BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17126
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2TBQ0|TFB1M_BOVIN Mitochondrial dimethyladenosine transferase 1 OS=Bos taurus
GN=TFB1M PE=2 SV=2
Length = 341
Score = 181 bits (459), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 113/152 (74%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL++L+A+KQLSQNFL + RLTDKIVR AG +T V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFRLQAVKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ F E +R
Sbjct: 69 ITRSILNAGVAELLVVEKDSRFIPGLQMLSDAAPGKLRIVHGDVLTFKIERAFPESLKRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
W + P + IIGNLPF+VSTPLIIKW++ +S+
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENVSQ 160
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LLE A V P LRP QL+V F +C YR MC+E P L+ Y +
Sbjct: 265 GMLFPEARRLESTGKLLELADVDPTLRPTQLTVSHFKSLCDVYRKMCDEDPHLFAYNFRE 324
>sp|Q2PG46|TFB1M_MACFA Dimethyladenosine transferase 1, mitochondrial OS=Macaca
fascicularis GN=TFB1M PE=2 SV=1
Length = 345
Score = 180 bits (457), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 112/149 (75%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+IR+IIKL++L+A KQLSQNFL + RLTDKIVR AG + V EVGPGPG IT
Sbjct: 11 RLPPLPTIREIIKLFRLQATKQLSQNFLLDLRLTDKIVRKAGNLANAYVYEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN A L+++EKD RF P L ML++A+P + GDV++F ++ FSE +R W
Sbjct: 71 RSILNADVAELLVVEKDTRFIPGLQMLSEAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + LLE A + P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFKSLCEVYRRMCDEDPQLFAYNFRE- 324
Query: 217 PGDIEPEAVAEQEGEGDEIDF 237
++ + ++E + D +
Sbjct: 325 --ELRQRKIKKKEKQDDAKSY 343
>sp|Q8WVM0|TFB1M_HUMAN Dimethyladenosine transferase 1, mitochondrial OS=Homo sapiens
GN=TFB1M PE=1 SV=1
Length = 346
Score = 180 bits (456), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/149 (59%), Positives = 111/149 (74%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+IR+IIKL +L+A KQLSQNFL + RLTDKIVR AG +T V EVGPGPG IT
Sbjct: 11 RLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ FSE +R W
Sbjct: 71 RSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + LLE A + P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCDEDPQLFAYNFRE- 324
Query: 217 PGDIEPEAVAEQEGEGDEIDFNKL 240
+++ +E E D+ + +L
Sbjct: 325 --ELKRRKSKNEEKEEDDAENYRL 346
>sp|Q5R4V9|TFB1M_PONAB Dimethyladenosine transferase 1, mitochondrial OS=Pongo abelii
GN=TFB1M PE=2 SV=1
Length = 343
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 111/149 (74%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+IR+IIKL +++A KQLSQNFL + RLTDKIVR AG +T V EVGPGPG IT
Sbjct: 11 RLPPLPTIREIIKLLRVQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN A L+++EKD RF P L ML+ A+P + GDV++F ++ FSE +R W
Sbjct: 71 RSILNADVAELLVVEKDTRFVPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWE 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+ P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 131 DDPPDVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 158 LLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 216
+LFP+ +R + LLE A V P LRP Q S+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLESTGRLLELADVDPTLRPCQPSISHFKSLCDVYRKMCDEDPQLFAYNFRE- 324
Query: 217 PGDIEPEAVAEQEGEGDEID 236
+++ +E E D+ +
Sbjct: 325 --ELKQRKSKNEEKEEDDAE 342
>sp|Q8JZM0|TFB1M_MOUSE Dimethyladenosine transferase 1, mitochondrial OS=Mus musculus
GN=Tfb1m PE=2 SV=1
Length = 345
Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 111/151 (73%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL+ LRA+KQLSQNFL + RLTDKIVR AG++ V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFGLRAVKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV+++ ++ F + RR
Sbjct: 69 ITRSILNANVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPGNIRRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LL+ A + P LRP LS+ F +C YR MC+E P L+ Y +
Sbjct: 265 GMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDVYRKMCDEDPQLFTYNFRE 324
Query: 216 TPGDIEPEAVAEQEGEGD 233
+++ + QE +GD
Sbjct: 325 ---ELKQKKSKGQEKDGD 339
>sp|Q811P6|TFB1M_RAT Dimethyladenosine transferase 1, mitochondrial OS=Rattus norvegicus
GN=Tfb1m PE=2 SV=1
Length = 345
Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 111/151 (73%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
RLPP+P+IR+IIKL+ LRA KQLSQNFL + RLTDKIVR AG++ V EVGPGPG
Sbjct: 9 TFRLPPLPTIREIIKLFGLRAAKQLSQNFLLDLRLTDKIVRKAGSLADVYVYEVGPGPGG 68
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124
ITRSILN A L+++EKD RF P L ML+ A+P + GDV+++ ++ F ++ RR
Sbjct: 69 ITRSILNADIAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTYKIEKAFPDNIRRQ 128
Query: 125 WSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
W + P + IIGNLPF+VSTPLIIKW++ IS
Sbjct: 129 WEDDPPNVHIIGNLPFSVSTPLIIKWLENIS 159
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
+LFP+ +R + LL+ A + P LRP LS+ F +C YR MC+E P L+ Y +
Sbjct: 265 GMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDVYRKMCDEDPQLFAYNFRE 324
Query: 216 TPGDIEPEAVAEQEGEGD 233
+++ + QE +GD
Sbjct: 325 ---ELKQKKRKGQEKDGD 339
>sp|Q28HM1|TFB1M_XENTR Dimethyladenosine transferase 1, mitochondrial OS=Xenopus
tropicalis GN=tfb1m PE=2 SV=1
Length = 346
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/150 (54%), Positives = 107/150 (71%)
Query: 7 RLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSIT 66
RLPP+P+I +IIKL+ LRA KQLSQNFL + +LTDKIVR AG + VCEVGPGPG IT
Sbjct: 11 RLPPLPTIGEIIKLFNLRAEKQLSQNFLLDLKLTDKIVRKAGNLQNAYVCEVGPGPGGIT 70
Query: 67 RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126
RSILN L+++EKD RF P L ML +AS V GD++++ M F + ++ W
Sbjct: 71 RSILNAGVEELLVVEKDTRFIPGLKMLNEASSGKVQIVHGDILTYRMDRAFPKHLKKPWD 130
Query: 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+ P + IIGNLPF+VSTPLIIKW++ +++
Sbjct: 131 DDPPNVHIIGNLPFSVSTPLIIKWLEQLAD 160
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
++LFP+ R + +L A V P LRP +L++ F ++C YR+MC++ P L+ Y +
Sbjct: 265 SILFPEESRLKCTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCDQNPNLFAYNFRE 324
Query: 216 TPGDIEPEAVAEQEGEGDEI 235
+ + +EGE D++
Sbjct: 325 ELRMRKLQGKTTEEGEEDDL 344
>sp|Q7T0W5|TFB1M_XENLA Dimethyladenosine transferase 1, mitochondrial OS=Xenopus laevis
GN=tfb1m PE=2 SV=1
Length = 344
Score = 166 bits (421), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 107/155 (69%)
Query: 2 AAKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPG 61
A RLPP+P+I +I+KL+ LRA KQLSQNFL + +LTDKIVR AG + VCEVGPG
Sbjct: 6 ALAKFRLPPLPTIGEIVKLFNLRAEKQLSQNFLLDLKLTDKIVRRAGNLQNAYVCEVGPG 65
Query: 62 PGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR 121
PG ITRSILN L+++EKD RF P L ML +AS V GD++++ M F +
Sbjct: 66 PGGITRSILNAGVEELLVVEKDTRFIPGLKMLNEASGGKVRTVHGDILTYRMDRAFPKHL 125
Query: 122 RRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156
+ W + P + IIGNLPF+VSTPLIIKW++ +++
Sbjct: 126 IKSWDDEPPNVHIIGNLPFSVSTPLIIKWLEQVAD 160
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 157 NLLFPKHKR-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 215
++LFP+ R QL +L A V P LRP +L++ F ++C YR+MC++ P L+ Y +
Sbjct: 265 SILFPEEIRIQLTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCDQNPHLFSYNYRE 324
>sp|Q9VTM5|TFB1M_DROME Dimethyladenosine transferase 1, mitochondrial OS=Drosophila
melanogaster GN=mtTFB1 PE=2 SV=2
Length = 330
Score = 147 bits (372), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/155 (50%), Positives = 106/155 (68%), Gaps = 12/155 (7%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPG 63
+RLPPMP+IR+++KLY+L+A KQLSQNFL + RLTDKIV++AG I + V EVGPGPG
Sbjct: 12 GMRLPPMPTIRELVKLYRLQARKQLSQNFLMDERLTDKIVKSAGRIDPRDLVLEVGPGPG 71
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPCPVHF--HLGDVMSFTMQNMFSED 120
ITRSIL R P RL+L+EKDPRF L +L + ASP + F H D++ F ++ +
Sbjct: 72 GITRSILRRHPQRLLLVEKDPRFGETLQLLKECASPLNIQFDIHYDDILRFNIEQHIPDT 131
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
+R I +IGNLPF +ST L+I W+ ++
Sbjct: 132 SQR--------IHLIGNLPFAISTRLLINWLDDLA 158
>sp|Q2LZ79|TFB1M_DROPS Dimethyladenosine transferase 1, mitochondrial OS=Drosophila
pseudoobscura pseudoobscura GN=mtTFB1 PE=3 SV=2
Length = 337
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 104/150 (69%), Gaps = 12/150 (8%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNE-VCEVGPGPG 63
+RLPP+P+IR+++KLYKL+A+KQLSQNFL + RLTDKIV++AG I + V EVGPGPG
Sbjct: 12 GMRLPPLPTIRELVKLYKLQAMKQLSQNFLMDERLTDKIVKSAGRIDPRDIVLEVGPGPG 71
Query: 64 SITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-ASPC--PVHFHLGDVMSFTMQNMFSED 120
ITRSIL R+P RL+L+EKD RF L +L + ASP V + D++ F ++ +
Sbjct: 72 GITRSILRRQPQRLILVEKDRRFGETLQLLRECASPLDMQVDIYYDDILRFNIEQHIPDT 131
Query: 121 RRRDWSEGLPGIRIIGNLPFNVSTPLIIKW 150
+R I +IGNLPF++ST L+I W
Sbjct: 132 TQR--------IHLIGNLPFSISTRLLINW 153
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 157 NLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGL--YEYTLE 214
LL P + + +L +RA V+ LR ++LSV + ++ AY + +E P + Y+Y
Sbjct: 265 TLLPPDSREETTQTLFQRADVRDTLRSFELSVPQCLRLADAYAEYIKEHPEVEAYDYRGP 324
Query: 215 DTPGDIEPEAVA 226
P D+ A A
Sbjct: 325 KNP-DVSGAAAA 335
>sp|P91424|TFB1M_CAEEL Dimethyladenosine transferase 1, mitochondrial OS=Caenorhabditis
elegans GN=T03F1.7 PE=3 SV=2
Length = 367
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 103/158 (65%), Gaps = 5/158 (3%)
Query: 3 AKALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGP 62
A A RLPP+P++RD I +Y+LRA K LSQN+L + +T KI ++A I + V E+GPGP
Sbjct: 2 ASASRLPPLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVIEKDWVIEIGPGP 61
Query: 63 GSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRR 122
G ITR+IL +RL ++E D RF P L LA+A+ + H D + + +++ +
Sbjct: 62 GGITRAILEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIHHQDALRTEIGDIWKNETA 121
Query: 123 R----DWSEG-LPGIRIIGNLPFNVSTPLIIKWIQAIS 155
R DW + LP + +IGNLPFN+++PLIIK+++ +S
Sbjct: 122 RPESVDWHDSNLPAMHVIGNLPFNIASPLIIKYLRDMS 159
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 159 LFPKH-KRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTP 217
L+P+ + +L LL++ + P +L +++F + Y + C PGL+ Y +
Sbjct: 267 LYPEELEDELSDDLLKKCRIDPTTTSIRLGIEQFADLAEGYNEQCIRYPGLFLYDYTNKL 326
Query: 218 GDIE 221
++E
Sbjct: 327 HNLE 330
>sp|Q1A705|TFB1M_HARVE Dimethyladenosine transferase 1, mitochondrial OS=Hartmannella
vermiformis PE=3 SV=1
Length = 343
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 100/186 (53%), Gaps = 37/186 (19%)
Query: 5 ALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS 64
+RLPP+P+I ++I+L+ L A +QLSQNFL + +TDKIVR++G +T V EVGPGPG
Sbjct: 2 TMRLPPLPTIGELIRLFGLSAKQQLSQNFLLDLNITDKIVRSSGDLTNKTVIEVGPGPGG 61
Query: 65 ITRSILNRRPARLVLIEKDPRFTPCLDMLAQA------SPCPVHFH-------------- 104
+TRSIL +LV+IEKD RF P L++L A SP F
Sbjct: 62 LTRSILKAGAKKLVVIEKDRRFLPALEVLRHAAGNIDGSPWEEAFLTKSEMDAKRYMSYA 121
Query: 105 ---------LGDVMSFTMQNMFSE-------DRRRDWSEGLPGIRIIGNLPFNVSTPLII 148
+ DV+ Q + + + W E + I IIGNLPF +ST L I
Sbjct: 122 PNKSRMQIVMNDVLRVDEQEILQHIHAPIDSNDKTQW-ENMAPITIIGNLPFAISTELTI 180
Query: 149 KWIQAI 154
KW++ I
Sbjct: 181 KWLKQI 186
>sp|A1B0G4|RSMA_PARDP Ribosomal RNA small subunit methyltransferase A OS=Paracoccus
denitrificans (strain Pd 1222) GN=rsmA PE=3 SV=1
Length = 282
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + LRA KQL QNFL + LT KI R AG +TG +V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIARHDLRAKKQLGQNFLLDLNLTAKIARAAGDLTGCDVIEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ IEKD R P L +A A P + GD + + P
Sbjct: 67 AEGARHVLAIEKDARALPALAEIATAYPGRLEVIHGDALEIDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IRI+ NLP+NV T L+I+W+
Sbjct: 116 PIRIVANLPYNVGTELLIRWL 136
>sp|A4WRK3|RSMA_RHOS5 Ribosomal RNA small subunit methyltransferase A OS=Rhodobacter
sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rsmA PE=3
SV=1
Length = 278
Score = 104 bits (259), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 17/166 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A KQL QNFL + LT KI R AG + G++V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLKGSDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R P L +A A P + D + + + P
Sbjct: 67 AEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAARLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAI------SENLLFPKHKRQLVVS 170
IRI+ NLP+NV T L+ +W+ + S L+F K + +V+
Sbjct: 116 PIRIVANLPYNVGTELLTRWLSSGWPPFWESLTLMFQKEVAERIVA 161
>sp|B3Q9S4|RSMA_RHOPT Ribosomal RNA small subunit methyltransferase A OS=Rhodopseudomonas
palustris (strain TIE-1) GN=rsmA PE=3 SV=1
Length = 287
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 82/143 (57%), Gaps = 10/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT +I R AG + G V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLEGVTVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE+D R L+ +A P + GD M F + + + DR
Sbjct: 67 ATGAKRVIAIERDERALGALEEIAAHYPGRLDIISGDAMEFDPRPLLNGDR--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RI+ NLP+N++TPL+I W+ A
Sbjct: 118 -ARIVANLPYNIATPLLIGWLCA 139
>sp|Q6N5B4|RSMA_RHOPA Ribosomal RNA small subunit methyltransferase A OS=Rhodopseudomonas
palustris (strain ATCC BAA-98 / CGA009) GN=rsmA PE=3
SV=1
Length = 287
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 82/143 (57%), Gaps = 10/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A K L QNFL + LT +I R AG + G V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLEGVTVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE+D R L+ +A P + GD M F + + + DR
Sbjct: 67 ATGAKRVIAIERDERALGALEEIAAHYPGRLDIISGDAMEFDPRPLLNGDR--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RI+ NLP+N++TPL+I W+ A
Sbjct: 118 -ARIVANLPYNIATPLLIGWLCA 139
>sp|B9KST5|RSMA_RHOSK Ribosomal RNA small subunit methyltransferase A OS=Rhodobacter
sphaeroides (strain KD131 / KCTC 12085) GN=rsmA PE=3
SV=1
Length = 278
Score = 103 bits (258), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 17/166 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A KQL QNFL + LT KI R AG +T ++V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R P L +A A P + D + + + P
Sbjct: 67 AEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDLAARLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAI------SENLLFPKHKRQLVVS 170
IRI+ NLP+NV T L+ +W+ + S L+F K + +V+
Sbjct: 116 PIRIVANLPYNVGTELLTRWLSSDWPPFWESLTLMFQKEVAERIVA 161
>sp|Q3J2B9|RSMA_RHOS4 Ribosomal RNA small subunit methyltransferase A OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=rsmA PE=3 SV=1
Length = 278
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 24/180 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A KQL QNFL + LT KI R AG +T ++V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R P L +A A P + D + + + P
Sbjct: 67 AEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAARLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAI------SENLLFPKHKRQLVVSLLERACVKPILRPY 184
IRI+ NLP+NV T L+ +W+ + S L+F K + ER KP + Y
Sbjct: 116 PIRIVANLPYNVGTELLTRWLSSDWPPFWESLTLMFQKE-------VAERIVAKPGSKAY 168
>sp|Q1GI39|RSMA_RUEST Ribosomal RNA small subunit methyltransferase A OS=Ruegeria sp.
(strain TM1040) GN=rsmA PE=3 SV=1
Length = 280
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I ++L A K L QNFL + LT KI R AG +TG +V E+GPGPG +TR +L
Sbjct: 7 LPPLREVIATHQLSARKSLGQNFLLDLNLTAKIARQAGDLTGCDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ IEKD R P L+ +A A P + GD + + P
Sbjct: 67 SEGARKILAIEKDQRCLPALEDIAAAYPGRLEVINGDALEIDPLAHLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR+ NLP+NV T L+++W+
Sbjct: 116 PIRVAANLPYNVGTELLVRWL 136
>sp|Q5FU61|RSMA_GLUOX Ribosomal RNA small subunit methyltransferase A OS=Gluconobacter
oxydans (strain 621H) GN=rsmA PE=3 SV=1
Length = 303
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 22/173 (12%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PS+RD I+ + L A K L Q+FL +P + +I G +TG V E+GPGPG +TR++L
Sbjct: 34 LPSLRDTIQAHGLDAKKSLGQHFLLDPGICARIAALGGDLTGRSVVEIGPGPGGLTRALL 93
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +R+ ++E D R P LD LA P +H D + + R
Sbjct: 94 DTPASRVDVVEIDERAWPLLDELATYYPDRLHVVRQDALKLDAATLAPAPR--------- 144
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISE----NLLFPKHKRQLVVSLLERACVKP 179
+II NLP+NV+TPL++ W++ S+ +L+F QL V+ ER C P
Sbjct: 145 --QIIANLPYNVATPLLVGWLRQASQWERLSLMF-----QLEVA--ERICAAP 188
>sp|A3PJZ3|RSMA_RHOS1 Ribosomal RNA small subunit methyltransferase A OS=Rhodobacter
sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rsmA PE=3
SV=1
Length = 278
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 89/166 (53%), Gaps = 17/166 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ + L A +QL QNFL + LT KI R AG +T ++V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIRAHGLSAKRQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IEKD R P L +A A P + D + + + P
Sbjct: 67 AEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAARLT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAI------SENLLFPKHKRQLVVS 170
IRI+ NLP+NV T L+ +W+ + S L+F K + +V+
Sbjct: 116 PIRIVANLPYNVGTELLTRWLSSDWPPFWESLTLMFQKEVAERIVA 161
>sp|Q0AQC3|RSMA_MARMM Ribosomal RNA small subunit methyltransferase A OS=Maricaulis maris
(strain MCS10) GN=rsmA PE=3 SV=1
Length = 289
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 81/149 (54%), Gaps = 11/149 (7%)
Query: 6 LRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSI 65
+ L +P +RD+I + L A K Q+FL + LT KI R AG ++ ++ EVGPGPG +
Sbjct: 1 MSLDQLPPLRDVIASHDLGAKKSFGQHFLLDLNLTAKIARLAGDMSRDQAIEVGPGPGGL 60
Query: 66 TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125
TR+IL A L+ +E D RF LD + AS + GD + + +
Sbjct: 61 TRAILAEGAASLLAVEMDSRFLGALDEINVASGGRLTVEQGDALEVDETALLTG------ 114
Query: 126 SEGLPGIRII-GNLPFNVSTPLIIKWIQA 153
PG ++I NLP+NV T L+IKW+QA
Sbjct: 115 ----PGDKVILSNLPYNVGTQLLIKWLQA 139
>sp|Q8UGD5|RSMA_AGRT5 Ribosomal RNA small subunit methyltransferase A OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=rsmA PE=3 SV=1
Length = 276
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFLF+ LT KI R AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKSLGQNFLFDLNLTQKIARTAGPLDGVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ +E+D R P L + P + GD + + + G P
Sbjct: 67 SLGAKKVIAVERDSRCLPVLAEIEAHYPGRLEVIEGDALKTDFEALV--------PAGEP 118
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
+RII NLP+NV T L++ W+ +S L+F K Q +V+
Sbjct: 119 -VRIIANLPYNVGTQLLVNWLLPREWPPFWLSMTLMFQKEVGQRIVA 164
>sp|A8LI73|RSMA_DINSH Ribosomal RNA small subunit methyltransferase A OS=Dinoroseobacter
shibae (strain DFL 12) GN=rsmA PE=3 SV=1
Length = 280
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I +KL A K L QNFL + LT +I R G ++G +V EVGPGPG +TR +L
Sbjct: 7 LPPLREVIAAHKLSAKKSLGQNFLLDLNLTARIARVPGDLSGADVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IEKD R P L +A A P + GD + S P
Sbjct: 67 AEGARKVLAIEKDARCLPALQQIAAAYPGRLEVIEGDALEVDATAYLS-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I I NLP+NV T L+++W+
Sbjct: 116 PIHIAANLPYNVGTELLVRWL 136
>sp|Q2RXA9|RSMA_RHORT Ribosomal RNA small subunit methyltransferase A OS=Rhodospirillum
rubrum (strain ATCC 11170 / NCIB 8255) GN=rsmA PE=3 SV=1
Length = 288
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 21/196 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A + L QNFLF+ LT +I R G I V E+GPGPG +TR++L
Sbjct: 16 LPPLREVIATHGLDARRSLGQNFLFDLNLTGRIARAGGEIDQGTVIEIGPGPGGLTRALL 75
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE+D R L +A P + GD + + + R
Sbjct: 76 GAGARRVIAIERDSRCRGVLAEIAAVWPGRLETIEGDALDIDVAALGEAPR--------- 126
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQE 190
R+I NLP+NV+TPL+I W++ S F + +++R +P ++
Sbjct: 127 --RVIANLPYNVATPLLIGWLRHASA---FERFVLMFQKEVVDRLAARP-------GTKD 174
Query: 191 FGQICLAYRDMCEEMP 206
+G++ + + +CE P
Sbjct: 175 YGRLSVITQWLCEVRP 190
>sp|Q984S7|RSMA_RHILO Ribosomal RNA small subunit methyltransferase A OS=Rhizobium loti
(strain MAFF303099) GN=rsmA PE=3 SV=1
Length = 279
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 18/170 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L+A K L QNFL + LT KI R+AG +T V EVGPGPG +TR++L
Sbjct: 6 LPPLRDVIERHGLQAKKALGQNFLLDLNLTGKIARSAGDLTNTAVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
+ R+V IE+D R CL LA+ S P + GD + + S
Sbjct: 66 SNGARRVVAIERDER---CLAALAEVSAHYPGRLEVVSGDALKTDFAALASAAGGASGQ- 121
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWIQAI-------SENLLFPKHKRQLVVS 170
+RI+ NLP+N+ T L+++W+ + S L+F + Q +V+
Sbjct: 122 ----VRIVANLPYNIGTELLVRWLTVVDWPPFYASMTLMFQREVAQRIVA 167
>sp|B3PUU6|RSMA_RHIE6 Ribosomal RNA small subunit methyltransferase A OS=Rhizobium etli
(strain CIAT 652) GN=rsmA PE=3 SV=1
Length = 275
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT K+ R AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ +E+D R P L +A P + GD + +++ E
Sbjct: 67 ALGAKKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKADFESLAPEG---------- 116
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ W+
Sbjct: 117 AVKIIANLPYNVGTQLLVNWL 137
>sp|B1LVB8|RSMA_METRJ Ribosomal RNA small subunit methyltransferase A OS=Methylobacterium
radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
GN=rsmA PE=3 SV=1
Length = 292
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R+++ + L K L QNFL++ LT +I R AG + G V EVGPGPG +TR++L
Sbjct: 7 LPPLREVVARHGLEPKKALGQNFLYDLNLTGRIARAAGPLAGVTVVEVGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
AR+V IE+DPR P L +A P + D ++F + + +
Sbjct: 67 AEGAARVVAIERDPRALPALAEIAAHYPGRLEVVDADALAFDPRPLVGDAP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RI+ NLP+NV T L+ W+
Sbjct: 118 -ARIVANLPYNVGTALLTGWL 137
>sp|Q28RD6|RSMA_JANSC Ribosomal RNA small subunit methyltransferase A OS=Jannaschia sp.
(strain CCS1) GN=rsmA PE=3 SV=2
Length = 289
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 77/146 (52%), Gaps = 13/146 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I + L A K L QNFL + LT KI R AG +T +V EVGPGPG +TR +L
Sbjct: 7 LPPLRDVIAAHGLSARKALGQNFLLDLNLTAKIARLAGDLTSVDVLEVGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R+V +EKDPR P L + P + D + DW+ L
Sbjct: 67 AEGARRVVAVEKDPRCLPVLAEIEAIYPGRLKVLNADALEL------------DWAADLQ 114
Query: 131 GIR-IIGNLPFNVSTPLIIKWIQAIS 155
R I+ NLP+NV T L+++W+ S
Sbjct: 115 APRKIVANLPYNVGTELLVRWLTPAS 140
>sp|A7IJ80|RSMA_XANP2 Ribosomal RNA small subunit methyltransferase A OS=Xanthobacter
autotrophicus (strain ATCC BAA-1158 / Py2) GN=rsmA PE=3
SV=1
Length = 288
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 23/170 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT +I R +G + G V EVGPGPG +TR++L
Sbjct: 7 LPPLRDVIRRHGLSAQKSLGQNFLLDLNLTGRIARASGPLEGATVVEVGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
R++ IE+D R CLD LA+ S P + GD + ++ + +
Sbjct: 67 ALGARRVIAIERDQR---CLDALAEVSDHYPGRLEVISGDALKVDVRPLVGDGE------ 117
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
+R++ NLP+N++T L+I W+ S L+F K + +V+
Sbjct: 118 ----VRVVANLPYNIATLLLIGWLSTDPWPPWFSSLTLMFQKEVAERIVA 163
>sp|Q2IX80|RSMA_RHOP2 Ribosomal RNA small subunit methyltransferase A OS=Rhodopseudomonas
palustris (strain HaA2) GN=rsmA PE=3 SV=1
Length = 287
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 78/143 (54%), Gaps = 10/143 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+IK + L A K L QNFL + LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLRDVIKRHDLAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE+D R L+ +A P + D M F + + R
Sbjct: 67 ATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMEFDPRPLLGGAR--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA 153
RI+ NLP+N++TPL+I W+ A
Sbjct: 118 -ARIVANLPYNIATPLLIGWLCA 139
>sp|C3M9C2|RSMA_RHISN Ribosomal RNA small subunit methyltransferase A OS=Rhizobium sp.
(strain NGR234) GN=rsmA PE=3 SV=1
Length = 296
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++V IE+DPR P L ++ P + GD + + + +EG
Sbjct: 67 ALGARKVVAIERDPRCLPALAEISAHYPGRLDVVEGDALKVDFERL---------AEG-- 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+RII NLP+NV T L++ W+
Sbjct: 116 PVRIIANLPYNVGTQLLVNWL 136
>sp|B6JGM4|RSMA_OLICO Ribosomal RNA small subunit methyltransferase A OS=Oligotropha
carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
GN=rsmA PE=3 SV=1
Length = 282
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I+ Y L A K L QNFLF+ LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLREVIRKYDLFARKSLGQNFLFDLNLTARIARAAGPLDDVTVIEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ +E+D R P L+ +A+ P + GD +F + +R
Sbjct: 67 ATGAKRVIAVERDERAIPALEEIARRYPGRLEIIHGDATTFDPTPLLQGER--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
RI+ NLP+N++T L+ W+
Sbjct: 118 -ARIVANLPYNIATLLLTGWLS 138
>sp|Q2N8W9|RSMA_ERYLH Ribosomal RNA small subunit methyltransferase A OS=Erythrobacter
litoralis (strain HTCC2594) GN=rsmA PE=3 SV=1
Length = 281
Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 8 LPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITR 67
+P +P +RD+I + L A K L QNFLF+ +L D+I G + V E+GPGPG +TR
Sbjct: 1 MPELPPLRDVIAKHGLSASKALGQNFLFDAQLLDRIAGIPGGLENRAVLEIGPGPGGLTR 60
Query: 68 SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127
++L + AR+ IE D R P L L++ P + GD M + E
Sbjct: 61 ALL-KAGARVTAIEMDRRCLPALAELSEVYPGKLSVIHGDAMKLDHAELMGEP------- 112
Query: 128 GLPGIRIIGNLPFNVSTPLIIKWI-------QAISENLLFPKHKRQLVVS 170
++ NLP+NV T L ++W+ Q S L+F + Q +VS
Sbjct: 113 ----FAVVANLPYNVGTALFVRWLGGETWPPQWTSLTLMFQQEVAQRIVS 158
>sp|Q164G1|RSMA_ROSDO Ribosomal RNA small subunit methyltransferase A OS=Roseobacter
denitrificans (strain ATCC 33942 / OCh 114) GN=rsmA PE=3
SV=1
Length = 280
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R +I+ + L A K + QNFL + LT KI R AG ++ +V E+GPGPG +TR +L
Sbjct: 7 LPPLRSVIRDHDLSARKSMGQNFLLDLNLTAKIARQAGDLSACDVLEIGPGPGGLTRGLL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ R++ IEKD R P L +A P + GD + + + P
Sbjct: 67 AQGARRVLAIEKDARCLPALAEIAAVYPGRLEVMNGDALEIDPLSALT-----------P 115
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
IR+ NLP+NV T L+++W+
Sbjct: 116 PIRVAANLPYNVGTELLVRWL 136
>sp|Q135P2|RSMA_RHOPS Ribosomal RNA small subunit methyltransferase A OS=Rhodopseudomonas
palustris (strain BisB5) GN=rsmA PE=3 SV=1
Length = 287
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT +I R AG + V E+GPGPG +TR++L
Sbjct: 7 LPPLRDVIRRHDLAARKSLGQNFLLDLNLTARIARAAGPLDDVTVVEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R++ IE+D R L+ +A P + D M F + +R
Sbjct: 67 ATGARRVIAIERDERALGALEEIAAHYPGRLEIVCADAMDFDPTPLLGGER--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+I+ NLP+N++TPL+I W+
Sbjct: 118 -AKIVANLPYNIATPLLIGWL 137
>sp|Q6G052|RSMA_BARQU Ribosomal RNA small subunit methyltransferase A OS=Bartonella
quintana (strain Toulouse) GN=rsmA PE=3 SV=1
Length = 276
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 77/141 (54%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I +Y L+A K L QNFLF+ LT KI AG I G V EVGPGPG +TR++L
Sbjct: 6 LPPLREVIDIYGLQAHKSLGQNFLFDLNLTSKIAHQAGNIEGKPVIEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A ++ IE+D R P L + + P + D + +F +
Sbjct: 66 AKG-ALVIAIERDERCIPALLAIEKHYPKKLKLICNDALKQNFSKLFETYPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RII NLP+N+ T L++ W+
Sbjct: 119 --RIIANLPYNIGTQLLLNWL 137
>sp|Q1RK29|RSMA_RICBR Ribosomal RNA small subunit methyltransferase A OS=Rickettsia
bellii (strain RML369-C) GN=rsmA PE=3 SV=1
Length = 268
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 16/179 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI +++ LK+ QNF+F+ L DKIVR +G + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAASHQIHPLKKHGQNFIFDGSLCDKIVRASGLEENSNVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ P L +IE D R P L+ + Q P ++ D + + ++ +
Sbjct: 62 HKNPKLLTVIETDERCIPLLNEIKQYHP-NLNIIKQDALKLKLSDLNTNK---------- 110
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
I II NLP+++ T L+I+W++ E+ L L ++ER C KP + Y +LSV
Sbjct: 111 -ITIISNLPYHIGTELVIRWLK---ESSLVASMTLMLQKEVVERICAKPSTKAYGRLSV 165
>sp|A6U7I6|RSMA_SINMW Ribosomal RNA small subunit methyltransferase A OS=Sinorhizobium
medicae (strain WSM419) GN=rsmA PE=3 SV=1
Length = 274
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + G V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLEGVTVIEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++V IE+D R P L + P + GD + + +
Sbjct: 67 ALGAKKVVAIERDSRCLPALAEIGAHYPERLDVVEGDALKVDFEALADGP---------- 116
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
+RII NLP+NV T L++ W+
Sbjct: 117 -VRIIANLPYNVGTQLLVNWL 136
>sp|A8GXS7|RSMA_RICB8 Ribosomal RNA small subunit methyltransferase A OS=Rickettsia
bellii (strain OSU 85-389) GN=rsmA PE=3 SV=1
Length = 268
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 16/179 (8%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PSI +++ LK+ QNF+F+ L DKIVR +G + V E+GPG G +TRSIL
Sbjct: 2 LPSIAKHAASHQIHPLKKHGQNFIFDGSLCDKIVRASGLEENSNVLEIGPGTGGLTRSIL 61
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
++ P L +IE D R P L+ + Q P ++ D + + ++ +
Sbjct: 62 HKNPKLLTVIETDERCIPLLNEIKQYHP-NLNIIKQDALKLKLSDLNTNK---------- 110
Query: 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPY-QLSV 188
I II NLP+++ T L+I+W++ E+ L L ++ER C KP + Y +LSV
Sbjct: 111 -ITIISNLPYHIGTELVIRWLK---ESSLVASMTLMLQKEVVERICAKPSTKAYGRLSV 165
>sp|Q2KA84|RSMA_RHIEC Ribosomal RNA small subunit methyltransferase A OS=Rhizobium etli
(strain CFN 42 / ATCC 51251) GN=rsmA PE=3 SV=1
Length = 275
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT K+ R AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKVARTAGALEETTVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ +E+D R P L +A P + GD + + + E
Sbjct: 67 ALGAKKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKTDFEALAPEGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++II NLP+NV T L++ W+
Sbjct: 118 -VKIIANLPYNVGTQLLVNWL 137
>sp|A9IRW8|RSMA_BART1 Ribosomal RNA small subunit methyltransferase A OS=Bartonella
tribocorum (strain CIP 105476 / IBS 506) GN=rsmA PE=3
SV=1
Length = 276
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I Y L+A K L QNFLF+ LT KI AGTI G V E+GPGPG +TR++L
Sbjct: 6 LPPLREVIDTYGLQAHKSLGQNFLFDLNLTSKIAHQAGTIEGKPVLEIGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + IE+D R P L + + P + D + +F +
Sbjct: 66 AKG-AIVTAIERDERCIPALLEIEKHYPNQLKLICNDALKQDFSKLFGSSPEKP------ 118
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
RII NLP+N+ T L++ W+
Sbjct: 119 --RIIANLPYNIGTQLLLNWL 137
>sp|Q1GT31|RSMA_SPHAL Ribosomal RNA small subunit methyltransferase A OS=Sphingopyxis
alaskensis (strain DSM 13593 / LMG 18877 / RB2256)
GN=rsmA PE=3 SV=1
Length = 271
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 11/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
MP +R+ ++++ L A K L QNFLF+ +L D+I G + G V EVGPGPG +TR++L
Sbjct: 1 MPPLRETVRVHGLSASKALGQNFLFDEQLLDRIAAIPGDLDGATVFEVGPGPGGLTRALL 60
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R AR++ +E+D R P L LA+A P + D M+ + + D
Sbjct: 61 -RTGARVIAVERDERCLPLLADLAEAFPGQLTVIADDAMAVDVDALTGGDP--------- 110
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
I+ NLP+NV T L +W++
Sbjct: 111 -YHIVANLPYNVGTALFTRWLE 131
>sp|Q1MJ01|RSMA_RHIL3 Ribosomal RNA small subunit methyltransferase A OS=Rhizobium
leguminosarum bv. viciae (strain 3841) GN=rsmA PE=3 SV=1
Length = 275
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT KI R AG + V EVGPGPG +TR+IL
Sbjct: 7 LPPLRDVIQRHGLDARKALGQNFLLDLNLTQKIARTAGALEDATVFEVGPGPGGLTRAIL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R P L +A P + GD + + + +
Sbjct: 67 ALGARKVIAIERDTRCLPALAEIADHYPGRLEVIEGDALKTDFETLAPQGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
I+II NLP+NV T L++ W+
Sbjct: 118 -IKIIANLPYNVGTQLLVNWL 137
>sp|Q3YS70|RSMA_EHRCJ Ribosomal RNA small subunit methyltransferase A OS=Ehrlichia canis
(strain Jake) GN=rsmA PE=3 SV=1
Length = 262
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 15/148 (10%)
Query: 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRF 86
K+LSQ F+ +TDKIV AG I+ + E+GPG G++T SILN+ P RL+ IEKD R
Sbjct: 11 KELSQCFISSSHITDKIVNYAGNISDYSIIEIGPGLGTMTYSILNKNPKRLISIEKDSRL 70
Query: 87 TPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146
P + F L D ++ ++ + P ++II NLP++++TPL
Sbjct: 71 MPIHKKIVDEFNGKYEFILSDALNIDLRTIIE-----------PPVKIIANLPYHIATPL 119
Query: 147 IIKWIQAI----SENLLFPKHKRQLVVS 170
++KWI I S L+F K +V+
Sbjct: 120 LMKWINYIDFFTSFTLMFQKEVADRIVA 147
>sp|Q11HG9|RSMA_MESSB Ribosomal RNA small subunit methyltransferase A OS=Mesorhizobium
sp. (strain BNC1) GN=rsmA PE=3 SV=1
Length = 275
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + LT +I R AG + V EVGPGPG +TR++L
Sbjct: 6 LPPLRDVIERHGLFARKALGQNFLLDLNLTRRIARTAGGLDNATVLEVGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
R+V IE+D R L+ +A P + GD M +
Sbjct: 66 MEGARRVVAIERDERCIAALEEIAAHYPGRLEIVAGDAMKADFAALAGNS---------G 116
Query: 131 GIRIIGNLPFNVSTPLIIKWI 151
++I+ NLP+N+ T L+I+W+
Sbjct: 117 DVKIVANLPYNIGTELLIRWL 137
>sp|B9JUV4|RSMA_AGRVS Ribosomal RNA small subunit methyltransferase A OS=Agrobacterium
vitis (strain S4 / ATCC BAA-846) GN=rsmA PE=3 SV=1
Length = 275
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 17/167 (10%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+I+ + L A K L QNFL + +T K+ R AG +T V EVGPGPG +TR++L
Sbjct: 7 LPPLRDVIQRHGLDAKKALGQNFLLDLNITQKVARTAGDLTNATVFEVGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+++ IE+D R P L ++ P + GD + + M +
Sbjct: 67 ALGAKKVIAIERDSRCLPALAEISDHYPGRLEVIEGDALKTDFEAMAPDGP--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQA-------ISENLLFPKHKRQLVVS 170
++I+ NLP+NV T L+I W+ S L+F K Q +V+
Sbjct: 118 -VKIVANLPYNVGTQLLINWLMPRQWPPFWDSLTLMFQKEVGQRIVA 163
>sp|A1US65|RSMA_BARBK Ribosomal RNA small subunit methyltransferase A OS=Bartonella
bacilliformis (strain ATCC 35685 / KC583) GN=rsmA PE=3
SV=1
Length = 276
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 11/146 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I Y L+A K L QNFLF+ LT KI R AG I G V E+GPGPG +TR++L
Sbjct: 6 LPPLREVINAYGLQANKSLGQNFLFDLNLTSKIARQAGNIEGKPVIEIGPGPGGLTRALL 65
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ A + +IE+D R P L + + P ++ D + + + SE P
Sbjct: 66 AKG-AIVTVIERDKRCLPALLEIEKHYPKKLNLIFDDALKQDLSKL---------SETYP 115
Query: 131 -GIRIIGNLPFNVSTPLIIKWIQAIS 155
RII NLP+N+ T L++ W+ S
Sbjct: 116 EKPRIIANLPYNIGTQLLLNWLLTTS 141
>sp|Q2W0V3|RSMA_MAGSA Ribosomal RNA small subunit methyltransferase A OS=Magnetospirillum
magneticum (strain AMB-1 / ATCC 700264) GN=rsmA PE=3
SV=1
Length = 281
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 11/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +R++I + L A K L Q+FLF+ LT +I R AG +T V E+GPGPG +TR++L
Sbjct: 4 LPPLREVIARHGLDARKSLGQHFLFDLNLTGRIARAAGDLTVGSVIEIGPGPGGLTRALL 63
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ +++ IE+D R + +A+A P + D M+ + R
Sbjct: 64 DAGARQVIAIERDDRAIAIQNEIAEAYPGRLEIMAADAMTVDAAELGEVPR--------- 114
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
RI+ NLP+N+ST L++ W++
Sbjct: 115 --RIVANLPYNISTALLLGWLR 134
>sp|Q215S4|RSMA_RHOPB Ribosomal RNA small subunit methyltransferase A OS=Rhodopseudomonas
palustris (strain BisB18) GN=rsmA PE=3 SV=1
Length = 286
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+P +RD+IK + L A K L QNFL + L +I R AG + G V E+GPGPG +TR++L
Sbjct: 7 LPPLRDVIKRHDLSARKSLGQNFLLDLNLLTRIARAAGPLDGATVIEIGPGPGGLTRALL 66
Query: 71 NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
A+++ IE+D R L +A P + D + + + R
Sbjct: 67 ALGAAKVIAIERDERALGALQEIAAHYPGRLEIVCADATIYDPRPLLGGAR--------- 117
Query: 131 GIRIIGNLPFNVSTPLIIKWIQ 152
+I+ NLP+N++TPL+I W+
Sbjct: 118 -AKIVANLPYNIATPLLIGWLS 138
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,203,027
Number of Sequences: 539616
Number of extensions: 3932932
Number of successful extensions: 9046
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 7681
Number of HSP's gapped (non-prelim): 828
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)