BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17126
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With Adenosine In Space Group P212121
pdb|3FUV|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUV|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUV|C Chain C, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUW|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|B Chain B, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|C Chain C, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
Length = 271
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
S+R +++ + L A K+ QNFL +IV A TG V EVGPG G++TR++L
Sbjct: 9 SVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEA 67
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
A + IEKD R P L+ S PV D + + W E G
Sbjct: 68 -GAEVTAIEKDLRLRPVLE--ETLSGLPVRLVFQDALLY------------PWEEVPQGS 112
Query: 133 RIIGNLPFNVSTPLIIKWIQ 152
++ NLP++++TPL+ + ++
Sbjct: 113 LLVANLPYHIATPLVTRLLK 132
>pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
pdb|3FUT|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
Length = 271
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
S+R +++ + L A K+ QNFL +IV A TG V EVGPG G++TR++L
Sbjct: 9 SVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEA 67
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
A + IEKD R P L+ S PV D + + W E G
Sbjct: 68 -GAEVTAIEKDLRLRPVLE--ETLSGLPVRLVFQDALLY------------PWEEVPQGS 112
Query: 133 RIIGNLPFNVSTPLIIKWIQ 152
++ NLP++++TPL+ + ++
Sbjct: 113 LLVANLPYHIATPLVTRLLK 132
>pdb|3UZU|A Chain A, The Structure Of The Ribosomal Rna Small Subunit
Methyltransferase A From Burkholderia Pseudomallei
Length = 279
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVL 79
A K+ QNFL + + D IV G + E+GPG G++T ++ R P V
Sbjct: 16 ARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVE 75
Query: 80 IEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139
+++D + L Q + H GD ++F ++ R E P +RIIGNLP
Sbjct: 76 LDRD-----LIGRLEQRFGELLELHAGDALTFDFGSI-----ARPGDE--PSLRIIGNLP 123
Query: 140 FNVSTPLIIKWIQ 152
+N+S+PL+ +
Sbjct: 124 YNISSPLLFHLMS 136
>pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
Conserved Adenosine Dimethyltransferase
pdb|1QYR|B Chain B, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
Conserved Adenosine Dimethyltransferase
pdb|4ADV|V Chain V, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
Length = 252
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 31 QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL 90
QNFL + + D IV G + E+GPG ++T + R +L +IE D L
Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPV-GERLDQLTVIELDRDLAARL 59
Query: 91 DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL---I 147
P + + D M+F F E + G P +R+ GNLP+N+STPL +
Sbjct: 60 QTHPFLGP-KLTIYQQDAMTFN----FGELAEK---MGQP-LRVFGNLPYNISTPLMFHL 110
Query: 148 IKWIQAISE 156
+ AI++
Sbjct: 111 FSYTDAIAD 119
>pdb|3TPZ|A Chain A, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E.
Coli Ksga
pdb|3TPZ|B Chain B, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E.
Coli Ksga
Length = 273
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP 84
A K+ QNFL + + D IV G + E+GPG ++T + R +L +IE D
Sbjct: 11 ARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPV-GERLDQLTVIELD- 68
Query: 85 RFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST 144
D+ A+ P LG ++ Q+ + + + +R+ GN P+N+ST
Sbjct: 69 -----RDLAARLQTHPF---LGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNPPYNIST 120
Query: 145 PL---IIKWIQAISE 156
PL + + AI++
Sbjct: 121 PLMFHLFSYTDAIAD 135
>pdb|3TQS|A Chain A, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|B Chain B, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|C Chain C, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|D Chain D, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
Length = 255
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K+ Q+FL + + KIV + + E+GPG G++T +L L L+E D
Sbjct: 5 KRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDL 63
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
L + + D + F ++ ++ +R++GNLP+N+STPL
Sbjct: 64 VAFLQKKYNQQKN-ITIYQNDALQFDFSSVKTDK----------PLRVVGNLPYNISTPL 112
Query: 147 IIKWIQAI 154
+ I
Sbjct: 113 LFHLFSQI 120
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K+L Q FL + +K V +A + V E+G G G +T L + ++ +IE D
Sbjct: 26 KKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEE-LAKNAKKVYVIEIDKSL 84
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P + L + + GD + + + D++ +++ NLP+ +S+P+
Sbjct: 85 EPYANKLKELY-NNIEIIWGDALKVDLNKL-------DFN------KVVANLPYQISSPI 130
Query: 147 IIKWIQ 152
K I+
Sbjct: 131 TFKLIK 136
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 20/126 (15%)
Query: 29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTP 88
+ Q+ L P + + I+ A + V EVGPG G++T +L + ++V E DPR
Sbjct: 6 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLL-EKAKKVVACELDPRLVA 64
Query: 89 CLDMLAQASPCPVHFH--LGDVMSFTMQNMFSEDRRRDWSEGLPGIRI-IGNLPFNVSTP 145
L Q +P +GDV+ LP + NLP+ +S+P
Sbjct: 65 ELHKRVQGTPVASKLQVLVGDVL----------------KTDLPFFDTCVANLPYQISSP 108
Query: 146 LIIKWI 151
+ K +
Sbjct: 109 FVFKLL 114
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
And Sah
Length = 249
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
+R K Q+ L + KI GN V EVG G G++T+ +L +L +IE
Sbjct: 3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 62
Query: 83 DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
D L + ++ D F ++ E ++++GNLP+NV
Sbjct: 63 DREMVENLKSIGDERLEVIN---EDASKFPFCSLGKE------------LKVVGNLPYNV 107
Query: 143 STPLI 147
++ +I
Sbjct: 108 ASLII 112
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
+R K Q+ L + KI GN V EVG G G++T+ +L +L +IE
Sbjct: 2 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 61
Query: 83 DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
D L + ++ D F ++ E ++++GNLP+NV
Sbjct: 62 DREMVENLKSIGDERLEVIN---EDASKFPFCSLGKE------------LKVVGNLPYNV 106
Query: 143 STPLI 147
++ +I
Sbjct: 107 ASLII 111
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 30 SQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPC 89
+Q FL + +K V +A + V E+G G G +T L + ++ +IE D P
Sbjct: 2 AQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEE-LAKNAKKVYVIEIDKSLEPY 60
Query: 90 LDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIK 149
+ L + + GD + + + D++ +++ NLP+ +S+P+ K
Sbjct: 61 ANKLKELYN-NIEIIWGDALKVDLNKL-------DFN------KVVANLPYQISSPITFK 106
Query: 150 WIQ 152
I+
Sbjct: 107 LIK 109
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 31 QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL 90
Q FL + +K V +A + V E+G G G +T L + ++ +IE D P
Sbjct: 1 QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEE-LAKNAKKVYVIEIDKSLEPYA 59
Query: 91 DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKW 150
+ L + + GD + + + D++ +++ NLP+ +S+P+ K
Sbjct: 60 NKLKELYN-NIEIIWGDALKVDLNKL-------DFN------KVVANLPYQISSPITFKL 105
Query: 151 IQ 152
I+
Sbjct: 106 IK 107
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 28 QLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPR-F 86
+ SQNFL ++ ++I++ + V E+G G G +T L + ++ IE D F
Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTK-LAKISKQVTSIELDSHLF 64
Query: 87 TPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP 145
+ L + +H D++ F N ++R +I+GN+P+++ST
Sbjct: 65 NLSSEKLKLNTRVTLIH---QDILQFQFPN-----KQR--------YKIVGNIPYHLSTQ 108
Query: 146 LIIK 149
+I K
Sbjct: 109 IIKK 112
>pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
Length = 244
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 30 SQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPC 89
SQNF+ DKI+ N + + E+G G G T ++ +R + IE D +
Sbjct: 9 SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELV-QRCNFVTAIEIDHKLCKT 67
Query: 90 LDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIK 149
+ + H + + +Q F +++ +I GN+P+N+ST +I K
Sbjct: 68 TE-----NKLVDHDNFQVLNKDILQFKFPKNQ---------SYKIFGNIPYNISTDIIRK 113
Query: 150 WI 151
+
Sbjct: 114 IV 115
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
Length = 299
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 47/138 (34%)
Query: 31 QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL 90
Q+ L P + DKI+ A + + V E+G G G++T +L +++ I+ D R
Sbjct: 22 QHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLL-PLAKKVITIDIDSR----- 75
Query: 91 DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI---------------- 134
M SE ++R EG + +
Sbjct: 76 -------------------------MISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFDVC 110
Query: 135 IGNLPFNVSTPLIIKWIQ 152
N+P+ +S+PLI K I
Sbjct: 111 TANIPYKISSPLIFKLIS 128
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 39 LTDK---IVRNAGTITGNEV-CEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLA 94
LTDK I+RNA E+ E G GS + +N + RL++IE +PR + + +
Sbjct: 256 LTDKEYQIMRNASMAVLREIGVETG---GSNVQFAVNPKNGRLIVIEMNPRVSRSSALAS 312
Query: 95 QASPCPV 101
+A+ P+
Sbjct: 313 KATGFPI 319
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 39 LTDK---IVRNAGTITGNEV-CEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLA 94
LTDK I+RNA E+ E G GS + +N + RL++IE +PR + + +
Sbjct: 256 LTDKEYQIMRNASMAVLREIGVETG---GSNVQFAVNPKNGRLIVIEMNPRVSRSSALAS 312
Query: 95 QASPCPV 101
+A+ P+
Sbjct: 313 KATGFPI 319
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 39 LTDK---IVRNAGTITGNEV-CEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLA 94
LTDK I+RNA E+ E G GS + +N + RL++IE +PR + + +
Sbjct: 256 LTDKEYQIMRNASMAVLREIGVETG---GSNVQFAVNPKNGRLIVIEMNPRVSRSSALAS 312
Query: 95 QASPCPV 101
+A+ P+
Sbjct: 313 KATGFPI 319
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIE 81
L A+K + F PRL D G +VG G G +T++IL P AR V+++
Sbjct: 147 LLAMKASNLAFHEIPRLLD--------FRGRSFVDVGGGSGELTKAILQAEPSARGVMLD 198
Query: 82 KDPRFTPCLDMLAQ 95
++ D L+
Sbjct: 199 REGSLGVARDNLSS 212
>pdb|3OPY|I Chain I, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|J Chain J, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|K Chain K, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|L Chain L, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 351
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 37 PRLTDKI----VRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
R DK+ + N G I GN VG G IT +L ++ AR++L+ D
Sbjct: 165 SRWEDKVKGPALANRGPIRGN----VGAGDRKITFHLLCKKTARMILVGDD 211
>pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2-
Enoyl-coa Isomerase
pdb|1SG4|B Chain B, Crystal Structure Of Human Mitochondrial Delta3-delta2-
Enoyl-coa Isomerase
pdb|1SG4|C Chain C, Crystal Structure Of Human Mitochondrial Delta3-delta2-
Enoyl-coa Isomerase
Length = 260
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 151 IQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYE 210
+ AI++ + P H RQL +++ +A ++ VQ F + +D ++ +Y
Sbjct: 195 LSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNF--VSFISKDSIQKSLQMYL 252
Query: 211 YTLEDTPG 218
L++ G
Sbjct: 253 ERLKEEKG 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,439,446
Number of Sequences: 62578
Number of extensions: 301374
Number of successful extensions: 537
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 24
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)