER074]
gi|423520181|ref|ZP_17496662.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HuA2-4]
gi|423520654|ref|ZP_17497127.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HuA4-10]
gi|423556962|ref|ZP_17533265.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
MC67]
gi|423595318|ref|ZP_17571348.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD048]
gi|423597235|ref|ZP_17573235.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD078]
gi|423659640|ref|ZP_17634809.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VDM022]
gi|423671072|ref|ZP_17646101.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VDM034]
gi|423672705|ref|ZP_17647644.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VDM062]
gi|226729756|sp|A9VN54.1|RSMA_BACWK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|163860246|gb|ABY41305.1| dimethyladenosine transferase [Bacillus weihenstephanensis KBAB4]
gi|401073357|gb|EJP81782.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD142]
gi|401128419|gb|EJQ36109.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG5X1-1]
gi|401149126|gb|EJQ56605.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
CER057]
gi|401155446|gb|EJQ62856.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HuA2-4]
gi|401163991|gb|EJQ71331.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
CER074]
gi|401180550|gb|EJQ87708.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HuA4-10]
gi|401194041|gb|EJR01038.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
MC67]
gi|401222244|gb|EJR28841.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD048]
gi|401239576|gb|EJR46001.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD078]
gi|401293903|gb|EJR99536.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VDM034]
gi|401304659|gb|EJS10209.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VDM022]
gi|401311437|gb|EJS16738.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VDM062]
gi|402429001|gb|EJV61092.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BtB2-4]
gi|402430787|gb|EJV62861.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG6O-2]
Length = 292
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI++ Y K L QNFL + + ++IV +A + + E+GPG G++T L +R
Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQ-LAKRA 69
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P LD LA S V DV+ + +FSE + EG +
Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYSNVTVINK--DVLKADVHEVFSE----QFEEG-QDVM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP++ K ++
Sbjct: 123 VVANLPYYITTPILFKLLE 141
>gi|423376684|ref|ZP_17353968.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG1O-2]
gi|423548754|ref|ZP_17525112.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HuB5-5]
gi|423621439|ref|ZP_17597217.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD148]
gi|401174285|gb|EJQ81496.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HuB5-5]
gi|401263468|gb|EJR69593.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD148]
gi|401641323|gb|EJS59043.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG1O-2]
Length = 292
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI++ Y K L QNFL + + ++IV +A + + E+GPG G++T L +R
Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQ-LAKRA 69
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P LD LA S V DV+ + +FSE + EG +
Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYSNVTVINK--DVLKADVHEVFSE----QFEEG-QDVM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP++ K ++
Sbjct: 123 VVANLPYYITTPILFKLLE 141
>gi|423399639|ref|ZP_17376812.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG2X1-2]
gi|423461696|ref|ZP_17438492.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG5X2-1]
gi|423480183|ref|ZP_17456895.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG6X1-1]
gi|401135358|gb|EJQ42957.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG5X2-1]
gi|401658245|gb|EJS75742.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG2X1-2]
gi|402423686|gb|EJV55892.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG6X1-1]
Length = 292
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI++ Y K L QNFL + + ++IV +A + + E+GPG G++T L +R
Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQ-LAKRA 69
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P LD LA S V DV+ + +FSE + EG +
Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYSNVTVINK--DVLKADVHEVFSE----QFEEG-QDVM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP++ K ++
Sbjct: 123 VVANLPYYITTPILFKLLE 141
>gi|402565536|ref|YP_006614881.1| dimethyladenosine transferase [Burkholderia cepacia GG4]
gi|402246733|gb|AFQ47187.1| dimethyladenosine transferase [Burkholderia cepacia GG4]
Length = 276
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 27/187 (14%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
A K+ QNFL + + D IV G G + E+GPG G++T ++ R P V
Sbjct: 12 ARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIARLATPESPLHAVE 71
Query: 80 IEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
+++D + L Q + H GD ++F +++ + + P +RI+GNLP
Sbjct: 72 LDRD-----LIGRLQQRFGALLELHAGDALAFDFRSLAAPGDK-------PSLRIVGNLP 119
Query: 140 FNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSVQEFGQICLAY 198
+N+S+PL+ + + + +H L ++ER +P + + +LSV L Y
Sbjct: 120 YNISSPLLFHLM--TFADAVIDQHF-MLQNEVVERMVAEPGTKAFSRLSV------MLQY 170
Query: 199 RDMCEEM 205
R + E+M
Sbjct: 171 RYVMEKM 177
>gi|94986964|ref|YP_594897.1| dimethyladenosine transferase [Lawsonia intracellularis PHE/MN1-00]
gi|442555795|ref|YP_007365620.1| dimethyladenosine transferase [Lawsonia intracellularis N343]
gi|118600874|sp|Q1MR01.1|RSMA_LAWIP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|94731213|emb|CAJ54575.1| rRNA (adenine-N6,N6)-dimethyltransferase [Lawsonia intracellularis
PHE/MN1-00]
gi|441493242|gb|AGC49936.1| dimethyladenosine transferase [Lawsonia intracellularis N343]
Length = 271
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 24/178 (13%)
Query: 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
R K L Q+FL + + +IV+ G + E+GPG G++TR I P +L+L+EK
Sbjct: 5 FRPKKSLGQHFLKDTAIAYRIVKLLDIHEGENIFEIGPGQGALTRHIYGYNPGQLLLVEK 64
Query: 83 DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
D + + Q + V H D + F+ W ++I NLP+NV
Sbjct: 65 DSCWVDYHSSVKQQNVSKVTIHHLDALKFS------------WETLCGSWKVISNLPYNV 112
Query: 143 STPL---IIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQEFGQI 194
+ L I+ +Q++S + + + + +R C P + Y + VQ F ++
Sbjct: 113 GSALIWDIVSRVQSMSRAVFMVQKE------VADRLCACPGTKSYGVLSVWVQSFAKV 164
>gi|339243091|ref|XP_003377471.1| putative C2 domain protein [Trichinella spiralis]
gi|316973725|gb|EFV57284.1| putative C2 domain protein [Trichinella spiralis]
Length = 1392
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 46/64 (71%)
Query: 92 MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWI 151
++A++S + +GDVM + ++ F D +R+WSE P + +IGNLPFNVST LIIKW+
Sbjct: 1132 LIAESSGGIMDIRIGDVMKYEIETEFPADVKREWSEEPPPVHVIGNLPFNVSTYLIIKWL 1191
Query: 152 QAIS 155
+A+S
Sbjct: 1192 RAMS 1195
>gi|329942659|ref|ZP_08291438.1| dimethyladenosine transferase [Chlamydophila psittaci Cal10]
gi|332287254|ref|YP_004422155.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
gi|384450406|ref|YP_005663006.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
gi|384451407|ref|YP_005664005.1| dimethyladenosine transferase [Chlamydophila psittaci 01DC11]
gi|384452381|ref|YP_005664978.1| dimethyladenosine transferase [Chlamydophila psittaci 08DC60]
gi|384453356|ref|YP_005665952.1| dimethyladenosine transferase [Chlamydophila psittaci C19/98]
gi|384454335|ref|YP_005666930.1| dimethyladenosine transferase [Chlamydophila psittaci 02DC15]
gi|392376497|ref|YP_004064275.1| dimethyladenosine transferase [Chlamydophila psittaci RD1]
gi|407453815|ref|YP_006732923.1| dimethyladenosine transferase [Chlamydia psittaci 84/55]
gi|254574590|gb|ACT68006.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
gi|313847840|emb|CBY16834.1| dimethyladenosine transferase [Chlamydophila psittaci RD1]
gi|325506928|gb|ADZ18566.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
gi|328814919|gb|EGF84908.1| dimethyladenosine transferase [Chlamydophila psittaci Cal10]
gi|328914500|gb|AEB55333.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
gi|334692137|gb|AEG85356.1| dimethyladenosine transferase [Chlamydophila psittaci C19/98]
gi|334693117|gb|AEG86335.1| dimethyladenosine transferase [Chlamydophila psittaci 01DC11]
gi|334694092|gb|AEG87309.1| dimethyladenosine transferase [Chlamydophila psittaci 02DC15]
gi|334695070|gb|AEG88286.1| dimethyladenosine transferase [Chlamydophila psittaci 08DC60]
gi|405780574|gb|AFS19324.1| dimethyladenosine transferase [Chlamydia psittaci 84/55]
Length = 278
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 16/124 (12%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K LSQNFL + + KI+ + G+ V E+GPG G++T ++N + A +V +EKDP F
Sbjct: 22 KGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVN-QGAHVVALEKDPMF 80
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEGLPGIRIIGNLPFNVSTP 145
L L P+H + D + + S+ + + W +G R++ NLP++V+TP
Sbjct: 81 EETLKQL------PIHLEITDACKYPL----SQLQDKGWQGKG----RVVANLPYHVTTP 126
Query: 146 LIIK 149
L+ K
Sbjct: 127 LLTK 130
>gi|409395477|ref|ZP_11246547.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. Chol1]
gi|409395572|ref|ZP_11246637.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. Chol1]
gi|409119838|gb|EKM96211.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. Chol1]
gi|409119859|gb|EKM96231.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. Chol1]
Length = 264
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + +I+R G + E+GPG G++T +L+ A L ++
Sbjct: 4 YQHRARKRFGQNFLHDAGVIHRILRAIHPKAGERLVEIGPGQGALTEGLLD-SGAHLDVV 62
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IRIIGNLP 139
E D P L A H GD + F W P +RI+GNLP
Sbjct: 63 ELDLDLIPILQS-KFAGRENFTLHQGDALKFDFA----------WLSQEPASLRIVGNLP 111
Query: 140 FNVSTPLIIKWIQ 152
+N+STPLI ++
Sbjct: 112 YNISTPLIFHLLE 124
>gi|406592147|ref|YP_006739327.1| dimethyladenosine transferase [Chlamydia psittaci CP3]
gi|407455135|ref|YP_006734026.1| dimethyladenosine transferase [Chlamydia psittaci GR9]
gi|407456511|ref|YP_006735084.1| dimethyladenosine transferase [Chlamydia psittaci VS225]
gi|407457867|ref|YP_006736172.1| dimethyladenosine transferase [Chlamydia psittaci WS/RT/E30]
gi|407460487|ref|YP_006738262.1| dimethyladenosine transferase [Chlamydia psittaci WC]
gi|410858279|ref|YP_006974219.1| dimethyladenosine transferase [Chlamydia psittaci 01DC12]
gi|449070955|ref|YP_007438035.1| dimethyladenosine transferase [Chlamydophila psittaci Mat116]
gi|405781678|gb|AFS20427.1| dimethyladenosine transferase [Chlamydia psittaci GR9]
gi|405783772|gb|AFS22519.1| dimethyladenosine transferase [Chlamydia psittaci VS225]
gi|405785543|gb|AFS24289.1| dimethyladenosine transferase [Chlamydia psittaci WS/RT/E30]
gi|405786660|gb|AFS25404.1| dimethyladenosine transferase [Chlamydia psittaci WC]
gi|405788019|gb|AFS26762.1| dimethyladenosine transferase [Chlamydia psittaci CP3]
gi|410811174|emb|CCO01819.1| dimethyladenosine transferase [Chlamydia psittaci 01DC12]
gi|449039463|gb|AGE74887.1| dimethyladenosine transferase [Chlamydophila psittaci Mat116]
Length = 278
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 16/124 (12%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K LSQNFL + + KI+ + G+ V E+GPG G++T ++N + A +V +EKDP F
Sbjct: 22 KGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVN-QGAHVVALEKDPMF 80
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEGLPGIRIIGNLPFNVSTP 145
L L P+H + D + + S+ + + W +G R++ NLP++V+TP
Sbjct: 81 EETLKQL------PIHLEITDACKYPL----SQLQDKGWQGKG----RVVANLPYHVTTP 126
Query: 146 LIIK 149
L+ K
Sbjct: 127 LLTK 130
>gi|312898803|ref|ZP_07758191.1| dimethyladenosine transferase [Megasphaera micronuciformis F0359]
gi|310619965|gb|EFQ03537.1| dimethyladenosine transferase [Megasphaera micronuciformis F0359]
Length = 285
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R I+K + LR K+ QNFL P + I A G+EV E+GPG G++T+++ +
Sbjct: 13 VRYIVKRFNLRMSKKWGQNFLIRPDVVKNIAIAADIGEGDEVLEIGPGIGTLTQALAETK 72
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A + +E D R P LD + H GD++ + +E R ++
Sbjct: 73 -ASVTAVEIDDRLLPILDKTLEDYENVRIIH-GDILKIDINKEMNE---RSFT------- 120
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQE 190
+ NLP+ ++TP+I++ ++ E L K + + ER KP R Y ++VQ
Sbjct: 121 VCANLPYYITTPIIMRLLE---ERLPIRKMVVMVQKEVAERMTAKPGSRIYGALSVAVQY 177
Query: 191 FGQ 193
+ +
Sbjct: 178 YTK 180
>gi|333902123|ref|YP_004475996.1| ribosomal RNA small subunit methyltransferase A [Pseudomonas fulva
12-X]
gi|333117388|gb|AEF23902.1| Ribosomal RNA small subunit methyltransferase A [Pseudomonas fulva
12-X]
Length = 270
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + +I+R G + E+GPG G++T +LN A+L +I
Sbjct: 5 YQHRARKRFGQNFLHDAGVIHRILRAIHAREGEHLLEIGPGQGALTEGLLN-SGAQLDVI 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L P + GD + F ++ + +R++GNLP+
Sbjct: 64 ELDLDLIPILQAKFADQPR-FRLNQGDALKFDFSSLQAAPN---------SLRVVGNLPY 113
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 114 NISTPLIFHLL 124
>gi|257066995|ref|YP_003153251.1| dimethyladenosine transferase [Anaerococcus prevotii DSM 20548]
gi|256798875|gb|ACV29530.1| dimethyladenosine transferase [Anaerococcus prevotii DSM 20548]
Length = 280
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
++DII LY R K L QNFL + +KIV +A + + V E+GPG G+IT + +
Sbjct: 10 VKDIIDLYNFRFSKSLGQNFLIDKNFVEKIV-DAADVDSSNVLEIGPGIGTITYE-MAKT 67
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-- 131
++V IE D P + + D +++ D R E G
Sbjct: 68 AKKVVAIEIDSSLIPII---------GENMEEFDNFKLIHEDILKADLGRIIEEEFAGED 118
Query: 132 IRIIGNLPFNVSTPLIIKWIQA 153
+++ NLP+ ++TP+I K I+
Sbjct: 119 FKVVSNLPYYITTPIIEKLIET 140
>gi|167585502|ref|ZP_02377890.1| dimethyladenosine transferase [Burkholderia ubonensis Bu]
Length = 275
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 39/193 (20%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
A K+ QNFL + + D IV G G + E+GPG G++T ++ R P V
Sbjct: 12 ARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTEPLIARLATPESPLHAVE 71
Query: 80 IEKD------PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++D RF P L++ H GD ++F +++ + + P +R
Sbjct: 72 LDRDLIVRLQQRFGPLLEL-----------HAGDALAFDFRSLAAAGDK-------PSLR 113
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSVQEFG 192
I+GNLP+N+S+PL+ + +++ +H L ++ER +P + + +LSV
Sbjct: 114 IVGNLPYNISSPLLFHLM--TFADVVVDQHF-MLQNEVVERMVAEPGTKAFSRLSV---- 166
Query: 193 QICLAYRDMCEEM 205
L YR + ++M
Sbjct: 167 --MLQYRYVMDKM 177
>gi|423439778|ref|ZP_17416684.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG4X2-1]
gi|423450061|ref|ZP_17426940.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG5O-1]
gi|423462850|ref|ZP_17439618.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG6O-1]
gi|423532206|ref|ZP_17508624.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HuB2-9]
gi|423542523|ref|ZP_17518913.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HuB4-10]
gi|401127068|gb|EJQ34798.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG5O-1]
gi|401168319|gb|EJQ75584.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HuB4-10]
gi|402421821|gb|EJV54068.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG4X2-1]
gi|402422978|gb|EJV55199.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG6O-1]
gi|402465284|gb|EJV96966.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HuB2-9]
Length = 292
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI++ Y K L QNFL + + ++IV +A + + E+GPG G++T L +R
Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQ-LAKRA 69
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P LD LA S V DV+ + +FSE + EG +
Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYSNVTVINK--DVLKADVHEVFSE----QFEEG-QDVM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP++ K ++
Sbjct: 123 VVANLPYYITTPILFKLLE 141
>gi|423618776|ref|ZP_17594609.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD115]
gi|401252618|gb|EJR58874.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD115]
Length = 292
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI++ Y K L QNFL + + ++IV +A + + E+GPG G++T L +R
Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQ-LAKRA 69
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P LD LA S V DV+ + +FSE + EG +
Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYSNVTVINK--DVLKADVHEVFSE----QFEEG-QDVM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP++ K ++
Sbjct: 123 VVANLPYYITTPILFKLLE 141
>gi|420262740|ref|ZP_14765381.1| dimethyladenosine transferase [Enterococcus sp. C1]
gi|394770497|gb|EJF50301.1| dimethyladenosine transferase [Enterococcus sp. C1]
Length = 295
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+ + K L QNFL EP + KIV AG V EVGPG G++T L +
Sbjct: 14 KEILAKHGFTFKKSLGQNFLTEPNILRKIVETAGIDETTNVIEVGPGIGALTEQ-LAKHA 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
+++ E D R P L A + ++ + +Q S R ++S+ +++
Sbjct: 73 KQVLAFEIDDRLIPVL-----ADTMQPYANVKIIHQDVLQADLSTTIRSEFSDTAASLKV 127
Query: 135 IGNLPFNVSTPLIIKWIQA 153
+ NLP+ ++TP+++ ++++
Sbjct: 128 VANLPYYITTPIMMHFLES 146
>gi|282883264|ref|ZP_06291862.1| dimethyladenosine transferase [Peptoniphilus lacrimalis 315-B]
gi|281296894|gb|EFA89392.1| dimethyladenosine transferase [Peptoniphilus lacrimalis 315-B]
Length = 288
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 24/208 (11%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RL + +I+K Y R K L QNFL + + KIV +A + V E+GPG G++T
Sbjct: 3 RLFKPKRVSEILKKYNFRFSKTLGQNFLIDGNIVRKIVDSAEVSEADNVLEIGPGIGTLT 62
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDW 125
L R ++V IE D R D+L + P V D + ++ + E+ +
Sbjct: 63 EE-LALRAKKVVSIEIDKRLE---DLLEETLPYDNVKIIYKDFLKLDLKTLIDEEFKG-- 116
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQ 185
+++ NLP+ ++TP+I E LL +++ ++++ K Q
Sbjct: 117 ----QNFKVVANLPYYITTPII--------EKLLLNSENIEIINVMIQKEVAKRF--TAQ 162
Query: 186 LSVQEFGQICLAYRDMCEEMPGLYEYTL 213
+++G + + + C YE+T+
Sbjct: 163 PQTKDYGSLSVFIQFFCR---AFYEFTV 187
>gi|254247259|ref|ZP_04940580.1| Dimethyladenosine transferase [Burkholderia cenocepacia PC184]
gi|124872035|gb|EAY63751.1| Dimethyladenosine transferase [Burkholderia cenocepacia PC184]
Length = 275
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 27/187 (14%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
A K+ QNFL + + D IV G G + E+GPG G++T ++ R P V
Sbjct: 12 ARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTGPLIERLATPESPLHAVE 71
Query: 80 IEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
+++D + L Q + H GD ++F +++ + + P +RI+GNLP
Sbjct: 72 LDRD-----LIGRLQQRFGALLELHAGDALAFDFRSLAAPGDK-------PSLRIVGNLP 119
Query: 140 FNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSVQEFGQICLAY 198
+N+S+PL+ + + + +H L ++ER +P + + +LSV L Y
Sbjct: 120 YNISSPLLFHLM--TFADAVIDQHF-MLQNEVVERMVAEPGTKAFSRLSV------MLQY 170
Query: 199 RDMCEEM 205
R + E+M
Sbjct: 171 RYVMEKM 177
>gi|15896238|ref|NP_349587.1| dimethyladenosine transferase [Clostridium acetobutylicum ATCC 824]
gi|337738193|ref|YP_004637640.1| dimethyladenosine transferase [Clostridium acetobutylicum DSM 1731]
gi|27151592|sp|Q97EX0.1|RSMA_CLOAB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|15026041|gb|AAK80927.1|AE007795_6 Dimethyladenosine transferase [Clostridium acetobutylicum ATCC 824]
gi|336292364|gb|AEI33498.1| dimethyladenosine transferase [Clostridium acetobutylicum DSM 1731]
Length = 276
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 25/193 (12%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
+ R I++ Y R K+L QNFL + + D IV NA + + E+GPG G++TR +L
Sbjct: 5 NTRQIVEKYNFRFSKRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRLL-E 63
Query: 73 RPARLVLIEKDPRFTPCL--DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ ++ IE D P + +M + +H D + N+ E++
Sbjct: 64 KAKKVCAIELDESLIPIITNEMKEYDNFTLIH---NDALKVDFNNIIGEEQ--------- 111
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQE 190
++++ NLP+ V+TP+I K ++E F + + +R KP S ++
Sbjct: 112 SVKLVANLPYYVTTPIISKL---LNEGYNFKSLTIMIQKEVGDRIAAKP-------STKD 161
Query: 191 FGQICLAYRDMCE 203
+G + L + C+
Sbjct: 162 YGALTLLVQYYCD 174
>gi|107023643|ref|YP_621970.1| dimethyladenosine transferase [Burkholderia cenocepacia AU 1054]
gi|116690728|ref|YP_836351.1| dimethyladenosine transferase [Burkholderia cenocepacia HI2424]
gi|170734070|ref|YP_001766017.1| dimethyladenosine transferase [Burkholderia cenocepacia MC0-3]
gi|122064286|sp|Q1BTQ8.1|RSMA_BURCA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|166221651|sp|A0KAD1.1|RSMA_BURCH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226729762|sp|B1JY71.1|RSMA_BURCC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|105893832|gb|ABF76997.1| dimethyladenosine transferase [Burkholderia cenocepacia AU 1054]
gi|116648817|gb|ABK09458.1| dimethyladenosine transferase [Burkholderia cenocepacia HI2424]
gi|169817312|gb|ACA91895.1| dimethyladenosine transferase [Burkholderia cenocepacia MC0-3]
Length = 275
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 27/187 (14%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
A K+ QNFL + + D IV G G + E+GPG G++T ++ R P V
Sbjct: 12 ARKRFGQNFLVDHGVIDSIVATIGPARGQRMVEIGPGLGALTGPLIERLATPESPLHAVE 71
Query: 80 IEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
+++D + L Q + H GD ++F +++ + + P +RI+GNLP
Sbjct: 72 LDRD-----LIGRLQQRFGALLELHAGDALAFDFRSLAAPGDK-------PSLRIVGNLP 119
Query: 140 FNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSVQEFGQICLAY 198
+N+S+PL+ + + + +H L ++ER +P + + +LSV L Y
Sbjct: 120 YNISSPLLFHLM--TFADAVIDQHF-MLQNEVVERMVAEPGTKAFSRLSV------MLQY 170
Query: 199 RDMCEEM 205
R + E+M
Sbjct: 171 RYVMEKM 177
>gi|353327896|ref|ZP_08970223.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Wolbachia endosymbiont wVitB of Nasonia vitripennis]
Length = 264
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 11/137 (8%)
Query: 18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARL 77
+K + L+ K L QNF+ + +IV AG++ V E+GPG G++TR IL P L
Sbjct: 1 MKKFSLKPKKSLGQNFILSNEIIKRIVALAGSLKDFNVIEIGPGYGALTREILAYNPKFL 60
Query: 78 VLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN 137
+ IEKD + L D ++ + + +++I N
Sbjct: 61 LSIEKDSSLVKHHEQLLNEHQGKYRIIEADALNVVEKELVE-----------CPVKVIAN 109
Query: 138 LPFNVSTPLIIKWIQAI 154
LP+N+S L +KW+ I
Sbjct: 110 LPYNISVALFLKWLNNI 126
>gi|384459704|ref|YP_005672124.1| dimethyladenosine transferase [Clostridium acetobutylicum EA 2018]
gi|325510393|gb|ADZ22029.1| dimethyladenosine transferase [Clostridium acetobutylicum EA 2018]
Length = 287
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 25/193 (12%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
+ R I++ Y R K+L QNFL + + D IV NA + + E+GPG G++TR +L
Sbjct: 16 NTRQIVEKYNFRFSKRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRLL-E 74
Query: 73 RPARLVLIEKDPRFTPCL--DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ ++ IE D P + +M + +H D + N+ E++
Sbjct: 75 KAKKVCAIELDESLIPIITNEMKEYDNFTLIH---NDALKVDFNNIIGEEQ--------- 122
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQE 190
++++ NLP+ V+TP+I K ++E F + + +R KP S ++
Sbjct: 123 SVKLVANLPYYVTTPIISKL---LNEGYNFKSLTIMIQKEVGDRIAAKP-------STKD 172
Query: 191 FGQICLAYRDMCE 203
+G + L + C+
Sbjct: 173 YGALTLLVQYYCD 185
>gi|302669432|ref|YP_003829392.1| dimethyladenosine transferase KsgA [Butyrivibrio proteoclasticus
B316]
gi|302393905|gb|ADL32810.1| dimethyladenosine transferase KsgA [Butyrivibrio proteoclasticus
B316]
Length = 292
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 10/140 (7%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++++ + + A K+ QNFL + + D IV AG + V E+GPG GS+T+ L
Sbjct: 11 KEVLAKFGMSAKKKFGQNFLIDSGVLDGIVSAAGVTKDDCVLEIGPGIGSLTQ-YLAESA 69
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V +E D P L D L++ V DV+ ++ + E ++ G P I+
Sbjct: 70 GKVVAVEIDKTLIPVLADTLSEYDNVTVINE--DVLKVDIEAIVKE-----YNGGNP-IK 121
Query: 134 IIGNLPFNVSTPLIIKWIQA 153
++ NLP+ ++TP+I+K ++
Sbjct: 122 VVANLPYYITTPIIMKLFES 141
>gi|291521141|emb|CBK79434.1| dimethyladenosine transferase [Coprococcus catus GD/7]
Length = 287
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 10/138 (7%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
++IK Y+ K+ QNFL + + DKI+ AG + V E+GPG G++T+ L
Sbjct: 12 EVIKKYEFCFQKKFGQNFLIDGHVLDKIIAGAGVTKDDMVLEIGPGIGTMTQ-YLAEAAG 70
Query: 76 RLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
++V +E D P L + LA V H DV+S ++ + E+ + G P I++
Sbjct: 71 KVVAVEIDRNLLPILQETLADYDNVKV-IH-ADVLSLDLEKLVQEE-----NGGRP-IKV 122
Query: 135 IGNLPFNVSTPLIIKWIQ 152
+ NLP+ ++TP+I+ +
Sbjct: 123 VANLPYYITTPIIMALFE 140
>gi|385267068|ref|ZP_10045155.1| dimethyladenosine transferase [Bacillus sp. 5B6]
gi|385151564|gb|EIF15501.1| dimethyladenosine transferase [Bacillus sp. 5B6]
Length = 293
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + D+IV +A V E+GPG G++T L +R
Sbjct: 13 KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGIGALTEQ-LAKRA 71
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ + DV+ ++++ E++ +D E I
Sbjct: 72 KKVVAFEIDQRLLPILNDTLSPYDNVTIIHQ--DVLKADVKSVI-EEQFQDCDE----IM 124
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
+ NLP+ V+TP+I+K ++ E+L L + ER P S +E+G
Sbjct: 125 VTANLPYYVTTPIIMKLLE---EHLPLKGIVVMLQKEVAERMAADP-------SSKEYGS 174
Query: 194 ICLAYRDMCE 203
+ +A + E
Sbjct: 175 LSIAVQFYTE 184
>gi|440539544|emb|CCP65058.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L1/224]
Length = 277
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 16/129 (12%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K LSQNFL + + KI+ A G+ V E+GPG G+++ +L+ + A ++ +EKD
Sbjct: 19 RAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLS-QGANVIALEKD 77
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI-RIIGNLPFNV 142
P F L L P+ + D + + ++ ED+ G G RI+ NLP+++
Sbjct: 78 PMFEESLSQL------PMDIEIADACKYPLTSL--EDK------GWKGKGRIVANLPYHI 123
Query: 143 STPLIIKWI 151
+TPL+ K+
Sbjct: 124 TTPLLTKFF 132
>gi|339492698|ref|YP_004712991.1| dimethyladenosine transferase [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|338800070|gb|AEJ03902.1| dimethyladenosine transferase [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
Length = 264
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + +I+R G + E+GPG G++T +L+ A+L ++
Sbjct: 4 YQHRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLD-SGAQLDVV 62
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L A + + GD + F + E +RI+GNLP+
Sbjct: 63 ELDLDLIPILQA-KFAGRENFNLNQGDALKFDFSRLSQEP---------ASLRIVGNLPY 112
Query: 141 NVSTPLIIKWIQ 152
N+STPLI ++
Sbjct: 113 NISTPLIFHLLE 124
>gi|146281120|ref|YP_001171273.1| dimethyladenosine transferase [Pseudomonas stutzeri A1501]
gi|145569325|gb|ABP78431.1| dimethyladenosine transferase [Pseudomonas stutzeri A1501]
Length = 264
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + +I+R G + E+GPG G++T +L+ A+L ++
Sbjct: 4 YQHRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLH-SGAQLDVV 62
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L A + + GD + F + E +RI+GNLP+
Sbjct: 63 ELDLDLIPILQA-KFAGRENFNLNQGDALKFDFSRLSQEP---------ASLRIVGNLPY 112
Query: 141 NVSTPLIIKWIQ 152
N+STPLI ++
Sbjct: 113 NISTPLIFHLLE 124
>gi|62258206|gb|AAX77774.1| unknown protein [synthetic construct]
Length = 297
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
YK +A K L QNFL + + KIV+ A + V E+GPG G++TR +L+ + ++
Sbjct: 29 YKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLLS-SSNNVSVV 87
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D L Q P H + D + F + ++ + ++ I++IGNLP+
Sbjct: 88 EFDASVIDTLIANCQKYGTP-HIYNQDFLKFDISSLENSSNQK--------IKLIGNLPY 138
Query: 141 NVSTPLIIKWIQ 152
N+S+P++ K I+
Sbjct: 139 NISSPILFKVIK 150
>gi|295100315|emb|CBK97860.1| dimethyladenosine transferase [Faecalibacterium prausnitzii L2-6]
Length = 283
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 12/140 (8%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
IR + + Y K QNF+ P L KIV +G V E+GPG G +T+ L RR
Sbjct: 10 IRTLCEKYNFALSKGFGQNFIINPGLPPKIVDASGVDKSWGVLEIGPGIGVLTKE-LARR 68
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-- 131
A++V IE D R P +LA+ +F L +Q++ D R E PG
Sbjct: 69 AAKVVSIEVDERLPP---LLAETMAGVENFKL------VLQDVLKADLRALIEEEFPGMP 119
Query: 132 IRIIGNLPFNVSTPLIIKWI 151
+ + NLP+ +++P+++K +
Sbjct: 120 VAVCANLPYYITSPIVMKLL 139
>gi|154684561|ref|YP_001419722.1| dimethyladenosine transferase [Bacillus amyloliquefaciens FZB42]
gi|375360733|ref|YP_005128772.1| dimethyladenosine transferase [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384263673|ref|YP_005419380.1| dimethyladenosine transferase KsgA [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387896568|ref|YP_006326864.1| dimethyladenosine transferase [Bacillus amyloliquefaciens Y2]
gi|394994176|ref|ZP_10386904.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sp. 916]
gi|421729462|ref|ZP_16168594.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451348568|ref|YP_007447199.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens IT-45]
gi|154350412|gb|ABS72491.1| KsgA [Bacillus amyloliquefaciens FZB42]
gi|371566727|emb|CCF03577.1| dimethyladenosine transferase [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380497026|emb|CCG48064.1| dimethyladenosine transferase KsgA [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387170678|gb|AFJ60139.1| dimethyladenosine transferase [Bacillus amyloliquefaciens Y2]
gi|393804952|gb|EJD66343.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sp. 916]
gi|407076706|gb|EKE49687.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449852326|gb|AGF29318.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens IT-45]
Length = 293
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + D+IV +A V E+GPG G++T L +R
Sbjct: 13 KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGIGALTEQ-LAKRA 71
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ + DV+ ++++ E++ +D E I
Sbjct: 72 KKVVAFEIDQRLLPILNDTLSPYDNVTIIHQ--DVLKADVKSVI-EEQFQDCDE----IM 124
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
+ NLP+ V+TP+I+K ++ E+L L + ER P S +E+G
Sbjct: 125 VTANLPYYVTTPIIMKLLE---EHLPLKGIVVMLQKEVAERMAADP-------SSKEYGS 174
Query: 194 ICLAYRDMCE 203
+ +A + E
Sbjct: 175 LSIAVQFYTE 184
>gi|424824982|ref|ZP_18249969.1| dimethyladenosine transferase [Chlamydophila abortus LLG]
gi|333410081|gb|EGK69068.1| dimethyladenosine transferase [Chlamydophila abortus LLG]
Length = 278
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 16/127 (12%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
R K LSQNFL + + KI+ + G+ V E+GPG G++T ++N+ A +V +EKD
Sbjct: 19 RPKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQG-AHVVALEKD 77
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEGLPGIRIIGNLPFNV 142
P F L L P+H + D + + S+ + + W +G R++ NLP+++
Sbjct: 78 PMFEETLKQL------PIHLEITDACKYPL----SQLQDQGWQGKG----RVVANLPYHI 123
Query: 143 STPLIIK 149
+TPL+ K
Sbjct: 124 TTPLLTK 130
>gi|120602408|ref|YP_966808.1| dimethyladenosine transferase [Desulfovibrio vulgaris DP4]
gi|166221661|sp|A1VD65.1|RSMA_DESVV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|120562637|gb|ABM28381.1| dimethyladenosine transferase [Desulfovibrio vulgaris DP4]
Length = 266
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K L QNFL + + +I + V E+GPGPG++TR I PARL L+EKD
Sbjct: 4 RAKKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKD 63
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
+ + A L D + F + + D W ++IGNLP+NV+
Sbjct: 64 HHWAREHHLHPLAGTPEAQVVLTDALLFPWERL---DAAHPW-------KVIGNLPYNVA 113
Query: 144 TPLI 147
+PL+
Sbjct: 114 SPLM 117
>gi|414154356|ref|ZP_11410675.1| Ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411454147|emb|CCO08579.1| Ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 294
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 10/171 (5%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
++R+II+ + + K L QNFL + + +KIV+ A + V E+GPG G++TR L R
Sbjct: 9 AVREIIRAHGFKVRKALGQNFLLDANIIEKIVQAAELSREDLVFEIGPGLGTLTRR-LAR 67
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
+++ +E D P L P H GD + + E + + G
Sbjct: 68 SAGQVIAVELDTNLLPILAETLADFPNTRVVH-GDALQADFDKLAGEYAGGIFGQPGRGY 126
Query: 133 RIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRP 183
+++ NLP+ ++TPL++ +LL Q +V ++++ +L P
Sbjct: 127 KLVANLPYYITTPLLM--------HLLTGGFNLQCLVVMMQKEVADRLLAP 169
>gi|386361194|ref|YP_006059439.1| dimethyladenosine transferase [Thermus thermophilus JL-18]
gi|383510221|gb|AFH39653.1| dimethyladenosine transferase [Thermus thermophilus JL-18]
Length = 271
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
S+R +++ + L A K+ QNFL +IV A TG V EVGPG G++TR++L
Sbjct: 9 SVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA 67
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
A + IEKD R P L+ S PV D + ++ W E G
Sbjct: 68 -GAEVTAIEKDLRLRPVLE--ETLSGLPVRLVFQDALLYS------------WEEVPQGS 112
Query: 133 RIIGNLPFNVSTPLIIKWIQ 152
++ NLP+N++TPL+ + ++
Sbjct: 113 FLVANLPYNIATPLVTRLLK 132
>gi|302388630|ref|YP_003824451.1| dimethyladenosine transferase [Thermosediminibacter oceani DSM
16646]
gi|302199258|gb|ADL06828.1| dimethyladenosine transferase [Thermosediminibacter oceani DSM
16646]
Length = 282
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 11/139 (7%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R I++ + +R K+L Q+FL + K++ A +EV E+GPG G +T L RR
Sbjct: 4 RAIMREFGIRPSKRLGQHFLIDEAPLYKMLEAARLNESDEVLEIGPGLGVLTLE-LCRRA 62
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-IR 133
++V +EKDP P L+ L + S + DV+ M+ + W E G +
Sbjct: 63 KKVVAVEKDPNLIPVLEKLTK-SYNNICLLREDVLKLDMEKL--------WREYFDGKFK 113
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ +++P+I+K I
Sbjct: 114 VVANLPYYITSPVIMKIIN 132
>gi|407694817|ref|YP_006819605.1| ribosomal RNA small subunit methyltransferase A [Alcanivorax
dieselolei B5]
gi|407252155|gb|AFT69262.1| Ribosomal RNA small subunit methyltransferase A [Alcanivorax
dieselolei B5]
Length = 257
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 15/130 (11%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ Q+FL +P + D++VR + G ++ E+GPG G++T +L + A L ++E D
Sbjct: 5 RARKRFGQHFLHDPGIIDRLVRTVAPMAGQKLVEIGPGRGALTYPLLEQV-AHLDVVELD 63
Query: 84 PRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
+ +L +A P + H D + F + + + + +R++GNLP+N+
Sbjct: 64 ---RDLIHLLREAVPEERLTIHQADALRFDFRPLAGDLK----------LRVVGNLPYNI 110
Query: 143 STPLIIKWIQ 152
STPLI ++
Sbjct: 111 STPLIFHLLE 120
>gi|407979101|ref|ZP_11159923.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sp. HYC-10]
gi|407414317|gb|EKF35970.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sp. HYC-10]
Length = 292
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 16/147 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + D+IV +A V E+GPG G++T L +R
Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEITDETGVIEIGPGIGALTEQ-LAKRA 70
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG--- 131
++ E D R P L+ SP D ++ Q++ D R+ E
Sbjct: 71 KKVTAFEIDQRLLPILN--DTLSPY-------DNVTIIHQDVLKADVRKVMEEQFADCKE 121
Query: 132 IRIIGNLPFNVSTPLIIKWIQAISENL 158
+ ++ NLP+ V+TP+I+K ++ ENL
Sbjct: 122 VMVVANLPYYVTTPIIMKLLE---ENL 145
>gi|254372526|ref|ZP_04988015.1| dimethyladenosine transferase [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570253|gb|EDN35907.1| dimethyladenosine transferase [Francisella novicida GA99-3549]
Length = 262
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
YK +A K L QNFL + + KIV+ A + V E+GPG G++TR +L+ + ++
Sbjct: 3 YKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLLS-SSNNVSVV 61
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D L Q P H + D + F + ++ + ++ I++IGNLP+
Sbjct: 62 EFDASVIDTLIANCQKYGTP-HIYNQDFLKFDISSLENSSNQK--------IKLIGNLPY 112
Query: 141 NVSTPLIIKWIQ 152
N+S+P++ K I+
Sbjct: 113 NISSPILFKVIK 124
>gi|89256872|ref|YP_514234.1| dimethyladenosine transferase [Francisella tularensis subsp.
holarctica LVS]
gi|115315251|ref|YP_763974.1| dimethyladenosine transferase [Francisella tularensis subsp.
holarctica OSU18]
gi|134302453|ref|YP_001122423.1| dimethyladenosine transferase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|156503047|ref|YP_001429112.1| dimethyladenosine transferase [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|187932059|ref|YP_001892044.1| dimethyladenosine transferase [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254368148|ref|ZP_04984168.1| dimethyladenosine transferase, kasugamycin resistance [Francisella
tularensis subsp. holarctica 257]
gi|254369747|ref|ZP_04985757.1| dimethyladenosine transferase [Francisella tularensis subsp.
holarctica FSC022]
gi|290953903|ref|ZP_06558524.1| dimethyladenosine transferase [Francisella tularensis subsp.
holarctica URFT1]
gi|421752323|ref|ZP_16189352.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Francisella tularensis subsp. tularensis AS_713]
gi|421754189|ref|ZP_16191168.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Francisella tularensis subsp. tularensis 831]
gi|421757914|ref|ZP_16194780.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Francisella tularensis subsp. tularensis 80700103]
gi|421759751|ref|ZP_16196578.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Francisella tularensis subsp. tularensis 70102010]
gi|422939165|ref|YP_007012312.1| dimethyladenosine transferase [Francisella tularensis subsp.
holarctica FSC200]
gi|423051244|ref|YP_007009678.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Francisella
tularensis subsp. holarctica F92]
gi|424675071|ref|ZP_18111983.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Francisella tularensis subsp. tularensis 70001275]
gi|119365026|sp|Q2A218.1|RSMA_FRATH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|122324752|sp|Q0BKP7.1|RSMA_FRATO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|166221665|sp|A7NDV3.1|RSMA_FRATF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|166221667|sp|A4IZF1.1|RSMA_FRATW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226732583|sp|B2SDQ1.1|RSMA_FRATM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|89144703|emb|CAJ80034.1| dimethyladenosine transferase , kasugamycin resistance [Francisella
tularensis subsp. holarctica LVS]
gi|115130150|gb|ABI83337.1| dimethyladenosine transferase [Francisella tularensis subsp.
holarctica OSU18]
gi|134050230|gb|ABO47301.1| dimethyladenosine transferase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134253958|gb|EBA53052.1| dimethyladenosine transferase, kasugamycin resistance [Francisella
tularensis subsp. holarctica 257]
gi|156253650|gb|ABU62156.1| dimethyladenosine transferase [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|157122706|gb|EDO66835.1| dimethyladenosine transferase [Francisella tularensis subsp.
holarctica FSC022]
gi|187712968|gb|ACD31265.1| dimethyladenosine transferase [Francisella tularensis subsp.
mediasiatica FSC147]
gi|407294316|gb|AFT93222.1| dimethyladenosine transferase [Francisella tularensis subsp.
holarctica FSC200]
gi|409085214|gb|EKM85363.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Francisella tularensis subsp. tularensis 831]
gi|409085488|gb|EKM85629.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Francisella tularensis subsp. tularensis AS_713]
gi|409090130|gb|EKM90153.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Francisella tularensis subsp. tularensis 70102010]
gi|409091450|gb|EKM91448.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Francisella tularensis subsp. tularensis 80700103]
gi|417434326|gb|EKT89285.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Francisella tularensis subsp. tularensis 70001275]
gi|421951966|gb|AFX71215.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Francisella tularensis subsp. holarctica F92]
Length = 262
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
YK +A K L QNFL + + KIV+ A + V E+GPG G++TR +L+ + ++
Sbjct: 3 YKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLLS-SSNNVSVV 61
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D L Q P H + D + F + ++ + ++ I++IGNLP+
Sbjct: 62 EFDASVIDTLIANCQKYGTP-HIYNQDFLKFDISSLENSSNQK--------IKLIGNLPY 112
Query: 141 NVSTPLIIKWIQ 152
N+S+P++ K I+
Sbjct: 113 NISSPILFKVIK 124
>gi|333373013|ref|ZP_08464932.1| dimethyladenosine transferase [Desmospora sp. 8437]
gi|332971060|gb|EGK10030.1| dimethyladenosine transferase [Desmospora sp. 8437]
Length = 294
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 17/189 (8%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R ++ LR K L Q+FL + R+ DK++ AG V E+GPG G++T L
Sbjct: 14 RQLLAERGLRLKKSLGQHFLTDRRILDKMMEAAGLGPEAGVLEIGPGIGALTER-LAVEA 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
++V +E D R P L L P V GDVMS + + +D D S I +
Sbjct: 73 GQVVAVELDERLIPVLSSLFSDQPH-VRIVQGDVMSLDLSRLL-QDHLGDCSR----ISV 126
Query: 135 IGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQI 194
+ NLP+ V+TP++++ ++ E L + + + ER P + Y G I
Sbjct: 127 VANLPYYVTTPILMRLLE---EKLPLDRIVIMIQKEVAERLTASPGSKAY-------GSI 176
Query: 195 CLAYRDMCE 203
+A R E
Sbjct: 177 TVATRYYAE 185
>gi|431452570|ref|ZP_19514076.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1630]
gi|431760765|ref|ZP_19549359.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E3346]
gi|430585031|gb|ELB23336.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1630]
gi|430623435|gb|ELB60127.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E3346]
Length = 294
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K L QNFL EP + KIV A V EVGPG G++T L + ++V E D R
Sbjct: 26 KSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQ-LAKHAKQVVAFEIDDRL 84
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P L A + ++ V ++ S R + E LP ++++ NLP+ ++TP+
Sbjct: 85 IPVL-----ADTMQPYDNVTIVHQDILKTDLSTAVRETFHEELP-LKVVANLPYYITTPI 138
Query: 147 IIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQEFGQICLAY 198
++ ++++ NL+ + + + +R +P + Y ++VQ + + LA+
Sbjct: 139 MMHFLES---NLVVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEASLAF 190
>gi|429503575|ref|YP_007184759.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|452854105|ref|YP_007495788.1| Ribosomal RNA small subunit methyltransferase A [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|429485165|gb|AFZ89089.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|452078365|emb|CCP20115.1| Ribosomal RNA small subunit methyltransferase A [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 293
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + D+IV +A V E+GPG G++T L +R
Sbjct: 13 KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGIGALTEQ-LAKRA 71
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ + DV+ ++++ E+ +D E I
Sbjct: 72 KKVVAFEIDQRLLPILNDTLSPYDNVTIIHQ--DVLKADVKSVI-EEHFQDCDE----IM 124
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
+ NLP+ V+TP+I+K ++ E+L L + ER P S +E+G
Sbjct: 125 VTANLPYYVTTPIIMKLLE---EHLPLKGIVVMLQKEVAERMAADP-------SSKEYGS 174
Query: 194 ICLAYRDMCE 203
+ +A + E
Sbjct: 175 LSIAVQFYTE 184
>gi|423485293|ref|ZP_17461980.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG6X1-2]
gi|401135870|gb|EJQ43466.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG6X1-2]
Length = 292
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI++ Y K L QNFL + + ++IV A + + E+GPG G++T L +R
Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDYAEIGSESGAIEIGPGIGALTEQ-LAKRA 69
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P LD LA S V DV+ + +FSE + EG +
Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYSNVTVINK--DVLKADVHEVFSE----QFEEG-QDVM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP++ K ++
Sbjct: 123 VVANLPYYITTPILFKLLE 141
>gi|385792482|ref|YP_005825458.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676628|gb|AEB27498.1| Dimethyladenosine transferase [Francisella cf. novicida Fx1]
Length = 262
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
YK +A K L QNFL + + KIV+ A + V E+GPG G++TR +L+ + ++
Sbjct: 3 YKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVIEIGPGLGALTRYLLS-SSNNVSVV 61
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D L Q P H + D + F + ++ + ++ I++IGNLP+
Sbjct: 62 EFDANVIDTLIANCQKYGTP-HIYNQDFLKFDISSLENSSNQK--------IKLIGNLPY 112
Query: 141 NVSTPLIIKWIQ 152
N+S+P++ K I+
Sbjct: 113 NISSPILFKVIK 124
>gi|420151262|ref|ZP_14658392.1| dimethyladenosine transferase [Actinomyces georgiae F0490]
gi|394772212|gb|EJF51573.1| dimethyladenosine transferase [Actinomyces georgiae F0490]
Length = 347
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 90/197 (45%), Gaps = 30/197 (15%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R I +R K L QNF+ + +IV AG G+EV EVGPG GS+T ++L
Sbjct: 49 VRAISGALGIRPTKALGQNFVHDAGTVRRIVAAAGVGEGDEVIEVGPGLGSLTLALLEAG 108
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGD-------VMSFTMQNMFSEDRRRDWS 126
AR+ +E DP +LA A P V +GD V + D DW
Sbjct: 109 -ARVRAVEIDP-------VLAAALPETVRARMGDAADRLHVVAADATAITGPADIGPDWP 160
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV---SLLERACVKPILRP 183
P +++ NLP+NV+ P+++ + + FP LV+ + +R P R
Sbjct: 161 ---PPAKLVANLPYNVAVPVLLAMLDS------FPTLTDVLVMVQAEVADRLAAGPGSRT 211
Query: 184 YQL-SVQE--FGQICLA 197
Y + SV+ +GQ A
Sbjct: 212 YGVPSVKAAWYGQATRA 228
>gi|293557287|ref|ZP_06675834.1| dimethyladenosine transferase [Enterococcus faecium E1039]
gi|425056955|ref|ZP_18460392.1| dimethyladenosine transferase [Enterococcus faecium 504]
gi|291600574|gb|EFF30879.1| dimethyladenosine transferase [Enterococcus faecium E1039]
gi|403041311|gb|EJY52333.1| dimethyladenosine transferase [Enterococcus faecium 504]
Length = 294
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K L QNFL EP + KIV A V EVGPG G++T L + ++V E D R
Sbjct: 26 KSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQ-LAKHAKQVVAFEIDDRL 84
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P L A + ++ V ++ S R + E LP ++++ NLP+ ++TP+
Sbjct: 85 IPVL-----ADTMQPYDNVTIVHQDILKTDLSTAVRETFHEELP-LKVVANLPYYITTPI 138
Query: 147 IIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQEFGQICLAY 198
++ ++++ NL+ + + + +R +P + Y ++VQ + + LA+
Sbjct: 139 MMHFLES---NLVVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEASLAF 190
>gi|404496164|ref|YP_006720270.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Geobacter
metallireducens GS-15]
gi|418065412|ref|ZP_12702785.1| dimethyladenosine transferase [Geobacter metallireducens RCH3]
gi|118600869|sp|Q39W34.1|RSMA_GEOMG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|78193773|gb|ABB31540.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase
[Geobacter metallireducens GS-15]
gi|373562152|gb|EHP88369.1| dimethyladenosine transferase [Geobacter metallireducens RCH3]
Length = 275
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 9/129 (6%)
Query: 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
+RA K L QNFL + + +I + + EVGPG G++T +L R ARLV +E
Sbjct: 6 IRARKALGQNFLVDRHVLARIADIVDMRPDDRILEVGPGKGALT-EMLAHRCARLVAVEL 64
Query: 83 DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
D R P L + +P H GD++ ++++ + + W ++ NLP+N+
Sbjct: 65 DTRLVPVLRQAFRDNPRVEIVH-GDILEIDLRDLLAYEGGERW-------KVAANLPYNI 116
Query: 143 STPLIIKWI 151
STP++ ++
Sbjct: 117 STPVLFAFL 125
>gi|379011470|ref|YP_005269282.1| ribsosomal RNA small subunit methyltransferease RsmA
[Acetobacterium woodii DSM 1030]
gi|375302259|gb|AFA48393.1| ribsosomal RNA small subunit methyltransferease RsmA
[Acetobacterium woodii DSM 1030]
Length = 296
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 20/191 (10%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
I ++K Y L K+ QNFL + + KIVR A + V E+GPG G++T++ L+
Sbjct: 10 IETLLKKYDLHFNKRFGQNFLTDENIVQKIVRAADIGEADLVLEIGPGIGTMTQA-LSES 68
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
++V +E D + P L + C V GD++ ++ + ED +P +
Sbjct: 69 AGKIVTVEIDKKLIPVLH--ETLNDCDNVTIVQGDILKTNVKEILGEDLLT-----MP-L 120
Query: 133 RIIGNLPFNVSTPLIIKWIQAI--SENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV- 188
+I+ NLP+ ++TP+I+ ++++ E++ F K + ER C P + Y LS+
Sbjct: 121 KIVANLPYYITTPIIMGFLESDLPIESMTFLIQKE-----VGERLCGVPSTKSYGSLSIV 175
Query: 189 -QEFGQICLAY 198
Q + I + +
Sbjct: 176 AQFYADISIDF 186
>gi|320449691|ref|YP_004201787.1| dimethyladenosine transferase [Thermus scotoductus SA-01]
gi|320149860|gb|ADW21238.1| dimethyladenosine transferase [Thermus scotoductus SA-01]
Length = 272
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 16/139 (11%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
IR+++K + L A K+L QNFL +IV A TG V EVGPG G +TR+ L
Sbjct: 11 IRELLKRHGLFADKRLGQNFLVSEVHLRRIVEAAKPFTG-PVYEVGPGLGVLTRA-LAEA 68
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A++ IEKD R P L+ + PV D +++ W E
Sbjct: 69 GAQVTAIEKDLRLKPVLEETLKG--LPVRLVFADALAY------------PWEEVPENSL 114
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+N++TPL+ + ++
Sbjct: 115 LVANLPYNIATPLVTRLLR 133
>gi|430761489|ref|YP_007217346.1| Dimethyladenosine transferase [Thioalkalivibrio nitratireducens DSM
14787]
gi|430011113|gb|AGA33865.1| Dimethyladenosine transferase [Thioalkalivibrio nitratireducens DSM
14787]
Length = 276
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 18/130 (13%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP 84
A K+ QNFL +P + +IV + + E+GPG G++TR +L R L ++E D
Sbjct: 7 ARKRFGQNFLHDPGVLARIVAAIAPARDDSMIEIGPGLGALTRPLLERV-EHLEVVELDR 65
Query: 85 RFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG---IRIIGNLPFN 141
P L L A+P + H D ++F D++ PG +R++GNLP+N
Sbjct: 66 DLIPHLRTL--AAPDRLTIHSADALAF------------DFAHRAPGPGRLRVVGNLPYN 111
Query: 142 VSTPLIIKWI 151
+STPL+ +
Sbjct: 112 ISTPLLFHLL 121
>gi|320532470|ref|ZP_08033295.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320135315|gb|EFW27438.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 364
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 14/146 (9%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R + + +R K L QNF+ + +IV++AG + V E+GPG GS+T ++L
Sbjct: 70 VRGLSQALGIRPTKTLGQNFVHDAGTVRRIVKSAGVRPDDTVLEIGPGLGSLTLALLEAG 129
Query: 74 PARLVLIEKDPRFTPCL-----DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128
AR++ +E DP L D + QA+ + D +S T E G
Sbjct: 130 -ARVIAVEIDPALARALPVTVADRMPQAA-GRLSLIEADALSITGPQSLDE-------TG 180
Query: 129 LPGIRIIGNLPFNVSTPLIIKWIQAI 154
P R++ NLP+NV+ P+++ ++A+
Sbjct: 181 NPPTRLVANLPYNVAVPVLLTALEAL 206
>gi|381160892|ref|ZP_09870124.1| dimethyladenosine transferase [Thiorhodovibrio sp. 970]
gi|380878956|gb|EIC21048.1| dimethyladenosine transferase [Thiorhodovibrio sp. 970]
Length = 290
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 39/207 (18%)
Query: 22 KLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIE 81
K +A K+ QNFL +P + +I+ + + E+GPG G++TR +L RL IE
Sbjct: 29 KHQARKRFGQNFLHDPFIIQRILAAIAPKPDDALVEIGPGQGALTRGLLAAG-GRLDAIE 87
Query: 82 KDPRFTPCLDMLAQASPC-PVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG--IRIIGNL 138
D L Q + C +H H D + F D++ PG +RIIGNL
Sbjct: 88 LDRDLIAPLHQ--QCAGCGDLHLHQADALRF------------DFTALRPGHPLRIIGNL 133
Query: 139 PFNVSTPLIIKWI---QAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQIC 195
P+N+STPL+ + QAI++ L L ++ER P + Y G++
Sbjct: 134 PYNISTPLLFHMLDQAQAIADMHLM------LQKEVVERIVAAPGSKAY-------GRLS 180
Query: 196 LAYRDMCEEMPGLYEYTLEDTPGDIEP 222
+ + C+ E+ PG +P
Sbjct: 181 VMVQSRCQA-----EWLFHIGPGAFKP 202
>gi|254429167|ref|ZP_05042874.1| dimethyladenosine transferase [Alcanivorax sp. DG881]
gi|196195336|gb|EDX90295.1| dimethyladenosine transferase [Alcanivorax sp. DG881]
Length = 270
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 28/183 (15%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
R K+ Q+FL + L D+++R G G+ + E+GPG G++T +L P L ++E D
Sbjct: 5 RTRKRFGQHFLHDRNLVDRMIRTLGLQAGDTLVEIGPGRGALTYPLLEEIP-HLHVVELD 63
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L + +P + H D + F + + D+ +R+IGNLP+N+S
Sbjct: 64 RDLIALLRQ--ENTPDRLSIHESDALRFDFRALKPADK---------PLRVIGNLPYNIS 112
Query: 144 TPLIIKWI---QAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 200
TPLI + AIS+ L ++ER P +++G++ + +
Sbjct: 113 TPLIFHLLAQADAISDMTFM------LQKEVVERLTASP-------GTRDWGRLSIMVQY 159
Query: 201 MCE 203
C+
Sbjct: 160 HCQ 162
>gi|56707611|ref|YP_169507.1| dimethyladenosine transferase [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670082|ref|YP_666639.1| dimethyladenosine transferase [Francisella tularensis subsp.
tularensis FSC198]
gi|254370128|ref|ZP_04986134.1| dimethyladenosine transferase [Francisella tularensis subsp.
tularensis FSC033]
gi|254874431|ref|ZP_05247141.1| dimethyladenosine transferase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379716871|ref|YP_005305207.1| Dimethyladenosine transferase [Francisella tularensis subsp.
tularensis TIGB03]
gi|379725475|ref|YP_005317661.1| Dimethyladenosine transferase [Francisella tularensis subsp.
tularensis TI0902]
gi|385794233|ref|YP_005830639.1| dimethyladenosine transferase [Francisella tularensis subsp.
tularensis NE061598]
gi|421755101|ref|ZP_16192054.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Francisella tularensis subsp. tularensis 80700075]
gi|62900471|sp|Q5NHI5.1|RSMA_FRATT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|118600868|sp|Q14IY7.1|RSMA_FRAT1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|56604103|emb|CAG45102.1| dimethyladenosine transferase , kasugamycin resistance [Francisella
tularensis subsp. tularensis SCHU S4]
gi|110320415|emb|CAL08485.1| dimethyladenosine transferase , kasugamycin resistance [Francisella
tularensis subsp. tularensis FSC198]
gi|151568372|gb|EDN34026.1| dimethyladenosine transferase [Francisella tularensis subsp.
tularensis FSC033]
gi|254840430|gb|EET18866.1| dimethyladenosine transferase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158768|gb|ADA78159.1| dimethyladenosine transferase [Francisella tularensis subsp.
tularensis NE061598]
gi|377826924|gb|AFB80172.1| Dimethyladenosine transferase [Francisella tularensis subsp.
tularensis TI0902]
gi|377828548|gb|AFB78627.1| Dimethyladenosine transferase [Francisella tularensis subsp.
tularensis TIGB03]
gi|409088975|gb|EKM89030.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Francisella tularensis subsp. tularensis 80700075]
Length = 262
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
YK +A K L QNFL + + KIV+ A + V E+GPG G++TR +L+ + ++
Sbjct: 3 YKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLLS-SSNNVSVV 61
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D L Q P H + D + F + ++ + ++ I++IGNLP+
Sbjct: 62 EFDASVIDTLIANCQKYGTP-HIYNQDFLKFDISSLENSSNQK--------IKLIGNLPY 112
Query: 141 NVSTPLIIKWIQ 152
N+S+P++ K I+
Sbjct: 113 NISSPILFKVIK 124
>gi|408373906|ref|ZP_11171598.1| ribosomal RNA adenine dimethylase [Alcanivorax hongdengensis
A-11-3]
gi|407766194|gb|EKF74639.1| ribosomal RNA adenine dimethylase [Alcanivorax hongdengensis
A-11-3]
Length = 270
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 15/136 (11%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
R K+ Q+FL + L D++VR G G+ + E+GPG G++T +L P L ++E D
Sbjct: 5 RTRKRFGQHFLHDRNLVDRLVRTLGLQPGDTLVEIGPGRGALTYPLLEEMP-HLHVVELD 63
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L + SP + H D + F + D + +R++GNLP+N+S
Sbjct: 64 RDLIALLRQ--ENSPERLTIHESDALRFDFTTLKPADGK---------LRVVGNLPYNIS 112
Query: 144 TPLIIKWI---QAISE 156
TPLI + AIS+
Sbjct: 113 TPLIFHLLAQSTAISD 128
>gi|118497159|ref|YP_898209.1| dimethyladenosine transferase [Francisella novicida U112]
gi|194323457|ref|ZP_03057234.1| dimethyladenosine transferase [Francisella novicida FTE]
gi|166221666|sp|A0Q5E0.1|RSMA_FRATN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|118423065|gb|ABK89455.1| dimethyladenosine transferase [Francisella novicida U112]
gi|194322312|gb|EDX19793.1| dimethyladenosine transferase [Francisella tularensis subsp.
novicida FTE]
Length = 262
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
YK +A K L QNFL + + KIV+ A + V E+GPG G++TR +L+ + ++
Sbjct: 3 YKTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVIEIGPGLGALTRYLLS-SSNNVSVV 61
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D L Q P H + D + F + ++ + ++ I++IGNLP+
Sbjct: 62 EFDASVIDTLIANCQKYGTP-HIYNQDFLKFDISSLENSSNQK--------IKLIGNLPY 112
Query: 141 NVSTPLIIKWIQ 152
N+S+P++ K I+
Sbjct: 113 NISSPILFKVIK 124
>gi|90580799|ref|ZP_01236602.1| dimethyladenosine transferase [Photobacterium angustum S14]
gi|90438067|gb|EAS63255.1| dimethyladenosine transferase [Vibrio angustum S14]
Length = 274
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL +P + D IV + + G + E+GPG G+IT + + + +IE D
Sbjct: 11 RARKRFGQNFLKDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEQV-GKLVDKFTVIELD 69
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L+ + + H GD M F + E+ + +RI GNLP+N+S
Sbjct: 70 RDLAERLENHPDLA-SKLTIHQGDAMRFDFTQLIKENNK---------LRIFGNLPYNIS 119
Query: 144 TPLII 148
TPL+
Sbjct: 120 TPLMF 124
>gi|338994472|ref|ZP_08635188.1| dimethyladenosine transferase [Halomonas sp. TD01]
gi|338766756|gb|EGP21672.1| dimethyladenosine transferase [Halomonas sp. TD01]
Length = 276
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL + + +IVR G + + E+GPG G++T +L +L +IE D
Sbjct: 9 RARKRFGQNFLRDLGIISRIVRAIGPRESDRLVEIGPGQGALTAPLLE-AAGKLEVIELD 67
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L + P V H GD + F + + P +R++GNLP+N+S
Sbjct: 68 RDLIPGLRVQFFNYPDFV-IHEGDALKFDFAALKGDG---------PALRVVGNLPYNIS 117
Query: 144 TPLIIKWI 151
TPLI+ +
Sbjct: 118 TPLIVHLL 125
>gi|440531520|emb|CCP57030.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis F/SotonF3]
Length = 277
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 16/129 (12%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K LSQNFL + + KI+ A G+ V E+GPG G+++ +L++ A ++ +EKD
Sbjct: 19 RAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLSQW-ANVIALEKD 77
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI-RIIGNLPFNV 142
P F L L P+ + D + + ++ ED+ G G RI+ NLP+++
Sbjct: 78 PMFEESLSQL------PMDIEITDACEYPLTSL--EDK------GWKGKGRIVANLPYHI 123
Query: 143 STPLIIKWI 151
+TPL+ K+
Sbjct: 124 TTPLLTKFF 132
>gi|237804701|ref|YP_002888855.1| dimethyladenosine transferase [Chlamydia trachomatis B/TZ1A828/OT]
gi|231273001|emb|CAX09913.1| dimethyladenosine transferase [Chlamydia trachomatis B/TZ1A828/OT]
Length = 277
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 16/129 (12%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K LSQNFL + + KI+ A G+ V E+GPG G+++ +L+ + A ++ +EKD
Sbjct: 19 RAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLS-QGANVIALEKD 77
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI-RIIGNLPFNV 142
P F L L P+ + D + + ++ ED+ G G RI+ NLP+++
Sbjct: 78 PMFEESLSQL------PMDIEITDACKYPLTSL--EDK------GWKGKGRIVANLPYHI 123
Query: 143 STPLIIKWI 151
+TPL+ K+
Sbjct: 124 TTPLLTKFF 132
>gi|329925506|ref|ZP_08280380.1| dimethyladenosine transferase [Paenibacillus sp. HGF5]
gi|328939789|gb|EGG36129.1| dimethyladenosine transferase [Paenibacillus sp. HGF5]
Length = 294
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++II + K L QNFL + + KIV AG E+GPG G++T L +
Sbjct: 14 KEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTEK-LAQTA 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
+ +E D R P L + + V H GDV+ + +F R+D+ + + + +
Sbjct: 73 GTVTAVEIDQRLIPILKEVLEPY-GNVRVHHGDVLKVDLHELF----RQDFGD-VSKVSV 126
Query: 135 IGNLPFNVSTPLIIKWIQ 152
+ NLP+ V+TP+++K ++
Sbjct: 127 VANLPYYVTTPILMKLLE 144
>gi|374321382|ref|YP_005074511.1| dimethyladenosine transferase [Paenibacillus terrae HPL-003]
gi|357200391|gb|AET58288.1| dimethyladenosine transferase [Paenibacillus terrae HPL-003]
Length = 294
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++II+ + K L QNFL + + +KIV +AG E+GPG G++T L +
Sbjct: 14 KEIIQRHGFSFKKSLGQNFLIDQNILNKIVNSAGLDETKGALEIGPGIGALTEK-LAQSA 72
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+ +E D R P L ++LA V GDV+ ++ +F+ D G+ +
Sbjct: 73 KVVTAVEIDQRLLPILEEVLAPYEHVKVRH--GDVLKLDLREVFASD-----FAGVSKVS 125
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ V+TP++++ ++
Sbjct: 126 VVANLPYYVTTPILMRLLE 144
>gi|237802779|ref|YP_002887973.1| dimethyladenosine transferase [Chlamydia trachomatis B/Jali20/OT]
gi|231274013|emb|CAX10806.1| dimethyladenosine transferase [Chlamydia trachomatis B/Jali20/OT]
Length = 277
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 16/129 (12%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K LSQNFL + + KI+ A G+ V E+GPG G+++ +L+ + A ++ +EKD
Sbjct: 19 RAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLS-QGANVIALEKD 77
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI-RIIGNLPFNV 142
P F L L P+ + D + + ++ ED+ G G RI+ NLP+++
Sbjct: 78 PMFEESLSQL------PMDIEITDACKYPLTSL--EDK------GWKGKGRIVANLPYHI 123
Query: 143 STPLIIKWI 151
+TPL+ K+
Sbjct: 124 TTPLLTKFF 132
>gi|376282360|ref|YP_005156186.1| dimethyladenosine transferase [Chlamydia trachomatis A2497]
gi|385270038|ref|YP_005813198.1| Dimethyladenosine transferase [Chlamydia trachomatis A2497]
gi|347975178|gb|AEP35199.1| Dimethyladenosine transferase [Chlamydia trachomatis A2497]
gi|371908390|emb|CAX09019.1| dimethyladenosine transferase [Chlamydia trachomatis A2497]
gi|438690280|emb|CCP49537.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis A/7249]
gi|438691364|emb|CCP48638.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis A/5291]
gi|438692737|emb|CCP47739.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis A/363]
Length = 277
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 16/129 (12%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K LSQNFL + + KI+ A G+ V E+GPG G+++ +L+ + A ++ +EKD
Sbjct: 19 RAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLS-QGANVIALEKD 77
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI-RIIGNLPFNV 142
P F L L P+ + D + + ++ ED+ G G RI+ NLP+++
Sbjct: 78 PMFEESLSQL------PMDIEITDACKYPLTSL--EDK------GWKGKGRIVANLPYHI 123
Query: 143 STPLIIKWI 151
+TPL+ K+
Sbjct: 124 TTPLLTKFF 132
>gi|254491379|ref|ZP_05104558.1| dimethyladenosine transferase [Methylophaga thiooxidans DMS010]
gi|224462857|gb|EEF79127.1| dimethyladenosine transferase [Methylophaga thiooxydans DMS010]
Length = 266
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 26/182 (14%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL + + + IV G + E+GPG G++T+ +L+ R L +IE D
Sbjct: 8 RARKRFGQNFLHDEGIIEAIVEAISPAKGQHLVEIGPGRGALTKPLLS-RCDWLDVIELD 66
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L Q + ++ H D + F D R +G P +R+IGNLP+N++
Sbjct: 67 RDLIPLLR--KQLNDEQLNIHEADALRF--------DYRSLQKDGEP-LRVIGNLPYNIT 115
Query: 144 TPLIIKWIQAIS--ENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDM 201
TPL+ + E++ F L ++ER C +P +++G++ + +
Sbjct: 116 TPLLFHLLGQGDCIEDMCF-----MLQREVVERICAQP-------GNKQYGRLSIMMQHQ 163
Query: 202 CE 203
C+
Sbjct: 164 CQ 165
>gi|389571477|ref|ZP_10161572.1| dimethyladenosine transferase [Bacillus sp. M 2-6]
gi|388428877|gb|EIL86667.1| dimethyladenosine transferase [Bacillus sp. M 2-6]
Length = 292
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 16/147 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + D+IV +A V E+GPG G++T L +R
Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEITDETGVIEIGPGIGALTEQ-LAKRA 70
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG--- 131
++ E D R P L+ SP D ++ Q++ D R+ E
Sbjct: 71 KKVTAFEIDQRLLPILN--DTLSPY-------DNVTIIHQDVLKADVRKVIEEQFADCKE 121
Query: 132 IRIIGNLPFNVSTPLIIKWIQAISENL 158
+ ++ NLP+ V+TP+I+K ++ ENL
Sbjct: 122 VMVVANLPYYVTTPIIMKLLE---ENL 145
>gi|15605077|ref|NP_219862.1| dimethyladenosine transferase [Chlamydia trachomatis D/UW-3/CX]
gi|76789080|ref|YP_328166.1| dimethyladenosine transferase [Chlamydia trachomatis A/HAR-13]
gi|166154566|ref|YP_001654684.1| dimethyladenosine transferase [Chlamydia trachomatis 434/Bu]
gi|166155441|ref|YP_001653696.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|301335829|ref|ZP_07224073.1| dimethyladenosine transferase [Chlamydia trachomatis L2tet1]
gi|339626024|ref|YP_004717503.1| dimethyladenosine transferase [Chlamydia trachomatis L2c]
gi|385239868|ref|YP_005807710.1| dimethyladenosine transferase [Chlamydia trachomatis G/9768]
gi|385240791|ref|YP_005808632.1| dimethyladenosine transferase [Chlamydia trachomatis G/11222]
gi|385242644|ref|YP_005810483.1| dimethyladenosine transferase [Chlamydia trachomatis G/9301]
gi|385243561|ref|YP_005811407.1| Dimethyladenosine transferase [Chlamydia trachomatis D-EC]
gi|385244441|ref|YP_005812285.1| Dimethyladenosine transferase [Chlamydia trachomatis D-LC]
gi|385246254|ref|YP_005815076.1| dimethyladenosine transferase [Chlamydia trachomatis G/11074]
gi|27151560|sp|O84358.1|RSMA_CHLTR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|119365015|sp|Q3KM04.1|RSMA_CHLTA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226729770|sp|B0B7S3.1|RSMA_CHLT2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226729771|sp|B0BBY8.1|RSMA_CHLTB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|3328775|gb|AAC67949.1| Dimethyladenosine Transferase [Chlamydia trachomatis D/UW-3/CX]
gi|76167610|gb|AAX50618.1| dimethyladenosine transferase [Chlamydia trachomatis A/HAR-13]
gi|165930554|emb|CAP04049.1| dimethyladenosine transferase [Chlamydia trachomatis 434/Bu]
gi|165931429|emb|CAP07003.1| dimethyladenosine transferase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|296435873|gb|ADH18047.1| dimethyladenosine transferase [Chlamydia trachomatis G/9768]
gi|296436799|gb|ADH18969.1| dimethyladenosine transferase [Chlamydia trachomatis G/11222]
gi|296437733|gb|ADH19894.1| dimethyladenosine transferase [Chlamydia trachomatis G/11074]
gi|297140232|gb|ADH96990.1| dimethyladenosine transferase [Chlamydia trachomatis G/9301]
gi|297748484|gb|ADI51030.1| Dimethyladenosine transferase [Chlamydia trachomatis D-EC]
gi|297749364|gb|ADI52042.1| Dimethyladenosine transferase [Chlamydia trachomatis D-LC]
gi|339461258|gb|AEJ77761.1| dimethyladenosine transferase [Chlamydia trachomatis L2c]
gi|440525271|emb|CCP50522.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis K/SotonK1]
gi|440526158|emb|CCP51642.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/8200/07]
gi|440528838|emb|CCP54322.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis D/SotonD6]
gi|440535983|emb|CCP61496.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/795]
gi|440536875|emb|CCP62389.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L1/440/LN]
gi|440537765|emb|CCP63279.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L1/1322/p2]
gi|440538655|emb|CCP64169.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L1/115]
gi|440540435|emb|CCP65949.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2/25667R]
gi|440541324|emb|CCP66838.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L3/404/LN]
gi|440542211|emb|CCP67725.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/UCH-2]
gi|440543102|emb|CCP68616.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Canada2]
gi|440543993|emb|CCP69507.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/LST]
gi|440544883|emb|CCP70397.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Ams1]
gi|440545773|emb|CCP71287.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/CV204]
gi|440914035|emb|CCP90452.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Ams2]
gi|440914925|emb|CCP91342.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Ams3]
gi|440915817|emb|CCP92234.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Canada1]
gi|440916711|emb|CCP93128.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Ams4]
gi|440917601|emb|CCP94018.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Ams5]
Length = 277
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 16/129 (12%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K LSQNFL + + KI+ A G+ V E+GPG G+++ +L+ + A ++ +EKD
Sbjct: 19 RAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLS-QGANVIALEKD 77
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI-RIIGNLPFNV 142
P F L L P+ + D + + ++ ED+ G G RI+ NLP+++
Sbjct: 78 PMFEESLSQL------PMDIEITDACKYPLTSL--EDK------GWKGKGRIVANLPYHI 123
Query: 143 STPLIIKWI 151
+TPL+ K+
Sbjct: 124 TTPLLTKFF 132
>gi|261403903|ref|YP_003240144.1| dimethyladenosine transferase [Paenibacillus sp. Y412MC10]
gi|261280366|gb|ACX62337.1| dimethyladenosine transferase [Paenibacillus sp. Y412MC10]
Length = 294
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++II + K L QNFL + + KIV AG E+GPG G++T L +
Sbjct: 14 KEIISRHGFSFKKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTEK-LAQTA 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
+ +E D R P L + + V H GDV+ + +F R+D+++ + + +
Sbjct: 73 GTVTAVEIDQRLIPILREVLEPY-GNVRVHHGDVLKVDLHELF----RQDFAD-VSKVSV 126
Query: 135 IGNLPFNVSTPLIIKWIQ 152
+ NLP+ V+TP+++K ++
Sbjct: 127 VANLPYYVTTPILMKLLE 144
>gi|89075559|ref|ZP_01161964.1| dimethyladenosine transferase [Photobacterium sp. SKA34]
gi|89048699|gb|EAR54271.1| dimethyladenosine transferase [Photobacterium sp. SKA34]
Length = 274
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL +P + D IV + + G + E+GPG G+IT + + + +IE D
Sbjct: 11 RARKRFGQNFLKDPYIIDGIVSSINPLPGQNLVEIGPGLGAITEQV-GKLVDKFTVIELD 69
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L+ + + H GD M F + E+ + +RI GNLP+N+S
Sbjct: 70 RDLAERLENHPDLA-SKLTIHQGDAMRFDFTQLIKENNK---------LRIFGNLPYNIS 119
Query: 144 TPLII 148
TPL+
Sbjct: 120 TPLMF 124
>gi|255506936|ref|ZP_05382575.1| dimethyladenosine transferase [Chlamydia trachomatis D(s)2923]
gi|385241724|ref|YP_005809564.1| dimethyladenosine transferase [Chlamydia trachomatis E/11023]
gi|385245331|ref|YP_005814154.1| dimethyladenosine transferase [Chlamydia trachomatis E/150]
gi|386262707|ref|YP_005815986.1| dimethyladenosine transferase [Chlamydia trachomatis Sweden2]
gi|389858046|ref|YP_006360288.1| dimethyladenosine transferase [Chlamydia trachomatis F/SW4]
gi|389858922|ref|YP_006361163.1| dimethyladenosine transferase [Chlamydia trachomatis E/SW3]
gi|389859798|ref|YP_006362038.1| dimethyladenosine transferase [Chlamydia trachomatis F/SW5]
gi|289525395|emb|CBJ14872.1| dimethyladenosine transferase [Chlamydia trachomatis Sweden2]
gi|296434947|gb|ADH17125.1| dimethyladenosine transferase [Chlamydia trachomatis E/150]
gi|296438667|gb|ADH20820.1| dimethyladenosine transferase [Chlamydia trachomatis E/11023]
gi|380249118|emb|CCE14410.1| dimethyladenosine transferase [Chlamydia trachomatis F/SW5]
gi|380249993|emb|CCE13521.1| dimethyladenosine transferase [Chlamydia trachomatis F/SW4]
gi|380250871|emb|CCE12632.1| dimethyladenosine transferase [Chlamydia trachomatis E/SW3]
gi|440527056|emb|CCP52540.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis D/SotonD1]
gi|440529730|emb|CCP55214.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis E/SotonE4]
gi|440530629|emb|CCP56113.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis E/SotonE8]
gi|440535097|emb|CCP60607.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis E/Bour]
Length = 277
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 16/129 (12%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K LSQNFL + + KI+ A G+ V E+GPG G+++ +L+ + A ++ +EKD
Sbjct: 19 RAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLS-QGANVIALEKD 77
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI-RIIGNLPFNV 142
P F L L P+ + D + + ++ ED+ G G RI+ NLP+++
Sbjct: 78 PMFEESLSQL------PMDIEITDACEYPLTSL--EDK------GWKGKGRIVANLPYHI 123
Query: 143 STPLIIKWI 151
+TPL+ K+
Sbjct: 124 TTPLLTKFF 132
>gi|405979621|ref|ZP_11037964.1| dimethyladenosine transferase [Actinomyces turicensis
ACS-279-V-Col4]
gi|404392037|gb|EJZ87098.1| dimethyladenosine transferase [Actinomyces turicensis
ACS-279-V-Col4]
Length = 363
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 20/188 (10%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
++ I +R K L QNF+ + +IVR G G+EV EVGPG GS+T +IL
Sbjct: 34 VKAIADALGIRPTKVLGQNFVHDAGTVRRIVRAGGVEAGDEVIEVGPGLGSLTLAILETG 93
Query: 74 PARLVLIEKDPRFTPCL--DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
AR+ +E DP L + A+ FH+ + + + + D DW P
Sbjct: 94 -ARVRAVEIDPPLARALPQTVGARMPEAADRFHVVNADATKINGV--ADFGVDWP---PP 147
Query: 132 IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV---SLLERACVKPILRPY---Q 185
+++ NLP+NV+ P+++ ++ FP LV+ + +R P R Y
Sbjct: 148 TKLVANLPYNVAVPVLLAMLE------RFPTLTDVLVMVQSEVADRLAAGPGSRTYGVPS 201
Query: 186 LSVQEFGQ 193
+ V +GQ
Sbjct: 202 VKVAWYGQ 209
>gi|307091946|gb|ADN28308.1| putative rRNA methyltransferase, partial [uncultured bacterium]
Length = 117
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
Query: 36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ 95
+ L IV G TG+ + E+GPG G++T L + RL L+EKD R L +
Sbjct: 2 DKNLARWIVDQLGVQTGDHIVEIGPGLGALT-GWLAQYDVRLTLVEKDGRMIQWLGQQFR 60
Query: 96 ASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ + FH+ D ++F ++ ++ G +RIIGNLP+ VSTPLI K+ A+S
Sbjct: 61 SDRVEL-FHI-DALNFDLRTLY----------GRGPVRIIGNLPYYVSTPLIAKYTAALS 108
>gi|302873237|ref|YP_003841870.1| dimethyladenosine transferase [Clostridium cellulovorans 743B]
gi|307688596|ref|ZP_07631042.1| dimethyladenosine transferase [Clostridium cellulovorans 743B]
gi|302576094|gb|ADL50106.1| dimethyladenosine transferase [Clostridium cellulovorans 743B]
Length = 282
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 27/194 (13%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
S +DI+ Y + K L QNFL + + + IV A + V E+GPG G++T+ +L
Sbjct: 5 STKDIVLKYNFKFTKSLGQNFLTDDSVLNDIVNGAEVNENDVVIEIGPGVGTLTKELLG- 63
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG- 131
+ +++ IE D P L L + +FT+ + + + D++E + G
Sbjct: 64 KAKKVIAIEVDSSLIPIL-----------QEELKEFDNFTL--IHKDATKVDFNELIEGE 110
Query: 132 --IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQ 189
++I+ NLP+ V+TP+I +LL K+ + ++++ I S +
Sbjct: 111 DTVKIVANLPYYVTTPIIT--------DLLNKKYNFTSITVMIQKEVADRI--NANPSSK 160
Query: 190 EFGQICLAYRDMCE 203
E+G + L + C+
Sbjct: 161 EYGALTLLVQYYCD 174
>gi|384439155|ref|YP_005653879.1| ribosomal RNA small subunit methyltransferase A [Thermus sp.
CCB_US3_UF1]
gi|359290288|gb|AEV15805.1| Ribosomal RNA small subunit methyltransferase A [Thermus sp.
CCB_US3_UF1]
Length = 272
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 16/145 (11%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RL ++R+++ + L A K+ QNFL +IV A ++G V EVGPG G +T
Sbjct: 4 RLTSPQAVRELLLRHGLFADKRFGQNFLVSEAYLRRIVEAAQPLSG-PVYEVGPGLGVLT 62
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
R+ L + A + IEKD R P L+ + PV GD + F W
Sbjct: 63 RA-LAQAGAEVTAIEKDLRLKPVLEETLEG--LPVRLVFGDALRF------------PWE 107
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWI 151
E PG ++ NLP++++T LI + +
Sbjct: 108 EVPPGSLLVANLPYHIATALITRLL 132
>gi|331006688|ref|ZP_08329965.1| Dimethyladenosine transferase [gamma proteobacterium IMCC1989]
gi|330419496|gb|EGG93885.1| Dimethyladenosine transferase [gamma proteobacterium IMCC1989]
Length = 274
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 13/132 (9%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
+ +A K+ QNFL + + ++IV + + + E+GPG G+IT+ ++ P +L +I
Sbjct: 7 FAHKARKRFGQNFLTDQNIINRIVTSINAKPSDRLVEIGPGQGAITQQLIQACP-QLQVI 65
Query: 81 EKDPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
E D P L LAQ + P H D + F + E + +RI+GNLP
Sbjct: 66 ELDRDLIPIL--LAQFAKYPEFAIHQQDALRFDFATLMVEKQ---------PLRIVGNLP 114
Query: 140 FNVSTPLIIKWI 151
+N+STPLI +
Sbjct: 115 YNISTPLIFHLL 126
>gi|118580905|ref|YP_902155.1| dimethyladenosine transferase [Pelobacter propionicus DSM 2379]
gi|118503615|gb|ABL00098.1| dimethyladenosine transferase [Pelobacter propionicus DSM 2379]
Length = 271
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 10/129 (7%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
R LK L QNFL + + ++I+R A ++V EVGPG G++T + L+ R ARL+L+E D
Sbjct: 6 RPLKSLGQNFLVDRNIVERIIRGAALEPDDQVLEVGPGRGALT-AHLSERVARLLLVEYD 64
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L + + V GD+++ ++ + ED + W +++ NLP+N+S
Sbjct: 65 HALADELSERYRENQ-RVRVIDGDILAVDLEALL-EDGDKRW-------KVVANLPYNIS 115
Query: 144 TPLIIKWIQ 152
T ++ ++++
Sbjct: 116 TQVLFRFLE 124
>gi|59710893|ref|YP_203669.1| dimethyladenosine transferase [Vibrio fischeri ES114]
gi|197334233|ref|YP_002155045.1| dimethyladenosine transferase [Vibrio fischeri MJ11]
gi|423685002|ref|ZP_17659810.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Vibrio fischeri SR5]
gi|62900449|sp|Q5E865.1|RSMA_VIBF1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226732638|sp|B5FGG5.1|RSMA_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|59478994|gb|AAW84781.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
[Vibrio fischeri ES114]
gi|197315723|gb|ACH65170.1| dimethyladenosine transferase [Vibrio fischeri MJ11]
gi|371496049|gb|EHN71643.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Vibrio fischeri SR5]
Length = 272
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 24/197 (12%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
S R+ + L +A K+ QNFL +P + D IV + G + E+GPG G+IT + R
Sbjct: 2 STRNDVHLGH-KARKRFGQNFLNDPYVIDGIVSAINPLPGQNLVEIGPGLGAITEPV-GR 59
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
+ +IE D L + + H GD M F + E+ + +
Sbjct: 60 EVDKFTVIELDRDLAERLRNHPELG-SKLTIHEGDAMRFDFTQLIKENNK---------L 109
Query: 133 RIIGNLPFNVSTPLIIKWIQAISENLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEF 191
RI GNLP+N+STPL+ LF HK Q + +L++ V + + +
Sbjct: 110 RIFGNLPYNISTPLMFH---------LFEFHKDVQDMHFMLQKEVVNRL--AAGPGTKAY 158
Query: 192 GQICLAYRDMCEEMPGL 208
G++ + + C+ MP L
Sbjct: 159 GRLTVMAQYFCKVMPVL 175
>gi|395236638|ref|ZP_10414806.1| dimethyladenosine transferase [Turicella otitidis ATCC 51513]
gi|423350463|ref|ZP_17328116.1| dimethyladenosine transferase [Turicella otitidis ATCC 51513]
gi|394488223|emb|CCI82894.1| dimethyladenosine transferase [Turicella otitidis ATCC 51513]
gi|404387531|gb|EJZ82643.1| dimethyladenosine transferase [Turicella otitidis ATCC 51513]
Length = 299
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 22/178 (12%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
IR++ L K+L QNF+ + +IV AG G+ V EVGPG GS+T ++L
Sbjct: 14 IRELADALGLNPTKRLGQNFVHDANTVRRIVAAAGVGEGDHVVEVGPGLGSLTLALLG-A 72
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVM--SFTMQNMFSEDRRRDWSEGLPG 131
R+ +E D R L A+A H L + + T+ ED
Sbjct: 73 VGRVTAVEIDTRLAELLPRTAEARAPRQHESLSVIRADALTLAPGDVEDP---------- 122
Query: 132 IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV---SLLERACVKPILRPYQL 186
++ NLP+NVS P++I ++ FP KR LV+ + ER P + Y +
Sbjct: 123 TALVANLPYNVSVPVLIHLLET------FPTIKRVLVMVQAEVAERLAATPGSKAYGV 174
>gi|372269006|ref|ZP_09505054.1| dimethyladenosine transferase [Alteromonas sp. S89]
Length = 272
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 15/134 (11%)
Query: 20 LYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVL 79
++ +A K+ QNFL + + ++IVR G +++ E+GPG G+IT ++++ P+ L
Sbjct: 4 FFQHKARKRFGQNFLVDENIIERIVRAIGPKDTDKLVEIGPGQGAITSLLIDKCPS-LTA 62
Query: 80 IEKDPRFTPCLDMLAQASPCPVHFHL--GDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN 137
+E D P L+ + P F + D + F +M E + +RI+GN
Sbjct: 63 VELDRDLIPMLEFKFRDYP---DFTIIEKDALKFDFGSMVEEGEQ---------LRIVGN 110
Query: 138 LPFNVSTPLIIKWI 151
LP+N+STPL+ +
Sbjct: 111 LPYNISTPLLFHLL 124
>gi|260773617|ref|ZP_05882533.1| dimethyladenosine transferase [Vibrio metschnikovii CIP 69.14]
gi|260612756|gb|EEX37959.1| dimethyladenosine transferase [Vibrio metschnikovii CIP 69.14]
Length = 271
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K+ QNFL +P + D IV + G + E+GPG G+IT + R + +IE D
Sbjct: 10 KARKRFGQNFLNDPYIIDGIVSAINPLPGQNLVEIGPGLGAITEPV-GREVDKFTVIELD 68
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L + S + H GD M F Q + + + +RI GNLP+N+S
Sbjct: 69 RDLAERLRNHPELS-SKLTIHEGDAMRFDFQQLVKPNNK---------LRIFGNLPYNIS 118
Query: 144 TPLIIKWIQAISE 156
TPL+ + E
Sbjct: 119 TPLMFHLFEFHKE 131
>gi|62900547|sp|Q72B41.1|RSMA_DESVH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|46449624|gb|AAS96274.1| dimethyladenosine transferase [Desulfovibrio vulgaris str.
Hildenborough]
Length = 266
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K L QNFL + + +I + V E+GPGPG++TR I PARL L+EKD
Sbjct: 4 RAKKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKD 63
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
+ + A L D + F + + D W ++IGNLP+NV+
Sbjct: 64 HHWAREHRLHPLAGTPEAQVVLTDALLFPWERL---DAAHPW-------KVIGNLPYNVA 113
Query: 144 TPLI 147
+PL+
Sbjct: 114 SPLM 117
>gi|304569709|ref|YP_011015.2| dimethyladenosine transferase [Desulfovibrio vulgaris str.
Hildenborough]
Length = 291
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K L QNFL + + +I + V E+GPGPG++TR I PARL L+EKD
Sbjct: 29 RAKKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKD 88
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
+ + A L D + F + + D W ++IGNLP+NV+
Sbjct: 89 HHWAREHRLHPLAGTPEAQVVLTDALLFPWERL---DAAHPW-------KVIGNLPYNVA 138
Query: 144 TPLI 147
+PL+
Sbjct: 139 SPLM 142
>gi|386392655|ref|ZP_10077436.1| dimethyladenosine transferase [Desulfovibrio sp. U5L]
gi|385733533|gb|EIG53731.1| dimethyladenosine transferase [Desulfovibrio sp. U5L]
Length = 289
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 18/126 (14%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
R + L QNFL +P +IV N G + V E+GPG G+++ IL P +++EKD
Sbjct: 31 RPKRSLGQNFLQDPNTAARIVANLGITPADTVIEIGPGRGALSGPILAAGPRAYLVVEKD 90
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS--EGLPGIRIIGNLPFN 141
LA+ P H L D + R DWS + L +++IGNLP+N
Sbjct: 91 RDLAA---RLAENHPG-AHVALADAL------------RLDWSRIDRLADVKLIGNLPYN 134
Query: 142 VSTPLI 147
+++PL+
Sbjct: 135 IASPLL 140
>gi|386286965|ref|ZP_10064145.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [gamma
proteobacterium BDW918]
gi|385280004|gb|EIF43936.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein [gamma
proteobacterium BDW918]
Length = 270
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL + + IVR + G + E+GPG G+IT +IL+ +L +IE D
Sbjct: 8 RARKRFGQNFLHDQGIIRGIVRAVSPLAGQRLLEIGPGQGAITATILD-TDCQLDVIEID 66
Query: 84 PRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
L D +S H GD + F + + G +R++GNLP+N+
Sbjct: 67 RDLVQILTDKF--SSRDNFRIHEGDALKFDIGAL----------AGTEKLRVVGNLPYNI 114
Query: 143 STPLIIKWIQA 153
STPLI + A
Sbjct: 115 STPLIFHLLSA 125
>gi|262277389|ref|ZP_06055182.1| dimethyladenosine transferase [alpha proteobacterium HIMB114]
gi|262224492|gb|EEY74951.1| dimethyladenosine transferase [alpha proteobacterium HIMB114]
Length = 255
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 19/130 (14%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP 84
A K+ QNFL L ++I++ I N + EVG G ++T I+N+ P + +E D
Sbjct: 2 AKKKFGQNFLINKNLCEEILK-YEKINNNNILEVGSGNLALTTKIINKNPKKFFSLEIDD 60
Query: 85 RFTPCLDMLAQASPCPV--HFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
D++ + + + + GD ++ ++F++D+ II NLPFN+
Sbjct: 61 ------DLIEKHKNSLISKYIYKGDALNINELDLFNKDK----------FSIISNLPFNI 104
Query: 143 STPLIIKWIQ 152
S+ L+IKW++
Sbjct: 105 SSKLLIKWLR 114
>gi|208778952|ref|ZP_03246298.1| dimethyladenosine transferase [Francisella novicida FTG]
gi|208744752|gb|EDZ91050.1| dimethyladenosine transferase [Francisella novicida FTG]
Length = 262
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
YK +A K L QNFL + + KIV+ A + V E+GPG G++TR +L+ + ++
Sbjct: 3 YKTKAKKSLGQNFLQDENIIRKIVQLANIKRHDIVIEIGPGLGALTRYLLS-SSNNVSVV 61
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D L Q P H + D + F + ++ + ++ I++IGNLP+
Sbjct: 62 EFDASVIDTLIANCQKYGTP-HIYNQDFLKFDISSLENSSNQK--------IKLIGNLPY 112
Query: 141 NVSTPLIIKWIQ 152
N+S+P++ K I+
Sbjct: 113 NISSPILFKVIK 124
>gi|416988358|ref|ZP_11938598.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Burkholderia sp. TJI49]
gi|325518852|gb|EGC98422.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Burkholderia sp. TJI49]
Length = 275
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 27/187 (14%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
A K+ QNFL + + D IV G G + E+GPG G++T ++ R P V
Sbjct: 12 ARKRFGQNFLVDHGVIDSIVSTIGPARGQRMVEIGPGLGALTEPLIERLATPESPLHAVE 71
Query: 80 IEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
+++D + L Q + H GD ++F +++ + P +RI+GNLP
Sbjct: 72 LDRD-----LIARLTQRFGALLELHAGDALAFDFRSLAAPG-------DAPSLRIVGNLP 119
Query: 140 FNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSVQEFGQICLAY 198
+N+S+PL+ + +++ +H L ++ER +P + + +LSV L Y
Sbjct: 120 YNISSPLLFHLM--TFADVVIDQHF-MLQNEVVERMVAEPGTKAFSRLSV------MLQY 170
Query: 199 RDMCEEM 205
R ++M
Sbjct: 171 RYAMDKM 177
>gi|134296900|ref|YP_001120635.1| dimethyladenosine transferase [Burkholderia vietnamiensis G4]
gi|166221657|sp|A4JHP7.1|RSMA_BURVG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|134140057|gb|ABO55800.1| dimethyladenosine transferase [Burkholderia vietnamiensis G4]
Length = 276
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 17/132 (12%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
A K+ QNFL + + D IV G + G + E+GPG G++T ++ R P V
Sbjct: 12 ARKRFGQNFLVDHGVIDSIVATIGPVRGQRMVEIGPGLGALTEPLIARVATPESPLHAVE 71
Query: 80 IEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
+++D + L Q + H GD ++F ++ + P +RI+GNLP
Sbjct: 72 LDRD-----LIGRLQQRFGALLELHAGDALAFDFGSLAAPGH-------APSLRIVGNLP 119
Query: 140 FNVSTPLIIKWI 151
+N+S+PL+ +
Sbjct: 120 YNISSPLLFHLM 131
>gi|239628929|ref|ZP_04671960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519075|gb|EEQ58941.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 288
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
+II+ Y+ K+ QNFL + + DKI+ AG + V E+GPG G++T+ L
Sbjct: 12 EIIQKYQFAFQKKFGQNFLIDTHVLDKIISAAGITKEDCVLEIGPGIGTMTQ-YLAEHAG 70
Query: 76 RLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII 135
R+V +E D P LD + V D++ + + E ++ G P I+++
Sbjct: 71 RVVAVEIDTNLLPILDETLKGYDN-VTVINNDILKLDINKLVDE-----YNGGRP-IKVV 123
Query: 136 GNLPFNVSTPLIIKWIQA 153
NLP+ ++TP+I+ +
Sbjct: 124 ANLPYYITTPIIMGLFEG 141
>gi|421868514|ref|ZP_16300162.1| Dimethyladenosine transferase [Burkholderia cenocepacia H111]
gi|358071536|emb|CCE51040.1| Dimethyladenosine transferase [Burkholderia cenocepacia H111]
Length = 275
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 27/187 (14%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
A K+ QNFL + + + IV G G + E+GPG G++T ++ R P V
Sbjct: 12 ARKRFGQNFLVDHGVINSIVATIGPARGQRMVEIGPGLGALTEPLIERLATPESPLHAVE 71
Query: 80 IEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
+++D + L Q + H GD ++F +++ + + P +RI+GNLP
Sbjct: 72 LDRD-----LIGRLQQRFGALLELHAGDALAFDFRSLAAPGDK-------PSLRIVGNLP 119
Query: 140 FNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSVQEFGQICLAY 198
+N+S+PL+ + + + +H L ++ER +P + + +LSV L Y
Sbjct: 120 YNISSPLLFHLM--TFADAVIDQHF-MLQNEVVERMVAEPGTKAFSRLSV------MLQY 170
Query: 199 RDMCEEM 205
R + E+M
Sbjct: 171 RYVMEKM 177
>gi|347731189|ref|ZP_08864290.1| ribosomal RNA adenine dimethylase family protein [Desulfovibrio sp.
A2]
gi|347520037|gb|EGY27181.1| ribosomal RNA adenine dimethylase family protein [Desulfovibrio sp.
A2]
Length = 228
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K L QNFL + + KIV + V E+GPGPG++TR I PA+L L+EKD
Sbjct: 85 RAKKSLGQNFLRDRNIAAKIVAALRIGPEDRVIEIGPGPGALTRHIHAAGPAQLFLLEKD 144
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
+ A P + L D + F + + WS ++IGNLP+NV+
Sbjct: 145 YHWATEHGRTRPAEPPVITPVLTDALCFPWERLTPA-----WS-----WKVIGNLPYNVA 194
Query: 144 TPLI 147
+PL+
Sbjct: 195 SPLM 198
>gi|118475813|ref|YP_892964.1| dimethyladenosine transferase [Bacillus thuringiensis str. Al
Hakam]
gi|196047365|ref|ZP_03114578.1| dimethyladenosine transferase [Bacillus cereus 03BB108]
gi|225862093|ref|YP_002747471.1| dimethyladenosine transferase [Bacillus cereus 03BB102]
gi|376264068|ref|YP_005116780.1| Dimethyladenosine transferase [Bacillus cereus F837/76]
gi|166221644|sp|A0R8B4.1|RSMA_BACAH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|254807859|sp|C1ESX0.1|RSMA_BACC3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|118415038|gb|ABK83457.1| dimethyladenosine transferase [Bacillus thuringiensis str. Al
Hakam]
gi|196021767|gb|EDX60461.1| dimethyladenosine transferase [Bacillus cereus 03BB108]
gi|225788520|gb|ACO28737.1| dimethyladenosine transferase [Bacillus cereus 03BB102]
gi|364509868|gb|AEW53267.1| Dimethyladenosine transferase [Bacillus cereus F837/76]
Length = 292
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI++ Y K L QNFL + + ++IV +A + + E+GPG G++T L +R
Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQ-LAKRA 69
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P LD LA V DV+ + +FSE + EG +
Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYGNVTVINK--DVLKADVHEVFSE----QFEEG-QDVM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP++ K ++
Sbjct: 123 VVANLPYYITTPILFKLLE 141
>gi|355678189|ref|ZP_09060868.1| ribosomal RNA small subunit methyltransferase A [Clostridium
citroniae WAL-17108]
gi|354812635|gb|EHE97250.1| ribosomal RNA small subunit methyltransferase A [Clostridium
citroniae WAL-17108]
Length = 288
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 8/138 (5%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
+II+ Y+ K+ QNFL + + DKI+ AG + V E+GPG G++T+ L
Sbjct: 12 EIIQKYQFAFQKRFGQNFLIDTHVLDKIISAAGITEQDCVLEIGPGIGTMTQ-YLAEHAR 70
Query: 76 RLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII 135
R+V +E D P LD + + D++ + + +E ++EG P ++++
Sbjct: 71 RVVAVEIDSNLLPILDETLKGY-TNITVINDDILKVDVGGLVNE-----YNEGRP-VKVV 123
Query: 136 GNLPFNVSTPLIIKWIQA 153
NLP+ ++TP+I+ ++
Sbjct: 124 ANLPYYITTPIIMGLFES 141
>gi|315127732|ref|YP_004069735.1| dimethyladenosine transferase [Pseudoalteromonas sp. SM9913]
gi|359438384|ref|ZP_09228410.1| ribosomal RNA small subunit methyltransferase A [Pseudoalteromonas
sp. BSi20311]
gi|359444228|ref|ZP_09234029.1| ribosomal RNA small subunit methyltransferase A [Pseudoalteromonas
sp. BSi20439]
gi|315016246|gb|ADT69584.1| dimethyladenosine transferase [Pseudoalteromonas sp. SM9913]
gi|358026926|dbj|GAA64659.1| ribosomal RNA small subunit methyltransferase A [Pseudoalteromonas
sp. BSi20311]
gi|358041929|dbj|GAA70278.1| ribosomal RNA small subunit methyltransferase A [Pseudoalteromonas
sp. BSi20439]
Length = 268
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFLF+ + DKIV + + E+GPG G+IT + + L ++E D
Sbjct: 10 RARKRFGQNFLFDESIIDKIVTAIDPKPQDNLVEIGPGLGAITEPVADLS-GHLTVVELD 68
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L P + + GD M F ++ +D++ +++ GNLP+N+S
Sbjct: 69 KDLAQRLIEHPFLGP-KLTVNQGDAMKFDFASLVKDDKK---------LKVFGNLPYNIS 118
Query: 144 TPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCE 203
TPL+ + F H + L + + + P + FG++ + + C
Sbjct: 119 TPLLFHLFE-------FADHIEHMHFMLQKEVVKRMVAGP---GSKTFGRLSVMTQYYCH 168
Query: 204 EMP 206
MP
Sbjct: 169 AMP 171
>gi|255311159|ref|ZP_05353729.1| dimethyladenosine transferase [Chlamydia trachomatis 6276]
gi|255317460|ref|ZP_05358706.1| dimethyladenosine transferase [Chlamydia trachomatis 6276s]
gi|440527947|emb|CCP53431.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis D/SotonD5]
gi|440532412|emb|CCP57922.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis G/SotonG1]
gi|440533305|emb|CCP58815.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis Ia/SotonIa1]
gi|440534199|emb|CCP59709.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis Ia/SotonIa3]
Length = 277
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 16/129 (12%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K LSQNFL + + KI+ A G+ V E+GPG G+++ +L+ + A ++ +EKD
Sbjct: 19 RAKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLS-QGANVIALEKD 77
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI-RIIGNLPFNV 142
P F L L P+ + D + + ++ ED+ G G RI+ NLP+++
Sbjct: 78 PMFEGSLSQL------PMDIEITDACKYPLTSL--EDK------GWKGKGRIVANLPYHI 123
Query: 143 STPLIIKWI 151
+TPL+ K+
Sbjct: 124 TTPLLTKFF 132
>gi|30260231|ref|NP_842608.1| dimethyladenosine transferase [Bacillus anthracis str. Ames]
gi|42779120|ref|NP_976367.1| dimethyladenosine transferase [Bacillus cereus ATCC 10987]
gi|47525294|ref|YP_016643.1| dimethyladenosine transferase [Bacillus anthracis str. 'Ames
Ancestor']
gi|47569890|ref|ZP_00240557.1| dimethyladenosine transferase [Bacillus cereus G9241]
gi|49183075|ref|YP_026327.1| dimethyladenosine transferase [Bacillus anthracis str. Sterne]
gi|49477600|ref|YP_034395.1| dimethyladenosine transferase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52145175|ref|YP_081654.1| dimethyladenosine transferase [Bacillus cereus E33L]
gi|65317501|ref|ZP_00390460.1| COG0030: Dimethyladenosine transferase (rRNA methylation) [Bacillus
anthracis str. A2012]
gi|165872549|ref|ZP_02217181.1| dimethyladenosine transferase [Bacillus anthracis str. A0488]
gi|167635072|ref|ZP_02393389.1| dimethyladenosine transferase [Bacillus anthracis str. A0442]
gi|167641541|ref|ZP_02399789.1| dimethyladenosine transferase [Bacillus anthracis str. A0193]
gi|170688890|ref|ZP_02880092.1| dimethyladenosine transferase [Bacillus anthracis str. A0465]
gi|170707547|ref|ZP_02898000.1| dimethyladenosine transferase [Bacillus anthracis str. A0389]
gi|177655321|ref|ZP_02936850.1| dimethyladenosine transferase [Bacillus anthracis str. A0174]
gi|190568974|ref|ZP_03021875.1| dimethyladenosine transferase [Bacillus anthracis str.
Tsiankovskii-I]
gi|196036349|ref|ZP_03103746.1| dimethyladenosine transferase [Bacillus cereus W]
gi|196041767|ref|ZP_03109057.1| dimethyladenosine transferase [Bacillus cereus NVH0597-99]
gi|206977937|ref|ZP_03238824.1| dimethyladenosine transferase [Bacillus cereus H3081.97]
gi|217957617|ref|YP_002336159.1| dimethyladenosine transferase [Bacillus cereus AH187]
gi|218901242|ref|YP_002449076.1| dimethyladenosine transferase [Bacillus cereus AH820]
gi|222093811|ref|YP_002527860.1| dimethyladenosine transferase [Bacillus cereus Q1]
gi|227812714|ref|YP_002812723.1| dimethyladenosine transferase [Bacillus anthracis str. CDC 684]
gi|229601390|ref|YP_002864692.1| dimethyladenosine transferase [Bacillus anthracis str. A0248]
gi|254682332|ref|ZP_05146193.1| dimethyladenosine transferase [Bacillus anthracis str. CNEVA-9066]
gi|254724182|ref|ZP_05185967.1| dimethyladenosine transferase [Bacillus anthracis str. A1055]
gi|254733577|ref|ZP_05191298.1| dimethyladenosine transferase [Bacillus anthracis str. Western
North America USA6153]
gi|254744655|ref|ZP_05202334.1| dimethyladenosine transferase [Bacillus anthracis str. Kruger B]
gi|254756360|ref|ZP_05208389.1| dimethyladenosine transferase [Bacillus anthracis str. Vollum]
gi|254762416|ref|ZP_05214258.1| dimethyladenosine transferase [Bacillus anthracis str. Australia
94]
gi|300119136|ref|ZP_07056837.1| dimethyladenosine transferase [Bacillus cereus SJ1]
gi|301051777|ref|YP_003789988.1| dimethyladenosine transferase [Bacillus cereus biovar anthracis
str. CI]
gi|375282138|ref|YP_005102571.1| dimethyladenosine transferase [Bacillus cereus NC7401]
gi|384177947|ref|YP_005563709.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|386733909|ref|YP_006207090.1| Dimethyladenosine transferase [Bacillus anthracis str. H9401]
gi|402554372|ref|YP_006595643.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
cereus FRI-35]
gi|421510658|ref|ZP_15957547.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus anthracis str. UR-1]
gi|421640732|ref|ZP_16081310.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus anthracis str. BF1]
gi|423357815|ref|ZP_17335407.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
IS075]
gi|423374905|ref|ZP_17352242.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
AND1407]
gi|423554025|ref|ZP_17530351.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
ISP3191]
gi|423571992|ref|ZP_17548208.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
MSX-A12]
gi|423572816|ref|ZP_17548935.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
MSX-D12]
gi|423608134|ref|ZP_17584026.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD102]
gi|33516921|sp|Q81W00.1|RSMA_BACAN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|62900500|sp|Q63HJ1.1|RSMA_BACCZ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|62900530|sp|Q6HPX5.1|RSMA_BACHK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|62900550|sp|Q73FG7.1|RSMA_BACC1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226729752|sp|B7JK47.1|RSMA_BACC0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226729755|sp|B7HPV2.1|RSMA_BACC7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|254807857|sp|C3P9I6.1|RSMA_BACAA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|254807858|sp|C3LJ13.1|RSMA_BACAC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|254807860|sp|B9IZC4.1|RSMA_BACCQ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|30253552|gb|AAP24094.1| dimethyladenosine transferase [Bacillus anthracis str. Ames]
gi|42735035|gb|AAS38975.1| dimethyladenosine transferase [Bacillus cereus ATCC 10987]
gi|47500442|gb|AAT29118.1| dimethyladenosine transferase [Bacillus anthracis str. 'Ames
Ancestor']
gi|47553424|gb|EAL11808.1| dimethyladenosine transferase [Bacillus cereus G9241]
gi|49177002|gb|AAT52378.1| dimethyladenosine transferase [Bacillus anthracis str. Sterne]
gi|49329156|gb|AAT59802.1| dimethyladenosine transferase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51978644|gb|AAU20194.1| dimethyladenosine transferase [Bacillus cereus E33L]
gi|164711677|gb|EDR17222.1| dimethyladenosine transferase [Bacillus anthracis str. A0488]
gi|167510526|gb|EDR85924.1| dimethyladenosine transferase [Bacillus anthracis str. A0193]
gi|167529546|gb|EDR92296.1| dimethyladenosine transferase [Bacillus anthracis str. A0442]
gi|170127543|gb|EDS96417.1| dimethyladenosine transferase [Bacillus anthracis str. A0389]
gi|170667114|gb|EDT17875.1| dimethyladenosine transferase [Bacillus anthracis str. A0465]
gi|172080162|gb|EDT65255.1| dimethyladenosine transferase [Bacillus anthracis str. A0174]
gi|190559898|gb|EDV13882.1| dimethyladenosine transferase [Bacillus anthracis str.
Tsiankovskii-I]
gi|195990979|gb|EDX54950.1| dimethyladenosine transferase [Bacillus cereus W]
gi|196027387|gb|EDX66004.1| dimethyladenosine transferase [Bacillus cereus NVH0597-99]
gi|206743843|gb|EDZ55263.1| dimethyladenosine transferase [Bacillus cereus H3081.97]
gi|217065788|gb|ACJ80038.1| dimethyladenosine transferase [Bacillus cereus AH187]
gi|218538262|gb|ACK90660.1| dimethyladenosine transferase [Bacillus cereus AH820]
gi|221237858|gb|ACM10568.1| dimethyladenosine transferase [Bacillus cereus Q1]
gi|227006542|gb|ACP16285.1| dimethyladenosine transferase [Bacillus anthracis str. CDC 684]
gi|229265798|gb|ACQ47435.1| dimethyladenosine transferase [Bacillus anthracis str. A0248]
gi|298723458|gb|EFI64199.1| dimethyladenosine transferase [Bacillus cereus SJ1]
gi|300373946|gb|ADK02850.1| dimethyladenosine transferase [Bacillus cereus biovar anthracis
str. CI]
gi|324324031|gb|ADY19291.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus thuringiensis serovar finitimus YBT-020]
gi|358350659|dbj|BAL15831.1| dimethyladenosine transferase [Bacillus cereus NC7401]
gi|384383761|gb|AFH81422.1| Dimethyladenosine transferase [Bacillus anthracis str. H9401]
gi|401073996|gb|EJP82404.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
IS075]
gi|401093387|gb|EJQ01488.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
AND1407]
gi|401182106|gb|EJQ89248.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
ISP3191]
gi|401199126|gb|EJR06036.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
MSX-A12]
gi|401216740|gb|EJR23446.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
MSX-D12]
gi|401238631|gb|EJR45067.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD102]
gi|401795582|gb|AFQ09441.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus cereus FRI-35]
gi|401819279|gb|EJT18460.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus anthracis str. UR-1]
gi|403392111|gb|EJY89369.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus anthracis str. BF1]
Length = 292
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI++ Y K L QNFL + + ++IV +A + + E+GPG G++T L +R
Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQ-LAKRA 69
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P LD LA V DV+ + +FSE + EG +
Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYGNVTVINK--DVLKADVHEVFSE----QFEEG-QDVM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP++ K ++
Sbjct: 123 VVANLPYYITTPILFKLLE 141
>gi|397691054|ref|YP_006528308.1| dimethyladenosine transferase [Melioribacter roseus P3M]
gi|395812546|gb|AFN75295.1| dimethyladenosine transferase [Melioribacter roseus P3M]
Length = 265
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 79/144 (54%), Gaps = 17/144 (11%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
R LK+ QN+L + + +KI+ G G+++ E+GPG G++T IL +R L L+E D
Sbjct: 6 RPLKRFGQNYLKDKNIIEKIIEEFGVKEGDKIIEIGPGRGALT-EILYQRTDDLTLVEID 64
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
R ++ L + P + D + + + + D + +R+IGN+P+N++
Sbjct: 65 KR---VIETLKENFPNAKIIN-RDFLKLNLSELSAPDNK---------LRVIGNIPYNIT 111
Query: 144 TPLIIKWI---QAISENLLFPKHK 164
+P++ K I +++S+ LL +++
Sbjct: 112 SPILFKLIEERESVSDALLMVQYE 135
>gi|332534338|ref|ZP_08410181.1| dimethyladenosine transferase [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036248|gb|EGI72721.1| dimethyladenosine transferase [Pseudoalteromonas haloplanktis
ANT/505]
Length = 268
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFLF+ + DKIV + + E+GPG G+IT + + L ++E D
Sbjct: 10 RARKRFGQNFLFDESIIDKIVSAIDPKPEDNLVEIGPGLGAITEPVADLS-GHLTVVELD 68
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L P + + GD M+F ++ +D++ +++ GNLP+N+S
Sbjct: 69 KDLAQRLIEHPFLGP-KLTVNQGDAMTFDFASLVRDDKK---------LKVFGNLPYNIS 118
Query: 144 TPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCE 203
TPL+ + F H + L + + + P + FG++ + + C
Sbjct: 119 TPLLFHLFE-------FSDHIEHMHFMLQKEVVKRMVAGP---GSKTFGRLSVMTQYYCN 168
Query: 204 EMP 206
MP
Sbjct: 169 AMP 171
>gi|389578474|ref|ZP_10168501.1| dimethyladenosine transferase [Desulfobacter postgatei 2ac9]
gi|389400109|gb|EIM62331.1| dimethyladenosine transferase [Desulfobacter postgatei 2ac9]
Length = 283
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
+++K L A K+L QNFL P IV G V E+GPG G+IT L R
Sbjct: 6 ELLKKSGLYAGKELGQNFLSHPTTAQMIVEKTGVDKETTVLEIGPGLGAITLP-LARSCK 64
Query: 76 RLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
++V +EKD R P L + LA C V + Q++ D R G + +
Sbjct: 65 QVVAVEKDRRIIPLLEEELAGEGICNV--------TIINQDILKTDIREIA--GTEKLVV 114
Query: 135 IGNLPFNVSTPLIIKWI---QAISENLLFPKHKRQLVVSLLERACVKPILR 182
IGNLP+N+S+ ++ K + Q ++ L +++L LL A K R
Sbjct: 115 IGNLPYNISSQILFKLVTIRQVVTRAFLM--FQKELAQRLLSSAGTKDYSR 163
>gi|373859308|ref|ZP_09602038.1| dimethyladenosine transferase [Bacillus sp. 1NLA3E]
gi|372450977|gb|EHP24458.1| dimethyladenosine transferase [Bacillus sp. 1NLA3E]
Length = 293
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
RDI++ Y K L QNFL +P + +IV +A E+GPG G++T L R
Sbjct: 12 RDILEKYGFSFKKSLGQNFLIDPNILKRIVDHAEITEETGTIEIGPGIGALTEQ-LARSS 70
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
++V E D R P L+ H DV+ ++ + EDR D + + +
Sbjct: 71 KKVVAFEIDQRLLPILNETLDPYSNVEVIH-QDVLKADVKTVM-EDRLSDIKD----VMV 124
Query: 135 IGNLPFNVSTPLIIKWIQ 152
+ NLP+ V+TP+I+K ++
Sbjct: 125 VANLPYYVTTPIIMKLLE 142
>gi|313115046|ref|ZP_07800536.1| dimethyladenosine transferase [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310622608|gb|EFQ06073.1| dimethyladenosine transferase [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 287
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 12/140 (8%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
IR + + Y K QNF+ P L KIV +G V E+GPG G +TR L +R
Sbjct: 13 IRALCEKYDFALSKGFGQNFIINPGLPPKIVDASGVDKRYGVIEIGPGIGVLTRE-LAKR 71
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-- 131
A++V IE D R P +LA+ +F L +Q++ D + +E PG
Sbjct: 72 AAKVVSIEVDERLPP---LLAETMAGVDNFKL------VLQDVLKVDLKALIAEEFPGMP 122
Query: 132 IRIIGNLPFNVSTPLIIKWI 151
+ + NLP+ +++P+++K +
Sbjct: 123 VAVCANLPYYITSPIVMKLL 142
>gi|399522520|ref|ZP_10763183.1| dimethyladenosine transferase [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399109384|emb|CCH39744.1| dimethyladenosine transferase [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 269
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + D+I+R + E+GPG G+IT +L A+L +I
Sbjct: 4 YQHRARKRFGQNFLHDAGVIDRILRAIRAKEDERLLEIGPGQGAITEGLLG-SGAQLDVI 62
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L +P + GD + F + + R +R++GNLP+
Sbjct: 63 ELDLDLIPILQNKFGDNPR-FRLNQGDALKFDFARLDAPPR---------SLRVVGNLPY 112
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 113 NISTPLIFHLL 123
>gi|392307223|ref|ZP_10269757.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudoalteromonas citrea NCIMB 1889]
Length = 268
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL + + DKIV + + E+GPG G+IT +++ +L ++E D
Sbjct: 10 RARKRFGQNFLNDDMIIDKIVTAIDPKPADNLVEIGPGLGAITEPVVDLS-EKLTVVELD 68
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L P + H GD M F ++ + + ++I GNLP+NVS
Sbjct: 69 KDLAERLIKHPFMGP-KLTVHQGDAMKFDFASLIKDGEK---------LKIFGNLPYNVS 118
Query: 144 TPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCE 203
TPL+ + F H + L + + + P + FG++ + + C
Sbjct: 119 TPLLFHLFE-------FADHVEHMHFMLQKEVVKRMVASP---DSKAFGRLSVMTQYYCN 168
Query: 204 EMP 206
MP
Sbjct: 169 AMP 171
>gi|330813911|ref|YP_004358150.1| dimethyladenosine transferase [Candidatus Pelagibacter sp.
IMCC9063]
gi|327487006|gb|AEA81411.1| dimethyladenosine transferase [Candidatus Pelagibacter sp.
IMCC9063]
Length = 258
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K+ QNFL + D+I+ +A + V EVGPG G+++R I+ P + + +E D
Sbjct: 3 KKFGQNFLNNQTIIDQIITSANITKDSIVYEVGPGDGALSREIVKINPKKYLAVEIDKGL 62
Query: 87 TPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP 145
L D+ A+ ++ D + F ++FS++ + II NLP+N+S
Sbjct: 63 IQKLDDVFAKKEHWIIN---EDALQFDETSVFSKN-----------VTIISNLPYNISLK 108
Query: 146 LIIKWIQAISEN 157
L++KWI N
Sbjct: 109 LLLKWINQYITN 120
>gi|392556623|ref|ZP_10303760.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudoalteromonas undina NCIMB 2128]
Length = 268
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFLF+ + DKIV + + E+GPG G+IT + + L ++E D
Sbjct: 10 RARKRFGQNFLFDESIIDKIVTAIDPKPQDNLVEIGPGLGAITEPVADLS-GHLTVVELD 68
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L P + + GD M F ++ +D++ +++ GNLP+N+S
Sbjct: 69 KDLAQRLIEHPFLGP-KLTVNQGDAMKFDFASLVKDDKK---------LKVFGNLPYNIS 118
Query: 144 TPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCE 203
TPL+ + F H + L + + + P + FG++ + + C
Sbjct: 119 TPLLFHLFE-------FADHIEHMHFMLQKEVVKRMVAGP---GSKTFGRLSVMTQYYCN 168
Query: 204 EMP 206
MP
Sbjct: 169 AMP 171
>gi|381152828|ref|ZP_09864697.1| dimethyladenosine transferase [Methylomicrobium album BG8]
gi|380884800|gb|EIC30677.1| dimethyladenosine transferase [Methylomicrobium album BG8]
Length = 267
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 25/181 (13%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP 84
A K+ QNFL + + I+ +G E+GPG G++T +L + ARL +IE D
Sbjct: 5 ARKRFGQNFLHDSSVIRHIIACLDIRSGQHWVEIGPGQGALTEPLL-QAGARLDVIELDR 63
Query: 85 RFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST 144
L P + H D + F ++ + R +RI+GNLP+N+ST
Sbjct: 64 NLVALLKKKFAGRP-HLGIHSADALKFDFSSLAEQGER---------LRIVGNLPYNIST 113
Query: 145 PLIIKWIQAIS--ENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMC 202
PL+ + + E++ F L +++R C +P +++G++ + R C
Sbjct: 114 PLMFHLLNSADCIEDMHF-----MLQKEVVDRLCAEP-------GNKQYGRLSVMMRYYC 161
Query: 203 E 203
E
Sbjct: 162 E 162
>gi|354807516|ref|ZP_09040981.1| dimethyladenosine transferase [Lactobacillus curvatus CRL 705]
gi|354513970|gb|EHE85952.1| dimethyladenosine transferase [Lactobacillus curvatus CRL 705]
Length = 297
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 96/192 (50%), Gaps = 23/192 (11%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTIT-GNEVCEVGPGPGSITRSILNRR 73
R I+K Y + K L QNFL + +IV AG IT ++V E+GPG GS+T I R+
Sbjct: 11 RKILKRYGFKFKKSLGQNFLTNIAILKQIVE-AGDITKDDDVIEIGPGIGSLTEQIA-RK 68
Query: 74 PARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG- 131
+++ E D R P L D L H+H +++ Q++ D + +E G
Sbjct: 69 AHQVLSFEIDERLMPVLKDTLN-------HYHNVTILN---QDILEADLKTIIAEQFDGK 118
Query: 132 --IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QL 186
++I+ NLP+ ++TP+++ ++A L + + + ER +P + Y +
Sbjct: 119 HNLKIVANLPYYITTPIMLHLLEA---GLPIDRMVLMMQKEVAERINAEPGSKAYGSLSI 175
Query: 187 SVQEFGQICLAY 198
+VQ ++ LA+
Sbjct: 176 AVQLHSEVNLAF 187
>gi|116871577|ref|YP_848358.1| dimethyladenosine transferase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123458009|sp|A0AEZ3.1|RSMA_LISW6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|116740455|emb|CAK19575.1| dimethyladenosine transferase [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 295
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
+I+K Y K L QNFL + + +I AG V E+GPG G++T L +
Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAGISKETNVIEIGPGIGALTEQ-LAKTAN 71
Query: 76 RLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII 135
+V E D R P LD A H GDV+ ++ + ++ +S+ ++I+
Sbjct: 72 EVVAFEIDQRLLPILDDTLSAYNNIQVVH-GDVLKADVEEVITQ----QFSKSELPLKIV 126
Query: 136 GNLPFNVSTPLIIKWIQ 152
NLP+ V+TP+I+K +
Sbjct: 127 ANLPYYVTTPIILKLLH 143
>gi|387153363|ref|YP_005702299.1| dimethyladenosine transferase [Desulfovibrio vulgaris RCH1]
gi|311233807|gb|ADP86661.1| dimethyladenosine transferase [Desulfovibrio vulgaris RCH1]
Length = 300
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K L QNFL + + +I + V E+GPGPG++TR I PARL L+EKD
Sbjct: 38 RAKKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKD 97
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
+ + A L D + F + + D W ++IGNLP+NV+
Sbjct: 98 HHWAREHRLHPLAGTPEAQVVLTDALLFPWERL---DAAHPW-------KVIGNLPYNVA 147
Query: 144 TPLI 147
+PL+
Sbjct: 148 SPLM 151
>gi|347751682|ref|YP_004859247.1| ribosomal RNA small subunit methyltransferase A [Bacillus coagulans
36D1]
gi|347584200|gb|AEP00467.1| Ribosomal RNA small subunit methyltransferase A [Bacillus coagulans
36D1]
Length = 295
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 11/142 (7%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+ I+ Y K L QNFL +P + I A + V E+GPG G++T L RR
Sbjct: 12 KAILNRYGFSFKKSLGQNFLIDPNILRNITDTADLTEESGVVEIGPGIGALTEH-LARRS 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
++V E D R P L D LA P P V+ DV+ + + + G+ I
Sbjct: 71 KKVVAFEIDKRLAPILKDTLA---PYPNVNVIYEDVLKADVGKVLETE-----FAGINDI 122
Query: 133 RIIGNLPFNVSTPLIIKWIQAI 154
++ NLP+ V+TP+I+K++ +
Sbjct: 123 MVVANLPYYVTTPIILKFVTGL 144
>gi|169825672|ref|YP_001695830.1| dimethyladenosine transferase [Lysinibacillus sphaericus C3-41]
gi|226732594|sp|B1HS82.1|RSMA_LYSSC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|168990160|gb|ACA37700.1| Dimethyladenosine transferase [Lysinibacillus sphaericus C3-41]
Length = 293
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL +P + IV +A + EVGPG G++T L R
Sbjct: 12 QEILKKYGFSFKKSLGQNFLIDPNILRNIVSHAKLTENSGAIEVGPGIGALTEH-LARSA 70
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR- 133
++V E D R P L+ SP + +S ++ D + +E +PGI
Sbjct: 71 KKVVSFEIDQRLLPVLE--DTLSPY-------NNVSIVHSDILKADVAKVIAEEMPGIED 121
Query: 134 --IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ V+TP+++K +
Sbjct: 122 IMVVANLPYYVTTPILMKLLN 142
>gi|404482670|ref|ZP_11017895.1| dimethyladenosine transferase [Clostridiales bacterium OBRC5-5]
gi|404343760|gb|EJZ70119.1| dimethyladenosine transferase [Clostridiales bacterium OBRC5-5]
Length = 292
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
+IIK Y K+ QNFL + + DKI + +G + E+GPG G++T+ + N A
Sbjct: 12 EIIKKYDFNFQKKFGQNFLIDTHVLDKICQASGLGKNDLAIEIGPGIGALTQYLANAAKA 71
Query: 76 RLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII 135
+V IE D P L+ A+ + D + ++ + E R++ IRI+
Sbjct: 72 -VVAIEIDKNLLPILNE-TLANYENISIINADFLKVDLEKLIEECRQKYGD--FENIRIV 127
Query: 136 GNLPFNVSTPLIIKWIQA 153
NLP+ ++TP+I+ +++
Sbjct: 128 ANLPYYITTPIIMNVLES 145
>gi|330444319|ref|YP_004377305.1| dimethyladenosine transferase [Chlamydophila pecorum E58]
gi|328807429|gb|AEB41602.1| dimethyladenosine transferase [Chlamydophila pecorum E58]
Length = 280
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 13/123 (10%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K LSQNFL + + KI+ + G V E+GPG G++T +++ A ++ +EKDP+F
Sbjct: 24 KGLSQNFLIDGNIIRKILSESQVQEGEWVLEIGPGFGALTEGLVS-SGAHVIALEKDPKF 82
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
L L + H + D ++ +Q + W EG R+I NLP++++TPL
Sbjct: 83 ATTLSELPLS-----HLEITDARTYPLQKL----SELGW-EG--KGRMIANLPYHITTPL 130
Query: 147 IIK 149
+IK
Sbjct: 131 LIK 133
>gi|344338306|ref|ZP_08769238.1| Ribosomal RNA small subunit methyltransferase A [Thiocapsa marina
5811]
gi|343801588|gb|EGV19530.1| Ribosomal RNA small subunit methyltransferase A [Thiocapsa marina
5811]
Length = 264
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL + ++ D+I G V E+GPG G+IT +L L ++E D
Sbjct: 4 RARKRFGQNFLHDRQVIDRIHGAIAATPGERVVEIGPGQGAITEGLLT-AVGSLDVVELD 62
Query: 84 PRFT-PCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
P D L + H D +SF + + E R +R++GNLP+N+
Sbjct: 63 RDLVGPLRDRLGALG--ALRIHQADALSFDLCALPDEGER---------LRLVGNLPYNI 111
Query: 143 STPLIIKWIQ 152
STPL+ ++++
Sbjct: 112 STPLLFRFLE 121
>gi|56476032|ref|YP_157621.1| dimethyladenosine transferase [Aromatoleum aromaticum EbN1]
gi|62900475|sp|Q5P7J1.1|RSMA_AROAE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|56312075|emb|CAI06720.1| dimethyladenosine transferase [Aromatoleum aromaticum EbN1]
Length = 265
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 27/178 (15%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL +P + KI+ + G V E+GPG G++T ++ R L ++E D
Sbjct: 5 RARKRFGQNFLSDPNIIRKIIDAIHPVPGETVVEIGPGLGAMTDPLVERL-GHLHVVEID 63
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L + SP + H GD + F + G P +R++GNLP+N+S
Sbjct: 64 RDLIARLH--ERYSPERLTIHEGDALKFDFATL-----------GAP-LRVVGNLPYNIS 109
Query: 144 TPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ--ICLAYR 199
TPL+ + F R + L + ++ + P +++G+ + L YR
Sbjct: 110 TPLLFHLAE-------FAARVRDMTFMLQKEVVMRMVAEP---GTEDYGRLSVMLQYR 157
>gi|288941310|ref|YP_003443550.1| dimethyladenosine transferase [Allochromatium vinosum DSM 180]
gi|288896682|gb|ADC62518.1| dimethyladenosine transferase [Allochromatium vinosum DSM 180]
Length = 263
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 13/129 (10%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL +P + D+I G + E+GPG G+IT+ +L R A L +IE D
Sbjct: 4 RARKRFGQNFLHDPLVIDRIHAAIDARPGERLVEIGPGQGAITQGLLTRAGA-LDVIELD 62
Query: 84 PRFT-PCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
P L +H D + F ++ + SEG +R++GNLP+N+
Sbjct: 63 RDLIEPLRQRLGGLGELRIHN--ADALDFDLRTLAD-------SEGT--LRLVGNLPYNI 111
Query: 143 STPLIIKWI 151
STPL+ ++
Sbjct: 112 STPLLFHFL 120
>gi|323140326|ref|ZP_08075258.1| dimethyladenosine transferase [Phascolarctobacterium succinatutens
YIT 12067]
gi|322415184|gb|EFY05971.1| dimethyladenosine transferase [Phascolarctobacterium succinatutens
YIT 12067]
Length = 283
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 18/185 (9%)
Query: 17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPAR 76
I+ +KLRA K+L QNFL + + +IV A ++V EVGPG G++T+ L A
Sbjct: 15 ILHRFKLRADKKLGQNFLIDENIVRRIVEAAELSPADKVLEVGPGIGTLTQG-LAESGAD 73
Query: 77 LVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIG 136
+V +E D R P LD+ + V GD++ + + P ++
Sbjct: 74 VVAVELDKRLLPVLDVTLEGYDN-VRIVNGDILQVNIMETVAA----------PEFKVCA 122
Query: 137 NLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQEFGQ 193
NLP+ ++TP+I ++ + L + + + ER KP R Y +++Q + +
Sbjct: 123 NLPYYITTPIIFALLE---KRLPMERLVAMVQKEVAERMAAKPGSRDYGALSVAIQYYTE 179
Query: 194 ICLAY 198
+A+
Sbjct: 180 PEIAF 184
>gi|403387590|ref|ZP_10929647.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium sp. JC122]
Length = 283
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 21/191 (10%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
+ +DI+ Y + K L QNFL + + + IV A + + E+GPG G++T +L+
Sbjct: 5 TTKDIVNKYDFKFAKSLGQNFLTDDTVLEDIVSGAAVCKDDYIIEIGPGVGTLTVELLD- 63
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
R R+ IE D R P L + H D + + + +++ +
Sbjct: 64 RAKRVTSIELDDRLIPILTEELKDYETFNLIH-KDALKVNYKELIGDEK---------SV 113
Query: 133 RIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFG 192
+++ NLP+ V+TP+I NLL ++ + + ++++ + I Q S +++G
Sbjct: 114 KVVANLPYYVTTPII--------ANLLNGEYNFKSLTIMIQKEVAERI--DAQPSTKDYG 163
Query: 193 QICLAYRDMCE 203
L + C+
Sbjct: 164 AFSLLVQYYCD 174
>gi|299820686|ref|ZP_07052575.1| dimethyladenosine transferase [Listeria grayi DSM 20601]
gi|299817707|gb|EFI84942.1| dimethyladenosine transferase [Listeria grayi DSM 20601]
Length = 295
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 8/138 (5%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
+I+K Y K L QNFL + + +I AG + E+GPG G++T L R
Sbjct: 13 EILKKYHFLFKKSLGQNFLIDSNILKRIAETAGLNAESNAMEIGPGIGALTEH-LARNAK 71
Query: 76 RLVLIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
+V E D R P LD SP P V DV+ ++ +E ++S+ +++
Sbjct: 72 EVVAFEIDQRLIPILD--DTLSPYPNVKIIHQDVLKADVRAALTE----NFSDPEAPLKV 125
Query: 135 IGNLPFNVSTPLIIKWIQ 152
+ NLP+ V+TP+I+K +
Sbjct: 126 VANLPYYVTTPIILKLLH 143
>gi|387903212|ref|YP_006333551.1| dimethyladenosine transferase [Burkholderia sp. KJ006]
gi|387578104|gb|AFJ86820.1| Dimethyladenosine transferase [Burkholderia sp. KJ006]
Length = 276
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 17/132 (12%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
A K+ QNFL + + D IV G + G + E+GPG G++T ++ R P V
Sbjct: 12 ARKRFGQNFLVDHGVIDSIVATIGPVRGQRMVEIGPGLGALTEPLIARVATPESPLHAVE 71
Query: 80 IEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
+++D + L Q + H GD ++F ++ + P +RI+GNLP
Sbjct: 72 LDRD-----LIGRLQQRFGALLELHAGDALAFDFGSLAAPG-------DAPSLRIVGNLP 119
Query: 140 FNVSTPLIIKWI 151
+N+S+PL+ +
Sbjct: 120 YNISSPLLFHLM 131
>gi|357633055|ref|ZP_09130933.1| dimethyladenosine transferase [Desulfovibrio sp. FW1012B]
gi|357581609|gb|EHJ46942.1| dimethyladenosine transferase [Desulfovibrio sp. FW1012B]
Length = 289
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 18/126 (14%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
R + L QNFL +P +IV N G + V E+GPG G+++ IL+ P +++EKD
Sbjct: 31 RPKRSLGQNFLQDPNTAARIVANLGITPADTVIEIGPGRGALSGHILDAGPRAYLVVEKD 90
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS--EGLPGIRIIGNLPFN 141
L AS + L D + R DWS + L +++IGNLP+N
Sbjct: 91 RDLAARL----AASHPGANVALADAL------------RLDWSRIDRLADVKLIGNLPYN 134
Query: 142 VSTPLI 147
+++PL+
Sbjct: 135 IASPLL 140
>gi|433460538|ref|ZP_20418167.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Halobacillus sp. BAB-2008]
gi|432191380|gb|ELK48338.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Halobacillus sp. BAB-2008]
Length = 289
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
M KA+ P ++I+K Y K L QNFL + + I+ AG E+GP
Sbjct: 1 MNNKAIATPT--RTKEILKNYGFSFKKSLGQNFLIDVNILTNIIAEAGIDDTTAAIEIGP 58
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSE 119
G G++T L R ++V E D R P L + L++ + VH D++ + M E
Sbjct: 59 GIGALTEQ-LARHADKVVAFEIDQRLLPILGETLSEYN--NVHIINEDILKADVAGMIDE 115
Query: 120 DRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWI 151
+ EG IR++ NLP+ ++TP+++K +
Sbjct: 116 ----HFEEG-QKIRVVANLPYYITTPILMKLL 142
>gi|15835248|ref|NP_297007.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
gi|270285420|ref|ZP_06194814.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
gi|270289434|ref|ZP_06195736.1| dimethyladenosine transferase [Chlamydia muridarum Weiss]
gi|301336817|ref|ZP_07225019.1| dimethyladenosine transferase [Chlamydia muridarum MopnTet14]
gi|27151610|sp|Q9PK40.1|RSMA_CHLMU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|7190672|gb|AAF39462.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
Length = 277
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 16/129 (12%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K LSQNFL + + KI+ A G+ V E+GPG G+++ +L + A ++ +EKD
Sbjct: 19 RAKKALSQNFLVDGNILRKILATADVQPGDWVLEIGPGFGALSE-VLVSQGANVIALEKD 77
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI-RIIGNLPFNV 142
P F L L P+ + D + + ++ +D+ G G RI+ NLP+++
Sbjct: 78 PMFEESLSQL------PIDIEITDACKYPLASL--DDK------GWKGKGRIVANLPYHI 123
Query: 143 STPLIIKWI 151
+TPL+ K+
Sbjct: 124 TTPLLTKFF 132
>gi|330448803|ref|ZP_08312450.1| dimethyladenosine transferase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492994|dbj|GAA06947.1| dimethyladenosine transferase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 274
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL +P + D IV + G + E+GPG G+IT + + + +IE D
Sbjct: 11 RARKRFGQNFLNDPYIIDGIVSAINPLPGQNLVEIGPGLGAITEQV-GKLVDKFTVIELD 69
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L+ + + H GD M F + E+ + +RI GNLP+N+S
Sbjct: 70 RDLAERLENHPDLA-SKLTIHQGDAMRFDFTQLIKENNK---------LRIFGNLPYNIS 119
Query: 144 TPLII 148
TPL+
Sbjct: 120 TPLMF 124
>gi|164688862|ref|ZP_02212890.1| hypothetical protein CLOBAR_02510 [Clostridium bartlettii DSM
16795]
gi|164602066|gb|EDQ95531.1| dimethyladenosine transferase [Clostridium bartlettii DSM 16795]
Length = 288
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 96/198 (48%), Gaps = 20/198 (10%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RL + ++++ + + K L QNFL + + D+I+ A + + EVGPG G++T
Sbjct: 3 RLSSHRATKEVVNKHNFKFSKSLGQNFLIDDNVIDRILEGARLSETDRIIEVGPGIGTLT 62
Query: 67 RSILNRRPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
R + + +V IE D P L + LA V D++ +Q + +E
Sbjct: 63 RE-MGKVAENVVAIEIDKTLIPILKETLADLDNVEVVNE--DILKVDVQGLINEKLN--- 116
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQ 185
G P ++++ NLP+ ++TP+++K+++ E++ + + +R KP
Sbjct: 117 --GGP-VKLVANLPYYITTPIVMKFLE---EDIPVTDIVVMVQKEVADRMNAKP------ 164
Query: 186 LSVQEFGQICLAYRDMCE 203
S +++G + +A + C+
Sbjct: 165 -STKDYGALSVAVQYYCD 181
>gi|410656895|ref|YP_006909266.1| Dimethyladenosine transferase [Dehalobacter sp. DCA]
gi|410659933|ref|YP_006912304.1| Dimethyladenosine transferase [Dehalobacter sp. CF]
gi|409019250|gb|AFV01281.1| Dimethyladenosine transferase [Dehalobacter sp. DCA]
gi|409022289|gb|AFV04319.1| Dimethyladenosine transferase [Dehalobacter sp. CF]
Length = 284
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 17/171 (9%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
IR +++ + +RA K L QNFL + + ++IVR + + E+GPGPG++TR + +
Sbjct: 13 IRRVVR-HGVRAKKSLGQNFLVDDSIIERIVREGMPLNDLPLVEIGPGPGALTRMLAPKF 71
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
P RL +E D L A P V H+ D + + N++ ++ + W
Sbjct: 72 P-RLWAVELDKEKVELLQRELNAYPF-VLLHM-DALKLKLANLWGQE--KGW-------- 118
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY 184
+IGNLP+ ++ PL++ ++ +E+LL Q V+ +R C P R Y
Sbjct: 119 LIGNLPYYITNPLLMHFLDQ-AESLLGMTIMVQKEVA--DRMCALPGGRDY 166
>gi|430751838|ref|YP_007214746.1| dimethyladenosine transferase [Thermobacillus composti KWC4]
gi|430735803|gb|AGA59748.1| dimethyladenosine transferase [Thermobacillus composti KWC4]
Length = 300
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R+II Y K L QNFL + + KIV A E+GPG G++T L
Sbjct: 22 REIIARYGFTFRKALGQNFLVDANVLRKIVDAAELGPSKGALEIGPGIGALTEQ-LAMAA 80
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++ IE D R P L+ L +PC V GD + ++ + +E GL +
Sbjct: 81 GKVAAIELDRRLIPILEEL--FAPCANVEIVHGDALKLDLKQLIAE-----RFAGLERVS 133
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
++ NLP+ V+TP+++K + E+ L +H +V ++++ + + P +E+G
Sbjct: 134 VVANLPYYVTTPILMKLL----EDRLPLEH----IVVMVQKEVAERMTAPP--GGKEYGS 183
Query: 194 ICLAYRDMCE 203
+ +A R E
Sbjct: 184 LSVAVRYFAE 193
>gi|161611309|ref|YP_007394.2| dimethyladenosine transferase [Candidatus Protochlamydia
amoebophila UWE25]
gi|62900537|sp|Q6ME80.2|RSMA_PARUW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
Length = 284
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 72/126 (57%), Gaps = 9/126 (7%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K LSQNFL + + KIVR + GN V E+GPGPGS+T+++L A +V +EKD F
Sbjct: 22 KGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVE-AHVVAVEKD--F 78
Query: 87 TPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP 145
++ +P + D++ F+++ + R RD + ++I NLP++++TP
Sbjct: 79 VLARELKRFQTPSKQLEIFCEDILMFSVEEEL-QSRLRDDQKA----KVIANLPYHLTTP 133
Query: 146 LIIKWI 151
++ + +
Sbjct: 134 ILAEMV 139
>gi|384430500|ref|YP_005639860.1| ribosomal RNA small subunit methyltransferase A [Thermus
thermophilus SG0.5JP17-16]
gi|333965968|gb|AEG32733.1| Ribosomal RNA small subunit methyltransferase A [Thermus
thermophilus SG0.5JP17-16]
Length = 271
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
+L + S+R +++ + L A K+ QNFL +IV A TG V EVGPG G +T
Sbjct: 3 KLASLQSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAAKPFTG-PVFEVGPGLGVLT 61
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
R++L A + IEKD R P L+ P + F D + ++ W
Sbjct: 62 RALLEAG-AEVTAIEKDLRLRPVLEETLFGLPVRLVFQ--DALLYS------------WE 106
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQ 152
E G ++ NLP+N++TPL+ + ++
Sbjct: 107 EVPQGSLLVANLPYNIATPLVTRLLK 132
>gi|443469972|ref|ZP_21060110.1| Dimethyladenosine transferase [Pseudomonas pseudoalcaligenes KF707]
gi|442899491|gb|ELS25939.1| Dimethyladenosine transferase [Pseudomonas pseudoalcaligenes KF707]
Length = 268
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + +I+R+ G + E+GPG G++T +L A+L +I
Sbjct: 5 YQHRARKRFGQNFLHDAGIIHRILRSIHAREGERLLEIGPGQGALTEGLLA-SGAQLDVI 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L P + GD + F RR D + +R++GNLP+
Sbjct: 64 ELDLDLIPILTHRFGQLPN-FRLNQGDALKFDF-------RRLDAAPH--SLRVVGNLPY 113
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 114 NISTPLIFHLL 124
>gi|292492136|ref|YP_003527575.1| dimethyladenosine transferase [Nitrosococcus halophilus Nc4]
gi|291580731|gb|ADE15188.1| dimethyladenosine transferase [Nitrosococcus halophilus Nc4]
Length = 265
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 13/150 (8%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K+ Q+FL + ++ D++ R G + E+GPG G++T +L RR L IE D
Sbjct: 7 QARKRFGQHFLHDKQVIDRLHRVINPQPGELMVEIGPGQGALTLPLL-RRLGHLEAIELD 65
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L + AS +H H D ++F + + E +R +R++GNLP+NVS
Sbjct: 66 RDLAAYL-VENCASEGDLHLHNVDALTFDFRTLAREQNQR--------LRVVGNLPYNVS 116
Query: 144 TPLIIKWIQAIS--ENLLFPKHKRQLVVSL 171
TPL+ + + E++ F +R++VV L
Sbjct: 117 TPLLFHLLAQVEVLEDMHF-MLQREVVVRL 145
>gi|375306195|ref|ZP_09771496.1| dimethyladenosine transferase [Paenibacillus sp. Aloe-11]
gi|375081782|gb|EHS59989.1| dimethyladenosine transferase [Paenibacillus sp. Aloe-11]
Length = 294
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++II+ + K L QNFL + + +KIV AG E+GPG G++T L +
Sbjct: 14 KEIIQRHGFSFKKSLGQNFLIDQNILNKIVSAAGLDDTKGALEIGPGIGALTEK-LAQSA 72
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+ +E D R P L ++LA V GDV+ ++ +F+ D G+ +
Sbjct: 73 KVVTAVEIDQRLLPILEEVLAPYEHVKVRH--GDVLKLDLREVFASD-----FAGVSKVS 125
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ V+TP++++ ++
Sbjct: 126 VVANLPYYVTTPILMRLLE 144
>gi|92113048|ref|YP_572976.1| dimethyladenosine transferase [Chromohalobacter salexigens DSM
3043]
gi|119365016|sp|Q1QZ31.1|RSMA_CHRSD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|91796138|gb|ABE58277.1| dimethyladenosine transferase [Chromohalobacter salexigens DSM
3043]
Length = 282
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K+ QNFL + + D+IVR + + E+GPG G++T +L+ A L +IE D
Sbjct: 20 QARKRFGQNFLRDTGVIDRIVRVIAPRSDQRLIEIGPGQGALTEPLLDAVGA-LEVIELD 78
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L + P V H GD + F + +E + G P +R+IGNLP+N+S
Sbjct: 79 RDLIPGLRVQFFNYPDFV-IHEGDALQFDFAALAAEGE----TPGKP-LRVIGNLPYNIS 132
Query: 144 TPLIIKWIQA 153
TPLI + A
Sbjct: 133 TPLIFHLLTA 142
>gi|357589240|ref|ZP_09127906.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Corynebacterium nuruki S6-4]
Length = 312
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
IR + + K+L QNF+ +P +IV A + V EVGPG GS+T ++L +
Sbjct: 21 IRGLAAELDITPTKKLGQNFVLDPNTVRRIVTAADLTPDDHVIEVGPGLGSLTLALLE-Q 79
Query: 74 PARLVLIEKDPRFTPCL-DMLAQASPC---PVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129
+ +E DPR L +A+ +P VH D ++ T +M + GL
Sbjct: 80 AGDVTAVEIDPRLAERLPRTVAEFAPSRADDVHVVRHDALTLTAADMD--------AAGL 131
Query: 130 PG-IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERA 175
P ++ NLP+NVS P+++ ++ FP R LV+ LE A
Sbjct: 132 PAPTALVANLPYNVSVPVLLHLLEE------FPSITRVLVMVQLEVA 172
>gi|339442002|ref|YP_004708007.1| hypothetical protein CXIVA_09380 [Clostridium sp. SY8519]
gi|338901403|dbj|BAK46905.1| hypothetical protein CXIVA_09380 [Clostridium sp. SY8519]
Length = 293
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 10/140 (7%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R +I+ Y K+ QNFL + + ++IV AG + V E+GPG G++T+ + +
Sbjct: 17 RAVIERYGFTFQKKFGQNFLIDSNILEEIVEAAGITKTDYVLEIGPGIGTMTQYL--AQA 74
Query: 75 ARLVL-IEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
AR V +E D + P L+ + P H GD++ + + E + G P I+
Sbjct: 75 ARAVTAVEIDDKLIPILENTLEEFPNAEIIH-GDILKLDLNRLVEEK-----NNGNP-IK 127
Query: 134 IIGNLPFNVSTPLIIKWIQA 153
++ NLP+ ++TP+I++ ++
Sbjct: 128 VVANLPYYITTPIIMELFES 147
>gi|295694738|ref|YP_003587976.1| dimethyladenosine transferase [Kyrpidia tusciae DSM 2912]
gi|295410340|gb|ADG04832.1| dimethyladenosine transferase [Kyrpidia tusciae DSM 2912]
Length = 293
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 78/145 (53%), Gaps = 10/145 (6%)
Query: 9 PPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPGSITR 67
P +PS ++++ Y K L Q+FL + R+ ++IV A ++G E V E+GPG G++T
Sbjct: 6 PSVPSAAELLRRYAFHPKKSLGQHFLVDDRILERIV-AAADLSGREAVLEIGPGLGALTL 64
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
L + R++ +EKD P L + + V GDV+ + M E +
Sbjct: 65 R-LAQAAWRVLAVEKDRSLQPVLSEVLR-DFGNVQVCWGDVLEVDLPRMCEE------AF 116
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWIQ 152
G +R++ NLP+ V+TP+++K ++
Sbjct: 117 GPRTVRVVANLPYYVTTPVMMKLLE 141
>gi|359442657|ref|ZP_09232520.1| ribosomal RNA small subunit methyltransferase A [Pseudoalteromonas
sp. BSi20429]
gi|392536069|ref|ZP_10283206.1| dimethyladenosine transferase [Pseudoalteromonas arctica A 37-1-2]
gi|358035528|dbj|GAA68769.1| ribosomal RNA small subunit methyltransferase A [Pseudoalteromonas
sp. BSi20429]
Length = 268
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 21/183 (11%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFLF+ + DKIV + + E+GPG G+IT + L ++E D
Sbjct: 10 RARKRFGQNFLFDESIIDKIVSAIDPKPEDNLVEIGPGLGAITEPVA-ELSGHLTVVELD 68
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L P + + GD M+F ++ +D++ +++ GNLP+N+S
Sbjct: 69 KDLAQRLIEHPFLGP-KLTVNQGDAMTFDFASLVRDDKK---------LKVFGNLPYNIS 118
Query: 144 TPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCE 203
TPL+ + F H + L + + + P + FG++ + + C
Sbjct: 119 TPLLFHLFE-------FSDHIEHMHFMLQKEVVKRMVAGP---GSKTFGRLSVMTQYYCN 168
Query: 204 EMP 206
MP
Sbjct: 169 AMP 171
>gi|335043105|ref|ZP_08536132.1| dimethyladenosine transferase [Methylophaga aminisulfidivorans MP]
gi|333789719|gb|EGL55601.1| dimethyladenosine transferase [Methylophaga aminisulfidivorans MP]
Length = 266
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 29/184 (15%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL + + + I+ G + E+GPG G++T +L +R +L +IE D
Sbjct: 8 RARKRFGQNFLHDQSVINSIIEAISPEAGQHLVEIGPGRGALTEPLL-QRCTQLDVIELD 66
Query: 84 PRFTPCLDMLAQASPC-PVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
P L +Q S ++ H D + + + S + +RIIGNLP+N+
Sbjct: 67 RDLVPLLR--SQFSNYEQLNIHEADALRYDYYQLVSNHQ---------PLRIIGNLPYNI 115
Query: 143 STPL---IIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYR 199
+TPL ++ + Q I++ L ++ER C +P +++G++ + +
Sbjct: 116 TTPLLFHLLDYSQHITDMCFM------LQKEVVERICAQP-------GTKQYGRLSIMIQ 162
Query: 200 DMCE 203
CE
Sbjct: 163 HQCE 166
>gi|190570949|ref|YP_001975307.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019465|ref|ZP_03335271.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|226732639|sp|B3CPY6.1|RSMA_WOLPP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|190357221|emb|CAQ54639.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212994887|gb|EEB55529.1| dimethyladenosine transferase [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 264
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 11/134 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
+ L+ K L QNF+ + +IV AG++ V E+GPG G++TR IL P L+ I
Sbjct: 4 FLLKPKKSLGQNFILSNEIIKRIVALAGSLKDFNVIEIGPGYGALTREILAYNPKFLLSI 63
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
EKD + L D ++ + + +++I NLP+
Sbjct: 64 EKDSSLVKHHEQLLNEHQGKYRIIEADALNVVEKELVE-----------CPVKVIANLPY 112
Query: 141 NVSTPLIIKWIQAI 154
N+S L +KW+ I
Sbjct: 113 NISVALFLKWLNNI 126
>gi|430853691|ref|ZP_19471418.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1258]
gi|430540244|gb|ELA80454.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1258]
Length = 294
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K L QNFL EP + KIV A V EVGPG G++T L + ++V E D R
Sbjct: 26 KSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQ-LAKHAKQVVAFEIDDRL 84
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P L A + ++ V ++ S R + E LP ++++ NLP+ ++TP+
Sbjct: 85 IPVL-----ADTMQPYDNVTIVHQDILKTDLSTAVRETFHEELP-LKVVANLPYYITTPI 138
Query: 147 IIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQEFGQICLAY 198
++ ++++ +L+ + + + +R +P + Y ++VQ + + LA+
Sbjct: 139 MMHFLES---DLVVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEASLAF 190
>gi|381189867|ref|ZP_09897392.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Thermus sp. RL]
gi|380452444|gb|EIA40043.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Thermus sp. RL]
Length = 271
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
+L + S+R +++ + L A K+ QNFL +IV A TG V EVGPG G +T
Sbjct: 3 KLASLQSVRALLERHGLFADKRFGQNFLVSDAHLRRIVEAAKPFTG-PVFEVGPGLGVLT 61
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
R++L A + IEKD R P L+ P + F D + ++ W
Sbjct: 62 RALLEAG-AEVTAIEKDLRLRPVLEETLFGLPVRLVFQ--DALLYS------------WE 106
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQ 152
E G ++ NLP+N++TPL+ + ++
Sbjct: 107 EVPQGSLLVANLPYNIATPLVTRLLK 132
>gi|309812813|ref|ZP_07706551.1| dimethyladenosine transferase [Dermacoccus sp. Ellin185]
gi|308433230|gb|EFP57124.1| dimethyladenosine transferase [Dermacoccus sp. Ellin185]
Length = 297
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 16/162 (9%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
IR++ + + +R K QNF+ +P KIVR AG + V EVGPG GS+T ++L
Sbjct: 23 IRELAERHGVRPTKTWGQNFVIDPNTVRKIVRLAGVGADDTVVEVGPGLGSLTLALLPAV 82
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A L ++E DP L + P H +V+ + D E P
Sbjct: 83 -AHLSVVEVDPNLAAQLPATVERF-APQHASKLNVVQADAMTV-------DSLEPAP-TA 132
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERA 175
++ NLP+NVS P+++ +++ FP +R LV+ LE A
Sbjct: 133 LVANLPYNVSVPVVLNFLEH------FPSLQRVLVMVQLEVA 168
>gi|329947570|ref|ZP_08294729.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328523885|gb|EGF50965.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 367
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 26/152 (17%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R + + +R K L QNF+ + +IVR+AG + V E+GPG GS+T ++L
Sbjct: 72 VRGLSQALGIRPTKTLGQNFVHDAGTVRRIVRSAGVRPDDTVLEIGPGLGSLTLALLETG 131
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHL-----------GDVMSFTMQNMFSEDRR 122
AR+ +E DP +LA+A P V + D +S T + +
Sbjct: 132 -ARVSAVEIDP-------VLARALPVTVADRMPEAAGRLGVIEADALSITAEAL------ 177
Query: 123 RDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAI 154
+E P R++ NLP+NV+ P+++ ++A+
Sbjct: 178 -SGAEQPPPTRLVANLPYNVAVPVLLTVLEAL 208
>gi|308066864|ref|YP_003868469.1| dimethyladenosine transferase [Paenibacillus polymyxa E681]
gi|305856143|gb|ADM67931.1| Dimethyladenosine transferase [Paenibacillus polymyxa E681]
Length = 294
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DII+ + K L QNFL + + +KIV AG E+GPG G++T +
Sbjct: 14 KDIIQRHGFSFKKSLGQNFLIDQNILNKIVNAAGLDETKGALEIGPGIGALTEKLAQSAK 73
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A + +E D R P L ++LA V GDV+ ++ +F+ D D S+ +
Sbjct: 74 A-VTAVEIDQRLLPILEEVLAPYEHVKVRH--GDVLKLDLREVFAAD-FADVSK----VS 125
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ V+TP++++ ++
Sbjct: 126 VVANLPYYVTTPILMRLLE 144
>gi|404330868|ref|ZP_10971316.1| dimethyladenosine transferase [Sporolactobacillus vineae DSM 21990
= SL153]
Length = 294
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
I +I+ ++ K L QNFL + + IV+ A + V E+GPG GS+T+ L
Sbjct: 11 IHQVIRRHRFTLKKSLGQNFLADENILKNIVQAANLTRDSYVVEIGPGAGSLTQ-YLAEA 69
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V +E D R L+ Q V GDV+ + M +E+ D + +
Sbjct: 70 AGKVVAVEIDGRLKAILEETLQNYDNVV-VRFGDVLKMDLPKMIAEEFPADAA-----VT 123
Query: 134 IIGNLPFNVSTPLIIKWI 151
++ NLP+ V+TP+++K +
Sbjct: 124 VVANLPYYVTTPILLKLL 141
>gi|257880094|ref|ZP_05659747.1| dimethyladenosine transferase [Enterococcus faecium 1,230,933]
gi|257882326|ref|ZP_05661979.1| dimethyladenosine transferase [Enterococcus faecium 1,231,502]
gi|257885523|ref|ZP_05665176.1| dimethyladenosine transferase [Enterococcus faecium 1,231,501]
gi|257891185|ref|ZP_05670838.1| dimethyladenosine transferase [Enterococcus faecium 1,231,410]
gi|260560297|ref|ZP_05832473.1| dimethyladenosine transferase [Enterococcus faecium C68]
gi|293563099|ref|ZP_06677565.1| dimethyladenosine transferase [Enterococcus faecium E1162]
gi|293567525|ref|ZP_06678870.1| dimethyladenosine transferase [Enterococcus faecium E1071]
gi|294623379|ref|ZP_06702238.1| dimethyladenosine transferase [Enterococcus faecium U0317]
gi|314940231|ref|ZP_07847404.1| dimethyladenosine transferase [Enterococcus faecium TX0133a04]
gi|314941710|ref|ZP_07848589.1| dimethyladenosine transferase [Enterococcus faecium TX0133C]
gi|314947646|ref|ZP_07851055.1| dimethyladenosine transferase [Enterococcus faecium TX0082]
gi|314950632|ref|ZP_07853712.1| dimethyladenosine transferase [Enterococcus faecium TX0133A]
gi|314992501|ref|ZP_07857922.1| dimethyladenosine transferase [Enterococcus faecium TX0133B]
gi|314996345|ref|ZP_07861398.1| dimethyladenosine transferase [Enterococcus faecium TX0133a01]
gi|383329585|ref|YP_005355469.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium Aus0004]
gi|389869436|ref|YP_006376859.1| dimethyladenosine transferase [Enterococcus faecium DO]
gi|406579751|ref|ZP_11054979.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD4E]
gi|406582031|ref|ZP_11057164.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD3E]
gi|406584156|ref|ZP_11059192.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD2E]
gi|406589636|ref|ZP_11064066.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD1E]
gi|410936181|ref|ZP_11368050.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD5E]
gi|415899786|ref|ZP_11551688.1| dimethyladenosine transferase [Enterococcus faecium E4453]
gi|416129473|ref|ZP_11597315.1| dimethyladenosine transferase [Enterococcus faecium E4452]
gi|424792638|ref|ZP_18218851.1| dimethyladenosine transferase [Enterococcus faecium V689]
gi|424797797|ref|ZP_18223349.1| dimethyladenosine transferase [Enterococcus faecium S447]
gi|424826317|ref|ZP_18251227.1| dimethyladenosine transferase [Enterococcus faecium R501]
gi|424857847|ref|ZP_18281931.1| dimethyladenosine transferase [Enterococcus faecium R499]
gi|424868584|ref|ZP_18292326.1| dimethyladenosine transferase [Enterococcus faecium R497]
gi|424950886|ref|ZP_18366027.1| dimethyladenosine transferase [Enterococcus faecium R496]
gi|424955329|ref|ZP_18370171.1| dimethyladenosine transferase [Enterococcus faecium R494]
gi|424958791|ref|ZP_18373416.1| dimethyladenosine transferase [Enterococcus faecium R446]
gi|424961240|ref|ZP_18375695.1| dimethyladenosine transferase [Enterococcus faecium P1986]
gi|424964841|ref|ZP_18378903.1| dimethyladenosine transferase [Enterococcus faecium P1190]
gi|424967192|ref|ZP_18380900.1| dimethyladenosine transferase [Enterococcus faecium P1140]
gi|424971619|ref|ZP_18385046.1| dimethyladenosine transferase [Enterococcus faecium P1139]
gi|424973772|ref|ZP_18387037.1| dimethyladenosine transferase [Enterococcus faecium P1137]
gi|424977210|ref|ZP_18390242.1| dimethyladenosine transferase [Enterococcus faecium P1123]
gi|424981331|ref|ZP_18394067.1| dimethyladenosine transferase [Enterococcus faecium ERV99]
gi|424984071|ref|ZP_18396623.1| dimethyladenosine transferase [Enterococcus faecium ERV69]
gi|424989491|ref|ZP_18401755.1| dimethyladenosine transferase [Enterococcus faecium ERV38]
gi|424991190|ref|ZP_18403358.1| dimethyladenosine transferase [Enterococcus faecium ERV26]
gi|424994634|ref|ZP_18406565.1| dimethyladenosine transferase [Enterococcus faecium ERV168]
gi|424999349|ref|ZP_18410976.1| dimethyladenosine transferase [Enterococcus faecium ERV165]
gi|425000618|ref|ZP_18412174.1| dimethyladenosine transferase [Enterococcus faecium ERV161]
gi|425005034|ref|ZP_18416312.1| dimethyladenosine transferase [Enterococcus faecium ERV102]
gi|425008612|ref|ZP_18419682.1| dimethyladenosine transferase [Enterococcus faecium ERV1]
gi|425011953|ref|ZP_18422810.1| dimethyladenosine transferase [Enterococcus faecium E422]
gi|425013454|ref|ZP_18424184.1| dimethyladenosine transferase [Enterococcus faecium E417]
gi|425017052|ref|ZP_18427588.1| dimethyladenosine transferase [Enterococcus faecium C621]
gi|425020708|ref|ZP_18431003.1| dimethyladenosine transferase [Enterococcus faecium C497]
gi|425023743|ref|ZP_18433844.1| dimethyladenosine transferase [Enterococcus faecium C1904]
gi|425032859|ref|ZP_18437868.1| dimethyladenosine transferase [Enterococcus faecium 515]
gi|425035079|ref|ZP_18439931.1| dimethyladenosine transferase [Enterococcus faecium 514]
gi|425038908|ref|ZP_18443486.1| dimethyladenosine transferase [Enterococcus faecium 513]
gi|425042389|ref|ZP_18446729.1| dimethyladenosine transferase [Enterococcus faecium 511]
gi|425045798|ref|ZP_18449867.1| dimethyladenosine transferase [Enterococcus faecium 510]
gi|425049049|ref|ZP_18452925.1| dimethyladenosine transferase [Enterococcus faecium 509]
gi|425053266|ref|ZP_18456819.1| dimethyladenosine transferase [Enterococcus faecium 506]
gi|425061909|ref|ZP_18465104.1| dimethyladenosine transferase [Enterococcus faecium 503]
gi|427395584|ref|ZP_18888506.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
durans FB129-CNAB-4]
gi|430823892|ref|ZP_19442461.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0120]
gi|430832227|ref|ZP_19450274.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0333]
gi|430845022|ref|ZP_19462918.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1050]
gi|430847357|ref|ZP_19465196.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1133]
gi|430856532|ref|ZP_19474218.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1392]
gi|430863763|ref|ZP_19480208.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1573]
gi|430866973|ref|ZP_19482199.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1574]
gi|430962011|ref|ZP_19487294.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1576]
gi|431012223|ref|ZP_19490014.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1578]
gi|431238538|ref|ZP_19503407.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1622]
gi|431260006|ref|ZP_19505512.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1623]
gi|431381582|ref|ZP_19511184.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1627]
gi|431517039|ref|ZP_19516429.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1634]
gi|431550005|ref|ZP_19519318.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1731]
gi|431744653|ref|ZP_19533521.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2071]
gi|431749707|ref|ZP_19538444.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2297]
gi|431755639|ref|ZP_19544288.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2883]
gi|431771385|ref|ZP_19559769.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1644]
gi|431774182|ref|ZP_19562494.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2369]
gi|431777305|ref|ZP_19565559.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2560]
gi|431780009|ref|ZP_19568198.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E4389]
gi|431783088|ref|ZP_19571212.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E6012]
gi|431786549|ref|ZP_19574561.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E6045]
gi|447913526|ref|YP_007394938.1| Dimethyladenosine transferase [Enterococcus faecium NRRL B-2354]
gi|257814322|gb|EEV43080.1| dimethyladenosine transferase [Enterococcus faecium 1,230,933]
gi|257817984|gb|EEV45312.1| dimethyladenosine transferase [Enterococcus faecium 1,231,502]
gi|257821379|gb|EEV48509.1| dimethyladenosine transferase [Enterococcus faecium 1,231,501]
gi|257827545|gb|EEV54171.1| dimethyladenosine transferase [Enterococcus faecium 1,231,410]
gi|260073642|gb|EEW61968.1| dimethyladenosine transferase [Enterococcus faecium C68]
gi|291589768|gb|EFF21571.1| dimethyladenosine transferase [Enterococcus faecium E1071]
gi|291597226|gb|EFF28418.1| dimethyladenosine transferase [Enterococcus faecium U0317]
gi|291605013|gb|EFF34481.1| dimethyladenosine transferase [Enterococcus faecium E1162]
gi|313589488|gb|EFR68333.1| dimethyladenosine transferase [Enterococcus faecium TX0133a01]
gi|313592961|gb|EFR71806.1| dimethyladenosine transferase [Enterococcus faecium TX0133B]
gi|313597179|gb|EFR76024.1| dimethyladenosine transferase [Enterococcus faecium TX0133A]
gi|313599482|gb|EFR78325.1| dimethyladenosine transferase [Enterococcus faecium TX0133C]
gi|313640551|gb|EFS05131.1| dimethyladenosine transferase [Enterococcus faecium TX0133a04]
gi|313645887|gb|EFS10467.1| dimethyladenosine transferase [Enterococcus faecium TX0082]
gi|364089195|gb|EHM31908.1| dimethyladenosine transferase [Enterococcus faecium E4453]
gi|364094366|gb|EHM36551.1| dimethyladenosine transferase [Enterococcus faecium E4452]
gi|378939279|gb|AFC64351.1| Ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium Aus0004]
gi|388534685|gb|AFK59877.1| dimethyladenosine transferase [Enterococcus faecium DO]
gi|402917354|gb|EJX38145.1| dimethyladenosine transferase [Enterococcus faecium V689]
gi|402920262|gb|EJX40788.1| dimethyladenosine transferase [Enterococcus faecium S447]
gi|402924475|gb|EJX44684.1| dimethyladenosine transferase [Enterococcus faecium R501]
gi|402927843|gb|EJX47767.1| dimethyladenosine transferase [Enterococcus faecium R499]
gi|402932118|gb|EJX51651.1| dimethyladenosine transferase [Enterococcus faecium R496]
gi|402934396|gb|EJX53752.1| dimethyladenosine transferase [Enterococcus faecium R494]
gi|402936705|gb|EJX55865.1| dimethyladenosine transferase [Enterococcus faecium R497]
gi|402938941|gb|EJX57903.1| dimethyladenosine transferase [Enterococcus faecium R446]
gi|402944288|gb|EJX62713.1| dimethyladenosine transferase [Enterococcus faecium P1986]
gi|402945546|gb|EJX63886.1| dimethyladenosine transferase [Enterococcus faecium P1190]
gi|402954856|gb|EJX72438.1| dimethyladenosine transferase [Enterococcus faecium P1140]
gi|402957957|gb|EJX75314.1| dimethyladenosine transferase [Enterococcus faecium P1137]
gi|402958570|gb|EJX75877.1| dimethyladenosine transferase [Enterococcus faecium P1139]
gi|402963924|gb|EJX80761.1| dimethyladenosine transferase [Enterococcus faecium ERV99]
gi|402966725|gb|EJX83338.1| dimethyladenosine transferase [Enterococcus faecium P1123]
gi|402968605|gb|EJX85077.1| dimethyladenosine transferase [Enterococcus faecium ERV38]
gi|402969844|gb|EJX86225.1| dimethyladenosine transferase [Enterococcus faecium ERV69]
gi|402977472|gb|EJX93287.1| dimethyladenosine transferase [Enterococcus faecium ERV26]
gi|402979288|gb|EJX94964.1| dimethyladenosine transferase [Enterococcus faecium ERV165]
gi|402979501|gb|EJX95164.1| dimethyladenosine transferase [Enterococcus faecium ERV168]
gi|402987776|gb|EJY02819.1| dimethyladenosine transferase [Enterococcus faecium ERV102]
gi|402988811|gb|EJY03786.1| dimethyladenosine transferase [Enterococcus faecium ERV161]
gi|402992058|gb|EJY06791.1| dimethyladenosine transferase [Enterococcus faecium ERV1]
gi|402995063|gb|EJY09547.1| dimethyladenosine transferase [Enterococcus faecium E422]
gi|403001043|gb|EJY15124.1| dimethyladenosine transferase [Enterococcus faecium E417]
gi|403005692|gb|EJY19382.1| dimethyladenosine transferase [Enterococcus faecium C621]
gi|403008655|gb|EJY22149.1| dimethyladenosine transferase [Enterococcus faecium C497]
gi|403008889|gb|EJY22371.1| dimethyladenosine transferase [Enterococcus faecium C1904]
gi|403011746|gb|EJY25034.1| dimethyladenosine transferase [Enterococcus faecium 515]
gi|403018106|gb|EJY30813.1| dimethyladenosine transferase [Enterococcus faecium 513]
gi|403018875|gb|EJY31528.1| dimethyladenosine transferase [Enterococcus faecium 514]
gi|403023651|gb|EJY35889.1| dimethyladenosine transferase [Enterococcus faecium 511]
gi|403026237|gb|EJY38238.1| dimethyladenosine transferase [Enterococcus faecium 510]
gi|403029182|gb|EJY40952.1| dimethyladenosine transferase [Enterococcus faecium 509]
gi|403030971|gb|EJY42622.1| dimethyladenosine transferase [Enterococcus faecium 506]
gi|403040190|gb|EJY51286.1| dimethyladenosine transferase [Enterococcus faecium 503]
gi|404455082|gb|EKA01951.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD4E]
gi|404458693|gb|EKA05101.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD3E]
gi|404464549|gb|EKA10077.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD2E]
gi|404470539|gb|EKA15164.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD1E]
gi|410735422|gb|EKQ77334.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus sp. GMD5E]
gi|425723573|gb|EKU86460.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
durans FB129-CNAB-4]
gi|430441925|gb|ELA51996.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0120]
gi|430480218|gb|ELA57406.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0333]
gi|430495856|gb|ELA71976.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1050]
gi|430537300|gb|ELA77644.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1133]
gi|430544292|gb|ELA84330.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1392]
gi|430547823|gb|ELA87737.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1573]
gi|430551023|gb|ELA90793.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1574]
gi|430555921|gb|ELA95449.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1576]
gi|430559734|gb|ELA99058.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1578]
gi|430572239|gb|ELB11101.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1622]
gi|430576745|gb|ELB15370.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1623]
gi|430581944|gb|ELB20382.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1627]
gi|430585593|gb|ELB23872.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1634]
gi|430590693|gb|ELB28747.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1731]
gi|430605396|gb|ELB42801.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2071]
gi|430611294|gb|ELB48396.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2297]
gi|430616861|gb|ELB53756.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2883]
gi|430633449|gb|ELB69615.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1644]
gi|430634584|gb|ELB70702.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2369]
gi|430639417|gb|ELB75290.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E2560]
gi|430641090|gb|ELB76910.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E4389]
gi|430645442|gb|ELB80957.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E6045]
gi|430646110|gb|ELB81605.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E6012]
gi|445189235|gb|AGE30877.1| Dimethyladenosine transferase [Enterococcus faecium NRRL B-2354]
Length = 294
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K L QNFL EP + KIV A V EVGPG G++T L + ++V E D R
Sbjct: 26 KSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQ-LAKHAKQVVAFEIDDRL 84
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P L A + ++ V ++ S R + E LP ++++ NLP+ ++TP+
Sbjct: 85 IPVL-----ADTMQPYDNVTIVHQDILKTDLSTAVRETFHEELP-LKVVANLPYYITTPI 138
Query: 147 IIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQEFGQICLAY 198
++ ++++ +L+ + + + +R +P + Y ++VQ + + LA+
Sbjct: 139 MMHFLES---DLVVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEASLAF 190
>gi|299536734|ref|ZP_07050044.1| dimethyladenosine transferase [Lysinibacillus fusiformis ZC1]
gi|424740007|ref|ZP_18168419.1| dimethyladenosine transferase [Lysinibacillus fusiformis ZB2]
gi|298727848|gb|EFI68413.1| dimethyladenosine transferase [Lysinibacillus fusiformis ZC1]
gi|422946379|gb|EKU40790.1| dimethyladenosine transferase [Lysinibacillus fusiformis ZB2]
Length = 293
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL +P + IV +A + EVGPG G++T L R
Sbjct: 12 QEILKKYGFSFKKSLGQNFLIDPNILRNIVSHANLTENSGAIEVGPGIGALTEH-LARSA 70
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG--- 131
++V E D R P L+ SP + +S ++ D + ++ +PG
Sbjct: 71 KKVVSFEIDQRLLPVLE--DTLSPY-------NNVSIIHSDILKADVEKVIADEMPGIDD 121
Query: 132 IRIIGNLPFNVSTPLIIKWIQ 152
I ++ NLP+ V+TP+++K +
Sbjct: 122 IMVVANLPYYVTTPILLKLLN 142
>gi|430820541|ref|ZP_19439169.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0045]
gi|430826749|ref|ZP_19444922.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0164]
gi|430829333|ref|ZP_19447427.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0269]
gi|430925659|ref|ZP_19485414.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1575]
gi|431204849|ref|ZP_19500726.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1620]
gi|431765763|ref|ZP_19554265.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E4215]
gi|430439416|gb|ELA49768.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0045]
gi|430444690|gb|ELA54511.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0164]
gi|430480993|gb|ELA58160.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0269]
gi|430553709|gb|ELA93393.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1575]
gi|430571372|gb|ELB10288.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1620]
gi|430627613|gb|ELB64100.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E4215]
Length = 294
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K L QNFL EP + KIV A V EVGPG G++T L + ++V E D R
Sbjct: 26 KSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQ-LAKHAKQVVAFEIDDRL 84
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P L A + ++ V ++ S R + E LP ++++ NLP+ ++TP+
Sbjct: 85 IPVL-----ADTMQPYDNVTIVHQDILKTDLSTAVRETFHEELP-LKVVANLPYYITTPI 138
Query: 147 IIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQEFGQICLAY 198
++ ++++ +L+ + + + +R +P + Y ++VQ + + LA+
Sbjct: 139 MMHFLES---DLVVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEASLAF 190
>gi|417957707|ref|ZP_12600626.1| dimethyladenosine transferase [Neisseria weaveri ATCC 51223]
gi|343967771|gb|EGV36011.1| dimethyladenosine transferase [Neisseria weaveri ATCC 51223]
Length = 260
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 17/134 (12%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K+ QNFL + R+ IV +G+ V E+GPG +IT L +R +L ++E D
Sbjct: 6 KARKRFGQNFLQDTRIISDIVNAVRPQSGDTVIEIGPGLAAITEP-LAKRLDKLHVVEID 64
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI-RIIGNLPFNV 142
L L A + H GDV+ F ++ +PG+ +I+GNLP+N+
Sbjct: 65 RDIIKRLKTLPFAGKLEI--HEGDVLQFDFRS-------------VPGMKKIVGNLPYNI 109
Query: 143 STPLIIKWIQAISE 156
STPL+ + + E
Sbjct: 110 STPLLFRLSEVADE 123
>gi|315924856|ref|ZP_07921073.1| dimethyladenosine transferase [Pseudoramibacter alactolyticus ATCC
23263]
gi|315621755|gb|EFV01719.1| dimethyladenosine transferase [Pseudoramibacter alactolyticus ATCC
23263]
Length = 295
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 75/140 (53%), Gaps = 9/140 (6%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+ +++ ++L K+ QNFL + + DKI R + V E+GPG G++TR L+ R
Sbjct: 9 VEALMQRHELHFNKRFGQNFLIDDHILDKIARAGDLTPTDTVIEIGPGIGTLTRE-LSAR 67
Query: 74 PARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
+++ +E D + P L + LA VH DV+ + + +E + G +
Sbjct: 68 AGQVIAVEIDHKLIPALGETLADCG--NVHVVNADVLKTDLAALVAE-----AAPGTARL 120
Query: 133 RIIGNLPFNVSTPLIIKWIQ 152
+++ NLP+ ++TP++++ ++
Sbjct: 121 KVVANLPYYITTPIMMQLLE 140
>gi|212637885|ref|YP_002314405.1| dimethyladenosine transferase [Anoxybacillus flavithermus WK1]
gi|226729751|sp|B7GFH0.1|RSMA_ANOFW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|212559365|gb|ACJ32420.1| Dimethyladenosine transferase (rRNA methylation) [Anoxybacillus
flavithermus WK1]
Length = 295
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I++ Y K L QNFL EP + +IV A V E+GPG G++T L RR
Sbjct: 12 KEILEKYGFSFKKSLGQNFLIEPNILHRIVDFAQLSERTGVIEIGPGIGALTEQ-LARRA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ + + D++ +Q + +E + I
Sbjct: 71 KKVVAFEIDQRLLPILADTLSPYTNVSIIHE--DILKADVQQVIAE-----QFTDVDDIM 123
Query: 134 IIGNLPFNVSTPLIIKWI 151
++ NLP+ V+TP+I+K +
Sbjct: 124 VVANLPYYVTTPIIMKLL 141
>gi|94499972|ref|ZP_01306507.1| dimethyladenosine transferase [Bermanella marisrubri]
gi|94427830|gb|EAT12805.1| dimethyladenosine transferase [Oceanobacter sp. RED65]
Length = 266
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K+ QNFL +P + IV++ G+ + E+GPG G+IT +L+ L ++E D
Sbjct: 4 QARKRFGQNFLHDPNVIRNIVKSIRPKVGDRIVEIGPGMGAITEELLDATEGELDVVELD 63
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L + + H D + F + + +RI+GNLP+N+S
Sbjct: 64 RDLIPGLK-VKFFNHKGFRIHESDALKFDFATLKQAPEEQ--------LRIVGNLPYNIS 114
Query: 144 TPLIIKWI 151
TPLI +
Sbjct: 115 TPLIFHLL 122
>gi|212702270|ref|ZP_03310398.1| hypothetical protein DESPIG_00281 [Desulfovibrio piger ATCC 29098]
gi|212674333|gb|EEB34816.1| putative dimethyladenosine transferase [Desulfovibrio piger ATCC
29098]
Length = 272
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 17/126 (13%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K L Q+FL + ++I + V E+GPGPG++TR+I + ARLVL+EKD
Sbjct: 8 KAKKSLGQHFLRHESICNRIASLLLPKDTDNVIEIGPGPGALTRAIEAQPHARLVLLEKD 67
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG--IRIIGNLPFN 141
+ L A Q + ++ R DWS P +IIGNLP+N
Sbjct: 68 SHWAAERQRLGSAR---------------TQAVLTDALRFDWSRITPDNPWKIIGNLPYN 112
Query: 142 VSTPLI 147
V++P++
Sbjct: 113 VASPMM 118
>gi|320159790|ref|YP_004173014.1| dimethyladenosine transferase [Anaerolinea thermophila UNI-1]
gi|319993643|dbj|BAJ62414.1| dimethyladenosine transferase [Anaerolinea thermophila UNI-1]
Length = 305
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 27/193 (13%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
L LPP+P + +++ + L K L QNFL +P + +IV +A EV E+GPG GS+
Sbjct: 23 LNLPPLP-VAALLRSHGLAPRKSLGQNFLTDPAILRRIVESAELPPQAEVLEIGPGLGSL 81
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TR +L + R+V +E D P LD + H GD++ F + S
Sbjct: 82 TR-VLAQVARRVVAVELDSTLIPLLDEVVSPYGNVEVLH-GDILQFDPARLMSSA----- 134
Query: 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV-----SLLERACVKPI 180
G ++ N+P+ +++ A+ +LL + Q VV + ER C P
Sbjct: 135 -----GYFVVANIPYYITS--------AVMRHLLEASIRPQRVVLTIQREVAERICAVPG 181
Query: 181 -LRPYQLSVQEFG 192
+ LSVQ +G
Sbjct: 182 EMSLLALSVQVYG 194
>gi|90020384|ref|YP_526211.1| dimethyladenosine transferase [Saccharophagus degradans 2-40]
gi|119365059|sp|Q21MT0.1|RSMA_SACD2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|89949984|gb|ABD79999.1| dimethyladenosine transferase [Saccharophagus degradans 2-40]
Length = 268
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 13/129 (10%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL + + + IVR+ G + + E+GPG G+IT ++ P+ + ++E D
Sbjct: 13 RARKRFGQNFLEDQGIINAIVRSIGPKASDNLVEIGPGKGAITAQLIESCPS-MQVVELD 71
Query: 84 PRFTPCLDMLAQ-ASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
P L LAQ A H D + F + + +R +R++GNLP+N+
Sbjct: 72 RDLIPIL--LAQFAIYNDFRIHQTDALKFDFGQLATPER---------PLRVVGNLPYNI 120
Query: 143 STPLIIKWI 151
STPLI +
Sbjct: 121 STPLIFHLL 129
>gi|392552366|ref|ZP_10299503.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudoalteromonas spongiae UST010723-006]
Length = 268
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 27/186 (14%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL + + DKIV G+ + E+GPG G+IT + L ++E D
Sbjct: 10 RARKRFGQNFLHDTSIIDKIVTAIDPKPGDNLVEIGPGLGAITEPVA-ELTDHLTVVELD 68
Query: 84 PRFTPCL---DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
L LA + H GD M F ++ +++R+ +++ GNLP+
Sbjct: 69 KDLAHRLIHHPFLADK----LTVHQGDAMQFDFASLINDERK---------LKVFGNLPY 115
Query: 141 NVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 200
NVSTPL+ + F ++ + L + + + P + FG++ + +
Sbjct: 116 NVSTPLLFHLFE-------FYQNIEHMHFMLQKEVVKRMVASP---DSKAFGRLSVMTQY 165
Query: 201 MCEEMP 206
C MP
Sbjct: 166 YCHAMP 171
>gi|452995111|emb|CCQ93252.1| dimethyladenosine 16S ribosomal RNA transferase [Clostridium
ultunense Esp]
Length = 289
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 10/150 (6%)
Query: 4 KALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPG 63
K RL IR+I+ Y K L QNFL + + KI + + V E+GPG G
Sbjct: 2 KDKRLYSPKYIREILDKYGFEFSKSLGQNFLIDGNIVRKIGQEGNITKEDYVLEIGPGIG 61
Query: 64 SITRSI-LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRR 122
++T + LN + ++V +E D P LD + P H GD++ + + E
Sbjct: 62 TLTEELALNAK--KVVAVELDKSLLPILDETLRDYPNIEIIH-GDILRVDINRLIEEKM- 117
Query: 123 RDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ 152
G P I+++ NLP+ V+TP+I K I+
Sbjct: 118 ----AGGP-IKVVANLPYYVTTPIIAKLIE 142
>gi|440694167|ref|ZP_20876804.1| dimethyladenosine transferase [Streptomyces turgidiscabies Car8]
gi|440283867|gb|ELP71070.1| dimethyladenosine transferase [Streptomyces turgidiscabies Car8]
Length = 310
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 21/165 (12%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
IR++ ++ +R KQ QNF+ + +IVR AG + V EVGPG GS+T ++L
Sbjct: 22 IRELAEVLGVRPTKQRGQNFVIDANTVRRIVRTAGVRPDDVVVEVGPGLGSLTLALLE-A 80
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHL---GDVMSFTMQNMFSEDRRRDWSEGLP 130
R+V +E D D+LA A P V D S + S+ R G P
Sbjct: 81 ADRVVAVEID-------DVLAGALPATVAARTPTRADRFSL----VHSDAMRVTELPGPP 129
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERA 175
++ NLP+NV+ P+++ ++ FP +R LV+ E A
Sbjct: 130 PTALVANLPYNVAVPVLLHMLET------FPSIERTLVMVQAEVA 168
>gi|384082643|ref|ZP_09993818.1| dimethyladenosine transferase [gamma proteobacterium HIMB30]
Length = 267
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 24/133 (18%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP 84
A K+ QNFL + R+ D I+ + + V E+GPG G+IT + R L+LIE D
Sbjct: 9 ARKRFGQNFLIDGRVVDAILASINASASDTVVEIGPGHGAITEGLFASR-CDLILIELDR 67
Query: 85 RFTPCLDMLAQASPCPVHFHLGDVMSFTMQN-----MFSED-RRRDWSEGLPGIRIIGNL 138
D++A G + SF Q+ + +ED + D+++ +RI+GNL
Sbjct: 68 ------DLVA-----------GLLASFVSQSPERCRLLNEDVLKVDFTQLGHALRIVGNL 110
Query: 139 PFNVSTPLIIKWI 151
P+N+STPL+ K +
Sbjct: 111 PYNISTPLLFKLL 123
>gi|345870079|ref|ZP_08822034.1| Ribosomal RNA small subunit methyltransferase A [Thiorhodococcus
drewsii AZ1]
gi|343922466|gb|EGV33168.1| Ribosomal RNA small subunit methyltransferase A [Thiorhodococcus
drewsii AZ1]
Length = 264
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 25/132 (18%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA-RLVLIEKD-- 83
K+ QNFL +P + +I G G+ + E+GPG G+IT+ +L A +V +++D
Sbjct: 7 KRFGQNFLHDPSVIQRIHTAIGAKPGDRLVEIGPGQGAITQGLLTATGALDVVELDRDLI 66
Query: 84 ----PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
R P D+ H D + F+++++ E R +R+IGNLP
Sbjct: 67 EPLRARLGPLGDL---------RIHNVDALKFSLRDLAGETGR---------VRVIGNLP 108
Query: 140 FNVSTPLIIKWI 151
+N+STPL+ ++
Sbjct: 109 YNISTPLLFHFL 120
>gi|430833896|ref|ZP_19451906.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0679]
gi|430836845|ref|ZP_19454822.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0680]
gi|430839877|ref|ZP_19457814.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0688]
gi|430859339|ref|ZP_19476951.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1552]
gi|430485796|gb|ELA62677.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0679]
gi|430488168|gb|ELA64861.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0680]
gi|430490326|gb|ELA66858.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E0688]
gi|430543700|gb|ELA83755.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1552]
Length = 294
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K L QNFL EP + KIV A V EVGPG G++T L + ++V E D R
Sbjct: 26 KSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQ-LAKHAKQVVAFEIDDRL 84
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P L A + ++ V ++ S R + E LP ++++ NLP+ ++TP+
Sbjct: 85 IPVL-----ADTMQPYDNVTIVHQDILKTDLSTAVRETFHEELP-LKVVANLPYYITTPI 138
Query: 147 IIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQEFGQICLAY 198
++ ++++ +L+ + + + +R +P + Y ++VQ + + LA+
Sbjct: 139 MMHFLES---DLVVDELVVMIQKEVADRISAEPGTKAYGSLSIAVQYYMEASLAF 190
>gi|326772378|ref|ZP_08231663.1| dimethyladenosine transferase [Actinomyces viscosus C505]
gi|326638511|gb|EGE39412.1| dimethyladenosine transferase [Actinomyces viscosus C505]
Length = 367
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 26/152 (17%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R + + +R K L QNF+ + +IVR AG + V E+GPG GS+T ++L
Sbjct: 73 VRGLCQALGIRPTKTLGQNFVHDAGTVRRIVRTAGVRPQDTVLEIGPGLGSLTLALLETG 132
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHL-----------GDVMSFTMQNMFSEDRR 122
AR++ +E DP LA+A P V + D +S T + E
Sbjct: 133 -ARVIAVEIDP-------ALARALPVTVADRMPHAAGRLTLIQADALSITGPDSLGEAEP 184
Query: 123 RDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAI 154
P R++ NLP+NV+ P+++ ++A+
Sbjct: 185 -------PPTRLVANLPYNVAVPVLLTALEAL 209
>gi|220904363|ref|YP_002479675.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868662|gb|ACL48997.1| dimethyladenosine transferase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 279
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 19/140 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTIT---GNEVCEVGPGPGSITR 67
P ++ I + RA K L Q+FL R D R A I + + E+GPGPG++TR
Sbjct: 5 FPHMKKNIVTHTPRAKKSLGQHFL---RREDTCCRIAALIAPAAQDRIIEIGPGPGALTR 61
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
+I +RL+L+EKD + L A+ V L D + F + + E+ W
Sbjct: 62 AIEATPHSRLLLLEKDRHWAAERQRLGGANTQAV---LIDALKFAWRRISPEE---PW-- 113
Query: 128 GLPGIRIIGNLPFNVSTPLI 147
+IIGNLP+NV++PLI
Sbjct: 114 -----KIIGNLPYNVASPLI 128
>gi|379727742|ref|YP_005319927.1| dimethyladenosine transferase [Melissococcus plutonius DAT561]
gi|376318645|dbj|BAL62432.1| dimethyladenosine transferase [Melissococcus plutonius DAT561]
Length = 294
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL EP + KIV A V EVGPG G++T L ++
Sbjct: 14 KEILKKYDFSLKKSLGQNFLTEPNILKKIVATANLTKEVNVIEVGPGIGALTEQ-LAQQA 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
+++ E D L A + ++ V ++ ++ + + + P I+I
Sbjct: 73 GQVLAFEIDHNLIRIL-----ADTLQSYNNITIVNQDVLKTDLVKETQAVFQQAYP-IKI 126
Query: 135 IGNLPFNVSTPLIIKWIQA--ISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQ 189
+ NLP+ ++TP+++ ++Q+ I E ++ K + +R KP + Y ++VQ
Sbjct: 127 VANLPYYITTPILMYFLQSDLIVEEMVVMMQKE-----VADRISAKPGTKAYGSLSIAVQ 181
Query: 190 EFGQICLAY 198
F + +A+
Sbjct: 182 YFMEATIAF 190
>gi|254444818|ref|ZP_05058294.1| dimethyladenosine transferase [Verrucomicrobiae bacterium DG1235]
gi|198259126|gb|EDY83434.1| dimethyladenosine transferase [Verrucomicrobiae bacterium DG1235]
Length = 271
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 24/201 (11%)
Query: 8 LPPMPS-IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
+P PS R++++ R KQL QNFL + + K + A G+ V E+GPG G++T
Sbjct: 1 MPLSPSQTRELLEQLGHRPKKQLGQNFLIDGNIVRKSLELAQVTPGDHVVEIGPGLGTLT 60
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
R++L+ A + +E DP + LA SP +H GD + + ++ +
Sbjct: 61 RALLDAG-AIVHAVEFDPTLGAHVARLAADSPN-LHLIKGDALDHPLGDLPPDTE----- 113
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQL 186
+I+ NLP+ +STP W+ A+ E+ L L +R K
Sbjct: 114 -----YKIVANLPYAISTP----WMAAVLESQLPSVMTLMLQKEAAQRYAAKA------- 157
Query: 187 SVQEFGQICLAYRDMCEEMPG 207
++FG I + + +PG
Sbjct: 158 GTKQFGAISIFLHAAFDILPG 178
>gi|452990586|emb|CCQ98207.1| dimethyladenosine 16S ribosomal RNA transferase [Clostridium
ultunense Esp]
Length = 282
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 15/141 (10%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
+I+K Y + K L QNFL +P + KI +A + + V E+GPG G +T L +R
Sbjct: 13 EILKKYGVSLRKSLGQNFLIDPNMVKKIAESAHLESEDGVIEIGPGVGVLTAE-LAKRAK 71
Query: 76 RLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS----EDRRRDWSEGLPG 131
++V +E D R P L + + H GD++ + + S E +R
Sbjct: 72 KVVAVEIDGRLIPILSDIFRDWKSIRIIH-GDILKINLHEITSFLLQETKR--------- 121
Query: 132 IRIIGNLPFNVSTPLIIKWIQ 152
+ ++ NLP+ V+TP++++ ++
Sbjct: 122 VHVVANLPYYVTTPILMRLLE 142
>gi|423583691|ref|ZP_17559802.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD014]
gi|423633628|ref|ZP_17609281.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD156]
gi|401208323|gb|EJR15090.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD014]
gi|401283338|gb|EJR89233.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD156]
Length = 292
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI++ Y K L QNFL + + ++IV +A + + E+GPG G++T L +R
Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQ-LAKRA 69
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P LD LA V DV+ + +F+E + EG +
Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYGNVTVINK--DVLKADVHEVFNE----QFEEG-QDVM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP++ K ++
Sbjct: 123 VVANLPYYITTPILFKLLE 141
>gi|149182822|ref|ZP_01861284.1| dimethyladenosine transferase [Bacillus sp. SG-1]
gi|148849489|gb|EDL63677.1| dimethyladenosine transferase [Bacillus sp. SG-1]
Length = 292
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL +P + I AG E+GPG G++T L R
Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDPNILRNITEYAGLTEKTAAIEIGPGIGALTEH-LARTA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++ E D R P L D L+ + + DV+ +Q M E D+ + I
Sbjct: 71 GKVLAFEIDQRLLPILADTLSPYNNITIVNE--DVLKADVQEMI-EKELADYED----IM 123
Query: 134 IIGNLPFNVSTPLIIKWI 151
++ NLP+ V+TP+I+K +
Sbjct: 124 VVANLPYYVTTPIILKLL 141
>gi|220927630|ref|YP_002504539.1| dimethyladenosine transferase [Clostridium cellulolyticum H10]
gi|219997958|gb|ACL74559.1| dimethyladenosine transferase [Clostridium cellulolyticum H10]
Length = 290
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 7/140 (5%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
+IIK ++L+ K L QNFL + + +IV + E+GPG GS+TR L R A
Sbjct: 8 EIIKKHRLKLTKALGQNFLTDFSVVKRIVDASDIDKDTLAIEIGPGVGSMTRE-LAARSA 66
Query: 76 RLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
+ IE D R P L D L+ S + D+M + + ++ R +++
Sbjct: 67 GVAAIEIDKRLIPALNDNLSDYSNVSIINE--DIMKADIDTIINKYRE---VYNAKSVKV 121
Query: 135 IGNLPFNVSTPLIIKWIQAI 154
+ NLP+ ++TP+I+++++ +
Sbjct: 122 VANLPYYITTPIIMRFLEEV 141
>gi|297243121|ref|ZP_06927059.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis AMD]
gi|296889332|gb|EFH28066.1| rRNA dimethyladenosine transferase [Gardnerella vaginalis AMD]
Length = 298
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 27/181 (14%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
IR I + K+ QNF+ +P KIV AG +G+ V EVGPG GS+T +IL +
Sbjct: 23 IRRIAAEEGITPTKKFGQNFVIDPGTVRKIVAAAGVKSGDIVMEVGPGLGSLTLAIL-QT 81
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQ--NMFSEDRRRDWSEGLPG 131
A+L +E DP LA+ P V + M MQ N+ +D ++ +P
Sbjct: 82 GAQLTAVEIDPP-------LARRLPHTVE----EFMPKAMQKFNVILKDALTVNADDVPQ 130
Query: 132 I------RIIGNLPFNVSTPLIIKWIQAIS--ENLLFPKHKRQLVVSLLERACVKPILRP 183
I ++ NLP+NV+TP+I+ ++ S +N L K + +R C +P +
Sbjct: 131 IAQAKKFTLVANLPYNVATPIILTLLEKFSNLQNFLVMVQKE-----VADRLCAQPGNKV 185
Query: 184 Y 184
Y
Sbjct: 186 Y 186
>gi|388454984|ref|ZP_10137279.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Fluoribacter dumoffii Tex-KL]
Length = 256
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 33/199 (16%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K+ QNFL + D IVR + + E+GPG G++T +L RR +L +E D
Sbjct: 7 KRFGQNFLQNRHIIDDIVRAINPQAEDNMLEIGPGLGALTEPLL-RRLNKLTAVEIDWDL 65
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
L ++ A +H D ++ D+S+ +R++GNLP+N+STPL
Sbjct: 66 QKHLSAMSVAQ-NKLHLIAADALTL------------DYSQFGTHLRVVGNLPYNISTPL 112
Query: 147 IIKWIQAIS--ENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEE 204
+I + S E++ F K ++ER +P + Y G++ + + C
Sbjct: 113 LIHLLNYASHIEDMHFMLQK-----EVVERMAAQPGSKAY-------GRLTVMLQYHC-- 158
Query: 205 MPGLYEYTLEDTPGDIEPE 223
+ EY + P +P+
Sbjct: 159 ---VVEYLFDVPPEAFDPQ 174
>gi|160943226|ref|ZP_02090462.1| hypothetical protein FAEPRAM212_00712 [Faecalibacterium prausnitzii
M21/2]
gi|158445465|gb|EDP22468.1| dimethyladenosine transferase [Faecalibacterium prausnitzii M21/2]
Length = 311
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 18/150 (12%)
Query: 10 PMPS------IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPG 63
PMP IR + + Y K QNF+ P + KIV +G V E+GPG G
Sbjct: 28 PMPELTDLSVIRALCEKYDFALSKGFGQNFIINPGIPTKIVDASGVDKRYGVIEIGPGIG 87
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRR 123
+T+ L +R A++V IE D R P +LA+ +F L +Q++ D +
Sbjct: 88 VLTKE-LAKRAAKVVSIEVDERLPP---LLAETMAGVDNFKL------VLQDVLKVDLKA 137
Query: 124 DWSEGLPG--IRIIGNLPFNVSTPLIIKWI 151
+E PG + + NLP+ +++P+++K +
Sbjct: 138 LIAEEFPGMPVAVCANLPYYITSPIVMKLL 167
>gi|30018312|ref|NP_829943.1| dimethyladenosine transferase [Bacillus cereus ATCC 14579]
gi|75759603|ref|ZP_00739689.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218232555|ref|YP_002364891.1| dimethyladenosine transferase [Bacillus cereus B4264]
gi|218895177|ref|YP_002443588.1| dimethyladenosine transferase [Bacillus cereus G9842]
gi|296500873|ref|YP_003662573.1| dimethyladenosine transferase [Bacillus thuringiensis BMB171]
gi|365164140|ref|ZP_09360225.1| ribosomal RNA small subunit methyltransferase A [Bacillus sp.
7_6_55CFAA_CT2]
gi|384184124|ref|YP_005570020.1| dimethyladenosine transferase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|402562867|ref|YP_006605591.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
thuringiensis HD-771]
gi|410672413|ref|YP_006924784.1| ribosomal RNA small subunit methyltransferase A [Bacillus
thuringiensis Bt407]
gi|423364604|ref|ZP_17342073.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD022]
gi|423387006|ref|ZP_17364261.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG1X1-2]
gi|423410733|ref|ZP_17387853.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG3O-2]
gi|423427594|ref|ZP_17404625.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG3X2-2]
gi|423433483|ref|ZP_17410487.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG4O-1]
gi|423438922|ref|ZP_17415903.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG4X12-1]
gi|423506603|ref|ZP_17483192.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HD73]
gi|423526660|ref|ZP_17503105.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HuB1-1]
gi|423565601|ref|ZP_17541876.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
MSX-A1]
gi|423589340|ref|ZP_17565426.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD045]
gi|423632839|ref|ZP_17608584.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD154]
gi|423644678|ref|ZP_17620295.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD166]
gi|423651362|ref|ZP_17626932.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD169]
gi|423658436|ref|ZP_17633735.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD200]
gi|434378684|ref|YP_006613328.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus thuringiensis HD-789]
gi|449086707|ref|YP_007419148.1| dimethyladenosine transferase [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|452196417|ref|YP_007476498.1| SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|33516920|sp|Q81JA5.1|RSMA_BACCR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226729753|sp|B7ISV1.1|RSMA_BACC2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226729754|sp|B7HIK9.1|RSMA_BACC4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|29893852|gb|AAP07144.1| Dimethyladenosine transferase [Bacillus cereus ATCC 14579]
gi|74492894|gb|EAO56024.1| Dimethyladenosine transferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218160512|gb|ACK60504.1| dimethyladenosine transferase [Bacillus cereus B4264]
gi|218541640|gb|ACK94034.1| dimethyladenosine transferase [Bacillus cereus G9842]
gi|296321925|gb|ADH04853.1| dimethyladenosine transferase [Bacillus thuringiensis BMB171]
gi|326937833|gb|AEA13729.1| dimethyladenosine transferase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|363613155|gb|EHL64677.1| ribosomal RNA small subunit methyltransferase A [Bacillus sp.
7_6_55CFAA_CT2]
gi|401072716|gb|EJP81178.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD022]
gi|401107989|gb|EJQ15925.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG3X2-2]
gi|401109964|gb|EJQ17881.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG3O-2]
gi|401111546|gb|EJQ19435.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG4O-1]
gi|401115410|gb|EJQ23262.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG4X12-1]
gi|401193678|gb|EJR00682.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
MSX-A1]
gi|401223993|gb|EJR30553.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD045]
gi|401258883|gb|EJR65064.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD154]
gi|401269462|gb|EJR75492.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD166]
gi|401278414|gb|EJR84347.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD169]
gi|401287769|gb|EJR93540.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
VD200]
gi|401630260|gb|EJS48066.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
BAG1X1-2]
gi|401791519|gb|AFQ17558.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus thuringiensis HD-771]
gi|401877241|gb|AFQ29408.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus thuringiensis HD-789]
gi|402447428|gb|EJV79280.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HD73]
gi|402455153|gb|EJV86937.1| ribosomal RNA small subunit methyltransferase A [Bacillus cereus
HuB1-1]
gi|409171542|gb|AFV15847.1| ribosomal RNA small subunit methyltransferase A [Bacillus
thuringiensis Bt407]
gi|449020464|gb|AGE75627.1| dimethyladenosine transferase [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|452101810|gb|AGF98749.1| SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 292
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI++ Y K L QNFL + + ++IV +A + + E+GPG G++T L +R
Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQ-LAKRA 69
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P LD LA V DV+ + +F+E + EG +
Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYGNVTVINK--DVLKADVHEVFNE----QFEEG-QDVM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP++ K ++
Sbjct: 123 VVANLPYYITTPILFKLLE 141
>gi|433445423|ref|ZP_20409830.1| dimethyladenosine transferase [Anoxybacillus flavithermus
TNO-09.006]
gi|432001071|gb|ELK21956.1| dimethyladenosine transferase [Anoxybacillus flavithermus
TNO-09.006]
Length = 295
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I++ Y K L QNFL EP + +IV A V E+GPG G++T L RR
Sbjct: 12 KEILEKYGFSFKKSLGQNFLIEPNVLHRIVDFAQLSERTGVIEIGPGIGALTEQ-LARRA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L+ + + D++ +Q + +E + I
Sbjct: 71 KKVVAFEIDQRLLPILADTLSPYTNVSIIHE--DILKADVQQVIAE-----QFTDVDDIM 123
Query: 134 IIGNLPFNVSTPLIIKWI 151
++ NLP+ V+TP+I+K +
Sbjct: 124 VVANLPYYVTTPIIMKLL 141
>gi|407459112|ref|YP_006737215.1| dimethyladenosine transferase [Chlamydia psittaci M56]
gi|405786625|gb|AFS25370.1| dimethyladenosine transferase [Chlamydia psittaci M56]
Length = 278
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 16/124 (12%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K LSQNFL + + KI+ + G+ V E+GPG G++T ++N + A +V +EKDP F
Sbjct: 22 KGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVN-QGAHVVALEKDPMF 80
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEGLPGIRIIGNLPFNVSTP 145
L L +H + D + + S+ + + W +G R++ NLP++V+TP
Sbjct: 81 EETLKQLL------IHLEITDACKYPL----SQLQDKGWQGKG----RVVANLPYHVTTP 126
Query: 146 LIIK 149
L+ K
Sbjct: 127 LLTK 130
>gi|255348718|ref|ZP_05380725.1| dimethyladenosine transferase [Chlamydia trachomatis 70]
gi|255503258|ref|ZP_05381648.1| dimethyladenosine transferase [Chlamydia trachomatis 70s]
Length = 277
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 16/129 (12%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
R K LSQNFL + + KI+ A G+ V E+GPG G+++ +L+ + A ++ +EKD
Sbjct: 19 RVKKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFGALSEVLLS-QGANVIALEKD 77
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI-RIIGNLPFNV 142
P F L L P+ + D + + ++ ED+ G G RI+ NLP+++
Sbjct: 78 PMFEESLSQL------PMDIEITDACEYPLTSL--EDK------GWKGKGRIVANLPYHI 123
Query: 143 STPLIIKWI 151
+TPL+ K+
Sbjct: 124 TTPLLTKFF 132
>gi|167754973|ref|ZP_02427100.1| hypothetical protein CLORAM_00477 [Clostridium ramosum DSM 1402]
gi|237735300|ref|ZP_04565781.1| dimethyladenosine transferase [Mollicutes bacterium D7]
gi|365829675|ref|ZP_09371267.1| dimethyladenosine transferase [Coprobacillus sp. 3_3_56FAA]
gi|374626710|ref|ZP_09699121.1| dimethyladenosine transferase [Coprobacillus sp. 8_2_54BFAA]
gi|167705023|gb|EDS19602.1| dimethyladenosine transferase [Clostridium ramosum DSM 1402]
gi|229381045|gb|EEO31136.1| dimethyladenosine transferase [Coprobacillus sp. D7]
gi|365264408|gb|EHM94215.1| dimethyladenosine transferase [Coprobacillus sp. 3_3_56FAA]
gi|373913957|gb|EHQ45791.1| dimethyladenosine transferase [Coprobacillus sp. 8_2_54BFAA]
Length = 268
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 12 PSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILN 71
+ + I++ Y L ALK+ QNFL + + +KIV +A V EVGPG G++T+ +L
Sbjct: 8 STTKYILEKYHLNALKKYGQNFLIDVNIINKIVTSAKIDQTTAVIEVGPGIGALTQ-VLG 66
Query: 72 RRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
R ++ E D RF P + F GD M ++ + + ++R
Sbjct: 67 RYSGKVTSFEIDERFMPVYQEFLNQDNIEIIF--GDFMEQDIKPIVDQLKQR-----YQK 119
Query: 132 IRIIGNLPFNVSTPLIIKWI 151
+ ++ NLP+ ++T +I K +
Sbjct: 120 VCLVANLPYYITTAIIEKVV 139
>gi|302390854|ref|YP_003826674.1| dimethyladenosine transferase [Acetohalobium arabaticum DSM 5501]
gi|302202931|gb|ADL11609.1| dimethyladenosine transferase [Acetohalobium arabaticum DSM 5501]
Length = 290
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 101/195 (51%), Gaps = 22/195 (11%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
R+ + R+I++ ++ K L QNFL + + DKI+ +A + + V E+GPG GS+T
Sbjct: 4 RIANPSTTREILEENGIQLKKSLGQNFLVDRNIIDKIIVSADLTSYDHVIEIGPGIGSLT 63
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
+ + A + IE D RF L+ ++ V+F D + + + + ++
Sbjct: 64 QRLAEGAKA-VWAIELDERFIKILEE-NLSNYNNVNFIQADALEYDFEQLLTK------- 114
Query: 127 EGLPG--IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY 184
L G I+++ NLP+ ++TP+I++ ++ E L F + VV ++++ + I+
Sbjct: 115 --LSGESIKVVANLPYYITTPIIMRLLE---EKLPFER-----VVVMVQKEVAERIVATP 164
Query: 185 QLSVQEFGQICLAYR 199
+ +++G + LA R
Sbjct: 165 E-DGKKYGSLSLAVR 178
>gi|295702279|ref|YP_003595354.1| dimethyladenosine transferase [Bacillus megaterium DSM 319]
gi|294799938|gb|ADF37004.1| dimethyladenosine transferase [Bacillus megaterium DSM 319]
Length = 292
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + +IV +A E+GPG G++T L +R
Sbjct: 12 KEILKKYGFTFKKSLGQNFLIDTNILHRIVDHAEITEETGAIEIGPGIGALTEQ-LAKRA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++ E D R P L D L+ S V DV+ ++ M ++ E + +
Sbjct: 71 KKVLAFEIDQRLLPILADTLSPYSNAKVIHQ--DVLKADLKGMLEQE-----FENIEDLM 123
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQ 193
++ NLP+ V+TP+++K ++ E + L + ER KP +E+G
Sbjct: 124 VVANLPYYVTTPILMKLLE---EQIPVRGIVVMLQKEVAERIAAKP-------GTKEYGS 173
Query: 194 ICLAYRDMCE 203
+ +A + E
Sbjct: 174 LSIAIQYYTE 183
>gi|194017982|ref|ZP_03056589.1| dimethyladenosine transferase [Bacillus pumilus ATCC 7061]
gi|194010319|gb|EDW19894.1| dimethyladenosine transferase [Bacillus pumilus ATCC 7061]
Length = 292
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 16/147 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + D+IV +A V E+GPG G++T L +R
Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQ-LAKRA 70
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG--- 131
++ E D R P L+ SP D ++ Q++ D + E
Sbjct: 71 KKVTAFEIDQRLLPILN--DTLSPY-------DNVTIIHQDVLKADVGKVIEENFADCKE 121
Query: 132 IRIIGNLPFNVSTPLIIKWIQAISENL 158
+ ++ NLP+ V+TP+I+K ++ ENL
Sbjct: 122 VMVVANLPYYVTTPIIMKLLE---ENL 145
>gi|206972590|ref|ZP_03233533.1| dimethyladenosine transferase [Bacillus cereus AH1134]
gi|206732492|gb|EDZ49671.1| dimethyladenosine transferase [Bacillus cereus AH1134]
Length = 292
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI++ Y K L QNFL + + ++IV +A + + E+GPG G++T L +R
Sbjct: 11 KDIVEKYGFSFKKSLGQNFLIDTNVLNRIVDHAEIGSESGAIEIGPGIGALTEQ-LAKRA 69
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P LD LA V DV+ + +F+E + EG +
Sbjct: 70 KKVVAFEIDQRLLPILDETLAPYGNVTVINK--DVLKADVHEVFNE----QFEEG-QDVM 122
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP++ K ++
Sbjct: 123 VVANLPYYITTPILFKLLE 141
>gi|150387987|ref|YP_001318036.1| dimethyladenosine transferase [Alkaliphilus metalliredigens QYMF]
gi|166987687|sp|A6TJK9.1|RSMA_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|149947849|gb|ABR46377.1| dimethyladenosine transferase [Alkaliphilus metalliredigens QYMF]
Length = 287
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+ I++ YK R K L QNFL + + + IV A + V E+GPG G++T+ I +
Sbjct: 11 KAIVEKYKFRFSKSLGQNFLIDQNILEDIVDGADIQPDDCVIEIGPGIGTLTQFI-AEKA 69
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
++V IE D P L A V DV+ + + + D EG P +++
Sbjct: 70 HKVVAIEIDRNLIPILKH-TLADYQNVEVINQDVLKVDLHQLIA-----DKFEGKP-VKV 122
Query: 135 IGNLPFNVSTPLIIKWIQ 152
I NLP+ V+TP+++++++
Sbjct: 123 IANLPYYVTTPIVMRFLE 140
>gi|406667835|ref|ZP_11075587.1| Ribosomal RNA small subunit methyltransferase A [Bacillus
isronensis B3W22]
gi|405384350|gb|EKB43797.1| Ribosomal RNA small subunit methyltransferase A [Bacillus
isronensis B3W22]
Length = 295
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I++ Y K L QNFL +P + IV +A + EVGPG G++T L R
Sbjct: 12 KEILEKYGFSFKKSLGQNFLIDPNILRNIVSHANLTENSGAIEVGPGIGALTEH-LAREA 70
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR- 133
++V E D R P L+ SP D + ++ D + E +PGI
Sbjct: 71 KKVVSFEIDQRLLPVLE--DTLSPY-------DNVKIVHSDILKADVAQVIEEEMPGIED 121
Query: 134 --IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ V+TP+++K +
Sbjct: 122 IMVVANLPYYVTTPILMKLLN 142
>gi|392988704|ref|YP_006487297.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Enterococcus
hirae ATCC 9790]
gi|392336124|gb|AFM70406.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Enterococcus hirae ATCC 9790]
Length = 296
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 15/176 (8%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K L QNFL EP + KIV V EVGPG G++T L R ++V E D R
Sbjct: 26 KSLGQNFLTEPNILRKIVETGEIDQQTNVIEVGPGIGALTEQ-LARNANQVVAFEIDDRL 84
Query: 87 TPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP 145
P L D LA P P ++ V ++ + + + LP I+++ NLP+ ++TP
Sbjct: 85 IPVLKDTLA---PYP---NVTVVHQDILKTNLDQAATTYFEQALP-IKVVANLPYYITTP 137
Query: 146 LIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQEFGQICLAY 198
+++ ++++ +L + + + +R KP + Y ++VQ F + +A+
Sbjct: 138 IMMHFLES---DLQVEEMVVMMQKEVADRISAKPGTKAYGSLSIAVQYFMEASVAF 190
>gi|376259552|ref|YP_005146272.1| dimethyladenosine transferase [Clostridium sp. BNL1100]
gi|373943546|gb|AEY64467.1| dimethyladenosine transferase [Clostridium sp. BNL1100]
Length = 285
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 7/140 (5%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
+IIK + L+ K L QNFL + + +IV + E+GPG GS+TR L R A
Sbjct: 8 EIIKKHGLKLTKALGQNFLTDFSVVQRIVDASDMDKDTLAIEIGPGVGSMTRE-LAARSA 66
Query: 76 RLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
+ IE D R P L D L+ S + D+M + + E R ++ +++
Sbjct: 67 GVAAIEIDKRLIPALNDNLSDYSNVSIINQ--DIMKADIDAIIKEYRELYNAK---SVKV 121
Query: 135 IGNLPFNVSTPLIIKWIQAI 154
+ NLP+ ++TP+I+++++ +
Sbjct: 122 VANLPYYITTPIIMRFLEEV 141
>gi|393198767|ref|YP_006460609.1| dimethyladenosine transferase [Solibacillus silvestris StLB046]
gi|327438098|dbj|BAK14463.1| dimethyladenosine transferase [Solibacillus silvestris StLB046]
Length = 295
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I++ Y K L QNFL +P + IV +A + EVGPG G++T L R
Sbjct: 12 KEILEKYGFSFKKSLGQNFLIDPNILRNIVSHANLTENSGAIEVGPGIGALTEH-LAREA 70
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR- 133
++V E D R P L+ SP D + ++ D + E +PGI
Sbjct: 71 KKVVSFEIDQRLLPVLE--DTLSPY-------DNVKIVHSDILKADVAQVIEEEMPGIED 121
Query: 134 --IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ V+TP+++K +
Sbjct: 122 IMVVANLPYYVTTPILMKLLN 142
>gi|300088594|ref|YP_003759116.1| dimethyladenosine transferase [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299528327|gb|ADJ26795.1| dimethyladenosine transferase [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 306
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R ++ + L A K L QNFL + + DKIVR AG T + V EVGPGPG +T + L +
Sbjct: 35 VRRLLDSHGLSARKGLGQNFLIDRGVLDKIVRAAGIETADTVVEVGPGPGVMT-AALAEK 93
Query: 74 PARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
+++ +E D L + + Q S V GD++ + + G
Sbjct: 94 AGQVIAVELDFGMVAALRETVGQRSNVKV--IAGDILDISPSEL----------TGASPY 141
Query: 133 RIIGNLPFNVSTPLIIKWIQA 153
+++ NLP+ +++P++ +++A
Sbjct: 142 KVVANLPYYITSPVLRHFLEA 162
>gi|157690824|ref|YP_001485286.1| dimethyladenosine transferase [Bacillus pumilus SAFR-032]
gi|166987691|sp|A8F909.1|RSMA_BACP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|157679582|gb|ABV60726.1| dimethyladenosine transferase [Bacillus pumilus SAFR-032]
Length = 292
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 16/147 (10%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL + + D+IV +A V E+GPG G++T L +R
Sbjct: 12 KEILKKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQ-LAKRA 70
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG--- 131
++ E D R P L+ SP D ++ Q++ D + E
Sbjct: 71 KKVTAFEIDQRLLPILN--DTLSPY-------DNVTIIHQDVLKADVGKVIEENFADCKE 121
Query: 132 IRIIGNLPFNVSTPLIIKWIQAISENL 158
+ ++ NLP+ V+TP+I+K ++ ENL
Sbjct: 122 VMVVANLPYYVTTPIIMKLLE---ENL 145
>gi|53805073|ref|YP_113120.1| dimethyladenosine transferase [Methylococcus capsulatus str. Bath]
gi|62900497|sp|Q60B77.1|RSMA_METCA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|53758834|gb|AAU93125.1| dimethyladenosine transferase [Methylococcus capsulatus str. Bath]
Length = 257
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 14/136 (10%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K+ QNFL +P + +IV G + + E+GPG G +TR +L + A L IE D
Sbjct: 7 KRFGQNFLRDPGVIQEIVAAVGPAPSDRLVEIGPGEGVLTRELL-QSGACLEAIELDRDL 65
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
L A + H GD M F ++ + + +R +R++GNLP+N+STPL
Sbjct: 66 VAALKRRF-AGVGRLRIHEGDAMKFDLRTIATGER----------LRVVGNLPYNISTPL 114
Query: 147 IIKWIQAIS--ENLLF 160
+ I E++ F
Sbjct: 115 LFHLFDQIDVIEDMHF 130
>gi|375087673|ref|ZP_09734019.1| dimethyladenosine transferase [Dolosigranulum pigrum ATCC 51524]
gi|374563949|gb|EHR35253.1| dimethyladenosine transferase [Dolosigranulum pigrum ATCC 51524]
Length = 296
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 19/188 (10%)
Query: 17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPAR 76
I+K Y L+A K L QNFL + + +KIV V E+GPG G++T I R +
Sbjct: 14 ILKRYNLQAKKSLGQNFLIDTNILEKIVAAGSVDKRTTVIEIGPGIGALTEQIA-RHAKQ 72
Query: 77 LVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII 135
+ E D R P L + LA + V D++ + R++ + ++
Sbjct: 73 VYAFEIDQRLIPVLEETLADYTNIEVFNQ--DILDVNLSEF-----ERNYLAEAERVVVM 125
Query: 136 GNLPFNVSTPLIIKWIQA--ISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQE 190
NLP+ ++TP+I+ +++ ++ L+F K + R +P + Y +++Q
Sbjct: 126 ANLPYYITTPIIMGILESGLEADQLVFMVQKE-----VAARMSAEPGTKDYGSLSIALQY 180
Query: 191 FGQICLAY 198
FG+ LA+
Sbjct: 181 FGEPELAF 188
>gi|415710021|ref|ZP_11463582.1| dimethyladenosine transferase [Gardnerella vaginalis 6420B]
gi|388055715|gb|EIK78607.1| dimethyladenosine transferase [Gardnerella vaginalis 6420B]
Length = 302
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 27/181 (14%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
IR I + K+ QNF+ +P KIV AG +G+ V EVGPG GS+T +IL +
Sbjct: 27 IRRIAAEEGITPTKKFGQNFVIDPGTVRKIVAAAGVKSGDIVMEVGPGLGSLTLAIL-QT 85
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQ--NMFSEDRRRDWSEGLPG 131
A+L +E DP LA+ P V + M MQ N+ +D ++ +P
Sbjct: 86 GAQLTAVEIDPP-------LARRLPHTVE----EFMPKAMQKFNVILKDALTVNADDVPQ 134
Query: 132 I------RIIGNLPFNVSTPLIIKWIQAIS--ENLLFPKHKRQLVVSLLERACVKPILRP 183
I ++ NLP+NV+TP+I+ ++ S +N L K + +R C +P +
Sbjct: 135 IAQAKKFTLVANLPYNVATPIILTLLEKFSNLQNFLVMVQKE-----VADRLCAQPGNKV 189
Query: 184 Y 184
Y
Sbjct: 190 Y 190
>gi|336112704|ref|YP_004567471.1| dimethyladenosine transferase [Bacillus coagulans 2-6]
gi|335366134|gb|AEH52085.1| dimethyladenosine transferase [Bacillus coagulans 2-6]
Length = 295
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+ I+ Y K L QNFL +P + I A + V EVGPG G++T L R
Sbjct: 12 KAILNRYGFSFKKSLGQNFLIDPNILRNITDTADLTQESGVVEVGPGIGALTEH-LARSS 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
++V E D R P L D LA P P ++ DV+ ++ + + G+ I
Sbjct: 71 KKVVAFEIDKRLAPILEDTLA---PYPNINVIYEDVLKADIEKVLETE-----FAGINDI 122
Query: 133 RIIGNLPFNVSTPLIIKWI 151
++ NLP+ V+TP+I+K++
Sbjct: 123 MVVANLPYYVTTPIILKFV 141
>gi|295105199|emb|CBL02743.1| dimethyladenosine transferase [Faecalibacterium prausnitzii SL3/3]
Length = 283
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 12/140 (8%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
IR + + Y K QNF+ P + KIV +G V E+GPG G +T+ L +R
Sbjct: 10 IRALCEKYDFALSKGFGQNFIINPGIPTKIVDASGVDKRYGVIEIGPGIGVLTKE-LAKR 68
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-- 131
A++V IE D R P +LA+ +F L +Q++ D + +E PG
Sbjct: 69 AAKVVSIEVDERLPP---LLAETMAGVDNFKL------VLQDVLKVDLKALIAEEFPGMP 119
Query: 132 IRIIGNLPFNVSTPLIIKWI 151
+ + NLP+ +++P+++K +
Sbjct: 120 VAVCANLPYYITSPIVMKLL 139
>gi|406909010|gb|EKD49361.1| hypothetical protein ACD_63C00170G0001 [uncultured bacterium]
Length = 273
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 95/182 (52%), Gaps = 18/182 (9%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
IR I+ + L ++ L QNFL + R+ +K+VR + G+ + EVGPG G +T ++L RR
Sbjct: 7 IRSILLSHSLAPIRGLGQNFLIDERVIEKLVRASNIKRGDFIVEVGPGLGVLTDAVL-RR 65
Query: 74 PARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
+ + +E D F L + VH DV++ + + ++ G
Sbjct: 66 TSNVFAVEIDRGFVEFLKERFGDQKLKIVH---RDVLNLDIAGLALKN---------YGY 113
Query: 133 RIIGNLPFNVSTPLIIKWIQ-AISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEF 191
+++ NLPFN++T +II +++ IS + + ++++ ++E+ +L L+V+ F
Sbjct: 114 KVVSNLPFNIATAVIIFFLKNKISPSEIIVVLQKEVAERIVEKEGKSSVL---SLTVRIF 170
Query: 192 GQ 193
G+
Sbjct: 171 GE 172
>gi|307091990|gb|ADN28330.1| putative rRNA methyltransferase, partial [uncultured bacterium]
Length = 117
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ 95
+ L IV G TG+ + E+GPG G++T L + RL L+EKD R L +
Sbjct: 2 DKNLARWIVDQLGVQTGDHIVEIGPGLGALT-GWLAQYDVRLTLVEKDGRMIQWLGQQFR 60
Query: 96 ASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ + FH+ D + F ++ ++ G +RIIGNLP VSTPLI K+ A+S
Sbjct: 61 SDRVEL-FHI-DALDFDLRTLY----------GRGPVRIIGNLPHYVSTPLIAKYTAALS 108
>gi|332798095|ref|YP_004459594.1| ribosomal RNA small subunit methyltransferase A [Tepidanaerobacter
acetatoxydans Re1]
gi|438000996|ref|YP_007270739.1| Dimethyladenosine transferase [Tepidanaerobacter acetatoxydans Re1]
gi|332695830|gb|AEE90287.1| Ribosomal RNA small subunit methyltransferase A [Tepidanaerobacter
acetatoxydans Re1]
gi|432177790|emb|CCP24763.1| Dimethyladenosine transferase [Tepidanaerobacter acetatoxydans Re1]
Length = 276
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 17/139 (12%)
Query: 18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARL 77
+K Y ++A K+L Q+FL + R ++ A +EV E+GPG G +T L R R+
Sbjct: 1 MKKYNIKADKRLGQHFLIDSRPLLSMIEAAQLSPEDEVLEIGPGLGVLTLE-LGTRAKRV 59
Query: 78 VLIEKDPRFTPCLDMLAQ--ASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG--IR 133
V +EKD + P LD L + + C + DV+ ++ M SE L G +
Sbjct: 60 VAVEKDRQLIPVLDDLTRDFKNICILE---EDVLKLDLEKM---------SESLFGGRFK 107
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
+I NLP+ ++ P+I+K I+
Sbjct: 108 VIANLPYYITNPIIMKIIE 126
>gi|421619266|ref|ZP_16060227.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas stutzeri KOS6]
gi|409778735|gb|EKN58421.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas stutzeri KOS6]
Length = 264
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y+ RA K+ QNFL + + +I+R G + E+GPG G++T +L+ A L ++
Sbjct: 4 YQHRARKRFGQNFLHDAGVIHRILRAIHAKPGERLVEIGPGQGALTEGLLD-SGAHLDVV 62
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D P L A + GD + F + S+ +RI+GNLP+
Sbjct: 63 ELDLDLIPILQS-KFAGRENFDLNQGDALKFDFSRL---------SDVPNSLRIVGNLPY 112
Query: 141 NVSTPLIIKWI 151
N+STPLI +
Sbjct: 113 NISTPLIFHLL 123
>gi|27151613|sp|Q9RED9.1|RSMA_BURSP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|6687038|emb|CAB64788.1| KsgA, high level kasugamycin resistance protein [Burkholderia sp.]
Length = 277
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR--RPARLVLIEK 82
A K+ Q+FL + + D IV + + E+GPG G++T +L R RL IE
Sbjct: 13 ARKRFGQHFLIDSAVIDAIVSAIAPAPQDCLVEIGPGLGALTWPLLERLGGAGRLHAIEM 72
Query: 83 DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
D L L AS H GD + F + ++ R +RI+GNLP+N+
Sbjct: 73 DRDLAAHLQRLGHASLI---LHAGDALRFDFAQLARAEQAR--------LRIVGNLPYNI 121
Query: 143 STPLIIKWIQAISE 156
S+PL+ + ++E
Sbjct: 122 SSPLLFHLLDEMNE 135
>gi|261208234|ref|ZP_05922907.1| dimethyladenosine transferase [Enterococcus faecium TC 6]
gi|289565965|ref|ZP_06446404.1| dimethyladenosine transferase [Enterococcus faecium D344SRF]
gi|294615973|ref|ZP_06695800.1| dimethyladenosine transferase [Enterococcus faecium E1636]
gi|294617634|ref|ZP_06697262.1| dimethyladenosine transferase [Enterococcus faecium E1679]
gi|430850564|ref|ZP_19468324.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1185]
gi|431682661|ref|ZP_19524624.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1904]
gi|260077491|gb|EEW65209.1| dimethyladenosine transferase [Enterococcus faecium TC 6]
gi|289162249|gb|EFD10110.1| dimethyladenosine transferase [Enterococcus faecium D344SRF]
gi|291591159|gb|EFF22841.1| dimethyladenosine transferase [Enterococcus faecium E1636]
gi|291596098|gb|EFF27363.1| dimethyladenosine transferase [Enterococcus faecium E1679]
gi|430535432|gb|ELA75840.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1185]
gi|430598567|gb|ELB36304.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
faecium E1904]
Length = 294
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K L QNFL EP + KIV A V EVGPG G++T L + ++V E D R
Sbjct: 26 KSLGQNFLTEPNILRKIVETAQIDEHTNVIEVGPGIGALTEQ-LAKHAKQVVAFEIDDRL 84
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P L A + ++ V ++ S R + E LP ++++ NLP+ ++TP+
Sbjct: 85 IPVL-----ADTMQPYDNVTIVHQDILKTDLSTAVRETFHEELP-LKVVANLPYYITTPI 138
Query: 147 IIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQEFGQICLAY 198
++ ++++ +L+ + + + +R +P + Y ++VQ + + LA+
Sbjct: 139 MMHFLES---DLVVDELVVMMQKEVADRISAEPGTKAYGSLSIAVQYYMEANLAF 190
>gi|348618350|ref|ZP_08884878.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
(kasugamycin resistance) [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816397|emb|CCD29592.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
(kasugamycin resistance) [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 275
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR--RPARLVLIEK 82
A K+ Q+FL + + D IV + + E+GPG G++T +L R RL IE
Sbjct: 11 ARKRFGQHFLIDSAVIDAIVSAIAPAPQDCLVEIGPGLGALTWPLLERLGGAGRLHAIEM 70
Query: 83 DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
D L L AS H GD + F + ++ R +RI+GNLP+N+
Sbjct: 71 DRDLAAHLQRLGHASLI---LHAGDALRFDFAQLARAEQAR--------LRIVGNLPYNI 119
Query: 143 STPLIIKWIQAISE 156
S+PL+ + ++E
Sbjct: 120 SSPLLFHLLDEMNE 133
>gi|404372839|ref|ZP_10978121.1| ribosomal RNA small subunit methyltransferase A [Clostridium sp.
7_2_43FAA]
gi|226914216|gb|EEH99417.1| ribosomal RNA small subunit methyltransferase A [Clostridium sp.
7_2_43FAA]
Length = 281
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
+++K Y + K L QNFL + + IV A + V E+GPG G++T +LN +
Sbjct: 10 ELVKKYNFKFSKSLGQNFLIDDSVPRDIVAGAEVDENDLVIEIGPGVGTLTAQLLN-KAK 68
Query: 76 RLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII 135
++V IE D P L+ +P H D + + E++ ++++
Sbjct: 69 KVVAIELDNDLIPILNQEIGDNPKFTLIH-KDALKVNFNEIIGEEK---------SVKLV 118
Query: 136 GNLPFNVSTPLIIKWIQ 152
NLP+ V+TP+I+K ++
Sbjct: 119 ANLPYYVTTPIIVKLLK 135
>gi|110598757|ref|ZP_01387018.1| dimethyladenosine transferase [Chlorobium ferrooxidans DSM 13031]
gi|110339621|gb|EAT58135.1| dimethyladenosine transferase [Chlorobium ferrooxidans DSM 13031]
Length = 261
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 91/188 (48%), Gaps = 31/188 (16%)
Query: 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLV 78
K ++ A K+L QNFL + +T KIV ++G + + E+GPG G++TR I+ P
Sbjct: 7 KHTEIAAKKKLGQNFLTDRNITRKIVASSGATADDNILEIGPGFGALTREIIAICPT-FT 65
Query: 79 LIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138
++EKDP+ L ++ + D + D + G +R++GN+
Sbjct: 66 VVEKDPK----LAAFIRSEYPGLKVLEADFL----------DTDLELLAGEKPLRVLGNI 111
Query: 139 PFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLL---ERACVKPILRPYQLSVQEFGQIC 195
P+++++P++ K ++ H+R + + L ++ + RP S +++G +
Sbjct: 112 PYSITSPILFKLLE----------HRRSFISATLMMQHEVAMRIVARP---STKDYGILA 158
Query: 196 LAYRDMCE 203
+ + C+
Sbjct: 159 VQMQAFCD 166
>gi|118445093|ref|YP_879149.1| dimethyladenosine transferase [Clostridium novyi NT]
gi|118135549|gb|ABK62593.1| dimethyladenosine transferase [Clostridium novyi NT]
Length = 281
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 87/191 (45%), Gaps = 21/191 (10%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
+ +D+++ Y + K L QNFL + + D IV + + V E+GPG G++T+ +L +
Sbjct: 5 TTKDVVQKYNFKFTKSLGQNFLTDQNVLDDIVNGSNVCEEDFVIEIGPGVGTLTKELL-K 63
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
+ ++ +E D P L + P H D + + E++ +
Sbjct: 64 KAKKVCAVELDSELIPILTEELKDFPNFELIH-KDALKVDFNELIGEEK---------SV 113
Query: 133 RIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFG 192
+++ NLP+ V+TP+I + ++ E F + + ER +P + +E+G
Sbjct: 114 KVVANLPYYVTTPIIARLLK---EGYKFKSLTIMIQKEVAERIASEP-------NCKEYG 163
Query: 193 QICLAYRDMCE 203
+ + + C+
Sbjct: 164 ALSILVQYYCD 174
>gi|399046071|ref|ZP_10738608.1| dimethyladenosine transferase [Brevibacillus sp. CF112]
gi|398055856|gb|EJL47906.1| dimethyladenosine transferase [Brevibacillus sp. CF112]
Length = 298
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 17/178 (9%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I++ Y K L QNFL + + IV A E+GPG G++T L R
Sbjct: 16 KEILEKYGFSFKKSLGQNFLVDTNILHNIVAEADLTKDKGAIEIGPGIGALTEQ-LGRAA 74
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++ IE D R P L D L+ V H GDV+ ++ + +E G+ +
Sbjct: 75 GKVMAIEIDQRLLPILQDTLSPYENIEV-VH-GDVLELDLKALIAEK-----FSGVEKLS 127
Query: 134 IIGNLPFNVSTPLIIKWIQAI--SENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
++ NLP+ V+TP+++K ++ EN++ K + ER KP + Y LSV
Sbjct: 128 VVANLPYYVTTPILMKLLEERLPLENIVVMIQK-----EVAERIAAKPGTKDYGSLSV 180
>gi|388259330|ref|ZP_10136503.1| rRNA (adenine-N6,N6)-dimethyltransferase [Cellvibrio sp. BR]
gi|387936768|gb|EIK43326.1| rRNA (adenine-N6,N6)-dimethyltransferase [Cellvibrio sp. BR]
Length = 280
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+++I+ + +A K+ QNFL + + IVR+ +++ E+GPG G+IT+ +L
Sbjct: 3 KNVIQESQHKARKRFGQNFLIDHGIIRDIVRSVHPQKTDQIVEIGPGKGAITQ-LLADSC 61
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
L +IE D P L + + P F D + F + ++ +RI
Sbjct: 62 DNLSVIELDRDLVPWLKVKFEHHPNFKLFQ-ADALQFDFNQLIKNEQ---------PLRI 111
Query: 135 IGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVK 178
+GNLP+N+STPLI +LL +K Q + +L++ VK
Sbjct: 112 VGNLPYNISTPLIF--------HLLTYANKVQDMHFMLQKEVVK 147
>gi|54113937|gb|AAV29602.1| NT02FT1085 [synthetic construct]
Length = 262
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 10/132 (7%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
Y +A K L QNFL + + KIV+ A + V E+GPG G++TR +L+ + ++
Sbjct: 3 YMTKAKKSLGQNFLQDENIIRKIVQLANIKKHDIVVEIGPGLGALTRYLLS-SSNNVSVV 61
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D L Q P H + D + F + ++ + ++ I++IGNLP+
Sbjct: 62 EFDASVIDTLIANCQKYGTP-HIYNQDFLKFDISSLENSSNQK--------IKLIGNLPY 112
Query: 141 NVSTPLIIKWIQ 152
N+S+P++ K I+
Sbjct: 113 NISSPILFKVIK 124
>gi|55980052|ref|YP_143349.1| dimethyladenosine transferase [Thermus thermophilus HB8]
gi|62900482|sp|Q5SM60.1|RSMA_THET8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226192685|pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With Adenosine In Space Group P212121
gi|226192686|pdb|3FUV|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
gi|226192687|pdb|3FUV|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
gi|226192688|pdb|3FUV|C Chain C, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
gi|226192689|pdb|3FUW|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
gi|226192690|pdb|3FUX|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
gi|226192691|pdb|3FUX|B Chain B, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
gi|226192692|pdb|3FUX|C Chain C, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
gi|55771465|dbj|BAD69906.1| dimethyladenosine transferase [Thermus thermophilus HB8]
Length = 271
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
S+R +++ + L A K+ QNFL +IV A TG V EVGPG G++TR++L
Sbjct: 9 SVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEA 67
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
A + IEKD R P L+ S PV D + + W E G
Sbjct: 68 -GAEVTAIEKDLRLRPVLE--ETLSGLPVRLVFQDALLY------------PWEEVPQGS 112
Query: 133 RIIGNLPFNVSTPLIIKWIQ 152
++ NLP++++TPL+ + ++
Sbjct: 113 LLVANLPYHIATPLVTRLLK 132
>gi|30248888|ref|NP_840958.1| dimethyladenosine transferase [Nitrosomonas europaea ATCC 19718]
gi|33516924|sp|Q82W15.1|RSMA_NITEU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|30138505|emb|CAD84795.1| ksgA; dimethyladenosine transferase [Nitrosomonas europaea ATCC
19718]
Length = 257
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 18/125 (14%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILN-RRPARLVLIEKDPR 85
K+ Q+FL + + +I+ + G+ + E+GPG G++T+ +LN +++ I++D
Sbjct: 7 KRFGQHFLVDTSVIAEIIHIIHPVPGDRMIEIGPGLGALTKPLLNVLDELQVIEIDRD-- 64
Query: 86 FTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP 145
+D L++ P + H D + F D+SE G+RIIGNLP+N+STP
Sbjct: 65 ---IVDYLSRTYPGKLVIHNIDALKF------------DFSELGEGLRIIGNLPYNISTP 109
Query: 146 LIIKW 150
L+
Sbjct: 110 LLFHL 114
>gi|363889336|ref|ZP_09316699.1| dimethyladenosine transferase [Eubacteriaceae bacterium CM5]
gi|363893052|ref|ZP_09320192.1| dimethyladenosine transferase [Eubacteriaceae bacterium CM2]
gi|402838006|ref|ZP_10886521.1| dimethyladenosine transferase [Eubacteriaceae bacterium OBRC8]
gi|361961783|gb|EHL14962.1| dimethyladenosine transferase [Eubacteriaceae bacterium CM2]
gi|361966759|gb|EHL19646.1| dimethyladenosine transferase [Eubacteriaceae bacterium CM5]
gi|402274437|gb|EJU23621.1| dimethyladenosine transferase [Eubacteriaceae bacterium OBRC8]
Length = 288
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 98/198 (49%), Gaps = 22/198 (11%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITR 67
L + ++II+ Y + K L QNFL + ++I+ A + V E+G G G++T
Sbjct: 5 LSSAKTTKNIIQKYGFKLTKSLGQNFLINENILNEIIEAADITKDDVVLEIGTGIGTLT- 63
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-S 126
S L R R+V +E D P L+ A + D+++ +++ D + S
Sbjct: 64 SKLCERAKRVVAVEIDKNLLPILNETLSA------YQNIDIIN---KDILKTDINEELKS 114
Query: 127 EGL-PGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQ 185
G+ ++++ NLP+ ++TP+I+K ++ EN+ ++V +L++ I Q
Sbjct: 115 LGINQKVKVVANLPYYITTPIIMKILE---ENV-----NVSVMVLMLQKEVANRI--NAQ 164
Query: 186 LSVQEFGQICLAYRDMCE 203
S +++G + +A + C+
Sbjct: 165 HSTKDYGSLSIAVQYYCD 182
>gi|311028973|ref|ZP_07707063.1| dimethyladenosine transferase [Bacillus sp. m3-13]
Length = 296
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 15/183 (8%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+ Y K L QNFL + + IV E+GPG G++T I +R
Sbjct: 12 KEILDKYGFSFKKSLGQNFLIDTNILRNIVEYGEVSEKTAAIEIGPGIGALTEQI-AKRA 70
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++ E D R P L D L+ V H D++ + + E+ + + E +R
Sbjct: 71 GKVFAFEIDQRLLPILEDTLSPYDNVTV-IH-KDILKADVTELIGEELKA-YEE----VR 123
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQE 190
+I NLP+ V+TP+I+K +Q E L L + ER KP + Y ++VQ
Sbjct: 124 VIANLPYYVTTPIIMKLLQ---EGLPLKSITVMLQKEVAERMAAKPGTKEYGSLSIAVQY 180
Query: 191 FGQ 193
F Q
Sbjct: 181 FTQ 183
>gi|238917939|ref|YP_002931456.1| dimethyladenosine transferase [Eubacterium eligens ATCC 27750]
gi|238873299|gb|ACR73009.1| dimethyladenosine transferase [Eubacterium eligens ATCC 27750]
Length = 293
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 11/139 (7%)
Query: 17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPAR 76
++ Y K+ QNFL + + +KIVR AG + V EVGPG G++T+ IL
Sbjct: 21 VLNRYGFDFKKKFGQNFLIDENVVEKIVREAGVTKDDFVVEVGPGIGTMTQ-ILCENARE 79
Query: 77 LVLIEKDPRFTPCL--DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
+V +E D + P L D L+ V D++ ++ + E +EG P I++
Sbjct: 80 VVAVEIDKKLIPILTEDTLSYYDNVTVINE--DILKLDIKKLADEK-----NEGRP-IKV 131
Query: 135 IGNLPFNVSTPLIIKWIQA 153
+ NLP+ ++TP+I+ ++
Sbjct: 132 VANLPYYITTPIIMGLFES 150
>gi|406938496|gb|EKD71713.1| hypothetical protein ACD_46C00114G0002 [uncultured bacterium]
Length = 260
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 25/179 (13%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K+ Q+FL + + +IV + + + E+GPG G++T IL R +L +IE D
Sbjct: 6 KRFGQHFLSDQHIIQRIVAALAPTSHDHLVEIGPGQGALTVPIL-RAAKQLDVIELDRDL 64
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P L+ +H H DV+ F + ++R+ +RI GNLP+N+STPL
Sbjct: 65 IPELERRTHHD-GRLHIHSADVLEFDFAAIKKDERQ---------LRIFGNLPYNISTPL 114
Query: 147 IIKWIQA--ISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCE 203
+ + I ++LF K + ER K + + +G++ + + CE
Sbjct: 115 LFHLLDYAPIISDMLFMLQK-----EVAERLAAKA-------NTEHYGRLSVMMQYCCE 161
>gi|320095741|ref|ZP_08027390.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319977327|gb|EFW09021.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 301
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R I +R K L QNF+ + +IV AG G+EV EVGPG GS+T ++L
Sbjct: 3 VRAISGALGIRPTKALGQNFVHDAGTVRRIVAAAGVGEGDEVIEVGPGLGSLTLALLE-A 61
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
AR+ +E DP L +A L V + D DW P +
Sbjct: 62 GARVRAVEIDPVLAAALPETVRARMGGAADRLHVVTADATAITGPADLGPDWP---PPAK 118
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV---SLLERACVKPILRPYQL 186
++ NLP+NV+ P+++ + + FP LV+ + +R P R Y +
Sbjct: 119 LVANLPYNVAVPVLLAMLDS------FPTLTDVLVMVQAEVADRLAAGPGSRTYGV 168
>gi|226192683|pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
gi|226192684|pdb|3FUT|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
Length = 271
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
S+R +++ + L A K+ QNFL +IV A TG V EVGPG G++TR++L
Sbjct: 9 SVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEA 67
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
A + IEKD R P L+ S PV D + + W E G
Sbjct: 68 -GAEVTAIEKDLRLRPVLE--ETLSGLPVRLVFQDALLY------------PWEEVPQGS 112
Query: 133 RIIGNLPFNVSTPLIIKWIQ 152
++ NLP++++TPL+ + ++
Sbjct: 113 LLVANLPYHIATPLVTRLLK 132
>gi|433544148|ref|ZP_20500538.1| dimethyladenosine transferase [Brevibacillus agri BAB-2500]
gi|432184504|gb|ELK42015.1| dimethyladenosine transferase [Brevibacillus agri BAB-2500]
Length = 298
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 17/178 (9%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I++ Y K L QNFL + + IV A E+GPG G++T L R
Sbjct: 16 KEILEKYGFSFKKSLGQNFLVDTNILHNIVAEADLTKDKGAIEIGPGIGALTEQ-LGRAA 74
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++ IE D R P L D L+ V H GDV+ ++ + +E G+ +
Sbjct: 75 GKVMAIEIDQRLLPILQDTLSPYENIEV-VH-GDVLELDLKALIAEKL-----SGVEKLS 127
Query: 134 IIGNLPFNVSTPLIIKWIQAI--SENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
++ NLP+ V+TP+++K ++ EN++ K + ER KP + Y LSV
Sbjct: 128 VVANLPYYVTTPILMKLLEERLPLENIVVMIQK-----EVAERIAAKPGTKDYGSLSV 180
>gi|377808877|ref|YP_005004098.1| dimethyladenosine transferase [Pediococcus claussenii ATCC BAA-344]
gi|361055618|gb|AEV94422.1| dimethyladenosine transferase [Pediococcus claussenii ATCC BAA-344]
Length = 297
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R I++ Y L A K L QNFL +P + I AG ++V EVGPG G++T L RR
Sbjct: 14 RAILEEYGLSAKKSLGQNFLTDPNVLINIAIAAGIDNEDDVIEVGPGIGALTEQ-LARRA 72
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++ E D L D LA+ V DV+ + N SE + +G ++
Sbjct: 73 HQVLAFEIDQNLLDVLDDTLAEYKNVTVLNQ--DVLKANLPNEISE-----YFDGKHHLK 125
Query: 134 IIGNLPFNVSTPLI 147
++ NLP+ ++TP++
Sbjct: 126 MVANLPYYITTPIL 139
>gi|297621735|ref|YP_003709872.1| dimethyladenosine transferase [Waddlia chondrophila WSU 86-1044]
gi|297377036|gb|ADI38866.1| dimethyladenosine transferase [Waddlia chondrophila WSU 86-1044]
gi|337292724|emb|CCB90731.1| Ribosomal RNA small subunit methyltransferase A [Waddlia
chondrophila 2032/99]
Length = 283
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 81/151 (53%), Gaps = 16/151 (10%)
Query: 1 MAAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGP 60
M + LRL +R +++ + K LSQNFL + + DKI+ A ++V E+GP
Sbjct: 5 MTSNPLRLSNPSQLRQYLEILGISPKKSLSQNFLIDGNIIDKIISLAEINAQDQVLEIGP 64
Query: 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120
GPG++T + L++ AR++ +EKD +LA+A + GD+ +++ D
Sbjct: 65 GPGALTDA-LHQHGARVLAVEKD-------RILAKA----LQERGGDI-RVICEDVLKVD 111
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWI 151
++ SE +I NLP+N+++P++ +
Sbjct: 112 LEKELSE---RATVIANLPYNITSPILTSLL 139
>gi|152995082|ref|YP_001339917.1| dimethyladenosine transferase [Marinomonas sp. MWYL1]
gi|189028811|sp|A6VU53.1|RSMA_MARMS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|150836006|gb|ABR69982.1| dimethyladenosine transferase [Marinomonas sp. MWYL1]
Length = 266
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 14/136 (10%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K+ QNFL + + +IV G G + E+GPG G++T I++ R+ ++E D
Sbjct: 8 KARKRFGQNFLHDHGVIRRIVACIGPKKGQRIVEIGPGKGALTEGIIS-VTERMDVVELD 66
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L + P + H D M F ++ + ++ IR++GNLP+N+S
Sbjct: 67 RDLIPILKVNLFRFP-ELTVHEADAMKFDFTSLTTPEQ---------AIRVVGNLPYNIS 116
Query: 144 TPLIIKWI---QAISE 156
TPLI + QAI +
Sbjct: 117 TPLIFHLLSQAQAIED 132
>gi|326794309|ref|YP_004312129.1| ribosomal RNA small subunit methyltransferase A [Marinomonas
mediterranea MMB-1]
gi|326545073|gb|ADZ90293.1| Ribosomal RNA small subunit methyltransferase A [Marinomonas
mediterranea MMB-1]
Length = 266
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K+ QNFL + + +IV G V E+GPG G++T I++ + + ++E D
Sbjct: 8 KARKRFGQNFLHDMGIIRRIVACIAPKEGQRVVEIGPGKGALTEGIISATKS-MDVVELD 66
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
P L + P + H D M F D R+ +EG IR++GNLP+N+S
Sbjct: 67 RDLIPILKVNLFKYP-DLRVHEADAMKF--------DFRQLATEG--NIRVVGNLPYNIS 115
Query: 144 TPLIIKWIQ 152
TPLI ++
Sbjct: 116 TPLIFHLLE 124
>gi|89898507|ref|YP_515617.1| dimethyladenosine transferase [Chlamydophila felis Fe/C-56]
gi|119365014|sp|Q253R6.1|RSMA_CHLFF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|89331879|dbj|BAE81472.1| dimethyladenosine transferase [Chlamydophila felis Fe/C-56]
Length = 284
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 16/124 (12%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K LSQNFL + + KI+ + G+ V E+GPG G++T ++N + A +V +EKDP F
Sbjct: 28 KGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVN-QGAHVVALEKDPMF 86
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEGLPGIRIIGNLPFNVSTP 145
L L P+ + D + + S+ + + W +G R++ NLP++++TP
Sbjct: 87 EETLKQL------PIDLEITDACKYPL----SQLQEKGWQGKG----RVVANLPYHITTP 132
Query: 146 LIIK 149
L+ K
Sbjct: 133 LLTK 136
>gi|257868862|ref|ZP_05648515.1| dimethyladenosine transferase [Enterococcus gallinarum EG2]
gi|357049741|ref|ZP_09110957.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
saccharolyticus 30_1]
gi|257803026|gb|EEV31848.1| dimethyladenosine transferase [Enterococcus gallinarum EG2]
gi|355382870|gb|EHG29963.1| ribosomal RNA small subunit methyltransferase A [Enterococcus
saccharolyticus 30_1]
Length = 300
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 9/140 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+ + K L QNFL EP + KIV A V EVGPG G++T L +
Sbjct: 14 KEILAKHGFTFKKSLGQNFLTEPNILRKIVATAAIDDQTNVIEVGPGIGALTEQ-LAKHA 72
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++ E D R P L D LA S V H DV+ + M R +++ P I+
Sbjct: 73 RQVLAFEIDDRLIPVLQDTLAPYSNIQV-IH-QDVLQADLSTMI----REAFTDERP-IK 125
Query: 134 IIGNLPFNVSTPLIIKWIQA 153
++ NLP+ ++TP+++ ++++
Sbjct: 126 VVANLPYYITTPIMMHFLES 145
>gi|168187487|ref|ZP_02622122.1| dimethyladenosine transferase [Clostridium botulinum C str. Eklund]
gi|169294621|gb|EDS76754.1| dimethyladenosine transferase [Clostridium botulinum C str. Eklund]
Length = 281
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 87/191 (45%), Gaps = 21/191 (10%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
+ +D+++ Y + K L QNFL + + D IV + + V E+GPG G++T+ +L +
Sbjct: 5 TTKDVVQKYNFKFTKSLGQNFLTDQNVLDDIVNGSNVCEEDFVIEIGPGVGTLTKELL-K 63
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
+ R+ IE D P L + P H D + + +++ +
Sbjct: 64 KAKRVCAIELDSDLIPILTEELKDFPNFKLIH-KDALKVDFNEIIGDEK---------SV 113
Query: 133 RIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFG 192
+++ NLP+ V+TP+I + ++ E F + + ER +P + +E+G
Sbjct: 114 KVVANLPYYVTTPIIARLLK---EGYKFKSLTIMIQKEVAERIASEP-------NCKEYG 163
Query: 193 QICLAYRDMCE 203
+ + + C+
Sbjct: 164 ALSILVQYYCD 174
>gi|374851883|dbj|BAL54830.1| dimethyladenosine transferase [uncultured candidate division OP1
bacterium]
gi|374855735|dbj|BAL58590.1| dimethyladenosine transferase [uncultured candidate division OP1
bacterium]
Length = 293
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 16/142 (11%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
IRDI+ +K+R K L Q+FL + + KI A + V E+G G G++T+ L +R
Sbjct: 9 IRDILAQHKIRLKKSLGQHFLVDENILKKIAEAAQLSPEDTVVEIGAGVGTLTQE-LAQR 67
Query: 74 PARLVLIEKDPRFTPCL--DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
R++ +E D R P L + A+ V D + F + + +
Sbjct: 68 AGRVIAVEIDSRLIPLLTEHLRPYANVVVVQ---QDFLQFDLHAVAPRQK---------- 114
Query: 132 IRIIGNLPFNVSTPLIIKWIQA 153
+ I+GNLP+NV+ P++ K ++A
Sbjct: 115 LAIVGNLPYNVTAPILEKLVEA 136
>gi|23097505|ref|NP_690971.1| dimethyladenosine transferase [Oceanobacillus iheyensis HTE831]
gi|27151561|sp|P59155.1|RSMA_OCEIH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|22775728|dbj|BAC12006.1| dimethyladenosine transferase (16S rRNA dimethylase)
[Oceanobacillus iheyensis HTE831]
Length = 294
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+DI+ Y K L QNFL + + I+R+AG E+GPG G++T L
Sbjct: 14 KDILGKYHFTFKKSLGQNFLVDVSVLQNIIRHAGITKDTAAIEIGPGIGALTEQ-LAIHA 72
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
++V E D R P L D L + S V H D++ + + E + EG +
Sbjct: 73 DQVVAFEIDQRLLPILQDTLGEYSNVSV-IH-QDILKADVTKVIDE----HFKEG-QEVH 125
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ ++TP+++K I+
Sbjct: 126 VVANLPYYITTPILMKLIR 144
>gi|339006655|ref|ZP_08639230.1| ribosomal RNA methyltransferase [Brevibacillus laterosporus LMG
15441]
gi|338775864|gb|EGP35392.1| ribosomal RNA methyltransferase [Brevibacillus laterosporus LMG
15441]
Length = 295
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R+II+ Y K L QNFL + + I+ A V E+GPG G++T L R
Sbjct: 15 REIIEKYGFSLKKSLGQNFLTDINILHNIIDAAELSKDKAVIEIGPGIGALTEQ-LCRAA 73
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++ IE D R P L D L+ V H GDV+ + + +E G G+
Sbjct: 74 GKVMAIEIDQRLLPILEDTLSPYDNITV-VH-GDVLKLDVAALIAE-----HLSGCSGVS 126
Query: 134 IIGNLPFNVSTPLIIKWIQA 153
++ NLP+ V+TP+++ +++
Sbjct: 127 VVANLPYYVTTPILMGLLES 146
>gi|402835685|ref|ZP_10884248.1| dimethyladenosine transferase [Mogibacterium sp. CM50]
gi|402273967|gb|EJU23157.1| dimethyladenosine transferase [Mogibacterium sp. CM50]
Length = 306
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 76/142 (53%), Gaps = 17/142 (11%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE--VCEVGPGPGSITRSILNRRPARLV 78
+ + K L QNFL + + D IV AG++ + V EVGPG G++T S L ++
Sbjct: 35 HGFKHAKSLGQNFLNDQNVIDDIV--AGSLIDEQTLVIEVGPGEGALT-SELVEVAGYVI 91
Query: 79 LIEKDPRFTPCLDMLAQASPCPVHFHL----GDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
IE D R P L + +H + GD++ ++++ ++ R+ L R+
Sbjct: 92 AIELDDRLIPIL-----RTKFALHDNFEVIHGDILKADIESIVNDAMRK---HDLTRTRV 143
Query: 135 IGNLPFNVSTPLIIKWIQAISE 156
+GNLP+ ++TP+IIK I++ +E
Sbjct: 144 VGNLPYYITTPIIIKLIESKAE 165
>gi|218666666|ref|YP_002424676.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC
23270]
gi|254807853|sp|B7J3R3.1|RSMA_ACIF2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|218518879|gb|ACK79465.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 267
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL +P++ ++IV +G+ + E+GPGPG++T+S+L P + ++E D
Sbjct: 8 RAKKRFGQNFLVQPQIVERIVAAIRPASGDHLVEIGPGPGALTKSLLRLLP-QFTVVELD 66
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L L A P + D + + +RI+GNLP+NV+
Sbjct: 67 RDMIAGLRAL--APPEQLRVLQADALEVDFAALAGAGNA---------LRIVGNLPYNVA 115
Query: 144 TPLIIKWIQ 152
TPLI ++
Sbjct: 116 TPLIFHILE 124
>gi|335357755|ref|ZP_08549625.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus animalis KCTC 3501]
Length = 298
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 12/151 (7%)
Query: 7 RLPPMPS---IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPG 63
+LP + S R I++ Y L K L QNFL + + +KIV A ++V E+GPG G
Sbjct: 4 QLPEIASPTRTRAIMESYGLTFKKSLGQNFLTDINILNKIVAAAEVTPEDDVIEIGPGIG 63
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRR 122
++T L + +++ +E D R P L D LA V DV+ + + +++
Sbjct: 64 ALTEQ-LAKNAHQVMALEIDDRLIPVLADTLAPYDNVTVVHQ--DVLKADLVELIAKN-- 118
Query: 123 RDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153
+G I+++ NLP+ ++TP+I+ ++A
Sbjct: 119 ---FDGKHKIKLVANLPYYITTPIILHLLEA 146
>gi|126654253|ref|ZP_01726041.1| dimethyladenosine transferase [Bacillus sp. B14905]
gi|126589286|gb|EAZ83444.1| dimethyladenosine transferase [Bacillus sp. B14905]
Length = 294
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 11/140 (7%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL +P + IV +A + EVGPG G++T L R
Sbjct: 13 QEILKKYGFSFKKSLGQNFLIDPNILRNIVSHADLTENSGAIEVGPGIGALTEH-LARSA 71
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
++V E D R P L D L+ + VH D++ + + +E+ G+ I
Sbjct: 72 KKVVSFEIDQRLLPVLEDTLSPYNNVSIVH---SDILKADVAKVIAEEML-----GIEDI 123
Query: 133 RIIGNLPFNVSTPLIIKWIQ 152
++ NLP+ V+TP+++K +
Sbjct: 124 MVVANLPYYVTTPILMKLLN 143
>gi|198282486|ref|YP_002218807.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|226729745|sp|B5EL84.1|RSMA_ACIF5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|198247007|gb|ACH82600.1| dimethyladenosine transferase [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 268
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
RA K+ QNFL +P++ ++IV +G+ + E+GPGPG++T+S+L P + ++E D
Sbjct: 9 RAKKRFGQNFLVQPQIVERIVAAIRPASGDHLVEIGPGPGALTKSLLRLLP-QFTVVELD 67
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L L A P + D + + +RI+GNLP+NV+
Sbjct: 68 RDMIAGLRAL--APPEQLRVLQADALEVDFAALAGAGNA---------LRIVGNLPYNVA 116
Query: 144 TPLIIKWIQ 152
TPLI ++
Sbjct: 117 TPLIFHILE 125
>gi|357404485|ref|YP_004916409.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
[Methylomicrobium alcaliphilum 20Z]
gi|351717150|emb|CCE22815.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
[Methylomicrobium alcaliphilum 20Z]
Length = 262
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 19/168 (11%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K+ QNFL + + ++I+ N G E+GPG G++T +L+ RL ++E D
Sbjct: 4 KARKRFGQNFLTDYSIIEEILGNIQVRPGEHWVEIGPGQGALTAPLLD-HAIRLDIVELD 62
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L + H D +SF Q + ++G P +RIIGNLP+N+S
Sbjct: 63 RDLVSLLKK-KFGDNERLTIHSADALSFDFQAL--------AADGKP-LRIIGNLPYNIS 112
Query: 144 TPLIIKWIQAIS--ENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
TPL+ +++ S ++ F K +++R C +P + Y +LSV
Sbjct: 113 TPLLFHLLESTSCIADMHFMLQKE-----VVDRICAEPGSKKYGRLSV 155
>gi|405754270|ref|YP_006677734.1| dimethyladenosine transferase [Listeria monocytogenes SLCC2540]
gi|404223470|emb|CBY74832.1| dimethyladenosine transferase [Listeria monocytogenes SLCC2540]
Length = 295
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
+I+K Y K L QNFL + + +I A V E+GPG G++T L +
Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQ-LAKTAN 71
Query: 76 RLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII 135
+V E D R P LD A H GDV+ ++ + +E + LP ++I+
Sbjct: 72 EVVAFEIDQRLLPILDDTLSAYNNIQVVH-GDVLKADVEEVIAEQFAK---PDLP-LKIV 126
Query: 136 GNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQEFG 192
NLP+ V+TP+I+K + +N+ L + +R P + Y +++Q +
Sbjct: 127 ANLPYYVTTPIILKLLH---DNIPADSMTFMLQKEVADRISAAPSTKSYGSLTIAIQFYM 183
Query: 193 QICLAY 198
+ LA+
Sbjct: 184 EAELAF 189
>gi|380509563|ref|ZP_09852970.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Xanthomonas sacchari NCPPB 4393]
Length = 264
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 16/129 (12%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP 84
A K L Q+FL + D IVR G+ + E+GPG G+IT +L RR RL +IE D
Sbjct: 11 AKKSLGQHFLSDRHYIDSIVRAVDPKPGDRLVEIGPGQGAITFPLL-RRHGRLTVIEFD- 68
Query: 85 RFTPCLDMLAQASPCPVHFHLGDVMSFTMQN--MFSEDRRRDWSEGLPGIRIIGNLPFNV 142
D++A P+ DV T+ N + S D +EG P IR++GNLP+N+
Sbjct: 69 -----RDLIA-----PLTAAAADVGELTIINRDVLSVDFAA-LAEGTP-IRLVGNLPYNI 116
Query: 143 STPLIIKWI 151
S+P++ +
Sbjct: 117 SSPILFHAL 125
>gi|342216161|ref|ZP_08708808.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341587051|gb|EGS30451.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 287
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 12/143 (8%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RL +I++I+ + K L QNFL + IV+ +G + V E+GPG G++T
Sbjct: 5 RLYTPSTIKEILNRHGFTMTKALGQNFLIDGNTVRGIVQGSGVTKEDRVLEIGPGIGTLT 64
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
L ++ +EKD R P L+ A V GD + D +++W
Sbjct: 65 EE-LALEAKSVLAVEKDQRLKPILEE-TMADYDNVEILFGDALKL--------DLKKEWE 114
Query: 127 E--GLPGIRIIGNLPFNVSTPLI 147
+ G + I+ NLP+ V+TP++
Sbjct: 115 DRFGQDPVHIVANLPYYVTTPIL 137
>gi|332686219|ref|YP_004455993.1| dimethyladenosine transferase [Melissococcus plutonius ATCC 35311]
gi|332370228|dbj|BAK21184.1| dimethyladenosine transferase [Melissococcus plutonius ATCC 35311]
Length = 294
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++I+K Y K L QNFL EP + KIV A V EVGPG G++T L ++
Sbjct: 14 KEILKKYDFSLKKSLGQNFLTEPNILKKIVATANLTKEVNVIEVGPGIGALTEQ-LAQQA 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
+++ E D L A + ++ V ++ ++ + + + P I+I
Sbjct: 73 GQVLAFEIDHNLIRIL-----ADTLQPYNNITIVNQDVLKTDLVKETQAVFQQAYP-IKI 126
Query: 135 IGNLPFNVSTPLIIKWIQA--ISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQ 189
+ NLP+ ++TP+++ ++Q+ I E ++ K + +R KP + Y ++VQ
Sbjct: 127 VANLPYYITTPILMYFLQSDLIVEEMVVMMQKE-----VADRISAKPGTKAYGSLSIAVQ 181
Query: 190 EFGQICLAY 198
F + +A+
Sbjct: 182 YFMEATIAF 190
>gi|251778936|ref|ZP_04821856.1| dimethyladenosine transferase [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243083251|gb|EES49141.1| dimethyladenosine transferase [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 283
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 20/173 (11%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++++K Y R K L QNFL + + + IV A + + E+GPG G++T +L ++
Sbjct: 9 KELVKKYNFRFSKSLGQNFLLDESVLNDIVDGAEVNENDFIIEIGPGVGTLTAKLL-QKA 67
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG--- 131
R+ IE D P L LG+ F + + ++ + D++E +
Sbjct: 68 KRVTCIELDNDLIPILQQ-----------ELGEYDKFEL--IHNDALKVDFNEIMKNEEH 114
Query: 132 IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY 184
++++ NLP+ V+TP+I+K ++ EN F + + ER +P + Y
Sbjct: 115 VKLVANLPYYVTTPIIVKLLK---ENHKFESLTIMIQKEVAERINAEPNCKEY 164
>gi|29840068|ref|NP_829174.1| dimethyladenosine transferase [Chlamydophila caviae GPIC]
gi|33301245|sp|Q823V2.1|RSMA_CHLCV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|29834416|gb|AAP05052.1| dimethyladenosine transferase [Chlamydophila caviae GPIC]
Length = 278
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 16/127 (12%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
R K LSQNFL + + KI+ + G+ V E+GPG G++T ++N + A +V +EKD
Sbjct: 19 RPKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVN-QGAHVVALEKD 77
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW-SEGLPGIRIIGNLPFNV 142
P F L L P+ + D + + S+ + W +G R++ NLP+++
Sbjct: 78 PMFEETLKQL------PIDLEITDACKYPL----SQLEEKGWQGKG----RVVANLPYHI 123
Query: 143 STPLIIK 149
+TPL+ K
Sbjct: 124 TTPLLTK 130
>gi|259048129|ref|ZP_05738530.1| dimethyladenosine transferase [Granulicatella adiacens ATCC 49175]
gi|259035190|gb|EEW36445.1| dimethyladenosine transferase [Granulicatella adiacens ATCC 49175]
Length = 289
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 17/194 (8%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R+I++ + L K L QNFL EP + +++ AG V E+GPG G++T L R
Sbjct: 14 REIMERHGLTVKKSLGQNFLIEPNILTRMLEVAGVDKTTNVIEIGPGIGALTER-LAREA 72
Query: 75 ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134
+++ E D R P LD H D++ ++ + E D +E L +
Sbjct: 73 KQVLAFEIDGRLLPVLDETLAPYDNVTVVH-SDILDVDLEQVIGE--HFDINEPL---LV 126
Query: 135 IGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQI 194
+ NLP+ ++TP+I+ +++ L + + +R +P + Y G +
Sbjct: 127 VANLPYYITTPIIMNLLES---KLPIDGFAMMMQKEVAQRMTAEPNSKAY-------GSL 176
Query: 195 CLAYRDMCEEMPGL 208
+A + CE G
Sbjct: 177 TIAIQYFCEASIGF 190
>gi|116750733|ref|YP_847420.1| dimethyladenosine transferase [Syntrophobacter fumaroxidans MPOB]
gi|116699797|gb|ABK18985.1| dimethyladenosine transferase [Syntrophobacter fumaroxidans MPOB]
Length = 285
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSI 69
P P+ R +L R K+ Q+FL ++IVR A + V E+GPG G++TR I
Sbjct: 5 PFPTPRQYFRLRDTRPRKRFGQHFLDHSATAEQIVRCAEFDASDTVVEIGPGLGALTRFI 64
Query: 70 LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129
L ARL L+E D L+ A V H D ++F N +E + G
Sbjct: 65 LP-LAARLHLVELDRDLATYLEENLPAG-SQVRLHRQDAVTFDF-NALAE------AAGQ 115
Query: 130 PGIRIIGNLPFNVSTPLIIKWIQAI 154
P + ++GNLP+N+++PL+ + ++
Sbjct: 116 PLV-VLGNLPYNITSPLLFHLLDSV 139
>gi|337755793|ref|YP_004648304.1| dimethyladenosine transferase [Francisella sp. TX077308]
gi|336447398|gb|AEI36704.1| Dimethyladenosine transferase [Francisella sp. TX077308]
Length = 262
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 10/132 (7%)
Query: 21 YKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLI 80
YK +A K L QNFL + + KIV+ A + V E+GPG G++TR IL + ++
Sbjct: 3 YKTKAKKSLGQNFLQDENIIRKIVQLANIKKDDMVLEIGPGLGALTRYILT-YSNHVSVV 61
Query: 81 EKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140
E D L Q P F+ D + F + + E +++ I+++GNLP+
Sbjct: 62 EFDASVIDTLLQNCQKYGEPKIFN-EDFLKFNLDILRVEHQQK--------IKLLGNLPY 112
Query: 141 NVSTPLIIKWIQ 152
N+S+P++ K I+
Sbjct: 113 NISSPILFKVIE 124
>gi|339064072|ref|ZP_08649201.1| Dimethyladenosine transferase [gamma proteobacterium IMCC2047]
gi|330719898|gb|EGG98373.1| Dimethyladenosine transferase [gamma proteobacterium IMCC2047]
Length = 155
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K+ QNFL + + I+ + + + E+GPG G+IT +L L ++E D
Sbjct: 8 QARKRFGQNFLQDQNIIRNILLSINPKADDNIAEIGPGLGAITEHLLKATNGHLNVVEID 67
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143
L P ++ H GD + F + + D+ +RI+GNLP+N+S
Sbjct: 68 RDLVQVLKTQFFNYP-ELNIHQGDALKFDFSQLVASDQ-----SDTQKLRIVGNLPYNIS 121
Query: 144 TPLIIK 149
TPLI +
Sbjct: 122 TPLIFQ 127
>gi|270290912|ref|ZP_06197136.1| dimethyladenosine transferase [Pediococcus acidilactici 7_4]
gi|304386409|ref|ZP_07368742.1| dimethyladenosine transferase [Pediococcus acidilactici DSM 20284]
gi|418068507|ref|ZP_12705789.1| dimethyladenosine transferase [Pediococcus acidilactici MA18/5M]
gi|427441756|ref|ZP_18925413.1| dimethyladenosine transferase [Pediococcus lolii NGRI 0510Q]
gi|270280972|gb|EFA26806.1| dimethyladenosine transferase [Pediococcus acidilactici 7_4]
gi|304327766|gb|EFL94993.1| dimethyladenosine transferase [Pediococcus acidilactici DSM 20284]
gi|357539243|gb|EHJ23262.1| dimethyladenosine transferase [Pediococcus acidilactici MA18/5M]
gi|425786945|dbj|GAC46201.1| dimethyladenosine transferase [Pediococcus lolii NGRI 0510Q]
Length = 297
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R I++ Y L A K L QNFL +P + IV A G++V EVGPG GS+T I +R
Sbjct: 14 RAILEKYGLSAKKSLGQNFLTDPNVLVNIVDAAEINDGDDVIEVGPGIGSLTEQIA-KRA 72
Query: 75 ARLVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++ E D P LD LA + DV+ + + +E +G I+
Sbjct: 73 HQVLAFEIDQNLIPVLDETLAPYDNITIINE--DVLKVNVNEVVAEH-----FDGQHPIK 125
Query: 134 IIGNLPFNVSTPLI 147
++ NLP+ ++TP++
Sbjct: 126 LVANLPYYITTPIL 139
>gi|39996962|ref|NP_952913.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Geobacter
sulfurreducens PCA]
gi|62900555|sp|Q74C12.1|RSMA_GEOSL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|39983850|gb|AAR35240.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase
[Geobacter sulfurreducens PCA]
Length = 276
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
+RA K L QNFL + + +I G + E+GPG G++T S L + +LV +E
Sbjct: 6 IRARKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALT-SYLAEQAGQLVAVEL 64
Query: 83 DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
D R P L +P V GD++ ++ G P ++ NLP+N+
Sbjct: 65 DDRLVPLLRGSFAGNPS-VTIIEGDILDLDLRETLGR-------YGTPPWKVAANLPYNI 116
Query: 143 STPLIIKWIQA 153
STP++ + + A
Sbjct: 117 STPVLFRLLDA 127
>gi|421874161|ref|ZP_16305768.1| dimethyladenosine transferase [Brevibacillus laterosporus GI-9]
gi|372456816|emb|CCF15317.1| dimethyladenosine transferase [Brevibacillus laterosporus GI-9]
Length = 292
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
R+II+ Y K L QNFL + + I+ A V E+GPG G++T L R
Sbjct: 15 REIIEKYGFSLKKSLGQNFLTDINILHNIIDAAELSKDKAVIEIGPGIGALTEQ-LCRVA 73
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+++ IE D R P L D L+ V H GDV+ + + +E G G+
Sbjct: 74 GKVMAIEIDQRLLPILEDTLSPYDNITV-VH-GDVLKLDVAALIAE-----HLSGCSGVS 126
Query: 134 IIGNLPFNVSTPLIIKWIQA 153
++ NLP+ V+TP+++ +++
Sbjct: 127 VVANLPYYVTTPILMGLLES 146
>gi|217965726|ref|YP_002351404.1| dimethyladenosine transferase [Listeria monocytogenes HCC23]
gi|386006917|ref|YP_005925195.1| dimethyladenosine transferase [Listeria monocytogenes L99]
gi|386025497|ref|YP_005946273.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
(16S rRNA methylation) [Listeria monocytogenes M7]
gi|254807872|sp|B8DGN7.1|RSMA_LISMH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|217334996|gb|ACK40790.1| dimethyladenosine transferase [Listeria monocytogenes HCC23]
gi|307569727|emb|CAR82906.1| dimethyladenosine transferase [Listeria monocytogenes L99]
gi|336022078|gb|AEH91215.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
(16S rRNA methylation) [Listeria monocytogenes M7]
Length = 295
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 10/139 (7%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
+I+K Y K L QNFL + + +I A V E+GPG G++T L +
Sbjct: 13 EILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQ-LAKTAN 71
Query: 76 RLVLIEKDPRFTPCLD--MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+V E D R P LD + A ++ VH GDV+ ++ + +E + LP ++
Sbjct: 72 EVVAFEIDQRLLPILDDTLSAYSNVQVVH---GDVLKADVEEVVAEQFAK---PELP-LK 124
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
I+ NLP+ V+TP+I+K +
Sbjct: 125 IVANLPYYVTTPIILKLLH 143
>gi|390457070|ref|ZP_10242598.1| dimethyladenosine transferase [Paenibacillus peoriae KCTC 3763]
Length = 294
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
++II+ + K L QNFL + + +KIV AG E+GPG G++T L +
Sbjct: 14 KEIIQRHGFSFKKSLGQNFLIDQNILNKIVSAAGLDDTKGALEIGPGIGALTEK-LAQSA 72
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
+ +E D R P L ++LA V GDV+ ++ +F+ D++E + +
Sbjct: 73 KVVTAVEIDQRLLPILGEVLAPYEHVKVRH--GDVLKLDLREVFAS----DFAE-VSKVS 125
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
++ NLP+ V+TP++++ ++
Sbjct: 126 VVANLPYYVTTPILMRLLE 144
>gi|293189141|ref|ZP_06607867.1| dimethyladenosine transferase [Actinomyces odontolyticus F0309]
gi|292821986|gb|EFF80919.1| dimethyladenosine transferase [Actinomyces odontolyticus F0309]
Length = 328
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 15/177 (8%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
++ I + +R K L QNF+ + KIV G G+EV EVGPG GS+T ++L
Sbjct: 37 VKAISEALGIRPTKVLGQNFVHDAGTVRKIVAAGGVEAGDEVVEVGPGLGSLTLALLE-V 95
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG-I 132
AR+ +E DP L +A L V + +D DW P
Sbjct: 96 GARVRAVEIDPTLAAALPQTVRARMSEAADRLHVVTMDATEISGIDDFGVDW----PAPT 151
Query: 133 RIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV---SLLERACVKPILRPYQL 186
+++ NLP+NV+ P+++ ++A FP + +V+ + +R P R Y +
Sbjct: 152 KLVANLPYNVAVPVLLNMLEA------FPSVQGVVVMVQAEVADRLAAGPGSRTYGV 202
>gi|46200223|ref|YP_005890.1| dimethyladenosine transferase [Thermus thermophilus HB27]
gi|62900548|sp|Q72GC7.1|RSMA_THET2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|46197851|gb|AAS82263.1| dimethyladenosine transferase [Thermus thermophilus HB27]
Length = 271
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
S+R +++ + L A K+ QNFL +IV A TG V EVGPG G++TR++L
Sbjct: 9 SVRALLERHGLFADKRFGQNFLVSEVHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEA 67
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
A + IEKD R P L+ S PV D + + W E G
Sbjct: 68 G-AEVTAIEKDLRLRPVLE--ETLSGLPVRLVFQDALLY------------PWEEVPQGS 112
Query: 133 RIIGNLPFNVSTPLIIKWIQ 152
++ NLP++++TPL+ + ++
Sbjct: 113 LLVANLPYHIATPLVTRLLK 132
>gi|315604977|ref|ZP_07880031.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315313256|gb|EFU61319.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 329
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R I + +R K L QNF+ + +IV G+EV EVGPG GS+T ++L
Sbjct: 38 VRAISEALGIRPTKVLGQNFVHDAGTVRRIVAAGDVRAGDEVVEVGPGLGSLTLALLEVG 97
Query: 74 PARLVLIEKDPRFTPCL--DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
AR+ +E DP L + ++ FH+ V + +ED DW P
Sbjct: 98 -ARVRAVEIDPPLASALPETIRSRMGEASGRFHV--VTMDATEITGNEDFGVDWP---PP 151
Query: 132 IRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV---SLLERACVKPILRPYQL 186
+++ NLP+NV+ P+++ + A FP + +V+ + +R +P R Y +
Sbjct: 152 TKLVANLPYNVAVPVLLNMLDA------FPTIEAVVVMVQAEVADRLAAEPGSRTYGV 203
>gi|303229693|ref|ZP_07316481.1| dimethyladenosine transferase [Veillonella atypica ACS-134-V-Col7a]
gi|302515818|gb|EFL57772.1| dimethyladenosine transferase [Veillonella atypica ACS-134-V-Col7a]
Length = 284
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 14/138 (10%)
Query: 17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPAR 76
I K + ++ K+L QNFL + + D+IV+ A G V E+GPG G++T+ L + A
Sbjct: 15 ICKRFDIKMSKKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTLTQG-LAQSGAN 73
Query: 77 LVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII 135
+ IE D R LD LAQ S + H GDV+ + ++ + + +++
Sbjct: 74 VTAIELDTRLLEVLDTTLAQYSNVTI-VH-GDVLKLDVPSIMNNE----------PFKVV 121
Query: 136 GNLPFNVSTPLIIKWIQA 153
NLP+ ++TP+I+ +++
Sbjct: 122 ANLPYYITTPIIMSLLES 139
>gi|374298185|ref|YP_005048376.1| dimethyladenosine transferase [Clostridium clariflavum DSM 19732]
gi|359827679|gb|AEV70452.1| dimethyladenosine transferase [Clostridium clariflavum DSM 19732]
Length = 284
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 91/183 (49%), Gaps = 16/183 (8%)
Query: 15 RDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP 74
+++I+ Y ++ K L QNFL + + +IV A + V E+GPG GS+T L R
Sbjct: 6 KELIRKYGIKLTKSLGQNFLTDYNIVSRIVDTAEITKDDMVIEIGPGIGSMTVE-LASRA 64
Query: 75 ARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
R+ +E D P L + L + S + D+M +++++ +S+ ++
Sbjct: 65 GRVAAVEIDKNLIPALEENLREFSNVEIINR--DIMKVSVKDI-------TYSKQNMKLK 115
Query: 134 IIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY---QLSVQE 190
++ NLP+ ++TP+I+K ++ ++ Q V+ +R KP + Y ++VQ
Sbjct: 116 VVANLPYYITTPIIMKLLEEEDNDIELMVFMVQKEVA--QRMVAKPGGKDYGALSVAVQY 173
Query: 191 FGQ 193
+ Q
Sbjct: 174 YAQ 176
>gi|325848863|ref|ZP_08170373.1| dimethyladenosine transferase [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480507|gb|EGC83569.1| dimethyladenosine transferase [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 282
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
+I+ I LY + K L QNFL + DKI+ + ++G + E+GPG G+I++ + +
Sbjct: 9 TIKLIQDLYGFKFTKSLGQNFLVDKNFVDKII-DLSEVSGENILEIGPGIGTISQE-MAK 66
Query: 73 RPARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
+LV+IE D P L D L + S D+++ ++ D ++ E G
Sbjct: 67 TCKKLVVIEIDKTLIPILKDNLGEFSNV-------DIIN---ADILKTDLKKIIKENFSG 116
Query: 132 --IRIIGNLPFNVSTPLIIKWIQ 152
+++ NLP+ ++TP+I K +
Sbjct: 117 EDFKVVSNLPYYITTPIIEKLFE 139
>gi|270284640|ref|ZP_05966446.2| dimethyladenosine transferase [Bifidobacterium gallicum DSM 20093]
gi|270276584|gb|EFA22438.1| dimethyladenosine transferase [Bifidobacterium gallicum DSM 20093]
Length = 319
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 23/166 (13%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K+ QNF+ +P +IVR AG G+ V EVGPG GS+T ++L R A + +E DP
Sbjct: 51 KKFGQNFVIDPGTVRRIVREAGVGAGDRVLEVGPGLGSLTLALLETR-AHVTAVEIDP-- 107
Query: 87 TPCLDMLAQASPCPVHFHLGDVMS-FTMQN----MFSEDRRRDWSEGLPGIRIIGNLPFN 141
P + L P + + D + F + N S + ++++G P ++ NLP+N
Sbjct: 108 -PVAERL----PRTIGEFMPDALDRFRVINEDALKVSAAQLPEFADGEP-FTLVANLPYN 161
Query: 142 VSTPLIIKWIQAISENLLFPKHKRQLVV---SLLERACVKPILRPY 184
V+TP+++ ++ FP + LV+ + +R C P + Y
Sbjct: 162 VATPIVLTLLER------FPNLTKFLVMVQKEVADRLCADPGSKIY 201
>gi|326333241|ref|ZP_08199488.1| dimethyladenosine transferase [Nocardioidaceae bacterium Broad-1]
gi|325948885|gb|EGD40978.1| dimethyladenosine transferase [Nocardioidaceae bacterium Broad-1]
Length = 299
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 20/175 (11%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R + LR KQ QNF+ + +IVR +G + V EVGPG GS+T +IL
Sbjct: 15 VRSLASELDLRPTKQRGQNFVIDANTVRRIVRESGVDASDVVVEVGPGLGSLTLAILETG 74
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGD-VMSFTMQNMFSEDRRRDWSEGLPGI 132
AR+ IE D ++LA+ P + + D +F++ + ++ R D G P
Sbjct: 75 -ARVTAIEID-------EVLAERLPRTIEEYAPDQADAFSL--IRADALRVDSVPGPPPT 124
Query: 133 RIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVV---SLLERACVKPILRPY 184
++ NLP+NVS P+++ + L P + LV+ + +R KP + Y
Sbjct: 125 ALVANLPYNVSVPVLLHLMS------LLPSLRHGLVMVQAEVADRLAAKPGSKVY 173
>gi|336394517|ref|ZP_08575916.1| dimethyladenosine transferase [Lactobacillus farciminis KCTC 3681]
Length = 293
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 20/174 (11%)
Query: 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPA 75
DI++ YKLRA K L QNFL ++ D IV +G + E+GPG G++T L +
Sbjct: 16 DIMRKYKLRAKKSLGQNFLTNEKVLDDIVDASGLKSDEIAIEIGPGIGALTEK-LAQVAE 74
Query: 76 RLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG--I 132
++ E D P L D L V D++ + E GL G I
Sbjct: 75 KVFAFEIDDNLIPVLADTLQYYDNIEVINQ--DILKVDLDEFVKE-------HGLEGKTI 125
Query: 133 RIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVS--LLERACVKPILRPY 184
+++ NLP+ ++TP+++ I N +P L++ + +R KP R Y
Sbjct: 126 KVVANLPYYITTPIMLNLI-----NSDYPFQSLVLMMQKEVAQRITAKPGHREY 174
>gi|348026759|ref|YP_004766564.1| ribosomal RNA small subunit methyltransferase A [Megasphaera
elsdenii DSM 20460]
gi|341822813|emb|CCC73737.1| ribosomal RNA small subunit methyltransferase A [Megasphaera
elsdenii DSM 20460]
Length = 283
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+R ++K + LR K+L QNFL + D I AG G+ V E+GPG G++T++ L
Sbjct: 12 VRYVVKRFGLRMNKKLGQNFLIRHAVVDDIADAAGIGEGDPVLEIGPGIGTLTQA-LAET 70
Query: 74 PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133
A + +E D P LD + H GD++ ++ + +
Sbjct: 71 GAAVTAVELDDHLLPVLDKTLEHYDNVRVVH-GDILRIDIEEVMNHQ----------PFT 119
Query: 134 IIGNLPFNVSTPLIIKWIQ 152
+ NLP+ ++TP+I+K ++
Sbjct: 120 VCANLPYYITTPIIMKLLE 138
>gi|269797689|ref|YP_003311589.1| dimethyladenosine transferase [Veillonella parvula DSM 2008]
gi|269094318|gb|ACZ24309.1| dimethyladenosine transferase [Veillonella parvula DSM 2008]
Length = 284
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 22/187 (11%)
Query: 17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPAR 76
I K + ++ K+L QNFL + + DKIV A G V EVGPG G++T+ L + A
Sbjct: 15 ICKRFDIKMSKKLGQNFLIKRGIVDKIVHAAELTVGEPVLEVGPGIGTLTQG-LAQSGAD 73
Query: 77 LVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIG 136
+ IE D R LD AS V GDV+ + + + +++
Sbjct: 74 VTAIELDRRLLEVLDT-TLASYNNVRIIHGDVLKLDVPTIMNHK----------PFKVVA 122
Query: 137 NLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICL 196
NLP+ ++TP+I+ +++ P + LVV + + ++ + +P +++G + +
Sbjct: 123 NLPYYITTPIIMSLLES-----KLPIER--LVVMVQKEVALRMVAKP---GTKDYGALSV 172
Query: 197 AYRDMCE 203
A + E
Sbjct: 173 AVQYYTE 179
>gi|225181539|ref|ZP_03734981.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1]
gi|225167787|gb|EEG76596.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1]
Length = 296
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR 73
+ +++ + ++ K+ QNFL + + KI+ A + + E+GPG GS+T+ L
Sbjct: 20 VSRLLEQHGVKLKKKWGQNFLVDENILKKIISAADVQKSDRILEIGPGIGSLTQK-LAEN 78
Query: 74 PARLVLIEKDPRFTPCL-DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
+R++ +E D R P L + LA+ + H GD M F + E +
Sbjct: 79 ASRVLTVEIDTRLIPVLRETLAEYDNVEI-IH-GDAMDFDPAPVCEEG----------PV 126
Query: 133 RIIGNLPFNVSTPLIIKWIQ 152
+++ NLP+NV+TPL+ +W++
Sbjct: 127 KLVANLPYNVATPLLYRWLK 146
>gi|345862688|ref|ZP_08814902.1| ribosomal RNA small subunit methyltransferase A [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345877710|ref|ZP_08829449.1| dimethyladenosine transferase [endosymbiont of Riftia pachyptila
(vent Ph05)]
gi|344225240|gb|EGV51604.1| dimethyladenosine transferase [endosymbiont of Riftia pachyptila
(vent Ph05)]
gi|345126030|gb|EGW55896.1| ribosomal RNA small subunit methyltransferase A [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 265
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K+ QNFL +P + +I+ + + E+GPG G+ITR +L RR L ++E D
Sbjct: 4 KARKRFGQNFLHDPGIIQRIIDAIAPRPNDNLVEIGPGQGAITRELL-RRCGTLQVVELD 62
Query: 84 PRFT-PCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
P D A +H D + F + S +R +R++GNLP+N+
Sbjct: 63 RDLIGPLADSCATLGELTIHS--ADALKFDFTALASPER---------PLRVVGNLPYNI 111
Query: 143 STPLIIKWIQAISE 156
STPL+ + ++
Sbjct: 112 STPLLFHLLSQAAQ 125
>gi|303231892|ref|ZP_07318601.1| dimethyladenosine transferase [Veillonella atypica ACS-049-V-Sch6]
gi|429760016|ref|ZP_19292508.1| dimethyladenosine transferase [Veillonella atypica KON]
gi|302513421|gb|EFL55454.1| dimethyladenosine transferase [Veillonella atypica ACS-049-V-Sch6]
gi|429178728|gb|EKY20000.1| dimethyladenosine transferase [Veillonella atypica KON]
Length = 284
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPAR 76
I K + ++ K+L QNFL + + D+IV+ A G V E+GPG G++T+ L + A
Sbjct: 15 ICKRFDIKMSKKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTLTQG-LAQSGAN 73
Query: 77 LVLIEKDPRFTPCLD-MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII 135
+ IE D R LD LAQ S + H GDV+ + ++ + +++
Sbjct: 74 VTAIELDTRLLEVLDTTLAQYSNVTI-VH-GDVLKLDVPSIMHHE----------PFKVV 121
Query: 136 GNLPFNVSTPLIIKWIQA 153
NLP+ ++TP+I+ +++
Sbjct: 122 ANLPYYITTPIIMSLLES 139
>gi|345874374|ref|ZP_08826188.1| dimethyladenosine transferase [Neisseria weaveri LMG 5135]
gi|343970647|gb|EGV38820.1| dimethyladenosine transferase [Neisseria weaveri LMG 5135]
Length = 260
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+A K+ QNFL + R+ IV G+ V E+GPG +IT L +R +L ++E D
Sbjct: 6 KARKRFGQNFLQDTRIISDIVNAVRPQPGDTVIEIGPGLAAITEP-LAKRLDKLHVVEID 64
Query: 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI-RIIGNLPFNV 142
L L A + H GDV+ F ++ +PG+ +I+GNLP+N+
Sbjct: 65 RDIIKRLKTLPFAGKLEI--HEGDVLQFDFRS-------------VPGMKKIVGNLPYNI 109
Query: 143 STPLIIKWIQAISE 156
STPL+ + + E
Sbjct: 110 STPLLFRLSEVADE 123
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.140 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,949,303,478
Number of Sequences: 23463169
Number of extensions: 163202283
Number of successful extensions: 337105
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2210
Number of HSP's successfully gapped in prelim test: 2094
Number of HSP's that attempted gapping in prelim test: 330334
Number of HSP's gapped (non-prelim): 4989
length of query: 240
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 102
effective length of database: 9,121,278,045
effective search space: 930370360590
effective search space used: 930370360590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)