Query psy17126
Match_columns 240
No_of_seqs 346 out of 2638
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 22:34:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0821|consensus 100.0 5.3E-40 1.1E-44 277.2 14.7 217 4-220 3-324 (326)
2 COG0030 KsgA Dimethyladenosine 100.0 1.1E-35 2.4E-40 259.3 16.1 164 23-200 2-256 (259)
3 PRK00274 ksgA 16S ribosomal RN 100.0 2.5E-31 5.4E-36 235.1 17.3 129 10-154 1-129 (272)
4 PTZ00338 dimethyladenosine tra 100.0 8.4E-31 1.8E-35 234.1 15.6 118 20-153 5-124 (294)
5 PF00398 RrnaAD: Ribosomal RNA 100.0 2.1E-28 4.6E-33 215.3 12.1 118 23-152 2-119 (262)
6 PRK14896 ksgA 16S ribosomal RN 100.0 1.1E-27 2.5E-32 210.2 16.7 114 23-153 1-114 (258)
7 TIGR00755 ksgA dimethyladenosi 100.0 1.7E-27 3.6E-32 208.4 15.4 116 23-152 1-116 (253)
8 KOG0820|consensus 99.9 1.1E-27 2.3E-32 207.7 12.4 161 18-195 25-188 (315)
9 smart00650 rADc Ribosomal RNA 99.8 2.1E-19 4.6E-24 148.0 11.0 122 40-176 2-124 (169)
10 COG2263 Predicted RNA methylas 99.6 1.3E-14 2.9E-19 120.7 10.8 113 24-153 16-136 (198)
11 PHA03412 putative methyltransf 99.6 2E-14 4.4E-19 124.3 10.6 103 19-142 20-126 (241)
12 COG2518 Pcm Protein-L-isoaspar 99.5 5.9E-13 1.3E-17 113.0 10.7 95 29-138 51-146 (209)
13 COG4123 Predicted O-methyltran 99.4 2.3E-13 4.9E-18 118.5 7.9 103 29-145 25-130 (248)
14 PF05175 MTS: Methyltransferas 99.4 6.7E-13 1.4E-17 109.5 10.3 100 43-156 23-128 (170)
15 TIGR01177 conserved hypothetic 99.4 8.9E-13 1.9E-17 119.6 11.6 102 29-144 160-262 (329)
16 PRK14967 putative methyltransf 99.4 1.9E-12 4.1E-17 111.2 11.6 95 36-144 21-115 (223)
17 PRK14966 unknown domain/N5-glu 99.4 7.9E-13 1.7E-17 122.9 9.7 107 26-144 218-333 (423)
18 PHA03411 putative methyltransf 99.4 1.1E-12 2.4E-17 115.8 9.7 95 29-144 45-140 (279)
19 PF12847 Methyltransf_18: Meth 99.4 4E-12 8.7E-17 96.5 11.2 75 51-138 1-78 (112)
20 PF13659 Methyltransf_26: Meth 99.4 8.3E-13 1.8E-17 101.2 7.0 81 52-143 1-83 (117)
21 COG2226 UbiE Methylase involve 99.4 4.5E-12 9.8E-17 110.1 11.2 84 28-115 32-117 (238)
22 PRK13942 protein-L-isoaspartat 99.4 9.6E-12 2.1E-16 106.3 12.9 96 29-138 55-153 (212)
23 TIGR00080 pimt protein-L-isoas 99.4 7.4E-12 1.6E-16 106.9 12.1 108 33-153 59-169 (215)
24 PF01209 Ubie_methyltran: ubiE 99.3 3.7E-12 8.1E-17 110.5 8.6 93 28-137 28-123 (233)
25 COG2890 HemK Methylase of poly 99.3 6.4E-12 1.4E-16 111.8 10.2 76 54-144 113-190 (280)
26 PRK10258 biotin biosynthesis p 99.3 3.5E-12 7.5E-17 111.0 8.3 106 18-141 9-114 (251)
27 PRK13944 protein-L-isoaspartat 99.3 2.1E-11 4.5E-16 103.6 12.5 110 29-152 51-164 (205)
28 TIGR00537 hemK_rel_arch HemK-r 99.3 9.7E-12 2.1E-16 103.0 9.8 84 44-143 12-95 (179)
29 PRK15001 SAM-dependent 23S rib 99.3 1.9E-11 4E-16 113.0 12.1 101 40-154 217-326 (378)
30 PRK10909 rsmD 16S rRNA m(2)G96 99.3 2.2E-11 4.7E-16 103.4 11.6 93 39-143 40-134 (199)
31 PRK13168 rumA 23S rRNA m(5)U19 99.3 1.9E-11 4.2E-16 115.1 11.8 104 39-153 285-389 (443)
32 PRK09328 N5-glutamine S-adenos 99.3 2.7E-11 6E-16 106.3 11.5 103 27-143 74-188 (275)
33 PF01135 PCMT: Protein-L-isoas 99.3 9.4E-12 2E-16 106.4 8.1 98 29-140 51-151 (209)
34 TIGR00536 hemK_fam HemK family 99.3 2.4E-11 5.2E-16 108.2 11.0 104 27-144 79-196 (284)
35 PTZ00098 phosphoethanolamine N 99.3 2.6E-11 5.6E-16 106.9 11.1 104 21-138 20-125 (263)
36 TIGR03533 L3_gln_methyl protei 99.3 2.5E-11 5.5E-16 108.2 11.1 81 50-144 120-203 (284)
37 COG2230 Cfa Cyclopropane fatty 99.3 1.9E-11 4.1E-16 108.3 10.1 90 23-112 35-135 (283)
38 PF13649 Methyltransf_25: Meth 99.3 2E-11 4.2E-16 91.8 8.6 87 55-154 1-93 (101)
39 COG3963 Phospholipid N-methylt 99.3 2.1E-11 4.7E-16 99.7 9.2 113 27-153 24-141 (194)
40 PRK11207 tellurite resistance 99.3 4.8E-11 1E-15 100.8 11.3 97 43-154 22-120 (197)
41 PRK03522 rumB 23S rRNA methylu 99.3 2E-11 4.4E-16 110.2 9.6 108 34-154 152-264 (315)
42 TIGR03534 RF_mod_PrmC protein- 99.3 4.5E-11 9.7E-16 103.3 11.4 91 39-144 76-168 (251)
43 COG2242 CobL Precorrin-6B meth 99.3 3.8E-11 8.3E-16 100.1 10.3 78 34-111 17-96 (187)
44 TIGR02752 MenG_heptapren 2-hep 99.3 5.7E-11 1.2E-15 101.8 11.6 92 36-140 30-124 (231)
45 PF13847 Methyltransf_31: Meth 99.3 3.5E-11 7.6E-16 97.0 9.5 84 50-145 2-89 (152)
46 TIGR03704 PrmC_rel_meth putati 99.2 5.7E-11 1.2E-15 104.1 11.3 93 39-144 73-167 (251)
47 PRK01544 bifunctional N5-gluta 99.2 2.6E-11 5.6E-16 116.1 9.8 80 52-145 139-221 (506)
48 KOG3420|consensus 99.2 9.7E-12 2.1E-16 99.6 5.6 105 24-142 18-126 (185)
49 TIGR00138 gidB 16S rRNA methyl 99.2 5.8E-11 1.3E-15 99.2 10.3 74 51-138 42-117 (181)
50 PLN02244 tocopherol O-methyltr 99.2 6.2E-11 1.3E-15 108.2 11.2 89 38-139 100-195 (340)
51 TIGR00477 tehB tellurite resis 99.2 8.1E-11 1.8E-15 99.2 10.9 97 42-153 21-118 (195)
52 PRK00312 pcm protein-L-isoaspa 99.2 1.4E-10 3E-15 98.6 12.3 93 33-139 60-153 (212)
53 PLN02233 ubiquinone biosynthes 99.2 1.1E-10 2.3E-15 102.9 11.8 91 36-139 58-154 (261)
54 PRK11805 N5-glutamine S-adenos 99.2 5.9E-11 1.3E-15 107.0 10.2 77 53-143 135-214 (307)
55 TIGR02469 CbiT precorrin-6Y C5 99.2 2.6E-10 5.7E-15 87.5 12.5 93 36-140 4-98 (124)
56 PF02353 CMAS: Mycolic acid cy 99.2 4.1E-11 8.9E-16 106.3 8.9 74 39-112 50-125 (273)
57 PF02384 N6_Mtase: N-6 DNA Met 99.2 6.5E-11 1.4E-15 106.2 9.3 115 17-143 13-138 (311)
58 PF01170 UPF0020: Putative RNA 99.2 1E-10 2.2E-15 97.6 9.6 104 29-145 6-121 (179)
59 PRK08287 cobalt-precorrin-6Y C 99.2 3.9E-10 8.5E-15 94.0 12.6 92 33-139 13-106 (187)
60 PLN02336 phosphoethanolamine N 99.2 2.8E-10 6.1E-15 107.8 13.2 102 25-139 238-341 (475)
61 PRK00107 gidB 16S rRNA methylt 99.2 1.8E-10 3.9E-15 96.8 10.2 75 50-138 44-120 (187)
62 PRK09489 rsmC 16S ribosomal RN 99.2 2.7E-10 5.8E-15 104.2 11.8 87 41-142 186-273 (342)
63 PRK14968 putative methyltransf 99.2 3.3E-10 7.2E-15 93.4 10.7 90 42-146 14-106 (188)
64 TIGR02987 met_A_Alw26 type II 99.2 9.6E-11 2.1E-15 112.6 8.6 108 27-143 1-125 (524)
65 TIGR02085 meth_trns_rumB 23S r 99.1 1.7E-10 3.8E-15 106.5 9.9 108 33-153 211-323 (374)
66 PF06325 PrmA: Ribosomal prote 99.1 3E-10 6.4E-15 101.8 10.9 86 49-155 159-246 (295)
67 TIGR02021 BchM-ChlM magnesium 99.1 6.1E-10 1.3E-14 95.0 11.4 98 38-152 40-142 (219)
68 PRK14103 trans-aconitate 2-met 99.1 1.4E-10 3.1E-15 101.3 7.5 84 38-141 16-100 (255)
69 PRK13943 protein-L-isoaspartat 99.1 4.4E-10 9.5E-15 101.9 10.7 80 32-111 61-143 (322)
70 TIGR00479 rumA 23S rRNA (uraci 99.1 2.7E-10 5.8E-15 106.9 9.5 104 39-152 280-384 (431)
71 PRK15128 23S rRNA m(5)C1962 me 99.1 3E-10 6.5E-15 105.7 9.5 102 33-145 204-308 (396)
72 KOG2904|consensus 99.1 3.1E-10 6.7E-15 99.5 8.8 99 39-146 133-237 (328)
73 PRK01683 trans-aconitate 2-met 99.1 2.3E-10 5.1E-15 99.8 8.2 86 37-140 17-103 (258)
74 PLN02672 methionine S-methyltr 99.1 3.1E-10 6.7E-15 116.0 10.2 106 27-144 83-217 (1082)
75 PRK07402 precorrin-6B methylas 99.1 4.6E-10 1E-14 94.4 9.3 77 34-110 23-101 (196)
76 PRK15451 tRNA cmo(5)U34 methyl 99.1 8.4E-10 1.8E-14 96.2 11.0 78 49-141 54-136 (247)
77 PRK10901 16S rRNA methyltransf 99.1 6.1E-10 1.3E-14 104.6 10.6 100 33-143 226-326 (427)
78 PRK11036 putative S-adenosyl-L 99.1 5.2E-10 1.1E-14 97.8 9.2 92 40-145 34-128 (255)
79 TIGR03587 Pse_Me-ase pseudamin 99.1 1.2E-09 2.6E-14 92.9 11.0 88 50-155 42-131 (204)
80 PRK05785 hypothetical protein; 99.1 4.3E-10 9.4E-15 97.1 8.2 86 35-140 33-120 (226)
81 TIGR00095 RNA methyltransferas 99.1 7.2E-10 1.6E-14 93.3 9.3 102 32-142 29-133 (189)
82 PRK00377 cbiT cobalt-precorrin 99.1 2.3E-09 5.1E-14 90.3 12.0 93 34-138 23-119 (198)
83 PRK11727 23S rRNA mA1618 methy 99.1 7.3E-10 1.6E-14 100.4 9.4 87 51-146 114-205 (321)
84 PRK12335 tellurite resistance 99.1 1.4E-09 3E-14 96.9 11.0 90 50-154 119-209 (287)
85 COG2813 RsmC 16S RNA G1207 met 99.1 1.2E-09 2.6E-14 97.3 10.4 100 41-155 148-253 (300)
86 PRK00121 trmB tRNA (guanine-N( 99.0 5.5E-10 1.2E-14 94.7 7.6 78 51-139 40-120 (202)
87 TIGR00446 nop2p NOL1/NOP2/sun 99.0 1.2E-09 2.6E-14 96.3 9.5 86 44-142 64-152 (264)
88 PF08241 Methyltransf_11: Meth 99.0 1.2E-09 2.7E-14 79.4 8.0 70 56-140 1-70 (95)
89 PRK04266 fibrillarin; Provisio 99.0 2.8E-09 6.1E-14 92.2 11.2 85 45-140 66-151 (226)
90 COG2264 PrmA Ribosomal protein 99.0 2.3E-09 5.1E-14 95.8 10.8 86 50-155 161-250 (300)
91 PRK08317 hypothetical protein; 99.0 3.1E-09 6.8E-14 90.2 11.1 89 39-140 7-97 (241)
92 PF03848 TehB: Tellurite resis 99.0 3.8E-09 8.2E-14 89.1 10.8 99 42-155 21-120 (192)
93 TIGR00091 tRNA (guanine-N(7)-) 99.0 1E-09 2.2E-14 92.3 7.4 79 51-139 16-96 (194)
94 PRK07580 Mg-protoporphyrin IX 99.0 4.8E-09 1E-13 89.5 11.4 96 40-152 49-150 (230)
95 TIGR00406 prmA ribosomal prote 99.0 4.4E-09 9.5E-14 93.9 11.6 75 50-139 158-234 (288)
96 COG4106 Tam Trans-aconitate me 99.0 7.1E-10 1.5E-14 94.4 6.0 96 40-153 19-118 (257)
97 PRK14903 16S rRNA methyltransf 99.0 2E-09 4.3E-14 101.3 9.6 98 33-142 219-319 (431)
98 TIGR02072 BioC biotin biosynth 99.0 1.4E-09 2.9E-14 92.7 7.8 99 26-140 6-108 (240)
99 PRK06202 hypothetical protein; 99.0 3.7E-09 7.9E-14 91.1 10.5 92 48-154 57-154 (232)
100 PLN02336 phosphoethanolamine N 99.0 3.1E-09 6.8E-14 100.7 11.0 105 35-152 21-126 (475)
101 TIGR00740 methyltransferase, p 99.0 3.9E-09 8.5E-14 91.3 10.7 64 50-113 52-120 (239)
102 PRK14902 16S rRNA methyltransf 99.0 2.4E-09 5.2E-14 101.0 9.9 91 39-141 238-331 (444)
103 TIGR00452 methyltransferase, p 99.0 3.6E-09 7.9E-14 95.6 10.5 103 28-145 94-204 (314)
104 PRK11783 rlmL 23S rRNA m(2)G24 99.0 1.7E-09 3.8E-14 107.3 9.1 98 33-144 522-622 (702)
105 PRK00216 ubiE ubiquinone/menaq 99.0 7.1E-09 1.5E-13 88.4 11.7 89 36-137 36-128 (239)
106 PF03602 Cons_hypoth95: Conser 99.0 2.1E-09 4.5E-14 90.1 7.9 109 35-152 24-138 (183)
107 PRK15068 tRNA mo(5)U34 methylt 99.0 3.3E-09 7.2E-14 96.2 9.7 92 41-146 112-206 (322)
108 PRK11705 cyclopropane fatty ac 99.0 7.1E-09 1.5E-13 96.2 11.9 83 39-139 155-237 (383)
109 PLN02585 magnesium protoporphy 99.0 5.8E-09 1.3E-13 94.4 11.1 72 38-110 128-208 (315)
110 PRK11873 arsM arsenite S-adeno 98.9 4.8E-09 1E-13 92.4 9.7 83 47-142 73-158 (272)
111 PRK05031 tRNA (uracil-5-)-meth 98.9 3.6E-09 7.9E-14 97.4 9.3 116 35-153 187-311 (362)
112 PLN02396 hexaprenyldihydroxybe 98.9 2.4E-09 5.2E-14 97.1 8.0 75 50-138 130-206 (322)
113 PF05401 NodS: Nodulation prot 98.9 3.1E-09 6.7E-14 89.5 8.0 94 46-155 38-133 (201)
114 PRK14901 16S rRNA methyltransf 98.9 4.9E-09 1.1E-13 98.7 9.6 101 33-142 234-337 (434)
115 COG2227 UbiG 2-polyprenyl-3-me 98.9 1.8E-09 3.9E-14 93.2 6.0 90 34-137 39-131 (243)
116 COG1041 Predicted DNA modifica 98.9 6.4E-09 1.4E-13 94.3 9.6 114 18-146 165-280 (347)
117 PRK14904 16S rRNA methyltransf 98.9 6.6E-09 1.4E-13 98.1 10.1 90 40-143 239-331 (445)
118 TIGR02143 trmA_only tRNA (urac 98.9 6E-09 1.3E-13 95.7 9.4 110 38-153 185-302 (353)
119 PRK11783 rlmL 23S rRNA m(2)G24 98.9 1E-08 2.2E-13 102.0 11.3 100 33-143 171-316 (702)
120 PRK00517 prmA ribosomal protei 98.9 1.3E-08 2.7E-13 89.1 10.7 48 49-96 117-164 (250)
121 PRK06922 hypothetical protein; 98.9 6.3E-09 1.4E-13 101.4 9.6 83 47-140 414-497 (677)
122 TIGR02716 C20_methyl_CrtF C-20 98.9 2.7E-08 5.9E-13 89.2 12.6 100 39-153 137-239 (306)
123 PF08704 GCD14: tRNA methyltra 98.9 1.6E-08 3.5E-13 88.5 10.4 95 35-139 24-122 (247)
124 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 1.6E-08 3.5E-13 85.3 10.2 90 36-139 24-115 (223)
125 PRK14121 tRNA (guanine-N(7)-)- 98.9 1.2E-08 2.6E-13 94.4 9.9 87 43-140 114-202 (390)
126 COG2519 GCD14 tRNA(1-methylade 98.9 1.4E-08 3E-13 88.5 9.6 89 37-139 80-172 (256)
127 PRK11088 rrmA 23S rRNA methylt 98.9 1.4E-08 3E-13 89.8 9.9 72 50-138 84-159 (272)
128 TIGR00563 rsmB ribosomal RNA s 98.9 1.3E-08 2.9E-13 95.5 10.2 98 35-143 222-322 (426)
129 COG0116 Predicted N6-adenine-s 98.8 1.3E-08 2.8E-13 93.5 9.2 97 33-142 173-311 (381)
130 PLN02490 MPBQ/MSBQ methyltrans 98.8 1.6E-08 3.4E-13 92.4 9.7 88 38-140 99-188 (340)
131 TIGR03438 probable methyltrans 98.8 3.7E-08 8.1E-13 88.5 11.8 69 40-110 54-126 (301)
132 PRK11188 rrmJ 23S rRNA methylt 98.8 1.8E-08 3.9E-13 86.0 9.2 84 44-143 43-131 (209)
133 KOG1540|consensus 98.8 3.7E-08 7.9E-13 85.8 9.8 86 26-115 79-175 (296)
134 PF07021 MetW: Methionine bios 98.8 2E-08 4.2E-13 84.4 7.8 79 41-138 5-83 (193)
135 PRK00050 16S rRNA m(4)C1402 me 98.8 2.3E-08 5E-13 89.6 8.7 77 35-112 3-81 (296)
136 TIGR02081 metW methionine bios 98.8 2.3E-08 4.9E-13 83.9 8.0 81 41-140 5-85 (194)
137 PLN02781 Probable caffeoyl-CoA 98.8 6.7E-08 1.5E-12 83.9 11.0 98 34-138 51-152 (234)
138 COG2265 TrmA SAM-dependent met 98.8 3E-08 6.5E-13 93.3 9.3 120 34-164 272-401 (432)
139 PF05958 tRNA_U5-meth_tr: tRNA 98.7 2.7E-08 5.8E-13 91.4 7.9 131 31-164 173-315 (352)
140 smart00828 PKS_MT Methyltransf 98.7 4.1E-08 8.9E-13 83.7 8.3 60 53-112 1-63 (224)
141 PF09445 Methyltransf_15: RNA 98.7 2E-08 4.3E-13 82.6 6.1 80 53-143 1-82 (163)
142 cd02440 AdoMet_MTases S-adenos 98.7 9.1E-08 2E-12 69.0 8.9 77 54-142 1-78 (107)
143 COG0742 N6-adenine-specific me 98.7 7.2E-08 1.6E-12 80.8 9.4 96 37-142 27-126 (187)
144 PRK04148 hypothetical protein; 98.7 7.7E-08 1.7E-12 76.6 9.0 89 39-146 4-94 (134)
145 KOG1270|consensus 98.7 2.5E-08 5.5E-13 87.1 6.4 43 52-95 90-132 (282)
146 PRK05134 bifunctional 3-demeth 98.7 1.8E-07 3.9E-12 80.3 11.4 91 36-139 33-123 (233)
147 smart00138 MeTrc Methyltransfe 98.7 8.3E-08 1.8E-12 84.8 8.9 91 50-153 98-227 (264)
148 PF08242 Methyltransf_12: Meth 98.7 8.2E-09 1.8E-13 76.9 2.2 86 56-153 1-88 (99)
149 COG4076 Predicted RNA methylas 98.7 2.1E-08 4.6E-13 83.8 4.6 86 28-114 9-95 (252)
150 KOG1500|consensus 98.7 6.7E-08 1.4E-12 87.2 8.1 84 41-139 167-252 (517)
151 PRK00811 spermidine synthase; 98.7 7.7E-08 1.7E-12 85.8 8.4 76 51-138 76-158 (283)
152 PF02475 Met_10: Met-10+ like- 98.7 9.3E-08 2E-12 81.2 8.2 109 19-143 69-182 (200)
153 TIGR03840 TMPT_Se_Te thiopurin 98.6 2E-07 4.3E-12 79.9 10.1 70 43-113 26-108 (213)
154 KOG3191|consensus 98.6 1.5E-07 3.2E-12 78.3 8.7 82 51-146 43-126 (209)
155 TIGR01983 UbiG ubiquinone bios 98.6 1.1E-07 2.5E-12 80.8 8.4 91 35-138 25-120 (224)
156 PRK04457 spermidine synthase; 98.6 3.5E-07 7.7E-12 80.7 11.4 87 40-138 54-144 (262)
157 PTZ00146 fibrillarin; Provisio 98.6 2.7E-07 5.9E-12 82.5 10.2 90 38-139 116-211 (293)
158 PRK13255 thiopurine S-methyltr 98.6 3.8E-07 8.1E-12 78.5 10.1 69 43-112 29-110 (218)
159 PF05185 PRMT5: PRMT5 arginine 98.6 3.5E-07 7.6E-12 86.5 10.6 73 52-138 187-266 (448)
160 KOG1499|consensus 98.6 1.4E-07 3.1E-12 85.4 7.4 75 49-137 58-134 (346)
161 PF13489 Methyltransf_23: Meth 98.6 2.7E-07 5.9E-12 73.6 8.2 49 40-89 10-59 (161)
162 TIGR00438 rrmJ cell division p 98.6 3.6E-07 7.7E-12 76.3 9.1 77 47-138 28-106 (188)
163 PF01596 Methyltransf_3: O-met 98.6 1.3E-07 2.9E-12 80.6 6.5 82 50-138 44-129 (205)
164 PLN03075 nicotianamine synthas 98.5 3.8E-07 8.2E-12 81.8 9.1 82 43-137 115-202 (296)
165 TIGR00478 tly hemolysin TlyA f 98.5 4.3E-07 9.3E-12 78.7 8.7 50 40-89 63-113 (228)
166 PRK04338 N(2),N(2)-dimethylgua 98.5 7.1E-07 1.5E-11 82.9 10.4 109 32-154 37-148 (382)
167 PRK03612 spermidine synthase; 98.5 3.1E-07 6.7E-12 88.5 7.1 80 50-141 296-384 (521)
168 PLN02476 O-methyltransferase 98.4 1.2E-06 2.6E-11 77.9 9.5 100 33-139 100-203 (278)
169 PLN02366 spermidine synthase 98.4 1.4E-06 3E-11 78.8 9.3 91 39-140 76-175 (308)
170 COG0286 HsdM Type I restrictio 98.4 1.2E-06 2.6E-11 83.8 9.3 117 16-141 152-275 (489)
171 TIGR00417 speE spermidine synt 98.4 1.5E-06 3.1E-11 77.0 9.1 80 51-142 72-157 (270)
172 KOG2915|consensus 98.4 5.3E-06 1.1E-10 73.1 12.1 111 40-161 94-209 (314)
173 KOG1541|consensus 98.4 1.3E-06 2.8E-11 74.9 7.4 79 26-109 20-103 (270)
174 KOG1271|consensus 98.4 1.7E-06 3.6E-11 72.2 7.8 74 39-112 51-131 (227)
175 PRK01581 speE spermidine synth 98.3 2.5E-06 5.4E-11 78.5 9.6 80 50-141 149-237 (374)
176 KOG2187|consensus 98.3 1.2E-06 2.5E-11 82.9 7.5 117 28-152 356-478 (534)
177 PF08123 DOT1: Histone methyla 98.3 5.6E-07 1.2E-11 76.8 4.7 91 20-113 14-115 (205)
178 PF02390 Methyltransf_4: Putat 98.3 1.6E-06 3.5E-11 73.3 7.3 77 53-139 19-97 (195)
179 COG2520 Predicted methyltransf 98.3 1.4E-06 3.1E-11 79.4 6.9 85 42-141 181-267 (341)
180 PF10294 Methyltransf_16: Puta 98.3 3.6E-06 7.9E-11 69.7 8.1 61 49-110 43-108 (173)
181 PF08003 Methyltransf_9: Prote 98.3 5.4E-06 1.2E-10 74.3 9.3 117 14-146 72-199 (315)
182 COG4122 Predicted O-methyltran 98.2 5.2E-06 1.1E-10 71.4 8.6 89 37-136 45-138 (219)
183 COG4976 Predicted methyltransf 98.2 5.7E-07 1.2E-11 77.5 2.7 75 14-92 87-165 (287)
184 COG1092 Predicted SAM-dependen 98.2 3.4E-06 7.4E-11 78.4 8.0 109 33-152 201-313 (393)
185 KOG2730|consensus 98.2 1.4E-06 3E-11 74.6 4.7 109 31-150 73-185 (263)
186 COG2521 Predicted archaeal met 98.2 1.1E-06 2.3E-11 75.9 3.9 91 45-146 128-222 (287)
187 KOG4300|consensus 98.2 2.8E-06 6E-11 72.2 6.0 81 46-139 71-154 (252)
188 COG0220 Predicted S-adenosylme 98.1 5.9E-06 1.3E-10 71.6 6.9 60 52-111 49-110 (227)
189 PF13679 Methyltransf_32: Meth 98.1 1.7E-05 3.6E-10 63.4 8.8 61 50-110 24-93 (141)
190 TIGR01444 fkbM_fam methyltrans 98.1 7.4E-06 1.6E-10 64.7 6.7 58 54-111 1-60 (143)
191 PRK10742 putative methyltransf 98.1 1.3E-05 2.8E-10 70.1 8.3 89 41-142 76-176 (250)
192 TIGR00308 TRM1 tRNA(guanine-26 98.1 2.5E-05 5.4E-10 72.4 10.4 90 53-155 46-138 (374)
193 PF05724 TPMT: Thiopurine S-me 98.1 1.1E-05 2.4E-10 69.5 7.5 77 36-114 23-112 (218)
194 PLN02589 caffeoyl-CoA O-methyl 98.1 1.9E-05 4.1E-10 69.2 9.1 78 34-111 62-143 (247)
195 PF10672 Methyltrans_SAM: S-ad 98.1 1.3E-05 2.9E-10 71.6 8.2 95 33-139 107-204 (286)
196 PRK13256 thiopurine S-methyltr 98.1 3.6E-05 7.8E-10 66.6 10.1 77 35-113 28-117 (226)
197 PRK11933 yebU rRNA (cytosine-C 98.0 3E-05 6.4E-10 73.9 9.4 88 41-140 101-193 (470)
198 TIGR00006 S-adenosyl-methyltra 98.0 2.5E-05 5.5E-10 70.4 8.4 81 32-112 1-82 (305)
199 PF05971 Methyltransf_10: Prot 98.0 3.8E-05 8.3E-10 68.9 8.9 90 52-149 103-196 (299)
200 KOG2671|consensus 97.9 1.2E-05 2.5E-10 73.0 5.0 118 14-145 172-299 (421)
201 PLN02823 spermine synthase 97.9 5E-05 1.1E-09 69.4 9.1 77 51-139 103-185 (336)
202 PF00891 Methyltransf_2: O-met 97.9 0.00013 2.8E-09 63.0 10.3 95 41-156 90-185 (241)
203 PRK11760 putative 23S rRNA C24 97.9 8E-05 1.7E-09 68.0 8.9 118 49-186 209-341 (357)
204 KOG1661|consensus 97.8 7.2E-05 1.6E-09 63.8 7.8 91 34-137 63-169 (237)
205 KOG2899|consensus 97.6 6.4E-05 1.4E-09 65.4 4.7 48 49-96 56-104 (288)
206 PF01861 DUF43: Protein of unk 97.6 0.00035 7.7E-09 60.8 8.8 110 22-144 13-126 (243)
207 PF05219 DREV: DREV methyltran 97.6 0.00039 8.4E-09 61.2 8.3 64 28-92 66-134 (265)
208 COG0421 SpeE Spermidine syntha 97.6 0.00032 7E-09 62.7 8.0 75 53-139 78-158 (282)
209 KOG3010|consensus 97.5 9.2E-05 2E-09 64.3 4.3 52 37-92 21-73 (261)
210 KOG2361|consensus 97.5 0.00014 3E-09 63.2 5.2 80 31-110 48-133 (264)
211 PRK01544 bifunctional N5-gluta 97.5 0.0003 6.6E-09 67.7 7.3 60 51-110 347-408 (506)
212 PF01795 Methyltransf_5: MraW 97.4 0.00026 5.6E-09 64.0 5.6 80 33-112 2-82 (310)
213 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.4 0.00062 1.4E-08 60.8 8.0 91 41-142 75-168 (283)
214 COG0275 Predicted S-adenosylme 97.3 0.00095 2.1E-08 59.9 8.3 80 33-112 5-86 (314)
215 PF04816 DUF633: Family of unk 97.3 0.0015 3.3E-08 55.7 9.2 85 55-156 1-89 (205)
216 PF01564 Spermine_synth: Sperm 97.3 0.00061 1.3E-08 59.7 6.9 78 51-140 76-160 (246)
217 COG3897 Predicted methyltransf 97.3 0.00058 1.3E-08 57.7 6.4 98 40-152 68-166 (218)
218 COG0144 Sun tRNA and rRNA cyto 97.3 0.0015 3.2E-08 60.3 9.6 100 33-142 138-241 (355)
219 COG0357 GidB Predicted S-adeno 97.3 0.00082 1.8E-08 57.8 7.1 61 52-112 68-130 (215)
220 PF03291 Pox_MCEL: mRNA cappin 97.3 0.00063 1.4E-08 62.1 6.5 98 51-155 62-173 (331)
221 COG1189 Predicted rRNA methyla 97.3 0.0018 3.8E-08 56.3 8.8 91 40-147 67-160 (245)
222 PF02527 GidB: rRNA small subu 97.2 0.0015 3.2E-08 54.9 7.9 70 54-137 51-122 (184)
223 PF01728 FtsJ: FtsJ-like methy 97.2 0.00045 9.8E-09 57.0 4.6 78 51-142 23-103 (181)
224 cd00315 Cyt_C5_DNA_methylase C 97.2 0.00079 1.7E-08 59.8 6.2 72 54-141 2-73 (275)
225 TIGR03439 methyl_EasF probable 97.1 0.0024 5.2E-08 58.1 8.3 68 41-110 68-143 (319)
226 KOG3115|consensus 97.0 0.0013 2.9E-08 55.9 5.3 66 51-117 60-134 (249)
227 KOG2940|consensus 97.0 0.0021 4.5E-08 55.9 6.4 75 51-139 72-146 (325)
228 KOG1663|consensus 97.0 0.0037 8E-08 54.0 8.0 98 32-136 54-155 (237)
229 PHA01634 hypothetical protein 96.9 0.0016 3.4E-08 51.6 4.9 46 51-96 28-73 (156)
230 PF09243 Rsm22: Mitochondrial 96.9 0.0042 9E-08 55.2 8.2 61 37-97 19-81 (274)
231 KOG1501|consensus 96.9 0.0019 4.2E-08 60.6 5.9 58 53-110 68-127 (636)
232 PF07091 FmrO: Ribosomal RNA m 96.7 0.0039 8.6E-08 54.6 6.0 63 50-112 104-167 (251)
233 TIGR00497 hsdM type I restrict 96.7 0.0078 1.7E-07 57.9 8.6 103 28-142 193-305 (501)
234 PF12147 Methyltransf_20: Puta 96.5 0.074 1.6E-06 47.8 13.1 62 50-111 134-200 (311)
235 PF05891 Methyltransf_PK: AdoM 96.4 0.008 1.7E-07 51.7 6.3 93 51-156 55-149 (218)
236 KOG4058|consensus 96.4 0.005 1.1E-07 50.1 4.4 78 39-116 60-139 (199)
237 COG0293 FtsJ 23S rRNA methylas 96.4 0.012 2.6E-07 50.2 7.0 81 49-144 43-125 (205)
238 PF00145 DNA_methylase: C-5 cy 96.4 0.0059 1.3E-07 54.2 5.4 74 54-144 2-78 (335)
239 PF06080 DUF938: Protein of un 96.3 0.021 4.6E-07 48.7 8.2 77 35-111 9-88 (204)
240 PF01555 N6_N4_Mtase: DNA meth 96.3 0.012 2.6E-07 49.2 6.5 57 34-92 175-231 (231)
241 COG2384 Predicted SAM-dependen 96.3 0.066 1.4E-06 46.1 10.8 97 42-156 9-108 (226)
242 KOG3987|consensus 96.2 0.0017 3.7E-08 55.6 0.9 73 19-92 77-152 (288)
243 PRK00536 speE spermidine synth 96.2 0.026 5.6E-07 50.0 8.4 100 25-141 35-150 (262)
244 PRK11524 putative methyltransf 96.2 0.018 3.8E-07 51.3 7.2 57 37-95 195-251 (284)
245 COG4262 Predicted spermidine s 96.0 0.02 4.2E-07 53.0 6.8 78 50-139 288-374 (508)
246 COG0500 SmtA SAM-dependent met 96.0 0.028 6.1E-07 41.5 6.6 55 55-110 52-109 (257)
247 COG1568 Predicted methyltransf 96.0 0.0087 1.9E-07 53.3 4.2 118 14-144 107-235 (354)
248 PF02636 Methyltransf_28: Puta 96.0 0.041 9E-07 48.0 8.5 45 52-96 19-72 (252)
249 PRK10611 chemotaxis methyltran 95.9 0.047 1E-06 49.0 8.6 60 33-92 96-165 (287)
250 TIGR00675 dcm DNA-methyltransf 95.9 0.012 2.5E-07 53.3 4.9 68 55-139 1-68 (315)
251 PF01269 Fibrillarin: Fibrilla 95.9 0.045 9.8E-07 47.3 8.1 90 38-139 57-152 (229)
252 KOG1975|consensus 95.9 0.014 3E-07 53.1 5.1 68 50-117 116-190 (389)
253 PF05148 Methyltransf_8: Hypot 95.8 0.032 6.9E-07 47.9 6.6 73 39-140 59-132 (219)
254 KOG2912|consensus 95.7 0.028 6.2E-07 51.0 6.4 99 39-143 88-191 (419)
255 COG1565 Uncharacterized conser 95.6 0.04 8.7E-07 50.7 7.1 71 26-96 39-131 (370)
256 COG3129 Predicted SAM-dependen 95.5 0.042 9.2E-07 47.9 6.3 89 51-147 78-170 (292)
257 PRK13699 putative methylase; P 95.4 0.057 1.2E-06 46.7 7.2 59 36-96 149-207 (227)
258 KOG2651|consensus 95.4 0.044 9.6E-07 50.8 6.6 43 50-92 152-194 (476)
259 PLN02232 ubiquinone biosynthes 95.3 0.024 5.1E-07 46.1 4.3 48 78-138 1-52 (160)
260 PF11599 AviRa: RRNA methyltra 94.6 0.06 1.3E-06 46.4 4.8 57 39-95 35-98 (246)
261 KOG2078|consensus 94.5 0.018 3.9E-07 54.0 1.5 90 19-111 217-311 (495)
262 PF05206 TRM13: Methyltransfer 94.4 0.26 5.6E-06 43.6 8.6 79 38-117 5-91 (259)
263 PF04445 SAM_MT: Putative SAM- 94.3 0.06 1.3E-06 46.9 4.3 86 42-140 64-161 (234)
264 KOG0822|consensus 94.0 0.12 2.6E-06 49.8 5.9 78 37-114 350-436 (649)
265 COG0270 Dcm Site-specific DNA 94.0 0.14 3E-06 46.6 6.2 78 53-144 4-84 (328)
266 COG1889 NOP1 Fibrillarin-like 93.9 0.14 3.1E-06 43.7 5.8 101 38-154 60-165 (231)
267 KOG3045|consensus 93.8 0.14 2.9E-06 45.5 5.5 111 39-182 167-289 (325)
268 KOG3924|consensus 93.7 0.14 2.9E-06 47.8 5.7 93 19-114 163-266 (419)
269 PF10237 N6-adenineMlase: Prob 93.7 1 2.3E-05 37.0 10.3 104 29-152 2-107 (162)
270 PF03059 NAS: Nicotianamine sy 93.5 0.47 1E-05 42.4 8.6 60 53-112 122-187 (276)
271 PRK10458 DNA cytosine methylas 93.4 0.48 1E-05 45.4 8.9 91 52-143 88-185 (467)
272 PF13578 Methyltransf_24: Meth 93.0 0.057 1.2E-06 40.3 1.7 54 56-111 1-61 (106)
273 KOG4589|consensus 92.9 0.14 3.1E-06 43.3 4.1 80 49-144 67-150 (232)
274 PF02254 TrkA_N: TrkA-N domain 92.9 0.45 9.8E-06 35.8 6.6 47 60-112 4-53 (116)
275 PF04989 CmcI: Cephalosporin h 92.8 0.25 5.3E-06 42.3 5.4 80 30-112 11-98 (206)
276 KOG1227|consensus 92.6 0.026 5.7E-07 50.8 -0.7 63 51-113 194-259 (351)
277 PF07757 AdoMet_MTase: Predict 92.6 0.11 2.4E-06 39.9 2.8 46 39-85 42-91 (112)
278 PF01739 CheR: CheR methyltran 92.2 0.24 5.3E-06 41.9 4.7 42 51-92 31-82 (196)
279 KOG1709|consensus 92.2 0.63 1.4E-05 40.3 7.1 72 39-111 90-161 (271)
280 KOG1122|consensus 92.1 0.44 9.6E-06 44.8 6.6 67 46-112 236-305 (460)
281 KOG2198|consensus 91.9 0.52 1.1E-05 43.6 6.7 92 46-143 150-249 (375)
282 PF03141 Methyltransf_29: Puta 91.7 0.2 4.4E-06 48.0 4.0 35 39-73 101-139 (506)
283 COG1352 CheR Methylase of chem 91.6 0.49 1.1E-05 42.1 6.1 41 52-92 97-147 (268)
284 PF11899 DUF3419: Protein of u 90.6 0.63 1.4E-05 43.4 6.0 50 45-95 29-78 (380)
285 COG1064 AdhP Zn-dependent alco 90.5 2.1 4.6E-05 39.3 9.3 49 45-93 160-209 (339)
286 PTZ00357 methyltransferase; Pr 90.5 0.69 1.5E-05 46.3 6.4 84 53-139 702-801 (1072)
287 PF07942 N2227: N2227-like pro 90.5 0.64 1.4E-05 41.4 5.8 39 51-90 56-94 (270)
288 PF04672 Methyltransf_19: S-ad 89.7 0.66 1.4E-05 41.2 5.1 60 53-112 70-134 (267)
289 KOG2920|consensus 88.8 0.3 6.4E-06 43.6 2.3 50 39-88 101-153 (282)
290 PF07669 Eco57I: Eco57I restri 88.7 0.23 4.9E-06 37.7 1.3 15 130-144 2-16 (106)
291 PLN02668 indole-3-acetate carb 88.6 0.29 6.3E-06 45.7 2.2 89 16-117 17-119 (386)
292 KOG3178|consensus 88.2 0.74 1.6E-05 42.3 4.5 56 52-111 178-233 (342)
293 PF05050 Methyltransf_21: Meth 87.9 1.1 2.3E-05 35.4 4.9 52 57-108 1-61 (167)
294 KOG2360|consensus 87.8 0.84 1.8E-05 42.5 4.7 70 43-112 205-277 (413)
295 PF06962 rRNA_methylase: Putat 87.7 1.3 2.8E-05 35.6 5.1 54 76-140 1-56 (140)
296 PRK03659 glutathione-regulated 87.4 1.7 3.8E-05 42.8 7.0 52 53-112 401-455 (601)
297 PRK10669 putative cation:proto 86.7 1.9 4.2E-05 41.9 6.8 115 53-187 418-539 (558)
298 KOG2352|consensus 86.7 1.7 3.7E-05 41.6 6.2 65 51-115 47-112 (482)
299 PF03686 UPF0146: Uncharacteri 86.4 3.1 6.8E-05 32.8 6.5 87 40-153 5-93 (127)
300 TIGR00027 mthyl_TIGR00027 meth 85.7 6.5 0.00014 34.6 9.0 99 52-156 82-185 (260)
301 PF04072 LCM: Leucine carboxyl 85.2 1.1 2.3E-05 37.1 3.6 97 53-153 80-181 (183)
302 cd08283 FDH_like_1 Glutathione 84.9 3.5 7.5E-05 37.9 7.3 48 45-92 178-227 (386)
303 KOG2793|consensus 84.9 3.2 6.9E-05 36.5 6.6 81 51-141 86-173 (248)
304 PF11968 DUF3321: Putative met 84.8 1.5 3.3E-05 37.7 4.5 101 29-155 21-131 (219)
305 COG2933 Predicted SAM-dependen 84.6 3.5 7.6E-05 36.9 6.7 115 50-186 210-341 (358)
306 cd00401 AdoHcyase S-adenosyl-L 84.6 4.5 9.6E-05 38.2 7.9 63 30-92 179-243 (413)
307 COG1063 Tdh Threonine dehydrog 83.9 3.6 7.8E-05 37.6 6.9 65 28-92 143-211 (350)
308 PRK09496 trkA potassium transp 83.7 3.4 7.3E-05 38.6 6.8 135 37-187 214-354 (453)
309 KOG1269|consensus 82.4 1.1 2.4E-05 41.6 2.9 69 48-116 107-177 (364)
310 COG1748 LYS9 Saccharopine dehy 82.3 6.6 0.00014 36.8 7.9 139 53-217 2-157 (389)
311 KOG1596|consensus 81.3 4 8.8E-05 36.0 5.7 90 39-140 141-236 (317)
312 PRK15431 ferrous iron transpor 81.0 1.2 2.6E-05 32.2 2.0 55 10-64 3-60 (78)
313 PRK07454 short chain dehydroge 80.9 11 0.00024 31.6 8.4 84 51-140 5-93 (241)
314 PRK07904 short chain dehydroge 80.8 11 0.00025 32.2 8.5 85 50-140 6-97 (253)
315 KOG1331|consensus 80.3 1 2.2E-05 40.4 1.7 66 40-115 36-101 (293)
316 COG0863 DNA modification methy 80.2 6.8 0.00015 34.3 7.0 60 35-96 207-266 (302)
317 PRK05867 short chain dehydroge 79.9 9.7 0.00021 32.3 7.7 85 51-140 8-96 (253)
318 PLN02819 lysine-ketoglutarate 79.4 15 0.00031 38.9 10.0 96 52-161 569-679 (1042)
319 PF02086 MethyltransfD12: D12 78.8 3 6.5E-05 35.8 4.3 55 39-94 8-62 (260)
320 KOG0024|consensus 78.7 5.9 0.00013 36.3 6.1 50 43-92 161-212 (354)
321 KOG2352|consensus 78.3 0.63 1.4E-05 44.5 -0.2 60 51-110 295-356 (482)
322 COG4798 Predicted methyltransf 78.0 1.4 3.1E-05 37.6 1.9 42 43-84 40-83 (238)
323 PRK13394 3-hydroxybutyrate deh 77.7 12 0.00026 31.6 7.7 60 51-112 6-69 (262)
324 CHL00137 rps13 ribosomal prote 77.4 4.8 0.0001 31.5 4.6 35 166-200 28-62 (122)
325 PRK07523 gluconate 5-dehydroge 76.2 13 0.00029 31.4 7.5 86 51-141 9-98 (255)
326 PF07279 DUF1442: Protein of u 76.1 18 0.00038 31.3 8.0 89 14-109 11-106 (218)
327 COG5379 BtaA S-adenosylmethion 75.7 5.8 0.00012 36.1 5.1 47 47-94 59-105 (414)
328 PF06831 H2TH: Formamidopyrimi 75.7 4.8 0.0001 29.8 4.0 39 166-204 42-80 (92)
329 cd08254 hydroxyacyl_CoA_DH 6-h 75.7 11 0.00024 33.1 7.0 45 48-92 162-207 (338)
330 TIGR03201 dearomat_had 6-hydro 75.0 12 0.00027 33.5 7.4 47 46-92 161-208 (349)
331 TIGR03629 arch_S13P archaeal r 74.8 4 8.8E-05 32.9 3.6 45 166-210 32-76 (144)
332 TIGR03631 bact_S13 30S ribosom 74.6 5.8 0.00013 30.6 4.3 35 166-200 26-60 (113)
333 PF02005 TRM: N2,N2-dimethylgu 74.2 7.5 0.00016 36.3 5.7 92 51-155 49-145 (377)
334 PRK05179 rpsM 30S ribosomal pr 74.1 6 0.00013 31.0 4.3 35 166-200 28-62 (122)
335 cd05188 MDR Medium chain reduc 74.1 17 0.00036 30.5 7.6 43 50-92 133-176 (271)
336 PRK07478 short chain dehydroge 73.8 19 0.00041 30.5 7.8 84 51-139 5-92 (254)
337 PRK07063 short chain dehydroge 73.6 19 0.00041 30.6 7.8 83 51-139 6-95 (260)
338 PRK08217 fabG 3-ketoacyl-(acyl 73.5 21 0.00045 29.8 8.0 83 51-139 4-91 (253)
339 PRK12826 3-ketoacyl-(acyl-carr 73.4 18 0.0004 30.1 7.6 86 51-142 5-95 (251)
340 TIGR02356 adenyl_thiF thiazole 72.9 21 0.00045 30.0 7.7 33 51-83 20-54 (202)
341 PF01234 NNMT_PNMT_TEMT: NNMT/ 72.4 2 4.3E-05 38.0 1.4 45 50-94 55-99 (256)
342 COG0771 MurD UDP-N-acetylmuram 72.2 37 0.00079 32.5 9.9 88 52-156 7-95 (448)
343 COG0099 RpsM Ribosomal protein 72.0 5 0.00011 31.3 3.4 35 166-200 28-62 (121)
344 PRK06194 hypothetical protein; 72.0 21 0.00047 30.7 7.9 83 52-140 6-93 (287)
345 KOG2811|consensus 71.7 11 0.00025 35.1 6.1 66 51-116 182-251 (420)
346 PRK03562 glutathione-regulated 71.5 13 0.00028 36.9 7.0 55 52-112 400-455 (621)
347 PRK06949 short chain dehydroge 71.4 18 0.0004 30.5 7.2 84 51-139 8-95 (258)
348 PRK08589 short chain dehydroge 71.2 23 0.00049 30.6 7.8 84 51-140 5-92 (272)
349 COG0569 TrkA K+ transport syst 71.2 33 0.00071 29.4 8.7 116 54-184 2-121 (225)
350 PRK04184 DNA topoisomerase VI 71.0 9.6 0.00021 37.2 5.8 63 139-202 238-308 (535)
351 COG1255 Uncharacterized protei 70.4 26 0.00057 27.4 7.0 51 53-114 15-66 (129)
352 PRK05650 short chain dehydroge 70.4 22 0.00048 30.4 7.6 81 54-140 2-87 (270)
353 TIGR00936 ahcY adenosylhomocys 70.2 21 0.00045 33.7 7.7 56 32-87 174-231 (406)
354 PRK05866 short chain dehydroge 69.9 24 0.00053 31.0 7.9 84 51-140 39-127 (293)
355 PRK06124 gluconate 5-dehydroge 69.8 21 0.00046 30.1 7.3 84 51-140 10-98 (256)
356 PRK08277 D-mannonate oxidoredu 69.6 26 0.00056 30.1 7.8 84 51-139 9-96 (278)
357 PRK06935 2-deoxy-D-gluconate 3 69.1 29 0.00063 29.4 8.0 84 51-140 14-101 (258)
358 PRK07677 short chain dehydroge 68.6 25 0.00055 29.7 7.5 58 53-111 2-62 (252)
359 PRK09424 pntA NAD(P) transhydr 68.6 13 0.00028 36.1 6.2 45 48-92 161-206 (509)
360 PF00416 Ribosomal_S13: Riboso 68.5 10 0.00022 28.7 4.5 35 166-200 26-60 (107)
361 PTZ00134 40S ribosomal protein 68.1 9 0.00019 31.3 4.2 35 166-200 41-75 (154)
362 PRK12829 short chain dehydroge 67.6 27 0.00058 29.5 7.4 60 50-112 9-71 (264)
363 PRK08213 gluconate 5-dehydroge 67.1 25 0.00055 29.8 7.2 85 51-140 11-99 (259)
364 PRK08643 acetoin reductase; Va 66.9 35 0.00075 28.8 8.0 82 53-140 3-89 (256)
365 KOG0022|consensus 66.9 16 0.00034 33.6 5.9 50 43-92 184-235 (375)
366 PRK08862 short chain dehydroge 66.5 30 0.00065 29.2 7.5 83 51-138 4-91 (227)
367 PRK06172 short chain dehydroge 66.2 33 0.00072 28.8 7.7 84 51-140 6-94 (253)
368 PRK08085 gluconate 5-dehydroge 66.2 31 0.00066 29.2 7.5 85 51-140 8-96 (254)
369 PF03492 Methyltransf_7: SAM d 66.1 15 0.00032 33.7 5.7 56 49-117 14-73 (334)
370 PRK04053 rps13p 30S ribosomal 65.8 12 0.00026 30.4 4.5 44 166-209 36-80 (149)
371 PRK06720 hypothetical protein; 65.7 37 0.00081 27.6 7.6 87 51-142 15-105 (169)
372 PRK11524 putative methyltransf 65.6 3.9 8.4E-05 36.3 1.8 33 99-142 7-39 (284)
373 TIGR02818 adh_III_F_hyde S-(hy 65.5 26 0.00056 31.8 7.3 48 45-92 179-228 (368)
374 PRK07666 fabG 3-ketoacyl-(acyl 65.4 29 0.00062 29.0 7.1 84 52-140 7-94 (239)
375 PRK07533 enoyl-(acyl carrier p 65.3 31 0.00068 29.5 7.5 83 51-139 9-97 (258)
376 COG1867 TRM1 N2,N2-dimethylgua 65.2 43 0.00094 31.3 8.5 91 52-155 53-145 (380)
377 PRK07326 short chain dehydroge 65.1 26 0.00057 29.1 6.8 59 51-111 5-66 (237)
378 TIGR02822 adh_fam_2 zinc-bindi 65.0 31 0.00067 30.9 7.6 48 45-92 159-207 (329)
379 PRK10445 endonuclease VIII; Pr 65.0 13 0.00029 32.7 5.1 39 166-204 170-208 (263)
380 PRK09291 short chain dehydroge 65.0 35 0.00075 28.7 7.6 57 53-111 3-63 (257)
381 PF03435 Saccharop_dh: Sacchar 64.3 29 0.00062 31.9 7.4 87 55-156 1-93 (386)
382 PRK07791 short chain dehydroge 64.3 44 0.00096 29.1 8.3 84 51-139 5-101 (286)
383 PRK06113 7-alpha-hydroxysteroi 64.0 39 0.00084 28.6 7.7 60 51-112 10-73 (255)
384 PRK12481 2-deoxy-D-gluconate 3 63.7 33 0.00071 29.2 7.2 82 51-140 7-93 (251)
385 PRK07035 short chain dehydroge 63.2 40 0.00087 28.3 7.7 85 51-140 7-95 (252)
386 COG4301 Uncharacterized conser 63.2 29 0.00063 30.9 6.7 62 48-109 75-143 (321)
387 cd08237 ribitol-5-phosphate_DH 63.0 23 0.0005 31.8 6.4 45 48-92 160-207 (341)
388 PF00076 RRM_1: RNA recognitio 62.9 8.4 0.00018 25.4 2.7 24 133-156 1-24 (70)
389 TIGR03206 benzo_BadH 2-hydroxy 62.5 46 0.001 27.8 7.9 83 52-140 3-90 (250)
390 PF00106 adh_short: short chai 62.5 30 0.00065 26.9 6.4 84 54-141 2-91 (167)
391 PRK07097 gluconate 5-dehydroge 62.4 47 0.001 28.3 8.0 85 51-140 9-97 (265)
392 PRK01103 formamidopyrimidine/5 61.8 16 0.00034 32.4 5.0 39 166-204 174-212 (274)
393 TIGR01963 PHB_DH 3-hydroxybuty 61.7 33 0.00071 28.7 6.8 58 54-112 3-63 (255)
394 PRK13945 formamidopyrimidine-D 61.3 16 0.00036 32.5 5.0 39 166-204 183-221 (282)
395 PLN02253 xanthoxin dehydrogena 61.3 32 0.0007 29.5 6.8 58 51-111 17-78 (280)
396 PRK14810 formamidopyrimidine-D 61.1 17 0.00038 32.2 5.1 37 166-202 173-209 (272)
397 cd08255 2-desacetyl-2-hydroxye 60.9 38 0.00081 28.9 7.2 48 45-92 91-140 (277)
398 COG3510 CmcI Cephalosporin hyd 60.8 27 0.00059 29.9 5.9 59 51-113 69-132 (237)
399 PRK07062 short chain dehydroge 60.7 44 0.00095 28.4 7.5 84 51-139 7-96 (265)
400 TIGR01832 kduD 2-deoxy-D-gluco 59.9 57 0.0012 27.2 8.0 83 51-140 4-90 (248)
401 PRK09072 short chain dehydroge 59.5 49 0.0011 28.1 7.6 83 51-140 4-90 (263)
402 KOG3350|consensus 59.4 35 0.00076 28.8 6.2 91 29-140 50-145 (217)
403 PLN02989 cinnamyl-alcohol dehy 59.4 49 0.0011 29.1 7.8 61 51-112 4-69 (325)
404 PRK12823 benD 1,6-dihydroxycyc 59.1 53 0.0011 27.7 7.7 83 51-139 7-93 (260)
405 PRK14811 formamidopyrimidine-D 59.0 20 0.00043 31.7 5.1 37 166-202 162-198 (269)
406 PRK09880 L-idonate 5-dehydroge 59.0 45 0.00097 29.8 7.5 48 45-92 163-212 (343)
407 PRK07231 fabG 3-ketoacyl-(acyl 58.9 52 0.0011 27.4 7.6 83 52-140 5-91 (251)
408 PRK09242 tropinone reductase; 58.9 65 0.0014 27.2 8.2 86 51-141 8-99 (257)
409 cd08281 liver_ADH_like1 Zinc-d 58.6 37 0.0008 30.8 7.0 48 45-92 185-234 (371)
410 TIGR03451 mycoS_dep_FDH mycoth 58.5 35 0.00076 30.7 6.8 48 45-92 170-219 (358)
411 cd01487 E1_ThiF_like E1_ThiF_l 58.0 51 0.0011 27.0 7.1 31 54-84 1-33 (174)
412 PRK12475 thiamine/molybdopteri 58.0 43 0.00092 30.7 7.2 34 51-84 23-58 (338)
413 PLN02740 Alcohol dehydrogenase 56.9 39 0.00084 30.9 6.9 48 45-92 192-241 (381)
414 COG2961 ComJ Protein involved 56.6 1E+02 0.0022 27.4 8.9 78 56-144 93-170 (279)
415 PRK06139 short chain dehydroge 56.5 55 0.0012 29.5 7.7 85 51-140 6-94 (330)
416 cd08245 CAD Cinnamyl alcohol d 56.5 56 0.0012 28.7 7.6 47 46-92 157-204 (330)
417 PRK08945 putative oxoacyl-(acy 56.5 42 0.00091 28.1 6.6 62 50-112 10-75 (247)
418 PLN03209 translocon at the inn 56.3 52 0.0011 32.6 7.8 81 47-139 75-168 (576)
419 KOG1201|consensus 56.3 66 0.0014 29.2 7.9 96 51-152 37-143 (300)
420 PRK08340 glucose-1-dehydrogena 56.0 56 0.0012 27.7 7.4 79 54-139 2-85 (259)
421 PRK13699 putative methylase; P 55.9 6.6 0.00014 33.8 1.5 32 101-143 2-33 (227)
422 TIGR03366 HpnZ_proposed putati 55.8 46 0.001 28.8 6.9 48 45-92 114-163 (280)
423 PF04378 RsmJ: Ribosomal RNA s 55.6 15 0.00033 32.2 3.7 80 56-146 62-141 (245)
424 PLN03154 putative allyl alcoho 55.3 47 0.001 30.0 7.0 46 46-91 153-200 (348)
425 PRK12743 oxidoreductase; Provi 55.2 54 0.0012 27.8 7.1 84 52-140 2-90 (256)
426 PRK08594 enoyl-(acyl carrier p 55.1 48 0.001 28.4 6.8 84 51-139 6-96 (257)
427 PRK07102 short chain dehydroge 55.1 45 0.00099 27.9 6.6 58 53-111 2-63 (243)
428 PRK13656 trans-2-enoyl-CoA red 55.1 1.2E+02 0.0025 28.7 9.6 85 51-141 40-142 (398)
429 PRK06114 short chain dehydroge 54.7 69 0.0015 27.0 7.7 85 51-140 7-96 (254)
430 cd08261 Zn_ADH7 Alcohol dehydr 54.5 56 0.0012 28.8 7.4 48 45-92 153-201 (337)
431 PRK07774 short chain dehydroge 54.4 63 0.0014 27.0 7.4 84 51-140 5-93 (250)
432 PF12692 Methyltransf_17: S-ad 54.4 33 0.00072 28.0 5.2 45 37-82 15-60 (160)
433 PRK12429 3-hydroxybutyrate deh 54.1 63 0.0014 27.0 7.3 60 52-112 4-66 (258)
434 COG1062 AdhC Zn-dependent alco 54.1 43 0.00094 31.0 6.5 52 41-92 175-228 (366)
435 KOG2782|consensus 53.9 11 0.00024 32.9 2.5 57 37-93 29-86 (303)
436 PRK07814 short chain dehydroge 53.7 73 0.0016 27.1 7.7 60 51-112 9-72 (263)
437 KOG1098|consensus 53.7 14 0.00029 36.9 3.3 36 49-84 42-79 (780)
438 TIGR00577 fpg formamidopyrimid 53.6 24 0.00052 31.2 4.7 38 166-203 174-211 (272)
439 PRK07984 enoyl-(acyl carrier p 53.4 69 0.0015 27.6 7.6 84 51-140 5-94 (262)
440 PRK07109 short chain dehydroge 53.3 82 0.0018 28.3 8.3 84 51-140 7-95 (334)
441 PRK05876 short chain dehydroge 53.3 70 0.0015 27.7 7.6 84 51-140 5-93 (275)
442 PRK08339 short chain dehydroge 53.2 69 0.0015 27.4 7.5 82 51-138 7-93 (263)
443 PRK05653 fabG 3-ketoacyl-(acyl 53.0 68 0.0015 26.4 7.3 84 52-140 5-92 (246)
444 PRK06505 enoyl-(acyl carrier p 52.8 66 0.0014 27.8 7.4 83 51-139 6-94 (271)
445 cd08232 idonate-5-DH L-idonate 52.7 62 0.0013 28.5 7.4 46 47-92 161-208 (339)
446 PRK08267 short chain dehydroge 52.7 60 0.0013 27.4 7.0 81 54-141 3-88 (260)
447 PRK08251 short chain dehydroge 52.5 60 0.0013 27.1 6.9 58 53-111 3-65 (248)
448 COG3315 O-Methyltransferase in 52.3 57 0.0012 29.3 7.0 112 40-156 81-197 (297)
449 PF09645 F-112: F-112 protein; 52.2 15 0.00033 27.6 2.7 31 187-217 34-64 (110)
450 PRK07890 short chain dehydroge 52.0 78 0.0017 26.5 7.6 59 51-111 4-66 (258)
451 PRK08644 thiamine biosynthesis 51.2 99 0.0021 26.2 8.0 33 51-83 27-61 (212)
452 PRK07806 short chain dehydroge 51.2 1.1E+02 0.0024 25.4 8.4 83 51-139 5-93 (248)
453 PRK05854 short chain dehydroge 51.1 80 0.0017 28.0 7.8 61 51-112 13-78 (313)
454 PRK08303 short chain dehydroge 50.7 98 0.0021 27.5 8.3 82 51-138 7-103 (305)
455 TIGR01289 LPOR light-dependent 50.3 83 0.0018 27.9 7.8 84 52-139 3-90 (314)
456 PRK05476 S-adenosyl-L-homocyst 50.2 60 0.0013 30.8 7.0 55 33-87 192-248 (425)
457 PF13651 EcoRI_methylase: Aden 50.2 9 0.0002 35.0 1.5 27 130-156 135-161 (336)
458 cd08239 THR_DH_like L-threonin 50.1 63 0.0014 28.6 7.0 49 44-92 156-206 (339)
459 PF00107 ADH_zinc_N: Zinc-bind 49.6 28 0.00061 26.1 4.0 32 61-92 1-32 (130)
460 PRK06125 short chain dehydroge 49.6 1.1E+02 0.0024 25.8 8.1 59 51-111 6-69 (259)
461 TIGR01052 top6b DNA topoisomer 49.6 37 0.00081 32.9 5.6 62 138-200 228-300 (488)
462 PRK08690 enoyl-(acyl carrier p 49.4 62 0.0013 27.7 6.6 84 51-140 5-94 (261)
463 TIGR02622 CDP_4_6_dhtase CDP-g 49.1 61 0.0013 29.0 6.8 58 52-111 4-64 (349)
464 PRK06181 short chain dehydroge 48.9 99 0.0022 26.1 7.8 58 53-112 2-63 (263)
465 PRK08415 enoyl-(acyl carrier p 48.9 1E+02 0.0022 26.7 8.0 84 51-140 4-93 (274)
466 cd08230 glucose_DH Glucose deh 48.8 62 0.0014 29.0 6.8 43 49-91 170-216 (355)
467 PRK07576 short chain dehydroge 48.8 1E+02 0.0022 26.3 7.9 59 51-111 8-70 (264)
468 PRK08993 2-deoxy-D-gluconate 3 48.7 90 0.002 26.3 7.5 83 51-140 9-95 (253)
469 PRK07688 thiamine/molybdopteri 48.7 74 0.0016 29.1 7.3 34 51-84 23-58 (339)
470 PRK12939 short chain dehydroge 48.5 1.1E+02 0.0024 25.3 8.0 61 51-112 6-69 (250)
471 TIGR03325 BphB_TodD cis-2,3-di 48.4 79 0.0017 26.8 7.1 56 51-111 4-63 (262)
472 cd08301 alcohol_DH_plants Plan 48.3 73 0.0016 28.7 7.2 48 45-92 181-230 (369)
473 PRK08264 short chain dehydroge 48.3 61 0.0013 26.9 6.3 53 51-111 5-61 (238)
474 PF05575 V_cholerae_RfbT: Vibr 48.2 23 0.0005 29.7 3.5 57 36-94 66-123 (286)
475 PLN02662 cinnamyl-alcohol dehy 47.8 1.1E+02 0.0023 26.8 8.0 60 52-112 4-68 (322)
476 PRK01747 mnmC bifunctional tRN 47.8 35 0.00077 33.9 5.4 34 51-84 57-103 (662)
477 PRK06182 short chain dehydroge 47.7 69 0.0015 27.4 6.6 79 52-141 3-85 (273)
478 cd08295 double_bond_reductase_ 47.7 79 0.0017 28.0 7.2 48 45-92 145-194 (338)
479 PLN02494 adenosylhomocysteinas 47.4 85 0.0018 30.4 7.6 51 37-87 238-290 (477)
480 PLN02780 ketoreductase/ oxidor 47.1 64 0.0014 28.9 6.5 59 51-110 52-115 (320)
481 cd00755 YgdL_like Family of ac 46.9 79 0.0017 27.3 6.8 33 52-84 11-45 (231)
482 cd08294 leukotriene_B4_DH_like 46.3 89 0.0019 27.2 7.3 48 45-92 137-186 (329)
483 TIGR01082 murC UDP-N-acetylmur 46.3 1.2E+02 0.0026 28.5 8.5 70 61-152 9-80 (448)
484 TIGR02415 23BDH acetoin reduct 46.0 86 0.0019 26.2 6.9 81 54-140 2-87 (254)
485 TIGR02825 B4_12hDH leukotriene 45.7 72 0.0016 28.0 6.6 48 45-92 132-181 (325)
486 cd00757 ThiF_MoeB_HesA_family 45.4 1.1E+02 0.0023 26.1 7.4 33 52-84 21-55 (228)
487 PRK07792 fabG 3-ketoacyl-(acyl 45.3 1.1E+02 0.0025 26.9 7.8 83 51-139 11-98 (306)
488 PRK06198 short chain dehydroge 44.7 81 0.0018 26.5 6.6 59 51-111 5-68 (260)
489 cd05285 sorbitol_DH Sorbitol d 43.9 98 0.0021 27.4 7.2 48 45-92 156-205 (343)
490 PRK07453 protochlorophyllide o 43.4 1.2E+02 0.0025 26.8 7.6 60 51-112 5-68 (322)
491 PRK08278 short chain dehydroge 43.3 1.4E+02 0.003 25.7 7.9 84 51-140 5-100 (273)
492 TIGR01712 phage_N6A_met phage 43.2 24 0.00052 29.2 2.8 21 133-153 64-84 (166)
493 PRK06128 oxidoreductase; Provi 43.2 96 0.0021 27.1 7.0 84 51-140 54-144 (300)
494 PRK06603 enoyl-(acyl carrier p 43.1 1.2E+02 0.0027 25.8 7.5 84 51-140 7-96 (260)
495 cd08234 threonine_DH_like L-th 43.1 77 0.0017 27.7 6.4 48 45-92 153-202 (334)
496 KOG2798|consensus 42.9 25 0.00054 32.3 3.1 50 39-89 134-187 (369)
497 PRK06997 enoyl-(acyl carrier p 42.9 84 0.0018 26.9 6.4 83 51-139 5-93 (260)
498 PRK06079 enoyl-(acyl carrier p 42.8 78 0.0017 26.9 6.2 82 51-140 6-93 (252)
499 PRK07825 short chain dehydroge 42.7 1.1E+02 0.0023 26.1 7.1 77 52-138 5-86 (273)
500 KOG0114|consensus 42.5 26 0.00057 27.0 2.7 23 131-153 19-41 (124)
No 1
>KOG0821|consensus
Probab=100.00 E-value=5.3e-40 Score=277.17 Aligned_cols=217 Identities=52% Similarity=0.898 Sum_probs=198.5
Q ss_pred ccCCCCCCccHHHHHHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCC
Q psy17126 4 KALRLPPMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid 83 (240)
.+.|+||||++|+++++|.+.++|.++||||.|.++.++|++.++.-..+.|.|||+|+|.+|+.+++.+..++..||+|
T Consensus 3 S~~RLPPlPtiRe~i~lYRLqA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D 82 (326)
T KOG0821|consen 3 STCRLPPLPTIREIIKLYRLQAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKD 82 (326)
T ss_pred CcccCCCCchHHHHHHHHHHHHHHHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeec
Confidence 45699999999999999999999999999999999999999999988889999999999999999999877899999999
Q ss_pred cchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc-------
Q psy17126 84 PRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE------- 156 (240)
Q Consensus 84 ~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~------- 156 (240)
+++++.++...+..+.++.++++|++.++..+.+++...+.|++..+...|||||||+|+||+|.||++.++.
T Consensus 83 ~RFip~LQ~L~EAa~~~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~y 162 (326)
T KOG0821|consen 83 TRFIPGLQMLSEAAPGKLRIHHGDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVY 162 (326)
T ss_pred cccChHHHHHhhcCCcceEEeccccceehHHhhcchhhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeee
Confidence 9999999987776678999999999999999988887888999877778999999999999999999999875
Q ss_pred ----------------------------------cccccchh--------------------------------------
Q psy17126 157 ----------------------------------NLLFPKHK-------------------------------------- 164 (240)
Q Consensus 157 ----------------------------------~~~~~~~~-------------------------------------- 164 (240)
|+|++.++
T Consensus 163 grt~mTLTFQ~EVAeRlCaP~~~~qRsRlSvMSQy~~EP~M~FtI~G~~FVPkPQVDVGVV~f~P~K~P~~~~~F~lvEk 242 (326)
T KOG0821|consen 163 GRTQMTLTFQKEVAERLCAPTGSKQRSRLSVMSQYLCEPRMIFTIPGQAFVPKPQVDVGVVHFTPLKQPKIEQPFKLVEK 242 (326)
T ss_pred cceeeEEehHHHHHHHhcccccccchhhHHHHHHHhcCceEEEEecCccccCCCcceeeeEEeeecCCccccCCHHHHHH
Confidence 44444333
Q ss_pred -------------------------h-hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCeeeEeccCCCC
Q psy17126 165 -------------------------R-QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTPG 218 (240)
Q Consensus 165 -------------------------~-~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~~~~~~p~~~~~~~~~~~~ 218 (240)
+ +..+++++.+.|||+.|+-+|++|||.+|++.|.++|.+.|+++-||||..+|
T Consensus 243 V~R~vF~~RQKY~~rGl~TL~PeE~r~E~~~~Ll~~~~idpT~r~~~L~iEQf~~LAE~Y~E~c~~~p~~~ay~~r~~kn 322 (326)
T KOG0821|consen 243 VVRNVFQFRQKYCHRGLRTLFPEEQRLESTGRLLELADIDPTLRPRQLSIEQFKSLAEVYREMCDEDPQLFAYNFRKSKN 322 (326)
T ss_pred HHHHHHHHHHHHHHccccccCCHHHHHHHHHHHHHHhcCCCccCceeeeHHHHHHHHHHHHHHhccChhhhhhccccccc
Confidence 2 57888999999999999999999999999999999999999999999999887
Q ss_pred CC
Q psy17126 219 DI 220 (240)
Q Consensus 219 ~~ 220 (240)
-+
T Consensus 323 ~e 324 (326)
T KOG0821|consen 323 EE 324 (326)
T ss_pred cc
Confidence 43
No 2
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-35 Score=259.30 Aligned_cols=164 Identities=30% Similarity=0.481 Sum_probs=142.3
Q ss_pred chhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeE
Q psy17126 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVH 102 (240)
Q Consensus 23 ~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~ 102 (240)
.+++|++|||||+|+.++++|++.+++.++++|||||||.|+||..|++++ .+|+|||+|+++++.+++... ..+|++
T Consensus 2 ~k~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~-~~~n~~ 79 (259)
T COG0030 2 FRPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA-ARVTAIEIDRRLAEVLKERFA-PYDNLT 79 (259)
T ss_pred CCCCCCcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEEeCHHHHHHHHHhcc-cccceE
Confidence 356799999999999999999999999999999999999999999999995 799999999999999998664 348999
Q ss_pred EEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc--------------------------
Q psy17126 103 FHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE-------------------------- 156 (240)
Q Consensus 103 vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~-------------------------- 156 (240)
++++|+++++++++. .++.||||||||||||++++|++....
T Consensus 80 vi~~DaLk~d~~~l~------------~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkEva~Rl~A~pgsk~Yg 147 (259)
T COG0030 80 VINGDALKFDFPSLA------------QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKEVAERLVAKPGSKDYG 147 (259)
T ss_pred EEeCchhcCcchhhc------------CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHHHHHHHHhCCCCCcccc
Confidence 999999999987653 358999999999999999999987532
Q ss_pred -------cccccchh----------------------------------------------------h----hh--HHHH
Q psy17126 157 -------NLLFPKHK----------------------------------------------------R----QL--VVSL 171 (240)
Q Consensus 157 -------~~~~~~~~----------------------------------------------------~----~~--~~~~ 171 (240)
|+|+++++ + .. ..+.
T Consensus 148 ~LsV~~q~~~~v~~~~~Vpp~~F~P~PkVdSavv~L~~~~~~~~~~~d~~~~~~~~~~~F~~RRKtl~n~l~~~~~~~~~ 227 (259)
T COG0030 148 RLSVLVQYYADVEIVFDVPPSAFYPPPKVDSAVVRLVPKKEKPSPVKDEEKFFKFVKAAFSQRRKTLRNNLKNLFGLEEV 227 (259)
T ss_pred hhhhhhhheEEEEEEEEEChhhCCCCCCccEEEEEEEeCCCCCCcccCHHHHHHHHHHHHhhhhHHHHHHHHhhhhHHHH
Confidence 55555444 0 11 2478
Q ss_pred HHHcCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17126 172 LERACVKPILRPYQLSVQEFGQICLAYRD 200 (240)
Q Consensus 172 l~~~gi~~~~R~e~ls~~~f~~L~~~l~~ 200 (240)
+..+|++++.|+|+||+++|++|++.+..
T Consensus 228 l~~~~i~~~~R~e~ls~~~f~~L~~~l~~ 256 (259)
T COG0030 228 LEAAGIDPNARAENLSPEDFLKLANALKG 256 (259)
T ss_pred HHhcCCCcccChhhCCHHHHHHHHHHHhh
Confidence 99999999999999999999999998865
No 3
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.97 E-value=2.5e-31 Score=235.14 Aligned_cols=129 Identities=32% Similarity=0.610 Sum_probs=116.3
Q ss_pred CCccHHHHHHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHH
Q psy17126 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPC 89 (240)
Q Consensus 10 ~~~~~~~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~ 89 (240)
++++++++++.++++++++|||||++|+.++++|++.+.+.++++|||||||+|.+|..+++++ .+|+|+|+|++|++.
T Consensus 1 ~~~~~~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~~~~~ 79 (272)
T PRK00274 1 SPPRTRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRDLAPI 79 (272)
T ss_pred CchhHHHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHHHHHH
Confidence 4678999999999999999999999999999999999999899999999999999999999985 599999999999999
Q ss_pred HHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhc
Q psy17126 90 LDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAI 154 (240)
Q Consensus 90 l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~ 154 (240)
++++... ++++++++|+.+++++++ .++.|||||||+|+++++++++...
T Consensus 80 ~~~~~~~--~~v~~i~~D~~~~~~~~~-------------~~~~vv~NlPY~iss~ii~~~l~~~ 129 (272)
T PRK00274 80 LAETFAE--DNLTIIEGDALKVDLSEL-------------QPLKVVANLPYNITTPLLFHLLEER 129 (272)
T ss_pred HHHhhcc--CceEEEEChhhcCCHHHc-------------CcceEEEeCCccchHHHHHHHHhcC
Confidence 9876532 689999999999876542 1478999999999999999999753
No 4
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.97 E-value=8.4e-31 Score=234.09 Aligned_cols=118 Identities=28% Similarity=0.426 Sum_probs=107.1
Q ss_pred HhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--
Q psy17126 20 LYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS-- 97 (240)
Q Consensus 20 ~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~-- 97 (240)
.+|++++|++|||||+|+.++++|++.+.+.++++|||||||+|.+|..+++.+ .+|+|+|+|++|++.+++++...
T Consensus 5 ~~~~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~ 83 (294)
T PTZ00338 5 KSGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPL 83 (294)
T ss_pred cCCcCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCC
Confidence 578999999999999999999999999999999999999999999999999984 79999999999999999876543
Q ss_pred CCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126 98 PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153 (240)
Q Consensus 98 ~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~ 153 (240)
.++++++++|+++.+++ .+|+||+||||+|++|+++++++.
T Consensus 84 ~~~v~ii~~Dal~~~~~---------------~~d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 84 ASKLEVIEGDALKTEFP---------------YFDVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred CCcEEEEECCHhhhccc---------------ccCEEEecCCcccCcHHHHHHHhc
Confidence 36899999999987643 358999999999999999999975
No 5
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=99.95 E-value=2.1e-28 Score=215.29 Aligned_cols=118 Identities=34% Similarity=0.640 Sum_probs=104.4
Q ss_pred chhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeE
Q psy17126 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVH 102 (240)
Q Consensus 23 ~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~ 102 (240)
.+++|+||||||+|+.++++|++.+++.+++.|||||||+|.+|..|++.+ .+|++||+|+.+++.+++... ..++++
T Consensus 2 ~k~kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-~~~~~~ 79 (262)
T PF00398_consen 2 HKPKKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-SNPNVE 79 (262)
T ss_dssp -SC-CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-TCSSEE
T ss_pred CCCCCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-hcccce
Confidence 367899999999999999999999999999999999999999999999996 899999999999999998654 348899
Q ss_pred EEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126 103 FHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ 152 (240)
Q Consensus 103 vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~ 152 (240)
++++|+++++...... .....|||||||+++++++.+++.
T Consensus 80 vi~~D~l~~~~~~~~~----------~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 80 VINGDFLKWDLYDLLK----------NQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp EEES-TTTSCGGGHCS----------SSEEEEEEEETGTGHHHHHHHHHH
T ss_pred eeecchhccccHHhhc----------CCceEEEEEecccchHHHHHHHhh
Confidence 9999999998765331 356899999999999999999998
No 6
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=210.22 Aligned_cols=114 Identities=32% Similarity=0.562 Sum_probs=102.6
Q ss_pred chhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeE
Q psy17126 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVH 102 (240)
Q Consensus 23 ~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~ 102 (240)
++++|+||||||+|+.++++|++.++..++++|||||||+|.+|..++++ +.+|+|||+|+.|++.++++... .++++
T Consensus 1 ~~~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~-~~~v~ 78 (258)
T PRK14896 1 IRMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA-AGNVE 78 (258)
T ss_pred CCCCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc-CCCEE
Confidence 36899999999999999999999999889999999999999999999998 47999999999999999987654 36899
Q ss_pred EEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126 103 FHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153 (240)
Q Consensus 103 vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~ 153 (240)
++++|+++++++ .+|.|||||||+++++++.+++..
T Consensus 79 ii~~D~~~~~~~---------------~~d~Vv~NlPy~i~s~~~~~l~~~ 114 (258)
T PRK14896 79 IIEGDALKVDLP---------------EFNKVVSNLPYQISSPITFKLLKH 114 (258)
T ss_pred EEEeccccCCch---------------hceEEEEcCCcccCcHHHHHHHhh
Confidence 999999987653 258999999999999999998864
No 7
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.95 E-value=1.7e-27 Score=208.42 Aligned_cols=116 Identities=34% Similarity=0.619 Sum_probs=102.6
Q ss_pred chhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeE
Q psy17126 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVH 102 (240)
Q Consensus 23 ~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~ 102 (240)
++++|+|||||++|+.++++|++.++..++++|||||||+|.+|..+++++ .+|+++|+|++|++.++++... .++++
T Consensus 1 ~~~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~-~~~v~ 78 (253)
T TIGR00755 1 FRPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL-YERLE 78 (253)
T ss_pred CCCCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc-CCcEE
Confidence 468999999999999999999999998899999999999999999999985 6899999999999999876643 47899
Q ss_pred EEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126 103 FHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ 152 (240)
Q Consensus 103 vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~ 152 (240)
++++|+.++++... ...+.||||+||+++++++.+++.
T Consensus 79 v~~~D~~~~~~~~~------------d~~~~vvsNlPy~i~~~il~~ll~ 116 (253)
T TIGR00755 79 VIEGDALKVDLPDF------------PKQLKVVSNLPYNISSPLIFKLLE 116 (253)
T ss_pred EEECchhcCChhHc------------CCcceEEEcCChhhHHHHHHHHhc
Confidence 99999999876531 112689999999999999999995
No 8
>KOG0820|consensus
Probab=99.95 E-value=1.1e-27 Score=207.74 Aligned_cols=161 Identities=24% Similarity=0.348 Sum_probs=140.7
Q ss_pred HHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC
Q psy17126 18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS 97 (240)
Q Consensus 18 ~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~ 97 (240)
..+-+.++++++|||++.++.+++.|++.+++++++.|||||||||.||..|++.+ ++|+|+|+|++|+..+.++.++.
T Consensus 25 ~~~~~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gt 103 (315)
T KOG0820|consen 25 PNSGGSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGT 103 (315)
T ss_pred ccccCcccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHHHHHHHHhcCC
Confidence 34567889999999999999999999999999999999999999999999999985 89999999999999999988776
Q ss_pred C--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccccccccchhh-hhHHHHHHH
Q psy17126 98 P--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKR-QLVVSLLER 174 (240)
Q Consensus 98 ~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~~~-~~~~~~l~~ 174 (240)
+ +++++++||+++.+++. +|.||+|+||+||||+++++|.+...+.|.+.+++ +++.++.++
T Consensus 104 p~~~kLqV~~gD~lK~d~P~---------------fd~cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~ 168 (315)
T KOG0820|consen 104 PKSGKLQVLHGDFLKTDLPR---------------FDGCVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRLVAR 168 (315)
T ss_pred CccceeeEEecccccCCCcc---------------cceeeccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhhccC
Confidence 6 78999999999988753 68999999999999999999999888999999998 999998777
Q ss_pred cCCCCCCCCCCCCHHHHHHHH
Q psy17126 175 ACVKPILRPYQLSVQEFGQIC 195 (240)
Q Consensus 175 ~gi~~~~R~e~ls~~~f~~L~ 195 (240)
.| ++-.++-++.++-|++..
T Consensus 169 pg-d~~Ycrlsin~q~~a~v~ 188 (315)
T KOG0820|consen 169 PG-DSLYCRLSINVQLLARVT 188 (315)
T ss_pred CC-CchhceeehhhHHhhcch
Confidence 77 555555555554444443
No 9
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.81 E-value=2.1e-19 Score=147.96 Aligned_cols=122 Identities=33% Similarity=0.532 Sum_probs=101.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchh
Q psy17126 40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE 119 (240)
Q Consensus 40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~ 119 (240)
+++|++.+++.++++|||||||+|.+|..++++ ..+|+|+|+|+.|++.++++... .++++++++|+.++++++
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~~~~---- 75 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFDLPK---- 75 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCCccc----
Confidence 577888899888999999999999999999998 57999999999999999987654 368999999999987543
Q ss_pred hhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccccccccchhh-hhHHHHHHHcC
Q psy17126 120 DRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKR-QLVVSLLERAC 176 (240)
Q Consensus 120 ~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~~~-~~~~~~l~~~g 176 (240)
..+|.|+||+||+++++++.++++......-.+-+++ ++++++.++.|
T Consensus 76 ---------~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~ 124 (169)
T smart00650 76 ---------LQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPG 124 (169)
T ss_pred ---------cCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCC
Confidence 2469999999999999999999986442222333445 88888887777
No 10
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.3e-14 Score=120.71 Aligned_cols=113 Identities=22% Similarity=0.275 Sum_probs=94.9
Q ss_pred hhhhccCccccCCHHHHHHHHHHcC---CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCC
Q psy17126 24 RALKQLSQNFLFEPRLTDKIVRNAG---TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP 100 (240)
Q Consensus 24 ~~~k~~gQ~fl~d~~i~~~iv~~~~---~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~ 100 (240)
.++..+-| |.++..++..|+..+. .-.|.+|+|+|||||.|+...+..++.+|+|||+|+++++.+++|+.+..++
T Consensus 16 ~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~ 94 (198)
T COG2263 16 NPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGD 94 (198)
T ss_pred CCCcccee-cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCc
Confidence 46667778 9999999999887663 3367899999999999999999988889999999999999999998877789
Q ss_pred eEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC-----CHHHHHHHHHh
Q psy17126 101 VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV-----STPLIIKWIQA 153 (240)
Q Consensus 101 v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I-----ss~il~~ll~~ 153 (240)
+.++.+|+.+++ .+++.||.||||.. ..|.+.+.++-
T Consensus 95 v~f~~~dv~~~~----------------~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 95 VEFVVADVSDFR----------------GKFDTVIMNPPFGSQRRHADRPFLLKALEI 136 (198)
T ss_pred eEEEEcchhhcC----------------CccceEEECCCCccccccCCHHHHHHHHHh
Confidence 999999998864 35689999999965 45566666654
No 11
>PHA03412 putative methyltransferase; Provisional
Probab=99.56 E-value=2e-14 Score=124.27 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=82.8
Q ss_pred HHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC----CCeEEEEeCCcchHHHHHHHH
Q psy17126 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR----PARLVLIEKDPRFTPCLDMLA 94 (240)
Q Consensus 19 ~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~----~~~V~avEid~~m~~~l~~~~ 94 (240)
+...+..++++|| |.+...++..++... ..+.+|||+|||+|.++..++++. ..+|+|||+|+.+++.++++.
T Consensus 20 ~~~~~~~~~~~Gq-FfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~ 96 (241)
T PHA03412 20 HEGAFTNNSELGA-FFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV 96 (241)
T ss_pred ccccccccccCCc-cCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc
Confidence 3445667888999 889999998886432 246799999999999999998752 358999999999999999764
Q ss_pred hcCCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126 95 QASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 95 ~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I 142 (240)
.++.++++|+...++. +++|.||+||||..
T Consensus 97 ----~~~~~~~~D~~~~~~~--------------~~FDlIIsNPPY~~ 126 (241)
T PHA03412 97 ----PEATWINADALTTEFD--------------TLFDMAISNPPFGK 126 (241)
T ss_pred ----cCCEEEEcchhccccc--------------CCccEEEECCCCCC
Confidence 3588999999865431 36899999999984
No 12
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=5.9e-13 Score=112.96 Aligned_cols=95 Identities=22% Similarity=0.270 Sum_probs=83.2
Q ss_pred cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcc
Q psy17126 29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGD 107 (240)
Q Consensus 29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D 107 (240)
.|| ++..|.++.+|++.+.++++++|||||||+|..|..|++.. .+|++||.++.+.+.++++++..+ .|+.++++|
T Consensus 51 ~gq-tis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD 128 (209)
T COG2518 51 CGQ-TISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGD 128 (209)
T ss_pred CCc-eecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC
Confidence 566 78899999999999999999999999999999999999984 699999999999999999988776 689999999
Q ss_pred cccccccccchhhhcccccCCCCceEEEecC
Q psy17126 108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138 (240)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNl 138 (240)
-.. +|.+..+||+|+-+-
T Consensus 129 G~~-------------G~~~~aPyD~I~Vta 146 (209)
T COG2518 129 GSK-------------GWPEEAPYDRIIVTA 146 (209)
T ss_pred ccc-------------CCCCCCCcCEEEEee
Confidence 865 455556788876553
No 13
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.44 E-value=2.3e-13 Score=118.49 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=80.3
Q ss_pred cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEE
Q psy17126 29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHL 105 (240)
Q Consensus 29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~ 105 (240)
=|-+|-+|.-++...+ ......+|||+|||+|.++..++++. ..+|+|||++++|++.|+++.+.. ..++++++
T Consensus 25 ~~~~~~~DaiLL~~~~---~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~ 101 (248)
T COG4123 25 CGFRYGTDAILLAAFA---PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIE 101 (248)
T ss_pred CccccccHHHHHHhhc---ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEeh
Confidence 3455667766655543 44457899999999999999999984 379999999999999999987653 38999999
Q ss_pred cccccccccccchhhhcccccCCCCceEEEecCCCCCCHH
Q psy17126 106 GDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP 145 (240)
Q Consensus 106 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~ 145 (240)
+|+.++.-...+ .++|.||+||||+-...
T Consensus 102 ~Di~~~~~~~~~-----------~~fD~Ii~NPPyf~~~~ 130 (248)
T COG4123 102 ADIKEFLKALVF-----------ASFDLIICNPPYFKQGS 130 (248)
T ss_pred hhHHHhhhcccc-----------cccCEEEeCCCCCCCcc
Confidence 999886432211 35899999999976543
No 14
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.44 E-value=6.7e-13 Score=109.53 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=74.5
Q ss_pred HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCC-eEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhh
Q psy17126 43 IVRNAGTITGNEVCEVGPGPGSITRSILNRRPA-RLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSED 120 (240)
Q Consensus 43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~-~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~ 120 (240)
+++.+...++.+|||+|||+|.++..++++.+. +|+++|+++.+++.+++++...+ .+++++++|+.+.- .
T Consensus 23 L~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-~------ 95 (170)
T PF05175_consen 23 LLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-P------ 95 (170)
T ss_dssp HHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-C------
T ss_pred HHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-c------
Confidence 334333336789999999999999999998653 79999999999999999887655 34999999987631 1
Q ss_pred hcccccCCCCceEEEecCCCCCCHH----HHHHHHHhccc
Q psy17126 121 RRRDWSEGLPGIRIIGNLPFNVSTP----LIIKWIQAISE 156 (240)
Q Consensus 121 ~~~~~~~~~~~~~VvsNlPY~Iss~----il~~ll~~~~~ 156 (240)
..++|.||+|||+..... .+.+++++...
T Consensus 96 -------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~ 128 (170)
T PF05175_consen 96 -------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARR 128 (170)
T ss_dssp -------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHH
T ss_pred -------ccceeEEEEccchhcccccchhhHHHHHHHHHH
Confidence 147899999999876655 56677766543
No 15
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.43 E-value=8.9e-13 Score=119.63 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=85.5
Q ss_pred cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcc
Q psy17126 29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGD 107 (240)
Q Consensus 29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D 107 (240)
|-..-..++.++..|+..+.+.++++|||+|||||.++..++.. ..+|+|+|+|+.|+..++.+++..+ .+++++++|
T Consensus 160 ~~~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D 238 (329)
T TIGR01177 160 FFKPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGD 238 (329)
T ss_pred ccCCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecc
Confidence 33345678899999999988899999999999999999988876 4799999999999999998876654 458999999
Q ss_pred cccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126 108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST 144 (240)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss 144 (240)
+.++++.. +.+|.|++|+||.+.+
T Consensus 239 ~~~l~~~~-------------~~~D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 239 ATKLPLSS-------------ESVDAIATDPPYGRST 262 (329)
T ss_pred hhcCCccc-------------CCCCEEEECCCCcCcc
Confidence 99876532 3689999999998754
No 16
>PRK14967 putative methyltransferase; Provisional
Probab=99.41 E-value=1.9e-12 Score=111.18 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126 36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN 115 (240)
Q Consensus 36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~ 115 (240)
+..++..++....+.++++|||+|||+|.++..++..+..+|+++|+|+.++..+++++...+.+++++++|+.+. +.+
T Consensus 21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~ 99 (223)
T PRK14967 21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEF 99 (223)
T ss_pred cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccC
Confidence 4556666666667778899999999999999999987545999999999999999988765445688999998653 111
Q ss_pred cchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126 116 MFSEDRRRDWSEGLPGIRIIGNLPFNVST 144 (240)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~VvsNlPY~Iss 144 (240)
.++|.|++|+||..++
T Consensus 100 -------------~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 100 -------------RPFDVVVSNPPYVPAP 115 (223)
T ss_pred -------------CCeeEEEECCCCCCCC
Confidence 3689999999997654
No 17
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.41 E-value=7.9e-13 Score=122.87 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=79.8
Q ss_pred hhccCccccCCHHH------HHHHHHHc--CCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc
Q psy17126 26 LKQLSQNFLFEPRL------TDKIVRNA--GTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA 96 (240)
Q Consensus 26 ~k~~gQ~fl~d~~i------~~~iv~~~--~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~ 96 (240)
+..||.+|.+++.+ .+.+++.+ .+.++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.++++++.
T Consensus 218 ~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~ 297 (423)
T PRK14966 218 REFYGRRFAVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD 297 (423)
T ss_pred eeecCcEEEeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 45577777776543 23444432 13456799999999999999998753 46999999999999999998876
Q ss_pred CCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126 97 SPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST 144 (240)
Q Consensus 97 ~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss 144 (240)
.+.+++++++|+.+..++. .+++|.||+||||..++
T Consensus 298 ~g~rV~fi~gDl~e~~l~~------------~~~FDLIVSNPPYI~~~ 333 (423)
T PRK14966 298 LGARVEFAHGSWFDTDMPS------------EGKWDIIVSNPPYIENG 333 (423)
T ss_pred cCCcEEEEEcchhcccccc------------CCCccEEEECCCCCCcc
Confidence 5568999999997643221 13689999999996554
No 18
>PHA03411 putative methyltransferase; Provisional
Probab=99.40 E-value=1.1e-12 Score=115.85 Aligned_cols=95 Identities=21% Similarity=0.279 Sum_probs=76.3
Q ss_pred cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcc
Q psy17126 29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGD 107 (240)
Q Consensus 29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D 107 (240)
.|| |.+++.++..++. ......+|||+|||+|.++..++.+. ..+|+++|+++.|++.++++. ++++++++|
T Consensus 45 ~G~-FfTP~~i~~~f~~--~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D 117 (279)
T PHA03411 45 SGA-FFTPEGLAWDFTI--DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----PEAEWITSD 117 (279)
T ss_pred cee-EcCCHHHHHHHHh--ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cCCEEEECc
Confidence 588 8899999876653 33456799999999999999998864 369999999999999998753 468999999
Q ss_pred cccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126 108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST 144 (240)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss 144 (240)
+.++... ..+|.||+|+||....
T Consensus 118 ~~e~~~~--------------~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 118 VFEFESN--------------EKFDVVISNPPFGKIN 140 (279)
T ss_pred hhhhccc--------------CCCcEEEEcCCccccC
Confidence 9875321 3589999999998643
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.40 E-value=4e-12 Score=96.51 Aligned_cols=75 Identities=21% Similarity=0.229 Sum_probs=60.7
Q ss_pred CCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhc--CCCCeEEEEcccccccccccchhhhcccccC
Q psy17126 51 TGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQA--SPCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~--~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~ 127 (240)
|+.+|||||||+|.++..+++. ...+|+|||+|+.|++.++++... ..++++++++|+ ......
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------------ 67 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------------ 67 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------------
Confidence 5789999999999999999993 357999999999999999998732 348999999999 322221
Q ss_pred CCCceEEEecC
Q psy17126 128 GLPGIRIIGNL 138 (240)
Q Consensus 128 ~~~~~~VvsNl 138 (240)
..++|.|+++.
T Consensus 68 ~~~~D~v~~~~ 78 (112)
T PF12847_consen 68 LEPFDLVICSG 78 (112)
T ss_dssp SSCEEEEEECS
T ss_pred CCCCCEEEECC
Confidence 13589998877
No 20
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.39 E-value=8.3e-13 Score=101.19 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=64.5
Q ss_pred CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCC
Q psy17126 52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~ 129 (240)
|.+|||+|||+|.++..+++.+..+++|+|+|+..++.++.+..... .+++++++|+.+.. ..+. .+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~~---------~~ 69 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPLP---------DG 69 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTCT---------TT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhcc---------Cc
Confidence 56899999999999999999865799999999999999999876543 67999999998764 1111 14
Q ss_pred CceEEEecCCCCCC
Q psy17126 130 PGIRIIGNLPFNVS 143 (240)
Q Consensus 130 ~~~~VvsNlPY~Is 143 (240)
++|.|++|+||...
T Consensus 70 ~~D~Iv~npP~~~~ 83 (117)
T PF13659_consen 70 KFDLIVTNPPYGPR 83 (117)
T ss_dssp -EEEEEE--STTSB
T ss_pred eeEEEEECCCCccc
Confidence 78999999999754
No 21
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=4.5e-12 Score=110.07 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=71.9
Q ss_pred ccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEE
Q psy17126 28 QLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHL 105 (240)
Q Consensus 28 ~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~ 105 (240)
|+|+ +..+-+.+++.+...+|.+|||||||||.+|..+++.. .++|+|+|+++.|++.++++....+ .++++++
T Consensus 32 S~g~----~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~ 107 (238)
T COG2226 32 SFGL----HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVV 107 (238)
T ss_pred cCcc----hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEE
Confidence 5666 46677778888787799999999999999999999974 3799999999999999999876543 4499999
Q ss_pred cccccccccc
Q psy17126 106 GDVMSFTMQN 115 (240)
Q Consensus 106 ~D~~~~~~~~ 115 (240)
+|++++++++
T Consensus 108 ~dAe~LPf~D 117 (238)
T COG2226 108 GDAENLPFPD 117 (238)
T ss_pred echhhCCCCC
Confidence 9999999876
No 22
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.37 E-value=9.6e-12 Score=106.27 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=79.3
Q ss_pred cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEE
Q psy17126 29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHL 105 (240)
Q Consensus 29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~ 105 (240)
.|| .+..|.+...+++.+.+.++++|||||||+|.+|..+++... ++|+++|++++|++.++++++..+ .++++++
T Consensus 55 ~g~-~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~ 133 (212)
T PRK13942 55 YGQ-TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV 133 (212)
T ss_pred CCC-EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE
Confidence 456 578899999999999999999999999999999999988632 699999999999999999877654 6799999
Q ss_pred cccccccccccchhhhcccccCCCCceEEEecC
Q psy17126 106 GDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138 (240)
Q Consensus 106 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNl 138 (240)
+|+...... ..+||+|+.+-
T Consensus 134 gd~~~~~~~-------------~~~fD~I~~~~ 153 (212)
T PRK13942 134 GDGTLGYEE-------------NAPYDRIYVTA 153 (212)
T ss_pred CCcccCCCc-------------CCCcCEEEECC
Confidence 998764221 14678887653
No 23
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.36 E-value=7.4e-12 Score=106.89 Aligned_cols=108 Identities=17% Similarity=0.084 Sum_probs=83.2
Q ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccc
Q psy17126 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVM 109 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~ 109 (240)
.+..+.++..+++.+.+.++++|||||||+|.+|..+++... ++|+++|+++.+++.+++++...+ ++++++++|+.
T Consensus 59 ~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~ 138 (215)
T TIGR00080 59 TISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGT 138 (215)
T ss_pred EechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcc
Confidence 567788999999999999999999999999999999998742 469999999999999999877654 68999999997
Q ss_pred cccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126 110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153 (240)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~ 153 (240)
+.... ..+||.|+.+.+..--.+.+.+.|..
T Consensus 139 ~~~~~-------------~~~fD~Ii~~~~~~~~~~~~~~~L~~ 169 (215)
T TIGR00080 139 QGWEP-------------LAPYDRIYVTAAGPKIPEALIDQLKE 169 (215)
T ss_pred cCCcc-------------cCCCCEEEEcCCcccccHHHHHhcCc
Confidence 63211 13688888776532222334444443
No 24
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.34 E-value=3.7e-12 Score=110.53 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=60.1
Q ss_pred ccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEE
Q psy17126 28 QLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFH 104 (240)
Q Consensus 28 ~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi 104 (240)
++|+ +..+.+++++.+...++.+|||+|||||.+|..++++. .++|+|+|+++.|++.++++....+ .+++++
T Consensus 28 s~g~----~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v 103 (233)
T PF01209_consen 28 SFGQ----DRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFV 103 (233)
T ss_dssp -------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEE
T ss_pred CCcH----HHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEE
Confidence 4565 45566677777788889999999999999999999873 2699999999999999998876543 589999
Q ss_pred EcccccccccccchhhhcccccCCCCceEEEec
Q psy17126 105 LGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN 137 (240)
Q Consensus 105 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsN 137 (240)
++|++++++++ +.+|.|++.
T Consensus 104 ~~da~~lp~~d-------------~sfD~v~~~ 123 (233)
T PF01209_consen 104 QGDAEDLPFPD-------------NSFDAVTCS 123 (233)
T ss_dssp E-BTTB--S-T-------------T-EEEEEEE
T ss_pred EcCHHHhcCCC-------------CceeEEEHH
Confidence 99999998765 357877754
No 25
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=6.4e-12 Score=111.85 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=62.3
Q ss_pred EEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCCCCc
Q psy17126 54 EVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131 (240)
Q Consensus 54 ~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~ 131 (240)
+|||||||||.++..++...+ .+|+|+|+|++.++.+++|+...+ .++.++++|+.+ .+ .+++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~----~~-----------~~~f 177 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE----PL-----------RGKF 177 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc----cc-----------CCce
Confidence 799999999999999999864 599999999999999999987765 667777777644 11 1368
Q ss_pred eEEEecCCCCCCH
Q psy17126 132 IRIIGNLPFNVST 144 (240)
Q Consensus 132 ~~VvsNlPY~Iss 144 (240)
|.||+||||=-.+
T Consensus 178 DlIVsNPPYip~~ 190 (280)
T COG2890 178 DLIVSNPPYIPAE 190 (280)
T ss_pred eEEEeCCCCCCCc
Confidence 9999999994443
No 26
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.33 E-value=3.5e-12 Score=111.00 Aligned_cols=106 Identities=18% Similarity=0.184 Sum_probs=83.9
Q ss_pred HHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC
Q psy17126 18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS 97 (240)
Q Consensus 18 ~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~ 97 (240)
+++..-++.+.|.++-.+...+++.+++.+...++.+|||+|||+|.++..++..+ .+|+++|+++.|++.++++.
T Consensus 9 i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~--- 84 (251)
T PRK10258 9 IAAAFGRAAAHYEQHAELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKD--- 84 (251)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhC---
Confidence 33333356677888777778888889988877677899999999999999998874 79999999999999988653
Q ss_pred CCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126 98 PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN 141 (240)
Q Consensus 98 ~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~ 141 (240)
....++++|+..+++.+ +.+|.|++|.++.
T Consensus 85 -~~~~~~~~d~~~~~~~~-------------~~fD~V~s~~~l~ 114 (251)
T PRK10258 85 -AADHYLAGDIESLPLAT-------------ATFDLAWSNLAVQ 114 (251)
T ss_pred -CCCCEEEcCcccCcCCC-------------CcEEEEEECchhh
Confidence 23568899998876533 3689999998754
No 27
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.33 E-value=2.1e-11 Score=103.56 Aligned_cols=110 Identities=13% Similarity=0.069 Sum_probs=83.1
Q ss_pred cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEE
Q psy17126 29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFH 104 (240)
Q Consensus 29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi 104 (240)
.|+ .+..+.+...+++.+.+.++++|||||||+|.+|..+++.. .++|+++|+++.|++.+++++...+ ++++++
T Consensus 51 ~~~-~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~ 129 (205)
T PRK13944 51 AGA-TISAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVY 129 (205)
T ss_pred CCC-EechHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 344 45567888999999998899999999999999999998763 2699999999999999998876544 469999
Q ss_pred EcccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126 105 LGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ 152 (240)
Q Consensus 105 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~ 152 (240)
++|+.+... . ..++|.|+++....--.+.+.+.|.
T Consensus 130 ~~d~~~~~~-~------------~~~fD~Ii~~~~~~~~~~~l~~~L~ 164 (205)
T PRK13944 130 HGDGKRGLE-K------------HAPFDAIIVTAAASTIPSALVRQLK 164 (205)
T ss_pred ECCcccCCc-c------------CCCccEEEEccCcchhhHHHHHhcC
Confidence 999976321 1 1368999988764332333444444
No 28
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.32 E-value=9.7e-12 Score=103.05 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=67.5
Q ss_pred HHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcc
Q psy17126 44 VRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRR 123 (240)
Q Consensus 44 v~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~ 123 (240)
.+.+...++++|||+|||+|.++..++..+. +|+++|+++.|++.++++....+.+++++++|+.+...
T Consensus 12 ~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---------- 80 (179)
T TIGR00537 12 EANLRELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVR---------- 80 (179)
T ss_pred HHHHHhcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccC----------
Confidence 3334445668999999999999999999864 99999999999999999876555578899999866321
Q ss_pred cccCCCCceEEEecCCCCCC
Q psy17126 124 DWSEGLPGIRIIGNLPFNVS 143 (240)
Q Consensus 124 ~~~~~~~~~~VvsNlPY~Is 143 (240)
+++|.|++|+||...
T Consensus 81 -----~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 81 -----GKFDVILFNPPYLPL 95 (179)
T ss_pred -----CcccEEEECCCCCCC
Confidence 358999999999643
No 29
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.31 E-value=1.9e-11 Score=112.99 Aligned_cols=101 Identities=15% Similarity=0.287 Sum_probs=76.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC----CCeEEEEccccccccc
Q psy17126 40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP----CPVHFHLGDVMSFTMQ 114 (240)
Q Consensus 40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~----~~v~vi~~D~~~~~~~ 114 (240)
.+.+++.++...+.+|||+|||+|.++..++++.+ .+|+++|+|+.+++.++++.+... .+++++.+|+.+. ++
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence 34466777655567999999999999999998753 699999999999999998875432 3688898888642 11
Q ss_pred ccchhhhcccccCCCCceEEEecCCCCC----CHHHHHHHHHhc
Q psy17126 115 NMFSEDRRRDWSEGLPGIRIIGNLPFNV----STPLIIKWIQAI 154 (240)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~VvsNlPY~I----ss~il~~ll~~~ 154 (240)
+.++|.|++||||+. +..+..+++.+.
T Consensus 296 -------------~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a 326 (378)
T PRK15001 296 -------------PFRFNAVLCNPPFHQQHALTDNVAWEMFHHA 326 (378)
T ss_pred -------------CCCEEEEEECcCcccCccCCHHHHHHHHHHH
Confidence 136899999999963 345555665543
No 30
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.31 E-value=2.2e-11 Score=103.39 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=70.6
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccccc
Q psy17126 39 LTDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNM 116 (240)
Q Consensus 39 i~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~ 116 (240)
+.+.++..+. ..++.+|||+|||+|.++..++.+++.+|++||+++.+++.++++++..+ .+++++++|+.+. +...
T Consensus 40 v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~-l~~~ 118 (199)
T PRK10909 40 VRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF-LAQP 118 (199)
T ss_pred HHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH-Hhhc
Confidence 4444555543 24678999999999999997666666899999999999999999876554 5799999998653 1110
Q ss_pred chhhhcccccCCCCceEEEecCCCCCC
Q psy17126 117 FSEDRRRDWSEGLPGIRIIGNLPFNVS 143 (240)
Q Consensus 117 ~~~~~~~~~~~~~~~~~VvsNlPY~Is 143 (240)
..++|+||.||||.-.
T Consensus 119 -----------~~~fDlV~~DPPy~~g 134 (199)
T PRK10909 119 -----------GTPHNVVFVDPPFRKG 134 (199)
T ss_pred -----------CCCceEEEECCCCCCC
Confidence 1358999999998643
No 31
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.30 E-value=1.9e-11 Score=115.14 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccc
Q psy17126 39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMF 117 (240)
Q Consensus 39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~ 117 (240)
+++.+++.+...++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.+++++...+ .+++++++|+.+.- ...
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l-~~~- 361 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF-TDQ- 361 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh-hhh-
Confidence 45556666677788999999999999999999885 799999999999999999876544 57999999997631 111
Q ss_pred hhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126 118 SEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~ 153 (240)
.|. ..++|.|+.||||.-....+ +.+..
T Consensus 362 ------~~~-~~~fD~Vi~dPPr~g~~~~~-~~l~~ 389 (443)
T PRK13168 362 ------PWA-LGGFDKVLLDPPRAGAAEVM-QALAK 389 (443)
T ss_pred ------hhh-cCCCCEEEECcCCcChHHHH-HHHHh
Confidence 011 13589999999997655555 44443
No 32
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.29 E-value=2.7e-11 Score=106.32 Aligned_cols=103 Identities=19% Similarity=0.220 Sum_probs=77.6
Q ss_pred hccCccccCCH----------HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHh
Q psy17126 27 KQLSQNFLFEP----------RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQ 95 (240)
Q Consensus 27 k~~gQ~fl~d~----------~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~ 95 (240)
..+|.+|.+++ .+++.++......++.+|||+|||+|.++..++... ..+|+|+|+++.+++.++++..
T Consensus 74 ~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 74 EFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred eEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 34566665553 345555544555677899999999999999999875 3799999999999999999876
Q ss_pred -cCCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126 96 -ASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143 (240)
Q Consensus 96 -~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is 143 (240)
....+++++++|+.+.. . .+++|.||+|+||.-+
T Consensus 154 ~~~~~~i~~~~~d~~~~~-~-------------~~~fD~Iv~npPy~~~ 188 (275)
T PRK09328 154 HGLGARVEFLQGDWFEPL-P-------------GGRFDLIVSNPPYIPE 188 (275)
T ss_pred hCCCCcEEEEEccccCcC-C-------------CCceeEEEECCCcCCc
Confidence 33368999999985421 1 1368999999999543
No 33
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.29 E-value=9.4e-12 Score=106.36 Aligned_cols=98 Identities=22% Similarity=0.290 Sum_probs=74.8
Q ss_pred cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEE
Q psy17126 29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHL 105 (240)
Q Consensus 29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~ 105 (240)
.|| .+..|.+..+|++.+.++++++|||||||||.+|..|+.... ++|++||+++.+++.+++++...+ .|+++++
T Consensus 51 ~~~-~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 51 CGQ-TISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp TTE-EE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred cee-echHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 345 678899999999999999999999999999999999998632 479999999999999999887654 6899999
Q ss_pred cccccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126 106 GDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 106 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY 140 (240)
+|...- |....+||.|+.+--.
T Consensus 130 gdg~~g-------------~~~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 130 GDGSEG-------------WPEEAPFDRIIVTAAV 151 (209)
T ss_dssp S-GGGT-------------TGGG-SEEEEEESSBB
T ss_pred cchhhc-------------cccCCCcCEEEEeecc
Confidence 998652 2222578998887543
No 34
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.28 E-value=2.4e-11 Score=108.17 Aligned_cols=104 Identities=15% Similarity=0.220 Sum_probs=75.1
Q ss_pred hccCccccCCHH----------HHHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHH
Q psy17126 27 KQLSQNFLFEPR----------LTDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLA 94 (240)
Q Consensus 27 k~~gQ~fl~d~~----------i~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~ 94 (240)
..+|..|.+++. ++..+++.+. ..+..+|||+|||+|.++..++...+ .+|+|+|+++.+++.+++++
T Consensus 79 ~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 79 EFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA 158 (284)
T ss_pred eEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 335666655543 3344443332 22336899999999999999998753 69999999999999999987
Q ss_pred hcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126 95 QASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST 144 (240)
Q Consensus 95 ~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss 144 (240)
...+ ++++++++|+.+. ++. .++|.||+||||--++
T Consensus 159 ~~~~~~~~v~~~~~d~~~~-~~~-------------~~fDlIvsNPPyi~~~ 196 (284)
T TIGR00536 159 EKNQLEHRVEFIQSNLFEP-LAG-------------QKIDIIVSNPPYIDEE 196 (284)
T ss_pred HHcCCCCcEEEEECchhcc-CcC-------------CCccEEEECCCCCCcc
Confidence 6544 4599999998752 211 2589999999995443
No 35
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.28 E-value=2.6e-11 Score=106.88 Aligned_cols=104 Identities=12% Similarity=0.084 Sum_probs=84.9
Q ss_pred hCchhhhccCccccCCHH--HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC
Q psy17126 21 YKLRALKQLSQNFLFEPR--LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP 98 (240)
Q Consensus 21 ~~~~~~k~~gQ~fl~d~~--i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~ 98 (240)
...+.-+-||.+|+.... ....+++.+.+.++.+|||||||+|.++..++.....+|+|+|+++.|++.++++... .
T Consensus 20 ~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~ 98 (263)
T PTZ00098 20 GIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-K 98 (263)
T ss_pred cchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-C
Confidence 344566779999998864 4788999999999999999999999999999876446999999999999999986543 3
Q ss_pred CCeEEEEcccccccccccchhhhcccccCCCCceEEEecC
Q psy17126 99 CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138 (240)
Q Consensus 99 ~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNl 138 (240)
++++++++|+.+.++++ +++|+|+++-
T Consensus 99 ~~i~~~~~D~~~~~~~~-------------~~FD~V~s~~ 125 (263)
T PTZ00098 99 NKIEFEANDILKKDFPE-------------NTFDMIYSRD 125 (263)
T ss_pred CceEEEECCcccCCCCC-------------CCeEEEEEhh
Confidence 67999999998766543 3689999854
No 36
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.28 E-value=2.5e-11 Score=108.19 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=65.6
Q ss_pred CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhccccc
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWS 126 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~ 126 (240)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.+++++...+ ++++++++|+.+. ++.
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~----------- 187 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPG----------- 187 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCC-----------
Confidence 345799999999999999999874 3699999999999999999876543 5799999998642 111
Q ss_pred CCCCceEEEecCCCCCCH
Q psy17126 127 EGLPGIRIIGNLPFNVST 144 (240)
Q Consensus 127 ~~~~~~~VvsNlPY~Iss 144 (240)
.++|.||+||||.-..
T Consensus 188 --~~fD~Iv~NPPy~~~~ 203 (284)
T TIGR03533 188 --RKYDLIVSNPPYVDAE 203 (284)
T ss_pred --CCccEEEECCCCCCcc
Confidence 3589999999995443
No 37
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=1.9e-11 Score=108.29 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=76.1
Q ss_pred chhhhccCccccCCHH---------HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHH
Q psy17126 23 LRALKQLSQNFLFEPR---------LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDML 93 (240)
Q Consensus 23 ~~~~k~~gQ~fl~d~~---------i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~ 93 (240)
+.+.+.|.-.|..++. -++.+++.+.+.+|++|||||||+|.+++.+|++...+|+||++|+++...++++
T Consensus 35 Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r 114 (283)
T COG2230 35 LDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKR 114 (283)
T ss_pred cCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHH
Confidence 4466677777777664 3577888999999999999999999999999998667999999999999999997
Q ss_pred HhcCC--CCeEEEEccccccc
Q psy17126 94 AQASP--CPVHFHLGDVMSFT 112 (240)
Q Consensus 94 ~~~~~--~~v~vi~~D~~~~~ 112 (240)
+...+ .+++++..|..+++
T Consensus 115 ~~~~gl~~~v~v~l~d~rd~~ 135 (283)
T COG2230 115 IAARGLEDNVEVRLQDYRDFE 135 (283)
T ss_pred HHHcCCCcccEEEeccccccc
Confidence 65544 68999999998865
No 38
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.28 E-value=2e-11 Score=91.83 Aligned_cols=87 Identities=16% Similarity=0.231 Sum_probs=67.3
Q ss_pred EEEECCchhHHHHHHHhhC----CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126 55 VCEVGPGPGSITRSILNRR----PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130 (240)
Q Consensus 55 VLEIG~GtG~lt~~La~~~----~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~ 130 (240)
|||+|||+|..+..++... ..+++|+|+|+.|++.++++....+.+++++++|+.+++..+ ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~-------------~~ 67 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSD-------------GK 67 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHS-------------SS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccC-------------CC
Confidence 7999999999999999874 279999999999999999876554468999999998865322 46
Q ss_pred ceEEEe-cC-CCCCCHHHHHHHHHhc
Q psy17126 131 GIRIIG-NL-PFNVSTPLIIKWIQAI 154 (240)
Q Consensus 131 ~~~Vvs-Nl-PY~Iss~il~~ll~~~ 154 (240)
+|.|++ +. ..+++.+.+.+++++.
T Consensus 68 ~D~v~~~~~~~~~~~~~~~~~ll~~~ 93 (101)
T PF13649_consen 68 FDLVVCSGLSLHHLSPEELEALLRRI 93 (101)
T ss_dssp EEEEEE-TTGGGGSSHHHHHHHHHHH
T ss_pred eeEEEEcCCccCCCCHHHHHHHHHHH
Confidence 898888 44 3448888888887764
No 39
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.27 E-value=2.1e-11 Score=99.69 Aligned_cols=113 Identities=27% Similarity=0.380 Sum_probs=90.2
Q ss_pred hccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEE
Q psy17126 27 KQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFH 104 (240)
Q Consensus 27 k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi 104 (240)
+.-|---..++.++++|++.+++..|.-|||+|+|||.+|..+++++ ...++++|.|++++..+.+.. +.++++
T Consensus 24 rtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~----p~~~ii 99 (194)
T COG3963 24 RTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY----PGVNII 99 (194)
T ss_pred ceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----CCcccc
Confidence 33566666777899999999999999999999999999999999986 378999999999999998643 457899
Q ss_pred Eccccccc--ccccchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHh
Q psy17126 105 LGDVMSFT--MQNMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQA 153 (240)
Q Consensus 105 ~~D~~~~~--~~~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~ 153 (240)
+||+..++ +.+. .+..+|.|||.+| -+++...-..++++
T Consensus 100 ~gda~~l~~~l~e~----------~gq~~D~viS~lPll~~P~~~~iaile~ 141 (194)
T COG3963 100 NGDAFDLRTTLGEH----------KGQFFDSVISGLPLLNFPMHRRIAILES 141 (194)
T ss_pred ccchhhHHHHHhhc----------CCCeeeeEEeccccccCcHHHHHHHHHH
Confidence 99998865 3221 1246899999999 46776666666654
No 40
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.27 E-value=4.8e-11 Score=100.78 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=73.5
Q ss_pred HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhh
Q psy17126 43 IVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDR 121 (240)
Q Consensus 43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~ 121 (240)
+++.+...++.+|||+|||+|.++..|++++ .+|+|+|+|+.|++.++++....+ .+++++.+|+.+++++
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~------- 93 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD------- 93 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-------
Confidence 4444556677899999999999999999985 699999999999999988765433 5688899998776542
Q ss_pred cccccCCCCceEEEecCCC-CCCHHHHHHHHHhc
Q psy17126 122 RRDWSEGLPGIRIIGNLPF-NVSTPLIIKWIQAI 154 (240)
Q Consensus 122 ~~~~~~~~~~~~VvsNlPY-~Iss~il~~ll~~~ 154 (240)
+++|.|+++..+ +++...+..++...
T Consensus 94 -------~~fD~I~~~~~~~~~~~~~~~~~l~~i 120 (197)
T PRK11207 94 -------GEYDFILSTVVLMFLEAKTIPGLIANM 120 (197)
T ss_pred -------CCcCEEEEecchhhCCHHHHHHHHHHH
Confidence 258999998774 44544455555543
No 41
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.27 E-value=2e-11 Score=110.17 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=81.7
Q ss_pred cCCHHHHHHHH----HHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccc
Q psy17126 34 LFEPRLTDKIV----RNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDV 108 (240)
Q Consensus 34 l~d~~i~~~iv----~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~ 108 (240)
-+++.+...+. +++...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.++++++..+ .+++++++|+
T Consensus 152 Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~ 230 (315)
T PRK03522 152 QTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS 230 (315)
T ss_pred ecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH
Confidence 44555555554 34443456899999999999999999975 799999999999999999876544 5799999999
Q ss_pred ccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhc
Q psy17126 109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAI 154 (240)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~ 154 (240)
.++.... .+.+|.||.|||+.-..+.+.+++...
T Consensus 231 ~~~~~~~------------~~~~D~Vv~dPPr~G~~~~~~~~l~~~ 264 (315)
T PRK03522 231 TQFATAQ------------GEVPDLVLVNPPRRGIGKELCDYLSQM 264 (315)
T ss_pred HHHHHhc------------CCCCeEEEECCCCCCccHHHHHHHHHc
Confidence 7753210 135799999999876556666666654
No 42
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.26 E-value=4.5e-11 Score=103.28 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccccc
Q psy17126 39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNM 116 (240)
Q Consensus 39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~ 116 (240)
++..+++.+. ..+.+|||+|||+|.++..++... ..+|+|+|+++.+++.++++....+ .+++++++|+.+. ++.
T Consensus 76 l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~~~- 152 (251)
T TIGR03534 76 LVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP-LPG- 152 (251)
T ss_pred HHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc-CcC-
Confidence 4555666554 345689999999999999999874 3599999999999999998876544 4699999999762 211
Q ss_pred chhhhcccccCCCCceEEEecCCCCCCH
Q psy17126 117 FSEDRRRDWSEGLPGIRIIGNLPFNVST 144 (240)
Q Consensus 117 ~~~~~~~~~~~~~~~~~VvsNlPY~Iss 144 (240)
+++|.|++|+||.-.+
T Consensus 153 ------------~~fD~Vi~npPy~~~~ 168 (251)
T TIGR03534 153 ------------GKFDLIVSNPPYIPEA 168 (251)
T ss_pred ------------CceeEEEECCCCCchh
Confidence 3689999999996443
No 43
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.26 E-value=3.8e-11 Score=100.09 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccc
Q psy17126 34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSF 111 (240)
Q Consensus 34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~ 111 (240)
++-+.+..-.++.+.++++++++|||||||++|..++..+ .++|+|||.++++++..++|+++++ +|++++.||+.+.
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 6778888889999999999999999999999999999544 3799999999999999999998887 8999999999875
No 44
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.26 E-value=5.7e-11 Score=101.82 Aligned_cols=92 Identities=7% Similarity=0.084 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc
Q psy17126 36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT 112 (240)
Q Consensus 36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~ 112 (240)
+....+.+++.+.+.++.+|||+|||+|.++..+++.. ..+|+|+|+++.|++.++++..... ++++++++|+.+++
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP 109 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC
Confidence 55666788888888889999999999999999999863 2699999999999999998765433 67999999998876
Q ss_pred ccccchhhhcccccCCCCceEEEecCCC
Q psy17126 113 MQNMFSEDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY 140 (240)
+++ +++|.|+++..+
T Consensus 110 ~~~-------------~~fD~V~~~~~l 124 (231)
T TIGR02752 110 FDD-------------NSFDYVTIGFGL 124 (231)
T ss_pred CCC-------------CCccEEEEeccc
Confidence 432 367888887654
No 45
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.25 E-value=3.5e-11 Score=96.97 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=65.9
Q ss_pred CCCCEEEEECCchhHHHHHHHhh-C-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhccccc
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNR-R-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWS 126 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~-~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~ 126 (240)
+.+.+|||+|||+|.++..+++. + ..+++|||+++.|++.++++++..+ ++++++++|+.+++-. +.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~--~~-------- 71 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE--LE-------- 71 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC--SS--------
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc--cC--------
Confidence 46789999999999999999953 2 4799999999999999999776554 5899999999986511 10
Q ss_pred CCCCceEEEecCCC-CCCHH
Q psy17126 127 EGLPGIRIIGNLPF-NVSTP 145 (240)
Q Consensus 127 ~~~~~~~VvsNlPY-~Iss~ 145 (240)
..+|+|+++.++ ++..+
T Consensus 72 --~~~D~I~~~~~l~~~~~~ 89 (152)
T PF13847_consen 72 --EKFDIIISNGVLHHFPDP 89 (152)
T ss_dssp --TTEEEEEEESTGGGTSHH
T ss_pred --CCeeEEEEcCchhhccCH
Confidence 258999999874 45544
No 46
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.25 E-value=5.7e-11 Score=104.11 Aligned_cols=93 Identities=16% Similarity=0.136 Sum_probs=67.5
Q ss_pred HHHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc
Q psy17126 39 LTDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM 116 (240)
Q Consensus 39 i~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~ 116 (240)
+++.++..+.. ....+|||+|||+|.++..++... ..+|+|+|+|+.+++.+++++... +++++++|+.+.- ...
T Consensus 73 Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~--~~~~~~~D~~~~l-~~~ 149 (251)
T TIGR03704 73 LVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA--GGTVHEGDLYDAL-PTA 149 (251)
T ss_pred HHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CCEEEEeechhhc-chh
Confidence 34444444332 234589999999999999998764 258999999999999999987653 3688999986531 111
Q ss_pred chhhhcccccCCCCceEEEecCCCCCCH
Q psy17126 117 FSEDRRRDWSEGLPGIRIIGNLPFNVST 144 (240)
Q Consensus 117 ~~~~~~~~~~~~~~~~~VvsNlPY~Iss 144 (240)
. .+++|.||+||||..++
T Consensus 150 ~----------~~~fDlVv~NPPy~~~~ 167 (251)
T TIGR03704 150 L----------RGRVDILAANAPYVPTD 167 (251)
T ss_pred c----------CCCEeEEEECCCCCCch
Confidence 1 13589999999996543
No 47
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.25 E-value=2.6e-11 Score=116.13 Aligned_cols=80 Identities=15% Similarity=0.100 Sum_probs=64.7
Q ss_pred CCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCC
Q psy17126 52 GNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~ 128 (240)
+.+|||+|||+|.++..++... ..+|+|+|+|+.+++.+++++...+ ++++++++|+.+. +. .
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~-------------~ 204 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IE-------------K 204 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-Cc-------------C
Confidence 4689999999999999998764 3699999999999999999876543 5799999998642 11 1
Q ss_pred CCceEEEecCCCCCCHH
Q psy17126 129 LPGIRIIGNLPFNVSTP 145 (240)
Q Consensus 129 ~~~~~VvsNlPY~Iss~ 145 (240)
.++|.||+||||-.++.
T Consensus 205 ~~fDlIvsNPPYi~~~~ 221 (506)
T PRK01544 205 QKFDFIVSNPPYISHSE 221 (506)
T ss_pred CCccEEEECCCCCCchh
Confidence 36899999999976543
No 48
>KOG3420|consensus
Probab=99.24 E-value=9.7e-12 Score=99.62 Aligned_cols=105 Identities=14% Similarity=0.217 Sum_probs=87.0
Q ss_pred hhhhccCccccCCHHHHHHHHHHcC----CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCC
Q psy17126 24 RALKQLSQNFLFEPRLTDKIVRNAG----TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC 99 (240)
Q Consensus 24 ~~~k~~gQ~fl~d~~i~~~iv~~~~----~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~ 99 (240)
+++-.+.| |.+.|.++..|+..+. --+|..++|+|||+|.|+...+--....|+|+|+|++.++.+.+|++++.-
T Consensus 18 Kpk~~LEQ-Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv 96 (185)
T KOG3420|consen 18 KPKLLLEQ-YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV 96 (185)
T ss_pred ccchhhhh-CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh
Confidence 45666777 9999999999988763 236899999999999999777665557999999999999999999887776
Q ss_pred CeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126 100 PVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 100 ~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I 142 (240)
++.++++|+++..+.. +.+|.+|-|+||..
T Consensus 97 qidlLqcdildle~~~-------------g~fDtaviNppFGT 126 (185)
T KOG3420|consen 97 QIDLLQCDILDLELKG-------------GIFDTAVINPPFGT 126 (185)
T ss_pred hhheeeeeccchhccC-------------CeEeeEEecCCCCc
Confidence 7889999998865432 46899999999964
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.24 E-value=5.8e-11 Score=99.22 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=61.3
Q ss_pred CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCC
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~ 128 (240)
++.+|||||||+|.++..++... ..+|+|||+|+.|++.++++.+..+ ++++++++|+.++...
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~-------------- 107 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHE-------------- 107 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcccc--------------
Confidence 47899999999999999998764 3689999999999999988766554 5799999999875311
Q ss_pred CCceEEEecC
Q psy17126 129 LPGIRIIGNL 138 (240)
Q Consensus 129 ~~~~~VvsNl 138 (240)
+++|.|++|.
T Consensus 108 ~~fD~I~s~~ 117 (181)
T TIGR00138 108 EQFDVITSRA 117 (181)
T ss_pred CCccEEEehh
Confidence 3689999986
No 50
>PLN02244 tocopherol O-methyltransferase
Probab=99.23 E-value=6.2e-11 Score=108.17 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCC-----CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126 38 RLTDKIVRNAGT-----ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS 110 (240)
Q Consensus 38 ~i~~~iv~~~~~-----~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~ 110 (240)
.+++.+++.+++ .++++|||||||+|.++..++++...+|+|||+++.|++.++++....+ ++++++++|+.+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 467778888877 6789999999999999999998754699999999999999988765433 579999999998
Q ss_pred ccccccchhhhcccccCCCCceEEEecCC
Q psy17126 111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlP 139 (240)
+++++ +.+|+|+++.-
T Consensus 180 ~~~~~-------------~~FD~V~s~~~ 195 (340)
T PLN02244 180 QPFED-------------GQFDLVWSMES 195 (340)
T ss_pred CCCCC-------------CCccEEEECCc
Confidence 76543 46888888654
No 51
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.23 E-value=8.1e-11 Score=99.21 Aligned_cols=97 Identities=10% Similarity=0.077 Sum_probs=70.8
Q ss_pred HHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhh
Q psy17126 42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR 121 (240)
Q Consensus 42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~ 121 (240)
.+++.+...++.+|||+|||+|.++..+++++ .+|+|+|+|+.|++.+++++...+-++++..+|+...+++
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~------- 92 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN------- 92 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-------
Confidence 45555566567899999999999999999985 6999999999999999887654333467777777654332
Q ss_pred cccccCCCCceEEEecCCCC-CCHHHHHHHHHh
Q psy17126 122 RRDWSEGLPGIRIIGNLPFN-VSTPLIIKWIQA 153 (240)
Q Consensus 122 ~~~~~~~~~~~~VvsNlPY~-Iss~il~~ll~~ 153 (240)
+++|.|+++.+++ ++.+.+..++..
T Consensus 93 -------~~fD~I~~~~~~~~~~~~~~~~~l~~ 118 (195)
T TIGR00477 93 -------EDYDFIFSTVVFMFLQAGRVPEIIAN 118 (195)
T ss_pred -------CCCCEEEEecccccCCHHHHHHHHHH
Confidence 2579999998875 333344444443
No 52
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.23 E-value=1.4e-10 Score=98.62 Aligned_cols=93 Identities=16% Similarity=0.120 Sum_probs=76.4
Q ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccc
Q psy17126 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSF 111 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~ 111 (240)
++..+.+...+++.+.+.++.+|||||||+|.+|..++... .+|+++|+++.+++.+++++...+ .+++++++|+.+.
T Consensus 60 ~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 138 (212)
T PRK00312 60 TISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG 138 (212)
T ss_pred eeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC
Confidence 56788999999999999899999999999999999888874 699999999999999998876554 5699999998652
Q ss_pred cccccchhhhcccccCCCCceEEEecCC
Q psy17126 112 TMQNMFSEDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlP 139 (240)
+.. .+++|.|+.+.+
T Consensus 139 -~~~------------~~~fD~I~~~~~ 153 (212)
T PRK00312 139 -WPA------------YAPFDRILVTAA 153 (212)
T ss_pred -CCc------------CCCcCEEEEccC
Confidence 111 136788887754
No 53
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.22 E-value=1.1e-10 Score=102.87 Aligned_cols=91 Identities=10% Similarity=0.084 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-C-CeEEEEeCCcchHHHHHHHHh----cCCCCeEEEEcccc
Q psy17126 36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-P-ARLVLIEKDPRFTPCLDMLAQ----ASPCPVHFHLGDVM 109 (240)
Q Consensus 36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~-~~V~avEid~~m~~~l~~~~~----~~~~~v~vi~~D~~ 109 (240)
+..+...+++.+.+.++.+|||+|||||.++..+++.. + ++|+|+|+|+.|++.++++.. ....+++++++|+.
T Consensus 58 ~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~ 137 (261)
T PLN02233 58 HRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT 137 (261)
T ss_pred hHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc
Confidence 34445555667778889999999999999999998863 2 599999999999999987542 11257999999999
Q ss_pred cccccccchhhhcccccCCCCceEEEecCC
Q psy17126 110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP 139 (240)
++++++ +.+|.|+++.-
T Consensus 138 ~lp~~~-------------~sfD~V~~~~~ 154 (261)
T PLN02233 138 DLPFDD-------------CYFDAITMGYG 154 (261)
T ss_pred cCCCCC-------------CCEeEEEEecc
Confidence 887653 35788888654
No 54
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.22 E-value=5.9e-11 Score=106.99 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=63.5
Q ss_pred CEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCC
Q psy17126 53 NEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~ 129 (240)
.+|||+|||+|.++..++... ..+|+|+|+|+.+++.+++++...+ ++++++++|+.+. ++. .
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~-------------~ 200 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPG-------------R 200 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCC-------------C
Confidence 689999999999999999875 3699999999999999999876543 5799999998652 111 3
Q ss_pred CceEEEecCCCCCC
Q psy17126 130 PGIRIIGNLPFNVS 143 (240)
Q Consensus 130 ~~~~VvsNlPY~Is 143 (240)
++|.||+||||--.
T Consensus 201 ~fDlIvsNPPyi~~ 214 (307)
T PRK11805 201 RYDLIVSNPPYVDA 214 (307)
T ss_pred CccEEEECCCCCCc
Confidence 58999999999543
No 55
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.22 E-value=2.6e-10 Score=87.50 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccc
Q psy17126 36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTM 113 (240)
Q Consensus 36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~ 113 (240)
.+.+...+++.+.+.++.+|||+|||+|.++..++++. ..+|+++|+++.+++.++++....+ .+++++.+|+....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~- 82 (124)
T TIGR02469 4 KREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEAL- 82 (124)
T ss_pred hHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccC-
Confidence 34566778888888788899999999999999999874 3699999999999999998776543 57899999987531
Q ss_pred cccchhhhcccccCCCCceEEEecCCC
Q psy17126 114 QNMFSEDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~VvsNlPY 140 (240)
... ..++|.|+...+.
T Consensus 83 ~~~-----------~~~~D~v~~~~~~ 98 (124)
T TIGR02469 83 EDS-----------LPEPDRVFIGGSG 98 (124)
T ss_pred hhh-----------cCCCCEEEECCcc
Confidence 111 1357888876544
No 56
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.22 E-value=4.1e-11 Score=106.33 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccc
Q psy17126 39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFT 112 (240)
Q Consensus 39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~ 112 (240)
.++.+++.+++++|++|||||||+|.++..++++...+|+||.+|+...+.+++.+...+ +++++..+|+.+++
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~ 125 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP 125 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC
Confidence 466788889999999999999999999999999844699999999999999998877654 68999999998754
No 57
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.20 E-value=6.5e-11 Score=106.15 Aligned_cols=115 Identities=20% Similarity=0.244 Sum_probs=79.2
Q ss_pred HHHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh--------CCCeEEEEeCCcchHH
Q psy17126 17 IIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR--------RPARLVLIEKDPRFTP 88 (240)
Q Consensus 17 ~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~--------~~~~V~avEid~~m~~ 88 (240)
+++.+.-..+++.|| |.++..+++.|++.+...++.+|+|.+||+|.+...+.+. ....++|+|+++.++.
T Consensus 13 ~l~~~~~~~~k~~G~-~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~ 91 (311)
T PF02384_consen 13 FLKKFAKESRKKLGQ-FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVA 91 (311)
T ss_dssp HHHHHHHCTTTSCGG-C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHH
T ss_pred HHHHHHHHhccccce-eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHH
Confidence 444544345778899 7899999999999999888899999999999998887762 2468999999999998
Q ss_pred HHHHHHhcCC---CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126 89 CLDMLAQASP---CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143 (240)
Q Consensus 89 ~l~~~~~~~~---~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is 143 (240)
.++-++.-.+ .+..+.++|.+..+... ....+|.||+||||...
T Consensus 92 la~~nl~l~~~~~~~~~i~~~d~l~~~~~~-----------~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 92 LAKLNLLLHGIDNSNINIIQGDSLENDKFI-----------KNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HHHHHHHHTTHHCBGCEEEES-TTTSHSCT-----------ST--EEEEEEE--CTCE
T ss_pred HHHhhhhhhccccccccccccccccccccc-----------cccccccccCCCCcccc
Confidence 8876543222 34568899987654221 12468999999999876
No 58
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.19 E-value=1e-10 Score=97.61 Aligned_cols=104 Identities=16% Similarity=0.116 Sum_probs=77.1
Q ss_pred cCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-Ce---------EEEEeCCcchHHHHHHHHhcCC
Q psy17126 29 LSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-AR---------LVLIEKDPRFTPCLDMLAQASP 98 (240)
Q Consensus 29 ~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~---------V~avEid~~m~~~l~~~~~~~~ 98 (240)
+...--.++.++..|+..+++++++.|||.-||+|++....+.... .. ++|+|+|+++++.+++|+...+
T Consensus 6 ~~~~a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag 85 (179)
T PF01170_consen 6 FFGPAPLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG 85 (179)
T ss_dssp SSSSTSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc
Confidence 4445678899999999999999999999999999999988776532 23 8899999999999999987654
Q ss_pred --CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHH
Q psy17126 99 --CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP 145 (240)
Q Consensus 99 --~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~ 145 (240)
..+.+.++|+.++++.. +.+|.||+||||.....
T Consensus 86 ~~~~i~~~~~D~~~l~~~~-------------~~~d~IvtnPPyG~r~~ 121 (179)
T PF01170_consen 86 VEDYIDFIQWDARELPLPD-------------GSVDAIVTNPPYGRRLG 121 (179)
T ss_dssp -CGGEEEEE--GGGGGGTT-------------SBSCEEEEE--STTSHC
T ss_pred cCCceEEEecchhhccccc-------------CCCCEEEECcchhhhcc
Confidence 56899999999987322 35799999999987543
No 59
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.18 E-value=3.9e-10 Score=94.02 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=72.6
Q ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccc
Q psy17126 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMS 110 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~ 110 (240)
=++.+.+...+++.+.+.++.+|||||||+|.++..++++.+ .+|+++|+++.+++.++++....+ .+++++++|+..
T Consensus 13 ~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~ 92 (187)
T PRK08287 13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI 92 (187)
T ss_pred CCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh
Confidence 355667777777888888899999999999999999998753 699999999999999998776543 579999998742
Q ss_pred ccccccchhhhcccccCCCCceEEEecCC
Q psy17126 111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlP 139 (240)
.+. ..+|.|+++-.
T Consensus 93 -~~~--------------~~~D~v~~~~~ 106 (187)
T PRK08287 93 -ELP--------------GKADAIFIGGS 106 (187)
T ss_pred -hcC--------------cCCCEEEECCC
Confidence 111 25788887643
No 60
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.18 E-value=2.8e-10 Score=107.82 Aligned_cols=102 Identities=19% Similarity=0.153 Sum_probs=82.5
Q ss_pred hhhccCccccCCHHH--HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeE
Q psy17126 25 ALKQLSQNFLFEPRL--TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVH 102 (240)
Q Consensus 25 ~~k~~gQ~fl~d~~i--~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~ 102 (240)
-+.-||..|.+.+.+ .+.+++.+.+.++.+|||||||+|.++..+++....+|+|+|+|+.|++.++++......+++
T Consensus 238 ~~~f~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~ 317 (475)
T PLN02336 238 YERVFGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVE 317 (475)
T ss_pred HHHHhCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceE
Confidence 445588888888775 567788888888899999999999999999986546999999999999999887654446799
Q ss_pred EEEcccccccccccchhhhcccccCCCCceEEEecCC
Q psy17126 103 FHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 103 vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP 139 (240)
++++|+.+.++++ +++|.|+++--
T Consensus 318 ~~~~d~~~~~~~~-------------~~fD~I~s~~~ 341 (475)
T PLN02336 318 FEVADCTKKTYPD-------------NSFDVIYSRDT 341 (475)
T ss_pred EEEcCcccCCCCC-------------CCEEEEEECCc
Confidence 9999998866532 35788888643
No 61
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.17 E-value=1.8e-10 Score=96.82 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=62.3
Q ss_pred CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccC
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~ 127 (240)
.++.+|||||||+|.++..++... ..+|+|+|+++.|++.++++.+..+ ++++++++|+.+++. .
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~------------ 110 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-E------------ 110 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-C------------
Confidence 458899999999999999998753 4799999999999999998876654 469999999988643 1
Q ss_pred CCCceEEEecC
Q psy17126 128 GLPGIRIIGNL 138 (240)
Q Consensus 128 ~~~~~~VvsNl 138 (240)
+++|.|++|-
T Consensus 111 -~~fDlV~~~~ 120 (187)
T PRK00107 111 -EKFDVVTSRA 120 (187)
T ss_pred -CCccEEEEcc
Confidence 3689999984
No 62
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.17 E-value=2.7e-10 Score=104.18 Aligned_cols=87 Identities=21% Similarity=0.201 Sum_probs=67.3
Q ss_pred HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchh
Q psy17126 41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE 119 (240)
Q Consensus 41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~ 119 (240)
..+++.+......+|||+|||+|.++..++++.+ .+|+++|+|+.|++.++++.+..+-..+++.+|+... ..
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-~~----- 259 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-IK----- 259 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-cC-----
Confidence 4455556544556899999999999999998754 5899999999999999988765443457788887541 11
Q ss_pred hhcccccCCCCceEEEecCCCCC
Q psy17126 120 DRRRDWSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 120 ~~~~~~~~~~~~~~VvsNlPY~I 142 (240)
+++|.||+|+||+-
T Consensus 260 ---------~~fDlIvsNPPFH~ 273 (342)
T PRK09489 260 ---------GRFDMIISNPPFHD 273 (342)
T ss_pred ---------CCccEEEECCCccC
Confidence 36899999999863
No 63
>PRK14968 putative methyltransferase; Provisional
Probab=99.15 E-value=3.3e-10 Score=93.44 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=69.5
Q ss_pred HHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CC--eEEEEcccccccccccch
Q psy17126 42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CP--VHFHLGDVMSFTMQNMFS 118 (240)
Q Consensus 42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~--v~vi~~D~~~~~~~~~~~ 118 (240)
.+++.+...++.+|||+|||+|.++..++.+ ..+|+|+|+++.+++.++++....+ .+ +.++++|+.+. +.+
T Consensus 14 ~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~--- 88 (188)
T PRK14968 14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRG--- 88 (188)
T ss_pred HHHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccc---
Confidence 3444444467889999999999999999998 5799999999999999988765433 22 88999998652 111
Q ss_pred hhhcccccCCCCceEEEecCCCCCCHHH
Q psy17126 119 EDRRRDWSEGLPGIRIIGNLPFNVSTPL 146 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~VvsNlPY~Iss~i 146 (240)
..+|.|++|+||....+.
T Consensus 89 ----------~~~d~vi~n~p~~~~~~~ 106 (188)
T PRK14968 89 ----------DKFDVILFNPPYLPTEEE 106 (188)
T ss_pred ----------cCceEEEECCCcCCCCch
Confidence 258999999999875543
No 64
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=99.15 E-value=9.6e-11 Score=112.56 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=80.3
Q ss_pred hccCccccCCHHHHHHHHHHcCCC-------CCCEEEEECCchhHHHHHHHhhCC---------CeEEEEeCCcchHHHH
Q psy17126 27 KQLSQNFLFEPRLTDKIVRNAGTI-------TGNEVCEVGPGPGSITRSILNRRP---------ARLVLIEKDPRFTPCL 90 (240)
Q Consensus 27 k~~gQ~fl~d~~i~~~iv~~~~~~-------~~~~VLEIG~GtG~lt~~La~~~~---------~~V~avEid~~m~~~l 90 (240)
|++|| |.+++.+++.|++.+... ...+|||.|||+|.+...++.+.. ..++|+|+|+..+..+
T Consensus 1 K~~Gq-fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a 79 (524)
T TIGR02987 1 KAYGT-FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRA 79 (524)
T ss_pred CCCcc-cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHH
Confidence 57899 889999999999876321 345899999999999998886531 4789999999999999
Q ss_pred HHHHhcCC-CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126 91 DMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143 (240)
Q Consensus 91 ~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is 143 (240)
+.++.... ..+.+.++|.+...+... .. ..+.||+||+||||.-.
T Consensus 80 ~~~l~~~~~~~~~i~~~d~l~~~~~~~-~~-------~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 80 KKLLGEFALLEINVINFNSLSYVLLNI-ES-------YLDLFDIVITNPPYGRL 125 (524)
T ss_pred HHHHhhcCCCCceeeeccccccccccc-cc-------ccCcccEEEeCCCcccc
Confidence 88765543 346777787765332110 00 11468999999999754
No 65
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.15 E-value=1.7e-10 Score=106.54 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=81.1
Q ss_pred ccCCHHHHHHHHHH----cCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcc
Q psy17126 33 FLFEPRLTDKIVRN----AGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGD 107 (240)
Q Consensus 33 fl~d~~i~~~iv~~----~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D 107 (240)
|-++..+.+.+.+. +...++.+|||+|||+|.++..++..+ .+|+|||+++.+++.++++++..+ .+++++++|
T Consensus 211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d 289 (374)
T TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALD 289 (374)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 55667777666543 333456899999999999999999875 799999999999999999876554 589999999
Q ss_pred cccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126 108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153 (240)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~ 153 (240)
+.++.. .. ..++|+||.||||.-..+.+.+.+..
T Consensus 290 ~~~~~~-~~-----------~~~~D~vi~DPPr~G~~~~~l~~l~~ 323 (374)
T TIGR02085 290 SAKFAT-AQ-----------MSAPELVLVNPPRRGIGKELCDYLSQ 323 (374)
T ss_pred HHHHHH-hc-----------CCCCCEEEECCCCCCCcHHHHHHHHh
Confidence 976431 11 02479999999997545555455544
No 66
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.15 E-value=3e-10 Score=101.82 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=63.4
Q ss_pred CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhccccc
Q psy17126 49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWS 126 (240)
Q Consensus 49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~ 126 (240)
..++++|||+|||||.|++..++.++.+|+|+|+|+..++.+++|+...+ .++.+. ... +...
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~--~~~~----------- 223 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSE--DLVE----------- 223 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTS--CTCC-----------
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eec--cccc-----------
Confidence 35788999999999999999999987899999999999999999876543 445442 111 1111
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155 (240)
Q Consensus 127 ~~~~~~~VvsNlPY~Iss~il~~ll~~~~ 155 (240)
.++|+|++| |...+|..++.+..
T Consensus 224 --~~~dlvvAN----I~~~vL~~l~~~~~ 246 (295)
T PF06325_consen 224 --GKFDLVVAN----ILADVLLELAPDIA 246 (295)
T ss_dssp --S-EEEEEEE----S-HHHHHHHHHHCH
T ss_pred --ccCCEEEEC----CCHHHHHHHHHHHH
Confidence 368999999 66667777777654
No 67
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.12 E-value=6.1e-10 Score=95.05 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=72.4
Q ss_pred HHHHHHHHHcC--CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccc
Q psy17126 38 RLTDKIVRNAG--TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTM 113 (240)
Q Consensus 38 ~i~~~iv~~~~--~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~ 113 (240)
.+...+++.+. ..++.+|||||||+|.++..++..+ .+|+|+|+|+.|+..++++..... .+++++++|+.+.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-
Confidence 34556776665 5678999999999999999999874 699999999999999998765433 47999999998754
Q ss_pred cccchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHH
Q psy17126 114 QNMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQ 152 (240)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~ 152 (240)
+++|.|+++-. ++.+.+.+.+.+.
T Consensus 118 ---------------~~fD~ii~~~~l~~~~~~~~~~~l~ 142 (219)
T TIGR02021 118 ---------------GEFDIVVCMDVLIHYPASDMAKALG 142 (219)
T ss_pred ---------------CCcCEEEEhhHHHhCCHHHHHHHHH
Confidence 14677776533 4444443434433
No 68
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.12 E-value=1.4e-10 Score=101.30 Aligned_cols=84 Identities=20% Similarity=0.329 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc
Q psy17126 38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM 116 (240)
Q Consensus 38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~ 116 (240)
.....+++.+...++.+|||||||+|.++..++.+. ..+|+|+|+++.|++.+++ .+++++++|+.++. ..
T Consensus 16 ~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~------~~~~~~~~d~~~~~-~~- 87 (255)
T PRK14103 16 RPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE------RGVDARTGDVRDWK-PK- 87 (255)
T ss_pred CHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh------cCCcEEEcChhhCC-CC-
Confidence 345677888888888999999999999999999874 3699999999999998864 25889999987652 11
Q ss_pred chhhhcccccCCCCceEEEecCCCC
Q psy17126 117 FSEDRRRDWSEGLPGIRIIGNLPFN 141 (240)
Q Consensus 117 ~~~~~~~~~~~~~~~~~VvsNlPY~ 141 (240)
+++|.|++|..+.
T Consensus 88 ------------~~fD~v~~~~~l~ 100 (255)
T PRK14103 88 ------------PDTDVVVSNAALQ 100 (255)
T ss_pred ------------CCceEEEEehhhh
Confidence 3689999988753
No 69
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.12 E-value=4.4e-10 Score=101.95 Aligned_cols=80 Identities=19% Similarity=0.113 Sum_probs=69.1
Q ss_pred cccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccc
Q psy17126 32 NFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDV 108 (240)
Q Consensus 32 ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~ 108 (240)
.+..++.+...+++.+.++++++|||||||+|.++..+++... ++|+++|+++.|++.+++++...+ .+++++++|+
T Consensus 61 ~~~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~ 140 (322)
T PRK13943 61 STSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG 140 (322)
T ss_pred ccCCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh
Confidence 3667899999999999998999999999999999999998642 479999999999999998776544 6799999998
Q ss_pred ccc
Q psy17126 109 MSF 111 (240)
Q Consensus 109 ~~~ 111 (240)
.+.
T Consensus 141 ~~~ 143 (322)
T PRK13943 141 YYG 143 (322)
T ss_pred hhc
Confidence 764
No 70
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.11 E-value=2.7e-10 Score=106.93 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=76.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccc
Q psy17126 39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMF 117 (240)
Q Consensus 39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~ 117 (240)
+.+.+.+.+.+.++.+|||+|||+|.++..+++. ..+|+|+|+++.|++.+++++...+ .|++++++|+.+. ++.+.
T Consensus 280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~-l~~~~ 357 (431)
T TIGR00479 280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV-LPKQP 357 (431)
T ss_pred HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH-HHHHH
Confidence 3445556666677889999999999999999987 4799999999999999999876544 6899999999763 22210
Q ss_pred hhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126 118 SEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ 152 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~ 152 (240)
+ ....+|.|+.++|+.-..+.+.+.+.
T Consensus 358 -------~-~~~~~D~vi~dPPr~G~~~~~l~~l~ 384 (431)
T TIGR00479 358 -------W-AGQIPDVLLLDPPRKGCAAEVLRTII 384 (431)
T ss_pred -------h-cCCCCCEEEECcCCCCCCHHHHHHHH
Confidence 0 01357999999998642333334443
No 71
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.11 E-value=3e-10 Score=105.73 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=76.0
Q ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEcccc
Q psy17126 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVM 109 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~ 109 (240)
|..|....+..+..+ .++.+|||+|||||.++..++..++.+|++||+|+.+++.+++++...+ .+++++++|+.
T Consensus 204 ~flDqr~~R~~~~~~--~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~ 281 (396)
T PRK15128 204 YYLDQRDSRLATRRY--VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF 281 (396)
T ss_pred cChhhHHHHHHHHHh--cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH
Confidence 555555555555554 3578999999999999988776655699999999999999999876543 37899999997
Q ss_pred cccccccchhhhcccccCCCCceEEEecCCCCCCHH
Q psy17126 110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP 145 (240)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~ 145 (240)
++ +..+.. .+.+||.||.||||...+.
T Consensus 282 ~~-l~~~~~--------~~~~fDlVilDPP~f~~~k 308 (396)
T PRK15128 282 KL-LRTYRD--------RGEKFDVIVMDPPKFVENK 308 (396)
T ss_pred HH-HHHHHh--------cCCCCCEEEECCCCCCCCh
Confidence 64 112110 1146899999999977654
No 72
>KOG2904|consensus
Probab=99.11 E-value=3.1e-10 Score=99.47 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=71.3
Q ss_pred HHHHHHHHcCC---CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccc
Q psy17126 39 LTDKIVRNAGT---ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFT 112 (240)
Q Consensus 39 i~~~iv~~~~~---~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~ 112 (240)
+++.+++.+.. ..+..+||+|||+|+++..++... ..+|+|||.++..+..+.+|++.+. +++.+++-++..--
T Consensus 133 ~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~ 212 (328)
T KOG2904|consen 133 WVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDA 212 (328)
T ss_pred HHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccc
Confidence 56666665542 345689999999999999999864 3799999999999999999987654 78888866554321
Q ss_pred ccccchhhhcccccCCCCceEEEecCCCCCCHHH
Q psy17126 113 MQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146 (240)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~i 146 (240)
+...-. ..++.|.+|||||| |.+..
T Consensus 213 ~~~~~l--------~~~~~dllvsNPPY-I~~dD 237 (328)
T KOG2904|consen 213 SDEHPL--------LEGKIDLLVSNPPY-IRKDD 237 (328)
T ss_pred cccccc--------ccCceeEEecCCCc-ccccc
Confidence 111100 01578999999999 44443
No 73
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.11 E-value=2.3e-10 Score=99.78 Aligned_cols=86 Identities=20% Similarity=0.234 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126 37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN 115 (240)
Q Consensus 37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~ 115 (240)
......++..+.+.++.+|||||||+|.++..++... ..+|+|+|+++.|++.++++. .++.++.+|+..+...
T Consensus 17 ~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~~~- 91 (258)
T PRK01683 17 TRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASWQPP- 91 (258)
T ss_pred hcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhccCCC-
Confidence 3456778888888889999999999999999999874 369999999999999998643 4688999998764311
Q ss_pred cchhhhcccccCCCCceEEEecCCC
Q psy17126 116 MFSEDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~VvsNlPY 140 (240)
.++|.|++|..+
T Consensus 92 -------------~~fD~v~~~~~l 103 (258)
T PRK01683 92 -------------QALDLIFANASL 103 (258)
T ss_pred -------------CCccEEEEccCh
Confidence 357999999775
No 74
>PLN02672 methionine S-methyltransferase
Probab=99.10 E-value=3.1e-10 Score=116.01 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=75.1
Q ss_pred hccCccccCCHHH------HHHHHHHcCCC-----CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHH
Q psy17126 27 KQLSQNFLFEPRL------TDKIVRNAGTI-----TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLA 94 (240)
Q Consensus 27 k~~gQ~fl~d~~i------~~~iv~~~~~~-----~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~ 94 (240)
..||-.|.++|.+ ...+++.+... ++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.+++|+
T Consensus 83 ~F~~l~~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL 162 (1082)
T ss_pred EecCCceeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 3455556555543 34445443221 246899999999999999998753 69999999999999999987
Q ss_pred hcCC-----------------CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126 95 QASP-----------------CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST 144 (240)
Q Consensus 95 ~~~~-----------------~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss 144 (240)
.... ++++++++|+.+.- ... ..++|+|||||||-.++
T Consensus 163 ~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~-~~~-----------~~~fDlIVSNPPYI~~~ 217 (1082)
T PLN02672 163 YLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC-RDN-----------NIELDRIVGCIPQILNP 217 (1082)
T ss_pred HHcCcccccccccccccccccccEEEEECchhhhc-ccc-----------CCceEEEEECCCcCCCc
Confidence 6421 46999999997532 110 12589999999994433
No 75
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.10 E-value=4.6e-10 Score=94.35 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=65.5
Q ss_pred cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccc
Q psy17126 34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMS 110 (240)
Q Consensus 34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~ 110 (240)
++.+.+...+++.+.+.++.+|||+|||+|.+|..++... ..+|+|+|+|+.|++.++++++..+ .+++++++|+.+
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 5556677778888888889999999999999999998653 3699999999999999999876554 579999999865
No 76
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.09 E-value=8.4e-10 Score=96.24 Aligned_cols=78 Identities=18% Similarity=0.313 Sum_probs=63.0
Q ss_pred CCCCCEEEEECCchhHHHHHHHhh---CCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcc
Q psy17126 49 TITGNEVCEVGPGPGSITRSILNR---RPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRR 123 (240)
Q Consensus 49 ~~~~~~VLEIG~GtG~lt~~La~~---~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~ 123 (240)
+.++.+|||||||+|.++..+++. ...+|+|+|+|+.|++.++++....+ .+++++++|+.+++++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--------- 124 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--------- 124 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC---------
Confidence 347789999999999999998873 23699999999999999999876543 5799999999886542
Q ss_pred cccCCCCceEEEecCCCC
Q psy17126 124 DWSEGLPGIRIIGNLPFN 141 (240)
Q Consensus 124 ~~~~~~~~~~VvsNlPY~ 141 (240)
.+|.|++|+...
T Consensus 125 ------~~D~vv~~~~l~ 136 (247)
T PRK15451 125 ------NASMVVLNFTLQ 136 (247)
T ss_pred ------CCCEEehhhHHH
Confidence 357889887753
No 77
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.08 E-value=6.1e-10 Score=104.58 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=78.5
Q ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
+.++..-...++..+++.++++|||+|||+|..|..+++... .+|+|+|+++.++..++++++..+.+++++++|+.+.
T Consensus 226 ~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~ 305 (427)
T PRK10901 226 VSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDP 305 (427)
T ss_pred EEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 334444455666778888999999999999999999998753 5999999999999999998877665578999999864
Q ss_pred cccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126 112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143 (240)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is 143 (240)
+ ..+. ..++|.|+.|+|+..+
T Consensus 306 ~--~~~~---------~~~fD~Vl~D~Pcs~~ 326 (427)
T PRK10901 306 A--QWWD---------GQPFDRILLDAPCSAT 326 (427)
T ss_pred h--hhcc---------cCCCCEEEECCCCCcc
Confidence 2 1111 1468999999998743
No 78
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.08 E-value=5.2e-10 Score=97.82 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=70.1
Q ss_pred HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccc
Q psy17126 40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMF 117 (240)
Q Consensus 40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~ 117 (240)
+..+++.+. .++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++....+ ++++++++|+.++.. ..
T Consensus 34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~--~~ 109 (255)
T PRK11036 34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ--HL 109 (255)
T ss_pred HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh--hc
Confidence 345666665 456799999999999999999985 799999999999999998775543 579999999987531 11
Q ss_pred hhhhcccccCCCCceEEEecCCC-CCCHH
Q psy17126 118 SEDRRRDWSEGLPGIRIIGNLPF-NVSTP 145 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~VvsNlPY-~Iss~ 145 (240)
.+.+|.|+++..+ +++.|
T Consensus 110 ----------~~~fD~V~~~~vl~~~~~~ 128 (255)
T PRK11036 110 ----------ETPVDLILFHAVLEWVADP 128 (255)
T ss_pred ----------CCCCCEEEehhHHHhhCCH
Confidence 1367888887663 34433
No 79
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.07 E-value=1.2e-09 Score=92.90 Aligned_cols=88 Identities=6% Similarity=-0.039 Sum_probs=66.9
Q ss_pred CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCC
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~ 128 (240)
.++.+|||||||+|.++..++... ..+++|||+|+.|++.++++. .+++++++|+.+ ++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-~~~~------------- 103 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-PFKD------------- 103 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-CCCC-------------
Confidence 467789999999999999998863 479999999999999998643 357888999877 4322
Q ss_pred CCceEEEecCC-CCCCHHHHHHHHHhcc
Q psy17126 129 LPGIRIIGNLP-FNVSTPLIIKWIQAIS 155 (240)
Q Consensus 129 ~~~~~VvsNlP-Y~Iss~il~~ll~~~~ 155 (240)
+++|.|++|-- ++++...+.+.+....
T Consensus 104 ~sfD~V~~~~vL~hl~p~~~~~~l~el~ 131 (204)
T TIGR03587 104 NFFDLVLTKGVLIHINPDNLPTAYRELY 131 (204)
T ss_pred CCEEEEEECChhhhCCHHHHHHHHHHHH
Confidence 46899998876 3565444555555443
No 80
>PRK05785 hypothetical protein; Provisional
Probab=99.07 E-value=4.3e-10 Score=97.06 Aligned_cols=86 Identities=9% Similarity=0.086 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHcC--CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 35 FEPRLTDKIVRNAG--TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 35 ~d~~i~~~iv~~~~--~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
.+..+...+++.+. ..++.+|||||||||.++..+++....+|+|+|+|++|++.++++ ...+++|+.+++
T Consensus 33 ~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-------~~~~~~d~~~lp 105 (226)
T PRK05785 33 QDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-------DDKVVGSFEALP 105 (226)
T ss_pred CcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-------cceEEechhhCC
Confidence 34445445554432 134689999999999999999987436999999999999998752 235789999887
Q ss_pred ccccchhhhcccccCCCCceEEEecCCC
Q psy17126 113 MQNMFSEDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY 140 (240)
+++ +++|.|+++.-.
T Consensus 106 ~~d-------------~sfD~v~~~~~l 120 (226)
T PRK05785 106 FRD-------------KSFDVVMSSFAL 120 (226)
T ss_pred CCC-------------CCEEEEEecChh
Confidence 654 468999998754
No 81
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.07 E-value=7.2e-10 Score=93.25 Aligned_cols=102 Identities=14% Similarity=0.057 Sum_probs=77.0
Q ss_pred cccCCHHHHHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccc
Q psy17126 32 NFLFEPRLTDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDV 108 (240)
Q Consensus 32 ~fl~d~~i~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~ 108 (240)
...++..+.+.+...+. ...+.+|||++||+|.++..++++++.+|++||.|+.+++.++++++..+ ++++++++|+
T Consensus 29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~ 108 (189)
T TIGR00095 29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA 108 (189)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH
Confidence 35666667777766653 23578999999999999999999987799999999999999999876543 4789999999
Q ss_pred ccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126 109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I 142 (240)
.+. +..+.. ....+|+|+..|||.-
T Consensus 109 ~~~-l~~~~~--------~~~~~dvv~~DPPy~~ 133 (189)
T TIGR00095 109 LRA-LKFLAK--------KPTFDNVIYLDPPFFN 133 (189)
T ss_pred HHH-HHHhhc--------cCCCceEEEECcCCCC
Confidence 653 111110 0123688999999964
No 82
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.06 E-value=2.3e-09 Score=90.34 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=72.5
Q ss_pred cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126 34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM 109 (240)
Q Consensus 34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~ 109 (240)
++.+.+....+..+.+.++.+|||+|||+|.++..++... ..+|+++|+++.|++.++++....+ .+++++.+|+.
T Consensus 23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~ 102 (198)
T PRK00377 23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP 102 (198)
T ss_pred CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence 4445666666788888999999999999999999988752 3699999999999999998876654 67999999987
Q ss_pred cccccccchhhhcccccCCCCceEEEecC
Q psy17126 110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138 (240)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNl 138 (240)
+.- +.. .+.+|.|+++.
T Consensus 103 ~~l-~~~-----------~~~~D~V~~~~ 119 (198)
T PRK00377 103 EIL-FTI-----------NEKFDRIFIGG 119 (198)
T ss_pred hhH-hhc-----------CCCCCEEEECC
Confidence 531 111 13578888864
No 83
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.06 E-value=7.3e-10 Score=100.36 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=63.3
Q ss_pred CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC---CCCeEEEE-cccccccccccchhhhcccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHL-GDVMSFTMQNMFSEDRRRDW 125 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~---~~~v~vi~-~D~~~~~~~~~~~~~~~~~~ 125 (240)
.+.+|||||||+|.+...++.+. ..+++|+|+|+.+++.++++++.. .+++++++ .|...+ +..+..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i-~~~i~~------- 185 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAI-FKGIIH------- 185 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhh-hhcccc-------
Confidence 46899999999999888887653 369999999999999999988754 25677764 333221 111100
Q ss_pred cCCCCceEEEecCCCCCCHHH
Q psy17126 126 SEGLPGIRIIGNLPFNVSTPL 146 (240)
Q Consensus 126 ~~~~~~~~VvsNlPY~Iss~i 146 (240)
..+.+|.|++||||+.+...
T Consensus 186 -~~~~fDlivcNPPf~~s~~e 205 (321)
T PRK11727 186 -KNERFDATLCNPPFHASAAE 205 (321)
T ss_pred -cCCceEEEEeCCCCcCcchh
Confidence 11468999999999987654
No 84
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.05 E-value=1.4e-09 Score=96.92 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=68.5
Q ss_pred CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~ 129 (240)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++...+-++++..+|+...+++ +
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~--------------~ 183 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQ--------------E 183 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccccc--------------C
Confidence 345699999999999999999985 7999999999999999987765445788888888765431 3
Q ss_pred CceEEEecCCC-CCCHHHHHHHHHhc
Q psy17126 130 PGIRIIGNLPF-NVSTPLIIKWIQAI 154 (240)
Q Consensus 130 ~~~~VvsNlPY-~Iss~il~~ll~~~ 154 (240)
.+|.|+++..+ .+..+.+..++...
T Consensus 184 ~fD~I~~~~vl~~l~~~~~~~~l~~~ 209 (287)
T PRK12335 184 EYDFILSTVVLMFLNRERIPAIIKNM 209 (287)
T ss_pred CccEEEEcchhhhCCHHHHHHHHHHH
Confidence 68999998764 34444445555543
No 85
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.2e-09 Score=97.31 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=76.8
Q ss_pred HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccch
Q psy17126 41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFS 118 (240)
Q Consensus 41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~ 118 (240)
+.+++.+....+.+|||+|||.|.++..+++..+ .+|+-+|+|...++.+++++.... .+..++.+|..+- ..
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-v~---- 222 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-VE---- 222 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-cc----
Confidence 4577777777677999999999999999999864 799999999999999999886543 3335677776431 11
Q ss_pred hhhcccccCCCCceEEEecCCCCCCHHHHH----HHHHhcc
Q psy17126 119 EDRRRDWSEGLPGIRIIGNLPFNVSTPLII----KWIQAIS 155 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~VvsNlPY~Iss~il~----~ll~~~~ 155 (240)
++||.||+||||.-...... +++....
T Consensus 223 ----------~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~ 253 (300)
T COG2813 223 ----------GKFDLIISNPPFHAGKAVVHSLAQEIIAAAA 253 (300)
T ss_pred ----------ccccEEEeCCCccCCcchhHHHHHHHHHHHH
Confidence 26899999999987666666 5555443
No 86
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.04 E-value=5.5e-10 Score=94.68 Aligned_cols=78 Identities=19% Similarity=0.170 Sum_probs=61.6
Q ss_pred CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccc-ccccccccchhhhcccccC
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDV-MSFTMQNMFSEDRRRDWSE 127 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~-~~~~~~~~~~~~~~~~~~~ 127 (240)
++.+|||||||+|.++..+++..+ .+|+|||+++.|++.++++....+ .+++++++|+ ..++ ..++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~--~~~~~-------- 109 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL--DMFPD-------- 109 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH--HHcCc--------
Confidence 678999999999999999998743 589999999999999998775544 6799999999 5443 11111
Q ss_pred CCCceEEEecCC
Q psy17126 128 GLPGIRIIGNLP 139 (240)
Q Consensus 128 ~~~~~~VvsNlP 139 (240)
+.+|.|++|.|
T Consensus 110 -~~~D~V~~~~~ 120 (202)
T PRK00121 110 -GSLDRIYLNFP 120 (202)
T ss_pred -cccceEEEECC
Confidence 35788998865
No 87
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.03 E-value=1.2e-09 Score=96.32 Aligned_cols=86 Identities=16% Similarity=-0.024 Sum_probs=70.3
Q ss_pred HHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhh
Q psy17126 44 VRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSED 120 (240)
Q Consensus 44 v~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~ 120 (240)
+..+.+.++.+|||+|||+|..|..++... .+.|+|+|+++.+++.++++++..+ .+++++++|+..++...
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~----- 138 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAV----- 138 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhc-----
Confidence 345677889999999999999999998863 2689999999999999999887665 67999999987643211
Q ss_pred hcccccCCCCceEEEecCCCCC
Q psy17126 121 RRRDWSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 121 ~~~~~~~~~~~~~VvsNlPY~I 142 (240)
+.+|+|+.++|+.-
T Consensus 139 --------~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 139 --------PKFDAILLDAPCSG 152 (264)
T ss_pred --------cCCCEEEEcCCCCC
Confidence 35899999999763
No 88
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.03 E-value=1.2e-09 Score=79.42 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=56.0
Q ss_pred EEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceEEE
Q psy17126 56 CEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII 135 (240)
Q Consensus 56 LEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~Vv 135 (240)
||+|||+|..+..++++...+|+++|+++.+++.++++... .++.++++|+.++++++ +.+|.|+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~~-------------~sfD~v~ 65 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDLPFPD-------------NSFDVVF 65 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSSSS-T-------------T-EEEEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhCcccc-------------ccccccc
Confidence 79999999999999998457999999999999999986542 56779999999988764 4689988
Q ss_pred ecCCC
Q psy17126 136 GNLPF 140 (240)
Q Consensus 136 sNlPY 140 (240)
++--+
T Consensus 66 ~~~~~ 70 (95)
T PF08241_consen 66 SNSVL 70 (95)
T ss_dssp EESHG
T ss_pred cccce
Confidence 87654
No 89
>PRK04266 fibrillarin; Provisional
Probab=99.02 E-value=2.8e-09 Score=92.15 Aligned_cols=85 Identities=15% Similarity=0.051 Sum_probs=65.2
Q ss_pred HHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcc
Q psy17126 45 RNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRR 123 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~ 123 (240)
+.+++.++.+|||+|||+|.++..++... .++|+|+|+++.|++.+.+++... .|+.++.+|+.......-+.
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l~----- 139 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHVV----- 139 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhcc-----
Confidence 36788899999999999999999999874 368999999999999887765543 68999999987521000011
Q ss_pred cccCCCCceEEEecCCC
Q psy17126 124 DWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 124 ~~~~~~~~~~VvsNlPY 140 (240)
..+|.|+++++.
T Consensus 140 -----~~~D~i~~d~~~ 151 (226)
T PRK04266 140 -----EKVDVIYQDVAQ 151 (226)
T ss_pred -----ccCCEEEECCCC
Confidence 247999988763
No 90
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2.3e-09 Score=95.80 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=62.6
Q ss_pred CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeE----EEEcccccccccccchhhhcccc
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVH----FHLGDVMSFTMQNMFSEDRRRDW 125 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~----vi~~D~~~~~~~~~~~~~~~~~~ 125 (240)
.++.+|||+|||||.|++..++.++.+|+|+|+|+-.++.+++|+... ++. .-..+.....
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N--~v~~~~~~~~~~~~~~~------------- 225 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN--GVELLVQAKGFLLLEVP------------- 225 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHc--CCchhhhcccccchhhc-------------
Confidence 488999999999999999999998889999999999999999987653 233 1111221111
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155 (240)
Q Consensus 126 ~~~~~~~~VvsNlPY~Iss~il~~ll~~~~ 155 (240)
..+++|+||+|+ ++.+ +.++..+..
T Consensus 226 -~~~~~DvIVANI---LA~v-l~~La~~~~ 250 (300)
T COG2264 226 -ENGPFDVIVANI---LAEV-LVELAPDIK 250 (300)
T ss_pred -ccCcccEEEehh---hHHH-HHHHHHHHH
Confidence 124789999996 4444 446666544
No 91
>PRK08317 hypothetical protein; Provisional
Probab=99.01 E-value=3.1e-09 Score=90.22 Aligned_cols=89 Identities=19% Similarity=0.218 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc
Q psy17126 39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM 116 (240)
Q Consensus 39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~ 116 (240)
+.+.+++.+.+.++.+|||+|||+|.++..++... ..+|+|+|+++.+++.++++......+++++.+|+...++..
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~- 85 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPD- 85 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCC-
Confidence 44567777888889999999999999999999874 268999999999999998864333478999999998765432
Q ss_pred chhhhcccccCCCCceEEEecCCC
Q psy17126 117 FSEDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 117 ~~~~~~~~~~~~~~~~~VvsNlPY 140 (240)
+.+|.|+++.-+
T Consensus 86 ------------~~~D~v~~~~~~ 97 (241)
T PRK08317 86 ------------GSFDAVRSDRVL 97 (241)
T ss_pred ------------CCceEEEEechh
Confidence 357777776543
No 92
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.00 E-value=3.8e-09 Score=89.13 Aligned_cols=99 Identities=12% Similarity=0.171 Sum_probs=71.5
Q ss_pred HHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhh
Q psy17126 42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDR 121 (240)
Q Consensus 42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~ 121 (240)
.+++.+...+..++||+|||.|.-+..||++| -.|+|+|+|+..++.+++.++..+-.++..+.|+.+.+++.
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G-~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~------ 93 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQG-FDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPE------ 93 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TT------
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccC------
Confidence 35555666677899999999999999999996 69999999999999998877655556889999998766532
Q ss_pred cccccCCCCceEEEecC-CCCCCHHHHHHHHHhcc
Q psy17126 122 RRDWSEGLPGIRIIGNL-PFNVSTPLIIKWIQAIS 155 (240)
Q Consensus 122 ~~~~~~~~~~~~VvsNl-PY~Iss~il~~ll~~~~ 155 (240)
.+|.|++.. ..++..+.+.++++.+.
T Consensus 94 --------~yD~I~st~v~~fL~~~~~~~i~~~m~ 120 (192)
T PF03848_consen 94 --------EYDFIVSTVVFMFLQRELRPQIIENMK 120 (192)
T ss_dssp --------TEEEEEEESSGGGS-GGGHHHHHHHHH
T ss_pred --------CcCEEEEEEEeccCCHHHHHHHHHHHH
Confidence 468888753 34566666666666654
No 93
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.00 E-value=1e-09 Score=92.34 Aligned_cols=79 Identities=18% Similarity=0.221 Sum_probs=62.3
Q ss_pred CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCC
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~ 128 (240)
...+|||||||+|.++..++.+.+ ..|+|||+++.|++.+++++...+ .|++++++|+.++. ...++ .
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~-~~~~~---------~ 85 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELL-DKFFP---------D 85 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHH-HhhCC---------C
Confidence 456899999999999999998753 689999999999999988765443 68999999998753 11111 1
Q ss_pred CCceEEEecCC
Q psy17126 129 LPGIRIIGNLP 139 (240)
Q Consensus 129 ~~~~~VvsNlP 139 (240)
+.++.|+.|.|
T Consensus 86 ~~~d~v~~~~p 96 (194)
T TIGR00091 86 GSLSKVFLNFP 96 (194)
T ss_pred CceeEEEEECC
Confidence 35789999975
No 94
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.99 E-value=4.8e-09 Score=89.55 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=69.1
Q ss_pred HHHHHHHcC---CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccccc
Q psy17126 40 TDKIVRNAG---TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQ 114 (240)
Q Consensus 40 ~~~iv~~~~---~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~ 114 (240)
.+.+++.+. ..++.+|||||||+|.++..+++.+ .+|+|+|+++.|+..++++....+ ++++++.+|+...
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--- 124 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--- 124 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc---
Confidence 444555543 3567899999999999999999875 589999999999999998765433 4789999994321
Q ss_pred ccchhhhcccccCCCCceEEEecCCC-CCCHHHHHHHHH
Q psy17126 115 NMFSEDRRRDWSEGLPGIRIIGNLPF-NVSTPLIIKWIQ 152 (240)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~VvsNlPY-~Iss~il~~ll~ 152 (240)
. +.+|.|+++-.+ ..+.+-+..++.
T Consensus 125 ~-------------~~fD~v~~~~~l~~~~~~~~~~~l~ 150 (230)
T PRK07580 125 L-------------GRFDTVVCLDVLIHYPQEDAARMLA 150 (230)
T ss_pred c-------------CCcCEEEEcchhhcCCHHHHHHHHH
Confidence 1 357888876554 445555444444
No 95
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.99 E-value=4.4e-09 Score=93.89 Aligned_cols=75 Identities=20% Similarity=0.177 Sum_probs=58.4
Q ss_pred CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccC
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~ 127 (240)
.++.+|||+|||+|.++..+++.++.+|+|+|+|+.+++.++++....+ .++.++.+|.... .
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~--~------------- 222 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP--I------------- 222 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc--c-------------
Confidence 4679999999999999999988766799999999999999999876433 4566666663221 0
Q ss_pred CCCceEEEecCC
Q psy17126 128 GLPGIRIIGNLP 139 (240)
Q Consensus 128 ~~~~~~VvsNlP 139 (240)
.+++|.|++|+.
T Consensus 223 ~~~fDlVvan~~ 234 (288)
T TIGR00406 223 EGKADVIVANIL 234 (288)
T ss_pred CCCceEEEEecC
Confidence 136899999964
No 96
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.99 E-value=7.1e-10 Score=94.35 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=73.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126 40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS 118 (240)
Q Consensus 40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~ 118 (240)
+..++..+++....+|.|+|||+|..|..|+++.+ +.|+|+|.|++|++.++++ ..++++..+|+..+..+
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r----lp~~~f~~aDl~~w~p~---- 90 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR----LPDATFEEADLRTWKPE---- 90 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh----CCCCceecccHhhcCCC----
Confidence 45577788888889999999999999999999964 7999999999999998753 26799999999875432
Q ss_pred hhhcccccCCCCceEEEecCCCCC---CHHHHHHHHHh
Q psy17126 119 EDRRRDWSEGLPGIRIIGNLPFNV---STPLIIKWIQA 153 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~VvsNlPY~I---ss~il~~ll~~ 153 (240)
.+.|++++|--++- ...++.+|+.+
T Consensus 91 ----------~~~dllfaNAvlqWlpdH~~ll~rL~~~ 118 (257)
T COG4106 91 ----------QPTDLLFANAVLQWLPDHPELLPRLVSQ 118 (257)
T ss_pred ----------CccchhhhhhhhhhccccHHHHHHHHHh
Confidence 35688888854321 23445555554
No 97
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.98 E-value=2e-09 Score=101.33 Aligned_cols=98 Identities=12% Similarity=0.121 Sum_probs=76.7
Q ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccc
Q psy17126 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVM 109 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~ 109 (240)
|.++......++..+++.++.+|||+|||+|..|..++... .++|+|+|+++.+++.++++++..+ .+++++++|+.
T Consensus 219 ~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~ 298 (431)
T PRK14903 219 ATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE 298 (431)
T ss_pred EEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence 34444444555556788899999999999999999999863 4799999999999999999887765 56899999998
Q ss_pred cccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126 110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I 142 (240)
+++ .... +.||.|+.+.|+.-
T Consensus 299 ~l~--~~~~----------~~fD~Vl~DaPCsg 319 (431)
T PRK14903 299 RLT--EYVQ----------DTFDRILVDAPCTS 319 (431)
T ss_pred hhh--hhhh----------ccCCEEEECCCCCC
Confidence 753 1111 36899999999853
No 98
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.98 E-value=1.4e-09 Score=92.68 Aligned_cols=99 Identities=18% Similarity=0.298 Sum_probs=72.8
Q ss_pred hhccCccccCCHHHHHHHHHHcCC---CCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCe
Q psy17126 26 LKQLSQNFLFEPRLTDKIVRNAGT---ITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPV 101 (240)
Q Consensus 26 ~k~~gQ~fl~d~~i~~~iv~~~~~---~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v 101 (240)
.+.|.+....+..++..+++.+.. ....+|||||||+|.++..++..++ .+++++|+++.++..++++.. .++
T Consensus 6 ~~~y~~~~~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~ 82 (240)
T TIGR02072 6 AKTYDRHAKIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENV 82 (240)
T ss_pred hhchhHHHHHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCC
Confidence 344444444455666666666543 3347899999999999999998763 579999999999998886543 478
Q ss_pred EEEEcccccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126 102 HFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 102 ~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY 140 (240)
+++.+|+.+.++.+ +++|+|+++...
T Consensus 83 ~~~~~d~~~~~~~~-------------~~fD~vi~~~~l 108 (240)
T TIGR02072 83 QFICGDAEKLPLED-------------SSFDLIVSNLAL 108 (240)
T ss_pred eEEecchhhCCCCC-------------CceeEEEEhhhh
Confidence 99999998766432 357888888664
No 99
>PRK06202 hypothetical protein; Provisional
Probab=98.98 E-value=3.7e-09 Score=91.07 Aligned_cols=92 Identities=11% Similarity=0.108 Sum_probs=65.6
Q ss_pred CCCCCCEEEEECCchhHHHHHHHhh----C-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhc
Q psy17126 48 GTITGNEVCEVGPGPGSITRSILNR----R-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRR 122 (240)
Q Consensus 48 ~~~~~~~VLEIG~GtG~lt~~La~~----~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~ 122 (240)
...++.+|||||||+|.++..|+.. + ..+|+|+|+++.|++.++++.. ..++++..+++..++..+
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~--~~~~~~~~~~~~~l~~~~------- 127 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR--RPGVTFRQAVSDELVAEG------- 127 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc--cCCCeEEEEecccccccC-------
Confidence 3356789999999999999998753 2 2489999999999999987543 245777777665554321
Q ss_pred ccccCCCCceEEEecCCC-CCCHHHHHHHHHhc
Q psy17126 123 RDWSEGLPGIRIIGNLPF-NVSTPLIIKWIQAI 154 (240)
Q Consensus 123 ~~~~~~~~~~~VvsNlPY-~Iss~il~~ll~~~ 154 (240)
+.+|.|++|.-+ ++..+.+..++..+
T Consensus 128 ------~~fD~V~~~~~lhh~~d~~~~~~l~~~ 154 (232)
T PRK06202 128 ------ERFDVVTSNHFLHHLDDAEVVRLLADS 154 (232)
T ss_pred ------CCccEEEECCeeecCChHHHHHHHHHH
Confidence 468999999774 45555444555444
No 100
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.98 E-value=3.1e-09 Score=100.70 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccc
Q psy17126 35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQ 114 (240)
Q Consensus 35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~ 114 (240)
.+......+++.+...++.+|||||||+|.+|..+++.+ .+|+|+|+++.|++.+++.. ....+++++++|+.+.+++
T Consensus 21 ~~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~ 98 (475)
T PLN02336 21 LDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDLN 98 (475)
T ss_pred cCchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh-ccCCceEEEEecccccccC
Confidence 344456778888877778899999999999999999984 79999999999998776532 2236799999999753322
Q ss_pred ccchhhhcccccCCCCceEEEecCCCC-CCHHHHHHHHH
Q psy17126 115 NMFSEDRRRDWSEGLPGIRIIGNLPFN-VSTPLIIKWIQ 152 (240)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~VvsNlPY~-Iss~il~~ll~ 152 (240)
++ .+++|.|+++.+++ ++.+.+..++.
T Consensus 99 --~~---------~~~fD~I~~~~~l~~l~~~~~~~~l~ 126 (475)
T PLN02336 99 --IS---------DGSVDLIFSNWLLMYLSDKEVENLAE 126 (475)
T ss_pred --CC---------CCCEEEEehhhhHHhCCHHHHHHHHH
Confidence 11 14689999998854 45443444443
No 101
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.98 E-value=3.9e-09 Score=91.29 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=54.3
Q ss_pred CCCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccc
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTM 113 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~ 113 (240)
.++.+|||||||+|.++..++++. ..+|+|+|+++.|++.+++++.... .+++++++|+.++++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 120 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI 120 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC
Confidence 467899999999999999998852 3689999999999999998765432 579999999998764
No 102
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.98 E-value=2.4e-09 Score=100.98 Aligned_cols=91 Identities=13% Similarity=0.126 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccc
Q psy17126 39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQN 115 (240)
Q Consensus 39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~ 115 (240)
....++..+.+.++.+|||+|||+|..|..+++.. .++|+|+|+++.+++.++++++..+ .+++++++|+.++. ..
T Consensus 238 ~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~ 316 (444)
T PRK14902 238 SSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH-EK 316 (444)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc-ch
Confidence 34455566777889999999999999999999863 4799999999999999999887655 56999999998752 11
Q ss_pred cchhhhcccccCCCCceEEEecCCCC
Q psy17126 116 MFSEDRRRDWSEGLPGIRIIGNLPFN 141 (240)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~VvsNlPY~ 141 (240)
+. +.+|.|+.|+|+.
T Consensus 317 -~~----------~~fD~Vl~D~Pcs 331 (444)
T PRK14902 317 -FA----------EKFDKILVDAPCS 331 (444)
T ss_pred -hc----------ccCCEEEEcCCCC
Confidence 11 2589999999975
No 103
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.97 E-value=3.6e-09 Score=95.64 Aligned_cols=103 Identities=13% Similarity=0.164 Sum_probs=74.3
Q ss_pred ccCccccCCHHHHHH-----HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc--CCCC
Q psy17126 28 QLSQNFLFEPRLTDK-----IVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA--SPCP 100 (240)
Q Consensus 28 ~~gQ~fl~d~~i~~~-----iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~--~~~~ 100 (240)
.+.| +.++..+... ++..+...++++|||||||+|.++..++..++..|+|||+++.|+..++..... ...+
T Consensus 94 ~l~~-~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~ 172 (314)
T TIGR00452 94 ELSG-IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKR 172 (314)
T ss_pred cccc-ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCC
Confidence 3445 6678777544 445556677899999999999999999988766899999999998765432221 1257
Q ss_pred eEEEEcccccccccccchhhhcccccCCCCceEEEecCC-CCCCHH
Q psy17126 101 VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTP 145 (240)
Q Consensus 101 v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~ 145 (240)
+.++.+++.+++.. ..||.|+++-- |++.+|
T Consensus 173 v~~~~~~ie~lp~~--------------~~FD~V~s~gvL~H~~dp 204 (314)
T TIGR00452 173 AILEPLGIEQLHEL--------------YAFDTVFSMGVLYHRKSP 204 (314)
T ss_pred eEEEECCHHHCCCC--------------CCcCEEEEcchhhccCCH
Confidence 88888888776532 25788888743 556665
No 104
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.97 E-value=1.7e-09 Score=107.32 Aligned_cols=98 Identities=7% Similarity=0.060 Sum_probs=75.1
Q ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEcccc
Q psy17126 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVM 109 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~ 109 (240)
|..|....+..+... .++.+|||+|||||.++..++..++.+|++||+|+.+++.++++++..+ .+++++++|+.
T Consensus 522 ~flDqr~~R~~~~~~--~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~ 599 (702)
T PRK11783 522 LFLDHRPTRRMIGQM--AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL 599 (702)
T ss_pred ECHHHHHHHHHHHHh--cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence 455555555555443 2578999999999999999998766689999999999999999886543 47999999997
Q ss_pred cccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126 110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST 144 (240)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss 144 (240)
++ +... +.+||.||.||||...+
T Consensus 600 ~~-l~~~-----------~~~fDlIilDPP~f~~~ 622 (702)
T PRK11783 600 AW-LKEA-----------REQFDLIFIDPPTFSNS 622 (702)
T ss_pred HH-HHHc-----------CCCcCEEEECCCCCCCC
Confidence 63 1111 14689999999997654
No 105
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.97 E-value=7.1e-09 Score=88.44 Aligned_cols=89 Identities=12% Similarity=0.119 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhc--CCCCeEEEEcccccc
Q psy17126 36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQA--SPCPVHFHLGDVMSF 111 (240)
Q Consensus 36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~--~~~~v~vi~~D~~~~ 111 (240)
.......++..+...++.+|||+|||+|.++..++..++ .+|+++|+++.+++.++++... ...+++++.+|+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 36 HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 455667778877777788999999999999999998763 7999999999999999987644 235789999999876
Q ss_pred cccccchhhhcccccCCCCceEEEec
Q psy17126 112 TMQNMFSEDRRRDWSEGLPGIRIIGN 137 (240)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~VvsN 137 (240)
++.. +.+|.|+++
T Consensus 116 ~~~~-------------~~~D~I~~~ 128 (239)
T PRK00216 116 PFPD-------------NSFDAVTIA 128 (239)
T ss_pred CCCC-------------CCccEEEEe
Confidence 5321 357777764
No 106
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.96 E-value=2.1e-09 Score=90.10 Aligned_cols=109 Identities=15% Similarity=0.233 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHcCC--CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126 35 FEPRLTDKIVRNAGT--ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS 110 (240)
Q Consensus 35 ~d~~i~~~iv~~~~~--~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~ 110 (240)
+...+.+.+...+.. -++.+|||+-||||+++...+++++.+|+.||.|+..+..+++|++..+ ++++++.+|+..
T Consensus 24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~ 103 (183)
T PF03602_consen 24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK 103 (183)
T ss_dssp SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH
T ss_pred CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH
Confidence 344566666666654 3789999999999999999999998999999999999999999987654 469999999865
Q ss_pred ccccccchhhhcccccCCCCceEEEecCCCCCCH--HHHHHHHH
Q psy17126 111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST--PLIIKWIQ 152 (240)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss--~il~~ll~ 152 (240)
. +..... ...++|+|+..|||.... +.+...+.
T Consensus 104 ~-l~~~~~--------~~~~fDiIflDPPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 104 F-LLKLAK--------KGEKFDIIFLDPPYAKGLYYEELLELLA 138 (183)
T ss_dssp H-HHHHHH--------CTS-EEEEEE--STTSCHHHHHHHHHHH
T ss_pred H-HHhhcc--------cCCCceEEEECCCcccchHHHHHHHHHH
Confidence 4 222110 124789999999999875 43444444
No 107
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.96 E-value=3.3e-09 Score=96.21 Aligned_cols=92 Identities=15% Similarity=0.202 Sum_probs=68.4
Q ss_pred HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccccccccch
Q psy17126 41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNMFS 118 (240)
Q Consensus 41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~~~~ 118 (240)
+.+...++...+.+|||||||+|.++..++..++..|+|||+++.|+..++...... ..+++++.+|+.++++.
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~---- 187 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL---- 187 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCc----
Confidence 344556665678999999999999999999987668999999999987654432221 35799999999887652
Q ss_pred hhhcccccCCCCceEEEec-CCCCCCHHH
Q psy17126 119 EDRRRDWSEGLPGIRIIGN-LPFNVSTPL 146 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~VvsN-lPY~Iss~i 146 (240)
+.||.|+++ .=|++.+|.
T Consensus 188 ----------~~FD~V~s~~vl~H~~dp~ 206 (322)
T PRK15068 188 ----------KAFDTVFSMGVLYHRRSPL 206 (322)
T ss_pred ----------CCcCEEEECChhhccCCHH
Confidence 357888875 346666553
No 108
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.95 E-value=7.1e-09 Score=96.20 Aligned_cols=83 Identities=19% Similarity=0.137 Sum_probs=67.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126 39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS 118 (240)
Q Consensus 39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~ 118 (240)
..+.+++.+++.++.+|||||||+|.++..+++....+|+|+|+|+.|++.++++... .++++..+|+.+++
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--l~v~~~~~D~~~l~------ 226 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--LPVEIRLQDYRDLN------ 226 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--CeEEEEECchhhcC------
Confidence 3456778888889999999999999999999987546999999999999999987643 35788888876531
Q ss_pred hhhcccccCCCCceEEEecCC
Q psy17126 119 EDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~VvsNlP 139 (240)
+++|.|+++..
T Consensus 227 ----------~~fD~Ivs~~~ 237 (383)
T PRK11705 227 ----------GQFDRIVSVGM 237 (383)
T ss_pred ----------CCCCEEEEeCc
Confidence 35788888754
No 109
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.95 E-value=5.8e-09 Score=94.38 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCC---CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC------CCCeEEEEccc
Q psy17126 38 RLTDKIVRNAGT---ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS------PCPVHFHLGDV 108 (240)
Q Consensus 38 ~i~~~iv~~~~~---~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~------~~~v~vi~~D~ 108 (240)
.+++.+++.+.. .++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++.... ..++++..+|+
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 345666666643 257899999999999999999985 69999999999999999876542 13567777886
Q ss_pred cc
Q psy17126 109 MS 110 (240)
Q Consensus 109 ~~ 110 (240)
..
T Consensus 207 ~~ 208 (315)
T PLN02585 207 ES 208 (315)
T ss_pred hh
Confidence 54
No 110
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.94 E-value=4.8e-09 Score=92.38 Aligned_cols=83 Identities=22% Similarity=0.297 Sum_probs=66.0
Q ss_pred cCCCCCCEEEEECCchhHHHHHHHhhC-C-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcc
Q psy17126 47 AGTITGNEVCEVGPGPGSITRSILNRR-P-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRR 123 (240)
Q Consensus 47 ~~~~~~~~VLEIG~GtG~lt~~La~~~-~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~ 123 (240)
..+.++++|||||||+|..+..+++.. . .+|+|+|+++.|++.++++....+ ++++++.+|+.++++++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~-------- 144 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD-------- 144 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC--------
Confidence 456789999999999999888777652 2 479999999999999998765543 68999999998876432
Q ss_pred cccCCCCceEEEecCCCCC
Q psy17126 124 DWSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 124 ~~~~~~~~~~VvsNlPY~I 142 (240)
+.+|.|++|.-++.
T Consensus 145 -----~~fD~Vi~~~v~~~ 158 (272)
T PRK11873 145 -----NSVDVIISNCVINL 158 (272)
T ss_pred -----CceeEEEEcCcccC
Confidence 36899999875543
No 111
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.94 E-value=3.6e-09 Score=97.41 Aligned_cols=116 Identities=15% Similarity=0.048 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHH----cCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccc
Q psy17126 35 FEPRLTDKIVRN----AGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVM 109 (240)
Q Consensus 35 ~d~~i~~~iv~~----~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~ 109 (240)
+++.+.+.+++. +... +.+|||++||+|.++..+++. ..+|+|||+++.+++.+++++...+ .|++++.+|+.
T Consensus 187 ~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~ 264 (362)
T PRK05031 187 PNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAE 264 (362)
T ss_pred cCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 455555555544 3322 357999999999999999886 4799999999999999999876544 58999999997
Q ss_pred cccccccchhhh-c-cccc--CCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126 110 SFTMQNMFSEDR-R-RDWS--EGLPGIRIIGNLPFNVSTPLIIKWIQA 153 (240)
Q Consensus 110 ~~~~~~~~~~~~-~-~~~~--~~~~~~~VvsNlPY~Iss~il~~ll~~ 153 (240)
++ ++.+..... . ..+. ...++|+||.+||+.-..+.+.+++..
T Consensus 265 ~~-l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~ 311 (362)
T PRK05031 265 EF-TQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA 311 (362)
T ss_pred HH-HHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc
Confidence 74 222110000 0 0000 012479999999986545555555544
No 112
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.94 E-value=2.4e-09 Score=97.13 Aligned_cols=75 Identities=8% Similarity=0.100 Sum_probs=60.1
Q ss_pred CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccccccccchhhhcccccC
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~ 127 (240)
.++.+|||||||+|.++..+++.+ .+|+|||+++.|++.++.+.... ..+++++++|+.++++.+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~------------ 196 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG------------ 196 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc------------
Confidence 356799999999999999999874 69999999999999998765432 247999999998765422
Q ss_pred CCCceEEEecC
Q psy17126 128 GLPGIRIIGNL 138 (240)
Q Consensus 128 ~~~~~~VvsNl 138 (240)
++||+|++.-
T Consensus 197 -~~FD~Vi~~~ 206 (322)
T PLN02396 197 -RKFDAVLSLE 206 (322)
T ss_pred -CCCCEEEEhh
Confidence 3678888753
No 113
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.94 E-value=3.1e-09 Score=89.53 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=69.0
Q ss_pred HcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccc
Q psy17126 46 NAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125 (240)
Q Consensus 46 ~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~ 125 (240)
.++-....++||+|||.|.||..|+.+ +.+++++|+++..++.++++.... ++|+++++|+.+....
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~~P~----------- 104 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL-PHVEWIQADVPEFWPE----------- 104 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT---S-----------
T ss_pred hcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC-CCeEEEECcCCCCCCC-----------
Confidence 466667789999999999999999999 589999999999999999987654 7899999999764322
Q ss_pred cCCCCce-EEEecCCCCCCH-HHHHHHHHhcc
Q psy17126 126 SEGLPGI-RIIGNLPFNVST-PLIIKWIQAIS 155 (240)
Q Consensus 126 ~~~~~~~-~VvsNlPY~Iss-~il~~ll~~~~ 155 (240)
++|| +|+|-+=||++. ..+..++....
T Consensus 105 ---~~FDLIV~SEVlYYL~~~~~L~~~l~~l~ 133 (201)
T PF05401_consen 105 ---GRFDLIVLSEVLYYLDDAEDLRAALDRLV 133 (201)
T ss_dssp ---S-EEEEEEES-GGGSSSHHHHHHHHHHHH
T ss_pred ---CCeeEEEEehHhHcCCCHHHHHHHHHHHH
Confidence 3455 578888999985 56666665543
No 114
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.92 E-value=4.9e-09 Score=98.65 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=77.2
Q ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccc
Q psy17126 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVM 109 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~ 109 (240)
|.++......++..+.+.++++|||+|||+|..|..++... .++|+|+|+++.+++.++++++..+ .+++++++|+.
T Consensus 234 ~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~ 313 (434)
T PRK14901 234 WTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR 313 (434)
T ss_pred EEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh
Confidence 34444445556666788889999999999999999999863 3689999999999999999887765 57999999998
Q ss_pred cccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126 110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I 142 (240)
++.-.... + .+.+|.|+.+.|.+-
T Consensus 314 ~~~~~~~~-------~--~~~fD~Vl~DaPCSg 337 (434)
T PRK14901 314 NLLELKPQ-------W--RGYFDRILLDAPCSG 337 (434)
T ss_pred hccccccc-------c--cccCCEEEEeCCCCc
Confidence 75311000 0 136899999999653
No 115
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.92 E-value=1.8e-09 Score=93.24 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=64.8
Q ss_pred cCCHHHHHHHHHHcCC---CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccc
Q psy17126 34 LFEPRLTDKIVRNAGT---ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMS 110 (240)
Q Consensus 34 l~d~~i~~~iv~~~~~---~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~ 110 (240)
.+++.-...|.+.+.. .++.+|||||||-|.|+.++|+.+ ..|+|+|+++.+++.++..+.+.+-++...+..+++
T Consensus 39 ~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~ed 117 (243)
T COG2227 39 KINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVED 117 (243)
T ss_pred eeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccccccchhhhHHH
Confidence 4455445555555442 478999999999999999999996 799999999999999998765543334455555554
Q ss_pred ccccccchhhhcccccCCCCceEEEec
Q psy17126 111 FTMQNMFSEDRRRDWSEGLPGIRIIGN 137 (240)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~VvsN 137 (240)
+... +++||+|+++
T Consensus 118 l~~~-------------~~~FDvV~cm 131 (243)
T COG2227 118 LASA-------------GGQFDVVTCM 131 (243)
T ss_pred HHhc-------------CCCccEEEEh
Confidence 3211 1478988874
No 116
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.91 E-value=6.4e-09 Score=94.32 Aligned_cols=114 Identities=17% Similarity=0.089 Sum_probs=93.5
Q ss_pred HHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC
Q psy17126 18 IKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS 97 (240)
Q Consensus 18 ~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~ 97 (240)
++.+....+.-+ +---++|.++..++..+.+++|+.|||.=||||++...+.-.| .+|+|.|+|.+|+.-++.|++.+
T Consensus 165 ~~~r~~~kRPf~-~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G-~~viG~Did~~mv~gak~Nl~~y 242 (347)
T COG1041 165 FEKRDPEKRPFF-RPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKINLEYY 242 (347)
T ss_pred HhhcCcccCCcc-CcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcC-ceEeecchHHHHHhhhhhhhhhh
Confidence 444443333333 3367799999999999999999999999999999999998875 79999999999999999999877
Q ss_pred C-CCeEEEEc-ccccccccccchhhhcccccCCCCceEEEecCCCCCCHHH
Q psy17126 98 P-CPVHFHLG-DVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPL 146 (240)
Q Consensus 98 ~-~~v~vi~~-D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~i 146 (240)
+ ..+.++.. |+.++++++ ..+|.|+..|||.+++.+
T Consensus 243 ~i~~~~~~~~~Da~~lpl~~-------------~~vdaIatDPPYGrst~~ 280 (347)
T COG1041 243 GIEDYPVLKVLDATNLPLRD-------------NSVDAIATDPPYGRSTKI 280 (347)
T ss_pred CcCceeEEEecccccCCCCC-------------CccceEEecCCCCccccc
Confidence 5 56777777 999998654 247999999999998843
No 117
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=6.6e-09 Score=98.08 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=71.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccccc
Q psy17126 40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNM 116 (240)
Q Consensus 40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~ 116 (240)
....+..+.+.++++|||+|||+|..|..+++.. .++|+|+|+++.+++.++++++..+ .+++++++|+.++.. .
T Consensus 239 s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~-~- 316 (445)
T PRK14904 239 QALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP-E- 316 (445)
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc-C-
Confidence 3344556677789999999999999999988753 3699999999999999999887655 579999999987531 1
Q ss_pred chhhhcccccCCCCceEEEecCCCCCC
Q psy17126 117 FSEDRRRDWSEGLPGIRIIGNLPFNVS 143 (240)
Q Consensus 117 ~~~~~~~~~~~~~~~~~VvsNlPY~Is 143 (240)
.++|.|+.++|+.-+
T Consensus 317 ------------~~fD~Vl~D~Pcsg~ 331 (445)
T PRK14904 317 ------------EQPDAILLDAPCTGT 331 (445)
T ss_pred ------------CCCCEEEEcCCCCCc
Confidence 358999999997443
No 118
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.90 E-value=6e-09 Score=95.69 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccccccc
Q psy17126 38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNM 116 (240)
Q Consensus 38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~ 116 (240)
.+++.+++.+...+ .+|||+|||+|.++..|+.. +.+|+|||+++.+++.+++++...+ .+++++.+|+.++- +..
T Consensus 185 ~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~-~~~ 261 (353)
T TIGR02143 185 KMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT-QAM 261 (353)
T ss_pred HHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH-HHH
Confidence 34455555554333 47999999999999999887 4799999999999999999876544 57999999997742 211
Q ss_pred chhhhccccc--C-----CCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126 117 FSEDRRRDWS--E-----GLPGIRIIGNLPFNVSTPLIIKWIQA 153 (240)
Q Consensus 117 ~~~~~~~~~~--~-----~~~~~~VvsNlPY~Iss~il~~ll~~ 153 (240)
.. ...|. . ...+|.|+-+||..-..+.+.+++..
T Consensus 262 ~~---~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~ 302 (353)
T TIGR02143 262 NG---VREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA 302 (353)
T ss_pred hh---ccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc
Confidence 00 00010 0 01369999999976555666666654
No 119
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.89 E-value=1e-08 Score=101.96 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=80.1
Q ss_pred ccCCHHHHHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhC--------------------------------------
Q psy17126 33 FLFEPRLTDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRR-------------------------------------- 73 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~-------------------------------------- 73 (240)
..+.+.++..|+..+++ .++..++|.+||+|++.+..+...
T Consensus 171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 45778899999999988 678999999999999998876531
Q ss_pred -----CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126 74 -----PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143 (240)
Q Consensus 74 -----~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is 143 (240)
..+++|+|+|+.+++.++.|+...+ +.++++++|+.++..+.. .+.+|.||+||||...
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~-----------~~~~d~IvtNPPYg~r 316 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP-----------KGPTGLVISNPPYGER 316 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc-----------cCCCCEEEECCCCcCc
Confidence 1269999999999999999987654 568999999988653220 1357999999999643
No 120
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.89 E-value=1.3e-08 Score=89.06 Aligned_cols=48 Identities=19% Similarity=0.333 Sum_probs=42.1
Q ss_pred CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc
Q psy17126 49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA 96 (240)
Q Consensus 49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~ 96 (240)
..++.+|||+|||+|.++..+++.++.+|+|+|+|+.+++.++++...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~ 164 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL 164 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 357899999999999999988887656799999999999999988754
No 121
>PRK06922 hypothetical protein; Provisional
Probab=98.89 E-value=6.3e-09 Score=101.36 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=64.9
Q ss_pred cCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccc
Q psy17126 47 AGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125 (240)
Q Consensus 47 ~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~ 125 (240)
+...++.+|||||||+|.++..++... ..+|+|+|+++.|++.++++....+.+++++++|+.+++ ..++.
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp--~~fed------ 485 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLS--SSFEK------ 485 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCc--cccCC------
Confidence 344568899999999999999998764 369999999999999998876544467889999998754 21211
Q ss_pred cCCCCceEEEecCCC
Q psy17126 126 SEGLPGIRIIGNLPF 140 (240)
Q Consensus 126 ~~~~~~~~VvsNlPY 140 (240)
+++|.|++|.++
T Consensus 486 ---eSFDvVVsn~vL 497 (677)
T PRK06922 486 ---ESVDTIVYSSIL 497 (677)
T ss_pred ---CCEEEEEEchHH
Confidence 468999998764
No 122
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.88 E-value=2.7e-08 Score=89.20 Aligned_cols=100 Identities=12% Similarity=0.126 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccc
Q psy17126 39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQN 115 (240)
Q Consensus 39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~ 115 (240)
+...+++.+...++.+|||||||+|.++..++++.+ .+++++|. +.+++.+++++...+ ++++++.+|+.+.+++.
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~ 215 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE 215 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC
Confidence 455677777778889999999999999999999864 68999998 789999988766543 68999999998754432
Q ss_pred cchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126 116 MFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQA 153 (240)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~ 153 (240)
...+++++..+....+...+++.+
T Consensus 216 --------------~D~v~~~~~lh~~~~~~~~~il~~ 239 (306)
T TIGR02716 216 --------------ADAVLFCRILYSANEQLSTIMCKK 239 (306)
T ss_pred --------------CCEEEeEhhhhcCChHHHHHHHHH
Confidence 123467887776665544444443
No 123
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.87 E-value=1.6e-08 Score=88.47 Aligned_cols=95 Identities=18% Similarity=0.134 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126 35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS 110 (240)
Q Consensus 35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~ 110 (240)
+-+.-+..|+..+++.||++|||.|.|+|+||..|+... .++|+.+|+.++.++.|+++++..+ +++++.++|+.+
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 445667789999999999999999999999999999753 3799999999999999999887654 689999999976
Q ss_pred ccccccchhhhcccccCCCCceEEEecCC
Q psy17126 111 FTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~VvsNlP 139 (240)
-.+..-. ...+|.|+-.||
T Consensus 104 ~g~~~~~----------~~~~DavfLDlp 122 (247)
T PF08704_consen 104 EGFDEEL----------ESDFDAVFLDLP 122 (247)
T ss_dssp G--STT-----------TTSEEEEEEESS
T ss_pred ccccccc----------cCcccEEEEeCC
Confidence 4442211 135799999998
No 124
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.87 E-value=1.6e-08 Score=85.29 Aligned_cols=90 Identities=12% Similarity=0.211 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc
Q psy17126 36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM 113 (240)
Q Consensus 36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~ 113 (240)
+......+++.+...++.+|||+|||+|.++..+++..+ .+++++|+++.+++.++++.. ...+++++.+|+.+.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~ 102 (223)
T TIGR01934 24 HRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPF 102 (223)
T ss_pred HHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCC
Confidence 355666777777777889999999999999999998764 489999999999999987654 34679999999988653
Q ss_pred cccchhhhcccccCCCCceEEEecCC
Q psy17126 114 QNMFSEDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~VvsNlP 139 (240)
.. +++|.|+++.-
T Consensus 103 ~~-------------~~~D~i~~~~~ 115 (223)
T TIGR01934 103 ED-------------NSFDAVTIAFG 115 (223)
T ss_pred CC-------------CcEEEEEEeee
Confidence 21 35788877643
No 125
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.86 E-value=1.2e-08 Score=94.43 Aligned_cols=87 Identities=11% Similarity=0.028 Sum_probs=67.5
Q ss_pred HHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhh
Q psy17126 43 IVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSED 120 (240)
Q Consensus 43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~ 120 (240)
+++......+..+||||||+|.++..+|.+.+ ..++|||+++.|+..+.+++...+ .|+.++++|+..+. ..++.
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll--~~~~~- 190 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL--ELLPS- 190 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh--hhCCC-
Confidence 44444555677999999999999999999753 689999999999999988765544 68999999997642 11221
Q ss_pred hcccccCCCCceEEEecCCC
Q psy17126 121 RRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 121 ~~~~~~~~~~~~~VvsNlPY 140 (240)
+.+|.|+.|.|.
T Consensus 191 --------~s~D~I~lnFPd 202 (390)
T PRK14121 191 --------NSVEKIFVHFPV 202 (390)
T ss_pred --------CceeEEEEeCCC
Confidence 467899999874
No 126
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.4e-08 Score=88.46 Aligned_cols=89 Identities=24% Similarity=0.280 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-CC-CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccc
Q psy17126 37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-RP-ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFT 112 (240)
Q Consensus 37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~~-~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~ 112 (240)
|.-+..|+..+++.+|++|+|.|.|+|+||..|+.. ++ ++|+++|+.+++++.|++|++.++ +++++..+|+.+.-
T Consensus 80 PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 80 PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 334667888999999999999999999999999974 33 799999999999999999987654 56999999998754
Q ss_pred ccccchhhhcccccCCCCceEEEecCC
Q psy17126 113 MQNMFSEDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~VvsNlP 139 (240)
.++ .+|+||-.+|
T Consensus 160 ~~~--------------~vDav~LDmp 172 (256)
T COG2519 160 DEE--------------DVDAVFLDLP 172 (256)
T ss_pred ccc--------------ccCEEEEcCC
Confidence 332 4688887776
No 127
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.86 E-value=1.4e-08 Score=89.76 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=57.9
Q ss_pred CCCCEEEEECCchhHHHHHHHhhCC----CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccc
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRRP----ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDW 125 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~~----~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~ 125 (240)
....+|||||||+|.++..++...+ ..|+|+|+|+.|+..++++ .++++++.+|+.++++++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~----~~~~~~~~~d~~~lp~~~---------- 149 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR----YPQVTFCVASSHRLPFAD---------- 149 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh----CCCCeEEEeecccCCCcC----------
Confidence 3557899999999999999987632 3799999999999998753 257899999998877543
Q ss_pred cCCCCceEEEecC
Q psy17126 126 SEGLPGIRIIGNL 138 (240)
Q Consensus 126 ~~~~~~~~VvsNl 138 (240)
+.+|.|+++.
T Consensus 150 ---~sfD~I~~~~ 159 (272)
T PRK11088 150 ---QSLDAIIRIY 159 (272)
T ss_pred ---CceeEEEEec
Confidence 3578888865
No 128
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.86 E-value=1.3e-08 Score=95.52 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEE--EEcccccc
Q psy17126 35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHF--HLGDVMSF 111 (240)
Q Consensus 35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~v--i~~D~~~~ 111 (240)
++..-...++..+++.++.+|||+|||+|..|..++... .++|+|+|+++.++..++++++..+-.+++ +.+|....
T Consensus 222 ~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~ 301 (426)
T TIGR00563 222 VQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP 301 (426)
T ss_pred EECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc
Confidence 333445666777888899999999999999999999864 369999999999999999988765533444 66776543
Q ss_pred cccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126 112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143 (240)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is 143 (240)
.. . ....++|.|+.+.|++-+
T Consensus 302 ~~--~---------~~~~~fD~VllDaPcSg~ 322 (426)
T TIGR00563 302 SQ--W---------AENEQFDRILLDAPCSAT 322 (426)
T ss_pred cc--c---------ccccccCEEEEcCCCCCC
Confidence 21 0 011468999999997644
No 129
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.84 E-value=1.3e-08 Score=93.46 Aligned_cols=97 Identities=18% Similarity=0.105 Sum_probs=81.5
Q ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC------C-------------------------------
Q psy17126 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP------A------------------------------- 75 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~------~------------------------------- 75 (240)
..+.+.++..|+..+++.++..++|.=||+|++.+..|..+. .
T Consensus 173 ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 173 APLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred CCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 567788999999999999999999999999999998887642 0
Q ss_pred ---eEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126 76 ---RLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 76 ---~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I 142 (240)
.++|+|+|+++++.|+.|+...+ +.+++.++|+.++.-+- ..+++||+||||..
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-------------~~~gvvI~NPPYGe 311 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-------------EEYGVVISNPPYGE 311 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC-------------CcCCEEEeCCCcch
Confidence 37899999999999999987665 77999999998864321 24699999999963
No 130
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.84 E-value=1.6e-08 Score=92.38 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=68.5
Q ss_pred HHHHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126 38 RLTDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN 115 (240)
Q Consensus 38 ~i~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~ 115 (240)
.+...+++.+.+ .++.+|||||||+|.++..+++.. ..+|+++|+++.|++.++++.. ..+++++.+|+.++++++
T Consensus 99 ~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp~~~ 176 (340)
T PLN02490 99 DMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLPFPT 176 (340)
T ss_pred HHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCCCCC
Confidence 345556665554 367899999999999999998763 3689999999999999987643 257899999998876542
Q ss_pred cchhhhcccccCCCCceEEEecCCC
Q psy17126 116 MFSEDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~VvsNlPY 140 (240)
+.+|.|+++...
T Consensus 177 -------------~sFDvVIs~~~L 188 (340)
T PLN02490 177 -------------DYADRYVSAGSI 188 (340)
T ss_pred -------------CceeEEEEcChh
Confidence 358999987654
No 131
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.83 E-value=3.7e-08 Score=88.46 Aligned_cols=69 Identities=28% Similarity=0.275 Sum_probs=54.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126 40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS 110 (240)
Q Consensus 40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~ 110 (240)
+..|++.+ .++.+|||+|||||..|..|++.. ..+|+|||+|++|++.+++++.... -++..+++|+.+
T Consensus 54 ~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 54 ADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ 126 (301)
T ss_pred HHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence 34455444 356799999999999999999875 3689999999999999987654322 346778999976
No 132
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.83 E-value=1.8e-08 Score=85.98 Aligned_cols=84 Identities=14% Similarity=0.230 Sum_probs=58.6
Q ss_pred HHHcC-CCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc-cccchh
Q psy17126 44 VRNAG-TITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM-QNMFSE 119 (240)
Q Consensus 44 v~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~-~~~~~~ 119 (240)
.+... +.++.+|||||||||.+|..++++.+ ++|+|||+++ |. . ..+++++++|+.+... ..+...
T Consensus 43 ~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~-~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 43 QQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------P-IVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred HHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------C-CCCcEEEecCCCChHHHHHHHHH
Confidence 33344 46789999999999999999998742 5899999998 21 1 1469999999987541 111110
Q ss_pred hhcccccCCCCceEEEecC-CCCCC
Q psy17126 120 DRRRDWSEGLPGIRIIGNL-PFNVS 143 (240)
Q Consensus 120 ~~~~~~~~~~~~~~VvsNl-PY~Is 143 (240)
+ ..+.+|.|++|+ |+...
T Consensus 113 -----~-~~~~~D~V~S~~~~~~~g 131 (209)
T PRK11188 113 -----V-GDSKVQVVMSDMAPNMSG 131 (209)
T ss_pred -----h-CCCCCCEEecCCCCccCC
Confidence 0 114689999998 54433
No 133
>KOG1540|consensus
Probab=98.79 E-value=3.7e-08 Score=85.85 Aligned_cols=86 Identities=21% Similarity=0.334 Sum_probs=70.5
Q ss_pred hhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-C------CeEEEEeCCcchHHHHHHHHhcCC
Q psy17126 26 LKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-P------ARLVLIEKDPRFTPCLDMLAQASP 98 (240)
Q Consensus 26 ~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~------~~V~avEid~~m~~~l~~~~~~~~ 98 (240)
..++|+| +-+-+..+.++++.++.+|||++||||.+|..+++.. . .+|+.+|+++.|+..+++++.+.+
T Consensus 79 ~mSlGiH----RlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~ 154 (296)
T KOG1540|consen 79 AMSLGIH----RLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP 154 (296)
T ss_pred Hhhcchh----HHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC
Confidence 4567776 3345567788888899999999999999999999863 2 689999999999999988764432
Q ss_pred ----CCeEEEEcccccccccc
Q psy17126 99 ----CPVHFHLGDVMSFTMQN 115 (240)
Q Consensus 99 ----~~v~vi~~D~~~~~~~~ 115 (240)
.++.++.+|++++++++
T Consensus 155 l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 155 LKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCcCCceEEEeCCcccCCCCC
Confidence 45999999999999875
No 134
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.79 E-value=2e-08 Score=84.39 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=59.1
Q ss_pred HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhh
Q psy17126 41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120 (240)
Q Consensus 41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~ 120 (240)
+.|++++ .++.+|||+|||.|.|...|......+.+|||+|++.+..+.+ ..+.|+++|+.+ .+..+ +
T Consensus 5 ~~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~------rGv~Viq~Dld~-gL~~f-~-- 72 (193)
T PF07021_consen 5 QIIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA------RGVSVIQGDLDE-GLADF-P-- 72 (193)
T ss_pred HHHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH------cCCCEEECCHHH-hHhhC-C--
Confidence 3455554 4789999999999999999988545799999999998766543 347899999986 34332 1
Q ss_pred hcccccCCCCceEEEecC
Q psy17126 121 RRRDWSEGLPGIRIIGNL 138 (240)
Q Consensus 121 ~~~~~~~~~~~~~VvsNl 138 (240)
.++||.||-+-
T Consensus 73 -------d~sFD~VIlsq 83 (193)
T PF07021_consen 73 -------DQSFDYVILSQ 83 (193)
T ss_pred -------CCCccEEehHh
Confidence 15789888653
No 135
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.78 E-value=2.3e-08 Score=89.65 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
+-|-+++.+++.+.+.++..++|.+||.|..|..+++..+ ++|+|+|.|+.+++.+++++.. .++++++++|+.++.
T Consensus 3 H~pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 3 HIPVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLK 81 (296)
T ss_pred CccccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHH
Confidence 4567888999999988999999999999999999999853 7999999999999999987655 578999999998863
No 136
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.78 E-value=2.3e-08 Score=83.92 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=59.6
Q ss_pred HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhh
Q psy17126 41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSED 120 (240)
Q Consensus 41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~ 120 (240)
+.+.+.+ .++.+|||||||+|.++..++......++|+|+++.|+..+++ .+++++++|+.+. +.. ++
T Consensus 5 ~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~------~~~~~~~~d~~~~-l~~-~~-- 72 (194)
T TIGR02081 5 ESILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA------RGVNVIQGDLDEG-LEA-FP-- 72 (194)
T ss_pred HHHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH------cCCeEEEEEhhhc-ccc-cC--
Confidence 3455544 3678999999999999999987644688999999999988763 3578899998652 111 11
Q ss_pred hcccccCCCCceEEEecCCC
Q psy17126 121 RRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 121 ~~~~~~~~~~~~~VvsNlPY 140 (240)
.+++|.|++|.++
T Consensus 73 -------~~sfD~Vi~~~~l 85 (194)
T TIGR02081 73 -------DKSFDYVILSQTL 85 (194)
T ss_pred -------CCCcCEEEEhhHh
Confidence 1468999999774
No 137
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.77 E-value=6.7e-08 Score=83.88 Aligned_cols=98 Identities=9% Similarity=-0.029 Sum_probs=71.4
Q ss_pred cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126 34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM 109 (240)
Q Consensus 34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~ 109 (240)
.+.+.....+.-.+...+..+|||||||+|.-+..++... .++|+++|+|+.+++.++++++..+ ++++++++|+.
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 4566554444444555667899999999999888888753 3799999999999999999877654 68999999998
Q ss_pred cccccccchhhhcccccCCCCceEEEecC
Q psy17126 110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138 (240)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNl 138 (240)
+. ++.+.+. ...++||.|+.+.
T Consensus 131 ~~-L~~l~~~------~~~~~fD~VfiDa 152 (234)
T PLN02781 131 SA-LDQLLNN------DPKPEFDFAFVDA 152 (234)
T ss_pred HH-HHHHHhC------CCCCCCCEEEECC
Confidence 74 2222110 0014689999875
No 138
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=3e-08 Score=93.26 Aligned_cols=120 Identities=19% Similarity=0.222 Sum_probs=90.6
Q ss_pred cCCHHHHHHHH----HHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccc
Q psy17126 34 LFEPRLTDKIV----RNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDV 108 (240)
Q Consensus 34 l~d~~i~~~iv----~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~ 108 (240)
-+++.+.++|. ++++..++++|||+=||.|.+|..||++ ..+|+|+|+++.+++.++++++..+ .|++++.+|+
T Consensus 272 Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~a 350 (432)
T COG2265 272 QVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDA 350 (432)
T ss_pred ecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCH
Confidence 34555555554 5566778899999999999999999987 4899999999999999999987765 6799999999
Q ss_pred ccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc-----cccccchh
Q psy17126 109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE-----NLLFPKHK 164 (240)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~-----~~~~~~~~ 164 (240)
.++... |..+..+|.||-+||-.=..+.+.+.+.+... ..|.+.-+
T Consensus 351 e~~~~~----------~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~Tl 401 (432)
T COG2265 351 EEFTPA----------WWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATL 401 (432)
T ss_pred HHHhhh----------ccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHH
Confidence 886422 21224679999999987666555566555443 45665444
No 139
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.74 E-value=2.7e-08 Score=91.35 Aligned_cols=131 Identities=16% Similarity=0.152 Sum_probs=78.5
Q ss_pred ccccCCHHHHHH----HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEE
Q psy17126 31 QNFLFEPRLTDK----IVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHL 105 (240)
Q Consensus 31 Q~fl~d~~i~~~----iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~ 105 (240)
--|-+++.+..+ ++++++..++ .|||+-||+|.+|.+|+.. ..+|+|||+++.+++.|++++...+ .|++++.
T Consensus 173 sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~ 250 (352)
T PF05958_consen 173 SFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIR 250 (352)
T ss_dssp S---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE
T ss_pred cCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEE
Confidence 334455555544 4555666555 8999999999999999998 4799999999999999999887655 7899999
Q ss_pred ccccccccc--c--cchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc---cccccchh
Q psy17126 106 GDVMSFTMQ--N--MFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE---NLLFPKHK 164 (240)
Q Consensus 106 ~D~~~~~~~--~--~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~---~~~~~~~~ 164 (240)
+++.++.-. . .+.......+. ...+|.||-.||-.-..+.+.+++.+... ..|.+.-+
T Consensus 251 ~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~tl 315 (352)
T PF05958_consen 251 GDAEDFAKALAKAREFNRLKGIDLK-SFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPATL 315 (352)
T ss_dssp --SHHCCCHHCCS-GGTTGGGS-GG-CTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHHH
T ss_pred eeccchhHHHHhhHHHHhhhhhhhh-hcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHHH
Confidence 988765211 0 00000000011 12578999999987777766677665443 45665443
No 140
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.73 E-value=4.1e-08 Score=83.71 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=50.7
Q ss_pred CEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEccccccc
Q psy17126 53 NEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFT 112 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~ 112 (240)
++|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++.... .++++++.+|+.+.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~ 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC
Confidence 379999999999999999875 368999999999999999876543 367899999987654
No 141
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.73 E-value=2e-08 Score=82.60 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=57.4
Q ss_pred CEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126 53 NEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~ 130 (240)
..|+|+.||.|.-|..+|+.. .+|+|||+|+..++.++.|++-++ ++++++++|+.++- ..+... ..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~-~~~~~~---------~~ 69 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL-KRLKSN---------KI 69 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG-GGB--------------
T ss_pred CEEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH-hhcccc---------cc
Confidence 369999999999999999984 799999999999999999998775 68999999998852 121100 12
Q ss_pred ceEEEecCCCCCC
Q psy17126 131 GIRIIGNLPFNVS 143 (240)
Q Consensus 131 ~~~VvsNlPY~Is 143 (240)
+|.|+.+|||.-.
T Consensus 70 ~D~vFlSPPWGGp 82 (163)
T PF09445_consen 70 FDVVFLSPPWGGP 82 (163)
T ss_dssp -SEEEE---BSSG
T ss_pred ccEEEECCCCCCc
Confidence 6899999998643
No 142
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.73 E-value=9.1e-08 Score=69.04 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=59.9
Q ss_pred EEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-CCCCeEEEEcccccccccccchhhhcccccCCCCce
Q psy17126 54 EVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-SPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132 (240)
Q Consensus 54 ~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (240)
+|+|+|||+|.++..++.....+++++|+++.++..+++.... ...+++++.+|+.+..... .+++|
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~d 68 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEA------------DESFD 68 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcccc------------CCceE
Confidence 4899999999999999984357999999999999988743222 2367899999998764311 14689
Q ss_pred EEEecCCCCC
Q psy17126 133 RIIGNLPFNV 142 (240)
Q Consensus 133 ~VvsNlPY~I 142 (240)
.|+.|.|+..
T Consensus 69 ~i~~~~~~~~ 78 (107)
T cd02440 69 VIISDPPLHH 78 (107)
T ss_pred EEEEccceee
Confidence 9999999765
No 143
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.73 E-value=7.2e-08 Score=80.78 Aligned_cols=96 Identities=20% Similarity=0.259 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCC--CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccccc
Q psy17126 37 PRLTDKIVRNAGT--ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFT 112 (240)
Q Consensus 37 ~~i~~~iv~~~~~--~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~ 112 (240)
..+-+.+-.++.. -.|.++||+=+|||+++...+++++.+++.||.|...+..+++|.+..+ .+.+++..|+...
T Consensus 27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~- 105 (187)
T COG0742 27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRA- 105 (187)
T ss_pred hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHH-
Confidence 3455666666654 4789999999999999999999998999999999999999999988776 8899999999832
Q ss_pred ccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126 113 MQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I 142 (240)
++..-. ..+||.|+..|||+-
T Consensus 106 L~~~~~---------~~~FDlVflDPPy~~ 126 (187)
T COG0742 106 LKQLGT---------REPFDLVFLDPPYAK 126 (187)
T ss_pred HHhcCC---------CCcccEEEeCCCCcc
Confidence 222211 124899999999983
No 144
>PRK04148 hypothetical protein; Provisional
Probab=98.72 E-value=7.7e-08 Score=76.62 Aligned_cols=89 Identities=11% Similarity=0.158 Sum_probs=65.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCchhH-HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126 39 LTDKIVRNAGTITGNEVCEVGPGPGS-ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF 117 (240)
Q Consensus 39 i~~~iv~~~~~~~~~~VLEIG~GtG~-lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~ 117 (240)
+.+.|.+.+...++.+|+|||||+|. ++..|++.+ ..|+|+|+++..++.++++ .++++.+|+.+-+++-.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~~~y- 75 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKL------GLNAFVDDLFNPNLEIY- 75 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHh------CCeEEECcCCCCCHHHH-
Confidence 55666666665567899999999996 999998875 7999999999998887652 37899999998765421
Q ss_pred hhhhcccccCCCCceEEEe-cCCCCCCHHH
Q psy17126 118 SEDRRRDWSEGLPGIRIIG-NLPFNVSTPL 146 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~Vvs-NlPY~Iss~i 146 (240)
...+.|.| +||.-+-.|+
T Consensus 76 -----------~~a~liysirpp~el~~~~ 94 (134)
T PRK04148 76 -----------KNAKLIYSIRPPRDLQPFI 94 (134)
T ss_pred -----------hcCCEEEEeCCCHHHHHHH
Confidence 23567766 5555444444
No 145
>KOG1270|consensus
Probab=98.71 E-value=2.5e-08 Score=87.11 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=39.3
Q ss_pred CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh
Q psy17126 52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ 95 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~ 95 (240)
|.+|||+|||+|-|+.+|++.+ +.|+|||+++.|++.+++...
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~ 132 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKK 132 (282)
T ss_pred CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhh
Confidence 4789999999999999999985 799999999999999998743
No 146
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.70 E-value=1.8e-07 Score=80.28 Aligned_cols=91 Identities=16% Similarity=0.133 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126 36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN 115 (240)
Q Consensus 36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~ 115 (240)
++..++.+...+...++.+|||||||+|.++..+++.+ .+|+++|+++.++..++++......+++++.+|+.++....
T Consensus 33 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 33 NPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEH 111 (233)
T ss_pred hHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhc
Confidence 34445566666656678899999999999999998874 68999999999999998876544446778888876543110
Q ss_pred cchhhhcccccCCCCceEEEecCC
Q psy17126 116 MFSEDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~VvsNlP 139 (240)
.+++|+|+++..
T Consensus 112 ------------~~~fD~Ii~~~~ 123 (233)
T PRK05134 112 ------------PGQFDVVTCMEM 123 (233)
T ss_pred ------------CCCccEEEEhhH
Confidence 136788877643
No 147
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.68 E-value=8.3e-08 Score=84.75 Aligned_cols=91 Identities=10% Similarity=-0.008 Sum_probs=61.8
Q ss_pred CCCCEEEEECCchhH----HHHHHHhhC------CCeEEEEeCCcchHHHHHHHHh------c-----------------
Q psy17126 50 ITGNEVCEVGPGPGS----ITRSILNRR------PARLVLIEKDPRFTPCLDMLAQ------A----------------- 96 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~----lt~~La~~~------~~~V~avEid~~m~~~l~~~~~------~----------------- 96 (240)
.++.+|+|+|||||. +++.+++.. ..+|+|+|+|+.|++.|++..- .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 355799999999995 566666542 2589999999999999987420 0
Q ss_pred -----CCCCeEEEEcccccccccccchhhhcccccCCCCceEEEe-cCCCCCCHHHHHHHHHh
Q psy17126 97 -----SPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIG-NLPFNVSTPLIIKWIQA 153 (240)
Q Consensus 97 -----~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~Vvs-NlPY~Iss~il~~ll~~ 153 (240)
...++++.++|+.+.+++. +++|+|++ |.=.+.+.+...+++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~-------------~~fD~I~crnvl~yf~~~~~~~~l~~ 227 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPL-------------GDFDLIFCRNVLIYFDEPTQRKLLNR 227 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCcc-------------CCCCEEEechhHHhCCHHHHHHHHHH
Confidence 0136888889988765421 36788877 44445555554445443
No 148
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.68 E-value=8.2e-09 Score=76.91 Aligned_cols=86 Identities=13% Similarity=0.038 Sum_probs=47.9
Q ss_pred EEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCCCCceE
Q psy17126 56 CEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133 (240)
Q Consensus 56 LEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (240)
||||||+|.++..++... ..+++++|+|+.|++.++++..... .+...+..+..+...... .+++|.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~fD~ 69 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDP-----------PESFDL 69 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC---------------SE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhccc-----------ccccce
Confidence 799999999999999984 3799999999999988877665543 334444444433211110 126788
Q ss_pred EEecCCCCCCHHHHHHHHHh
Q psy17126 134 IIGNLPFNVSTPLIIKWIQA 153 (240)
Q Consensus 134 VvsNlPY~Iss~il~~ll~~ 153 (240)
|+++--..-. +-+..++..
T Consensus 70 V~~~~vl~~l-~~~~~~l~~ 88 (99)
T PF08242_consen 70 VVASNVLHHL-EDIEAVLRN 88 (99)
T ss_dssp EEEE-TTS---S-HHHHHHH
T ss_pred ehhhhhHhhh-hhHHHHHHH
Confidence 8876543322 333344444
No 149
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.67 E-value=2.1e-08 Score=83.82 Aligned_cols=86 Identities=14% Similarity=0.266 Sum_probs=65.1
Q ss_pred ccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEc
Q psy17126 28 QLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLG 106 (240)
Q Consensus 28 ~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~ 106 (240)
+|..+.|.|-.-+...-+++.-...+.+.|+|+|+|.|+...++. +.+|+|||.||.-..++.+|+.-.+ .|++++.+
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~va~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~g 87 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEVAEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVG 87 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHhhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEec
Confidence 355556666554433333332223478999999999999998887 6899999999999999998864333 78999999
Q ss_pred cccccccc
Q psy17126 107 DVMSFTMQ 114 (240)
Q Consensus 107 D~~~~~~~ 114 (240)
|+..++++
T Consensus 88 DA~~y~fe 95 (252)
T COG4076 88 DARDYDFE 95 (252)
T ss_pred cccccccc
Confidence 99999874
No 150
>KOG1500|consensus
Probab=98.67 E-value=6.7e-08 Score=87.17 Aligned_cols=84 Identities=14% Similarity=0.187 Sum_probs=67.5
Q ss_pred HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccccccccch
Q psy17126 41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNMFS 118 (240)
Q Consensus 41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~~~~ 118 (240)
+.|++...--.+..|||+|||+|.|+...+..++++|+|||-+ +|.+++++..+.. .+++++|.|-++++.+++
T Consensus 167 ~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE--- 242 (517)
T KOG1500|consen 167 RAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPE--- 242 (517)
T ss_pred HHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCch---
Confidence 3444433334678999999999999999999988999999986 6899999876543 378999999999998875
Q ss_pred hhhcccccCCCCceEEEecCC
Q psy17126 119 EDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~VvsNlP 139 (240)
+.|++|+.+=
T Consensus 243 -----------k~DviISEPM 252 (517)
T KOG1500|consen 243 -----------KVDVIISEPM 252 (517)
T ss_pred -----------hccEEEeccc
Confidence 4588888753
No 151
>PRK00811 spermidine synthase; Provisional
Probab=98.67 E-value=7.7e-08 Score=85.77 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=61.1
Q ss_pred CCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhcC------CCCeEEEEcccccccccccchhhhcc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQAS------PCPVHFHLGDVMSFTMQNMFSEDRRR 123 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~~------~~~v~vi~~D~~~~~~~~~~~~~~~~ 123 (240)
...+||+||||+|.+++.++++ ...+|++||+|+.+++.+++..... .++++++.+|+.++- .. .
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l-~~-~------ 147 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV-AE-T------ 147 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH-hh-C------
Confidence 4679999999999999999987 3469999999999999999866421 368999999998742 11 0
Q ss_pred cccCCCCceEEEecC
Q psy17126 124 DWSEGLPGIRIIGNL 138 (240)
Q Consensus 124 ~~~~~~~~~~VvsNl 138 (240)
.+++|+||+++
T Consensus 148 ----~~~yDvIi~D~ 158 (283)
T PRK00811 148 ----ENSFDVIIVDS 158 (283)
T ss_pred ----CCcccEEEECC
Confidence 14689999986
No 152
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.66 E-value=9.3e-08 Score=81.24 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=68.9
Q ss_pred HHhCchhhhccCccccCCHHHHH--HHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHh
Q psy17126 19 KLYKLRALKQLSQNFLFEPRLTD--KIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQ 95 (240)
Q Consensus 19 ~~~~~~~~k~~gQ~fl~d~~i~~--~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~ 95 (240)
+.+|++.+=.+.+.|.-.....+ +|++. ..++++|+|+.||.|.++..+++.. +..|+|+|++|..++.++++++
T Consensus 69 ~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~ 146 (200)
T PF02475_consen 69 KENGIRFKVDLSKVYFSPRLSTERRRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIR 146 (200)
T ss_dssp EETTEEEEEETTTS---GGGHHHHHHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHH
T ss_pred EeCCEEEEEccceEEEccccHHHHHHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHH
Confidence 34555544445554444433333 33332 5689999999999999999999832 4789999999999999999876
Q ss_pred cCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126 96 ASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143 (240)
Q Consensus 96 ~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is 143 (240)
... +++.++++|+.++... ..+|.|+.|+|....
T Consensus 147 lNkv~~~i~~~~~D~~~~~~~--------------~~~drvim~lp~~~~ 182 (200)
T PF02475_consen 147 LNKVENRIEVINGDAREFLPE--------------GKFDRVIMNLPESSL 182 (200)
T ss_dssp HTT-TTTEEEEES-GGG---T--------------T-EEEEEE--TSSGG
T ss_pred HcCCCCeEEEEcCCHHHhcCc--------------cccCEEEECChHHHH
Confidence 543 7799999999886431 357999999997543
No 153
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.65 E-value=2e-07 Score=79.90 Aligned_cols=70 Identities=13% Similarity=0.012 Sum_probs=53.9
Q ss_pred HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-------------CCCCeEEEEcccc
Q psy17126 43 IVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-------------SPCPVHFHLGDVM 109 (240)
Q Consensus 43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-------------~~~~v~vi~~D~~ 109 (240)
.+..+...++.+|||+|||.|.-+..|+.+| ..|+|||+|+.+++.+.+.... ...+++++++|+.
T Consensus 26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G-~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~ 104 (213)
T TIGR03840 26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQG-HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFF 104 (213)
T ss_pred HHHhhCCCCCCeEEEeCCCchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCC
Confidence 4444433467799999999999999999986 6999999999999986432110 1246899999998
Q ss_pred cccc
Q psy17126 110 SFTM 113 (240)
Q Consensus 110 ~~~~ 113 (240)
+++.
T Consensus 105 ~~~~ 108 (213)
T TIGR03840 105 ALTA 108 (213)
T ss_pred CCCc
Confidence 8763
No 154
>KOG3191|consensus
Probab=98.64 E-value=1.5e-07 Score=78.27 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=65.0
Q ss_pred CCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCC
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~ 128 (240)
....++|||||+|..+..|++.. .....+.|+++..++...+.+....-++.+++.|...- +..
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~------------- 108 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRN------------- 108 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hcc-------------
Confidence 35789999999999999999864 25789999999999988776654446688899988652 111
Q ss_pred CCceEEEecCCCCCCHHH
Q psy17126 129 LPGIRIIGNLPFNVSTPL 146 (240)
Q Consensus 129 ~~~~~VvsNlPY~Iss~i 146 (240)
++.|+++-|+||-.+++-
T Consensus 109 ~~VDvLvfNPPYVpt~~~ 126 (209)
T KOG3191|consen 109 ESVDVLVFNPPYVPTSDE 126 (209)
T ss_pred CCccEEEECCCcCcCCcc
Confidence 367999999999888754
No 155
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.64 E-value=1.1e-07 Score=80.76 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHcCC----CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCC-CeEEEEcccc
Q psy17126 35 FEPRLTDKIVRNAGT----ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPC-PVHFHLGDVM 109 (240)
Q Consensus 35 ~d~~i~~~iv~~~~~----~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~-~v~vi~~D~~ 109 (240)
.++..+..+.+.+.. ..+.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++....+. +++++.+|+.
T Consensus 25 ~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~ 103 (224)
T TIGR01983 25 MNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVE 103 (224)
T ss_pred hhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHH
Confidence 356566666666652 347899999999999999998875 5899999999999999887654433 6888889887
Q ss_pred cccccccchhhhcccccCCCCceEEEecC
Q psy17126 110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138 (240)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNl 138 (240)
++.... .+++|.|+++-
T Consensus 104 ~~~~~~------------~~~~D~i~~~~ 120 (224)
T TIGR01983 104 DLAEKG------------AKSFDVVTCME 120 (224)
T ss_pred HhhcCC------------CCCccEEEehh
Confidence 754321 13678888763
No 156
>PRK04457 spermidine synthase; Provisional
Probab=98.63 E-value=3.5e-07 Score=80.69 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=63.7
Q ss_pred HHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccccccc
Q psy17126 40 TDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQN 115 (240)
Q Consensus 40 ~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~ 115 (240)
.+.|+..+. ..+..+|||||||+|.++..+++.. ..+|++||+|+.+++.++++.... .++++++.+|+.++ +..
T Consensus 54 ~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-l~~ 132 (262)
T PRK04457 54 TRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-IAV 132 (262)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH-HHh
Confidence 344443332 3356789999999999999998875 368999999999999999875432 36899999999764 111
Q ss_pred cchhhhcccccCCCCceEEEecC
Q psy17126 116 MFSEDRRRDWSEGLPGIRIIGNL 138 (240)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~VvsNl 138 (240)
. ..++|+|+.+.
T Consensus 133 ~-----------~~~yD~I~~D~ 144 (262)
T PRK04457 133 H-----------RHSTDVILVDG 144 (262)
T ss_pred C-----------CCCCCEEEEeC
Confidence 1 13578888764
No 157
>PTZ00146 fibrillarin; Provisional
Probab=98.61 E-value=2.7e-07 Score=82.47 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=64.8
Q ss_pred HHHHHHHH---HcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 38 RLTDKIVR---NAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 38 ~i~~~iv~---~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
.++..|+. .+.+.++++|||+|||+|.+|..++... ...|+|||++++|.+.+.+.+.. ..|+.++.+|+....
T Consensus 116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-r~NI~~I~~Da~~p~ 194 (293)
T PTZ00146 116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-RPNIVPIIEDARYPQ 194 (293)
T ss_pred HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-cCCCEEEECCccChh
Confidence 35555643 3457899999999999999999999974 36899999999877555543322 268999999987521
Q ss_pred -ccccchhhhcccccCCCCceEEEecCC
Q psy17126 113 -MQNMFSEDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 113 -~~~~~~~~~~~~~~~~~~~~~VvsNlP 139 (240)
+.... ..+|+|+++..
T Consensus 195 ~y~~~~-----------~~vDvV~~Dva 211 (293)
T PTZ00146 195 KYRMLV-----------PMVDVIFADVA 211 (293)
T ss_pred hhhccc-----------CCCCEEEEeCC
Confidence 11111 24789999875
No 158
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.59 E-value=3.8e-07 Score=78.47 Aligned_cols=69 Identities=10% Similarity=-0.037 Sum_probs=53.0
Q ss_pred HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-------------CCCCeEEEEcccc
Q psy17126 43 IVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-------------SPCPVHFHLGDVM 109 (240)
Q Consensus 43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-------------~~~~v~vi~~D~~ 109 (240)
.+..+...++.+|||+|||.|.-+..|+.++ .+|+|||+++..++.+...... ...+++++++|+.
T Consensus 29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G-~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQG-HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred HHHhhCCCCCCeEEEeCCCChHhHHHHHhCC-CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECccc
Confidence 3333444567899999999999999999986 6999999999999976431100 1257899999999
Q ss_pred ccc
Q psy17126 110 SFT 112 (240)
Q Consensus 110 ~~~ 112 (240)
++.
T Consensus 108 ~l~ 110 (218)
T PRK13255 108 ALT 110 (218)
T ss_pred CCC
Confidence 875
No 159
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.58 E-value=3.5e-07 Score=86.51 Aligned_cols=73 Identities=21% Similarity=0.261 Sum_probs=54.7
Q ss_pred CCEEEEECCchhHHHHHHHhhC-----CCeEEEEeCCcchHHHHHHHH--hcCCCCeEEEEcccccccccccchhhhccc
Q psy17126 52 GNEVCEVGPGPGSITRSILNRR-----PARLVLIEKDPRFTPCLDMLA--QASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~-----~~~V~avEid~~m~~~l~~~~--~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~ 124 (240)
+..|+|||||+|.|....++.+ +.+|+|||.++.++..+++.. ..++++|+++++|+.++.++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe--------- 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE--------- 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS---------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC---------
Confidence 5789999999999998777653 369999999999888776642 334588999999999988764
Q ss_pred ccCCCCceEEEecC
Q psy17126 125 WSEGLPGIRIIGNL 138 (240)
Q Consensus 125 ~~~~~~~~~VvsNl 138 (240)
+.|+|||-+
T Consensus 258 -----kvDIIVSEl 266 (448)
T PF05185_consen 258 -----KVDIIVSEL 266 (448)
T ss_dssp ------EEEEEE--
T ss_pred -----ceeEEEEec
Confidence 468888755
No 160
>KOG1499|consensus
Probab=98.58 E-value=1.4e-07 Score=85.39 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=60.9
Q ss_pred CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccccccccchhhhccccc
Q psy17126 49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126 (240)
Q Consensus 49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~~~~~~~~~~~~ 126 (240)
+-.+++|||+|||||.|+...|+.|+.+|+|||-+.-+ +.+++..... .+.+++++|.+.++.++ .
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP--~--------- 125 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP--V--------- 125 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC--c---------
Confidence 35789999999999999999999988999999987544 7777765443 36699999999998776 1
Q ss_pred CCCCceEEEec
Q psy17126 127 EGLPGIRIIGN 137 (240)
Q Consensus 127 ~~~~~~~VvsN 137 (240)
++.|+|||-
T Consensus 126 --eKVDiIvSE 134 (346)
T KOG1499|consen 126 --EKVDIIVSE 134 (346)
T ss_pred --cceeEEeeh
Confidence 356888875
No 161
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.57 E-value=2.7e-07 Score=73.64 Aligned_cols=49 Identities=22% Similarity=0.357 Sum_probs=39.9
Q ss_pred HHHHHHHcC-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHH
Q psy17126 40 TDKIVRNAG-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPC 89 (240)
Q Consensus 40 ~~~iv~~~~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~ 89 (240)
.+.+.+... ..++.+|||||||+|.++..++..+ .+|+|+|+++.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRG-FEVTGVDISPQMIEK 59 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT-SEEEEEESSHHHHHH
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHhh
Confidence 333433443 4678999999999999999998875 599999999999877
No 162
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.57 E-value=3.6e-07 Score=76.27 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=54.2
Q ss_pred cCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhccc
Q psy17126 47 AGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRD 124 (240)
Q Consensus 47 ~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~ 124 (240)
..+.++++|||+|||||.++..++.+. ..+|+|+|+++.+ . ..+++++++|+.+.+......+ .
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-~~~i~~~~~d~~~~~~~~~l~~----~ 93 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-IENVDFIRGDFTDEEVLNKIRE----R 93 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-CCCceEEEeeCCChhHHHHHHH----H
Confidence 345789999999999999999998864 2579999999865 1 1468899999876432110000 0
Q ss_pred ccCCCCceEEEecC
Q psy17126 125 WSEGLPGIRIIGNL 138 (240)
Q Consensus 125 ~~~~~~~~~VvsNl 138 (240)
. ..+.+|+|++|.
T Consensus 94 ~-~~~~~D~V~~~~ 106 (188)
T TIGR00438 94 V-GDDKVDVVMSDA 106 (188)
T ss_pred h-CCCCccEEEcCC
Confidence 0 113689999885
No 163
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.56 E-value=1.3e-07 Score=80.56 Aligned_cols=82 Identities=13% Similarity=0.083 Sum_probs=61.8
Q ss_pred CCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccc
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDW 125 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~ 125 (240)
....+|||||||+|.-|..++... .++|+++|+++...+.++++++..+ ++++++.||+.++ ++.+....
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~-l~~l~~~~----- 117 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV-LPELANDG----- 117 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH-HHHHHHTT-----
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh-HHHHHhcc-----
Confidence 345799999999999999999853 3799999999999999999877654 7899999999874 33332210
Q ss_pred cCCCCceEEEecC
Q psy17126 126 SEGLPGIRIIGNL 138 (240)
Q Consensus 126 ~~~~~~~~VvsNl 138 (240)
..++||.|+-.-
T Consensus 118 -~~~~fD~VFiDa 129 (205)
T PF01596_consen 118 -EEGQFDFVFIDA 129 (205)
T ss_dssp -TTTSEEEEEEES
T ss_pred -CCCceeEEEEcc
Confidence 013689888654
No 164
>PLN03075 nicotianamine synthase; Provisional
Probab=98.54 E-value=3.8e-07 Score=81.76 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=60.2
Q ss_pred HHHHcCCCCCCEEEEECCchhHHHHHHHh--hC-CCeEEEEeCCcchHHHHHHHHhc-C--CCCeEEEEccccccccccc
Q psy17126 43 IVRNAGTITGNEVCEVGPGPGSITRSILN--RR-PARLVLIEKDPRFTPCLDMLAQA-S--PCPVHFHLGDVMSFTMQNM 116 (240)
Q Consensus 43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~--~~-~~~V~avEid~~m~~~l~~~~~~-~--~~~v~vi~~D~~~~~~~~~ 116 (240)
++......+.++|+|||||+|.+|..++. .. .++++++|+|+++++.+++.+.. . .++++|+.+|+.+.. ..+
T Consensus 115 ~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~-~~l 193 (296)
T PLN03075 115 LLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT-ESL 193 (296)
T ss_pred HHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc-ccc
Confidence 33333334678999999999988765544 22 36899999999999999997743 2 367999999998752 111
Q ss_pred chhhhcccccCCCCceEEEec
Q psy17126 117 FSEDRRRDWSEGLPGIRIIGN 137 (240)
Q Consensus 117 ~~~~~~~~~~~~~~~~~VvsN 137 (240)
+.||+|+..
T Consensus 194 ------------~~FDlVF~~ 202 (296)
T PLN03075 194 ------------KEYDVVFLA 202 (296)
T ss_pred ------------CCcCEEEEe
Confidence 357888887
No 165
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.52 E-value=4.3e-07 Score=78.70 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=40.9
Q ss_pred HHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHH
Q psy17126 40 TDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPC 89 (240)
Q Consensus 40 ~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~ 89 (240)
+..+++..++ .++.+|||+|||||.+|..+++.++.+|+|||+++.|+..
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3445555554 3678999999999999999999877899999999987765
No 166
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.51 E-value=7.1e-07 Score=82.89 Aligned_cols=109 Identities=9% Similarity=0.026 Sum_probs=78.0
Q ss_pred cccCCHHHHHHHHHHcCCC-CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccc
Q psy17126 32 NFLFEPRLTDKIVRNAGTI-TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDV 108 (240)
Q Consensus 32 ~fl~d~~i~~~iv~~~~~~-~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~ 108 (240)
|--.++.+...+++.+... ++.+|||++||+|.++..++... ..+|+++|+++..++.+++|++..+ .+++++++|+
T Consensus 37 ~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da 116 (382)
T PRK04338 37 RMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA 116 (382)
T ss_pred cccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH
Confidence 3334555666666655432 35689999999999999998763 3589999999999999999876543 5577899998
Q ss_pred ccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhc
Q psy17126 109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAI 154 (240)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~ 154 (240)
.++- .. . ..+|+|+.||| ....+.+...+...
T Consensus 117 ~~~l-~~---~---------~~fD~V~lDP~-Gs~~~~l~~al~~~ 148 (382)
T PRK04338 117 NALL-HE---E---------RKFDVVDIDPF-GSPAPFLDSAIRSV 148 (382)
T ss_pred HHHH-hh---c---------CCCCEEEECCC-CCcHHHHHHHHHHh
Confidence 6531 11 1 35899999975 66567766645543
No 167
>PRK03612 spermidine synthase; Provisional
Probab=98.47 E-value=3.1e-07 Score=88.47 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=62.5
Q ss_pred CCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHH--Hhc-----C-CCCeEEEEcccccccccccchhh
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDML--AQA-----S-PCPVHFHLGDVMSFTMQNMFSED 120 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~--~~~-----~-~~~v~vi~~D~~~~~~~~~~~~~ 120 (240)
.+.++|||||||+|.+++.++++.. .+|++||+|+++++.++++ ... . +++++++.+|+.++- ...
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l-~~~---- 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL-RKL---- 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH-HhC----
Confidence 4567999999999999999998754 6999999999999999973 211 1 268999999998641 111
Q ss_pred hcccccCCCCceEEEecCCCC
Q psy17126 121 RRRDWSEGLPGIRIIGNLPFN 141 (240)
Q Consensus 121 ~~~~~~~~~~~~~VvsNlPY~ 141 (240)
.+++|+|++|+|..
T Consensus 371 -------~~~fDvIi~D~~~~ 384 (521)
T PRK03612 371 -------AEKFDVIIVDLPDP 384 (521)
T ss_pred -------CCCCCEEEEeCCCC
Confidence 13689999998864
No 168
>PLN02476 O-methyltransferase
Probab=98.43 E-value=1.2e-06 Score=77.94 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=74.8
Q ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccc
Q psy17126 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDV 108 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~ 108 (240)
..+.+...+.+.-.+...+..+|||||+|+|..|..++... .++|+++|.++...+.++++.+..+ ++++++.||+
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA 179 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA 179 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 45667666666555666678899999999999999999753 3689999999999999999887654 6899999999
Q ss_pred ccccccccchhhhcccccCCCCceEEEecCC
Q psy17126 109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP 139 (240)
.+. ++.+..+ ...++||.||-..+
T Consensus 180 ~e~-L~~l~~~------~~~~~FD~VFIDa~ 203 (278)
T PLN02476 180 AES-LKSMIQN------GEGSSYDFAFVDAD 203 (278)
T ss_pred HHH-HHHHHhc------ccCCCCCEEEECCC
Confidence 874 2322110 01146888887655
No 169
>PLN02366 spermidine synthase
Probab=98.41 E-value=1.4e-06 Score=78.78 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=66.4
Q ss_pred HHHHHHHHcC---CCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc----C-CCCeEEEEcccc
Q psy17126 39 LTDKIVRNAG---TITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA----S-PCPVHFHLGDVM 109 (240)
Q Consensus 39 i~~~iv~~~~---~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~----~-~~~v~vi~~D~~ 109 (240)
....++..+. ..+..+||+||||.|.+++.+++.. ..+|+.||+|+.+++.+++.... + .++++++.+|+.
T Consensus 76 ~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~ 155 (308)
T PLN02366 76 AYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV 155 (308)
T ss_pred HHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHH
Confidence 4445554432 2456899999999999999999874 36899999999999999986543 1 368999999987
Q ss_pred cccccccchhhhcccccCCCCceEEEecCCC
Q psy17126 110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY 140 (240)
++- .+. + .+++|+||..++-
T Consensus 156 ~~l-~~~-~---------~~~yDvIi~D~~d 175 (308)
T PLN02366 156 EFL-KNA-P---------EGTYDAIIVDSSD 175 (308)
T ss_pred HHH-hhc-c---------CCCCCEEEEcCCC
Confidence 641 111 0 1368999998753
No 170
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.40 E-value=1.2e-06 Score=83.83 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=86.7
Q ss_pred HHHHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-----CCeEEEEeCCcchHHHH
Q psy17126 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-----PARLVLIEKDPRFTPCL 90 (240)
Q Consensus 16 ~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-----~~~V~avEid~~m~~~l 90 (240)
.+++.+--...++.|| |.+++.+++-|++.+.+.+..+|.|..||||.+-....+.. ...++|.|+++.....+
T Consensus 152 ~ll~~fa~~~~k~~GE-fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~ 230 (489)
T COG0286 152 YLLRKFAEAEGKEAGE-FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLA 230 (489)
T ss_pred HHHHHHHHhcCCCCCc-cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHH
Confidence 3455655556677788 88999999999999988788899999999999876665542 15699999999999998
Q ss_pred HHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126 91 DMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN 141 (240)
Q Consensus 91 ~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~ 141 (240)
+.++--.+ .++.+.++|-+.-+...- . .+.+.+|.|++||||+
T Consensus 231 ~mN~~lhgi~~~~~i~~~dtl~~~~~~~--~------~~~~~~D~viaNPPf~ 275 (489)
T COG0286 231 KMNLILHGIEGDANIRHGDTLSNPKHDD--K------DDKGKFDFVIANPPFS 275 (489)
T ss_pred HHHHHHhCCCccccccccccccCCcccc--c------CCccceeEEEeCCCCC
Confidence 88653222 245677777766553310 0 0124689999999998
No 171
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.40 E-value=1.5e-06 Score=76.97 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=61.1
Q ss_pred CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC-----CCCeEEEEcccccccccccchhhhccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS-----PCPVHFHLGDVMSFTMQNMFSEDRRRD 124 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~-----~~~v~vi~~D~~~~~~~~~~~~~~~~~ 124 (240)
...+||+||||+|.++..++++. ..+|+++|+|+.+++.+++..... .++++++.+|+.++- ...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l-~~~-------- 142 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFL-ADT-------- 142 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHH-HhC--------
Confidence 45699999999999999998875 468999999999999998865332 257889998886531 110
Q ss_pred ccCCCCceEEEecCCCCC
Q psy17126 125 WSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 125 ~~~~~~~~~VvsNlPY~I 142 (240)
.+++|+||.+.+...
T Consensus 143 ---~~~yDvIi~D~~~~~ 157 (270)
T TIGR00417 143 ---ENTFDVIIVDSTDPV 157 (270)
T ss_pred ---CCCccEEEEeCCCCC
Confidence 146899999987443
No 172
>KOG2915|consensus
Probab=98.39 E-value=5.3e-06 Score=73.08 Aligned_cols=111 Identities=18% Similarity=0.068 Sum_probs=88.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhc--CCCCeEEEEcccccccccc
Q psy17126 40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQA--SPCPVHFHLGDVMSFTMQN 115 (240)
Q Consensus 40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~--~~~~v~vi~~D~~~~~~~~ 115 (240)
+..|+..+.+.||.+|+|-|+|+|+++-.+++..+ ++++.+|....-.+.+.+..+. .++++++++.|+..-.+..
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 56688888999999999999999999999998742 7999999998888877765443 3589999999998865542
Q ss_pred cchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHHhcccccccc
Q psy17126 116 MFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQAISENLLFP 161 (240)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~~~~~~~~~~ 161 (240)
. ...+|.|+-.|| .-.+-|-..+.+.+...++|..
T Consensus 174 k-----------s~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 174 K-----------SLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred c-----------ccccceEEEcCCChhhhhhhhHHHhhhcCceEEec
Confidence 1 146799999998 4567788888887766555543
No 173
>KOG1541|consensus
Probab=98.36 E-value=1.3e-06 Score=74.91 Aligned_cols=79 Identities=11% Similarity=0.142 Sum_probs=60.3
Q ss_pred hhccCcc---ccCCHHHHHHHHHHcCCCC--CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCC
Q psy17126 26 LKQLSQN---FLFEPRLTDKIVRNAGTIT--GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP 100 (240)
Q Consensus 26 ~k~~gQ~---fl~d~~i~~~iv~~~~~~~--~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~ 100 (240)
..+|.|| -.++..+..+-++.+.+.. ..-|||||||||--+..|...+ ...+|||+|+.|++.+.+. ...
T Consensus 20 A~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~--e~e-- 94 (270)
T KOG1541|consen 20 APKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVER--ELE-- 94 (270)
T ss_pred hhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHh--hhh--
Confidence 4456666 3566778888888776654 6789999999999999998875 7899999999999999862 221
Q ss_pred eEEEEcccc
Q psy17126 101 VHFHLGDVM 109 (240)
Q Consensus 101 v~vi~~D~~ 109 (240)
-.++.+|+-
T Consensus 95 gdlil~DMG 103 (270)
T KOG1541|consen 95 GDLILCDMG 103 (270)
T ss_pred cCeeeeecC
Confidence 236677765
No 174
>KOG1271|consensus
Probab=98.35 E-value=1.7e-06 Score=72.25 Aligned_cols=74 Identities=12% Similarity=0.182 Sum_probs=57.0
Q ss_pred HHHHHHHHcC---CC-CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccc
Q psy17126 39 LTDKIVRNAG---TI-TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSF 111 (240)
Q Consensus 39 i~~~iv~~~~---~~-~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~ 111 (240)
+++.++.... +. ..++|||+|||.|.+...|++.+ ...++|||.++..++.|+..+++.+ +.+++.+.|+.+-
T Consensus 51 iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~ 130 (227)
T KOG1271|consen 51 IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP 130 (227)
T ss_pred HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC
Confidence 4444444433 33 33599999999999999999986 4569999999999999988766543 4499999999875
Q ss_pred c
Q psy17126 112 T 112 (240)
Q Consensus 112 ~ 112 (240)
+
T Consensus 131 ~ 131 (227)
T KOG1271|consen 131 D 131 (227)
T ss_pred c
Confidence 3
No 175
>PRK01581 speE spermidine synthase; Validated
Probab=98.35 E-value=2.5e-06 Score=78.49 Aligned_cols=80 Identities=21% Similarity=0.183 Sum_probs=61.6
Q ss_pred CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHH--H-----hcC-CCCeEEEEcccccccccccchhh
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDML--A-----QAS-PCPVHFHLGDVMSFTMQNMFSED 120 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~--~-----~~~-~~~v~vi~~D~~~~~~~~~~~~~ 120 (240)
....+||+||||+|..++.+++.. ..+|++||+|++|++.+++. . ..+ .++++++.+|+.++- ...
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL-~~~---- 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL-SSP---- 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH-Hhc----
Confidence 345799999999999999999864 37999999999999999862 1 112 378999999998742 111
Q ss_pred hcccccCCCCceEEEecCCCC
Q psy17126 121 RRRDWSEGLPGIRIIGNLPFN 141 (240)
Q Consensus 121 ~~~~~~~~~~~~~VvsNlPY~ 141 (240)
...+|+||.++|-.
T Consensus 224 -------~~~YDVIIvDl~DP 237 (374)
T PRK01581 224 -------SSLYDVIIIDFPDP 237 (374)
T ss_pred -------CCCccEEEEcCCCc
Confidence 13689999998753
No 176
>KOG2187|consensus
Probab=98.35 E-value=1.2e-06 Score=82.91 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=81.5
Q ss_pred ccCccccCCHHHHHH----HHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-CCeE
Q psy17126 28 QLSQNFLFEPRLTDK----IVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-CPVH 102 (240)
Q Consensus 28 ~~gQ~fl~d~~i~~~----iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-~~v~ 102 (240)
+=|-.|-++...++. |=+++++..+..++|+.||||.++..+++. ..+|+|||++++.++-|+.++...+ .|.+
T Consensus 356 Sp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~ 434 (534)
T KOG2187|consen 356 SPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNAT 434 (534)
T ss_pred CCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCcccee
Confidence 333444455544433 445678888899999999999999999987 5899999999999999999876655 8999
Q ss_pred EEEcccccccccccchhhhcccccCCCCceEEEecCCCC-CCHHHHHHHHH
Q psy17126 103 FHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN-VSTPLIIKWIQ 152 (240)
Q Consensus 103 vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~-Iss~il~~ll~ 152 (240)
|++|-++++ ++.++.. .+ +..-.++|.++|-. +....|..+..
T Consensus 435 Fi~gqaE~~-~~sl~~~----~~--~~~~~v~iiDPpR~Glh~~~ik~l~~ 478 (534)
T KOG2187|consen 435 FIVGQAEDL-FPSLLTP----CC--DSETLVAIIDPPRKGLHMKVIKALRA 478 (534)
T ss_pred eeecchhhc-cchhccc----CC--CCCceEEEECCCcccccHHHHHHHHh
Confidence 999977765 3333221 00 01235888999964 44444433333
No 177
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.34 E-value=5.6e-07 Score=76.79 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=60.9
Q ss_pred HhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHh---
Q psy17126 20 LYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQ--- 95 (240)
Q Consensus 20 ~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~--- 95 (240)
.|.-....-||- +.+..+..|++.+++.+++..+|||||.|......+.. ++.+++|||+.+.....++...+
T Consensus 14 ~y~~~s~~~YGE---i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~ 90 (205)
T PF08123_consen 14 KYKSFSSETYGE---ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELK 90 (205)
T ss_dssp CSTTTCCCCGGG---CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHH
T ss_pred ccccCCCcceee---cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHH
Confidence 333333444655 46788899999999999999999999999998777654 35679999999998877765321
Q ss_pred ----cC---CCCeEEEEcccccccc
Q psy17126 96 ----AS---PCPVHFHLGDVMSFTM 113 (240)
Q Consensus 96 ----~~---~~~v~vi~~D~~~~~~ 113 (240)
.+ ..++++.++|+.+.++
T Consensus 91 ~~~~~~g~~~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 91 KRMKHYGKRPGKVELIHGDFLDPDF 115 (205)
T ss_dssp HHHHHCTB---EEEEECS-TTTHHH
T ss_pred HHHHHhhcccccceeeccCccccHh
Confidence 12 2568899999988664
No 178
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.33 E-value=1.6e-06 Score=73.30 Aligned_cols=77 Identities=23% Similarity=0.276 Sum_probs=56.1
Q ss_pred CEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126 53 NEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~ 130 (240)
..+||||||.|.++..+|...+ ..++|||+....+..+..++...+ .|+.++++|+..+ +..+++. +.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~-l~~~~~~---------~~ 88 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL-LRRLFPP---------GS 88 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH-HHHHSTT---------TS
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH-HhhcccC---------Cc
Confidence 4899999999999999998754 789999999999988877655434 8999999999874 3333321 35
Q ss_pred ceEEEecCC
Q psy17126 131 GIRIIGNLP 139 (240)
Q Consensus 131 ~~~VvsNlP 139 (240)
.+.|.-|-|
T Consensus 89 v~~i~i~FP 97 (195)
T PF02390_consen 89 VDRIYINFP 97 (195)
T ss_dssp EEEEEEES-
T ss_pred hheEEEeCC
Confidence 666776665
No 179
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.30 E-value=1.4e-06 Score=79.44 Aligned_cols=85 Identities=20% Similarity=0.215 Sum_probs=69.1
Q ss_pred HHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchh
Q psy17126 42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSE 119 (240)
Q Consensus 42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~ 119 (240)
++++.. .+|.+|+|.=+|-|.+|..+|+.+..+|+|+|++|..++.+++|+.... +.+..++||+.++...-
T Consensus 181 Rva~~v--~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---- 254 (341)
T COG2520 181 RVAELV--KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---- 254 (341)
T ss_pred HHHhhh--cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc----
Confidence 344444 4599999999999999999999875569999999999999999876543 55899999999875331
Q ss_pred hhcccccCCCCceEEEecCCCC
Q psy17126 120 DRRRDWSEGLPGIRIIGNLPFN 141 (240)
Q Consensus 120 ~~~~~~~~~~~~~~VvsNlPY~ 141 (240)
+.+|.|+.|+|..
T Consensus 255 ---------~~aDrIim~~p~~ 267 (341)
T COG2520 255 ---------GVADRIIMGLPKS 267 (341)
T ss_pred ---------ccCCEEEeCCCCc
Confidence 2479999999973
No 180
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.27 E-value=3.6e-06 Score=69.70 Aligned_cols=61 Identities=21% Similarity=0.170 Sum_probs=42.8
Q ss_pred CCCCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhcC----CCCeEEEEccccc
Q psy17126 49 TITGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQAS----PCPVHFHLGDVMS 110 (240)
Q Consensus 49 ~~~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~~----~~~v~vi~~D~~~ 110 (240)
...+.+|||+|||+|..+..++.. ++.+|++.|.++ .++.++.+++.. ..++++..-|+-+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~ 108 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGD 108 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecC
Confidence 457899999999999999999987 457999999999 889998887653 2567777777654
No 181
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.25 E-value=5.4e-06 Score=74.31 Aligned_cols=117 Identities=14% Similarity=0.202 Sum_probs=74.7
Q ss_pred HHHHHHHhCchhhhc---cCccccCCHHHH-----HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcc
Q psy17126 14 IRDIIKLYKLRALKQ---LSQNFLFEPRLT-----DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPR 85 (240)
Q Consensus 14 ~~~~~~~~~~~~~k~---~gQ~fl~d~~i~-----~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~ 85 (240)
+++.++......|-- +|- .+|.++. +.+...+..-.|.+|||||||.|..+..++.+++..|+|+|.+..
T Consensus 72 l~~~l~~l~PWRKGPf~l~gi--~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l 149 (315)
T PF08003_consen 72 LEQLLKALMPWRKGPFSLFGI--HIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL 149 (315)
T ss_pred HHHHHHhhCCcccCCcccCCE--eecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH
Confidence 455566555443322 343 2455543 446666655679999999999999999999998889999999988
Q ss_pred hHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEe-cCCCCCCHHH
Q psy17126 86 FTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIG-NLPFNVSTPL 146 (240)
Q Consensus 86 m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~Vvs-NlPY~Iss~i 146 (240)
..-..+-...-.+ ..+..+.--+++++. . +.||.|++ ..=|+..+|+
T Consensus 150 f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~--~------------~~FDtVF~MGVLYHrr~Pl 199 (315)
T PF08003_consen 150 FYLQFEAIKHFLGQDPPVFELPLGVEDLPN--L------------GAFDTVFSMGVLYHRRSPL 199 (315)
T ss_pred HHHHHHHHHHHhCCCccEEEcCcchhhccc--c------------CCcCEEEEeeehhccCCHH
Confidence 7765443222222 223333223333321 1 35787766 5669999998
No 182
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.24 E-value=5.2e-06 Score=71.43 Aligned_cols=89 Identities=16% Similarity=0.117 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEE-cccccc
Q psy17126 37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHL-GDVMSF 111 (240)
Q Consensus 37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~-~D~~~~ 111 (240)
+.....+...+......+|||||++.|.-|..++...+ +++|++|+++++++.|+++.++.+ +++.++. +|+++.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 55555555555666788999999999999999998643 789999999999999999987765 6688998 588764
Q ss_pred cccccchhhhcccccCCCCceEEEe
Q psy17126 112 TMQNMFSEDRRRDWSEGLPGIRIIG 136 (240)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~Vvs 136 (240)
++... .++||.||-
T Consensus 125 -l~~~~----------~~~fDliFI 138 (219)
T COG4122 125 -LSRLL----------DGSFDLVFI 138 (219)
T ss_pred -HHhcc----------CCCccEEEE
Confidence 22211 146888885
No 183
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.24 E-value=5.7e-07 Score=77.46 Aligned_cols=75 Identities=13% Similarity=0.212 Sum_probs=57.5
Q ss_pred HHHHHHHh----CchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHH
Q psy17126 14 IRDIIKLY----KLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPC 89 (240)
Q Consensus 14 ~~~~~~~~----~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~ 89 (240)
+.+++..| ...--.++|.. =|..+..++..++..+-.++||+|||||-.+..|-.+ ..+++|||+|.+|++.
T Consensus 87 Ve~LFD~~Ae~Fd~~LVdkL~Y~---vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~k 162 (287)
T COG4976 87 VETLFDQYAERFDHILVDKLGYS---VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAK 162 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc---cHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHH
Confidence 45555443 33333344432 3667777888888777899999999999999999887 5799999999999999
Q ss_pred HHH
Q psy17126 90 LDM 92 (240)
Q Consensus 90 l~~ 92 (240)
+.+
T Consensus 163 A~e 165 (287)
T COG4976 163 AHE 165 (287)
T ss_pred HHh
Confidence 876
No 184
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.24 E-value=3.4e-06 Score=78.41 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=78.9
Q ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEcccc
Q psy17126 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVM 109 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~ 109 (240)
|..|.....+.+... -.|++||++-|=||.++...+..|+.+||+||+|...++.+++|.+-.+ .++.++++|+.
T Consensus 201 fFlDqR~~R~~l~~~--~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf 278 (393)
T COG1092 201 FFLDQRDNRRALGEL--AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278 (393)
T ss_pred eeHHhHHHHHHHhhh--ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence 344444444444332 2389999999999999999999877799999999999999999876433 56899999998
Q ss_pred cccccccchhhhcccccCCCCceEEEecCC-CCCCHHHHHHHHH
Q psy17126 110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKWIQ 152 (240)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP-Y~Iss~il~~ll~ 152 (240)
++ +...-. .+.+||+||-.|| |.-+..-+++...
T Consensus 279 ~~-l~~~~~--------~g~~fDlIilDPPsF~r~k~~~~~~~r 313 (393)
T COG1092 279 KW-LRKAER--------RGEKFDLIILDPPSFARSKKQEFSAQR 313 (393)
T ss_pred HH-HHHHHh--------cCCcccEEEECCcccccCcccchhHHH
Confidence 75 332211 1247999999999 5555544544433
No 185
>KOG2730|consensus
Probab=98.23 E-value=1.4e-06 Score=74.61 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=80.3
Q ss_pred ccccCCHHHHHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcc
Q psy17126 31 QNFLFEPRLTDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGD 107 (240)
Q Consensus 31 Q~fl~d~~i~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D 107 (240)
|.-.+...++..|+..... .....|+|.-||-|.-|...+.++ ..|++||+||.-+..+++|++-++ +++++++||
T Consensus 73 wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~-~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD 151 (263)
T KOG2730|consen 73 WFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQG-PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGD 151 (263)
T ss_pred eEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhC-CeEEEEeccHHHHHHHhccceeecCCceeEEEech
Confidence 4334445566666554422 256789999999999999999986 699999999999999999987665 899999999
Q ss_pred ccccccccc-chhhhcccccCCCCceEEEecCCCCCCHHHHHHH
Q psy17126 108 VMSFTMQNM-FSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKW 150 (240)
Q Consensus 108 ~~~~~~~~~-~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~l 150 (240)
++++- +.+ +++ ...+.|+..+|+.-++-+.-+.
T Consensus 152 ~ld~~-~~lq~~K---------~~~~~vf~sppwggp~y~~~~~ 185 (263)
T KOG2730|consen 152 FLDLA-SKLKADK---------IKYDCVFLSPPWGGPSYLRADV 185 (263)
T ss_pred HHHHH-HHHhhhh---------heeeeeecCCCCCCcchhhhhh
Confidence 98863 222 111 3467899999987776654443
No 186
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.22 E-value=1.1e-06 Score=75.95 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=71.1
Q ss_pred HHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHH--hcC-CCCeEEEEcccccccccccchhhh
Q psy17126 45 RNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLA--QAS-PCPVHFHLGDVMSFTMQNMFSEDR 121 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~--~~~-~~~v~vi~~D~~~~~~~~~~~~~~ 121 (240)
+.+.++.|.+|||.+.|.|..++..+++++.+|+.||.|+..++.+.-|- .+. ..+++++.||+.++- +++ +
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V-~~~-~--- 202 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVV-KDF-D--- 202 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHH-hcC-C---
Confidence 44566789999999999999999999998679999999999998876531 111 246899999998752 222 1
Q ss_pred cccccCCCCceEEEecCC-CCCCHHH
Q psy17126 122 RRDWSEGLPGIRIIGNLP-FNVSTPL 146 (240)
Q Consensus 122 ~~~~~~~~~~~~VvsNlP-Y~Iss~i 146 (240)
...+|+||..|| |++++.+
T Consensus 203 ------D~sfDaIiHDPPRfS~AgeL 222 (287)
T COG2521 203 ------DESFDAIIHDPPRFSLAGEL 222 (287)
T ss_pred ------ccccceEeeCCCccchhhhH
Confidence 146899999999 8888855
No 187
>KOG4300|consensus
Probab=98.21 E-value=2.8e-06 Score=72.22 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=58.9
Q ss_pred HcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC-CCCeE-EEEccccccc-ccccchhhhc
Q psy17126 46 NAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS-PCPVH-FHLGDVMSFT-MQNMFSEDRR 122 (240)
Q Consensus 46 ~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~-~~~v~-vi~~D~~~~~-~~~~~~~~~~ 122 (240)
.++......|||||||||.--...--....+||++|.++.|-+.+.+.+++. +.++. +++++.++++ +++
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d------- 143 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLAD------- 143 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccccc-------
Confidence 3333333468999999999865554322369999999999999998866543 36677 9999999875 332
Q ss_pred ccccCCCCceEEEecCC
Q psy17126 123 RDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 123 ~~~~~~~~~~~VvsNlP 139 (240)
+++|.||+-+=
T Consensus 144 ------~s~DtVV~Tlv 154 (252)
T KOG4300|consen 144 ------GSYDTVVCTLV 154 (252)
T ss_pred ------CCeeeEEEEEE
Confidence 46888888653
No 188
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.14 E-value=5.9e-06 Score=71.58 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCC-CeEEEEcccccc
Q psy17126 52 GNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPC-PVHFHLGDVMSF 111 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~-~v~vi~~D~~~~ 111 (240)
...+||||||.|.++..+|.+.+ ..++|||+....+..+.+.+.+.+- |+.++++|+..+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~ 110 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEV 110 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHH
Confidence 35899999999999999999865 6899999999888888777766665 999999999876
No 189
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.12 E-value=1.7e-05 Score=63.43 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=47.9
Q ss_pred CCCCEEEEECCchhHHHHHHHh-----hCCCeEEEEeCCcchHHHHHHHHhcCC----CCeEEEEccccc
Q psy17126 50 ITGNEVCEVGPGPGSITRSILN-----RRPARLVLIEKDPRFTPCLDMLAQASP----CPVHFHLGDVMS 110 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~-----~~~~~V~avEid~~m~~~l~~~~~~~~----~~v~vi~~D~~~ 110 (240)
.+..+|+|+|||.|.|+..|+. ....+|+|||.++.+++.+.++.+... .++++..+++..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 5678999999999999999998 544799999999999998887665433 345555555543
No 190
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.12 E-value=7.4e-06 Score=64.74 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=48.3
Q ss_pred EEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccc
Q psy17126 54 EVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSF 111 (240)
Q Consensus 54 ~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~ 111 (240)
+|+|||||.|.++..++..++ .+|+++|.++.+.+.++++.+..+ .++++++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999999998864 489999999999999999876433 5688888777653
No 191
>PRK10742 putative methyltransferase; Provisional
Probab=98.11 E-value=1.3e-05 Score=70.11 Aligned_cols=89 Identities=11% Similarity=0.148 Sum_probs=72.6
Q ss_pred HHHHHHcCCCCCC--EEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC------C----CCeEEEEccc
Q psy17126 41 DKIVRNAGTITGN--EVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS------P----CPVHFHLGDV 108 (240)
Q Consensus 41 ~~iv~~~~~~~~~--~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~------~----~~v~vi~~D~ 108 (240)
+.|+++++++++. +|||.=+|+|..+..++.++ ++|++||.++.+...++++++.. . .+++++++|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 4578888988888 99999999999999999997 57999999999999998876552 1 4689999998
Q ss_pred ccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126 109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I 142 (240)
.++ +... ...+|+|.--|||-.
T Consensus 155 ~~~-L~~~-----------~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 155 LTA-LTDI-----------TPRPQVVYLDPMFPH 176 (250)
T ss_pred HHH-HhhC-----------CCCCcEEEECCCCCC
Confidence 775 2221 125899999999965
No 192
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.09 E-value=2.5e-05 Score=72.41 Aligned_cols=90 Identities=10% Similarity=0.035 Sum_probs=71.3
Q ss_pred CEEEEECCchhHHHHHHHhh--CCCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCCC
Q psy17126 53 NEVCEVGPGPGSITRSILNR--RPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La~~--~~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~ 129 (240)
-+|||+.||+|.++..++.+ +..+|+++|+++..++.+++|++... .+++++++|+.++- ... ..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l-~~~-----------~~ 113 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVL-RYR-----------NR 113 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHH-HHh-----------CC
Confidence 58999999999999999987 45799999999999999999886543 46899999997652 111 13
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126 130 PGIRIIGNLPFNVSTPLIIKWIQAIS 155 (240)
Q Consensus 130 ~~~~VvsNlPY~Iss~il~~ll~~~~ 155 (240)
++|+|+-+| |...++.+...+....
T Consensus 114 ~fDvIdlDP-fGs~~~fld~al~~~~ 138 (374)
T TIGR00308 114 KFHVIDIDP-FGTPAPFVDSAIQASA 138 (374)
T ss_pred CCCEEEeCC-CCCcHHHHHHHHHhcc
Confidence 589999887 7776788877776543
No 193
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.09 E-value=1.1e-05 Score=69.46 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-------------CCCCeE
Q psy17126 36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-------------SPCPVH 102 (240)
Q Consensus 36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-------------~~~~v~ 102 (240)
++.+.+. ++.+...++.+||..|||.|.-...|+.++ .+|+|||+++..++.+.+.... ..++++
T Consensus 23 ~p~L~~~-~~~l~~~~~~rvLvPgCG~g~D~~~La~~G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
T PF05724_consen 23 NPALVEY-LDSLALKPGGRVLVPGCGKGYDMLWLAEQG-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT 100 (218)
T ss_dssp THHHHHH-HHHHTTSTSEEEEETTTTTSCHHHHHHHTT-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred CHHHHHH-HHhcCCCCCCeEEEeCCCChHHHHHHHHCC-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence 4444444 444666778899999999999999999986 6999999999999987432110 014689
Q ss_pred EEEccccccccc
Q psy17126 103 FHLGDVMSFTMQ 114 (240)
Q Consensus 103 vi~~D~~~~~~~ 114 (240)
++++|+.+++..
T Consensus 101 ~~~gDfF~l~~~ 112 (218)
T PF05724_consen 101 IYCGDFFELPPE 112 (218)
T ss_dssp EEES-TTTGGGS
T ss_pred EEEcccccCChh
Confidence 999999987643
No 194
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.09 E-value=1.9e-05 Score=69.25 Aligned_cols=78 Identities=9% Similarity=0.004 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126 34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM 109 (240)
Q Consensus 34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~ 109 (240)
.+.+...+.+...+......+|||||+++|.-|..++... .++|+++|.++.....++++.+..+ +++++++||+.
T Consensus 62 ~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~ 141 (247)
T PLN02589 62 TTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence 3445555444444444556799999999999999998753 3699999999999999999876654 88999999998
Q ss_pred cc
Q psy17126 110 SF 111 (240)
Q Consensus 110 ~~ 111 (240)
++
T Consensus 142 e~ 143 (247)
T PLN02589 142 PV 143 (247)
T ss_pred HH
Confidence 74
No 195
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.08 E-value=1.3e-05 Score=71.59 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=65.9
Q ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEcccc
Q psy17126 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVM 109 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~ 109 (240)
|..|..-.++.++.. ..+.+||++=|=||+++...+..++.+|++||.|...++.+++|+...+ .+++++.+|+.
T Consensus 107 lFlDqR~nR~~v~~~--~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf 184 (286)
T PF10672_consen 107 LFLDQRENRKWVRKY--AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF 184 (286)
T ss_dssp S-GGGHHHHHHHHHH--CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred EcHHHHhhHHHHHHH--cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence 344444444444443 3578999999999999999888776799999999999999999876433 57999999998
Q ss_pred cccccccchhhhcccccCCCCceEEEecCC
Q psy17126 110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlP 139 (240)
++ +..+-. .++||+||..||
T Consensus 185 ~~-l~~~~~---------~~~fD~IIlDPP 204 (286)
T PF10672_consen 185 KF-LKRLKK---------GGRFDLIILDPP 204 (286)
T ss_dssp HH-HHHHHH---------TT-EEEEEE--S
T ss_pred HH-HHHHhc---------CCCCCEEEECCC
Confidence 74 222211 257999999999
No 196
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.06 E-value=3.6e-05 Score=66.63 Aligned_cols=77 Identities=8% Similarity=-0.026 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh-------------cCCCCe
Q psy17126 35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-------------ASPCPV 101 (240)
Q Consensus 35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~-------------~~~~~v 101 (240)
.++.+.+.+-+ +...++.+||..|||.|.-...|+.+| .+|+|||+|+..++.+.+... ..+.++
T Consensus 28 pnp~L~~~~~~-l~~~~~~rvLvPgCGkg~D~~~LA~~G-~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 105 (226)
T PRK13256 28 PNEFLVKHFSK-LNINDSSVCLIPMCGCSIDMLFFLSKG-VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDI 105 (226)
T ss_pred CCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHhCC-CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCce
Confidence 45555565533 444567899999999999999999986 689999999999998754210 013579
Q ss_pred EEEEcccccccc
Q psy17126 102 HFHLGDVMSFTM 113 (240)
Q Consensus 102 ~vi~~D~~~~~~ 113 (240)
+++++|+.+++.
T Consensus 106 ~~~~gD~f~l~~ 117 (226)
T PRK13256 106 EIYVADIFNLPK 117 (226)
T ss_pred EEEEccCcCCCc
Confidence 999999998753
No 197
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.01 E-value=3e-05 Score=73.91 Aligned_cols=88 Identities=17% Similarity=0.049 Sum_probs=69.8
Q ss_pred HHHHHHc--CCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccc
Q psy17126 41 DKIVRNA--GTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQN 115 (240)
Q Consensus 41 ~~iv~~~--~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~ 115 (240)
...+..+ .+.++++|||+|||+|.=|..++... .+.|+|+|+++.-+..+++++++++ .|+.+.+.|..++. .
T Consensus 101 ~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~--~ 178 (470)
T PRK11933 101 MLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG--A 178 (470)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh--h
Confidence 3334445 67899999999999999999999864 3689999999999999999988876 78899999987642 1
Q ss_pred cchhhhcccccCCCCceEEEecCCC
Q psy17126 116 MFSEDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~VvsNlPY 140 (240)
.++ ..||.|+-..|=
T Consensus 179 ~~~----------~~fD~ILvDaPC 193 (470)
T PRK11933 179 ALP----------ETFDAILLDAPC 193 (470)
T ss_pred hch----------hhcCeEEEcCCC
Confidence 111 257888888873
No 198
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.00 E-value=2.5e-05 Score=70.39 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=71.9
Q ss_pred cccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccc
Q psy17126 32 NFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMS 110 (240)
Q Consensus 32 ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~ 110 (240)
||.+-|-+++.+++.+.+.++..++|.=+|.|.-|..+++.. .++|+|+|.|+.++..+++++..+.++++++++++.+
T Consensus 1 ~~~H~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 1 NFFHQSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred CCCCcchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 567778899999999998899999999999999999999874 3799999999999999998776666789999999987
Q ss_pred cc
Q psy17126 111 FT 112 (240)
Q Consensus 111 ~~ 112 (240)
+.
T Consensus 81 l~ 82 (305)
T TIGR00006 81 FF 82 (305)
T ss_pred HH
Confidence 54
No 199
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.97 E-value=3.8e-05 Score=68.95 Aligned_cols=90 Identities=11% Similarity=0.035 Sum_probs=48.3
Q ss_pred CCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhcC---CCCeEEEEcccccccccccchhhhcccccC
Q psy17126 52 GNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQAS---PCPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~~---~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~ 127 (240)
.-++||||+|.-.+--.|..+ ..=+++|.|+|+..++.|+++.+.. .++++++...-...=+..+...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~-------- 174 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQP-------- 174 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT---------
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcc--------
Confidence 458999999998765444433 2369999999999999999987654 3789888664322112222111
Q ss_pred CCCceEEEecCCCCCCHHHHHH
Q psy17126 128 GLPGIRIIGNLPFNVSTPLIIK 149 (240)
Q Consensus 128 ~~~~~~VvsNlPY~Iss~il~~ 149 (240)
...+|.+++||||+-|......
T Consensus 175 ~e~~dftmCNPPFy~s~~e~~~ 196 (299)
T PF05971_consen 175 NERFDFTMCNPPFYSSQEEAEA 196 (299)
T ss_dssp -S-EEEEEE-----SS------
T ss_pred cceeeEEecCCccccChhhhcc
Confidence 1368999999999998866543
No 200
>KOG2671|consensus
Probab=97.94 E-value=1.2e-05 Score=73.00 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=89.3
Q ss_pred HHHHHHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHH---
Q psy17126 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL--- 90 (240)
Q Consensus 14 ~~~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l--- 90 (240)
-|++++.|.++.+.-.|- --.|..+.=-++..+.+.+|+.|.|.=.|||++....+.-| +.|+|-|||-+|+...
T Consensus 172 ~R~li~~y~LK~R~yiGn-TSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FG-a~viGtDIDyr~vragrg~ 249 (421)
T KOG2671|consen 172 QRELIEKYDLKKRCYIGN-TSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFG-AYVIGTDIDYRTVRAGRGE 249 (421)
T ss_pred hHhHhhhcccccccccCC-cccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhc-ceeeccccchheeecccCC
Confidence 377899999987776665 66788877777788888999999999999999999988875 7999999999998732
Q ss_pred ----HHHHhcCC---CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCHH
Q psy17126 91 ----DMLAQASP---CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTP 145 (240)
Q Consensus 91 ----~~~~~~~~---~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~ 145 (240)
+.|.+.++ .=+.++.+|+.+-++ .++..+|.||+.|||.|--.
T Consensus 250 ~~si~aNFkQYg~~~~fldvl~~D~sn~~~------------rsn~~fDaIvcDPPYGVRe~ 299 (421)
T KOG2671|consen 250 DESIKANFKQYGSSSQFLDVLTADFSNPPL------------RSNLKFDAIVCDPPYGVREG 299 (421)
T ss_pred CcchhHhHHHhCCcchhhheeeecccCcch------------hhcceeeEEEeCCCcchhhh
Confidence 22333332 124556666665443 33457999999999988543
No 201
>PLN02823 spermine synthase
Probab=97.92 E-value=5e-05 Score=69.43 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=60.6
Q ss_pred CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC-----CCCeEEEEcccccccccccchhhhccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS-----PCPVHFHLGDVMSFTMQNMFSEDRRRD 124 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~-----~~~v~vi~~D~~~~~~~~~~~~~~~~~ 124 (240)
...+||.||+|.|.+++.+++.. ..+|++||+|+.+++.+++..... .++++++.+|+.++= ...
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L-~~~-------- 173 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL-EKR-------- 173 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH-hhC--------
Confidence 45789999999999999998853 468999999999999999865321 378999999998741 211
Q ss_pred ccCCCCceEEEecCC
Q psy17126 125 WSEGLPGIRIIGNLP 139 (240)
Q Consensus 125 ~~~~~~~~~VvsNlP 139 (240)
.+++|+||..++
T Consensus 174 ---~~~yDvIi~D~~ 185 (336)
T PLN02823 174 ---DEKFDVIIGDLA 185 (336)
T ss_pred ---CCCccEEEecCC
Confidence 146899998864
No 202
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.87 E-value=0.00013 Score=63.00 Aligned_cols=95 Identities=16% Similarity=0.210 Sum_probs=70.5
Q ss_pred HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchh
Q psy17126 41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE 119 (240)
Q Consensus 41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~ 119 (240)
..++......+..+|+|||.|+|.++..++++.+ .+++.+|+ |..++.+++ .++++++.||+. -+++. .
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~~~P~-~-- 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-DPLPV-A-- 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-TCCSS-E--
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-hhhcc-c--
Confidence 3455566777778999999999999999999864 68999998 788877775 478999999998 44443 1
Q ss_pred hhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126 120 DRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156 (240)
Q Consensus 120 ~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~ 156 (240)
..++++|.=.+-+.....++|++...
T Consensus 160 -----------D~~~l~~vLh~~~d~~~~~iL~~~~~ 185 (241)
T PF00891_consen 160 -----------DVYLLRHVLHDWSDEDCVKILRNAAA 185 (241)
T ss_dssp -----------SEEEEESSGGGS-HHHHHHHHHHHHH
T ss_pred -----------cceeeehhhhhcchHHHHHHHHHHHH
Confidence 25677888777788888888876554
No 203
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.85 E-value=8e-05 Score=67.97 Aligned_cols=118 Identities=16% Similarity=0.237 Sum_probs=74.3
Q ss_pred CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCC
Q psy17126 49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128 (240)
Q Consensus 49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~ 128 (240)
..+|.++|||||++|..|..|++++ .+|+|||..+ |.+.+. ..++|+.+.+|..++... .
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG-~~V~AVD~g~-l~~~L~-----~~~~V~h~~~d~fr~~p~-------------~ 268 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG-MFVTAVDNGP-MAQSLM-----DTGQVEHLRADGFKFRPP-------------R 268 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC-CEEEEEechh-cCHhhh-----CCCCEEEEeccCcccCCC-------------C
Confidence 3588999999999999999999996 5999999654 433332 147899999998775421 1
Q ss_pred CCceEEEecCCCC--CCHHHHHHHHHhccc--cccccchh---h--------hhHHHHHHHcCCCCCCCCCCC
Q psy17126 129 LPGIRIIGNLPFN--VSTPLIIKWIQAISE--NLLFPKHK---R--------QLVVSLLERACVKPILRPYQL 186 (240)
Q Consensus 129 ~~~~~VvsNlPY~--Iss~il~~ll~~~~~--~~~~~~~~---~--------~~~~~~l~~~gi~~~~R~e~l 186 (240)
+++|.||+.+--+ -...++.+|+...-. ..|..++- + +.....+.+.|+....|+.+|
T Consensus 269 ~~vDwvVcDmve~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~~~~~~khL 341 (357)
T PRK11760 269 KNVDWLVCDMVEKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGINAQIQAKQL 341 (357)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCccceeeeee
Confidence 3578888876321 223455666654311 11111111 1 234445667787766666443
No 204
>KOG1661|consensus
Probab=97.83 E-value=7.2e-05 Score=63.75 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=69.7
Q ss_pred cCCHHHHHHHHHHcC--CCCCCEEEEECCchhHHHHHHHhhC-C--CeEEEEeCCcchHHHHHHHHhcC-----------
Q psy17126 34 LFEPRLTDKIVRNAG--TITGNEVCEVGPGPGSITRSILNRR-P--ARLVLIEKDPRFTPCLDMLAQAS----------- 97 (240)
Q Consensus 34 l~d~~i~~~iv~~~~--~~~~~~VLEIG~GtG~lt~~La~~~-~--~~V~avEid~~m~~~l~~~~~~~----------- 97 (240)
+.-+.+...+++.+. +++|.+.||+|.|||.||..++... + ..++|||.-+++++..++++...
T Consensus 63 iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~ 142 (237)
T KOG1661|consen 63 ISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLK 142 (237)
T ss_pred EcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhc
Confidence 344778888888887 7899999999999999999888642 2 33499999999999999876542
Q ss_pred CCCeEEEEcccccccccccchhhhcccccCCCCceEEEec
Q psy17126 98 PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN 137 (240)
Q Consensus 98 ~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsN 137 (240)
..++.++.||..+.. .+..++|+|...
T Consensus 143 ~~~l~ivvGDgr~g~-------------~e~a~YDaIhvG 169 (237)
T KOG1661|consen 143 RGELSIVVGDGRKGY-------------AEQAPYDAIHVG 169 (237)
T ss_pred cCceEEEeCCccccC-------------CccCCcceEEEc
Confidence 156888888887743 222567877654
No 205
>KOG2899|consensus
Probab=97.64 E-value=6.4e-05 Score=65.42 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=42.2
Q ss_pred CCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc
Q psy17126 49 TITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA 96 (240)
Q Consensus 49 ~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~ 96 (240)
...+..+|||||-+|.+|..+++.. +..|+|+|||+.++..|+++++.
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 3456889999999999999999974 57899999999999999987653
No 206
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.61 E-value=0.00035 Score=60.78 Aligned_cols=110 Identities=13% Similarity=0.169 Sum_probs=60.1
Q ss_pred CchhhhccCccccCCHHHHHHHHHHcCC--CCCCEEEEECCchhHHHH-HHHh-hCCCeEEEEeCCcchHHHHHHHHhcC
Q psy17126 22 KLRALKQLSQNFLFEPRLTDKIVRNAGT--ITGNEVCEVGPGPGSITR-SILN-RRPARLVLIEKDPRFTPCLDMLAQAS 97 (240)
Q Consensus 22 ~~~~~k~~gQ~fl~d~~i~~~iv~~~~~--~~~~~VLEIG~GtG~lt~-~La~-~~~~~V~avEid~~m~~~l~~~~~~~ 97 (240)
...+...|.|-|.+....+.+.+=.... -.|.+||=+| -+-||. +++. ..+.+|+.+|+|.++++..++.+++.
T Consensus 13 RP~~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~ 90 (243)
T PF01861_consen 13 RPEPDVELDQGYATPETTLRRAALMAERGDLEGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEE 90 (243)
T ss_dssp -----GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH
T ss_pred CCCCccccccccccHHHHHHHHHHHHhcCcccCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc
Confidence 3467888999999988877765544332 3688999998 444442 2222 23589999999999999999877766
Q ss_pred CCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126 98 PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST 144 (240)
Q Consensus 98 ~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss 144 (240)
+-+++.++.|+.+- ++..+. +++|.++.+|||.+..
T Consensus 91 gl~i~~~~~DlR~~-LP~~~~----------~~fD~f~TDPPyT~~G 126 (243)
T PF01861_consen 91 GLPIEAVHYDLRDP-LPEELR----------GKFDVFFTDPPYTPEG 126 (243)
T ss_dssp T--EEEE---TTS----TTTS----------S-BSEEEE---SSHHH
T ss_pred CCceEEEEeccccc-CCHHHh----------cCCCEEEeCCCCCHHH
Confidence 65699999999873 443221 4799999999997754
No 207
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.55 E-value=0.00039 Score=61.18 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=53.8
Q ss_pred ccCccccCCHHHHHHHHHHcC-----CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 28 QLSQNFLFEPRLTDKIVRNAG-----TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 28 ~~gQ~fl~d~~i~~~iv~~~~-----~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
+-|..|+.+..-..+++...+ -....++||||+|.|..|..++... .+|+|.|.|+.|...+++
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~ 134 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSK 134 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHh
Confidence 458889999998888887652 1245789999999999999999875 799999999999888875
No 208
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00032 Score=62.68 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=60.3
Q ss_pred CEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcC-----CCCeEEEEcccccccccccchhhhccccc
Q psy17126 53 NEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQAS-----PCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~-----~~~v~vi~~D~~~~~~~~~~~~~~~~~~~ 126 (240)
.+||-||-|.|..++.+++.. ..+++.||+|+..++.+++..... .++++++.+|..++ +.+.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~-v~~~---------- 146 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF-LRDC---------- 146 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH-HHhC----------
Confidence 699999999999999999985 379999999999999999865432 37899999999875 2221
Q ss_pred CCCCceEEEecCC
Q psy17126 127 EGLPGIRIIGNLP 139 (240)
Q Consensus 127 ~~~~~~~VvsNlP 139 (240)
..++|+||....
T Consensus 147 -~~~fDvIi~D~t 158 (282)
T COG0421 147 -EEKFDVIIVDST 158 (282)
T ss_pred -CCcCCEEEEcCC
Confidence 135888888764
No 209
>KOG3010|consensus
Probab=97.54 E-value=9.2e-05 Score=64.32 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCCCC-CEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 37 PRLTDKIVRNAGTITG-NEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 37 ~~i~~~iv~~~~~~~~-~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
..+...|... .++ ..++|+|||+|.-++.++.. ..+|+|+|+++.|+..+++
T Consensus 21 tdw~~~ia~~---~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k 73 (261)
T KOG3010|consen 21 TDWFKKIASR---TEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKK 73 (261)
T ss_pred HHHHHHHHhh---CCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhc
Confidence 3455555544 333 38999999999777888887 4899999999999999876
No 210
>KOG2361|consensus
Probab=97.53 E-value=0.00014 Score=63.24 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=55.9
Q ss_pred ccccCCHHHHHHHHH-HcCCCCCC--EEEEECCchhHHHHHHHhhCC---CeEEEEeCCcchHHHHHHHHhcCCCCeEEE
Q psy17126 31 QNFLFEPRLTDKIVR-NAGTITGN--EVCEVGPGPGSITRSILNRRP---ARLVLIEKDPRFTPCLDMLAQASPCPVHFH 104 (240)
Q Consensus 31 Q~fl~d~~i~~~iv~-~~~~~~~~--~VLEIG~GtG~lt~~La~~~~---~~V~avEid~~m~~~l~~~~~~~~~~v~vi 104 (240)
-+|+.|++++.+=.. .+...... +|||||||-|....++++-.+ -+|+|.|.+++.++..+++......++...
T Consensus 48 ~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~af 127 (264)
T KOG2361|consen 48 NRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAF 127 (264)
T ss_pred ccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhccc
Confidence 347777776654333 33333222 799999999999999998643 589999999999999998654433555555
Q ss_pred Eccccc
Q psy17126 105 LGDVMS 110 (240)
Q Consensus 105 ~~D~~~ 110 (240)
..|+..
T Consensus 128 v~Dlt~ 133 (264)
T KOG2361|consen 128 VWDLTS 133 (264)
T ss_pred ceeccc
Confidence 555544
No 211
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.47 E-value=0.0003 Score=67.70 Aligned_cols=60 Identities=15% Similarity=0.037 Sum_probs=48.4
Q ss_pred CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMS 110 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~ 110 (240)
.+..+||||||.|.++..+|...+ ..++|||+...-+..+.......+ .|+.++.+|+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~ 408 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL 408 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence 467899999999999999999864 689999999887776655544333 689999888754
No 212
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.41 E-value=0.00026 Score=63.97 Aligned_cols=80 Identities=19% Similarity=0.266 Sum_probs=61.2
Q ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
|.+-|-+++.+++.+.+.++..++|.=-|.|.-|..+++.. .++|+|+|.|+.+++.+++++..+.+++.++++++.++
T Consensus 2 ~~H~PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 2 FYHIPVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNL 81 (310)
T ss_dssp SS---TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGH
T ss_pred CceecccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHH
Confidence 44557788899999999999999999999999999999874 38999999999999999987766678999999999875
Q ss_pred c
Q psy17126 112 T 112 (240)
Q Consensus 112 ~ 112 (240)
.
T Consensus 82 ~ 82 (310)
T PF01795_consen 82 D 82 (310)
T ss_dssp H
T ss_pred H
Confidence 4
No 213
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.40 E-value=0.00062 Score=60.79 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=71.5
Q ss_pred HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccc
Q psy17126 41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMF 117 (240)
Q Consensus 41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~ 117 (240)
...+..+.+.++..|||+++|+|.=|..++... .+.|+|+|+++.-+..++.++.+.+ .++.++..|..+......
T Consensus 75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~- 153 (283)
T PF01189_consen 75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP- 153 (283)
T ss_dssp HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH-
T ss_pred ccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc-
Confidence 334455788899999999999999999999874 3799999999999999999888776 778888888877532111
Q ss_pred hhhhcccccCCCCceEEEecCCCCC
Q psy17126 118 SEDRRRDWSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~VvsNlPY~I 142 (240)
...+|.|+...|=.-
T Consensus 154 ----------~~~fd~VlvDaPCSg 168 (283)
T PF01189_consen 154 ----------ESKFDRVLVDAPCSG 168 (283)
T ss_dssp ----------TTTEEEEEEECSCCC
T ss_pred ----------ccccchhhcCCCccc
Confidence 124789998888543
No 214
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.34 E-value=0.00095 Score=59.87 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=71.6
Q ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccc
Q psy17126 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMS 110 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~ 110 (240)
|.+-+-+++.+++.+.+.++...+|.--|-|.-+..+++..+ ++++|+|.|+.+++.+++....+.++++++++.+.+
T Consensus 5 ~~HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 5 FRHIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred CCccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 556678899999999999999999999999999999999864 689999999999999999887777899999998876
Q ss_pred cc
Q psy17126 111 FT 112 (240)
Q Consensus 111 ~~ 112 (240)
+.
T Consensus 85 l~ 86 (314)
T COG0275 85 LA 86 (314)
T ss_pred HH
Confidence 54
No 215
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.34 E-value=0.0015 Score=55.71 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=60.8
Q ss_pred EEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc-ccccccchhhhcccccCCCC
Q psy17126 55 VCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS-FTMQNMFSEDRRRDWSEGLP 130 (240)
Q Consensus 55 VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~-~~~~~~~~~~~~~~~~~~~~ 130 (240)
|+||||--|.|...|++++ +.+++|+|+++.-++.++++.+..+ ++++++.+|-++ ++..+ ..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e-------------~~ 67 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGE-------------DV 67 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCC-------------CC
Confidence 6899999999999999986 3689999999999999999877654 789999999765 22211 02
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126 131 GIRIIGNLPFNVSTPLIIKWIQAISE 156 (240)
Q Consensus 131 ~~~VvsNlPY~Iss~il~~ll~~~~~ 156 (240)
..+||+. +...++.++|+....
T Consensus 68 d~ivIAG----MGG~lI~~ILe~~~~ 89 (205)
T PF04816_consen 68 DTIVIAG----MGGELIIEILEAGPE 89 (205)
T ss_dssp -EEEEEE----E-HHHHHHHHHHTGG
T ss_pred CEEEEec----CCHHHHHHHHHhhHH
Confidence 2456665 566667777776543
No 216
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.33 E-value=0.00061 Score=59.66 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=58.9
Q ss_pred CCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhc-----CCCCeEEEEcccccccccccchhhhccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQA-----SPCPVHFHLGDVMSFTMQNMFSEDRRRD 124 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~-----~~~~v~vi~~D~~~~~~~~~~~~~~~~~ 124 (240)
+..+||=||-|.|..++.+++.. ..+|++||+|+.+++.+++.... ..++++++.+|+..+ +...
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~-l~~~-------- 146 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF-LKET-------- 146 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH-HHTS--------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH-HHhc--------
Confidence 56899999999999999999874 37999999999999999885432 137899999999774 2221
Q ss_pred ccCCC-CceEEEecCCC
Q psy17126 125 WSEGL-PGIRIIGNLPF 140 (240)
Q Consensus 125 ~~~~~-~~~~VvsNlPY 140 (240)
.. ++|+||..++-
T Consensus 147 ---~~~~yDvIi~D~~d 160 (246)
T PF01564_consen 147 ---QEEKYDVIIVDLTD 160 (246)
T ss_dssp ---SST-EEEEEEESSS
T ss_pred ---cCCcccEEEEeCCC
Confidence 12 68999987764
No 217
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.33 E-value=0.00058 Score=57.72 Aligned_cols=98 Identities=20% Similarity=0.373 Sum_probs=71.1
Q ss_pred HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchh
Q psy17126 40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE 119 (240)
Q Consensus 40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~ 119 (240)
++.+...=..-.+++|||+|+|+|-.+...+..++..|++.|+++.....++-|.+..+-.+.++..|..- +-+.
T Consensus 68 AR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~~~~---- 142 (218)
T COG3897 68 ARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-SPPA---- 142 (218)
T ss_pred HHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-CCcc----
Confidence 34454444445789999999999999999999888899999999999888887776656678888888765 2111
Q ss_pred hhcccccCCCCceEEEecCCCCCCHHH-HHHHHH
Q psy17126 120 DRRRDWSEGLPGIRIIGNLPFNVSTPL-IIKWIQ 152 (240)
Q Consensus 120 ~~~~~~~~~~~~~~VvsNlPY~Iss~i-l~~ll~ 152 (240)
-..++.|.+=|+-+-.. ++.|+.
T Consensus 143 ----------~Dl~LagDlfy~~~~a~~l~~~~~ 166 (218)
T COG3897 143 ----------FDLLLAGDLFYNHTEADRLIPWKD 166 (218)
T ss_pred ----------eeEEEeeceecCchHHHHHHHHHH
Confidence 12456777778766533 334444
No 218
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0015 Score=60.25 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=74.0
Q ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC---CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccc
Q psy17126 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP---ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDV 108 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~---~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~ 108 (240)
|.++..-....+..+++.+|.+|||.++++|.=|..++.... ..|+|+|+|+.=+..+++++++.+ .|+.+++.|.
T Consensus 138 ~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~ 217 (355)
T COG0144 138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA 217 (355)
T ss_pred EEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc
Confidence 333433344444567889999999999999999999998742 357999999999999999988877 6788999998
Q ss_pred ccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126 109 MSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I 142 (240)
..+.- .. ....++|.|+--.|=.-
T Consensus 218 ~~~~~--~~--------~~~~~fD~iLlDaPCSg 241 (355)
T COG0144 218 RRLAE--LL--------PGGEKFDRILLDAPCSG 241 (355)
T ss_pred ccccc--cc--------cccCcCcEEEECCCCCC
Confidence 76531 11 11125888988887433
No 219
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.29 E-value=0.00082 Score=57.76 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=51.4
Q ss_pred CCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc
Q psy17126 52 GNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT 112 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~ 112 (240)
+.+++|||+|.|-=+.+|+-.. ..+|+-+|....=+..++.....++ +|++++++.++++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~ 130 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG 130 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc
Confidence 5899999999999999988432 3679999999988888888766666 78999999999864
No 220
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.26 E-value=0.00063 Score=62.13 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=58.5
Q ss_pred CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC-----------CCCeEEEEcccccccccccchh
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS-----------PCPVHFHLGDVMSFTMQNMFSE 119 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~-----------~~~v~vi~~D~~~~~~~~~~~~ 119 (240)
++.+|||+|||-|.=..........+++|+|++...++.++++.... .-...++.+|.....+.+.+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 78999999999776544444444689999999999999998876211 1235678888876554443321
Q ss_pred hhcccccCCCCceEEEecC--CCCCCHHH-HHHHHHhcc
Q psy17126 120 DRRRDWSEGLPGIRIIGNL--PFNVSTPL-IIKWIQAIS 155 (240)
Q Consensus 120 ~~~~~~~~~~~~~~VvsNl--PY~Iss~i-l~~ll~~~~ 155 (240)
...++|+|-+-. =|.-.|.- ...+|....
T Consensus 142 -------~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs 173 (331)
T PF03291_consen 142 -------RSRKFDVVSCQFALHYAFESEEKARQFLKNVS 173 (331)
T ss_dssp -------TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHH
T ss_pred -------cCCCcceeehHHHHHHhcCCHHHHHHHHHHHH
Confidence 013566655543 36655554 333565544
No 221
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0018 Score=56.34 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=62.0
Q ss_pred HHHHHHHcCC-CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHH-HHHHHhcCCCCeEEEE-ccccccccccc
Q psy17126 40 TDKIVRNAGT-ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPC-LDMLAQASPCPVHFHL-GDVMSFTMQNM 116 (240)
Q Consensus 40 ~~~iv~~~~~-~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~-l~~~~~~~~~~v~vi~-~D~~~~~~~~~ 116 (240)
+.++++...+ .++..+||||+-||.+|..++++++.+|+|||.....+.. ++. .+++.++. .|+..+...++
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~~ 141 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPEDF 141 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHHc
Confidence 3445555554 3689999999999999999999988999999999876654 331 35555543 34554443332
Q ss_pred chhhhcccccCCCCceEEEecCCCCCCHHHH
Q psy17126 117 FSEDRRRDWSEGLPGIRIIGNLPFNVSTPLI 147 (240)
Q Consensus 117 ~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il 147 (240)
. +.+|.+++.+-| ||...+
T Consensus 142 ~-----------~~~d~~v~DvSF-ISL~~i 160 (245)
T COG1189 142 T-----------EKPDLIVIDVSF-ISLKLI 160 (245)
T ss_pred c-----------cCCCeEEEEeeh-hhHHHH
Confidence 1 246888888877 554443
No 222
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.23 E-value=0.0015 Score=54.91 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=54.1
Q ss_pred EEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCCCCc
Q psy17126 54 EVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131 (240)
Q Consensus 54 ~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~ 131 (240)
+++|||+|.|.=+.+|+-..+ .+|+.+|....-+..++.....++ .|++++++++.+... ...+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~--------------~~~f 116 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEY--------------RESF 116 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTT--------------TT-E
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccccc--------------CCCc
Confidence 899999999999988887543 689999999998888887666555 789999999988111 1357
Q ss_pred eEEEec
Q psy17126 132 IRIIGN 137 (240)
Q Consensus 132 ~~VvsN 137 (240)
|.|++-
T Consensus 117 d~v~aR 122 (184)
T PF02527_consen 117 DVVTAR 122 (184)
T ss_dssp EEEEEE
T ss_pred cEEEee
Confidence 888875
No 223
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.21 E-value=0.00045 Score=57.02 Aligned_cols=78 Identities=22% Similarity=0.294 Sum_probs=49.2
Q ss_pred CCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhccccc-C
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS-E 127 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~-~ 127 (240)
++.+|||+||++|.+|..++++. ..+|+|||+.+.- . ..++..+++|+.+..-.+.+.. ... .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~-~~~~~~i~~d~~~~~~~~~i~~----~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------P-LQNVSFIQGDITNPENIKDIRK----LLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S--TTEEBTTGGGEEEEHSHHGGG----SHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------c-ccceeeeecccchhhHHHhhhh----hcccc
Confidence 45899999999999999999986 4799999998771 1 1567788888865422111111 011 1
Q ss_pred CCCceEEEecCCCCC
Q psy17126 128 GLPGIRIIGNLPFNV 142 (240)
Q Consensus 128 ~~~~~~VvsNlPY~I 142 (240)
..++|.|++..-.++
T Consensus 89 ~~~~dlv~~D~~~~~ 103 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNV 103 (181)
T ss_dssp TCSESEEEE------
T ss_pred ccCcceeccccccCC
Confidence 247899999883333
No 224
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.19 E-value=0.00079 Score=59.78 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=57.0
Q ss_pred EEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceE
Q psy17126 54 EVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133 (240)
Q Consensus 54 ~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (240)
+|+|+-||.|.++..+...+...|.++|+++..++..+.+.. +. ++++|+.++...++. ..+|+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~----~~-~~~~Di~~~~~~~~~-----------~~~D~ 65 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP----NK-LIEGDITKIDEKDFI-----------PDIDL 65 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC----CC-CccCccccCchhhcC-----------CCCCE
Confidence 689999999999999988765678999999999998887642 22 678899887643321 35799
Q ss_pred EEecCCCC
Q psy17126 134 IIGNLPFN 141 (240)
Q Consensus 134 VvsNlPY~ 141 (240)
+++.+|.+
T Consensus 66 l~~gpPCq 73 (275)
T cd00315 66 LTGGFPCQ 73 (275)
T ss_pred EEeCCCCh
Confidence 99999964
No 225
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.09 E-value=0.0024 Score=58.10 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=51.3
Q ss_pred HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-----CCeEEEEeCCcchHHHHHHHHh-cCCCCeEE--EEccccc
Q psy17126 41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-----PARLVLIEKDPRFTPCLDMLAQ-ASPCPVHF--HLGDVMS 110 (240)
Q Consensus 41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-----~~~V~avEid~~m~~~l~~~~~-~~~~~v~v--i~~D~~~ 110 (240)
..|++.+ .++..++|+|||+|.=|..|++.. ..+.++||+|..+++.+.+.+. ..-+.+++ +++|+.+
T Consensus 68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 4455554 356789999999999998877643 2579999999999998887665 32255666 8998865
No 226
>KOG3115|consensus
Probab=96.99 E-value=0.0013 Score=55.92 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=51.4
Q ss_pred CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC--------CCeEEEEcccccccccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP--------CPVHFHLGDVMSFTMQNMF 117 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~--------~~v~vi~~D~~~~~~~~~~ 117 (240)
....+.|||||-|.|...|+...+ .-++|+||--...++.++++..+. .|+.+...+++++ ++++|
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~-lpn~f 134 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF-LPNFF 134 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh-ccchh
Confidence 345789999999999999998765 679999999999999888765431 5677888887775 34444
No 227
>KOG2940|consensus
Probab=96.98 E-value=0.0021 Score=55.88 Aligned_cols=75 Identities=12% Similarity=0.199 Sum_probs=57.2
Q ss_pred CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~ 130 (240)
....++|||||.|++.+.|...+..+++-+|.|-.|++.++.... ..-.+....+|-+.+++.+ ++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~i~~~~~v~DEE~Ldf~e-------------ns 137 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PSIETSYFVGDEEFLDFKE-------------NS 137 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-CceEEEEEecchhcccccc-------------cc
Confidence 456899999999999999998877899999999999988875211 0122445678888777654 46
Q ss_pred ceEEEecCC
Q psy17126 131 GIRIIGNLP 139 (240)
Q Consensus 131 ~~~VvsNlP 139 (240)
+|.|++.+-
T Consensus 138 ~DLiisSls 146 (325)
T KOG2940|consen 138 VDLIISSLS 146 (325)
T ss_pred hhhhhhhhh
Confidence 788888764
No 228
>KOG1663|consensus
Probab=96.97 E-value=0.0037 Score=54.05 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=69.3
Q ss_pred cccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcc
Q psy17126 32 NFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGD 107 (240)
Q Consensus 32 ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D 107 (240)
...+.+...+.+...+.....+++||||.=||.-+...|... .++|+++|+|+...+...+..+.. ..++++++++
T Consensus 54 ~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 54 EMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred ceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 356677766666655666677899999987777666666543 389999999999999887754433 3789999999
Q ss_pred cccccccccchhhhcccccCCCCceEEEe
Q psy17126 108 VMSFTMQNMFSEDRRRDWSEGLPGIRIIG 136 (240)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vvs 136 (240)
+.+. +.++.+.. +.+.+|.+|-
T Consensus 134 a~es-Ld~l~~~~------~~~tfDfaFv 155 (237)
T KOG1663|consen 134 ALES-LDELLADG------ESGTFDFAFV 155 (237)
T ss_pred hhhh-HHHHHhcC------CCCceeEEEE
Confidence 9874 44443321 2356777774
No 229
>PHA01634 hypothetical protein
Probab=96.94 E-value=0.0016 Score=51.63 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=42.3
Q ss_pred CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA 96 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~ 96 (240)
.+.+|+|||++.|.-++.++.+++.+|+++|.++.+.+..+++++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 5789999999999999999999889999999999999999887653
No 230
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.92 E-value=0.0042 Score=55.23 Aligned_cols=61 Identities=15% Similarity=0.255 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcC
Q psy17126 37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQAS 97 (240)
Q Consensus 37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~ 97 (240)
..++..+...++--...+|||+|+|+|+-+..+.... ..++++||.|+.|++.++......
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 3445555544433345799999999998776665532 368999999999999988876543
No 231
>KOG1501|consensus
Probab=96.89 E-value=0.0019 Score=60.60 Aligned_cols=58 Identities=9% Similarity=0.042 Sum_probs=49.0
Q ss_pred CEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEccccc
Q psy17126 53 NEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMS 110 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~ 110 (240)
..|||||+|||-|+...+..++..|||+|.=.-|...+++.....+ +++++|+.--.+
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 4689999999999999998887899999999999999998766544 788888665443
No 232
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.68 E-value=0.0039 Score=54.60 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=48.0
Q ss_pred CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
.+..+|+|||||.=-|+.+..... ...++|+|||+.+++.+.......+.+.++...|.+.-.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP 167 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC
Confidence 346899999999999999887653 369999999999999999877777778888888987653
No 233
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=96.67 E-value=0.0078 Score=57.88 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=69.2
Q ss_pred ccCccccCCHHHHHHHHHHcCCC--CCCEEEEECCchhHHHHHHHhh---C--CCeEEEEeCCcchHHHHHHHHhc--C-
Q psy17126 28 QLSQNFLFEPRLTDKIVRNAGTI--TGNEVCEVGPGPGSITRSILNR---R--PARLVLIEKDPRFTPCLDMLAQA--S- 97 (240)
Q Consensus 28 ~~gQ~fl~d~~i~~~iv~~~~~~--~~~~VLEIG~GtG~lt~~La~~---~--~~~V~avEid~~m~~~l~~~~~~--~- 97 (240)
.-|+ |.+...++.-+++.+... ++..|.|.-||+|.+....... + ...+++-|....|...+..+..- .
T Consensus 193 ~~g~-~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~ 271 (501)
T TIGR00497 193 SGGE-FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID 271 (501)
T ss_pred cCce-eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC
Confidence 3455 778888998888876543 6679999999999998654432 1 14699999999999888876421 1
Q ss_pred CCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126 98 PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 98 ~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I 142 (240)
++.+.+.++|-+.-+ + |....++|.|++|+||+.
T Consensus 272 ~~t~~~~~~dtl~~~--d---------~~~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 272 YANFNIINADTLTTK--E---------WENENGFEVVVSNPPYSI 305 (501)
T ss_pred ccccCcccCCcCCCc--c---------ccccccCCEEeecCCccc
Confidence 123444455544321 1 111125799999999975
No 234
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.54 E-value=0.074 Score=47.76 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=50.8
Q ss_pred CCCCEEEEECCchhHHHHHHHhhCC---CeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccc
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRRP---ARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSF 111 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~~---~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~ 111 (240)
...-+||||.||.|..-...+...+ .+|.-.|.++..++..++.+++.+ +-++|.++|+.+.
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence 3557999999999999887777543 689999999999999998776644 4459999998764
No 235
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.45 E-value=0.008 Score=51.66 Aligned_cols=93 Identities=14% Similarity=0.072 Sum_probs=57.1
Q ss_pred CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCC-eEEEEcccccccccccchhhhcccccCCC
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~-v~vi~~D~~~~~~~~~~~~~~~~~~~~~~ 129 (240)
...++||.|+|.|..|..++.....+|..||..+.+++.+++......++ .++++.-..++..+ .+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~-------------~~ 121 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE-------------EG 121 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----------------TT
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC-------------CC
Confidence 45799999999999999887655689999999999999999754331122 45566655554332 13
Q ss_pred CceEEEecCC-CCCCHHHHHHHHHhccc
Q psy17126 130 PGIRIIGNLP-FNVSTPLIIKWIQAISE 156 (240)
Q Consensus 130 ~~~~VvsNlP-Y~Iss~il~~ll~~~~~ 156 (240)
++|+|-..== =+.|...+..+|.+...
T Consensus 122 ~YDlIW~QW~lghLTD~dlv~fL~RCk~ 149 (218)
T PF05891_consen 122 KYDLIWIQWCLGHLTDEDLVAFLKRCKQ 149 (218)
T ss_dssp -EEEEEEES-GGGS-HHHHHHHHHHHHH
T ss_pred cEeEEEehHhhccCCHHHHHHHHHHHHH
Confidence 5676543211 13677778888887654
No 236
>KOG4058|consensus
Probab=96.40 E-value=0.005 Score=50.10 Aligned_cols=78 Identities=13% Similarity=0.200 Sum_probs=60.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHH--hcCCCCeEEEEccccccccccc
Q psy17126 39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLA--QASPCPVHFHLGDVMSFTMQNM 116 (240)
Q Consensus 39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~--~~~~~~v~vi~~D~~~~~~~~~ 116 (240)
-++.+++.+.-.+..+.+|+|+|.|.+....++.+...-+|+|+++-++.+.+-.+ ........+...|.-++++.+.
T Consensus 60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 34556666666666789999999999999988876578999999999998776532 2334678888899998887664
No 237
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.012 Score=50.19 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=56.5
Q ss_pred CCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhccccc
Q psy17126 49 TITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126 (240)
Q Consensus 49 ~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~ 126 (240)
+.++..|+|+|+-+|.-+..+++... ..|+|||++|-- ...++.++++|+..-+..+...+. .
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------~~~~V~~iq~d~~~~~~~~~l~~~-----l 107 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------PIPGVIFLQGDITDEDTLEKLLEA-----L 107 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------cCCCceEEeeeccCccHHHHHHHH-----c
Confidence 35789999999999999999998753 359999998742 125699999999876533221110 1
Q ss_pred CCCCceEEEecCCCCCCH
Q psy17126 127 EGLPGIRIIGNLPFNVST 144 (240)
Q Consensus 127 ~~~~~~~VvsNlPY~Iss 144 (240)
+..+.|+|+|.+--+++.
T Consensus 108 ~~~~~DvV~sD~ap~~~g 125 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSG 125 (205)
T ss_pred CCCCcceEEecCCCCcCC
Confidence 113458999876555543
No 238
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.39 E-value=0.0059 Score=54.22 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=56.9
Q ss_pred EEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceE
Q psy17126 54 EVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIR 133 (240)
Q Consensus 54 ~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (240)
+|+|+=||.|.++..+...+...|.|+|+|+..++..+.|.. .+..+|+.+++...+ +. ..|+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~~l-~~----------~~D~ 64 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP------EVICGDITEIDPSDL-PK----------DVDL 64 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHHHH-HH----------T-SE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc------ccccccccccccccc-cc----------cceE
Confidence 689999999999999988865689999999999998887652 789999999876543 10 3689
Q ss_pred EEecCC---CCCCH
Q psy17126 134 IIGNLP---FNVST 144 (240)
Q Consensus 134 VvsNlP---Y~Iss 144 (240)
+++.+| |+...
T Consensus 65 l~ggpPCQ~fS~ag 78 (335)
T PF00145_consen 65 LIGGPPCQGFSIAG 78 (335)
T ss_dssp EEEE---TTTSTTS
T ss_pred EEeccCCceEeccc
Confidence 999998 66554
No 239
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.33 E-value=0.021 Score=48.66 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCe-EEEEcccccc
Q psy17126 35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPV-HFHLGDVMSF 111 (240)
Q Consensus 35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v-~vi~~D~~~~ 111 (240)
-++.-+-.+++..-...+.+|||||||||--+..++...+ .+-.--|.++......+......+ +|+ .-+.-|+.+-
T Consensus 9 RNk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 9 RNKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP 88 (204)
T ss_pred hCHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC
Confidence 3444344444443223334699999999999999999864 567778888888666655444332 332 2344555543
No 240
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.29 E-value=0.012 Score=49.24 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=44.3
Q ss_pred cCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 34 LFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 34 l~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
-.+..+++++++... .+|+.|||.=||+|+.+.+..+.+ .+.+|+|+++..++.+++
T Consensus 175 ~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHHHHhcC
Confidence 345678999998875 578999999999999988888774 799999999999988763
No 241
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.25 E-value=0.066 Score=46.13 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=69.6
Q ss_pred HHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccch
Q psy17126 42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFS 118 (240)
Q Consensus 42 ~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~ 118 (240)
.+++.+. .+.++.||||--|.|+..|.+.+ +.++++.|+++.-++.+.++....+ +++++..+|-+.. +..
T Consensus 9 ~va~~V~--~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~-l~~--- 82 (226)
T COG2384 9 TVANLVK--QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAV-LEL--- 82 (226)
T ss_pred HHHHHHH--cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccc-cCc---
Confidence 3444443 45569999999999999999875 4799999999999999988776543 7789999998542 211
Q ss_pred hhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126 119 EDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~ 156 (240)
+ ......||+. +...+|..+|++...
T Consensus 83 ~--------d~~d~ivIAG----MGG~lI~~ILee~~~ 108 (226)
T COG2384 83 E--------DEIDVIVIAG----MGGTLIREILEEGKE 108 (226)
T ss_pred c--------CCcCEEEEeC----CcHHHHHHHHHHhhh
Confidence 0 0123456665 567777777776654
No 242
>KOG3987|consensus
Probab=96.22 E-value=0.0017 Score=55.57 Aligned_cols=73 Identities=15% Similarity=0.167 Sum_probs=58.7
Q ss_pred HHhCchhhhccCccccCCHHHHHHHHHHcCC---CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGT---ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 19 ~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~---~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
.+-.+.---..|..|+.+++-.++++..-+. +...++||+|+|.|-+|..++... .+|+|.|.|..|...+++
T Consensus 77 s~TdING~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 77 SQTDINGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKK 152 (288)
T ss_pred hhhccccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhh
Confidence 3344444455788899999999998876543 234799999999999999998874 689999999999999876
No 243
>PRK00536 speE spermidine synthase; Provisional
Probab=96.21 E-value=0.026 Score=49.99 Aligned_cols=100 Identities=8% Similarity=0.001 Sum_probs=67.4
Q ss_pred hhhccCccccCC--------HHHHHHHHHHcC---CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHH
Q psy17126 25 ALKQLSQNFLFE--------PRLTDKIVRNAG---TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDML 93 (240)
Q Consensus 25 ~~k~~gQ~fl~d--------~~i~~~iv~~~~---~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~ 93 (240)
-...||....+| ..+-..++.+.. ....++||=||-|-|...+.++++. .+|+-||||+.+++.+++.
T Consensus 35 es~~fGr~LvLD~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~ 113 (262)
T PRK00536 35 KSKDFGEIAMLNKQLLFKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISF 113 (262)
T ss_pred EccccccEEEEeeeeeecchhhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHH
Confidence 344566666555 224444444432 2345899999999999999999984 6999999999999999883
Q ss_pred Hh----cC-CCCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCC
Q psy17126 94 AQ----AS-PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN 141 (240)
Q Consensus 94 ~~----~~-~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~ 141 (240)
.. .+ +++++++.. + .+.. .+++|+||.-..|.
T Consensus 114 lP~~~~~~~DpRv~l~~~-~-----~~~~----------~~~fDVIIvDs~~~ 150 (262)
T PRK00536 114 FPHFHEVKNNKNFTHAKQ-L-----LDLD----------IKKYDLIICLQEPD 150 (262)
T ss_pred CHHHHHhhcCCCEEEeeh-h-----hhcc----------CCcCCEEEEcCCCC
Confidence 32 22 378888751 1 1100 13688888885543
No 244
>PRK11524 putative methyltransferase; Provisional
Probab=96.16 E-value=0.018 Score=51.32 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh
Q psy17126 37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ 95 (240)
Q Consensus 37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~ 95 (240)
..+++.+++... .+|+.|||.=+|+|+.+.+..+. ..+.+|+|++++-++.+++++.
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHH
Confidence 468888888765 58999999999999998887776 4899999999999999988764
No 245
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.02 E-value=0.02 Score=52.97 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=60.3
Q ss_pred CCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHH--Hh-----cC-CCCeEEEEcccccccccccchhh
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDML--AQ-----AS-PCPVHFHLGDVMSFTMQNMFSED 120 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~--~~-----~~-~~~v~vi~~D~~~~~~~~~~~~~ 120 (240)
+...+||=+|-|.|--.+.+++.. ..+|+-||+||+|++.++++ .. .+ +++++++..|+.++- ..-
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wl-r~a---- 362 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWL-RTA---- 362 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHH-Hhh----
Confidence 456789999999999999999874 47999999999999998842 11 11 378999999998752 111
Q ss_pred hcccccCCCCceEEEecCC
Q psy17126 121 RRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 121 ~~~~~~~~~~~~~VvsNlP 139 (240)
...+|.||-.+|
T Consensus 363 -------~~~fD~vIVDl~ 374 (508)
T COG4262 363 -------ADMFDVVIVDLP 374 (508)
T ss_pred -------cccccEEEEeCC
Confidence 136888888887
No 246
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.98 E-value=0.028 Score=41.52 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=38.3
Q ss_pred EEEECCchhHHHHHHHhhCC--CeEEEEeCCcchHHHHHHHHhcCCCC-eEEEEccccc
Q psy17126 55 VCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMS 110 (240)
Q Consensus 55 VLEIG~GtG~lt~~La~~~~--~~V~avEid~~m~~~l~~~~~~~~~~-v~vi~~D~~~ 110 (240)
++|+|||+|..+ .++.... ..++++|+++.++...+......... +.++.+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence 999999999977 3443322 38999999999998855433221111 6788888776
No 247
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.98 E-value=0.0087 Score=53.29 Aligned_cols=118 Identities=16% Similarity=0.280 Sum_probs=83.1
Q ss_pred HHHHHHHhC------chhhhccCccccCCHHHHHHHHHHc--CCCCCCEEEEECCchhHHH-HHHHhh-CCCeEEEEeCC
Q psy17126 14 IRDIIKLYK------LRALKQLSQNFLFEPRLTDKIVRNA--GTITGNEVCEVGPGPGSIT-RSILNR-RPARLVLIEKD 83 (240)
Q Consensus 14 ~~~~~~~~~------~~~~k~~gQ~fl~d~~i~~~iv~~~--~~~~~~~VLEIG~GtG~lt-~~La~~-~~~~V~avEid 83 (240)
-+++++++. ..+...|.|-|.+....+.+++-.- +--.|..|+=+| --.|| .+++-. .+.+|..||+|
T Consensus 107 f~dll~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDID 184 (354)
T COG1568 107 FKDLLEKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG--DDDLTSIALALTGMPKRIAVVDID 184 (354)
T ss_pred HHHHHHHHHHHHhcCCCcchhcccccccccceeeeeeeeccccCcCCCeEEEEc--CchhhHHHHHhcCCCceEEEEech
Confidence 455665543 4466779999999988776653221 223678899999 44454 333332 26899999999
Q ss_pred cchHHHHHHHHhcCC-CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCCH
Q psy17126 84 PRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVST 144 (240)
Q Consensus 84 ~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss 144 (240)
.+++....+.+++.+ +|++.+.-|..+- +++.+. .+||+++..||+.+..
T Consensus 185 ERli~fi~k~aee~g~~~ie~~~~Dlr~p-lpe~~~----------~kFDvfiTDPpeTi~a 235 (354)
T COG1568 185 ERLIKFIEKVAEELGYNNIEAFVFDLRNP-LPEDLK----------RKFDVFITDPPETIKA 235 (354)
T ss_pred HHHHHHHHHHHHHhCccchhheeehhccc-ChHHHH----------hhCCeeecCchhhHHH
Confidence 999999888777766 6799998898873 444332 3689999999997754
No 248
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.97 E-value=0.041 Score=47.98 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=34.2
Q ss_pred CCEEEEECCchhHHHHHHHhhC---------CCeEEEEeCCcchHHHHHHHHhc
Q psy17126 52 GNEVCEVGPGPGSITRSILNRR---------PARLVLIEKDPRFTPCLDMLAQA 96 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~---------~~~V~avEid~~m~~~l~~~~~~ 96 (240)
.-+|+|+|+|+|.|+.-++... ..+++-||+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3699999999999999888642 14799999999998887776543
No 249
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.90 E-value=0.047 Score=49.01 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=41.0
Q ss_pred ccCCHHHHHHHHHHcCC-CCCCEEEEECCchhH----HHHHHHhhC-----CCeEEEEeCCcchHHHHHH
Q psy17126 33 FLFEPRLTDKIVRNAGT-ITGNEVCEVGPGPGS----ITRSILNRR-----PARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~-~~~~~VLEIG~GtG~----lt~~La~~~-----~~~V~avEid~~m~~~l~~ 92 (240)
|.-|+...+.+.+.+.. ...-+|+..||.||- +++.+.+.. ..+|+|+|+|+.+++.|++
T Consensus 96 FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~ 165 (287)
T PRK10611 96 FFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS 165 (287)
T ss_pred ccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh
Confidence 66666655555544321 123699999999994 444444421 2479999999999999987
No 250
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.89 E-value=0.012 Score=53.35 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=52.3
Q ss_pred EEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceEE
Q psy17126 55 VCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRI 134 (240)
Q Consensus 55 VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~V 134 (240)
|+|+-||.|.++..+...+..-+.++|+|+..++..+.+.. + .++++|+.+++..++ ...|++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~---~--~~~~~Di~~~~~~~~------------~~~dvl 63 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG---N--KVPFGDITKISPSDI------------PDFDIL 63 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC---C--CCCccChhhhhhhhC------------CCcCEE
Confidence 68999999999999987764456789999999998887542 2 566789988765432 236888
Q ss_pred EecCC
Q psy17126 135 IGNLP 139 (240)
Q Consensus 135 vsNlP 139 (240)
++.+|
T Consensus 64 ~gg~P 68 (315)
T TIGR00675 64 LGGFP 68 (315)
T ss_pred EecCC
Confidence 88887
No 251
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.88 E-value=0.045 Score=47.30 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=60.7
Q ss_pred HHHHHHHHH---cCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 38 RLTDKIVRN---AGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 38 ~i~~~iv~~---~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
.++..|+.- +.+.+|.+||=+|+.+|+....++... .+.|+|||.+++...-+-..++. .+|+--+.+|+....
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-R~NIiPIl~DAr~P~ 135 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-RPNIIPILEDARHPE 135 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-STTEEEEES-TTSGG
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-CCceeeeeccCCChH
Confidence 455556543 456799999999999999999998862 36999999999877666554443 478999999998632
Q ss_pred -ccccchhhhcccccCCCCceEEEecCC
Q psy17126 113 -MQNMFSEDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 113 -~~~~~~~~~~~~~~~~~~~~~VvsNlP 139 (240)
+..+. +..|.|++...
T Consensus 136 ~Y~~lv-----------~~VDvI~~DVa 152 (229)
T PF01269_consen 136 KYRMLV-----------EMVDVIFQDVA 152 (229)
T ss_dssp GGTTTS-------------EEEEEEE-S
T ss_pred Hhhccc-----------ccccEEEecCC
Confidence 11222 35799999855
No 252
>KOG1975|consensus
Probab=95.87 E-value=0.014 Score=53.08 Aligned_cols=68 Identities=12% Similarity=0.075 Sum_probs=51.4
Q ss_pred CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCC-------CCeEEEEcccccccccccc
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-------CPVHFHLGDVMSFTMQNMF 117 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~-------~~v~vi~~D~~~~~~~~~~ 117 (240)
.+++.++++|||-|.=.+..-+.+...++|+||....++.++++..... -.+.++.+|-....+.+++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL 190 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc
Confidence 5788999999999887776666656899999999999999988654321 1367888887665554443
No 253
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.75 E-value=0.032 Score=47.86 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCCC-CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126 39 LTDKIVRNAGTIT-GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF 117 (240)
Q Consensus 39 i~~~iv~~~~~~~-~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~ 117 (240)
-++.|++++.-.+ +..|.|+|||.+.++..+... .+|+..|+-.. .+ .|+.+|+.++|+++
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~--~~V~SfDLva~------------n~--~Vtacdia~vPL~~-- 120 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK--HKVHSFDLVAP------------NP--RVTACDIANVPLED-- 120 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S------------ST--TEEES-TTS-S--T--
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC--ceEEEeeccCC------------CC--CEEEecCccCcCCC--
Confidence 4677888876544 578999999999999776432 47999998632 12 37789999999865
Q ss_pred hhhhcccccCCCCceEEEecCCC
Q psy17126 118 SEDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~VvsNlPY 140 (240)
+..|++|-.|-.
T Consensus 121 -----------~svDv~VfcLSL 132 (219)
T PF05148_consen 121 -----------ESVDVAVFCLSL 132 (219)
T ss_dssp -----------T-EEEEEEES--
T ss_pred -----------CceeEEEEEhhh
Confidence 357888888765
No 254
>KOG2912|consensus
Probab=95.73 E-value=0.028 Score=50.97 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=60.8
Q ss_pred HHHHHHHHcCCCCCCEE--EEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccc
Q psy17126 39 LTDKIVRNAGTITGNEV--CEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTM 113 (240)
Q Consensus 39 i~~~iv~~~~~~~~~~V--LEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~ 113 (240)
+++.++..-....+..+ +|||.|.-.+--.+-.+. .-..+|+|+|....+.++.+....+ ..+.+|+-...+.-+
T Consensus 88 wI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll 167 (419)
T KOG2912|consen 88 WIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLL 167 (419)
T ss_pred HHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcc
Confidence 34445544433333332 688887776654443332 3578999999999999998765433 567787776554434
Q ss_pred cccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126 114 QNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143 (240)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is 143 (240)
.+.... .....|+.|.+||||+-.
T Consensus 168 ~d~~~~------~~e~~ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 168 MDALKE------ESEIIYDFCMCNPPFFEN 191 (419)
T ss_pred hhhhcc------CccceeeEEecCCchhhc
Confidence 332211 011358999999998655
No 255
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.04 Score=50.73 Aligned_cols=71 Identities=20% Similarity=0.385 Sum_probs=49.1
Q ss_pred hhccCcc--ccCCHHHHH--------HHHHH---cCCCCCCEEEEECCchhHHHHHHHhhC---------CCeEEEEeCC
Q psy17126 26 LKQLSQN--FLFEPRLTD--------KIVRN---AGTITGNEVCEVGPGPGSITRSILNRR---------PARLVLIEKD 83 (240)
Q Consensus 26 ~k~~gQ~--fl~d~~i~~--------~iv~~---~~~~~~~~VLEIG~GtG~lt~~La~~~---------~~~V~avEid 83 (240)
+.++|+. |++.+.+-+ .+++. .+....-.++|||+|+|.|..-+++.. ..++.-||+|
T Consensus 39 ~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s 118 (370)
T COG1565 39 AVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPS 118 (370)
T ss_pred chhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecC
Confidence 3445554 888887533 33332 233234579999999999998877642 3689999999
Q ss_pred cchHHHHHHHHhc
Q psy17126 84 PRFTPCLDMLAQA 96 (240)
Q Consensus 84 ~~m~~~l~~~~~~ 96 (240)
+++...=+++++.
T Consensus 119 ~~L~~~Qk~~L~~ 131 (370)
T COG1565 119 PELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHHHhc
Confidence 9998876666654
No 256
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.46 E-value=0.042 Score=47.87 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=57.1
Q ss_pred CCCEEEEECCchhHHHHHHHhh-CCCeEEEEeCCcchHHHHHHHHhcCC---CCeEEEEcccccccccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDMLAQASP---CPVHFHLGDVMSFTMQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~-~~~~V~avEid~~m~~~l~~~~~~~~---~~v~vi~~D~~~~~~~~~~~~~~~~~~~ 126 (240)
++-++||||.|--.+--.+-.+ ++-+.+|-|+|+..++.++.+....+ ..+++....=..-=|+.+ |.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~gi--------ig 149 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGI--------IG 149 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccc--------cc
Confidence 5578899999876664333322 23589999999999999988765431 345554332222112322 22
Q ss_pred CCCCceEEEecCCCCCCHHHH
Q psy17126 127 EGLPGIRIIGNLPFNVSTPLI 147 (240)
Q Consensus 127 ~~~~~~~VvsNlPY~Iss~il 147 (240)
..+.+|.+.+||||+-+...-
T Consensus 150 ~nE~yd~tlCNPPFh~s~~da 170 (292)
T COG3129 150 KNERYDATLCNPPFHDSAADA 170 (292)
T ss_pred ccceeeeEecCCCcchhHHHH
Confidence 235799999999998876554
No 257
>PRK13699 putative methylase; Provisional
Probab=95.45 E-value=0.057 Score=46.70 Aligned_cols=59 Identities=15% Similarity=0.066 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc
Q psy17126 36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA 96 (240)
Q Consensus 36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~ 96 (240)
+..+++.+++... .+|+.|||.=||+|+......+. ..+.+|+|+++...+.+.++...
T Consensus 149 P~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 149 PVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred cHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHH
Confidence 4567888887654 47899999999999998888776 47999999999999998876643
No 258
>KOG2651|consensus
Probab=95.39 E-value=0.044 Score=50.81 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=37.2
Q ss_pred CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
.+-+.|+|+|+|.|.|++.++-...-.|.|||-|..+.+.+++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 3457899999999999999988766799999999988887765
No 259
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=95.34 E-value=0.024 Score=46.13 Aligned_cols=48 Identities=4% Similarity=-0.040 Sum_probs=36.3
Q ss_pred EEEeCCcchHHHHHHHHhcC----CCCeEEEEcccccccccccchhhhcccccCCCCceEEEecC
Q psy17126 78 VLIEKDPRFTPCLDMLAQAS----PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138 (240)
Q Consensus 78 ~avEid~~m~~~l~~~~~~~----~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNl 138 (240)
+|+|+|++|++.++++.... ..+++++++|+.++++++ +.+|.|+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-------------~~fD~v~~~~ 52 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD-------------CEFDAVTMGY 52 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC-------------CCeeEEEecc
Confidence 58999999999997654321 247999999999987543 3578888764
No 260
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.59 E-value=0.06 Score=46.38 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=38.3
Q ss_pred HHHHHHHHc----CCCCCCEEEEECCchhHHHHHHHh--hC-CCeEEEEeCCcchHHHHHHHHh
Q psy17126 39 LTDKIVRNA----GTITGNEVCEVGPGPGSITRSILN--RR-PARLVLIEKDPRFTPCLDMLAQ 95 (240)
Q Consensus 39 i~~~iv~~~----~~~~~~~VLEIG~GtG~lt~~La~--~~-~~~V~avEid~~m~~~l~~~~~ 95 (240)
++..|.+.+ .-...-++.|.+||+|.|...+.- .. -..|+|-|+|+++++.+++|+.
T Consensus 35 LAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 35 LASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 445555543 223457899999999999755543 21 1689999999999999998763
No 261
>KOG2078|consensus
Probab=94.48 E-value=0.018 Score=53.96 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=66.6
Q ss_pred HHhCchhhhccCccccCCHHHH--HHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc
Q psy17126 19 KLYKLRALKQLSQNFLFEPRLT--DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA 96 (240)
Q Consensus 19 ~~~~~~~~k~~gQ~fl~d~~i~--~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~ 96 (240)
+..+...+-.||.-|.-.+.-. .++.. -.++|..|.|+-||-|-++.+++..+ ++|+|-|++++++++++.++..
T Consensus 217 re~~~~Fk~DfskVYWnsRL~~Eherlsg--~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~l 293 (495)
T KOG2078|consen 217 REGGERFKFDFSKVYWNSRLSHEHERLSG--LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKL 293 (495)
T ss_pred ecCCeeEEEecceEEeeccchhHHHHHhh--ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccc
Confidence 4566666777777664433222 22222 34689999999999999999999986 7999999999999999987643
Q ss_pred C--C-CCeEEEEcccccc
Q psy17126 97 S--P-CPVHFHLGDVMSF 111 (240)
Q Consensus 97 ~--~-~~v~vi~~D~~~~ 111 (240)
. . .++.+++.|+-.+
T Consensus 294 Nkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 294 NKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cccchhheeeecccHHHH
Confidence 2 1 4588888887553
No 262
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=94.41 E-value=0.26 Score=43.63 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC------CCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccc
Q psy17126 38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR------PARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVM 109 (240)
Q Consensus 38 ~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~------~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~ 109 (240)
.++..|-+.--+.++..++|.|||.|.|+..++... ...++.||....=. .......... ..++=+..|+.
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~ 83 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIK 83 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEee
Confidence 344545444445677899999999999999999864 24789999854211 2222222222 35777889999
Q ss_pred cccccccc
Q psy17126 110 SFTMQNMF 117 (240)
Q Consensus 110 ~~~~~~~~ 117 (240)
++++..+.
T Consensus 84 dl~l~~~~ 91 (259)
T PF05206_consen 84 DLDLSKLP 91 (259)
T ss_pred ccchhhcc
Confidence 99987654
No 263
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.31 E-value=0.06 Score=46.91 Aligned_cols=86 Identities=14% Similarity=0.205 Sum_probs=52.4
Q ss_pred HHHHHcCCCCC--CEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh---cCC-------CCeEEEEcccc
Q psy17126 42 KIVRNAGTITG--NEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ---ASP-------CPVHFHLGDVM 109 (240)
Q Consensus 42 ~iv~~~~~~~~--~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~---~~~-------~~v~vi~~D~~ 109 (240)
.++++++++++ .+|||.=+|.|.=+..++..| ++|+++|.+|-+...++.-++ ... .+++++++|..
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~ 142 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLG-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL 142 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccC-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence 47777887776 499999999999999999875 699999999988877765221 111 37999999998
Q ss_pred cccccccchhhhcccccCCCCceEEEecCCC
Q psy17126 110 SFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY 140 (240)
++ +. . + ...+|+|.-.|=|
T Consensus 143 ~~-L~-~-~---------~~s~DVVY~DPMF 161 (234)
T PF04445_consen 143 EY-LR-Q-P---------DNSFDVVYFDPMF 161 (234)
T ss_dssp CH-CC-C-H---------SS--SEEEE--S-
T ss_pred HH-Hh-h-c---------CCCCCEEEECCCC
Confidence 74 22 1 1 1357888776544
No 264
>KOG0822|consensus
Probab=93.97 E-value=0.12 Score=49.83 Aligned_cols=78 Identities=14% Similarity=0.203 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCCC---CCEEEEECCchhHHHHHHHhhC-----CCeEEEEeCCcchHHHHHH-HHhcCCCCeEEEEcc
Q psy17126 37 PRLTDKIVRNAGTIT---GNEVCEVGPGPGSITRSILNRR-----PARLVLIEKDPRFTPCLDM-LAQASPCPVHFHLGD 107 (240)
Q Consensus 37 ~~i~~~iv~~~~~~~---~~~VLEIG~GtG~lt~~La~~~-----~~~V~avEid~~m~~~l~~-~~~~~~~~v~vi~~D 107 (240)
..+...++..+.-.. ...|+=+|+|-|-|....++.. ..+++|||.+|..+-.++. +.+...++|+++.+|
T Consensus 350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~D 429 (649)
T KOG0822|consen 350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSD 429 (649)
T ss_pred HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEecc
Confidence 345555655543222 3467889999999987666531 2579999999999988876 334445889999999
Q ss_pred ccccccc
Q psy17126 108 VMSFTMQ 114 (240)
Q Consensus 108 ~~~~~~~ 114 (240)
+.+++.+
T Consensus 430 MR~w~ap 436 (649)
T KOG0822|consen 430 MRKWNAP 436 (649)
T ss_pred ccccCCc
Confidence 9998744
No 265
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.96 E-value=0.14 Score=46.58 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=59.0
Q ss_pred CEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCce
Q psy17126 53 NEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (240)
-+++|+=||.|.+...+...+..-+.++|+|+..++..+.+.. .-.++++|+.++....+.. ...|
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~----~~~~~~~di~~~~~~~~~~----------~~~D 69 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP----HGDIILGDIKELDGEALRK----------SDVD 69 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC----CCceeechHhhcChhhccc----------cCCC
Confidence 5799999999999999988765678999999999988886542 2457778888766544210 1578
Q ss_pred EEEecCC---CCCCH
Q psy17126 133 RIIGNLP---FNVST 144 (240)
Q Consensus 133 ~VvsNlP---Y~Iss 144 (240)
++++.+| |++..
T Consensus 70 vligGpPCQ~FS~aG 84 (328)
T COG0270 70 VLIGGPPCQDFSIAG 84 (328)
T ss_pred EEEeCCCCcchhhcC
Confidence 9999998 65553
No 266
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.95 E-value=0.14 Score=43.71 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=71.8
Q ss_pred HHHHHHHHH---cCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-
Q psy17126 38 RLTDKIVRN---AGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT- 112 (240)
Q Consensus 38 ~i~~~iv~~---~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~- 112 (240)
.++..|+.- +++.+|++||=+|+-+|+....++...+ +.++|||.++++..-+-..+.. .+|+--+.+|+....
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-R~Ni~PIL~DA~~P~~ 138 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-RPNIIPILEDARKPEK 138 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-CCCceeeecccCCcHH
Confidence 356666654 3578999999999999999999988643 7899999999988776655543 478888999997632
Q ss_pred ccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhc
Q psy17126 113 MQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAI 154 (240)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~ 154 (240)
+..+. +..|.|+.. |+.|-=.+++...
T Consensus 139 Y~~~V-----------e~VDviy~D----VAQp~Qa~I~~~N 165 (231)
T COG1889 139 YRHLV-----------EKVDVIYQD----VAQPNQAEILADN 165 (231)
T ss_pred hhhhc-----------ccccEEEEe----cCCchHHHHHHHH
Confidence 11222 246778776 6666655555444
No 267
>KOG3045|consensus
Probab=93.78 E-value=0.14 Score=45.50 Aligned_cols=111 Identities=11% Similarity=0.083 Sum_probs=68.0
Q ss_pred HHHHHHHHcCCCC-CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccc
Q psy17126 39 LTDKIVRNAGTIT-GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF 117 (240)
Q Consensus 39 i~~~iv~~~~~~~-~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~ 117 (240)
-++.|++.+...+ ...|.|+|||-+.++. .. ...|+.+|+-+ .|=+|+.+|+.++++++
T Consensus 167 Pld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a--------------~~~~V~~cDm~~vPl~d-- 226 (325)
T KOG3045|consen 167 PLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA--------------VNERVIACDMRNVPLED-- 226 (325)
T ss_pred hHHHHHHHHHhCcCceEEEecccchhhhhh---cc-ccceeeeeeec--------------CCCceeeccccCCcCcc--
Confidence 3667777776655 4678899999998876 22 35899888742 23457889999999876
Q ss_pred hhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc--------cccccchh--h-hhHHHHHHHcCCCCCCC
Q psy17126 118 SEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE--------NLLFPKHK--R-QLVVSLLERACVKPILR 182 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~--------~~~~~~~~--~-~~~~~~l~~~gi~~~~R 182 (240)
.+.|++|-.|-...+. +..++..+.. |.+++... . ...-+.+..+|.+-.-+
T Consensus 227 -----------~svDvaV~CLSLMgtn--~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 227 -----------ESVDVAVFCLSLMGTN--LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred -----------CcccEEEeeHhhhccc--HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence 3567777776543332 2333333221 33333211 1 22445588888776554
No 268
>KOG3924|consensus
Probab=93.75 E-value=0.14 Score=47.77 Aligned_cols=93 Identities=12% Similarity=0.090 Sum_probs=68.1
Q ss_pred HHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHHh--
Q psy17126 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLAQ-- 95 (240)
Q Consensus 19 ~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~~-- 95 (240)
+.|.-.....||- +.++-+..+++.+.+.+++...|+|.|-|.+...++..+ +..-+|+|+.....+.+..+..
T Consensus 163 ~hYk~~ss~~YGE---~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~ 239 (419)
T KOG3924|consen 163 QHYKSFSSETYGE---TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEF 239 (419)
T ss_pred Hhhccccccchhh---hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHH
Confidence 3555555556665 366778889999999999999999999999998877653 4677899998776665544221
Q ss_pred -----cCC---CCeEEEEccccccccc
Q psy17126 96 -----ASP---CPVHFHLGDVMSFTMQ 114 (240)
Q Consensus 96 -----~~~---~~v~vi~~D~~~~~~~ 114 (240)
.++ ..+..+++++..-+.-
T Consensus 240 kk~~k~fGk~~~~~~~i~gsf~~~~~v 266 (419)
T KOG3924|consen 240 KKLMKHFGKKPNKIETIHGSFLDPKRV 266 (419)
T ss_pred HHHHHHhCCCcCceeecccccCCHHHH
Confidence 122 5588999999876543
No 269
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.67 E-value=1 Score=37.00 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=66.6
Q ss_pred cCccccCCHHHHHHHHHHcCC--CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEc
Q psy17126 29 LSQNFLFEPRLTDKIVRNAGT--ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLG 106 (240)
Q Consensus 29 ~gQ~fl~d~~i~~~iv~~~~~--~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~ 106 (240)
+.| |.-+...++.+++.+.- .++.+|+=|||=+-.....-......+++.+|+|.++.. ++++ +++.-
T Consensus 2 lsQ-fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~--------~~~~-~F~fy 71 (162)
T PF10237_consen 2 LSQ-FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ--------FGGD-EFVFY 71 (162)
T ss_pred ccc-cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh--------cCCc-ceEEC
Confidence 457 66677777777766532 456799999998776665541222368999999988753 2334 45555
Q ss_pred ccccccccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHH
Q psy17126 107 DVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQ 152 (240)
Q Consensus 107 D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~ 152 (240)
|..+- ..++. .+ .+++|+||.-||| ++.+.+.+...
T Consensus 72 D~~~p---~~~~~----~l--~~~~d~vv~DPPF-l~~ec~~k~a~ 107 (162)
T PF10237_consen 72 DYNEP---EELPE----EL--KGKFDVVVIDPPF-LSEECLTKTAE 107 (162)
T ss_pred CCCCh---hhhhh----hc--CCCceEEEECCCC-CCHHHHHHHHH
Confidence 55442 11111 12 2478999999999 87777755544
No 270
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.52 E-value=0.47 Score=42.35 Aligned_cols=60 Identities=27% Similarity=0.362 Sum_probs=40.6
Q ss_pred CEEEEECCchhHHHHHHHhh--C-CCeEEEEeCCcchHHHHHHHHhc---CCCCeEEEEccccccc
Q psy17126 53 NEVCEVGPGPGSITRSILNR--R-PARLVLIEKDPRFTPCLDMLAQA---SPCPVHFHLGDVMSFT 112 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La~~--~-~~~V~avEid~~m~~~l~~~~~~---~~~~v~vi~~D~~~~~ 112 (240)
.+|+=||+|+=-+|..+... + ...|+++|+|+..++.+++.... ...+++++.+|+....
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~ 187 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT 187 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc
Confidence 49999999999998665542 2 35799999999999999887652 3478999999998754
No 271
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.37 E-value=0.48 Score=45.42 Aligned_cols=91 Identities=11% Similarity=0.048 Sum_probs=60.5
Q ss_pred CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchh---hhcccc-cC
Q psy17126 52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSE---DRRRDW-SE 127 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~---~~~~~~-~~ 127 (240)
.-+++|+=||.|.++..+-..+...|.++|+|+...+..+.|... .+...++.+|+.+++....... ...... ..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~-~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~ 166 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC-DPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQH 166 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC-CCccceeccChhhCccccccccchhhhhhhhhcc
Confidence 458999999999999999877655789999999998887765421 1345667889988865421100 000000 00
Q ss_pred CCCceEEEecCC---CCCC
Q psy17126 128 GLPGIRIIGNLP---FNVS 143 (240)
Q Consensus 128 ~~~~~~VvsNlP---Y~Is 143 (240)
....|++++.+| |++.
T Consensus 167 ~p~~DvL~gGpPCQ~FS~A 185 (467)
T PRK10458 167 IPDHDVLLAGFPCQPFSLA 185 (467)
T ss_pred CCCCCEEEEcCCCCccchh
Confidence 124689999998 6654
No 272
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=92.99 E-value=0.057 Score=40.29 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=16.7
Q ss_pred EEECCchhHHHHHHHhhC--C--CeEEEEeCCcc---hHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 56 CEVGPGPGSITRSILNRR--P--ARLVLIEKDPR---FTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 56 LEIG~GtG~lt~~La~~~--~--~~V~avEid~~---m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
||||+..|.-|..+++.. . .++++||..+. .-+.+++ .....+++++++|..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~ 61 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDF 61 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHH
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHH
Confidence 699999999998888742 1 37999999994 3333332 22346899999999764
No 273
>KOG4589|consensus
Probab=92.95 E-value=0.14 Score=43.29 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=53.5
Q ss_pred CCCCCEEEEECCchhHHHHHHHhhC-C-CeEEEEeCCcchHHHHHHHHhcCCCCeEEEEc-cccccccc-ccchhhhccc
Q psy17126 49 TITGNEVCEVGPGPGSITRSILNRR-P-ARLVLIEKDPRFTPCLDMLAQASPCPVHFHLG-DVMSFTMQ-NMFSEDRRRD 124 (240)
Q Consensus 49 ~~~~~~VLEIG~GtG~lt~~La~~~-~-~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~-D~~~~~~~-~~~~~~~~~~ 124 (240)
+.++++|||+||-+|+.+....++. + +.|.|||+-.-.- ...++++++ |+.+.... .++...
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----------~~Ga~~i~~~dvtdp~~~~ki~e~l---- 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----------PEGATIIQGNDVTDPETYRKIFEAL---- 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----------CCCcccccccccCCHHHHHHHHHhC----
Confidence 3589999999999999999888874 2 7899999864221 244667777 66654321 222210
Q ss_pred ccCCCCceEEEecCCCCCCH
Q psy17126 125 WSEGLPGIRIIGNLPFNVST 144 (240)
Q Consensus 125 ~~~~~~~~~VvsNlPY~Iss 144 (240)
.+-+.|+|+|.+-.|-|.
T Consensus 133 --p~r~VdvVlSDMapnaTG 150 (232)
T KOG4589|consen 133 --PNRPVDVVLSDMAPNATG 150 (232)
T ss_pred --CCCcccEEEeccCCCCcC
Confidence 113578999988666554
No 274
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.91 E-value=0.45 Score=35.78 Aligned_cols=47 Identities=28% Similarity=0.322 Sum_probs=34.1
Q ss_pred CchhHHHHHHHhh---CCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 60 PGPGSITRSILNR---RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 60 ~GtG~lt~~La~~---~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
||.|.++..+++. ....|+.+|.|++.++.+++ ..+.++.||..+.+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~------~~~~~i~gd~~~~~ 53 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE------EGVEVIYGDATDPE 53 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH------TTSEEEES-TTSHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh------cccccccccchhhh
Confidence 5667788777764 22489999999999887764 23789999998754
No 275
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=92.78 E-value=0.25 Score=42.28 Aligned_cols=80 Identities=13% Similarity=0.122 Sum_probs=42.3
Q ss_pred CccccCCHH---HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhh-----CCCeEEEEeCCcchHHHHHHHHhcCCCCe
Q psy17126 30 SQNFLFEPR---LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-----RPARLVLIEKDPRFTPCLDMLAQASPCPV 101 (240)
Q Consensus 30 gQ~fl~d~~---i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~-----~~~~V~avEid~~m~~~l~~~~~~~~~~v 101 (240)
|.-.+..|. ..+.++-.+. .+.|+|+|.=.|.-+...|.. ..++|+|||+|.+.............+++
T Consensus 11 G~pi~q~P~Dm~~~qeli~~~k---Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI 87 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWELK---PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRI 87 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHHH-----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTE
T ss_pred CeehhcCHHHHHHHHHHHHHhC---CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCce
Confidence 443444443 4455555543 479999999887776655542 13799999998766543322111123789
Q ss_pred EEEEccccccc
Q psy17126 102 HFHLGDVMSFT 112 (240)
Q Consensus 102 ~vi~~D~~~~~ 112 (240)
++++||..+.+
T Consensus 88 ~~i~Gds~d~~ 98 (206)
T PF04989_consen 88 TFIQGDSIDPE 98 (206)
T ss_dssp EEEES-SSSTH
T ss_pred EEEECCCCCHH
Confidence 99999987654
No 276
>KOG1227|consensus
Probab=92.63 E-value=0.026 Score=50.76 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=49.6
Q ss_pred CCCEEEEECCchhHHHH-HHHhhCCCeEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccc
Q psy17126 51 TGNEVCEVGPGPGSITR-SILNRRPARLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTM 113 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~-~La~~~~~~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~ 113 (240)
.+..|+|+=+|.|++|. .+...+++.|+|+|.+|..++.++++++... .+..++.||-...-+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~ 259 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP 259 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc
Confidence 35789999999999999 6666677899999999999999998776432 455667777665443
No 277
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.60 E-value=0.11 Score=39.90 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=32.2
Q ss_pred HHHHHHHHcC----CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcc
Q psy17126 39 LTDKIVRNAG----TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPR 85 (240)
Q Consensus 39 i~~~iv~~~~----~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~ 85 (240)
++..++..-. ..+....+|||||.|-|.--|.+.+ -+-.|+|.-.+
T Consensus 42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EG-y~G~GiD~R~R 91 (112)
T PF07757_consen 42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEG-YPGWGIDARRR 91 (112)
T ss_pred HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCC-CCccccccccc
Confidence 5555554422 2244579999999999999888875 57788887543
No 278
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=92.22 E-value=0.24 Score=41.90 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=29.5
Q ss_pred CCCEEEEECCchhH----HHHHHHhh---CC---CeEEEEeCCcchHHHHHH
Q psy17126 51 TGNEVCEVGPGPGS----ITRSILNR---RP---ARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 51 ~~~~VLEIG~GtG~----lt~~La~~---~~---~~V~avEid~~m~~~l~~ 92 (240)
..-+|+..||+||- +++.+.+. .. .+|+|.|+|+.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 45789999999995 44444441 11 489999999999999986
No 279
>KOG1709|consensus
Probab=92.17 E-value=0.63 Score=40.33 Aligned_cols=72 Identities=19% Similarity=0.191 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
+....++.+. .+|.+||+||-|-|.....+.++.+.+-+-||..++.+..++...-....||.++.|-+++.
T Consensus 90 iMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDv 161 (271)
T KOG1709|consen 90 IMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDV 161 (271)
T ss_pred HHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhh
Confidence 4444444444 67899999999999999999887666777799999999998874322237899999988775
No 280
>KOG1122|consensus
Probab=92.12 E-value=0.44 Score=44.84 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=56.9
Q ss_pred HcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc
Q psy17126 46 NAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT 112 (240)
Q Consensus 46 ~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~ 112 (240)
.+.+++|.+|||.++-+|.=|..+|... .+.|+|.|.+..-+..++.++.+.+ .+..+.+.|..+++
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~ 305 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP 305 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc
Confidence 4567899999999999999998888742 4789999999999999999888776 77888889988654
No 281
>KOG2198|consensus
Probab=91.85 E-value=0.52 Score=43.62 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=65.5
Q ss_pred HcCCCCCCEEEEECCchhHHHHHHHhhCC-----CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEcccccccccccchh
Q psy17126 46 NAGTITGNEVCEVGPGPGSITRSILNRRP-----ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFTMQNMFSE 119 (240)
Q Consensus 46 ~~~~~~~~~VLEIG~GtG~lt~~La~~~~-----~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~~~~~~~~ 119 (240)
.++++++++|||.++-+|.=|..|++... +.|+|-|.|..=+..+..-....+ .++.+.+.|+..++-..+
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~--- 226 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYL--- 226 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccccc---
Confidence 35678999999999999999999988642 289999999887777766444433 678888888776542110
Q ss_pred hhccccc--CCCCceEEEecCCCCCC
Q psy17126 120 DRRRDWS--EGLPGIRIIGNLPFNVS 143 (240)
Q Consensus 120 ~~~~~~~--~~~~~~~VvsNlPY~Is 143 (240)
..|. ....||+|....|=.-.
T Consensus 227 ---~~~~~~~~~~fDrVLvDVPCS~D 249 (375)
T KOG2198|consen 227 ---KDGNDKEQLKFDRVLVDVPCSGD 249 (375)
T ss_pred ---ccCchhhhhhcceeEEecccCCC
Confidence 0222 22468999999885443
No 282
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=91.67 E-value=0.2 Score=47.97 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=26.6
Q ss_pred HHHHHHHHcCC----CCCCEEEEECCchhHHHHHHHhhC
Q psy17126 39 LTDKIVRNAGT----ITGNEVCEVGPGPGSITRSILNRR 73 (240)
Q Consensus 39 i~~~iv~~~~~----~~~~~VLEIG~GtG~lt~~La~~~ 73 (240)
.++.|.+.++. ..-.++||||||+|+++..|++++
T Consensus 101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~ 139 (506)
T PF03141_consen 101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN 139 (506)
T ss_pred HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC
Confidence 45666666654 223678999999999999999884
No 283
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=91.60 E-value=0.49 Score=42.05 Aligned_cols=41 Identities=10% Similarity=0.087 Sum_probs=32.5
Q ss_pred CCEEEEECCchh----HHHHHHHhhC------CCeEEEEeCCcchHHHHHH
Q psy17126 52 GNEVCEVGPGPG----SITRSILNRR------PARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 52 ~~~VLEIG~GtG----~lt~~La~~~------~~~V~avEid~~m~~~l~~ 92 (240)
.-+|+.+||+|| ++++.|.+.. ..+|+|.|+|...++.|+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 578999999999 4555555543 2589999999999999875
No 284
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.57 E-value=0.63 Score=43.44 Aligned_cols=50 Identities=12% Similarity=0.184 Sum_probs=38.5
Q ss_pred HHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh
Q psy17126 45 RNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ 95 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~ 95 (240)
+.+.+.++++||-|.+|-...-..|+. .+++|+|||++|.....++-+.+
T Consensus 29 ~aL~i~~~d~vl~ItSaG~N~L~yL~~-~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAGCNALDYLLA-GPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHhCCCCCCeEEEEccCCchHHHHHhc-CCceEEEEeCCHHHHHHHHHHHH
Confidence 446888999999998886666555555 47999999999998877665443
No 285
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.53 E-value=2.1 Score=39.31 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=39.8
Q ss_pred HHcCCCCCCEEEEECCc-hhHHHHHHHhhCCCeEEEEeCCcchHHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGPG-PGSITRSILNRRPARLVLIEKDPRFTPCLDML 93 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~G-tG~lt~~La~~~~~~V~avEid~~m~~~l~~~ 93 (240)
+..+.++|++|+=+|+| .|.++..+++....+|+|++.+++-.+.+++.
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL 209 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh
Confidence 34567889998888776 67888899985448999999999998888764
No 286
>PTZ00357 methyltransferase; Provisional
Probab=90.52 E-value=0.69 Score=46.33 Aligned_cols=84 Identities=15% Similarity=0.079 Sum_probs=52.2
Q ss_pred CEEEEECCchhHHHHHHHhhC-----CCeEEEEeCCcchHHHHHHH---HhcC-------CCCeEEEEcccccccccccc
Q psy17126 53 NEVCEVGPGPGSITRSILNRR-----PARLVLIEKDPRFTPCLDML---AQAS-------PCPVHFHLGDVMSFTMQNMF 117 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La~~~-----~~~V~avEid~~m~~~l~~~---~~~~-------~~~v~vi~~D~~~~~~~~~~ 117 (240)
..|+=+|+|-|-|....++.. ..+|+|||.++..+.....+ ...+ +++|++|.+|+..+..+...
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 358999999999986665532 25899999997644333222 1223 34599999999998643210
Q ss_pred hhh-hcccccCCCCceEEEecCC
Q psy17126 118 SED-RRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 118 ~~~-~~~~~~~~~~~~~VvsNlP 139 (240)
... .+..| ++.|+|||-|=
T Consensus 782 ~s~~~P~~~---gKaDIVVSELL 801 (1072)
T PTZ00357 782 GSLTLPADF---GLCDLIVSELL 801 (1072)
T ss_pred ccccccccc---cccceehHhhh
Confidence 000 00111 35789998663
No 287
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=90.49 E-value=0.64 Score=41.40 Aligned_cols=39 Identities=15% Similarity=-0.019 Sum_probs=34.3
Q ss_pred CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHH
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL 90 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l 90 (240)
...+||=.|||.|.|+-.++.++ ..|.|.|.|--|+-..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G-~~~~gnE~S~~Mll~s 94 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG-YAVQGNEFSYFMLLAS 94 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc-ceEEEEEchHHHHHHH
Confidence 45789999999999999999995 6999999999986443
No 288
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=89.68 E-value=0.66 Score=41.23 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=37.4
Q ss_pred CEEEEECCchhH--HHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc
Q psy17126 53 NEVCEVGPGPGS--ITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT 112 (240)
Q Consensus 53 ~~VLEIG~GtG~--lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~ 112 (240)
...||||||.-+ -+-.+++.. .++|+-||.||-.+.+++..+.... +...++++|+.+.+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~ 134 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPE 134 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHH
Confidence 679999999653 244555432 3799999999999999998775432 23899999998743
No 289
>KOG2920|consensus
Probab=88.80 E-value=0.3 Score=43.62 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=37.9
Q ss_pred HHHHHHHHc--C-CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHH
Q psy17126 39 LTDKIVRNA--G-TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTP 88 (240)
Q Consensus 39 i~~~iv~~~--~-~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~ 88 (240)
++..+.+.+ . ...+++|||+|||+|.....+...+...+...|.+...++
T Consensus 101 l~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 101 LLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred HHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 445555443 2 2468999999999999999888876578999999877763
No 290
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=88.65 E-value=0.23 Score=37.68 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=12.2
Q ss_pred CceEEEecCCCCCCH
Q psy17126 130 PGIRIIGNLPFNVST 144 (240)
Q Consensus 130 ~~~~VvsNlPY~Iss 144 (240)
+||+|||||||.-..
T Consensus 2 kFD~VIGNPPY~~~~ 16 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIK 16 (106)
T ss_pred CcCEEEECCCChhhc
Confidence 479999999996544
No 291
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=88.59 E-value=0.29 Score=45.70 Aligned_cols=89 Identities=11% Similarity=0.110 Sum_probs=50.2
Q ss_pred HHHHHhCchhhhccCccccCCHHHHHHHH---HH----cCC---C-CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCc
Q psy17126 16 DIIKLYKLRALKQLSQNFLFEPRLTDKIV---RN----AGT---I-TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP 84 (240)
Q Consensus 16 ~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv---~~----~~~---~-~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~ 84 (240)
+.+.+.|-....+|-+|=..++.++..+. +. +.. . ..-+|+|+|||+|..|..+....
T Consensus 17 ~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~i----------- 85 (386)
T PLN02668 17 KLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVI----------- 85 (386)
T ss_pred cccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHH-----------
Confidence 34555555566666666444444433332 11 111 1 24689999999999998877652
Q ss_pred chHHHHHHHHhc---CCCCeEEEEcccccccccccc
Q psy17126 85 RFTPCLDMLAQA---SPCPVHFHLGDVMSFTMQNMF 117 (240)
Q Consensus 85 ~m~~~l~~~~~~---~~~~v~vi~~D~~~~~~~~~~ 117 (240)
++..+++... ..+.++++..|...-||..+|
T Consensus 86 --I~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF 119 (386)
T PLN02668 86 --VKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLF 119 (386)
T ss_pred --HHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHH
Confidence 2222222211 124588888888776666554
No 292
>KOG3178|consensus
Probab=88.16 E-value=0.74 Score=42.26 Aligned_cols=56 Identities=21% Similarity=0.244 Sum_probs=45.1
Q ss_pred CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
-...+|+|.|.|.++..++... .+|-+++.|...+-.++.... +.|+.+-||..+-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~ 233 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQD 233 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc---CCcceeccccccc
Confidence 4789999999999999999965 589999999888776665442 3388888888764
No 293
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.93 E-value=1.1 Score=35.40 Aligned_cols=52 Identities=27% Similarity=0.225 Sum_probs=31.4
Q ss_pred EECCchh--HHHHHHHh--hC-CCeEEEEeCCcchHHHHHHH--HhcC--CCCeEEEEccc
Q psy17126 57 EVGPGPG--SITRSILN--RR-PARLVLIEKDPRFTPCLDML--AQAS--PCPVHFHLGDV 108 (240)
Q Consensus 57 EIG~GtG--~lt~~La~--~~-~~~V~avEid~~m~~~l~~~--~~~~--~~~v~vi~~D~ 108 (240)
|||++.| ..+..++. .. ..+|+++|.++..++.++.+ ..-. ...++++...+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 66665542 22 37899999999999999887 3322 13366665544
No 294
>KOG2360|consensus
Probab=87.84 E-value=0.84 Score=42.53 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=55.6
Q ss_pred HHHHcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc
Q psy17126 43 IVRNAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT 112 (240)
Q Consensus 43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~ 112 (240)
.+..+...+|.+|+|+.|-+|.=|..++... -++++|+|.|++-.+.+++.....+ ..+..+.+|++.+.
T Consensus 205 pA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~ 277 (413)
T KOG2360|consen 205 PAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTA 277 (413)
T ss_pred hhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCC
Confidence 3344566788999999999999999988742 3799999999998888877554434 66788899999863
No 295
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=87.66 E-value=1.3 Score=35.61 Aligned_cols=54 Identities=13% Similarity=0.042 Sum_probs=38.7
Q ss_pred eEEEEeCCcchHHHHHHHHhcCC--CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCC
Q psy17126 76 RLVLIEKDPRFTPCLDMLAQASP--CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 76 ~V~avEid~~m~~~l~~~~~~~~--~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY 140 (240)
+|+|+||.++.++..+++++..+ .++++++.+-.+++ +..+. ++.+.++-||=|
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~--~~i~~---------~~v~~~iFNLGY 56 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLD--EYIPE---------GPVDAAIFNLGY 56 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGG--GT--S-----------EEEEEEEESB
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHH--hhCcc---------CCcCEEEEECCc
Confidence 69999999999999999876653 67999999888754 22211 357899999876
No 296
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.36 E-value=1.7 Score=42.79 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=36.0
Q ss_pred CEEEEECCchhHHHHHHHh---hCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 53 NEVCEVGPGPGSITRSILN---RRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La~---~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
++|+=+|+| .++..+++ .....++++|.|++.++.+++ ....++.||+.+.+
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~------~g~~v~~GDat~~~ 455 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK------YGYKVYYGDATQLE 455 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh------CCCeEEEeeCCCHH
Confidence 456666655 44444443 223689999999999888764 24679999998755
No 297
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.69 E-value=1.9 Score=41.89 Aligned_cols=115 Identities=13% Similarity=0.022 Sum_probs=62.9
Q ss_pred CEEEEECCchhHHHHHHHhh---CCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126 53 NEVCEVGPGPGSITRSILNR---RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La~~---~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~ 129 (240)
++|+=+|||. ++..+++. ....|+.+|.|++.++.+++ ..+.+++||+.+.+.-+... -.
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~------~g~~~i~GD~~~~~~L~~a~---------i~ 480 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRE------RGIRAVLGNAANEEIMQLAH---------LD 480 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------CCCeEEEcCCCCHHHHHhcC---------cc
Confidence 5666666664 44444432 13689999999998887763 24789999998743211000 02
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhccccccccchh-h---hhHHHHHHHcCCCCCCCCCCCC
Q psy17126 130 PGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHK-R---QLVVSLLERACVKPILRPYQLS 187 (240)
Q Consensus 130 ~~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~~-~---~~~~~~l~~~gi~~~~R~e~ls 187 (240)
..+.++...+-.-..-.+...+... ..++..+ | ....+.++++|+|--.-||...
T Consensus 481 ~a~~viv~~~~~~~~~~iv~~~~~~---~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~~ 539 (558)
T PRK10669 481 CARWLLLTIPNGYEAGEIVASAREK---RPDIEIIARAHYDDEVAYITERGANQVVMGEREI 539 (558)
T ss_pred ccCEEEEEcCChHHHHHHHHHHHHH---CCCCeEEEEECCHHHHHHHHHcCCCEEEChHHHH
Confidence 4566666555332222222222221 1222222 2 3344557889988776665433
No 298
>KOG2352|consensus
Probab=86.69 E-value=1.7 Score=41.57 Aligned_cols=65 Identities=6% Similarity=0.174 Sum_probs=52.8
Q ss_pred CCC-EEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126 51 TGN-EVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN 115 (240)
Q Consensus 51 ~~~-~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~ 115 (240)
+.+ +++.+|||.=.++..+-+.+-..|+.+|+|+-.++...........-.++...|+..+.+++
T Consensus 47 p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fed 112 (482)
T KOG2352|consen 47 PSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFED 112 (482)
T ss_pred hhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCC
Confidence 445 99999999999999998877679999999999988776533233366889999999888765
No 299
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=86.38 E-value=3.1 Score=32.84 Aligned_cols=87 Identities=18% Similarity=0.312 Sum_probs=44.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCchhHH-HHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccch
Q psy17126 40 TDKIVRNAGTITGNEVCEVGPGPGSI-TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFS 118 (240)
Q Consensus 40 ~~~iv~~~~~~~~~~VLEIG~GtG~l-t~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~ 118 (240)
++.|++.. +..+|+|||-|.=.- +..|.+++ ..|+++|+.+. .+ ...+.++.-|+.+-+++- .
T Consensus 5 a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G-~dV~~tDi~~~---~a-------~~g~~~v~DDif~P~l~i-Y- 68 (127)
T PF03686_consen 5 AEYIARLN---NYGKIVEVGIGFNPEVAKKLKERG-FDVIATDINPR---KA-------PEGVNFVVDDIFNPNLEI-Y- 68 (127)
T ss_dssp HHHHHHHS----SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S--------------STTEE---SSS--HHH-H-
T ss_pred HHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcC-CcEEEEECccc---cc-------ccCcceeeecccCCCHHH-h-
Confidence 44455443 345999999997554 45555565 79999999988 11 134778899998865432 2
Q ss_pred hhhcccccCCCCceEEEe-cCCCCCCHHHHHHHHHh
Q psy17126 119 EDRRRDWSEGLPGIRIIG-NLPFNVSTPLIIKWIQA 153 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~Vvs-NlPY~Iss~il~~ll~~ 153 (240)
...++|-| +||--+-.+++ ++...
T Consensus 69 ----------~~a~lIYSiRPP~El~~~il-~lA~~ 93 (127)
T PF03686_consen 69 ----------EGADLIYSIRPPPELQPPIL-ELAKK 93 (127)
T ss_dssp ----------TTEEEEEEES--TTSHHHHH-HHHHH
T ss_pred ----------cCCcEEEEeCCChHHhHHHH-HHHHH
Confidence 13467776 77777766654 44443
No 300
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=85.66 E-value=6.5 Score=34.62 Aligned_cols=99 Identities=11% Similarity=0.069 Sum_probs=62.9
Q ss_pred CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCc-chHHHHHHHHhc----CCCCeEEEEcccccccccccchhhhccccc
Q psy17126 52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDP-RFTPCLDMLAQA----SPCPVHFHLGDVMSFTMQNMFSEDRRRDWS 126 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~-~m~~~l~~~~~~----~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~ 126 (240)
...|+.+|||.=+....+... ..+.-+|+|. ++++.=++.+.. ...+.+++..|+. -++.+.+ ...+|.
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~--~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L---~~~gfd 155 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWP--DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAAL---AAAGFD 155 (260)
T ss_pred CcEEEEeCCccccHHHhcCCC--CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHH---HhCCCC
Confidence 457999999998888777432 3577788884 444443334443 1367899999987 4443222 122343
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126 127 EGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156 (240)
Q Consensus 127 ~~~~~~~VvsNlPY~Iss~il~~ll~~~~~ 156 (240)
...+...|.-.+-+|++...+.+++.....
T Consensus 156 ~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~ 185 (260)
T TIGR00027 156 PTAPTAWLWEGLLMYLTEEAVDALLAFIAE 185 (260)
T ss_pred CCCCeeeeecchhhcCCHHHHHHHHHHHHH
Confidence 333445566677778999888888776643
No 301
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=85.17 E-value=1.1 Score=37.14 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=55.1
Q ss_pred CEEEEECCchhHHHHHHHhhCCCeEEEEeCCc-chHHHHHHHHhcCC----CCeEEEEcccccccccccchhhhcccccC
Q psy17126 53 NEVCEVGPGPGSITRSILNRRPARLVLIEKDP-RFTPCLDMLAQASP----CPVHFHLGDVMSFTMQNMFSEDRRRDWSE 127 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La~~~~~~V~avEid~-~m~~~l~~~~~~~~----~~v~vi~~D~~~~~~~~~~~~~~~~~~~~ 127 (240)
..|+.+|||.=+....+.... ..+.-+|+|. ++++.=++.+.... .+.+++.+|+.+.++.+... ..+|..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~-~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~---~~g~~~ 155 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPA-GGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALP---KAGFDP 155 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTT-TTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHH---HCTT-T
T ss_pred cEEEEcCCCCCchHHHhhccc-cceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHH---HhCCCC
Confidence 489999999999999998753 3677777774 44444333333321 34667999999855433222 234543
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHh
Q psy17126 128 GLPGIRIIGNLPFNVSTPLIIKWIQA 153 (240)
Q Consensus 128 ~~~~~~VvsNlPY~Iss~il~~ll~~ 153 (240)
..+...|.-.+-+|++..-+..++..
T Consensus 156 ~~ptl~i~Egvl~Yl~~~~~~~ll~~ 181 (183)
T PF04072_consen 156 DRPTLFIAEGVLMYLSPEQVDALLRA 181 (183)
T ss_dssp TSEEEEEEESSGGGS-HHHHHHHHHH
T ss_pred CCCeEEEEcchhhcCCHHHHHHHHHH
Confidence 33444455555566888777777764
No 302
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=84.94 E-value=3.5 Score=37.88 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=39.5
Q ss_pred HHcCCCCCCEEEEECCch-hHHHHHHHhhCC-CeEEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGPGP-GSITRSILNRRP-ARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~-~~V~avEid~~m~~~l~~ 92 (240)
....+.++.+||.+|||+ |.++..+++... .+|++++.++...+.+++
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 344567889999999998 999999998754 369999999998888775
No 303
>KOG2793|consensus
Probab=84.91 E-value=3.2 Score=36.53 Aligned_cols=81 Identities=15% Similarity=-0.043 Sum_probs=44.3
Q ss_pred CCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHh-------cCCCCeEEEEcccccccccccchhhhcc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-------ASPCPVHFHLGDVMSFTMQNMFSEDRRR 123 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~-------~~~~~v~vi~~D~~~~~~~~~~~~~~~~ 123 (240)
...+|||+|+|+|--+...+......|+.-|+- ..+..++.+.. ..+..+.+..-++......+...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~----- 159 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL----- 159 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc-----
Confidence 356799999999976666666544566666654 33444443321 11234555544554432222111
Q ss_pred cccCCCCceEEEecCCCC
Q psy17126 124 DWSEGLPGIRIIGNLPFN 141 (240)
Q Consensus 124 ~~~~~~~~~~VvsNlPY~ 141 (240)
+| ++|+|++.-++|
T Consensus 160 ~~----~~DlilasDvvy 173 (248)
T KOG2793|consen 160 PN----PFDLILASDVVY 173 (248)
T ss_pred CC----cccEEEEeeeee
Confidence 11 168888887744
No 304
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=84.85 E-value=1.5 Score=37.74 Aligned_cols=101 Identities=13% Similarity=-0.076 Sum_probs=59.7
Q ss_pred cCccccC----CHHHHHHHHHHcCCCC----CCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCC
Q psy17126 29 LSQNFLF----EPRLTDKIVRNAGTIT----GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP 100 (240)
Q Consensus 29 ~gQ~fl~----d~~i~~~iv~~~~~~~----~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~ 100 (240)
.||..-- ...+++++.+...... .-++|||||=+......-.. .-.|++||+.+.-
T Consensus 21 ~Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~--~fdvt~IDLns~~-------------- 84 (219)
T PF11968_consen 21 QGQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG--WFDVTRIDLNSQH-------------- 84 (219)
T ss_pred hcCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCcccccC--ceeeEEeecCCCC--------------
Confidence 4776543 2344555544432222 25899999986554333222 2469999998621
Q ss_pred eEEEEcccccccccccchhhhcccccCCCCceEEEecCCC-CCCHHH-HHHHHHhcc
Q psy17126 101 VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPF-NVSTPL-IIKWIQAIS 155 (240)
Q Consensus 101 v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY-~Iss~i-l~~ll~~~~ 155 (240)
-.|.+.|+++.+++..- .+.||+|+..|=- ++.+|. --.++....
T Consensus 85 ~~I~qqDFm~rplp~~~----------~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~ 131 (219)
T PF11968_consen 85 PGILQQDFMERPLPKNE----------SEKFDVISLSLVLNFVPDPKQRGEMLRRAH 131 (219)
T ss_pred CCceeeccccCCCCCCc----------ccceeEEEEEEEEeeCCCHHHHHHHHHHHH
Confidence 23779999999886531 1468888877652 245444 444555443
No 305
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.60 E-value=3.5 Score=36.88 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=71.5
Q ss_pred CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~ 129 (240)
.++...+|+|+-+|.-|-.|.+++ -.|++||--+ |.+.+- . .+.++-...|-.++.... .
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~-m~V~aVDng~-ma~sL~---d--tg~v~h~r~DGfk~~P~r-------------~ 269 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRN-MRVYAVDNGP-MAQSLM---D--TGQVTHLREDGFKFRPTR-------------S 269 (358)
T ss_pred cCCceeeecccCCCccchhhhhcc-eEEEEeccch-hhhhhh---c--ccceeeeeccCcccccCC-------------C
Confidence 588999999999999999999985 7999999654 333222 1 256777777777654311 2
Q ss_pred CceEEEecCCC--CCCHHHHHHHHHhccccccccchh-------h--------hhHHHHHHHcCCCCCCCCCCC
Q psy17126 130 PGIRIIGNLPF--NVSTPLIIKWIQAISENLLFPKHK-------R--------QLVVSLLERACVKPILRPYQL 186 (240)
Q Consensus 130 ~~~~VvsNlPY--~Iss~il~~ll~~~~~~~~~~~~~-------~--------~~~~~~l~~~gi~~~~R~e~l 186 (240)
+.|..|+.+-- .-.+.++.+||... |+-+..+- | +-.++.+.+-|+..+.++.+|
T Consensus 270 ~idWmVCDmVEkP~rv~~li~~Wl~nG--wCre~IfNLKLPMKkRy~Ev~~~L~~~~~~l~~~g~~~~i~aKqL 341 (358)
T COG2933 270 NIDWMVCDMVEKPARVAALIAKWLVNG--WCRETIFNLKLPMKKRYEEVRLCLARLEEQLDEHGINAQIQAKQL 341 (358)
T ss_pred CCceEEeehhcCcHHHHHHHHHHHHcc--hHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhcCCceeechhhh
Confidence 35666666532 12345677777642 22221110 1 234455667788888877543
No 306
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=84.57 E-value=4.5 Score=38.24 Aligned_cols=63 Identities=25% Similarity=0.296 Sum_probs=43.8
Q ss_pred CccccCCHHHHHHHHHHcCC-CCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 30 SQNFLFEPRLTDKIVRNAGT-ITGNEVCEVGPGP-GSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 30 gQ~fl~d~~i~~~iv~~~~~-~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
...|-+-..+.+.|++..++ .+|++|+=+|+|+ |..+..+++..+.+|+++|.++.-...++.
T Consensus 179 dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 179 DNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred cccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 33344556677888887765 4799999999998 444444555434699999999876655543
No 307
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.91 E-value=3.6 Score=37.61 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=44.9
Q ss_pred ccCccccCCHHHHH--HHHHHcCCCCCCEEEEECCch-hHHHHHHHhh-CCCeEEEEeCCcchHHHHHH
Q psy17126 28 QLSQNFLFEPRLTD--KIVRNAGTITGNEVCEVGPGP-GSITRSILNR-RPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 28 ~~gQ~fl~d~~i~~--~iv~~~~~~~~~~VLEIG~Gt-G~lt~~La~~-~~~~V~avEid~~m~~~l~~ 92 (240)
.+..-+++++.-+. ..+......++.+|+=+|||+ |-++..+++. ++.+|+++|.++.-++.+++
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 34444556665444 333444445556999999998 5556666665 35899999999999998886
No 308
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.73 E-value=3.4 Score=38.64 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCC--CCCCEEEEECCchhHHHHHHHhh---CCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 37 PRLTDKIVRNAGT--ITGNEVCEVGPGPGSITRSILNR---RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 37 ~~i~~~iv~~~~~--~~~~~VLEIG~GtG~lt~~La~~---~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
+.-+..+.+.+.. ....+|+=+|+| .++..+++. ....|+.+|.|++.++.+++. ..++.++.||+.+.
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~----~~~~~~i~gd~~~~ 287 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEE----LPNTLVLHGDGTDQ 287 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH----CCCCeEEECCCCCH
Confidence 3344555444332 234678888875 555444442 136899999999988777652 13578899999764
Q ss_pred cccccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHH-HhccccccccchhhhhHHHHHHHcCCCCCCCCCCCC
Q psy17126 112 TMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWI-QAISENLLFPKHKRQLVVSLLERACVKPILRPYQLS 187 (240)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll-~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~R~e~ls 187 (240)
.. +... +-...+.||+-.+-. ..-++..++ .....-.+-+........+.+..+|++--..|+.+.
T Consensus 288 ~~--L~~~-------~~~~a~~vi~~~~~~-~~n~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~ 354 (453)
T PRK09496 288 EL--LEEE-------GIDEADAFIALTNDD-EANILSSLLAKRLGAKKVIALVNRPAYVDLVEGLGIDIAISPRQAT 354 (453)
T ss_pred HH--HHhc-------CCccCCEEEECCCCc-HHHHHHHHHHHHhCCCeEEEEECCcchHHHHHhcCCCEEECHHHHH
Confidence 31 1100 012456677655532 233332222 222111111111113344567888877655555443
No 309
>KOG1269|consensus
Probab=82.42 E-value=1.1 Score=41.55 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=51.8
Q ss_pred CCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEccccccccccc
Q psy17126 48 GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFTMQNM 116 (240)
Q Consensus 48 ~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~~~~~ 116 (240)
...++..++|+|||.|..+..++......+++++.++-.+.......... ..+-.++.+|+.+.++++.
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn 177 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDN 177 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCcc
Confidence 34677899999999999999999875579999999988776665533221 2344458889998887653
No 310
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.27 E-value=6.6 Score=36.84 Aligned_cols=139 Identities=9% Similarity=0.023 Sum_probs=84.3
Q ss_pred CEEEEECCchhHHHHHH----HhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccC
Q psy17126 53 NEVCEVGPGPGSITRSI----LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSE 127 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~L----a~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~ 127 (240)
.+||=|||| ..+... ++++..+|+..|.+.+-+..+.... ..+++.++-|+.+.+ +.++.
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~---~~~v~~~~vD~~d~~al~~li---------- 66 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI---GGKVEALQVDAADVDALVALI---------- 66 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc---cccceeEEecccChHHHHHHH----------
Confidence 468899995 444433 3343369999999988877765432 357999999998863 22333
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhccccccccch-----hh--hhHHH----HHHHcCCCCCCCCCCCCHHHHHHHHH
Q psy17126 128 GLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKH-----KR--QLVVS----LLERACVKPILRPYQLSVQEFGQICL 196 (240)
Q Consensus 128 ~~~~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~-----~~--~~~~~----~l~~~gi~~~~R~e~ls~~~f~~L~~ 196 (240)
..+|+||+-+||+....++...++..-. +++... ++ +.+.+ .+-.+|++|..-- .++.
T Consensus 67 -~~~d~VIn~~p~~~~~~i~ka~i~~gv~-yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~n---------v~a~ 135 (389)
T COG1748 67 -KDFDLVINAAPPFVDLTILKACIKTGVD-YVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITN---------VLAA 135 (389)
T ss_pred -hcCCEEEEeCCchhhHHHHHHHHHhCCC-EEEcccCCchhhhhhHHHHHcCeEEEcccCcCcchHH---------HHHH
Confidence 2459999999999998777666665433 222111 11 11111 2446788887763 2333
Q ss_pred HHHHHHh-hCCCeeeEeccCCC
Q psy17126 197 AYRDMCE-EMPGLYEYTLEDTP 217 (240)
Q Consensus 197 ~l~~~~~-~~p~~~~~~~~~~~ 217 (240)
...++.. +.-.+.+|+=-.+.
T Consensus 136 ~a~~~~~~~i~si~iy~g~~g~ 157 (389)
T COG1748 136 YAAKELFDEIESIDIYVGGLGE 157 (389)
T ss_pred HHHHHhhccccEEEEEEecCCC
Confidence 2223333 66677787744443
No 311
>KOG1596|consensus
Probab=81.26 E-value=4 Score=36.05 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=59.6
Q ss_pred HHHHHHH---HcCCCCCCEEEEECCchhHHHHHHHhhC--CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-
Q psy17126 39 LTDKIVR---NAGTITGNEVCEVGPGPGSITRSILNRR--PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT- 112 (240)
Q Consensus 39 i~~~iv~---~~~~~~~~~VLEIG~GtG~lt~~La~~~--~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~- 112 (240)
+++.|+- .+-++++.+||=+|+++|.-...++... ..-|+|||.++..=..+-..+ ....|+--|..|+....
T Consensus 141 LAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmA-kkRtNiiPIiEDArhP~K 219 (317)
T KOG1596|consen 141 LAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMA-KKRTNIIPIIEDARHPAK 219 (317)
T ss_pred HHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHh-hccCCceeeeccCCCchh
Confidence 4455542 3346899999999999999988887753 268999999987544433222 22367878888887531
Q ss_pred ccccchhhhcccccCCCCceEEEecCCC
Q psy17126 113 MQNMFSEDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~VvsNlPY 140 (240)
+.-+. +-.|.|++.+|-
T Consensus 220 YRmlV-----------gmVDvIFaDvaq 236 (317)
T KOG1596|consen 220 YRMLV-----------GMVDVIFADVAQ 236 (317)
T ss_pred eeeee-----------eeEEEEeccCCC
Confidence 11222 235888988654
No 312
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=80.99 E-value=1.2 Score=32.20 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=42.1
Q ss_pred CCccHHHHHHHhCchhhhccCccccCCHHHHHHHHHHcCCC-CCCEEEEE--CCchhH
Q psy17126 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTI-TGNEVCEV--GPGPGS 64 (240)
Q Consensus 10 ~~~~~~~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~-~~~~VLEI--G~GtG~ 64 (240)
++..+|++++.+|....+.+.++|-+++..++.|++..... .-.+|.+- ||++|.
T Consensus 3 ~L~qlRd~l~~~gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGkverv~~~~~gC~sGs 60 (78)
T PRK15431 3 SLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCLSGS 60 (78)
T ss_pred cHHHHHHHHHHcCcccHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccCCCCCCCCC
Confidence 45678999999999999999999999999999999876432 22344323 787773
No 313
>PRK07454 short chain dehydrogenase; Provisional
Probab=80.90 E-value=11 Score=31.56 Aligned_cols=84 Identities=11% Similarity=0.004 Sum_probs=48.6
Q ss_pred CCCEEEEECCchhHHHHHHH----hhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126 51 TGNEVCEVGPGPGSITRSIL----NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW 125 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La----~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~ 125 (240)
...++|=.|+ +|.++..++ +++ .+|++++.++.-.+.+.+.....+.++.++.+|+.+.+ +...+... ...+
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAG-WDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAEL-LEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHH-HHHc
Confidence 3467888885 555554444 444 59999999876555444433333457889999998753 11111110 0111
Q ss_pred cCCCCceEEEecCCC
Q psy17126 126 SEGLPGIRIIGNLPF 140 (240)
Q Consensus 126 ~~~~~~~~VvsNlPY 140 (240)
++.|.||.|.-+
T Consensus 82 ---~~id~lv~~ag~ 93 (241)
T PRK07454 82 ---GCPDVLINNAGM 93 (241)
T ss_pred ---CCCCEEEECCCc
Confidence 346888877643
No 314
>PRK07904 short chain dehydrogenase; Provisional
Probab=80.77 E-value=11 Score=32.22 Aligned_cols=85 Identities=15% Similarity=0.067 Sum_probs=49.2
Q ss_pred CCCCEEEEECCchhHHHHHHH----hhCCCeEEEEeCCcch-HHHHHHHHhcCC-CCeEEEEccccccc-ccccchhhhc
Q psy17126 50 ITGNEVCEVGPGPGSITRSIL----NRRPARLVLIEKDPRF-TPCLDMLAQASP-CPVHFHLGDVMSFT-MQNMFSEDRR 122 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La----~~~~~~V~avEid~~m-~~~l~~~~~~~~-~~v~vi~~D~~~~~-~~~~~~~~~~ 122 (240)
..+.+||=.|++ |.++..++ ++++.+|++++.++.- ++.+.+.....+ .+++++.+|+.+.+ ..+.+...
T Consensus 6 ~~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~-- 82 (253)
T PRK07904 6 GNPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAA-- 82 (253)
T ss_pred CCCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHH--
Confidence 456789999985 44554444 4433689999888763 444433332222 37899999997643 11122211
Q ss_pred ccccCCCCceEEEecCCC
Q psy17126 123 RDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 123 ~~~~~~~~~~~VvsNlPY 140 (240)
+. .+..|.+|.|...
T Consensus 83 --~~-~g~id~li~~ag~ 97 (253)
T PRK07904 83 --FA-GGDVDVAIVAFGL 97 (253)
T ss_pred --Hh-cCCCCEEEEeeec
Confidence 11 1357888877654
No 315
>KOG1331|consensus
Probab=80.33 E-value=1 Score=40.38 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=46.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccc
Q psy17126 40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQN 115 (240)
Q Consensus 40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~ 115 (240)
+...+.... .+..++|+|||.|-++..= ....+++.|+...++..++. . +...+..+|++++++.+
T Consensus 36 v~qfl~~~~--~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~----~-~~~~~~~ad~l~~p~~~ 101 (293)
T KOG1331|consen 36 VRQFLDSQP--TGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKR----S-GGDNVCRADALKLPFRE 101 (293)
T ss_pred HHHHHhccC--CcceeeecccCCcccCcCC---Ccceeeecchhhhhcccccc----C-CCceeehhhhhcCCCCC
Confidence 444444433 4789999999999875432 23579999999998887763 1 22267889999988765
No 316
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=80.17 E-value=6.8 Score=34.31 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc
Q psy17126 35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA 96 (240)
Q Consensus 35 ~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~ 96 (240)
.+..+..+++.. .-.+++.|||.=+|+|......... ...++++|+++..++.+.++...
T Consensus 207 ~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~-~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 207 KPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNL-GRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred ChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHc-CCceEEEecCHHHHHHHHHHHHh
Confidence 344577777777 4568999999999999988877766 47999999999999999887654
No 317
>PRK05867 short chain dehydrogenase; Provisional
Probab=79.91 E-value=9.7 Score=32.32 Aligned_cols=85 Identities=13% Similarity=0.042 Sum_probs=50.3
Q ss_pred CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+.++|=.|++.| .++..|++.+ .+|+.++.++.-++.+.+.....+.++.++.+|+.+.+ +..++... ...|
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~- 84 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAG-AQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQV-TAEL- 84 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHH-HHHh-
Confidence 4678999997544 2234445554 68999998877665554444333456888899987643 12222110 0112
Q ss_pred CCCCceEEEecCCC
Q psy17126 127 EGLPGIRIIGNLPF 140 (240)
Q Consensus 127 ~~~~~~~VvsNlPY 140 (240)
++.|.+|.|.-.
T Consensus 85 --g~id~lv~~ag~ 96 (253)
T PRK05867 85 --GGIDIAVCNAGI 96 (253)
T ss_pred --CCCCEEEECCCC
Confidence 356888887643
No 318
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=79.39 E-value=15 Score=38.91 Aligned_cols=96 Identities=10% Similarity=-0.035 Sum_probs=62.1
Q ss_pred CCEEEEECCc-hhHHHHHHHhhCC-C-------------eEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc
Q psy17126 52 GNEVCEVGPG-PGSITRSILNRRP-A-------------RLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM 116 (240)
Q Consensus 52 ~~~VLEIG~G-tG~lt~~La~~~~-~-------------~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~ 116 (240)
..+|+=|||| .|......+.+.+ . .|+..|.+..-.+.+.+ .. ++++.+..|+.+. .++
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~---~~-~~~~~v~lDv~D~--e~L 642 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVE---GI-ENAEAVQLDVSDS--ESL 642 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHH---hc-CCCceEEeecCCH--HHH
Confidence 4689999998 3555544443322 2 37778888765544432 22 3566777777653 233
Q ss_pred chhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhcccccccc
Q psy17126 117 FSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFP 161 (240)
Q Consensus 117 ~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~ 161 (240)
... . ...|+||+-+||....++....++....++|..
T Consensus 643 ~~~------v--~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 643 LKY------V--SQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred HHh------h--cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 221 0 137999999999998888888888777777664
No 319
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=78.84 E-value=3 Score=35.82 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHH
Q psy17126 39 LTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLA 94 (240)
Q Consensus 39 i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~ 94 (240)
++..|++.++..+..+++|+=||+|+++..+... +..|+.-|+++..+...+..+
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHHHHH
Confidence 5667777776436789999999999999988765 479999999999887776433
No 320
>KOG0024|consensus
Probab=78.67 E-value=5.9 Score=36.35 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=40.9
Q ss_pred HHHHcCCCCCCEEEEECCch-hHHHHHHHhh-CCCeEEEEeCCcchHHHHHH
Q psy17126 43 IVRNAGTITGNEVCEVGPGP-GSITRSILNR-RPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 43 iv~~~~~~~~~~VLEIG~Gt-G~lt~~La~~-~~~~V~avEid~~m~~~l~~ 92 (240)
-.+..+.+.|.+||=+|+|+ |-+|...|+. ++.+|+.+|+++.-++.+++
T Consensus 161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred hhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 44566788999999999997 5556666664 46899999999999999986
No 321
>KOG2352|consensus
Probab=78.30 E-value=0.63 Score=44.49 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=44.0
Q ss_pred CCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMS 110 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~ 110 (240)
.+..+|=+|.|.|.|+..+-...+ .+++|||+||.|++.+.+...... .+.+++-.|.++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~ 356 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLD 356 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchH
Confidence 356789999999999988765543 799999999999999987653221 335555555544
No 322
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=78.02 E-value=1.4 Score=37.57 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=33.9
Q ss_pred HHHHcCCCCCCEEEEECCchhHHHHHHHhhC-C-CeEEEEeCCc
Q psy17126 43 IVRNAGTITGNEVCEVGPGPGSITRSILNRR-P-ARLVLIEKDP 84 (240)
Q Consensus 43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~-~~V~avEid~ 84 (240)
++...+++++.+|+|+=+|.|.+|+.++... + +.|+++=.+.
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 5556788999999999999999999998763 2 6888876543
No 323
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=77.73 E-value=12 Score=31.58 Aligned_cols=60 Identities=10% Similarity=0.007 Sum_probs=38.3
Q ss_pred CCCEEEEECCchhHHH----HHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 51 TGNEVCEVGPGPGSIT----RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt----~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
.+.++|=.|+ +|.++ ..|++++ .+|++++.++.-...+.+.....+.++.++.+|+.+.+
T Consensus 6 ~~~~vlItGa-sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 69 (262)
T PRK13394 6 NGKTAVVTGA-ASGIGKEIALELARAG-AAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNED 69 (262)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHH
Confidence 3567886665 34444 4444454 68999999886555544433333456888999987754
No 324
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=77.40 E-value=4.8 Score=31.54 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=31.4
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17126 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 200 (240)
Q Consensus 166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~ 200 (240)
..+..++..+||+|+.+..+||-+|+..|.+.+..
T Consensus 28 ~~A~~ic~~lgi~~~~~~~~Lt~~qi~~l~~~i~~ 62 (122)
T CHL00137 28 TSAKEILEKANIDPDIRTKDLTDEQISALREIIEE 62 (122)
T ss_pred HHHHHHHHHcCcCcCcCcccCCHHHHHHHHHHHHH
Confidence 45678899999999999999999999999998864
No 325
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=76.19 E-value=13 Score=31.45 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=50.0
Q ss_pred CCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+.+||=.|+ +|.++..++++. +.+|+.++.++...+.+.+.....+.++.++.+|+.+.. +..++... ..
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~--- 83 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAF-EA--- 83 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHH-HH---
Confidence 4678898885 566665555431 368999998876655544444333356888899987643 12222111 00
Q ss_pred CCCCceEEEecCCCC
Q psy17126 127 EGLPGIRIIGNLPFN 141 (240)
Q Consensus 127 ~~~~~~~VvsNlPY~ 141 (240)
..++.|.||.|.-..
T Consensus 84 ~~~~~d~li~~ag~~ 98 (255)
T PRK07523 84 EIGPIDILVNNAGMQ 98 (255)
T ss_pred hcCCCCEEEECCCCC
Confidence 113467888876543
No 326
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=76.05 E-value=18 Score=31.26 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=55.4
Q ss_pred HHHHHHHhCchhhhccCccccCCHHHHHHHHHHcCCCCCCEEEEECCchhH--HHHHHH--hh-CCCeEEEEeCCcchHH
Q psy17126 14 IRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGS--ITRSIL--NR-RPARLVLIEKDPRFTP 88 (240)
Q Consensus 14 ~~~~~~~~~~~~~k~~gQ~fl~d~~i~~~iv~~~~~~~~~~VLEIG~GtG~--lt~~La--~~-~~~~V~avEid~~m~~ 88 (240)
++.+++... .+|++ ..|.+++.|...+.-.+...++|+.|+-|. .|..|+ .+ .++++++|-.++.-..
T Consensus 11 tkAYl~Tvk------~c~~~-~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~ 83 (218)
T PF07279_consen 11 TKAYLDTVK------MCKKF-KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLS 83 (218)
T ss_pred HHHHHHHHH------Hhhhc-CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHH
Confidence 556665532 23443 257778777776655567899999766442 344443 22 3589999999988765
Q ss_pred HHHHHHhcCC--CCeEEEEcccc
Q psy17126 89 CLDMLAQASP--CPVHFHLGDVM 109 (240)
Q Consensus 89 ~l~~~~~~~~--~~v~vi~~D~~ 109 (240)
..++.+...+ +-++|+.++..
T Consensus 84 ~~~~~l~~~~~~~~vEfvvg~~~ 106 (218)
T PF07279_consen 84 EYKKALGEAGLSDVVEFVVGEAP 106 (218)
T ss_pred HHHHHHhhccccccceEEecCCH
Confidence 5555444333 44688888753
No 327
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=75.75 E-value=5.8 Score=36.08 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=36.2
Q ss_pred cCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHH
Q psy17126 47 AGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLA 94 (240)
Q Consensus 47 ~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~ 94 (240)
+.+..+.+|+-||+|--.....|+.. +.+|.+||+++.-+..-+-+.
T Consensus 59 m~~g~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred HhcCCCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHH
Confidence 34567889999999977676677665 689999999998876544433
No 328
>PF06831 H2TH: Formamidopyrimidine-DNA glycosylase H2TH domain; InterPro: IPR015886 This entry represents a helix-2turn-helix DNA-binding domain found in DNA glycosylase/AP lyase enzymes, which are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Most damage to bases in DNA is repaired by the base excision repair pathway []. These enzymes are primarily from bacteria, and have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC). Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines [, ]. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above (3.2.2 from EC, 4.2.99.18 from EC), but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine []. These protein contains three structural domains: an N-terminal catalytic core domain, a central helix-two turn-helix (H2TH) module and a C-terminal zinc finger []. The N-terminal catalytic domain and the C-terminal zinc finger straddle the DNA with the long axis of the protein oriented roughly orthogonal to the helical axis of the DNA. Residues that contact DNA are located in the catalytic domain and in a beta-hairpin loop formed by the zinc finger []. This entry represents the central domain containing the DNA-binding helix-two turn-helix domain [].; GO: 0003684 damaged DNA binding, 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0008270 zinc ion binding, 0016799 hydrolase activity, hydrolyzing N-glycosyl compounds, 0006289 nucleotide-excision repair; PDB: 3GQ3_A 3JR5_A 3SAT_A 3GPX_A 2F5Q_A 3SBJ_A 3U6S_A 3SAU_A 3SAR_A 2F5P_A ....
Probab=75.72 E-value=4.8 Score=29.76 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=32.9
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHHHHhh
Q psy17126 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEE 204 (240)
Q Consensus 166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~~~~~ 204 (240)
-..+++|-.+||.|..++.+||.+++..|++.+.+.+.+
T Consensus 42 iy~~EiLf~a~i~P~~~~~~L~~~~~~~l~~~~~~vl~~ 80 (92)
T PF06831_consen 42 IYADEILFRAGIHPERPASSLSEEELRRLHEAIKRVLRE 80 (92)
T ss_dssp HHHHHHHHHTTB-TTSBGGGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999988775443
No 329
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=75.69 E-value=11 Score=33.11 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=36.0
Q ss_pred CCCCCCEEEEECCc-hhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 48 GTITGNEVCEVGPG-PGSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 48 ~~~~~~~VLEIG~G-tG~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
.+.++++||-.|+| .|.++..+++....+|++++.++...+.+++
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 46678899988887 4888888888655689999999988877754
No 330
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=75.05 E-value=12 Score=33.54 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=36.6
Q ss_pred HcCCCCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 46 NAGTITGNEVCEVGPGP-GSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 46 ~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
...+.++++|+=.|+|+ |.++..+++....+|++++.+++-++.+++
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 35677899999999976 777777777644689999999887777654
No 331
>TIGR03629 arch_S13P archaeal ribosomal protein S13P. This model describes exclusively the archaeal ribosomal protein S13P. It excludes the homologous eukaryotic 40S ribosomal protein S18 and bacterial 30S ribosomal protein S13.
Probab=74.75 E-value=4 Score=32.90 Aligned_cols=45 Identities=13% Similarity=0.122 Sum_probs=36.7
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCeee
Q psy17126 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYE 210 (240)
Q Consensus 166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~~~~~~p~~~~ 210 (240)
..+..++..+||+++.|..+||-+|...|.+.+...--..|.|+.
T Consensus 32 ~~a~~I~~~lgi~~~~~~~~Lt~~qi~~l~~~i~~~~~~iP~w~~ 76 (144)
T TIGR03629 32 RFARAIARKLGVDPNAKLGYLDDEEIEKLEEAVENYEYGIPSWLL 76 (144)
T ss_pred HHHHHHHHHcCcCCCCCcccCCHHHHHHHHHHHHhccccCCHHHh
Confidence 456788999999999999999999999999998763334566544
No 332
>TIGR03631 bact_S13 30S ribosomal protein S13. This model describes bacterial ribosomal protein S13, to the exclusion of the homologous archaeal S13P and eukaryotic ribosomal protein S18. This model identifies some (but not all) instances of chloroplast and mitochondrial S13, which is of bacterial type.
Probab=74.57 E-value=5.8 Score=30.61 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=31.2
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17126 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 200 (240)
Q Consensus 166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~ 200 (240)
..+..++..+|++|+.+..+||.+|+..|.+.+..
T Consensus 26 ~~a~~i~~~lgi~~~~~~~~L~~~qi~~l~~~l~~ 60 (113)
T TIGR03631 26 TRARKILEKAGIDPDKRVKDLTEEELNAIREEIEA 60 (113)
T ss_pred HHHHHHHHHhCcCcccccccCCHHHHHHHHHHHHh
Confidence 45678899999999999999999999999998853
No 333
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=74.18 E-value=7.5 Score=36.25 Aligned_cols=92 Identities=11% Similarity=0.016 Sum_probs=59.7
Q ss_pred CCCEEEEECCchhHHHHHHHhh--CCCeEEEEeCCcchHHHHHHHHhcCC--C-CeEEEEcccccccccccchhhhcccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNR--RPARLVLIEKDPRFTPCLDMLAQASP--C-PVHFHLGDVMSFTMQNMFSEDRRRDW 125 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~--~~~~V~avEid~~m~~~l~~~~~~~~--~-~v~vi~~D~~~~~~~~~~~~~~~~~~ 125 (240)
..-+|||.=+|||.-+...+.. +..+|++-|+|+..++..++|++..+ . ++++.+.|+..+=. . .
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-~--~------- 118 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-S--R------- 118 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-H--S-------
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-h--c-------
Confidence 3458999999999999888876 23799999999999999999876543 3 68898999865311 0 0
Q ss_pred cCCCCceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126 126 SEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155 (240)
Q Consensus 126 ~~~~~~~~VvsNlPY~Iss~il~~ll~~~~ 155 (240)
...+|+|=-. ||.-.+|.|-..+....
T Consensus 119 --~~~fD~IDlD-PfGSp~pfldsA~~~v~ 145 (377)
T PF02005_consen 119 --QERFDVIDLD-PFGSPAPFLDSALQAVK 145 (377)
T ss_dssp --TT-EEEEEE---SS--HHHHHHHHHHEE
T ss_pred --cccCCEEEeC-CCCCccHhHHHHHHHhh
Confidence 0234444333 67777777777666554
No 334
>PRK05179 rpsM 30S ribosomal protein S13; Validated
Probab=74.09 E-value=6 Score=31.00 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=31.4
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17126 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 200 (240)
Q Consensus 166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~ 200 (240)
..+..++..+|++|+.+..+||.+|+..|.+.+.+
T Consensus 28 ~~a~~i~~~lgi~~~~~~~~L~~~qi~~l~~~i~~ 62 (122)
T PRK05179 28 TRAKEILAAAGIDPDTRVKDLTDEELDKIREEIDK 62 (122)
T ss_pred HHHHHHHHHhCcCcccccccCCHHHHHHHHHHHHh
Confidence 45678899999999999999999999999998864
No 335
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=74.08 E-value=17 Score=30.46 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=34.5
Q ss_pred CCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 50 ITGNEVCEVGPGP-GSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 50 ~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
.++.+||-.|+|+ |..+..+++....+|++++.++...+.++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 6789999999995 777777777655799999999877666653
No 336
>PRK07478 short chain dehydrogenase; Provisional
Probab=73.83 E-value=19 Score=30.47 Aligned_cols=84 Identities=13% Similarity=0.022 Sum_probs=48.2
Q ss_pred CCCEEEEECCchh--H-HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPG--S-ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG--~-lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+.++|=.|++.| . ++..|++.+ .+|+.+..++.-++.+.+.....+.++.++.+|+.+.+ ...++... ...|
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~- 81 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREG-AKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALA-VERF- 81 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH-HHhc-
Confidence 3567887776543 1 234445554 68999998876655554444333457888999987653 11222111 1112
Q ss_pred CCCCceEEEecCC
Q psy17126 127 EGLPGIRIIGNLP 139 (240)
Q Consensus 127 ~~~~~~~VvsNlP 139 (240)
+..|.+|.|--
T Consensus 82 --~~id~li~~ag 92 (254)
T PRK07478 82 --GGLDIAFNNAG 92 (254)
T ss_pred --CCCCEEEECCC
Confidence 35688887764
No 337
>PRK07063 short chain dehydrogenase; Provisional
Probab=73.59 E-value=19 Score=30.59 Aligned_cols=83 Identities=14% Similarity=0.130 Sum_probs=48.5
Q ss_pred CCCEEEEECCchhHHH----HHHHhhCCCeEEEEeCCcchHHHHHHHHhc--CCCCeEEEEccccccc-ccccchhhhcc
Q psy17126 51 TGNEVCEVGPGPGSIT----RSILNRRPARLVLIEKDPRFTPCLDMLAQA--SPCPVHFHLGDVMSFT-MQNMFSEDRRR 123 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt----~~La~~~~~~V~avEid~~m~~~l~~~~~~--~~~~v~vi~~D~~~~~-~~~~~~~~~~~ 123 (240)
.+++||=.|++. .++ ..|++++ .+|+.++.++.-.+.+.+.... .+.++.++.+|+.+.. +...+... ..
T Consensus 6 ~~k~vlVtGas~-gIG~~~a~~l~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~ 82 (260)
T PRK07063 6 AGKVALVTGAAQ-GIGAAIARAFAREG-AAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAA-EE 82 (260)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHH-HH
Confidence 467888888754 344 4444454 6899999887766555443332 2356888999987643 22222211 11
Q ss_pred cccCCCCceEEEecCC
Q psy17126 124 DWSEGLPGIRIIGNLP 139 (240)
Q Consensus 124 ~~~~~~~~~~VvsNlP 139 (240)
.| +..|.+|.|--
T Consensus 83 ~~---g~id~li~~ag 95 (260)
T PRK07063 83 AF---GPLDVLVNNAG 95 (260)
T ss_pred Hh---CCCcEEEECCC
Confidence 12 35678887754
No 338
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.51 E-value=21 Score=29.83 Aligned_cols=83 Identities=16% Similarity=0.108 Sum_probs=47.6
Q ss_pred CCCEEEEECCchhHHHHHHH----hhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126 51 TGNEVCEVGPGPGSITRSIL----NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW 125 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La----~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~ 125 (240)
++.++|=.|+ +|.++..++ +++ .+|+.++.++.-++.+.+.....+.++.+++.|+.+.+ ..+++... ...|
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~ 80 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKG-AKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQI-AEDF 80 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH-HHHc
Confidence 4678888886 344444443 343 68999999876555444433333467888999986642 12222110 0111
Q ss_pred cCCCCceEEEecCC
Q psy17126 126 SEGLPGIRIIGNLP 139 (240)
Q Consensus 126 ~~~~~~~~VvsNlP 139 (240)
++.|.||.|.-
T Consensus 81 ---~~id~vi~~ag 91 (253)
T PRK08217 81 ---GQLNGLINNAG 91 (253)
T ss_pred ---CCCCEEEECCC
Confidence 34688888764
No 339
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=73.41 E-value=18 Score=30.13 Aligned_cols=86 Identities=14% Similarity=0.087 Sum_probs=48.0
Q ss_pred CCCEEEEECCchhHHHHHH----HhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126 51 TGNEVCEVGPGPGSITRSI----LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW 125 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~L----a~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~ 125 (240)
.+.+||=.|+ +|.++..+ ++++ .+|+++..++.-...+.........++.++.+|+.+.. +...+... ...|
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~~~ 81 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADG-AEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAG-VEDF 81 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH-HHHh
Confidence 3567887775 45555544 4444 68999998865544433333333356889999987642 12222110 0111
Q ss_pred cCCCCceEEEecCCCCC
Q psy17126 126 SEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 126 ~~~~~~~~VvsNlPY~I 142 (240)
++.|.||.|.....
T Consensus 82 ---~~~d~vi~~ag~~~ 95 (251)
T PRK12826 82 ---GRLDILVANAGIFP 95 (251)
T ss_pred ---CCCCEEEECCCCCC
Confidence 24678887765433
No 340
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=72.86 E-value=21 Score=30.03 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=24.3
Q ss_pred CCCEEEEECCc-hhHHH-HHHHhhCCCeEEEEeCC
Q psy17126 51 TGNEVCEVGPG-PGSIT-RSILNRRPARLVLIEKD 83 (240)
Q Consensus 51 ~~~~VLEIG~G-tG~lt-~~La~~~~~~V~avEid 83 (240)
...+|+=+||| .|... ..|+..+.++++.+|.|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 35689999998 46544 45555556799999988
No 341
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=72.45 E-value=2 Score=38.00 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=29.7
Q ss_pred CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHH
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLA 94 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~ 94 (240)
..|.++||||||+-..-..-+.....+++..|..+.-.+.+++.+
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl 99 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWL 99 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHH
Confidence 357899999999955533222233478999999998888776654
No 342
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=72.17 E-value=37 Score=32.53 Aligned_cols=88 Identities=15% Similarity=0.090 Sum_probs=56.3
Q ss_pred CCEEEEECCchhHHH-HHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCC
Q psy17126 52 GNEVCEVGPGPGSIT-RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt-~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~ 130 (240)
+++|+=+|=|--.++ ..++.+....|++.|.++........ .....++.+..+.-...++ ..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~--~~~~~~i~~~~g~~~~~~~---------------~~ 69 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQ--PLLLEGIEVELGSHDDEDL---------------AE 69 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhh--hhhccCceeecCccchhcc---------------cc
Confidence 678888988755444 34444334799999998887222222 1112567777765544211 24
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126 131 GIRIIGNLPFNVSTPLIIKWIQAISE 156 (240)
Q Consensus 131 ~~~VvsNlPY~Iss~il~~ll~~~~~ 156 (240)
+|.||-||=...+.|++.+.......
T Consensus 70 ~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 70 FDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred CCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 68999998888888988777665444
No 343
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=72.03 E-value=5 Score=31.33 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=31.6
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17126 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 200 (240)
Q Consensus 166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~ 200 (240)
..+.++++++||+|..|..+||-+|...|.+.+.+
T Consensus 28 ~~a~~I~~~~gi~~~~r~~eLteeei~~ir~~i~~ 62 (121)
T COG0099 28 RRAKEICKKAGIDPDKRVGELTEEEIERLRDAIQN 62 (121)
T ss_pred HHHHHHHHHcCCCHhHhhccCCHHHHHHHHHHHHh
Confidence 45778999999999999999999999999998874
No 344
>PRK06194 hypothetical protein; Provisional
Probab=71.98 E-value=21 Score=30.73 Aligned_cols=83 Identities=12% Similarity=-0.048 Sum_probs=46.8
Q ss_pred CCEEEEECCchhHHHH----HHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 52 GNEVCEVGPGPGSITR----SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~----~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
+.+||=.|.+ |.++. .|++++ .+|+.++.+...++...+.....+.++.++.+|+.+.. +..++... +.
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~----~~ 79 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALG-MKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAA----LE 79 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH----HH
Confidence 5678866754 44444 444454 68999998876555443333222356888999997643 22222110 11
Q ss_pred CCCCceEEEecCCC
Q psy17126 127 EGLPGIRIIGNLPF 140 (240)
Q Consensus 127 ~~~~~~~VvsNlPY 140 (240)
..++.|.||.|--.
T Consensus 80 ~~g~id~vi~~Ag~ 93 (287)
T PRK06194 80 RFGAVHLLFNNAGV 93 (287)
T ss_pred HcCCCCEEEECCCC
Confidence 11346888887654
No 345
>KOG2811|consensus
Probab=71.66 E-value=11 Score=35.07 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=39.4
Q ss_pred CCCEEEEECCchhHHHHHHHhhCC-CeEEE---EeCCcchHHHHHHHHhcCCCCeEEEEccccccccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRRP-ARLVL---IEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNM 116 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~~-~~V~a---vEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~ 116 (240)
++..++|.|||-|-|+.+++.... ..++- +|....-...=+........-++=+..|+.++.+..+
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~vi~R~riDI~dLkL~~i 251 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSLVIKRIRIDIEDLKLNAI 251 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCcchhheeEeeHHhcCcccc
Confidence 346899999999999999987532 34444 5543221111111111112446667889988887654
No 346
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=71.52 E-value=13 Score=36.91 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=38.1
Q ss_pred CCEEEEECCchhHH-HHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 52 GNEVCEVGPGPGSI-TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 52 ~~~VLEIG~GtG~l-t~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
..+|+=+|+|.=.. ....+......++++|.|++.++.+++ ....++.||+.+.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~------~g~~v~~GDat~~~ 455 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK------FGMKVFYGDATRMD 455 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh------cCCeEEEEeCCCHH
Confidence 35788888875332 223233223689999999999888864 24679999998865
No 347
>PRK06949 short chain dehydrogenase; Provisional
Probab=71.37 E-value=18 Score=30.45 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=49.3
Q ss_pred CCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+.+||=.| |+|.++..+++.. ..+|+++..+++-++.+.........+++++.+|+.+.+ +...+... ...+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~- 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHA-ETEA- 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH-HHhc-
Confidence 467888888 5555555554431 358999999887766555443333457889999987642 11211110 0011
Q ss_pred CCCCceEEEecCC
Q psy17126 127 EGLPGIRIIGNLP 139 (240)
Q Consensus 127 ~~~~~~~VvsNlP 139 (240)
++.|.+|.|-.
T Consensus 85 --~~~d~li~~ag 95 (258)
T PRK06949 85 --GTIDILVNNSG 95 (258)
T ss_pred --CCCCEEEECCC
Confidence 34677887765
No 348
>PRK08589 short chain dehydrogenase; Validated
Probab=71.17 E-value=23 Score=30.55 Aligned_cols=84 Identities=8% Similarity=-0.001 Sum_probs=46.3
Q ss_pred CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+.++|=.|++.|. ++..|++.+ .+|++++.++.. +.+.+.....+.++.++.+|+.+.. ...++... ...|
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G-~~vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~~~- 80 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEG-AYVLAVDIAEAV-SETVDKIKSNGGKAKAYHVDISDEQQVKDFASEI-KEQF- 80 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCcHHH-HHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH-HHHc-
Confidence 45678878875542 234455554 699999988433 3332222333456888999987643 11222111 0111
Q ss_pred CCCCceEEEecCCC
Q psy17126 127 EGLPGIRIIGNLPF 140 (240)
Q Consensus 127 ~~~~~~~VvsNlPY 140 (240)
+..|.+|.|--+
T Consensus 81 --g~id~li~~Ag~ 92 (272)
T PRK08589 81 --GRVDVLFNNAGV 92 (272)
T ss_pred --CCcCEEEECCCC
Confidence 346888887643
No 349
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=71.15 E-value=33 Score=29.40 Aligned_cols=116 Identities=14% Similarity=0.125 Sum_probs=63.0
Q ss_pred EEEEECCch--hHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc-cccchhhhcccccCCCC
Q psy17126 54 EVCEVGPGP--GSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM-QNMFSEDRRRDWSEGLP 130 (240)
Q Consensus 54 ~VLEIG~Gt--G~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~-~~~~~~~~~~~~~~~~~ 130 (240)
+++=+|||. +.++..|.+. ...|++||.|++-++.... . ....+++++|..+.+. .+. + -..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~~~~~~~~--~--~~~~~~v~gd~t~~~~L~~a-------g---i~~ 66 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEERVEEFLA--D--ELDTHVVIGDATDEDVLEEA-------G---IDD 66 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHHHHHHHhh--h--hcceEEEEecCCCHHHHHhc-------C---CCc
Confidence 456677774 3334455554 3699999999998766322 1 1347899999987542 111 0 124
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhccccccccchhh-hhHHHHHHHcCCCCCCCCC
Q psy17126 131 GIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKR-QLVVSLLERACVKPILRPY 184 (240)
Q Consensus 131 ~~~VvsNlPY~Iss~il~~ll~~~~~~~~~~~~~~-~~~~~~l~~~gi~~~~R~e 184 (240)
+|.+|+-..-....-++-.+....-..---+-..+ ....+.+.++|++....||
T Consensus 67 aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe 121 (225)
T COG0569 67 ADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPE 121 (225)
T ss_pred CCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECHH
Confidence 57777655544444343333322000000111112 4566778888877666664
No 350
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=70.96 E-value=9.6 Score=37.23 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHhccccccccchh-----h---hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy17126 139 PFNVSTPLIIKWIQAISENLLFPKHK-----R---QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMC 202 (240)
Q Consensus 139 PY~Iss~il~~ll~~~~~~~~~~~~~-----~---~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~~~ 202 (240)
|+.+....|.+++..... ..-..++ + ..+++++..+|++++.+|..|+-+|..+|.++++...
T Consensus 238 P~gv~~~~l~~m~~~t~~-~~l~~fL~~~f~~v~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 308 (535)
T PRK04184 238 PHGVDLGTLKRMAARTKR-RTLKEFLVEEFSRVGDKTADEILEKAGLDPNKKPKELTREELERLVEAFKKYK 308 (535)
T ss_pred CCccCHHHHHHHHHhccc-CCHHHHHHHhhcccCHHHHHHHHHHcCCCCCCChhhCCHHHHHHHHHHHHhcc
Confidence 688999999999987654 1111222 2 5688899999999999999999999999999998743
No 351
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.44 E-value=26 Score=27.42 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=37.5
Q ss_pred CEEEEECCchhH-HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccccc
Q psy17126 53 NEVCEVGPGPGS-ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQ 114 (240)
Q Consensus 53 ~~VLEIG~GtG~-lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~ 114 (240)
.+|+|||-|-=. .+..|++++ ..|+++|+.+. .+ +..++++..|+.+-+++
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g-~dv~atDI~~~---~a-------~~g~~~v~DDitnP~~~ 66 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERG-FDVLATDINEK---TA-------PEGLRFVVDDITNPNIS 66 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcC-CcEEEEecccc---cC-------cccceEEEccCCCccHH
Confidence 389999988643 346666775 79999999987 11 24588999999886654
No 352
>PRK05650 short chain dehydrogenase; Provisional
Probab=70.37 E-value=22 Score=30.45 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=44.4
Q ss_pred EEEEECCchhHHHHH----HHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccCC
Q psy17126 54 EVCEVGPGPGSITRS----ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSEG 128 (240)
Q Consensus 54 ~VLEIG~GtG~lt~~----La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~~ 128 (240)
+||=.|+ +|.++.. |++++ .+|+.++.+..-.+.+.......+.++.++.+|+.+.. +..++... ...|
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i-~~~~--- 75 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREG-WRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQAC-EEKW--- 75 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH-HHHc---
Confidence 4666665 4444444 44443 68999998866544443333333467888999987643 12221110 1112
Q ss_pred CCceEEEecCCC
Q psy17126 129 LPGIRIIGNLPF 140 (240)
Q Consensus 129 ~~~~~VvsNlPY 140 (240)
++.|.||.|--.
T Consensus 76 ~~id~lI~~ag~ 87 (270)
T PRK05650 76 GGIDVIVNNAGV 87 (270)
T ss_pred CCCCEEEECCCC
Confidence 346788877543
No 353
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=70.20 E-value=21 Score=33.70 Aligned_cols=56 Identities=23% Similarity=0.215 Sum_probs=38.3
Q ss_pred cccCCHHHHHHHHHHcCC-CCCCEEEEECCchhHHH-HHHHhhCCCeEEEEeCCcchH
Q psy17126 32 NFLFEPRLTDKIVRNAGT-ITGNEVCEVGPGPGSIT-RSILNRRPARLVLIEKDPRFT 87 (240)
Q Consensus 32 ~fl~d~~i~~~iv~~~~~-~~~~~VLEIG~GtG~lt-~~La~~~~~~V~avEid~~m~ 87 (240)
.|.+-...++.+++..++ ..+++|+=+|+|.=... ...++....+|+++|.|+.-.
T Consensus 174 ~yg~g~s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~ 231 (406)
T TIGR00936 174 RYGTGQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRA 231 (406)
T ss_pred ccccchhHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhH
Confidence 344455667777776553 57899999999984443 444443346999999998543
No 354
>PRK05866 short chain dehydrogenase; Provisional
Probab=69.90 E-value=24 Score=31.00 Aligned_cols=84 Identities=12% Similarity=0.084 Sum_probs=48.3
Q ss_pred CCCEEEEECCchhHHHHH----HHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc-cccchhhhcccc
Q psy17126 51 TGNEVCEVGPGPGSITRS----ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM-QNMFSEDRRRDW 125 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~----La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~-~~~~~~~~~~~~ 125 (240)
.+.+||=.|++. .++.. |++++ .+|++++.+.+-++.+.+.....+.++.++.+|+.+.+. ...+... ...+
T Consensus 39 ~~k~vlItGasg-gIG~~la~~La~~G-~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~-~~~~ 115 (293)
T PRK05866 39 TGKRILLTGASS-GIGEAAAEQFARRG-ATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADV-EKRI 115 (293)
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH-HHHc
Confidence 357888888643 44444 44443 699999998766655544333334567889999876431 1221110 0111
Q ss_pred cCCCCceEEEecCCC
Q psy17126 126 SEGLPGIRIIGNLPF 140 (240)
Q Consensus 126 ~~~~~~~~VvsNlPY 140 (240)
+..|.+|.|--.
T Consensus 116 ---g~id~li~~AG~ 127 (293)
T PRK05866 116 ---GGVDILINNAGR 127 (293)
T ss_pred ---CCCCEEEECCCC
Confidence 356888877543
No 355
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=69.82 E-value=21 Score=30.12 Aligned_cols=84 Identities=10% Similarity=0.010 Sum_probs=49.3
Q ss_pred CCCEEEEECCchhHHHHHHH----hhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126 51 TGNEVCEVGPGPGSITRSIL----NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW 125 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La----~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~ 125 (240)
.+.+||=.|+ +|.++..++ +++ .+|+.++.+++-+..+.......+.++.++.+|+.+.. +...+... ...|
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~~~ 86 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAG-AHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARI-DAEH 86 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH-HHhc
Confidence 4678888885 455555444 444 69999999876655544433334456889999987643 12222111 0111
Q ss_pred cCCCCceEEEecCCC
Q psy17126 126 SEGLPGIRIIGNLPF 140 (240)
Q Consensus 126 ~~~~~~~~VvsNlPY 140 (240)
++.|.||.|.-+
T Consensus 87 ---~~id~vi~~ag~ 98 (256)
T PRK06124 87 ---GRLDILVNNVGA 98 (256)
T ss_pred ---CCCCEEEECCCC
Confidence 346778877554
No 356
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=69.60 E-value=26 Score=30.13 Aligned_cols=84 Identities=12% Similarity=0.133 Sum_probs=48.0
Q ss_pred CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+.++|=.|++.|. ++..|++.+ .+|+.++.+....+.+.+.....+.++.++.+|+.+.. +..++... ...|
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~-~~~~- 85 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAG-AKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQI-LEDF- 85 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH-HHHc-
Confidence 35678878875432 234444444 68999998876555444433333456888999987643 22222211 0111
Q ss_pred CCCCceEEEecCC
Q psy17126 127 EGLPGIRIIGNLP 139 (240)
Q Consensus 127 ~~~~~~~VvsNlP 139 (240)
++.|.+|.|-.
T Consensus 86 --g~id~li~~ag 96 (278)
T PRK08277 86 --GPCDILINGAG 96 (278)
T ss_pred --CCCCEEEECCC
Confidence 35688887754
No 357
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=69.14 E-value=29 Score=29.41 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=47.3
Q ss_pred CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc-cccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM-QNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~-~~~~~~~~~~~~~ 126 (240)
.+.+||=.|++.|. ++..|++.+ .+|+.+..+.. .+.+.+.....+.++.++.+|+.+.+- ..++... ...|
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~-~~~~- 89 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAG-ADIIITTHGTN-WDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEA-LEEF- 89 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCcH-HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH-HHHc-
Confidence 46788888886542 233444554 68988888733 333443333334678899999987431 1222111 1112
Q ss_pred CCCCceEEEecCCC
Q psy17126 127 EGLPGIRIIGNLPF 140 (240)
Q Consensus 127 ~~~~~~~VvsNlPY 140 (240)
+..|.+|.|..+
T Consensus 90 --g~id~li~~ag~ 101 (258)
T PRK06935 90 --GKIDILVNNAGT 101 (258)
T ss_pred --CCCCEEEECCCC
Confidence 346788877644
No 358
>PRK07677 short chain dehydrogenase; Provisional
Probab=68.64 E-value=25 Score=29.69 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=36.7
Q ss_pred CEEEEECCchh--H-HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 53 NEVCEVGPGPG--S-ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 53 ~~VLEIG~GtG--~-lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
+++|=.|++.| . ++..+++++ .+|++++.++.-.+.+.+.....+.++.++.+|+.+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 62 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEG-ANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNP 62 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCH
Confidence 56777777544 1 334444454 6899999887665555443333345788899998763
No 359
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=68.62 E-value=13 Score=36.12 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=34.9
Q ss_pred CCCCCCEEEEECCchhHH-HHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 48 GTITGNEVCEVGPGPGSI-TRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 48 ~~~~~~~VLEIG~GtG~l-t~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
+..++++|+=+|+|.=.+ +...++..+..|+++|.+++-++.+++
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 345789999999998554 556666544689999999988887764
No 360
>PF00416 Ribosomal_S13: Ribosomal protein S13/S18; InterPro: IPR001892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S13 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S13 is known to be involved in binding fMet-tRNA and, hence, in the initiation of translation. It is a basic protein of 115 to 177 amino-acid residues that contains thee helices and a beta-hairpin in the core of the protein, forming a helix-two turns-helix (H2TH) motif, and a non-globular C-terminal extension. This family of ribosomal proteins is present in prokaryotes, eukaryotes and archaea [, ].; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBN_M 2QBB_M 3I1M_M 3OFP_M 3OFX_M 3OFO_M 1VS5_M 3OAQ_M 2QAL_M 3J18_M ....
Probab=68.48 E-value=10 Score=28.73 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=30.4
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17126 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 200 (240)
Q Consensus 166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~ 200 (240)
..+..++..+|++|+.+..+||-+|+..|.+.+..
T Consensus 26 ~~A~~Ic~~lgi~~~~~~~~Ls~~~i~~l~~~i~~ 60 (107)
T PF00416_consen 26 RKAKQICKKLGINPNKKVGDLSDEQIDKLRKIIEK 60 (107)
T ss_dssp HHHHHHHHHTTS-SSSBTTTSTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCChhhhcccCCHHHHHHHHHHHHH
Confidence 45778899999999999999999999999988765
No 361
>PTZ00134 40S ribosomal protein S18; Provisional
Probab=68.09 E-value=9 Score=31.29 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=31.8
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy17126 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 200 (240)
Q Consensus 166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~ 200 (240)
..+..++..+||+|+.|..+||.+|...|.+.+.+
T Consensus 41 ~~A~~I~~~lgi~~~~~~~~Lt~~qi~~l~~~i~~ 75 (154)
T PTZ00134 41 RFAYLVCKKAGIDVTKRAGELTAEEIEKIVEIIAN 75 (154)
T ss_pred HHHHHHHHHcCcCcCCCcccCCHHHHHHHHHHHhc
Confidence 46778999999999999999999999999998865
No 362
>PRK12829 short chain dehydrogenase; Provisional
Probab=67.57 E-value=27 Score=29.49 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=39.5
Q ss_pred CCCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
.++.++|=.|++ |.++..+++.. ..+|+++..++...+.+.+.... .++.++.+|+.+..
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~ 71 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG--AKVTATVADVADPA 71 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--CceEEEEccCCCHH
Confidence 467899988875 66666555431 36899999987766554432221 25788899987643
No 363
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=67.13 E-value=25 Score=29.78 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=50.7
Q ss_pred CCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+.++|=.| |+|.++..++++. +.+|+.++.+..-.+.+.......+.++.++.+|+.+.+ +...+... ...|
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~-~~~~- 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEET-LERF- 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHH-HHHh-
Confidence 467888888 5566666655431 368999998876655555443333456888999998643 11211110 0011
Q ss_pred CCCCceEEEecCCC
Q psy17126 127 EGLPGIRIIGNLPF 140 (240)
Q Consensus 127 ~~~~~~~VvsNlPY 140 (240)
++.|.||.|-..
T Consensus 88 --~~id~vi~~ag~ 99 (259)
T PRK08213 88 --GHVDILVNNAGA 99 (259)
T ss_pred --CCCCEEEECCCC
Confidence 346888887654
No 364
>PRK08643 acetoin reductase; Validated
Probab=66.89 E-value=35 Score=28.79 Aligned_cols=82 Identities=9% Similarity=-0.010 Sum_probs=46.7
Q ss_pred CEEEEECCchhHHHHHHH----hhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccC
Q psy17126 53 NEVCEVGPGPGSITRSIL----NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSE 127 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La----~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~ 127 (240)
+++|=.|+. |.++..++ +++ .+|+.++.++...+.+.......+.++.++.+|+.+.+ +...+... ...+
T Consensus 3 k~~lItGas-~giG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~~~-- 77 (256)
T PRK08643 3 KVALVTGAG-QGIGFAIAKRLVEDG-FKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQV-VDTF-- 77 (256)
T ss_pred CEEEEECCC-ChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH-HHHc--
Confidence 466766744 44555444 443 68999998876665554443333456888899987753 12222111 0011
Q ss_pred CCCceEEEecCCC
Q psy17126 128 GLPGIRIIGNLPF 140 (240)
Q Consensus 128 ~~~~~~VvsNlPY 140 (240)
++.|.||.|-.+
T Consensus 78 -~~id~vi~~ag~ 89 (256)
T PRK08643 78 -GDLNVVVNNAGV 89 (256)
T ss_pred -CCCCEEEECCCC
Confidence 346788887654
No 365
>KOG0022|consensus
Probab=66.88 E-value=16 Score=33.61 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=39.8
Q ss_pred HHHHcCCCCCCEEEEECCchhHHHHHHHhh--CCCeEEEEeCCcchHHHHHH
Q psy17126 43 IVRNAGTITGNEVCEVGPGPGSITRSILNR--RPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 43 iv~~~~~~~~~~VLEIG~GtG~lt~~La~~--~~~~V~avEid~~m~~~l~~ 92 (240)
....+.+.+|++|.=+|+|.=.|+...-.+ ++++++|||++++-.+.+++
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 455567889999999999987776544433 46899999999999888875
No 366
>PRK08862 short chain dehydrogenase; Provisional
Probab=66.51 E-value=30 Score=29.21 Aligned_cols=83 Identities=13% Similarity=0.046 Sum_probs=51.2
Q ss_pred CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+.++|=.|++.|. ++..|++.+ .+|+.+..++..++.+.+.....+.++..+..|+.+.+ ...++... ...|
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G-~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~- 80 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLG-ATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAI-EQQF- 80 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHH-HHHh-
Confidence 46788888988875 556666665 68999998887766554444333455777778876543 12222211 0111
Q ss_pred CCC-CceEEEecC
Q psy17126 127 EGL-PGIRIIGNL 138 (240)
Q Consensus 127 ~~~-~~~~VvsNl 138 (240)
+ ..|.+|.|-
T Consensus 81 --g~~iD~li~na 91 (227)
T PRK08862 81 --NRAPDVLVNNW 91 (227)
T ss_pred --CCCCCEEEECC
Confidence 3 578888886
No 367
>PRK06172 short chain dehydrogenase; Provisional
Probab=66.21 E-value=33 Score=28.84 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=49.5
Q ss_pred CCCEEEEECCchhHHHHHH----HhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126 51 TGNEVCEVGPGPGSITRSI----LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW 125 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~L----a~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~ 125 (240)
.+.+||=.|++ |.++..+ ++.+ .+|+.++.++.-++.+.+.....+.++.++.+|+.+.. +..++... ...|
T Consensus 6 ~~k~ilItGas-~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~-~~~~ 82 (253)
T PRK06172 6 SGKVALVTGGA-AGIGRATALAFAREG-AKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQT-IAAY 82 (253)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH-HHHh
Confidence 45788888864 4444444 4443 68999999876655544444444567889999997643 22222111 0111
Q ss_pred cCCCCceEEEecCCC
Q psy17126 126 SEGLPGIRIIGNLPF 140 (240)
Q Consensus 126 ~~~~~~~~VvsNlPY 140 (240)
++.|.||.|--+
T Consensus 83 ---g~id~li~~ag~ 94 (253)
T PRK06172 83 ---GRLDYAFNNAGI 94 (253)
T ss_pred ---CCCCEEEECCCC
Confidence 356788877543
No 368
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=66.16 E-value=31 Score=29.15 Aligned_cols=85 Identities=12% Similarity=0.043 Sum_probs=48.0
Q ss_pred CCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+.++|=.|++ |.++..++++. ..+|+.++.++.-+..+.......+.++.++.+|+.+.+ +..++... ...|
T Consensus 8 ~~k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~~~- 84 (254)
T PRK08085 8 AGKNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHI-EKDI- 84 (254)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHH-HHhc-
Confidence 45678888854 45554444331 369999998876555443333322356778888987643 12222110 1112
Q ss_pred CCCCceEEEecCCC
Q psy17126 127 EGLPGIRIIGNLPF 140 (240)
Q Consensus 127 ~~~~~~~VvsNlPY 140 (240)
++.|.||.|.-+
T Consensus 85 --~~id~vi~~ag~ 96 (254)
T PRK08085 85 --GPIDVLINNAGI 96 (254)
T ss_pred --CCCCEEEECCCc
Confidence 356888888754
No 369
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=66.07 E-value=15 Score=33.67 Aligned_cols=56 Identities=13% Similarity=0.222 Sum_probs=32.8
Q ss_pred CCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC----CCCeEEEEcccccccccccc
Q psy17126 49 TITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS----PCPVHFHLGDVMSFTMQNMF 117 (240)
Q Consensus 49 ~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~----~~~v~vi~~D~~~~~~~~~~ 117 (240)
....-+|+|+||.+|.-|..+... .++.+++..... .+.++++..|...=||..+|
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~-------------ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF 73 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSN-------------IIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLF 73 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHH-------------HHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHH
T ss_pred CCCceEEEecCCCCCccHHHHHHH-------------HHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHH
Confidence 345578999999999999988765 233444333221 24578888887766665543
No 370
>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed
Probab=65.76 E-value=12 Score=30.35 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=35.2
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHH-HHhhCCCee
Q psy17126 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD-MCEEMPGLY 209 (240)
Q Consensus 166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~-~~~~~p~~~ 209 (240)
..+..+++.+||+++.|..+||-+|...|.+.+.+ .-...|.|.
T Consensus 36 ~~a~~Ic~~lgi~~~~~~~~Lt~~qi~~l~~~i~~~~~~~iP~w~ 80 (149)
T PRK04053 36 RTARAIARKLGLDPNAKLGYLSDEEIEKIEEALEDPAEEGIPSWM 80 (149)
T ss_pred HHHHHHHHHcCcCCCCccCcCCHHHHHHHHHHHHhhccccCchhh
Confidence 45678899999999999999999999999998854 223445443
No 371
>PRK06720 hypothetical protein; Provisional
Probab=65.68 E-value=37 Score=27.61 Aligned_cols=87 Identities=13% Similarity=0.023 Sum_probs=49.3
Q ss_pred CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+..++=.|.|.|. ++..+++.+ .+|+.++.+..-.+.+.+.....+.++.++..|+.+.. +..++... ...|
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~-~~~~- 91 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISIT-LNAF- 91 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH-HHHc-
Confidence 46678888876543 344555554 68999998876554443333233456777888886542 22222111 0112
Q ss_pred CCCCceEEEecCCCCC
Q psy17126 127 EGLPGIRIIGNLPFNV 142 (240)
Q Consensus 127 ~~~~~~~VvsNlPY~I 142 (240)
+..|.+|.|--...
T Consensus 92 --G~iDilVnnAG~~~ 105 (169)
T PRK06720 92 --SRIDMLFQNAGLYK 105 (169)
T ss_pred --CCCCEEEECCCcCC
Confidence 35688898865433
No 372
>PRK11524 putative methyltransferase; Provisional
Probab=65.59 E-value=3.9 Score=36.30 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=23.8
Q ss_pred CCeEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCC
Q psy17126 99 CPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142 (240)
Q Consensus 99 ~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~I 142 (240)
.+-+++++|.+++- ..+ + .+++|.||.+|||++
T Consensus 7 ~~~~i~~gD~~~~l-~~l-~---------~~siDlIitDPPY~~ 39 (284)
T PRK11524 7 EAKTIIHGDALTEL-KKI-P---------SESVDLIFADPPYNI 39 (284)
T ss_pred CCCEEEeccHHHHH-Hhc-c---------cCcccEEEECCCccc
Confidence 45679999998742 221 1 146899999999987
No 373
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=65.52 E-value=26 Score=31.85 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=35.3
Q ss_pred HHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~ 92 (240)
....+.++++||=.|+|+ |.++..+++.... +|++++.+++-.+.+++
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 445677899999999864 5566677775444 79999999887777654
No 374
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.37 E-value=29 Score=28.98 Aligned_cols=84 Identities=14% Similarity=0.068 Sum_probs=48.0
Q ss_pred CCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccC
Q psy17126 52 GNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSE 127 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~ 127 (240)
+.++|=.|+ +|.++..+++.. ..+|++++.++.-.+.........+.++.++.+|+.+.+ +...+... +..
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~ 81 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQL----KNE 81 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHH----HHH
Confidence 467787884 677766654431 369999998876544433333333457888999987643 12222110 001
Q ss_pred CCCceEEEecCCC
Q psy17126 128 GLPGIRIIGNLPF 140 (240)
Q Consensus 128 ~~~~~~VvsNlPY 140 (240)
.+..|.||.|...
T Consensus 82 ~~~id~vi~~ag~ 94 (239)
T PRK07666 82 LGSIDILINNAGI 94 (239)
T ss_pred cCCccEEEEcCcc
Confidence 1346788877644
No 375
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.26 E-value=31 Score=29.46 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=46.4
Q ss_pred CCCEEEEECCchh-HHHH----HHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccc
Q psy17126 51 TGNEVCEVGPGPG-SITR----SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRD 124 (240)
Q Consensus 51 ~~~~VLEIG~GtG-~lt~----~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~ 124 (240)
.++++|=.|+++| .++. .|++.+ .+|+.++.+.+..+.+++..+.. +.+.++.+|+.+.. ...++... ...
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G-~~v~l~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~-~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALG-AELAVTYLNDKARPYVEPLAEEL-DAPIFLPLDVREPGQLEAVFARI-AEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCChhhHHHHHHHHHhh-ccceEEecCcCCHHHHHHHHHHH-HHH
Confidence 4678999998752 4444 444444 68988888765443344333222 23557788887643 22222211 111
Q ss_pred ccCCCCceEEEecCC
Q psy17126 125 WSEGLPGIRIIGNLP 139 (240)
Q Consensus 125 ~~~~~~~~~VvsNlP 139 (240)
| +..|.+|.|--
T Consensus 86 ~---g~ld~lv~nAg 97 (258)
T PRK07533 86 W---GRLDFLLHSIA 97 (258)
T ss_pred c---CCCCEEEEcCc
Confidence 2 45788888853
No 376
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=65.24 E-value=43 Score=31.26 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=66.7
Q ss_pred CCEEEEECCchhHHHHHHHhhCCC-eEEEEeCCcchHHHHHHHHhcC-CCCeEEEEcccccccccccchhhhcccccCCC
Q psy17126 52 GNEVCEVGPGPGSITRSILNRRPA-RLVLIEKDPRFTPCLDMLAQAS-PCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~~~-~V~avEid~~m~~~l~~~~~~~-~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~ 129 (240)
..+|+|.=+|||.=++..+..... +|+.-|++|..++..++|.... +.+..+++.|+-.+= .+. | .
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm-~~~--------~---~ 120 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALL-HEL--------H---R 120 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHH-Hhc--------C---C
Confidence 679999999999999988876433 8999999999999999988654 356777777775431 110 0 1
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhcc
Q psy17126 130 PGIRIIGNLPFNVSTPLIIKWIQAIS 155 (240)
Q Consensus 130 ~~~~VvsNlPY~Iss~il~~ll~~~~ 155 (240)
.|| +|-==||.-..|.+...+....
T Consensus 121 ~fd-~IDiDPFGSPaPFlDaA~~s~~ 145 (380)
T COG1867 121 AFD-VIDIDPFGSPAPFLDAALRSVR 145 (380)
T ss_pred Ccc-EEecCCCCCCchHHHHHHHHhh
Confidence 233 3444478888888888777665
No 377
>PRK07326 short chain dehydrogenase; Provisional
Probab=65.13 E-value=26 Score=29.07 Aligned_cols=59 Identities=14% Similarity=0.004 Sum_probs=37.8
Q ss_pred CCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
.+.+||=+|. +|.++..+++.. ..+|++++.++.-...+.+..... .++.++.+|+.+.
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~ 66 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK-GNVLGLAADVRDE 66 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCCH
Confidence 3568888884 666666555431 358999998876554443322221 5688899998764
No 378
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=65.01 E-value=31 Score=30.85 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=35.1
Q ss_pred HHcCCCCCCEEEEECCc-hhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGPG-PGSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~G-tG~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
....++++++||=.|+| .|.++..+++....+|++++.++.-.+.+++
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA 207 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 34567789999999975 4555566776544689999998877777665
No 379
>PRK10445 endonuclease VIII; Provisional
Probab=65.00 E-value=13 Score=32.73 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=34.5
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHHHHhh
Q psy17126 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEE 204 (240)
Q Consensus 166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~~~~~ 204 (240)
-.++++|-.+||+|.+++.+||.+++.+|.+++.+.+..
T Consensus 170 iyadEiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~~vl~~ 208 (263)
T PRK10445 170 YLRVEILWQAGLTPQHKAKDLNEAQLDALAHALLDIPRL 208 (263)
T ss_pred HHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999988875444
No 380
>PRK09291 short chain dehydrogenase; Provisional
Probab=65.00 E-value=35 Score=28.71 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=35.9
Q ss_pred CEEEEECCchhHHHHHH----HhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 53 NEVCEVGPGPGSITRSI----LNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~L----a~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
.+||=.|++ |.++..+ ++.+ .+|+++..++.-.+.+.......+.++.++.+|+.+.
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 63 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKG-HNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDA 63 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCH
Confidence 467777774 4444444 4443 6899998876655544443333345688899998764
No 381
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=64.33 E-value=29 Score=31.87 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=50.3
Q ss_pred EEEECCchhHHHHHHH----hhCCC-eEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccCC
Q psy17126 55 VCEVGPGPGSITRSIL----NRRPA-RLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSEG 128 (240)
Q Consensus 55 VLEIG~GtG~lt~~La----~~~~~-~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~~ 128 (240)
|+=+|+ |..+..++ ++... +|+..+.+.+-++.+.+.. ...+++.+..|+.+.+ +.++.
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~l~~~~----------- 65 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--LGDRVEAVQVDVNDPESLAELL----------- 65 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----TTTTEEEEE--TTTHHHHHHHH-----------
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--cccceeEEEEecCCHHHHHHHH-----------
Confidence 455777 44443333 33223 8999999988776655322 3478999999998754 33333
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126 129 LPGIRIIGNLPFNVSTPLIIKWIQAISE 156 (240)
Q Consensus 129 ~~~~~VvsNlPY~Iss~il~~ll~~~~~ 156 (240)
...|+||..+|++...+++...++....
T Consensus 66 ~~~dvVin~~gp~~~~~v~~~~i~~g~~ 93 (386)
T PF03435_consen 66 RGCDVVINCAGPFFGEPVARACIEAGVH 93 (386)
T ss_dssp TTSSEEEE-SSGGGHHHHHHHHHHHT-E
T ss_pred hcCCEEEECCccchhHHHHHHHHHhCCC
Confidence 2358999998877666666666665443
No 382
>PRK07791 short chain dehydrogenase; Provisional
Probab=64.29 E-value=44 Score=29.13 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=45.4
Q ss_pred CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCc---------chHHHHHHHHhcCCCCeEEEEccccccc-ccccc
Q psy17126 51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDP---------RFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMF 117 (240)
Q Consensus 51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~---------~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~ 117 (240)
.+.++|=.|++.|. ++..|++.+ .+|+.++.+. +-++.+.+.....+.++.++.+|+.+.+ ...++
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G-~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEG-ARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 56788888876542 233455554 6888888764 3333332222223456788888987643 12222
Q ss_pred hhhhcccccCCCCceEEEecCC
Q psy17126 118 SEDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~VvsNlP 139 (240)
... ...+ ++.|.+|.|--
T Consensus 84 ~~~-~~~~---g~id~lv~nAG 101 (286)
T PRK07791 84 DAA-VETF---GGLDVLVNNAG 101 (286)
T ss_pred HHH-HHhc---CCCCEEEECCC
Confidence 111 0111 35678887753
No 383
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=63.95 E-value=39 Score=28.57 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=38.6
Q ss_pred CCCEEEEECCchhHHHH----HHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 51 TGNEVCEVGPGPGSITR----SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~----~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
.+.+||=.|+++| ++. .|++++ .+|+.++.+....+.+.......+.++.++.+|+.+.+
T Consensus 10 ~~k~vlVtG~s~g-IG~~la~~l~~~G-~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 73 (255)
T PRK06113 10 DGKCAIITGAGAG-IGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQ 73 (255)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 4678999995544 444 444444 68988888776665544333333456888899987653
No 384
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=63.67 E-value=33 Score=29.15 Aligned_cols=82 Identities=15% Similarity=0.117 Sum_probs=45.6
Q ss_pred CCCEEEEECCchhHHHHHHH----hhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126 51 TGNEVCEVGPGPGSITRSIL----NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW 125 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La----~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~ 125 (240)
.++++|=.|++. .++..++ +.+ .+|++++.+.. +.+.+..+..+.++.++.+|+.+.+ ...++... ...|
T Consensus 7 ~~k~~lItGas~-gIG~aia~~l~~~G-~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~~~ 81 (251)
T PRK12481 7 NGKVAIITGCNT-GLGQGMAIGLAKAG-ADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQA-VEVM 81 (251)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCC-CEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHH-HHHc
Confidence 467889888654 4454444 443 68888876432 2232333333467888999997753 22222211 0111
Q ss_pred cCCCCceEEEecCCC
Q psy17126 126 SEGLPGIRIIGNLPF 140 (240)
Q Consensus 126 ~~~~~~~~VvsNlPY 140 (240)
++.|.+|.|--.
T Consensus 82 ---g~iD~lv~~ag~ 93 (251)
T PRK12481 82 ---GHIDILINNAGI 93 (251)
T ss_pred ---CCCCEEEECCCc
Confidence 356888887643
No 385
>PRK07035 short chain dehydrogenase; Provisional
Probab=63.25 E-value=40 Score=28.34 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=48.2
Q ss_pred CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+.+||=.|++.|. ++..|++.+ .+|++++.+..-++.+.+.....+.++.++..|+.+.. ...++... ...+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~- 83 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQG-AHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHI-RERH- 83 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH-HHHc-
Confidence 35678888877552 334555554 69999998876555444433333456788888887643 11121110 0111
Q ss_pred CCCCceEEEecCCC
Q psy17126 127 EGLPGIRIIGNLPF 140 (240)
Q Consensus 127 ~~~~~~~VvsNlPY 140 (240)
++.|.+|.|-.+
T Consensus 84 --~~id~li~~ag~ 95 (252)
T PRK07035 84 --GRLDILVNNAAA 95 (252)
T ss_pred --CCCCEEEECCCc
Confidence 246788876643
No 386
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=63.21 E-value=29 Score=30.94 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=43.3
Q ss_pred CCCCCCEEEEECCchhHHHHHHHhhC-----CCeEEEEeCCcchHHH-HHHHHhcCC-CCeEEEEcccc
Q psy17126 48 GTITGNEVCEVGPGPGSITRSILNRR-----PARLVLIEKDPRFTPC-LDMLAQASP-CPVHFHLGDVM 109 (240)
Q Consensus 48 ~~~~~~~VLEIG~GtG~lt~~La~~~-----~~~V~avEid~~m~~~-l~~~~~~~~-~~v~vi~~D~~ 109 (240)
.+..+.+.+|+|+|+-.=|+.|+... ..+.+.||+|...++. ++.....++ -.+.-+.+|..
T Consensus 75 ~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~ 143 (321)
T COG4301 75 SITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYE 143 (321)
T ss_pred HhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHH
Confidence 34457899999999999888877642 2689999999998765 344443332 23445667764
No 387
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=62.99 E-value=23 Score=31.81 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=32.0
Q ss_pred CCCCCCEEEEECCchhH-HHHHHHhh--CCCeEEEEeCCcchHHHHHH
Q psy17126 48 GTITGNEVCEVGPGPGS-ITRSILNR--RPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 48 ~~~~~~~VLEIG~GtG~-lt~~La~~--~~~~V~avEid~~m~~~l~~ 92 (240)
...++++||=+|||+=. ++..++++ ++.+|+++|.++.-++.++.
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 35679999999987533 44566654 34689999999877666653
No 388
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=62.89 E-value=8.4 Score=25.40 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.0
Q ss_pred EEEecCCCCCCHHHHHHHHHhccc
Q psy17126 133 RIIGNLPFNVSTPLIIKWIQAISE 156 (240)
Q Consensus 133 ~VvsNlPY~Iss~il~~ll~~~~~ 156 (240)
+.|+|||.+++...|.+++.+...
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~ 24 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGK 24 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTST
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhh
Confidence 369999999999999999998654
No 389
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=62.50 E-value=46 Score=27.76 Aligned_cols=83 Identities=11% Similarity=0.121 Sum_probs=48.2
Q ss_pred CCEEEEECCchhHHHHHHH----hhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 52 GNEVCEVGPGPGSITRSIL----NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La----~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
+.++|=.|++ |.++..++ +.+ .+|+.++.+......+.......+.++.++.+|+.+.+ +..++... ...+
T Consensus 3 ~~~ilItGas-~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~- 78 (250)
T TIGR03206 3 DKTAIVTGGG-GGIGGATCRRFAEEG-AKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAA-EQAL- 78 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH-HHHc-
Confidence 5677878853 45554444 443 58999998876655554443333467889999987643 11221110 0011
Q ss_pred CCCCceEEEecCCC
Q psy17126 127 EGLPGIRIIGNLPF 140 (240)
Q Consensus 127 ~~~~~~~VvsNlPY 140 (240)
++.|.||.|..+
T Consensus 79 --~~~d~vi~~ag~ 90 (250)
T TIGR03206 79 --GPVDVLVNNAGW 90 (250)
T ss_pred --CCCCEEEECCCC
Confidence 246788887754
No 390
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=62.45 E-value=30 Score=26.92 Aligned_cols=84 Identities=17% Similarity=0.168 Sum_probs=48.1
Q ss_pred EEEEECCchhH---HHHHHHhhCCCeEEEEeCC--cchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccC
Q psy17126 54 EVCEVGPGPGS---ITRSILNRRPARLVLIEKD--PRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSE 127 (240)
Q Consensus 54 ~VLEIG~GtG~---lt~~La~~~~~~V~avEid--~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~ 127 (240)
+||=.|+++|. ++..+++++...|+.+..+ ......+...+...+.++.++++|+.+.+ ...++.... ..+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-~~~-- 78 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI-KRF-- 78 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH-HHH--
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccc-ccc--
Confidence 46667766442 3455555544578888888 44444444434444578999999987643 222222111 111
Q ss_pred CCCceEEEecCCCC
Q psy17126 128 GLPGIRIIGNLPFN 141 (240)
Q Consensus 128 ~~~~~~VvsNlPY~ 141 (240)
++.|.+|.|-...
T Consensus 79 -~~ld~li~~ag~~ 91 (167)
T PF00106_consen 79 -GPLDILINNAGIF 91 (167)
T ss_dssp -SSESEEEEECSCT
T ss_pred -ccccccccccccc
Confidence 4578888886543
No 391
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=62.41 E-value=47 Score=28.30 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=50.5
Q ss_pred CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+.++|=.|++.| .++..|++++ .+|+.++.+++-++.+.......+.++.++.+|+.+.. +...+... ...|
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G-~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~~~- 85 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAG-ATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQI-EKEV- 85 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH-HHhC-
Confidence 4567888887653 2345566654 68999988876655554444333457888999997643 12222111 0112
Q ss_pred CCCCceEEEecCCC
Q psy17126 127 EGLPGIRIIGNLPF 140 (240)
Q Consensus 127 ~~~~~~~VvsNlPY 140 (240)
++.|.+|.|--+
T Consensus 86 --~~id~li~~ag~ 97 (265)
T PRK07097 86 --GVIDILVNNAGI 97 (265)
T ss_pred --CCCCEEEECCCC
Confidence 356888887654
No 392
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=61.77 E-value=16 Score=32.41 Aligned_cols=39 Identities=23% Similarity=0.123 Sum_probs=34.2
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHHHHhh
Q psy17126 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEE 204 (240)
Q Consensus 166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~~~~~ 204 (240)
..++++|-.+||+|..++.+||.+++..|.+++.+.+..
T Consensus 174 iya~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~~~~vl~~ 212 (274)
T PRK01103 174 IYADEALFRAGIHPERPAGSLSRAEAERLVDAIKAVLAE 212 (274)
T ss_pred hHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999988774443
No 393
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=61.70 E-value=33 Score=28.72 Aligned_cols=58 Identities=16% Similarity=0.078 Sum_probs=37.3
Q ss_pred EEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 54 EVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 54 ~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
+||=.| |+|.++..+++.. ..+|++++.++.-.+.+.......+.++.++.+|+.+.+
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 63 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKED 63 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 456566 5566666665432 358999999876655554433333457889999998743
No 394
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=61.30 E-value=16 Score=32.47 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=34.2
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHHHHhh
Q psy17126 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEE 204 (240)
Q Consensus 166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~~~~~ 204 (240)
-.++++|-.+||+|.+++.+||.+++.+|.+++.+.+..
T Consensus 183 iya~EiLf~A~IhP~~~~~~Ls~~~~~~L~~~i~~vl~~ 221 (282)
T PRK13945 183 IYADESLFKAGIHPTTPAGQLKKKQLERLREAIIEVLKT 221 (282)
T ss_pred hHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999988775544
No 395
>PLN02253 xanthoxin dehydrogenase
Probab=61.26 E-value=32 Score=29.54 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=37.1
Q ss_pred CCCEEEEECCchhHHHHHHH----hhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSIL----NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La----~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
.+.++|=.|+ +|.++..++ +++ .+|+.++.++...+.+.+... ...++.++.+|+.+.
T Consensus 17 ~~k~~lItGa-s~gIG~~la~~l~~~G-~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~ 78 (280)
T PLN02253 17 LGKVALVTGG-ATGIGESIVRLFHKHG-AKVCIVDLQDDLGQNVCDSLG-GEPNVCFFHCDVTVE 78 (280)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhc-CCCceEEEEeecCCH
Confidence 3567887884 455555544 443 699999988765554433222 124688999999764
No 396
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=61.13 E-value=17 Score=32.16 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=32.7
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy17126 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMC 202 (240)
Q Consensus 166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~~~ 202 (240)
..++++|-.+||+|..++.+||.+++.+|..++.+.+
T Consensus 173 iya~EiLf~a~i~P~~~~~~l~~~~~~~l~~a~~~vl 209 (272)
T PRK14810 173 IYADEALFRAGIRPQRLASSLSRERLRKLHDAIGEVL 209 (272)
T ss_pred hHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999776533
No 397
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=60.93 E-value=38 Score=28.91 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=35.2
Q ss_pred HHcCCCCCCEEEEECCch-hHHHHHHHhhCCCe-EEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPAR-LVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~~-V~avEid~~m~~~l~~ 92 (240)
....+.++++||=.|+|. |..+..+++....+ |++++.+++..+.+++
T Consensus 91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA 140 (277)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH
Confidence 345667889999998876 66777777764456 9999988877765554
No 398
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=60.76 E-value=27 Score=29.93 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=43.4
Q ss_pred CCCEEEEECCchhHHHHHHHhh----C-CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNR----R-PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTM 113 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~----~-~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~ 113 (240)
..+.|+|+|.-.|.-+...|.. + +.+|+++|+|-.-...+.. + .+++.+++|+-.+...
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~---e-~p~i~f~egss~dpai 132 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR---E-VPDILFIEGSSTDPAI 132 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh---c-CCCeEEEeCCCCCHHH
Confidence 3478999999999888777764 2 3689999999776544322 1 3789999999876543
No 399
>PRK07062 short chain dehydrogenase; Provisional
Probab=60.69 E-value=44 Score=28.37 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=47.0
Q ss_pred CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-CC-CCeEEEEccccccc-ccccchhhhccc
Q psy17126 51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-SP-CPVHFHLGDVMSFT-MQNMFSEDRRRD 124 (240)
Q Consensus 51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-~~-~~v~vi~~D~~~~~-~~~~~~~~~~~~ 124 (240)
.+.++|=.|++.| .++..+++.+ .+|+++..++.-++.+.+.... .+ .++.++.+|+.+.+ +..++... ...
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~-~~~ 84 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAG-ASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAV-EAR 84 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHH-HHh
Confidence 4678888886543 2334444444 6899999987655544333222 22 36778888987743 11211111 011
Q ss_pred ccCCCCceEEEecCC
Q psy17126 125 WSEGLPGIRIIGNLP 139 (240)
Q Consensus 125 ~~~~~~~~~VvsNlP 139 (240)
| +..|.+|.|--
T Consensus 85 ~---g~id~li~~Ag 96 (265)
T PRK07062 85 F---GGVDMLVNNAG 96 (265)
T ss_pred c---CCCCEEEECCC
Confidence 2 35688888764
No 400
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=59.92 E-value=57 Score=27.23 Aligned_cols=83 Identities=11% Similarity=0.074 Sum_probs=46.1
Q ss_pred CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+++||=.|++.|. ++..|++.+ .+|++++.+. ...+.+.....+.++.++.+|+.+.+ +...+... ...|
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G-~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~- 78 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAG-ADIVGAGRSE--PSETQQQVEALGRRFLSLTADLSDIEAIKALVDSA-VEEF- 78 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCch--HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH-HHHc-
Confidence 46788888885441 234444443 6899998654 22233333333457889999998743 12222110 0111
Q ss_pred CCCCceEEEecCCC
Q psy17126 127 EGLPGIRIIGNLPF 140 (240)
Q Consensus 127 ~~~~~~~VvsNlPY 140 (240)
+..|.+|.|.-+
T Consensus 79 --~~~d~li~~ag~ 90 (248)
T TIGR01832 79 --GHIDILVNNAGI 90 (248)
T ss_pred --CCCCEEEECCCC
Confidence 356888887644
No 401
>PRK09072 short chain dehydrogenase; Provisional
Probab=59.48 E-value=49 Score=28.08 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=48.6
Q ss_pred CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
++.+||=.|++.|. ++..+++++ .+|++++.++.-++.+.... ..+.++.++.+|+.+.. +..++... ..|
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~--~~~- 78 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAG-ARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARA--REM- 78 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHH--Hhc-
Confidence 35678878866432 344555554 68999999877665554433 22457889999987643 12222111 012
Q ss_pred CCCCceEEEecCCC
Q psy17126 127 EGLPGIRIIGNLPF 140 (240)
Q Consensus 127 ~~~~~~~VvsNlPY 140 (240)
+..|.||.|--+
T Consensus 79 --~~id~lv~~ag~ 90 (263)
T PRK09072 79 --GGINVLINNAGV 90 (263)
T ss_pred --CCCCEEEECCCC
Confidence 346788877544
No 402
>KOG3350|consensus
Probab=59.42 E-value=35 Score=28.84 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=55.1
Q ss_pred cCccccCCHHHHHHHHHHc--CCCCCCEEEEECCchhHHHHHHHhh--CCCeEEEEeCCcchHHHHHHHHhcCCCCeEEE
Q psy17126 29 LSQNFLFEPRLTDKIVRNA--GTITGNEVCEVGPGPGSITRSILNR--RPARLVLIEKDPRFTPCLDMLAQASPCPVHFH 104 (240)
Q Consensus 29 ~gQ~fl~d~~i~~~iv~~~--~~~~~~~VLEIG~GtG~lt~~La~~--~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi 104 (240)
+.| |.-++.++.+++... ....+.+|.=|.|-|=.+-...-.. +..+|+-+|.|.++-... -+|+
T Consensus 50 lsq-fwy~~eta~~La~e~v~~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRFe~yg----------~eFv 118 (217)
T KOG3350|consen 50 LSQ-FWYSDETARKLAAERVEASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRFELYG----------TEFV 118 (217)
T ss_pred hhh-hhcCHHHHHHHHHHHHhhcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhHHhcc----------ceeE
Confidence 556 556666666665542 2345677888888775533332221 236899999998874332 2466
Q ss_pred Ecccccc-cccccchhhhcccccCCCCceEEEecCCC
Q psy17126 105 LGDVMSF-TMQNMFSEDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 105 ~~D~~~~-~~~~~~~~~~~~~~~~~~~~~~VvsNlPY 140 (240)
+-|.-.. ++++... ..+|+||+.|||
T Consensus 119 fYDyN~p~dlp~~lk----------~~fdiivaDPPf 145 (217)
T KOG3350|consen 119 FYDYNCPLDLPDELK----------AHFDIIVADPPF 145 (217)
T ss_pred EeccCCCCCCHHHHH----------hcccEEEeCCcc
Confidence 6666542 2333222 358999999998
No 403
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=59.40 E-value=49 Score=29.14 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=37.3
Q ss_pred CCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhc--CCCCeEEEEccccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQA--SPCPVHFHLGDVMSFT 112 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~--~~~~v~vi~~D~~~~~ 112 (240)
.+.+||=.| |+|.++..++++. ..+|+++..++............ ...+++++.+|+.+.+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~ 69 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEG 69 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCch
Confidence 467888888 5677666665532 35888887776543333222111 1246899999998754
No 404
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=59.11 E-value=53 Score=27.73 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=45.5
Q ss_pred CCCEEEEECCchh--H-HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPG--S-ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG--~-lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+.++|=.|++.| . ++..|++++ .+|+.++.++...+... .....+.++.++.+|+.+.+ ...++... ...+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G-~~v~~~~r~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~- 82 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEG-ARVVLVDRSELVHEVAA-ELRAAGGEALALTADLETYAGAQAAMAAA-VEAF- 82 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCchHHHHHHH-HHHhcCCeEEEEEEeCCCHHHHHHHHHHH-HHHc-
Confidence 3567888886543 2 344455554 68999998864332222 22223456888899987643 11222111 0011
Q ss_pred CCCCceEEEecCC
Q psy17126 127 EGLPGIRIIGNLP 139 (240)
Q Consensus 127 ~~~~~~~VvsNlP 139 (240)
+..|.+|.|--
T Consensus 83 --~~id~lv~nAg 93 (260)
T PRK12823 83 --GRIDVLINNVG 93 (260)
T ss_pred --CCCeEEEECCc
Confidence 35688888763
No 405
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=59.04 E-value=20 Score=31.73 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=32.4
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy17126 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMC 202 (240)
Q Consensus 166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~~~ 202 (240)
-.++++|-.+||+|..++.+||-+|+.+|.+++.+.+
T Consensus 162 iyadEiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~~vl 198 (269)
T PRK14811 162 IYADESLWRARIHPARPATSLKAPEARRLYRAIREVM 198 (269)
T ss_pred HHHHHHHHHcCCCccCCcccCCHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999988776533
No 406
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=58.98 E-value=45 Score=29.84 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=33.7
Q ss_pred HHcCCCCCCEEEEECCc-hhHHHHHHHhhCC-CeEEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGPG-PGSITRSILNRRP-ARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~G-tG~lt~~La~~~~-~~V~avEid~~m~~~l~~ 92 (240)
......++++||=+|+| .|.++..+++... .+|++++.+++-.+.+++
T Consensus 163 ~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 163 HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 34455678899988875 3455566666533 479999999888777764
No 407
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.93 E-value=52 Score=27.37 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=47.4
Q ss_pred CCEEEEECCc--hhH-HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccC
Q psy17126 52 GNEVCEVGPG--PGS-ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSE 127 (240)
Q Consensus 52 ~~~VLEIG~G--tG~-lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~ 127 (240)
+.+||=+|++ .|. ++..|++++ .+|++++.++.-.+.+...... +.++.++.+|+.+.+ +...+... +..
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~----~~~ 78 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEG-ARVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAA----LER 78 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHH----HHH
Confidence 4577777764 333 334455554 6899999998655554433322 356889999987643 11221110 011
Q ss_pred CCCceEEEecCCC
Q psy17126 128 GLPGIRIIGNLPF 140 (240)
Q Consensus 128 ~~~~~~VvsNlPY 140 (240)
.+..|.||.|..+
T Consensus 79 ~~~~d~vi~~ag~ 91 (251)
T PRK07231 79 FGSVDILVNNAGT 91 (251)
T ss_pred hCCCCEEEECCCC
Confidence 1356888888754
No 408
>PRK09242 tropinone reductase; Provisional
Probab=58.88 E-value=65 Score=27.15 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=48.9
Q ss_pred CCCEEEEECCchh--H-HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEccccccc-ccccchhhhccc
Q psy17126 51 TGNEVCEVGPGPG--S-ITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSFT-MQNMFSEDRRRD 124 (240)
Q Consensus 51 ~~~~VLEIG~GtG--~-lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~~-~~~~~~~~~~~~ 124 (240)
.++++|=.|++.| . ++..+++.+ .+|+.++.+.+-++.+....... +.++.++.+|+.+.+ +..++... ...
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~~ 85 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLG-ADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWV-EDH 85 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH-HHH
Confidence 4678888887443 2 233444444 68999998876665554433222 356888899987643 11222110 011
Q ss_pred ccCCCCceEEEecCCCC
Q psy17126 125 WSEGLPGIRIIGNLPFN 141 (240)
Q Consensus 125 ~~~~~~~~~VvsNlPY~ 141 (240)
+ ++.|.||.|--+.
T Consensus 86 ~---g~id~li~~ag~~ 99 (257)
T PRK09242 86 W---DGLHILVNNAGGN 99 (257)
T ss_pred c---CCCCEEEECCCCC
Confidence 1 3568888877553
No 409
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=58.59 E-value=37 Score=30.78 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=34.4
Q ss_pred HHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~ 92 (240)
....++++++||=.|+|. |.++..+++.... +|++++.++.-.+.+++
T Consensus 185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 445677888988898764 5556666665434 79999999887777654
No 410
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=58.47 E-value=35 Score=30.73 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=34.4
Q ss_pred HHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~ 92 (240)
....+.++++||=.|+|. |.++..+++.... +|++++.++.-.+.+++
T Consensus 170 ~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 170 NTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 344567899999998754 5566667775434 59999998887777653
No 411
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=57.98 E-value=51 Score=26.99 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=22.3
Q ss_pred EEEEECCc-hhHHH-HHHHhhCCCeEEEEeCCc
Q psy17126 54 EVCEVGPG-PGSIT-RSILNRRPARLVLIEKDP 84 (240)
Q Consensus 54 ~VLEIG~G-tG~lt-~~La~~~~~~V~avEid~ 84 (240)
+|+=|||| .|+.. ..|+..+.++++-+|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 47789998 46644 555555667899999886
No 412
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=57.97 E-value=43 Score=30.67 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=24.3
Q ss_pred CCCEEEEECCc-hhHH-HHHHHhhCCCeEEEEeCCc
Q psy17126 51 TGNEVCEVGPG-PGSI-TRSILNRRPARLVLIEKDP 84 (240)
Q Consensus 51 ~~~~VLEIG~G-tG~l-t~~La~~~~~~V~avEid~ 84 (240)
...+|+=|||| .|+. +..|+..+.++++.||-|.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35689999998 3444 3455555557999999885
No 413
>PLN02740 Alcohol dehydrogenase-like
Probab=56.89 E-value=39 Score=30.86 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=33.8
Q ss_pred HHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~ 92 (240)
....+.++++||=+|+|+ |.++..+++.... +|++++.+++-.+.+++
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 345677899999998763 4444556665434 69999999887777754
No 414
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=56.58 E-value=1e+02 Score=27.45 Aligned_cols=78 Identities=22% Similarity=0.222 Sum_probs=58.6
Q ss_pred EEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceEEE
Q psy17126 56 CEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII 135 (240)
Q Consensus 56 LEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~Vv 135 (240)
|..=||+--+++.+++. ..++.+.|+-+.=...+++++.. +.++++..+|-...- ....+. +++--.|+
T Consensus 93 l~~YpGSP~lA~~llR~-qDRl~l~ELHp~D~~~L~~~f~~-d~~vrv~~~DG~~~l-~a~LPP--------~erRglVL 161 (279)
T COG2961 93 LRYYPGSPLLARQLLRE-QDRLVLTELHPSDAPLLRNNFAG-DRRVRVLRGDGFLAL-KAHLPP--------KERRGLVL 161 (279)
T ss_pred cccCCCCHHHHHHHcch-hceeeeeecCccHHHHHHHHhCC-CcceEEEecCcHHHH-hhhCCC--------CCcceEEE
Confidence 88999999999999886 47999999999999999987753 478999999964321 111111 12345788
Q ss_pred ecCCCCCCH
Q psy17126 136 GNLPFNVST 144 (240)
Q Consensus 136 sNlPY~Iss 144 (240)
-.|||-...
T Consensus 162 IDPPfE~~~ 170 (279)
T COG2961 162 IDPPFELKD 170 (279)
T ss_pred eCCCccccc
Confidence 899997765
No 415
>PRK06139 short chain dehydrogenase; Provisional
Probab=56.54 E-value=55 Score=29.53 Aligned_cols=85 Identities=21% Similarity=0.171 Sum_probs=49.2
Q ss_pred CCCEEEEECCch--hHH-HHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGP--GSI-TRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~Gt--G~l-t~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+.+||=.|++. |.- +..+++++ .+|+.+..++.-++.+.+.+...+.++.++..|+.+.+ +..++... ..
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G-~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~----~~ 80 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRG-ARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQA----AS 80 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHH----HH
Confidence 456788888743 322 23444454 68999999887666555544444567888888987643 11221110 00
Q ss_pred CCCCceEEEecCCC
Q psy17126 127 EGLPGIRIIGNLPF 140 (240)
Q Consensus 127 ~~~~~~~VvsNlPY 140 (240)
..++.|.+|.|--+
T Consensus 81 ~~g~iD~lVnnAG~ 94 (330)
T PRK06139 81 FGGRIDVWVNNVGV 94 (330)
T ss_pred hcCCCCEEEECCCc
Confidence 11356888888643
No 416
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=56.49 E-value=56 Score=28.65 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=36.3
Q ss_pred HcCCCCCCEEEEECCc-hhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 46 NAGTITGNEVCEVGPG-PGSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 46 ~~~~~~~~~VLEIG~G-tG~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
...+.++.+||-.|+| .|..+..+++....+|+++..+++..+.+++
T Consensus 157 ~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 157 DAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK 204 (330)
T ss_pred hhCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3566778899999987 7777777777655689999999888777643
No 417
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=56.45 E-value=42 Score=28.15 Aligned_cols=62 Identities=13% Similarity=0.054 Sum_probs=39.4
Q ss_pred CCCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCC-CCeEEEEccccccc
Q psy17126 50 ITGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLGDVMSFT 112 (240)
Q Consensus 50 ~~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~-~~v~vi~~D~~~~~ 112 (240)
.++.+||=.|+ +|.++..+++.. ..+|++++.++.-.+.+.+.+.... .++.++.+|+...+
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~ 75 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTAT 75 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCC
Confidence 36778998884 566665554431 3599999998765554443333222 46788888886443
No 418
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=56.34 E-value=52 Score=32.58 Aligned_cols=81 Identities=9% Similarity=-0.041 Sum_probs=47.2
Q ss_pred cCCCCCCEEEEECCchhHHHHHHH----hhCCCeEEEEeCCcchHHHHHHHHhc-----C----CCCeEEEEcccccccc
Q psy17126 47 AGTITGNEVCEVGPGPGSITRSIL----NRRPARLVLIEKDPRFTPCLDMLAQA-----S----PCPVHFHLGDVMSFTM 113 (240)
Q Consensus 47 ~~~~~~~~VLEIG~GtG~lt~~La----~~~~~~V~avEid~~m~~~l~~~~~~-----~----~~~v~vi~~D~~~~~~ 113 (240)
.+...+.+||=.|++ |.++..++ +. +.+|+++..+..-+..+...+.. . ..++.++.+|+.+.+
T Consensus 75 ~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~-G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e- 151 (576)
T PLN03209 75 LDTKDEDLAFVAGAT-GKVGSRTVRELLKL-GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD- 151 (576)
T ss_pred cccCCCCEEEEECCC-CHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH-
Confidence 344567888888873 54555444 34 36899998887655443322111 0 135889999998743
Q ss_pred cccchhhhcccccCCCCceEEEecCC
Q psy17126 114 QNMFSEDRRRDWSEGLPGIRIIGNLP 139 (240)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~VvsNlP 139 (240)
.+... + +..|+||.|.-
T Consensus 152 -sI~~a-----L---ggiDiVVn~AG 168 (576)
T PLN03209 152 -QIGPA-----L---GNASVVICCIG 168 (576)
T ss_pred -HHHHH-----h---cCCCEEEEccc
Confidence 21111 1 24577887764
No 419
>KOG1201|consensus
Probab=56.31 E-value=66 Score=29.16 Aligned_cols=96 Identities=18% Similarity=0.098 Sum_probs=60.0
Q ss_pred CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.|..||==|.|.|- ++..+|+++ ++++..|++..-.+...+..+.. ++++...+|+.+.+ +....... ..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg-~~~vl~Din~~~~~etv~~~~~~-g~~~~y~cdis~~eei~~~a~~V-k~--- 110 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG-AKLVLWDINKQGNEETVKEIRKI-GEAKAYTCDISDREEIYRLAKKV-KK--- 110 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC-CeEEEEeccccchHHHHHHHHhc-CceeEEEecCCCHHHHHHHHHHH-HH---
Confidence 57888888888773 556777776 58999999988777665554433 47889999998754 11111110 00
Q ss_pred CCCCceEEEecC-------CCCCCHHHHHHHHH
Q psy17126 127 EGLPGIRIIGNL-------PFNVSTPLIIKWIQ 152 (240)
Q Consensus 127 ~~~~~~~VvsNl-------PY~Iss~il~~ll~ 152 (240)
+-+..+++|-|- =++++...+.+.++
T Consensus 111 e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~ 143 (300)
T KOG1201|consen 111 EVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFD 143 (300)
T ss_pred hcCCceEEEeccccccCCCccCCCHHHHHHHHH
Confidence 114566766653 25566666666443
No 420
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=56.05 E-value=56 Score=27.72 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=44.0
Q ss_pred EEEEECCchhHHHH----HHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccCC
Q psy17126 54 EVCEVGPGPGSITR----SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSEG 128 (240)
Q Consensus 54 ~VLEIG~GtG~lt~----~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~~ 128 (240)
+||=.|++ |.++. .+++++ .+|+.++.++.-++.+.+.+... +++.++.+|+.+.+ ...++... +...
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~Dv~d~~~~~~~~~~~----~~~~ 74 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKG-ARVVISSRNEENLEKALKELKEY-GEVYAVKADLSDKDDLKNLVKEA----WELL 74 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhc-CCceEEEcCCCCHHHHHHHHHHH----HHhc
Confidence 46666755 33444 444454 68999998876655554433322 46788899987643 12222111 0111
Q ss_pred CCceEEEecCC
Q psy17126 129 LPGIRIIGNLP 139 (240)
Q Consensus 129 ~~~~~VvsNlP 139 (240)
++.|.+|.|.-
T Consensus 75 g~id~li~naG 85 (259)
T PRK08340 75 GGIDALVWNAG 85 (259)
T ss_pred CCCCEEEECCC
Confidence 35688887753
No 421
>PRK13699 putative methylase; Provisional
Probab=55.92 E-value=6.6 Score=33.83 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=22.4
Q ss_pred eEEEEcccccccccccchhhhcccccCCCCceEEEecCCCCCC
Q psy17126 101 VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVS 143 (240)
Q Consensus 101 v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNlPY~Is 143 (240)
.+++++|.+++ +..+ + ..+.|.||..|||+++
T Consensus 2 ~~l~~gD~le~-l~~l-p---------d~SVDLIiTDPPY~i~ 33 (227)
T PRK13699 2 SRFILGNCIDV-MARF-P---------DNAVDFILTDPPYLVG 33 (227)
T ss_pred CeEEechHHHH-HHhC-C---------ccccceEEeCCCcccc
Confidence 36889999875 2222 1 1468999999999873
No 422
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=55.81 E-value=46 Score=28.83 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=32.4
Q ss_pred HHcCCCCCCEEEEECCc-hhHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGPG-PGSITRSILNRRPA-RLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~G-tG~lt~~La~~~~~-~V~avEid~~m~~~l~~ 92 (240)
......++++||=+|+| .|.++..+++.... +|++++.++.-.+.+++
T Consensus 114 ~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 114 EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred HhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 34455688999999875 34455666665333 59999988776666654
No 423
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=55.63 E-value=15 Score=32.21 Aligned_cols=80 Identities=19% Similarity=0.202 Sum_probs=45.8
Q ss_pred EEECCchhHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceEEE
Q psy17126 56 CEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRII 135 (240)
Q Consensus 56 LEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~Vv 135 (240)
+..=||+-.++..+++. ..+.+.+|+.+.-.+.+++++.. ..++++++.|..+- +..+.+. ..+--.|+
T Consensus 62 l~~YPGSP~ia~~llR~-qDrl~l~ELHp~d~~~L~~~~~~-~~~v~v~~~DG~~~-l~allPP--------~~rRglVL 130 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE-QDRLVLFELHPQDFEALKKNFRR-DRRVRVHHRDGYEG-LKALLPP--------PERRGLVL 130 (245)
T ss_dssp --EEE-HHHHHHHHS-T-TSEEEEE--SHHHHHHHTTS--T-TS-EEEE-S-HHHH-HHHH-S---------TTS-EEEE
T ss_pred cCcCCCCHHHHHHhCCc-cceEEEEecCchHHHHHHHHhcc-CCccEEEeCchhhh-hhhhCCC--------CCCCeEEE
Confidence 78899999999999887 47999999999999999877653 36899999998653 1222221 12345788
Q ss_pred ecCCCCCCHHH
Q psy17126 136 GNLPFNVSTPL 146 (240)
Q Consensus 136 sNlPY~Iss~i 146 (240)
-.|||-..+.-
T Consensus 131 IDPpYE~~~dy 141 (245)
T PF04378_consen 131 IDPPYEQKDDY 141 (245)
T ss_dssp E-----STTHH
T ss_pred ECCCCCCchHH
Confidence 89999887743
No 424
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=55.29 E-value=47 Score=29.99 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=36.5
Q ss_pred HcCCCCCCEEEEECC--chhHHHHHHHhhCCCeEEEEeCCcchHHHHH
Q psy17126 46 NAGTITGNEVCEVGP--GPGSITRSILNRRPARLVLIEKDPRFTPCLD 91 (240)
Q Consensus 46 ~~~~~~~~~VLEIG~--GtG~lt~~La~~~~~~V~avEid~~m~~~l~ 91 (240)
...+.++++||=.|+ |.|.++..+++....+|++++.+++-.+.++
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 356778999999997 5788888888875568999998887766665
No 425
>PRK12743 oxidoreductase; Provisional
Probab=55.22 E-value=54 Score=27.77 Aligned_cols=84 Identities=5% Similarity=-0.134 Sum_probs=45.5
Q ss_pred CCEEEEECCchhHHHHHHHhhC---CCeEEEEeC-CcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 52 GNEVCEVGPGPGSITRSILNRR---PARLVLIEK-DPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~---~~~V~avEi-d~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
+.+||=.|+ +|.++..++++. +.+|+.+.. +..-.+.+.+.....+.++.++.+|+.+.. +...+.+. ...|
T Consensus 2 ~k~vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~~~- 78 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKL-IQRL- 78 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH-HHHc-
Confidence 356788886 455666665532 357877653 444444443333334567899999987743 11212111 1112
Q ss_pred CCCCceEEEecCCC
Q psy17126 127 EGLPGIRIIGNLPF 140 (240)
Q Consensus 127 ~~~~~~~VvsNlPY 140 (240)
++.|.||.|--+
T Consensus 79 --~~id~li~~ag~ 90 (256)
T PRK12743 79 --GRIDVLVNNAGA 90 (256)
T ss_pred --CCCCEEEECCCC
Confidence 346788877543
No 426
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.13 E-value=48 Score=28.35 Aligned_cols=84 Identities=19% Similarity=0.114 Sum_probs=45.3
Q ss_pred CCCEEEEECCch-hHHHHHHH----hhCCCeEEEEeCCcchHHHHHHHHhcC-CCCeEEEEccccccc-ccccchhhhcc
Q psy17126 51 TGNEVCEVGPGP-GSITRSIL----NRRPARLVLIEKDPRFTPCLDMLAQAS-PCPVHFHLGDVMSFT-MQNMFSEDRRR 123 (240)
Q Consensus 51 ~~~~VLEIG~Gt-G~lt~~La----~~~~~~V~avEid~~m~~~l~~~~~~~-~~~v~vi~~D~~~~~-~~~~~~~~~~~ 123 (240)
.++++|=.|.++ +.++..++ +.+ .+|+.+..+.+..+.+++..+.. +.++.++..|+.+.+ ...++... ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~~ 83 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAG-AKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETI-KE 83 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHH-HH
Confidence 467899999762 44544444 443 68888865433223333322222 356888899987643 12222211 11
Q ss_pred cccCCCCceEEEecCC
Q psy17126 124 DWSEGLPGIRIIGNLP 139 (240)
Q Consensus 124 ~~~~~~~~~~VvsNlP 139 (240)
.| ++.|.+|.|.-
T Consensus 84 ~~---g~ld~lv~nag 96 (257)
T PRK08594 84 EV---GVIHGVAHCIA 96 (257)
T ss_pred hC---CCccEEEECcc
Confidence 12 45688887753
No 427
>PRK07102 short chain dehydrogenase; Provisional
Probab=55.09 E-value=45 Score=27.86 Aligned_cols=58 Identities=22% Similarity=0.220 Sum_probs=35.5
Q ss_pred CEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHH-hcCCCCeEEEEcccccc
Q psy17126 53 NEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLA-QASPCPVHFHLGDVMSF 111 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~-~~~~~~v~vi~~D~~~~ 111 (240)
.+|+=.|+ +|.++..++++. ..+|++++.++.-.+...+.. .....++.++.+|+.+.
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 63 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDT 63 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCCh
Confidence 35777774 455555544431 368999998876544332222 22235789999999874
No 428
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=55.09 E-value=1.2e+02 Score=28.73 Aligned_cols=85 Identities=18% Similarity=0.106 Sum_probs=48.2
Q ss_pred CCCEEEEECCchhH-----HHHHHHhhCCCeEEEEeCCcchH------------HHHHHHHhcCCCCeEEEEcccccccc
Q psy17126 51 TGNEVCEVGPGPGS-----ITRSILNRRPARLVLIEKDPRFT------------PCLDMLAQASPCPVHFHLGDVMSFTM 113 (240)
Q Consensus 51 ~~~~VLEIG~GtG~-----lt~~La~~~~~~V~avEid~~m~------------~~l~~~~~~~~~~v~vi~~D~~~~~~ 113 (240)
.++++|=+|+.+|. .+..+ ..+ ..|+++..+..-. +.+.+.++..+..+..+++|+.+-+-
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~G-A~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAG-ADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcC-CeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 45799999997765 23344 443 6788887543211 11222233334456788999987432
Q ss_pred -cccchhhhcccccCCCCceEEEecCCCC
Q psy17126 114 -QNMFSEDRRRDWSEGLPGIRIIGNLPFN 141 (240)
Q Consensus 114 -~~~~~~~~~~~~~~~~~~~~VvsNlPY~ 141 (240)
..++.. ....| +..|.+|.|+-|.
T Consensus 118 v~~lie~-I~e~~---G~IDiLVnSaA~~ 142 (398)
T PRK13656 118 KQKVIEL-IKQDL---GQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHH-HHHhc---CCCCEEEECCccC
Confidence 222222 11223 4678899888765
No 429
>PRK06114 short chain dehydrogenase; Provisional
Probab=54.67 E-value=69 Score=27.04 Aligned_cols=85 Identities=12% Similarity=-0.006 Sum_probs=46.6
Q ss_pred CCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcc-hHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPR-FTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW 125 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~-m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~ 125 (240)
.+.++|=.|. +|.++..+++.. ..+|+.++.+.. .++.+.+.....+.++.++.+|+.+.+ +...+... ...|
T Consensus 7 ~~k~~lVtG~-s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~-~~~~ 84 (254)
T PRK06114 7 DGQVAFVTGA-GSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVART-EAEL 84 (254)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH-HHHc
Confidence 4567887774 455665555431 368999987643 233333323333456888899987643 11211110 0111
Q ss_pred cCCCCceEEEecCCC
Q psy17126 126 SEGLPGIRIIGNLPF 140 (240)
Q Consensus 126 ~~~~~~~~VvsNlPY 140 (240)
++.|.+|.|--+
T Consensus 85 ---g~id~li~~ag~ 96 (254)
T PRK06114 85 ---GALTLAVNAAGI 96 (254)
T ss_pred ---CCCCEEEECCCC
Confidence 356888888754
No 430
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=54.51 E-value=56 Score=28.81 Aligned_cols=48 Identities=29% Similarity=0.437 Sum_probs=36.4
Q ss_pred HHcCCCCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
....+.++++||-.|+|. |..+..+++....+|+++..+++..+.+++
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~ 201 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE 201 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH
Confidence 345567888999998874 777788887655789999888887776653
No 431
>PRK07774 short chain dehydrogenase; Provisional
Probab=54.44 E-value=63 Score=26.96 Aligned_cols=84 Identities=12% Similarity=0.022 Sum_probs=47.4
Q ss_pred CCCEEEEECCchhHHHHHHHh----hCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILN----RRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW 125 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~----~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~ 125 (240)
.+.++|=.| |+|.++..+++ ++ .+|+.++.++.-...+.........++.++.+|+.+.. +..++... ...+
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~~~ 81 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREG-ASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADAT-VSAF 81 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHH-HHHh
Confidence 456788788 45555555554 43 69999998865544443333222346778889987643 11111110 0011
Q ss_pred cCCCCceEEEecCCC
Q psy17126 126 SEGLPGIRIIGNLPF 140 (240)
Q Consensus 126 ~~~~~~~~VvsNlPY 140 (240)
+..|.||.|-.+
T Consensus 82 ---~~id~vi~~ag~ 93 (250)
T PRK07774 82 ---GGIDYLVNNAAI 93 (250)
T ss_pred ---CCCCEEEECCCC
Confidence 346888887764
No 432
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=54.42 E-value=33 Score=28.02 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeC
Q psy17126 37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEK 82 (240)
Q Consensus 37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEi 82 (240)
+..+++.+..+.-.+ .-|||+|=|.|..--.|-+..+ .+|+++|-
T Consensus 15 R~~L~~a~~~v~~~~-G~VlElGLGNGRTydHLRe~~p~R~I~vfDR 60 (160)
T PF12692_consen 15 RDCLNWAAAQVAGLP-GPVLELGLGNGRTYDHLREIFPDRRIYVFDR 60 (160)
T ss_dssp HHHHHHHHHHTTT---S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred HHHHHHHHHHhcCCC-CceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence 445566666665445 4699999999999888888753 78999995
No 433
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=54.12 E-value=63 Score=27.00 Aligned_cols=60 Identities=15% Similarity=0.023 Sum_probs=39.5
Q ss_pred CCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 52 GNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
+.+||=.|. +|.++..+++.. ..+|++++.++.-.+.+.......+.++.++.+|+.+..
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 66 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEE 66 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHH
Confidence 456776665 566666666542 368999998877665554433333467889999987643
No 434
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=54.09 E-value=43 Score=31.04 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=40.1
Q ss_pred HHHHHHcCCCCCCEEEEECCchhHHHHHHHhh--CCCeEEEEeCCcchHHHHHH
Q psy17126 41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNR--RPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 41 ~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~--~~~~V~avEid~~m~~~l~~ 92 (240)
-..+..+.+.+|++|.=+|||.=.|+.-...+ ++.+++|||+++.-++.+++
T Consensus 175 Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 175 GAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred HHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 34566778889999999999976665433332 45899999999999988875
No 435
>KOG2782|consensus
Probab=53.92 E-value=11 Score=32.89 Aligned_cols=57 Identities=19% Similarity=0.359 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCC-CeEEEEeCCcchHHHHHHH
Q psy17126 37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDML 93 (240)
Q Consensus 37 ~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~-~~V~avEid~~m~~~l~~~ 93 (240)
|-+++..++.+.+.++...+|.--|.|.-|..++++.+ .+++|+|.||-....++..
T Consensus 29 PVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~ 86 (303)
T KOG2782|consen 29 PVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFH 86 (303)
T ss_pred ceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHh
Confidence 45678888889889999999999999999999998753 6899999998766655543
No 436
>PRK07814 short chain dehydrogenase; Provisional
Probab=53.72 E-value=73 Score=27.09 Aligned_cols=60 Identities=8% Similarity=0.046 Sum_probs=39.1
Q ss_pred CCCEEEEECCchhHHHHH----HHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 51 TGNEVCEVGPGPGSITRS----ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~----La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
++.++|=.|+ +|.++.. |++++ .+|++++.++.-.+.+.+.....+.++.++.+|+.+.+
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~ 72 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAG-ADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPE 72 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 4678888885 4555554 44444 69999998876555444433333456888899987643
No 437
>KOG1098|consensus
Probab=53.69 E-value=14 Score=36.89 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=29.6
Q ss_pred CCCCCEEEEECCchhHHHHHHHhhCC--CeEEEEeCCc
Q psy17126 49 TITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDP 84 (240)
Q Consensus 49 ~~~~~~VLEIG~GtG~lt~~La~~~~--~~V~avEid~ 84 (240)
+.++..|||+||-+|+.....++..+ +-|+|||+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 35778899999999999888887642 6799999765
No 438
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.56 E-value=24 Score=31.22 Aligned_cols=38 Identities=21% Similarity=0.171 Sum_probs=33.5
Q ss_pred hhHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q psy17126 166 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCE 203 (240)
Q Consensus 166 ~~~~~~l~~~gi~~~~R~e~ls~~~f~~L~~~l~~~~~ 203 (240)
-.++++|-.++|+|..++.+||.+++.+|...+.+.+.
T Consensus 174 iyadEiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~vL~ 211 (272)
T TIGR00577 174 IYADEVLFRAGIHPERLANSLSKEECELLHRAIKEVLR 211 (272)
T ss_pred HHHHHHHHHcCCCcchhhccCCHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999998876433
No 439
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.42 E-value=69 Score=27.63 Aligned_cols=84 Identities=15% Similarity=0.220 Sum_probs=48.0
Q ss_pred CCCEEEEECCch----h-HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccc
Q psy17126 51 TGNEVCEVGPGP----G-SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRD 124 (240)
Q Consensus 51 ~~~~VLEIG~Gt----G-~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~ 124 (240)
.+.++|=.|+|. | .++..|++.+ .+|+.++.+....+.+++..... +.+.++.+|+.+.+ ...++... ...
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G-~~vil~~r~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~-~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQNDKLKGRVEEFAAQL-GSDIVLPCDVAEDASIDAMFAEL-GKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCC-CEEEEEecchhHHHHHHHHHhcc-CCceEeecCCCCHHHHHHHHHHH-Hhh
Confidence 467888899864 3 2456666664 68888887644334444332222 44667888987643 22222211 111
Q ss_pred ccCCCCceEEEecCCC
Q psy17126 125 WSEGLPGIRIIGNLPF 140 (240)
Q Consensus 125 ~~~~~~~~~VvsNlPY 140 (240)
| ++.|.+|.|--+
T Consensus 82 ~---g~iD~linnAg~ 94 (262)
T PRK07984 82 W---PKFDGFVHSIGF 94 (262)
T ss_pred c---CCCCEEEECCcc
Confidence 2 457889988754
No 440
>PRK07109 short chain dehydrogenase; Provisional
Probab=53.31 E-value=82 Score=28.29 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=48.9
Q ss_pred CCCEEEEECCchhHHHHH----HHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126 51 TGNEVCEVGPGPGSITRS----ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW 125 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~----La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~ 125 (240)
.+.+||=.|++ |.++.. |++++ .+|+.+..++.-++.+.+.+...+.++.++.+|+.+.. +...+... ...|
T Consensus 7 ~~k~vlITGas-~gIG~~la~~la~~G-~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~-~~~~ 83 (334)
T PRK07109 7 GRQVVVITGAS-AGVGRATARAFARRG-AKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRA-EEEL 83 (334)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHH-HHHC
Confidence 45678888854 344443 44444 68999998876665554444444567888999987643 12221110 0112
Q ss_pred cCCCCceEEEecCCC
Q psy17126 126 SEGLPGIRIIGNLPF 140 (240)
Q Consensus 126 ~~~~~~~~VvsNlPY 140 (240)
++.|.+|.|--.
T Consensus 84 ---g~iD~lInnAg~ 95 (334)
T PRK07109 84 ---GPIDTWVNNAMV 95 (334)
T ss_pred ---CCCCEEEECCCc
Confidence 356888877643
No 441
>PRK05876 short chain dehydrogenase; Provisional
Probab=53.27 E-value=70 Score=27.70 Aligned_cols=84 Identities=20% Similarity=0.062 Sum_probs=46.7
Q ss_pred CCCEEEEECCchhHHHHH----HHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126 51 TGNEVCEVGPGPGSITRS----ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW 125 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~----La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~ 125 (240)
.+.++|=.|++ |.++.. |++.+ .+|+.++.++.-++.+.+.+...+.++.++.+|+.+.+ +..++... ...+
T Consensus 5 ~~k~vlVTGas-~gIG~ala~~La~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~~~~ 81 (275)
T PRK05876 5 PGRGAVITGGA-SGIGLATGTEFARRG-ARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEA-FRLL 81 (275)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH-HHHc
Confidence 45678877775 444444 44444 68999998876554443333333356788889987643 12222111 0011
Q ss_pred cCCCCceEEEecCCC
Q psy17126 126 SEGLPGIRIIGNLPF 140 (240)
Q Consensus 126 ~~~~~~~~VvsNlPY 140 (240)
++.|.||.|--+
T Consensus 82 ---g~id~li~nAg~ 93 (275)
T PRK05876 82 ---GHVDVVFSNAGI 93 (275)
T ss_pred ---CCCCEEEECCCc
Confidence 346778877643
No 442
>PRK08339 short chain dehydrogenase; Provisional
Probab=53.22 E-value=69 Score=27.45 Aligned_cols=82 Identities=11% Similarity=0.117 Sum_probs=48.6
Q ss_pred CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-CCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126 51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-SPCPVHFHLGDVMSFT-MQNMFSEDRRRDW 125 (240)
Q Consensus 51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~ 125 (240)
.++++|=.|++.|. ++..|++.+ .+|+.++.++.-++.+.+.... .+.++.++.+|+.+.+ ...++... ..|
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~--~~~ 83 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAG-ADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKEL--KNI 83 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHH--Hhh
Confidence 46778888876442 344555554 6899999987655554443322 2357889999998753 22222221 112
Q ss_pred cCCCCceEEEecC
Q psy17126 126 SEGLPGIRIIGNL 138 (240)
Q Consensus 126 ~~~~~~~~VvsNl 138 (240)
+..|.+|.|.
T Consensus 84 ---g~iD~lv~na 93 (263)
T PRK08339 84 ---GEPDIFFFST 93 (263)
T ss_pred ---CCCcEEEECC
Confidence 3567787775
No 443
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=52.99 E-value=68 Score=26.39 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=48.8
Q ss_pred CCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccC
Q psy17126 52 GNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSE 127 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~ 127 (240)
+.+||=.|+ +|.++..+++.. ..+|+++..++.-.+.........+.++.++.+|+.+.. +...+... ...|
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~-- 80 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAA-VEAF-- 80 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH-HHHh--
Confidence 467887776 677666655431 357999998876655544433333467888889987643 12222111 0112
Q ss_pred CCCceEEEecCCC
Q psy17126 128 GLPGIRIIGNLPF 140 (240)
Q Consensus 128 ~~~~~~VvsNlPY 140 (240)
++.|.||.+.-+
T Consensus 81 -~~id~vi~~ag~ 92 (246)
T PRK05653 81 -GALDILVNNAGI 92 (246)
T ss_pred -CCCCEEEECCCc
Confidence 245777777644
No 444
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.85 E-value=66 Score=27.83 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=45.6
Q ss_pred CCCEEEEECCch----h-HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccc
Q psy17126 51 TGNEVCEVGPGP----G-SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRD 124 (240)
Q Consensus 51 ~~~~VLEIG~Gt----G-~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~ 124 (240)
.++++|=.|++. | .++..|++.+ .+|+.++.+....+.+++.....+ ....+.+|+.+.+ ...++... ...
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~G-a~V~~~~r~~~~~~~~~~~~~~~g-~~~~~~~Dv~d~~~v~~~~~~~-~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQG-AELAFTYQGEALGKRVKPLAESLG-SDFVLPCDVEDIASVDAVFEAL-EKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCC-CEEEEecCchHHHHHHHHHHHhcC-CceEEeCCCCCHHHHHHHHHHH-HHH
Confidence 467899999864 3 3445555654 688888776544333433322222 2346788887643 22222221 111
Q ss_pred ccCCCCceEEEecCC
Q psy17126 125 WSEGLPGIRIIGNLP 139 (240)
Q Consensus 125 ~~~~~~~~~VvsNlP 139 (240)
| +..|.+|.|--
T Consensus 83 ~---g~iD~lVnnAG 94 (271)
T PRK06505 83 W---GKLDFVVHAIG 94 (271)
T ss_pred h---CCCCEEEECCc
Confidence 2 45788887753
No 445
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=52.73 E-value=62 Score=28.51 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=34.0
Q ss_pred cCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126 47 AGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 47 ~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~ 92 (240)
+...++++||-.|+|. |.++..+++.... +|++++.+++..+.+++
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 3334788998888876 7777778876444 79999998887776554
No 446
>PRK08267 short chain dehydrogenase; Provisional
Probab=52.70 E-value=60 Score=27.42 Aligned_cols=81 Identities=10% Similarity=-0.067 Sum_probs=46.1
Q ss_pred EEEEECCchhHHH----HHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccCC
Q psy17126 54 EVCEVGPGPGSIT----RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSEG 128 (240)
Q Consensus 54 ~VLEIG~GtG~lt----~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~~ 128 (240)
++|=.|++ |.++ ..|++++ .+|++++.++.-++.+..... +.++.++++|+.+.+ +...+.... .. ..
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~-~~--~~ 75 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEG-WRVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFA-AA--TG 75 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHH-HH--cC
Confidence 56777765 4444 4455554 699999988776555543222 357899999997643 122211100 00 01
Q ss_pred CCceEEEecCCCC
Q psy17126 129 LPGIRIIGNLPFN 141 (240)
Q Consensus 129 ~~~~~VvsNlPY~ 141 (240)
++.|.||.|--+.
T Consensus 76 ~~id~vi~~ag~~ 88 (260)
T PRK08267 76 GRLDVLFNNAGIL 88 (260)
T ss_pred CCCCEEEECCCCC
Confidence 3568888876543
No 447
>PRK08251 short chain dehydrogenase; Provisional
Probab=52.46 E-value=60 Score=27.10 Aligned_cols=58 Identities=14% Similarity=0.047 Sum_probs=37.5
Q ss_pred CEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcC--CCCeEEEEcccccc
Q psy17126 53 NEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQAS--PCPVHFHLGDVMSF 111 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~--~~~v~vi~~D~~~~ 111 (240)
.++|=.| |+|.++..++++. +.+|+.++.++...+.+....... +.++.++.+|+.+.
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 65 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDH 65 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCH
Confidence 4677777 4666666655432 368999998877665544332221 24688899999874
No 448
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.33 E-value=57 Score=29.34 Aligned_cols=112 Identities=15% Similarity=0.145 Sum_probs=69.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCC-cchHHHHHHHHhcCC----CCeEEEEccccccccc
Q psy17126 40 TDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD-PRFTPCLDMLAQASP----CPVHFHLGDVMSFTMQ 114 (240)
Q Consensus 40 ~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid-~~m~~~l~~~~~~~~----~~v~vi~~D~~~~~~~ 114 (240)
.+..+...-......|+-+|||.=+-...+-. +..+.-.|+| |+.++.=++.+...+ .+++.|..|+.+-++.
T Consensus 81 fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~--~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~ 158 (297)
T COG3315 81 FDDFVRAALDAGIRQVVILGAGLDTRAYRLDW--PKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWP 158 (297)
T ss_pred HHHHHHHHHHhcccEEEEeccccccceeecCC--CCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchH
Confidence 33444333222357899999997776666543 2367778888 455554333444332 3799999999987776
Q ss_pred ccchhhhcccccCCCCceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126 115 NMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISE 156 (240)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~VvsNlPY~Iss~il~~ll~~~~~ 156 (240)
.-... .++....+-..|.-.|-+|.+..-+.+++.....
T Consensus 159 ~~L~~---~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~ 197 (297)
T COG3315 159 QALAA---AGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAA 197 (297)
T ss_pred HHHHh---cCCCcCCCeEEEeccccccCCHHHHHHHHHHHHH
Confidence 54322 3343334445566677777888887777776553
No 449
>PF09645 F-112: F-112 protein; InterPro: IPR018601 This entry is represented by Sulfolobus virus-like particle SSV1, p11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2VQC_A.
Probab=52.23 E-value=15 Score=27.58 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHHHhhCCCeeeEeccCCC
Q psy17126 187 SVQEFGQICLAYRDMCEEMPGLYEYTLEDTP 217 (240)
Q Consensus 187 s~~~f~~L~~~l~~~~~~~p~~~~~~~~~~~ 217 (240)
|+.--..+-..++.+|++||+.=-|++++++
T Consensus 34 S~s~Ay~I~~~lr~iCe~hq~eC~~~~k~rK 64 (110)
T PF09645_consen 34 SYSRAYNIQRVLRKICEQHQDECEVQKKNRK 64 (110)
T ss_dssp -HHHHHHHHHHHHHHHHH-TTTEEEEE-SS-
T ss_pred chhhhhHHHHHHHHHHHhCcchhhhhhccch
Confidence 3334457788899999999999999999984
No 450
>PRK07890 short chain dehydrogenase; Provisional
Probab=51.96 E-value=78 Score=26.52 Aligned_cols=59 Identities=14% Similarity=0.023 Sum_probs=37.7
Q ss_pred CCCEEEEECCchhHHHHH----HHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 51 TGNEVCEVGPGPGSITRS----ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~----La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
.+.+||=.|+ +|.++.. |++++ .+|+.++.++.-.+.+.......+.++.++..|+.+.
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 66 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAG-ADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDE 66 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCH
Confidence 4567887775 4445544 44444 6999999887655554443333345688899998764
No 451
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=51.22 E-value=99 Score=26.18 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=24.1
Q ss_pred CCCEEEEECCc-hhHHH-HHHHhhCCCeEEEEeCC
Q psy17126 51 TGNEVCEVGPG-PGSIT-RSILNRRPARLVLIEKD 83 (240)
Q Consensus 51 ~~~~VLEIG~G-tG~lt-~~La~~~~~~V~avEid 83 (240)
...+|+=|||| .|+.. ..|+..+.++++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35689999998 35544 45555556789999998
No 452
>PRK07806 short chain dehydrogenase; Provisional
Probab=51.15 E-value=1.1e+02 Score=25.40 Aligned_cols=83 Identities=11% Similarity=0.020 Sum_probs=43.8
Q ss_pred CCCEEEEECCchhHHHHHH----HhhCCCeEEEEeCCcc-hHHHHHHHHhcCCCCeEEEEcccccccc-cccchhhhccc
Q psy17126 51 TGNEVCEVGPGPGSITRSI----LNRRPARLVLIEKDPR-FTPCLDMLAQASPCPVHFHLGDVMSFTM-QNMFSEDRRRD 124 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~L----a~~~~~~V~avEid~~-m~~~l~~~~~~~~~~v~vi~~D~~~~~~-~~~~~~~~~~~ 124 (240)
.+.++|=.|++ |.++..+ ++.+ .+|+++..+.. ..+.+.......+.++.++.+|+.+.+- ...+... ...
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~ 81 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAG-AHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTA-REE 81 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCC-CEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH-HHh
Confidence 35688888863 3344443 3443 58988876542 2333322222224568889999986431 1222111 111
Q ss_pred ccCCCCceEEEecCC
Q psy17126 125 WSEGLPGIRIIGNLP 139 (240)
Q Consensus 125 ~~~~~~~~~VvsNlP 139 (240)
| +..|.||.|..
T Consensus 82 ~---~~~d~vi~~ag 93 (248)
T PRK07806 82 F---GGLDALVLNAS 93 (248)
T ss_pred C---CCCcEEEECCC
Confidence 2 24678887764
No 453
>PRK05854 short chain dehydrogenase; Provisional
Probab=51.07 E-value=80 Score=27.96 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=36.9
Q ss_pred CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHh-cC-CCCeEEEEccccccc
Q psy17126 51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQ-AS-PCPVHFHLGDVMSFT 112 (240)
Q Consensus 51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~-~~-~~~v~vi~~D~~~~~ 112 (240)
.+.+++=.|++.|. ++..|++.+ .+|+.+..+..-.+.+.+.+. .. ..++.++.+|+.+.+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~ 78 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAG-AEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLA 78 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHH
Confidence 46778877865442 234444454 689999888665444333222 22 246888999987754
No 454
>PRK08303 short chain dehydrogenase; Provisional
Probab=50.72 E-value=98 Score=27.45 Aligned_cols=82 Identities=11% Similarity=0.009 Sum_probs=45.6
Q ss_pred CCCEEEEECCchhHHHHH----HHhhCCCeEEEEeCCc----------chHHHHHHHHhcCCCCeEEEEccccccc-ccc
Q psy17126 51 TGNEVCEVGPGPGSITRS----ILNRRPARLVLIEKDP----------RFTPCLDMLAQASPCPVHFHLGDVMSFT-MQN 115 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~----La~~~~~~V~avEid~----------~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~ 115 (240)
.+.++|=.|++.| ++.. |++.+ .+|+.++.+. +-++.+.+.....+.++.++++|+.+.. ...
T Consensus 7 ~~k~~lITGgs~G-IG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGATRG-AGRGIAVELGAAG-ATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCC-CEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 4678999997654 4444 44443 6899988763 2233333333333456778899987643 222
Q ss_pred cchhhhcccccCCCCceEEEecC
Q psy17126 116 MFSEDRRRDWSEGLPGIRIIGNL 138 (240)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~VvsNl 138 (240)
++.... ..+ ++.|.+|.|-
T Consensus 85 ~~~~~~-~~~---g~iDilVnnA 103 (305)
T PRK08303 85 LVERID-REQ---GRLDILVNDI 103 (305)
T ss_pred HHHHHH-HHc---CCccEEEECC
Confidence 222110 111 3568888886
No 455
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=50.34 E-value=83 Score=27.88 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=45.2
Q ss_pred CCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccC
Q psy17126 52 GNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSE 127 (240)
Q Consensus 52 ~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~ 127 (240)
+.++|=.|++.|. ++..|++++..+|+.+..+..-.+.+.+.....+.++.++.+|+.+.+ ...++.... ..
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~-~~--- 78 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFR-ES--- 78 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHH-Hh---
Confidence 3467777765433 334455553258888887765544443333222356788888987653 222222110 01
Q ss_pred CCCceEEEecCC
Q psy17126 128 GLPGIRIIGNLP 139 (240)
Q Consensus 128 ~~~~~~VvsNlP 139 (240)
.+..|.+|.|--
T Consensus 79 ~~~iD~lI~nAG 90 (314)
T TIGR01289 79 GRPLDALVCNAA 90 (314)
T ss_pred CCCCCEEEECCC
Confidence 135688888854
No 456
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=50.20 E-value=60 Score=30.85 Aligned_cols=55 Identities=25% Similarity=0.282 Sum_probs=35.0
Q ss_pred ccCCHHHHHHHHHHcCCC-CCCEEEEECCchhHHH-HHHHhhCCCeEEEEeCCcchH
Q psy17126 33 FLFEPRLTDKIVRNAGTI-TGNEVCEVGPGPGSIT-RSILNRRPARLVLIEKDPRFT 87 (240)
Q Consensus 33 fl~d~~i~~~iv~~~~~~-~~~~VLEIG~GtG~lt-~~La~~~~~~V~avEid~~m~ 87 (240)
+.+...+.+.|.+..++. .+++|+=+|+|.=... ...++....+|+.+|+++.-.
T Consensus 192 ~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra 248 (425)
T PRK05476 192 YGTGESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICA 248 (425)
T ss_pred HHHHhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhh
Confidence 334455566665554443 7899999999863332 233333346999999998654
No 457
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=50.17 E-value=9 Score=35.02 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=22.3
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhccc
Q psy17126 130 PGIRIIGNLPFNVSTPLIIKWIQAISE 156 (240)
Q Consensus 130 ~~~~VvsNlPY~Iss~il~~ll~~~~~ 156 (240)
..|+||.||||+.-...+..|++....
T Consensus 135 eADIVVTNPPFSLFrEyv~~Li~~~Kk 161 (336)
T PF13651_consen 135 EADIVVTNPPFSLFREYVAQLIEYDKK 161 (336)
T ss_pred cCCEEEeCCCcHHHHHHHHHHHHhCCC
Confidence 469999999999988888888877554
No 458
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=50.06 E-value=63 Score=28.57 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=33.6
Q ss_pred HHHcCCCCCCEEEEECCc-hhHHHHHHHhhCCCe-EEEEeCCcchHHHHHH
Q psy17126 44 VRNAGTITGNEVCEVGPG-PGSITRSILNRRPAR-LVLIEKDPRFTPCLDM 92 (240)
Q Consensus 44 v~~~~~~~~~~VLEIG~G-tG~lt~~La~~~~~~-V~avEid~~m~~~l~~ 92 (240)
+..+.+.++++||=+|+| .|.++..+++....+ |++++.+++-.+.+++
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 345567789999988875 244455666654445 9999998877666654
No 459
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=49.63 E-value=28 Score=26.11 Aligned_cols=32 Identities=9% Similarity=0.142 Sum_probs=27.4
Q ss_pred chhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 61 GPGSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 61 GtG~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
|.|.++..+++....+|++++.++.-.+.+++
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh
Confidence 67999999998755899999999988888775
No 460
>PRK06125 short chain dehydrogenase; Provisional
Probab=49.62 E-value=1.1e+02 Score=25.84 Aligned_cols=59 Identities=22% Similarity=0.197 Sum_probs=38.0
Q ss_pred CCCEEEEECCchhHHHHHH----HhhCCCeEEEEeCCcchHHHHHHHHhc-CCCCeEEEEcccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSI----LNRRPARLVLIEKDPRFTPCLDMLAQA-SPCPVHFHLGDVMSF 111 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~L----a~~~~~~V~avEid~~m~~~l~~~~~~-~~~~v~vi~~D~~~~ 111 (240)
.+.++|=.|++ |.++..+ ++.+ .+|++++.++...+.+...+.. .+.++.++.+|+.+.
T Consensus 6 ~~k~vlItG~~-~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~ 69 (259)
T PRK06125 6 AGKRVLITGAS-KGIGAAAAEAFAAEG-CHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSP 69 (259)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCH
Confidence 35788888864 4455444 4444 5999999987766555443332 235688888998753
No 461
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=49.55 E-value=37 Score=32.86 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=48.4
Q ss_pred CCCCCCHHHHHHHHHhccccccccchh-----h---hhHHHHHHHcCCC---CCCCCCCCCHHHHHHHHHHHHH
Q psy17126 138 LPFNVSTPLIIKWIQAISENLLFPKHK-----R---QLVVSLLERACVK---PILRPYQLSVQEFGQICLAYRD 200 (240)
Q Consensus 138 lPY~Iss~il~~ll~~~~~~~~~~~~~-----~---~~~~~~l~~~gi~---~~~R~e~ls~~~f~~L~~~l~~ 200 (240)
=|+.+....|.+++..... ..-..++ + ..+++++..+|++ ++.+|..|+-+|..+|.++++.
T Consensus 228 HP~gv~~~~l~~m~~~t~~-~~l~~fL~~~f~~v~~~~a~~~~~~~g~~~~~~~~~~~~l~~~~~~~l~~~~~~ 300 (488)
T TIGR01052 228 HPHGVTIDDLKSMARSTRA-STLRSFLVSEFSRIGEKKIKELLEKYGIDVDPLDKKPKELTWDEAEKIVNAFKE 300 (488)
T ss_pred CCCccCHHHHHHHHHhcCc-ccHHHHHHHhhcccCHHHHHHHHHHhCCCccccCCChhhCCHHHHHHHHHHHHh
Confidence 3788999999999987663 1111222 2 4678888999999 9999999999999999998876
No 462
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.42 E-value=62 Score=27.71 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=46.0
Q ss_pred CCCEEEEECC-chhHHHHHHH----hhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccc
Q psy17126 51 TGNEVCEVGP-GPGSITRSIL----NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRD 124 (240)
Q Consensus 51 ~~~~VLEIG~-GtG~lt~~La----~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~ 124 (240)
.+.++|=.|+ |++.++..++ +.+ .+|+....+.+..+.+++..... +....+++|+.+.+ ...++... ...
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~-~~~ 81 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQG-AELAFTYVVDKLEERVRKMAAEL-DSELVFRCDVASDDEINQVFADL-GKH 81 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCcHHHHHHHHHHHhcc-CCceEEECCCCCHHHHHHHHHHH-HHH
Confidence 4678888997 3444544444 443 68887765544444444433322 33457888987643 22222211 112
Q ss_pred ccCCCCceEEEecCCC
Q psy17126 125 WSEGLPGIRIIGNLPF 140 (240)
Q Consensus 125 ~~~~~~~~~VvsNlPY 140 (240)
| ++.|.+|.|--.
T Consensus 82 ~---g~iD~lVnnAG~ 94 (261)
T PRK08690 82 W---DGLDGLVHSIGF 94 (261)
T ss_pred h---CCCcEEEECCcc
Confidence 2 457889988643
No 463
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=49.09 E-value=61 Score=29.02 Aligned_cols=58 Identities=22% Similarity=0.174 Sum_probs=34.2
Q ss_pred CCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 52 GNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
+.+||=.| |+|.++..+++.. ..+|++++.++.-......... ...+++++.+|+.+.
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~ 64 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN-LAKKIEDHFGDIRDA 64 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh-hcCCceEEEccCCCH
Confidence 56788777 4555555444431 3689999987654332221111 124678888998764
No 464
>PRK06181 short chain dehydrogenase; Provisional
Probab=48.92 E-value=99 Score=26.06 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=36.0
Q ss_pred CEEEEECCchhHHHHHHH----hhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 53 NEVCEVGPGPGSITRSIL----NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 53 ~~VLEIG~GtG~lt~~La----~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
.+||=.|+ +|.++..++ +.+ .+|++++.++.-.+.+.+.....+.++.++.+|+.+..
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~ 63 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAG-AQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAE 63 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 35666664 445555444 443 69999998876555444333333467888999987643
No 465
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.87 E-value=1e+02 Score=26.71 Aligned_cols=84 Identities=15% Similarity=0.110 Sum_probs=45.9
Q ss_pred CCCEEEEECCc----hhH-HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccc
Q psy17126 51 TGNEVCEVGPG----PGS-ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRD 124 (240)
Q Consensus 51 ~~~~VLEIG~G----tG~-lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~ 124 (240)
.++++|=.|++ .|. ++..|++.+ .+|+.++.+.+..+.+++.....+.. .++.+|+.+.+ ...++... ...
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G-~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i-~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQG-AELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESL-KKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHH-HHH
Confidence 46788889975 343 234455554 68988888754333444333333333 56788887753 22222211 111
Q ss_pred ccCCCCceEEEecCCC
Q psy17126 125 WSEGLPGIRIIGNLPF 140 (240)
Q Consensus 125 ~~~~~~~~~VvsNlPY 140 (240)
| +..|.+|.|--+
T Consensus 81 ~---g~iDilVnnAG~ 93 (274)
T PRK08415 81 L---GKIDFIVHSVAF 93 (274)
T ss_pred c---CCCCEEEECCcc
Confidence 2 457888887643
No 466
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=48.77 E-value=62 Score=29.00 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=30.4
Q ss_pred CCCCCEEEEECCch-hHHHHHHHhhCCCeEEEEeC---CcchHHHHH
Q psy17126 49 TITGNEVCEVGPGP-GSITRSILNRRPARLVLIEK---DPRFTPCLD 91 (240)
Q Consensus 49 ~~~~~~VLEIG~Gt-G~lt~~La~~~~~~V~avEi---d~~m~~~l~ 91 (240)
..++++||=+|+|. |.++..+++....+|++++. ++.-.+.++
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~ 216 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE 216 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 45788999999875 66677777764458999987 444444444
No 467
>PRK07576 short chain dehydrogenase; Provisional
Probab=48.75 E-value=1e+02 Score=26.32 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=37.2
Q ss_pred CCCEEEEECCchhHHHHH----HHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 51 TGNEVCEVGPGPGSITRS----ILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~----La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
++.++|=.|. +|.++.. |+.++ .+|++++.+++-+....+.......++.++.+|+.+.
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 70 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAG-ANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDY 70 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCH
Confidence 4678888885 4455444 44443 6899999887655544333333335677888998763
No 468
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=48.68 E-value=90 Score=26.34 Aligned_cols=83 Identities=10% Similarity=0.036 Sum_probs=44.1
Q ss_pred CCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
.+.++|=.|+. |.++..+++.. ..+|++++.+.. -+..++ ....+.++..++.|+.+.+ +..++.+. ...|
T Consensus 9 ~~k~~lItG~~-~gIG~a~a~~l~~~G~~vv~~~~~~~-~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~-~~~~- 83 (253)
T PRK08993 9 EGKVAVVTGCD-TGLGQGMALGLAEAGCDIVGINIVEP-TETIEQ-VTALGRRFLSLTADLRKIDGIPALLERA-VAEF- 83 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEecCcch-HHHHHH-HHhcCCeEEEEECCCCCHHHHHHHHHHH-HHHh-
Confidence 35788888864 45555444431 368998876542 122222 2223456788889987642 22222211 0112
Q ss_pred CCCCceEEEecCCC
Q psy17126 127 EGLPGIRIIGNLPF 140 (240)
Q Consensus 127 ~~~~~~~VvsNlPY 140 (240)
+..|.+|.|.-+
T Consensus 84 --~~~D~li~~Ag~ 95 (253)
T PRK08993 84 --GHIDILVNNAGL 95 (253)
T ss_pred --CCCCEEEECCCC
Confidence 356888877543
No 469
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=48.65 E-value=74 Score=29.10 Aligned_cols=34 Identities=15% Similarity=0.393 Sum_probs=24.6
Q ss_pred CCCEEEEECCc-hhHH-HHHHHhhCCCeEEEEeCCc
Q psy17126 51 TGNEVCEVGPG-PGSI-TRSILNRRPARLVLIEKDP 84 (240)
Q Consensus 51 ~~~~VLEIG~G-tG~l-t~~La~~~~~~V~avEid~ 84 (240)
...+|+=|||| .|+- +..|+..+.++++.||-|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 35689999998 4544 3555555667999999884
No 470
>PRK12939 short chain dehydrogenase; Provisional
Probab=48.48 E-value=1.1e+02 Score=25.27 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=39.1
Q ss_pred CCCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
++.++|=.|+ +|.++..+++.. ..+|++++.++.-+....+.......++.++.+|+.+.+
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 69 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPA 69 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 4577886675 556665555431 368999988876555544433333457899999997643
No 471
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=48.38 E-value=79 Score=26.81 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=35.8
Q ss_pred CCCEEEEECCchhHHH----HHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 51 TGNEVCEVGPGPGSIT----RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt----~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
++.++|=.|++. .++ ..|++.+ .+|+.++.+...++.+.. ..+.++.++.+|+.+.
T Consensus 4 ~~k~vlItGas~-gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~l~~---~~~~~~~~~~~D~~~~ 63 (262)
T TIGR03325 4 KGEVVLVTGGAS-GLGRAIVDRFVAEG-ARVAVLDKSAAGLQELEA---AHGDAVVGVEGDVRSL 63 (262)
T ss_pred CCcEEEEECCCC-hHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHh---hcCCceEEEEeccCCH
Confidence 356788888754 344 4444454 689999988765544432 2235688889998764
No 472
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=48.34 E-value=73 Score=28.74 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=33.0
Q ss_pred HHcCCCCCCEEEEECCch-hHHHHHHHhhCCC-eEEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPA-RLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~-~V~avEid~~m~~~l~~ 92 (240)
+...+.++++||=.|+|. |.++..+++.... +|++++.+++-.+.+++
T Consensus 181 ~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 181 NVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 345677899999888642 3344556665434 79999999887777654
No 473
>PRK08264 short chain dehydrogenase; Validated
Probab=48.30 E-value=61 Score=26.88 Aligned_cols=53 Identities=23% Similarity=0.171 Sum_probs=34.6
Q ss_pred CCCEEEEECCchhHHHHHHHh----hCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILN----RRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~----~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
.+.+||=+|+ +|.++..+++ ++..+|+++..++.-... .+.++.++.+|+.+.
T Consensus 5 ~~~~vlItGg-sg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~~~~~~~~~~D~~~~ 61 (238)
T PRK08264 5 KGKVVLVTGA-NRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------LGPRVVPLQLDVTDP 61 (238)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCcccEEEEecChhhhhh-------cCCceEEEEecCCCH
Confidence 3567888884 6666655544 432389999887653221 235788999999764
No 474
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=48.19 E-value=23 Score=29.71 Aligned_cols=57 Identities=12% Similarity=0.204 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEECCchhHHHHHHHhhC-CCeEEEEeCCcchHHHHHHHH
Q psy17126 36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRR-PARLVLIEKDPRFTPCLDMLA 94 (240)
Q Consensus 36 d~~i~~~iv~~~~~~~~~~VLEIG~GtG~lt~~La~~~-~~~V~avEid~~m~~~l~~~~ 94 (240)
|-.+..+|+.... .+.+-+|||+..|.+.-..+++. .++++|+|.-.+|-...+-+.
T Consensus 66 dlgmrhwivnhck--hdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnv 123 (286)
T PF05575_consen 66 DLGMRHWIVNHCK--HDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNV 123 (286)
T ss_pred ccchhHhhhhhcc--CCceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeee
Confidence 4446677776653 56789999999999987777653 479999999888866555443
No 475
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=47.79 E-value=1.1e+02 Score=26.77 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=36.2
Q ss_pred CCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHh--cCCCCeEEEEccccccc
Q psy17126 52 GNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQ--ASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~--~~~~~v~vi~~D~~~~~ 112 (240)
+.+||=.|+ +|.++..++++. ..+|+++..+............ ...++++++.+|+.+..
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 68 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEG 68 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcc
Confidence 567777775 677766665532 3589988877654322222111 11257899999998743
No 476
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=47.79 E-value=35 Score=33.89 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=24.9
Q ss_pred CCCEEEEECCchhHHHHHHHhhC-------------CCeEEEEeCCc
Q psy17126 51 TGNEVCEVGPGPGSITRSILNRR-------------PARLVLIEKDP 84 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~~~-------------~~~V~avEid~ 84 (240)
+.-+|+|+|=|+|.-+..+.+.. .-+++++|.+|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 34789999999999766555211 13899999876
No 477
>PRK06182 short chain dehydrogenase; Validated
Probab=47.67 E-value=69 Score=27.38 Aligned_cols=79 Identities=11% Similarity=-0.027 Sum_probs=44.9
Q ss_pred CCEEEEECCchhHHHHHHHhhC---CCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccC
Q psy17126 52 GNEVCEVGPGPGSITRSILNRR---PARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSE 127 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~~La~~~---~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~ 127 (240)
+.+|+=.|+ +|.++..+++.. ..+|++++.+++-+..+. . .+++++.+|+.+.+ +...+.... ..
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~---~---~~~~~~~~Dv~~~~~~~~~~~~~~-~~--- 71 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDLA---S---LGVHPLSLDVTDEASIKAAVDTII-AE--- 71 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---h---CCCeEEEeeCCCHHHHHHHHHHHH-Hh---
Confidence 467887785 445555555431 368999988865433221 1 34788899987643 112221110 01
Q ss_pred CCCceEEEecCCCC
Q psy17126 128 GLPGIRIIGNLPFN 141 (240)
Q Consensus 128 ~~~~~~VvsNlPY~ 141 (240)
.+..|.+|.|-.+.
T Consensus 72 ~~~id~li~~ag~~ 85 (273)
T PRK06182 72 EGRIDVLVNNAGYG 85 (273)
T ss_pred cCCCCEEEECCCcC
Confidence 13578899887654
No 478
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=47.67 E-value=79 Score=28.00 Aligned_cols=48 Identities=10% Similarity=0.044 Sum_probs=37.0
Q ss_pred HHcCCCCCCEEEEECC--chhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGP--GPGSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~--GtG~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
....+++|++||=.|+ |.|.++..+++....+|+++..+++-.+.+++
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKN 194 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 3456788999999986 67888888888655689999888777666654
No 479
>PLN02494 adenosylhomocysteinase
Probab=47.36 E-value=85 Score=30.36 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEECCchhHHH-HHHHhhCCCeEEEEeCCcchH
Q psy17126 37 PRLTDKIVRNAGT-ITGNEVCEVGPGPGSIT-RSILNRRPARLVLIEKDPRFT 87 (240)
Q Consensus 37 ~~i~~~iv~~~~~-~~~~~VLEIG~GtG~lt-~~La~~~~~~V~avEid~~m~ 87 (240)
..+++.|++..++ ..|++|+=+|+|.=... ...++....+|+++|.|+.-.
T Consensus 238 qS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~ 290 (477)
T PLN02494 238 HSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICA 290 (477)
T ss_pred ccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence 4467788887665 46899999999963332 333332346899999998643
No 480
>PLN02780 ketoreductase/ oxidoreductase
Probab=47.12 E-value=64 Score=28.89 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=40.0
Q ss_pred CCCEEEEECCchh---HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhc-CC-CCeEEEEccccc
Q psy17126 51 TGNEVCEVGPGPG---SITRSILNRRPARLVLIEKDPRFTPCLDMLAQA-SP-CPVHFHLGDVMS 110 (240)
Q Consensus 51 ~~~~VLEIG~GtG---~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~-~~-~~v~vi~~D~~~ 110 (240)
.|..+|=.|++.| .++..|++++ .+|+.++.+++-++.+.+.... .+ .++..+..|+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKG-LNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 4678999997666 3556666665 6899999998776655443332 21 356777888763
No 481
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=46.89 E-value=79 Score=27.32 Aligned_cols=33 Identities=33% Similarity=0.407 Sum_probs=24.6
Q ss_pred CCEEEEECCc-hhHHHHHHH-hhCCCeEEEEeCCc
Q psy17126 52 GNEVCEVGPG-PGSITRSIL-NRRPARLVLIEKDP 84 (240)
Q Consensus 52 ~~~VLEIG~G-tG~lt~~La-~~~~~~V~avEid~ 84 (240)
..+|+=+||| .|+.+...+ ..+.++++-+|-|.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999997 777765444 44558999999775
No 482
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=46.29 E-value=89 Score=27.22 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=36.8
Q ss_pred HHcCCCCCCEEEEEC--CchhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVG--PGPGSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG--~GtG~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
....+.++++||=.| .|.|.++..+++....+|+++..+++-.+.+++
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 445677899998887 467878888888755689999988877766654
No 483
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=46.27 E-value=1.2e+02 Score=28.49 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=37.7
Q ss_pred chhH--HHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccccccccchhhhcccccCCCCceEEEecC
Q psy17126 61 GPGS--ITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNL 138 (240)
Q Consensus 61 GtG~--lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~~~~~~~~~~~~~~~~~~~~~~VvsNl 138 (240)
|+|. ++..|.+++ .+|++.|..... .... ++. ..+++..+ ... .. + ..+|.||-++
T Consensus 9 gsGm~~la~~L~~~G-~~v~~~D~~~~~--~~~~-l~~--~gi~~~~g-~~~---~~-~-----------~~~d~vV~sp 66 (448)
T TIGR01082 9 GIGMSGIAEILLNRG-YQVSGSDIAENA--TTKR-LEA--LGIPIYIG-HSA---EN-L-----------DDADVVVVSA 66 (448)
T ss_pred HHHHHHHHHHHHHCC-CeEEEECCCcch--HHHH-HHH--CcCEEeCC-CCH---HH-C-----------CCCCEEEECC
Confidence 5665 566666664 799999976542 1221 222 24666544 111 11 1 1246677666
Q ss_pred CCCCCHHHHHHHHH
Q psy17126 139 PFNVSTPLIIKWIQ 152 (240)
Q Consensus 139 PY~Iss~il~~ll~ 152 (240)
-...+.|.+....+
T Consensus 67 gi~~~~p~~~~a~~ 80 (448)
T TIGR01082 67 AIKDDNPEIVEAKE 80 (448)
T ss_pred CCCCCCHHHHHHHH
Confidence 55556677766544
No 484
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=45.97 E-value=86 Score=26.18 Aligned_cols=81 Identities=7% Similarity=-0.100 Sum_probs=44.5
Q ss_pred EEEEECCchhHHHHHHH----hhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccccCC
Q psy17126 54 EVCEVGPGPGSITRSIL----NRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWSEG 128 (240)
Q Consensus 54 ~VLEIG~GtG~lt~~La----~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~~~ 128 (240)
++|=.|+ +|.++..++ +.+ .+|+.++.++.-.+.+.+.....+.++.++.+|+.+.+ +...+.... . ..
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~-~---~~ 75 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDG-FAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAA-E---KF 75 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH-H---Hc
Confidence 4555664 455555444 443 68999988865554443333333456888999987643 112211100 0 01
Q ss_pred CCceEEEecCCC
Q psy17126 129 LPGIRIIGNLPF 140 (240)
Q Consensus 129 ~~~~~VvsNlPY 140 (240)
++.|.||.|...
T Consensus 76 ~~id~vi~~ag~ 87 (254)
T TIGR02415 76 GGFDVMVNNAGV 87 (254)
T ss_pred CCCCEEEECCCc
Confidence 245788887765
No 485
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=45.73 E-value=72 Score=28.03 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=37.0
Q ss_pred HHcCCCCCCEEEEECC--chhHHHHHHHhhCCCeEEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGP--GPGSITRSILNRRPARLVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~--GtG~lt~~La~~~~~~V~avEid~~m~~~l~~ 92 (240)
+...+.++++||=.|+ |.|.++..+++....+|+++..+++-.+.+++
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~ 181 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK 181 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4556788999998884 57888888888755689999988777666653
No 486
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=45.41 E-value=1.1e+02 Score=26.07 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=23.2
Q ss_pred CCEEEEECCc-hhHHHH-HHHhhCCCeEEEEeCCc
Q psy17126 52 GNEVCEVGPG-PGSITR-SILNRRPARLVLIEKDP 84 (240)
Q Consensus 52 ~~~VLEIG~G-tG~lt~-~La~~~~~~V~avEid~ 84 (240)
..+|+=+||| .|+-.. .|+..+.++++.+|-|.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 5689999998 455544 44444568999997654
No 487
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.35 E-value=1.1e+02 Score=26.86 Aligned_cols=83 Identities=11% Similarity=0.005 Sum_probs=46.0
Q ss_pred CCCEEEEECCchhH---HHHHHHhhCCCeEEEEeCCc-chHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcccc
Q psy17126 51 TGNEVCEVGPGPGS---ITRSILNRRPARLVLIEKDP-RFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDW 125 (240)
Q Consensus 51 ~~~~VLEIG~GtG~---lt~~La~~~~~~V~avEid~-~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~ 125 (240)
.+.++|=.|++.|. ++..|++++ .+|+.++.+. .-.+.+.+.+...+.++.++.+|+.+.+ ...++... .. |
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~G-a~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~-~~-~ 87 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLG-ATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATA-VG-L 87 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH-HH-h
Confidence 46788888876542 334555554 6899888743 2333332222233467888999987643 12222211 11 2
Q ss_pred cCCCCceEEEecCC
Q psy17126 126 SEGLPGIRIIGNLP 139 (240)
Q Consensus 126 ~~~~~~~~VvsNlP 139 (240)
++.|.+|.|--
T Consensus 88 ---g~iD~li~nAG 98 (306)
T PRK07792 88 ---GGLDIVVNNAG 98 (306)
T ss_pred ---CCCCEEEECCC
Confidence 35688887754
No 488
>PRK06198 short chain dehydrogenase; Provisional
Probab=44.74 E-value=81 Score=26.51 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=36.0
Q ss_pred CCCEEEEECCchhHHHHHHHh----hCCCe-EEEEeCCcchHHHHHHHHhcCCCCeEEEEcccccc
Q psy17126 51 TGNEVCEVGPGPGSITRSILN----RRPAR-LVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF 111 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La~----~~~~~-V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~ 111 (240)
.+.+|+=.|+ +|.++..+++ ++ .+ |++++.++.-.......+...+.++.++..|+.+.
T Consensus 5 ~~k~vlItGa-~g~iG~~la~~l~~~G-~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~ 68 (260)
T PRK06198 5 DGKVALVTGG-TQGLGAAIARAFAERG-AAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDV 68 (260)
T ss_pred CCcEEEEeCC-CchHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCH
Confidence 4567887885 4445555443 33 45 99999876544433332333345688888998764
No 489
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=43.86 E-value=98 Score=27.43 Aligned_cols=48 Identities=29% Similarity=0.432 Sum_probs=35.1
Q ss_pred HHcCCCCCCEEEEECCch-hHHHHHHHhhCCCe-EEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGPGP-GSITRSILNRRPAR-LVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~Gt-G~lt~~La~~~~~~-V~avEid~~m~~~l~~ 92 (240)
....+.++.+||=.|+|. |.++..+++....+ |+++..+++..+.+++
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~ 205 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE 205 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 455667888888888776 77777788764445 8999888777766654
No 490
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=43.35 E-value=1.2e+02 Score=26.81 Aligned_cols=60 Identities=8% Similarity=0.093 Sum_probs=36.5
Q ss_pred CCCEEEEECCchhHHH----HHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc
Q psy17126 51 TGNEVCEVGPGPGSIT----RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT 112 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt----~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~ 112 (240)
.+.+||=.|+. |.++ ..|++++ .+|+.++.+..-.+.+.+.......++.++.+|+.+.+
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~ 68 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAKRG-WHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLD 68 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHH
Confidence 45678888864 3344 4444454 68999988765544443322222346888889987643
No 491
>PRK08278 short chain dehydrogenase; Provisional
Probab=43.29 E-value=1.4e+02 Score=25.67 Aligned_cols=84 Identities=13% Similarity=0.038 Sum_probs=46.0
Q ss_pred CCCEEEEECCchhHHHH----HHHhhCCCeEEEEeCCcch-------HHHHHHHHhcCCCCeEEEEccccccc-ccccch
Q psy17126 51 TGNEVCEVGPGPGSITR----SILNRRPARLVLIEKDPRF-------TPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFS 118 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~----~La~~~~~~V~avEid~~m-------~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~ 118 (240)
.+.++|=.|++. .++. .|++++ .+|++++.+..- +..+.+.....+.++.++.+|+.+.. +..++.
T Consensus 5 ~~k~vlItGas~-gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 5 SGKTLFITGASR-GIGLAIALRAARDG-ANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCC-CEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 356788888754 4444 444454 689999876531 22222222233467888999987753 122222
Q ss_pred hhhcccccCCCCceEEEecCCC
Q psy17126 119 EDRRRDWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~VvsNlPY 140 (240)
.. ...| +..|.+|.|-.+
T Consensus 83 ~~-~~~~---g~id~li~~ag~ 100 (273)
T PRK08278 83 KA-VERF---GGIDICVNNASA 100 (273)
T ss_pred HH-HHHh---CCCCEEEECCCC
Confidence 11 0111 356888877654
No 492
>TIGR01712 phage_N6A_met phage N-6-adenine-methyltransferase. This is a model for a phage-borne DNA N-6-adenine-methyltransferase.
Probab=43.24 E-value=24 Score=29.19 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=17.3
Q ss_pred EEEecCCCCCCHHHHHHHHHh
Q psy17126 133 RIIGNLPFNVSTPLIIKWIQA 153 (240)
Q Consensus 133 ~VvsNlPY~Iss~il~~ll~~ 153 (240)
.|+.||||.-..|-+.+..++
T Consensus 64 ~vf~NPPYS~~~~~v~kaae~ 84 (166)
T TIGR01712 64 AVWLNPPYSRPDIFVNKTAWF 84 (166)
T ss_pred eEEecCCCCcHHHHHHHHHHH
Confidence 799999998777888887664
No 493
>PRK06128 oxidoreductase; Provisional
Probab=43.21 E-value=96 Score=27.10 Aligned_cols=84 Identities=13% Similarity=0.013 Sum_probs=44.6
Q ss_pred CCCEEEEECCchhHHHHHHH----hhCCCeEEEEeCCcch--HHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhcc
Q psy17126 51 TGNEVCEVGPGPGSITRSIL----NRRPARLVLIEKDPRF--TPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRR 123 (240)
Q Consensus 51 ~~~~VLEIG~GtG~lt~~La----~~~~~~V~avEid~~m--~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~ 123 (240)
.+.+||=.|+ +|.++..++ +.+ .+|+.+..+... .+...+.....+.++.++.+|+.+.+ ..+++... ..
T Consensus 54 ~~k~vlITGa-s~gIG~~~a~~l~~~G-~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~-~~ 130 (300)
T PRK06128 54 QGRKALITGA-DSGIGRATAIAFAREG-ADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERA-VK 130 (300)
T ss_pred CCCEEEEecC-CCcHHHHHHHHHHHcC-CEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHH-HH
Confidence 4678888885 444444444 443 578777655432 22222223333456888999997643 12222211 01
Q ss_pred cccCCCCceEEEecCCC
Q psy17126 124 DWSEGLPGIRIIGNLPF 140 (240)
Q Consensus 124 ~~~~~~~~~~VvsNlPY 140 (240)
.+ +..|.+|.|--+
T Consensus 131 ~~---g~iD~lV~nAg~ 144 (300)
T PRK06128 131 EL---GGLDILVNIAGK 144 (300)
T ss_pred Hh---CCCCEEEECCcc
Confidence 11 356888887643
No 494
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.09 E-value=1.2e+02 Score=25.78 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=45.2
Q ss_pred CCCEEEEECCch----h-HHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccc
Q psy17126 51 TGNEVCEVGPGP----G-SITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRD 124 (240)
Q Consensus 51 ~~~~VLEIG~Gt----G-~lt~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~ 124 (240)
.++.+|=.|++. | .++..|++.+ .+|+..+.+....+.+++.....+ ...++.+|+.+.+ ...++... ...
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G-~~v~~~~r~~~~~~~~~~l~~~~g-~~~~~~~Dv~~~~~v~~~~~~~-~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHG-AELWFTYQSEVLEKRVKPLAEEIG-CNFVSELDVTNPKSISNLFDDI-KEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcC-CEEEEEeCchHHHHHHHHHHHhcC-CceEEEccCCCHHHHHHHHHHH-HHH
Confidence 467888889865 3 3445666665 688888766433333443332222 2345678887643 12222111 011
Q ss_pred ccCCCCceEEEecCCC
Q psy17126 125 WSEGLPGIRIIGNLPF 140 (240)
Q Consensus 125 ~~~~~~~~~VvsNlPY 140 (240)
| +..|.+|.|.-+
T Consensus 84 ~---g~iDilVnnag~ 96 (260)
T PRK06603 84 W---GSFDFLLHGMAF 96 (260)
T ss_pred c---CCccEEEEcccc
Confidence 1 457888888643
No 495
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=43.08 E-value=77 Score=27.73 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=34.8
Q ss_pred HHcCCCCCCEEEEECCc-hhHHHHHHHhhCCCe-EEEEeCCcchHHHHHH
Q psy17126 45 RNAGTITGNEVCEVGPG-PGSITRSILNRRPAR-LVLIEKDPRFTPCLDM 92 (240)
Q Consensus 45 ~~~~~~~~~~VLEIG~G-tG~lt~~La~~~~~~-V~avEid~~m~~~l~~ 92 (240)
....+.++++||-+|+| .|..+..+++....+ |++++.++...+.+++
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 202 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK 202 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 44566788999999876 366667777764445 8999999887777653
No 496
>KOG2798|consensus
Probab=42.89 E-value=25 Score=32.31 Aligned_cols=50 Identities=12% Similarity=0.041 Sum_probs=37.0
Q ss_pred HHHHHHHHcCC----CCCCEEEEECCchhHHHHHHHhhCCCeEEEEeCCcchHHH
Q psy17126 39 LTDKIVRNAGT----ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPC 89 (240)
Q Consensus 39 i~~~iv~~~~~----~~~~~VLEIG~GtG~lt~~La~~~~~~V~avEid~~m~~~ 89 (240)
+++.+....+. +..-+||=.|||.|.|+..|+..+ -.+-|-|.|--|+-.
T Consensus 134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G-~~~qGNEfSy~Mli~ 187 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLG-FKCQGNEFSYFMLIC 187 (369)
T ss_pred HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhc-ccccccHHHHHHHHH
Confidence 45555554433 235689999999999999999986 577888888877643
No 497
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.88 E-value=84 Score=26.89 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=43.4
Q ss_pred CCCEEEEECC-chhHHH----HHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccc
Q psy17126 51 TGNEVCEVGP-GPGSIT----RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRD 124 (240)
Q Consensus 51 ~~~~VLEIG~-GtG~lt----~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~ 124 (240)
.+.++|=.|+ |++.++ ..+++.+ .+|+.++...+..+.+++.....+ ...++.+|+.+.+ ...++... ...
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~-~~~ 81 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREG-AELAFTYVGDRFKDRITEFAAEFG-SDLVFPCDVASDEQIDALFASL-GQH 81 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCC-CeEEEEccchHHHHHHHHHHHhcC-CcceeeccCCCHHHHHHHHHHH-HHH
Confidence 4678898996 344444 4444544 688877654333333333322222 2346778887643 22222211 112
Q ss_pred ccCCCCceEEEecCC
Q psy17126 125 WSEGLPGIRIIGNLP 139 (240)
Q Consensus 125 ~~~~~~~~~VvsNlP 139 (240)
| +..|.+|.|--
T Consensus 82 ~---g~iD~lvnnAG 93 (260)
T PRK06997 82 W---DGLDGLVHSIG 93 (260)
T ss_pred h---CCCcEEEEccc
Confidence 2 46788888864
No 498
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.83 E-value=78 Score=26.87 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=45.6
Q ss_pred CCCEEEEECCch-hHHH----HHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccc
Q psy17126 51 TGNEVCEVGPGP-GSIT----RSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRD 124 (240)
Q Consensus 51 ~~~~VLEIG~Gt-G~lt----~~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~ 124 (240)
.++++|=.|.++ +.++ ..|++.+ .+|+.+..+.+..+.+++.. ..++.++.+|+.+.. ...++... ...
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G-~~Vi~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~-~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQG-ATVIYTYQNDRMKKSLQKLV---DEEDLLVECDVASDESIERAFATI-KER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCC-CEEEEecCchHHHHHHHhhc---cCceeEEeCCCCCHHHHHHHHHHH-HHH
Confidence 467888888763 3444 4444444 68998877644333333221 246788899987643 22222211 011
Q ss_pred ccCCCCceEEEecCCC
Q psy17126 125 WSEGLPGIRIIGNLPF 140 (240)
Q Consensus 125 ~~~~~~~~~VvsNlPY 140 (240)
+ +..|.+|.|--+
T Consensus 81 ~---g~iD~lv~nAg~ 93 (252)
T PRK06079 81 V---GKIDGIVHAIAY 93 (252)
T ss_pred h---CCCCEEEEcccc
Confidence 1 357888887643
No 499
>PRK07825 short chain dehydrogenase; Provisional
Probab=42.70 E-value=1.1e+02 Score=26.12 Aligned_cols=77 Identities=17% Similarity=0.056 Sum_probs=43.6
Q ss_pred CCEEEEECCchhHHHH----HHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCCeEEEEccccccc-ccccchhhhccccc
Q psy17126 52 GNEVCEVGPGPGSITR----SILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFT-MQNMFSEDRRRDWS 126 (240)
Q Consensus 52 ~~~VLEIG~GtG~lt~----~La~~~~~~V~avEid~~m~~~l~~~~~~~~~~v~vi~~D~~~~~-~~~~~~~~~~~~~~ 126 (240)
+.++|=.|++. .++. .|++++ .+|+.++.+++-++.+.... .++.++.+|+.+.+ +...+... ...|
T Consensus 5 ~~~ilVtGasg-giG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~-~~~~- 76 (273)
T PRK07825 5 GKVVAITGGAR-GIGLATARALAALG-ARVAIGDLDEALAKETAAEL----GLVVGGPLDVTDPASFAAFLDAV-EADL- 76 (273)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh----ccceEEEccCCCHHHHHHHHHHH-HHHc-
Confidence 56788888754 3444 444444 68999988876654443221 25778889987643 11111111 1112
Q ss_pred CCCCceEEEecC
Q psy17126 127 EGLPGIRIIGNL 138 (240)
Q Consensus 127 ~~~~~~~VvsNl 138 (240)
++.|.+|.|.
T Consensus 77 --~~id~li~~a 86 (273)
T PRK07825 77 --GPIDVLVNNA 86 (273)
T ss_pred --CCCCEEEECC
Confidence 3467888775
No 500
>KOG0114|consensus
Probab=42.46 E-value=26 Score=27.00 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHHh
Q psy17126 131 GIRIIGNLPFNVSTPLIIKWIQA 153 (240)
Q Consensus 131 ~~~VvsNlPY~Iss~il~~ll~~ 153 (240)
-..-|.||||.||+.....++-.
T Consensus 19 riLyirNLp~~ITseemydlFGk 41 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGK 41 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhc
Confidence 36789999999999998888764
Done!