RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17126
(240 letters)
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 130 bits (327), Expect = 3e-36
Identities = 41/229 (17%), Positives = 79/229 (34%), Gaps = 28/229 (12%)
Query: 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIV------RNAGTITGNEVCEVGPGPG 63
P+P I+DI KL +L+ P + +KI + +V ++ PG G
Sbjct: 16 PIPGIKDISKLKFF-----YGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVG 70
Query: 64 SITRSILNR-RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF-TMQNMFSED- 120
+ N+ P + L+EK L+ + SP + D + T N+ E+
Sbjct: 71 IQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSP--LQILKRDPYDWSTYSNLIDEER 128
Query: 121 ----RRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLL---- 172
+ + N+ S LI++W+ I + + ++ +
Sbjct: 129 IFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTT 188
Query: 173 -ERACVKPILRPYQ-LSV--QEFGQICLAYRDMCEEMPGLYEYTLEDTP 217
+ +P + SV + F L E+ G +E+
Sbjct: 189 ARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWD 237
Score = 27.6 bits (61), Expect = 4.4
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 163 HKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYR 199
H Q + P L+ EF + +
Sbjct: 295 HGGQQYFNSRITDKDLLKKCPIDLTNDEFIYLTKLFM 331
>3fut_A Dimethyladenosine transferase; methyltransferase,
dimethyltransferase, dual-specific methyltransferase,
16S rRNA methyltransferase; 1.52A {Thermus thermophilus}
PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Length = 271
Score = 127 bits (321), Expect = 6e-36
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 16/142 (11%)
Query: 12 PSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILN 71
S+R +++ + L A K+ QNFL +IV A V EVGPG G++TR++L
Sbjct: 8 QSVRALLERHGLFADKRFGQNFLVSEAHLRRIVEAAR-PFTGPVFEVGPGLGALTRALL- 65
Query: 72 RRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPG 131
A + IEKD R P L+ S PV D + + W E G
Sbjct: 66 EAGAEVTAIEKDLRLRPVLE--ETLSGLPVRLVFQDALLY------------PWEEVPQG 111
Query: 132 IRIIGNLPFNVSTPLIIKWIQA 153
++ NLP++++TPL+ + ++
Sbjct: 112 SLLVANLPYHIATPLVTRLLKT 133
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 117 bits (295), Expect = 4e-32
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 13/142 (9%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
S+ + + A K+ QNFL + + D IV G + E+GPG G++T ++ R
Sbjct: 4 SMSNSRQHQGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIAR 63
Query: 73 ---RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGL 129
+ L +E D + L Q + H GD ++F ++
Sbjct: 64 LATPGSPLHAVELDRD---LIGRLEQRFGELLELHAGDALTFDFGSIARPG-------DE 113
Query: 130 PGIRIIGNLPFNVSTPLIIKWI 151
P +RIIGNLP+N+S+PL+ +
Sbjct: 114 PSLRIIGNLPYNISSPLLFHLM 135
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus}
PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 106 bits (267), Expect = 3e-28
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 15/130 (11%)
Query: 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
+R K Q+ L + KI GN V EVG G G++T+ +L +L +IE
Sbjct: 3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 62
Query: 83 DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
D ++ L + D F + ++++GNLP+NV
Sbjct: 63 DRE---MVENLKSIGDERLEVINEDASKF------------PFCSLGKELKVVGNLPYNV 107
Query: 143 STPLIIKWIQ 152
++ +I +
Sbjct: 108 ASLIIENTVY 117
Score = 27.1 bits (61), Expect = 4.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 171 LLERACVKPILRPYQLSVQEFGQICLAYRDMCE 203
LL+ A + P R QLS+++F ++ D E
Sbjct: 217 LLKEAGINPDARVEQLSLEDFFKLYRLIEDSGE 249
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli} SCOP:
c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 103 bits (259), Expect = 5e-27
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 31 QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL 90
QNFL + + D IV G + E+GPG ++T + R +L +IE D L
Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVG-ERLDQLTVIELDRDLAARL 59
Query: 91 DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKW 150
P + + D M+F + + + +R+ GNLP+N+STPL+
Sbjct: 60 QTHPFLGP-KLTIYQQDAMTFNFGELAEKMGQP--------LRVFGNLPYNISTPLMFHL 110
Query: 151 IQ 152
Sbjct: 111 FS 112
Score = 26.3 bits (59), Expect = 9.2
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 164 KRQLVVSLLERACVKPILRPYQLSVQEFGQI 194
V +L + P +R +SV ++ Q+
Sbjct: 214 GNLFSVEVLTGMGIDPAMRAENISVAQYCQM 244
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 99.6 bits (249), Expect = 3e-25
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 15/140 (10%)
Query: 13 SIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR 72
S + + K+L Q FL + +K V +A + V E+G G G +T + +
Sbjct: 12 SGLVPRGSHMFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELA-K 70
Query: 73 RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGI 132
++ +IE D P + L + + GD + D ++ L
Sbjct: 71 NAKKVYVIEIDKSLEPYANKLKELYN-NIEIIWGDALKV------------DLNK-LDFN 116
Query: 133 RIIGNLPFNVSTPLIIKWIQ 152
+++ NLP+ +S+P+ K I+
Sbjct: 117 KVVANLPYQISSPITFKLIK 136
Score = 26.4 bits (59), Expect = 9.3
Identities = 4/43 (9%), Positives = 15/43 (34%)
Query: 162 KHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEE 204
K + ++ + ++LSV++ + + +
Sbjct: 249 KKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYRFLQN 291
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 98.3 bits (246), Expect = 5e-25
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 14/130 (10%)
Query: 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
+ K+ Q+FL + + KIV + + E+GPG G++T +L L L+E
Sbjct: 1 MPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLL-TECDNLALVEI 59
Query: 83 DPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN 141
D L + + + + D + F ++ ++ +R++GNLP+N
Sbjct: 60 DRDLVAFLQ--KKYNQQKNITIYQNDALQFDFSSVKTDKP----------LRVVGNLPYN 107
Query: 142 VSTPLIIKWI 151
+STPL+
Sbjct: 108 ISTPLLFHLF 117
Score = 26.7 bits (60), Expect = 7.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 164 KRQLVVSLLERACVKPILRPYQLSVQEFGQI 194
K+ + S + P LRP +L+V++F +I
Sbjct: 220 KKLINPSQWPLLEINPQLRPQELTVEDFVKI 250
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus
pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 94.2 bits (235), Expect = 1e-23
Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 17/130 (13%)
Query: 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
+ + SQNFL ++ ++I++ + V E+G G G +T + + ++ IE
Sbjct: 1 MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLA-KISKQVTSIEL 59
Query: 83 DPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFN 141
D + V D++ F + +I+GN+P++
Sbjct: 60 DSHLFNLSS--EKLKLNTRVTLIHQDILQF------------QFPNKQR-YKIVGNIPYH 104
Query: 142 VSTPLIIKWI 151
+ST +I K +
Sbjct: 105 LSTQIIKKVV 114
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 92.2 bits (230), Expect = 7e-23
Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 24 RALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+ SQNF+ DKI+ N + + E+G G G T ++ +R + IE D
Sbjct: 3 EKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELV-QRCNFVTAIEID 61
Query: 84 PRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
+ + + D++ F + + +I GN+P+N+
Sbjct: 62 HKLCKTTE--NKLVDHDNFQVLNKDILQF------------KFPKNQS-YKIFGNIPYNI 106
Query: 143 STPLIIKWIQ 152
ST +I K +
Sbjct: 107 STDIIRKIVF 116
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 90.9 bits (226), Expect = 5e-22
Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 17/135 (12%)
Query: 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLV 78
L Q+ L P + DKI+ A + + V E+G G G++T +L +++
Sbjct: 10 HSSGRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLL-PLAKKVI 68
Query: 79 LIEKDPRFTPCLDMLAQASPCP-VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGN 137
I+ D R + + + GD + + + N
Sbjct: 69 TIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT------------VFPK---FDVCTAN 113
Query: 138 LPFNVSTPLIIKWIQ 152
+P+ +S+PLI K I
Sbjct: 114 IPYKISSPLIFKLIS 128
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 85.5 bits (212), Expect = 4e-20
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 25 ALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP 84
+ + Q+ L P + + I+ A + V EVGPG G++T +L + ++V E DP
Sbjct: 2 SNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLL-EKAKKVVACELDP 60
Query: 85 RFTPCLDMLAQASPCP--VHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
R L Q +P + +GDV+ D + NLP+ +
Sbjct: 61 RLVAELHKRVQGTPVASKLQVLVGDVLKT------------DLPF---FDTCVANLPYQI 105
Query: 143 STPLIIKWIQ 152
S+P + K +
Sbjct: 106 SSPFVFKLLL 115
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 9e-04
Identities = 47/320 (14%), Positives = 79/320 (24%), Gaps = 111/320 (34%)
Query: 9 PPMPSIRDIIKLYKLR--ALKQLSQNFLFEPR-------LTDKIVRNAGTITGNEV-CE- 57
P S D KLR +++ + L L + V+NA + C+
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKI 268
Query: 58 -VGPGPGSITRSILNRRPARLVLIEKDPRFTP---------CLDMLAQASP---CPVH-F 103
+ +T + + L TP LD Q P +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 104 HLG---------------------DVMSFTMQ---NMFSEDRRRDWSEGLPGIRIIGNLP 139
L D ++ ++ N+ R + L + P
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SV-----FP 382
Query: 140 FNVSTP---LIIKWIQAISE------NLLFPKHKRQLVVSLLERACVKPILRPYQLSVQE 190
+ P L + W I N L HK SL+E+ + + +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKL---HKY----SLVEKQPKESTISIPSIY--- 432
Query: 191 FGQICLAYRDMCEEMPGL-------YEYTLEDTPGDIEPEAV--------------AEQE 229
L + E L Y D+ P + E
Sbjct: 433 -----LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 230 GEGDE-----IDF----NKL 240
+DF K+
Sbjct: 488 ERMTLFRMVFLDFRFLEQKI 507
Score = 27.5 bits (60), Expect = 4.4
Identities = 24/179 (13%), Positives = 57/179 (31%), Gaps = 47/179 (26%)
Query: 65 ITRSILNRRPARLVLIEKDP--RFTPCLDMLAQASPCPVHFHLGDVM----SFTMQ---- 114
+ +SIL++ +++ KD L V + +V+ F M
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 115 ---------NMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKR 165
M+ E R R +++ +NVS + + + LL + +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFA------KYNVSRL---QPYLKLRQALLELRPAK 151
Query: 166 QLVV--------SLLERACVKPILRPYQLSVQEFGQI-------CLAYRDMCEEMPGLY 209
+++ + + + Y++ + +I C + + E + L
Sbjct: 152 NVLIDGVLGSGKTWV----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 37.4 bits (87), Expect = 0.002
Identities = 15/110 (13%), Positives = 37/110 (33%), Gaps = 25/110 (22%)
Query: 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLD 91
F+ + + ++ ++G G G ++ ++ + P A L++
Sbjct: 26 PCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSE------K 79
Query: 92 MLAQA-----SPCPVHFHLGD-------------VMSFTMQNMFSEDRRR 123
ML A V + D V + ++ ++ ED++
Sbjct: 80 MLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKE 129
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 37.6 bits (87), Expect = 0.002
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA 96
R+ + I+ G+ + ++G G G + L + + +E P + M QA
Sbjct: 20 IRIVNAIINLLNLPKGSVIADIGAGTGGYSV-ALANQGLFVYAVE------PSIVMRQQA 72
Query: 97 SPCP-VHFHLGDVMS 110
P V + G +
Sbjct: 73 VVHPQVEWFTGYAEN 87
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 36.0 bits (83), Expect = 0.005
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 16/112 (14%)
Query: 15 RDIIKLYKLRA------LKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRS 68
+ L+ A ++ + + I+ + + V E G G G++T
Sbjct: 3 TEFNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNK 62
Query: 69 ILNRRPARLVLIEKDPRFTPCLDMLAQA---SPCPVHFHLGDVMSFTMQNMF 117
+L + IE +M A P GD +SF +
Sbjct: 63 LL-LAGRTVYGIEPSR------EMRMIAKEKLPKEFSITEGDFLSFEVPTSI 107
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A*
1p1c_A* 1p1b_A* 1khh_A*
Length = 236
Score = 36.0 bits (82), Expect = 0.006
Identities = 12/56 (21%), Positives = 15/56 (26%)
Query: 52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGD 107
G V EVG G + +IE + L A V G
Sbjct: 61 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGL 116
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 33.8 bits (77), Expect = 0.035
Identities = 14/84 (16%), Positives = 20/84 (23%), Gaps = 13/84 (15%)
Query: 33 FLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDM 92
+ T E+G G G I L R R + ++ D M
Sbjct: 21 EVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALP-LIARGYRYIALDADA------AM 73
Query: 93 LAQA------SPCPVHFHLGDVMS 110
L V D +
Sbjct: 74 LEVFRQKIAGVDRKVQVVQADARA 97
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.098
Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 44/162 (27%)
Query: 5 ALRLP-----PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGN-EVCEV 58
A +L + +++IK Y + A + F + + + R G GN ++ +
Sbjct: 105 AAKLLQENDTTLVKTKELIKNY-ITARIMAKRPF--DKKSNSALFRAVGE--GNAQLVAI 159
Query: 59 -GPGPGSIT------RSILNR-RPARLVLIEKDPRFTPCLDMLAQASP-CPVHFHLG-DV 108
G G G+ R + LI+ L L + + F G ++
Sbjct: 160 FG-GQGNTDDYFEELRDLYQTYHVLVGDLIK---FSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 109 MSFTMQNMFSEDRRRDW---SEGLPGIRIIGNLPFNVSTPLI 147
+ W P + ++P +S PLI
Sbjct: 216 LE--------------WLENPSNTPDKDYLLSIP--ISCPLI 241
Score = 29.2 bits (65), Expect = 1.5
Identities = 34/206 (16%), Positives = 69/206 (33%), Gaps = 60/206 (29%)
Query: 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKI---VRNAGTITGNEVCEVGPGPGSIT 66
PM SI ++ + + + + + P ++ + N N V GP P S+
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHL---PA-GKQVEISLVNGAK---NLVV-SGP-PQSLY 387
Query: 67 RSILNRR----PA-----RLVLIEKDPRFTPCLDMLAQASPCPVHFH---LGDVMSFTMQ 114
L R P+ R+ E+ +F+ L ASP FH L +
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF--LPVASP----FHSHLLVPASDLINK 441
Query: 115 NMFSEDRRRDWSEGLPGIRIIGNLP-FNVSTPLIIKW--IQAISENLLFPKHKRQLVVSL 171
++ + + + I+I P ++ ++ +S ++ + ++
Sbjct: 442 DLVKNNVSFNAKD----IQI----PVYDTFD-----GSDLRVLSGSIS-ERIVDCIIRLP 487
Query: 172 L--ERACVKP---ILRPYQLSVQEFG 192
+ E IL +FG
Sbjct: 488 VKWETTTQFKATHIL--------DFG 505
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 32.6 bits (74), Expect = 0.10
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 14/81 (17%)
Query: 38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQA 96
L + + G +V E G G G+ T + P A + I+ P + L +A
Sbjct: 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISP------ESLEKA 77
Query: 97 -------SPCPVHFHLGDVMS 110
V F ++ S
Sbjct: 78 RENTEKNGIKNVKFLQANIFS 98
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 31.8 bits (72), Expect = 0.14
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 14/67 (20%)
Query: 52 GNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQA------SPCPVHF 103
+ + G G G + ++ P ++ I+ +LA+A P F
Sbjct: 23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGE------TLLAEARELFRLLPYDSEF 76
Query: 104 HLGDVMS 110
GD
Sbjct: 77 LEGDATE 83
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 30.9 bits (70), Expect = 0.25
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 15/82 (18%)
Query: 37 PRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA 96
P + + I+ G IT ++G GPG+++ ++ + + + D F+ M A
Sbjct: 30 PIIAENIINRFG-ITAGTCIDIGSGPGALSIALAKQSDFSIRAL--D--FSK--HMNEIA 82
Query: 97 S--------PCPVHFHLGDVMS 110
+ GDV +
Sbjct: 83 LKNIADANLNDRIQIVQGDVHN 104
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 31.0 bits (70), Expect = 0.25
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 57 EVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQA--SPCPVHFHLGDVMSFTM 113
++G GPG+ T + +R + I+ D DML +A +F D+ ++
Sbjct: 39 DLGCGPGNSTELLTDRYGVNVITGIDSDD------DMLEKAADRLPNTNFGKADLATWKP 92
Query: 114 QNMF 117
Sbjct: 93 AQKA 96
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 31.2 bits (70), Expect = 0.25
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA----- 96
+ + + + G G G IT+++L + A L+E ML +A
Sbjct: 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVK------HMLEEAKRELA 137
Query: 97 SPCPVHFHLGDVMSFTMQN 115
F L + + T+
Sbjct: 138 GMPVGKFILASMETATLPP 156
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 30.5 bits (68), Expect = 0.43
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 14/82 (17%)
Query: 38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQA 96
L G +G GP +T +L+ R+ ++E +P D+ +
Sbjct: 109 ELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEP------DIAELS 162
Query: 97 S-------PCPVHFHLGDVMSF 111
V+ GD
Sbjct: 163 RKVIEGLGVDGVNVITGDETVI 184
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 30.0 bits (67), Expect = 0.45
Identities = 15/67 (22%), Positives = 24/67 (35%)
Query: 48 GTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGD 107
G I G V ++G G G ++ L ++ +E D L +GD
Sbjct: 46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGD 105
Query: 108 VMSFTMQ 114
V F +
Sbjct: 106 VSEFNSR 112
>3opy_I 6-phosphofructo-1-kinase gamma-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 351
Score = 30.4 bits (68), Expect = 0.50
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKD 83
+E ++ + N G I GN VG G IT +L ++ AR++L+ D
Sbjct: 167 WEDKVKGPALANRGPIRGN----VGAGDRKITFHLLCKKTARMILVGDD 211
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 29.8 bits (67), Expect = 0.64
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 18/72 (25%)
Query: 47 AGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLD----MLAQA----SP 98
+ G + ++G G G R + A VL LD MLA+A
Sbjct: 39 LPEVGGLRIVDLGCGFGWFCRW-AHEHGASYVL---------GLDLSEKMLARARAAGPD 88
Query: 99 CPVHFHLGDVMS 110
+ + D+
Sbjct: 89 TGITYERADLDK 100
>3cjx_A Protein of unknown function with A cupin-like FOL; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE; 2.60A {Ralstonia
eutropha}
Length = 165
Score = 28.1 bits (62), Expect = 1.6
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 92 MLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEG 128
A P+HFH G V +T+ + +
Sbjct: 49 SFAPGLTLPLHFHTGTVHMYTISGCWYYTEYPGQKQT 85
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 28.5 bits (63), Expect = 1.9
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 56 CEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDM----LAQASPCPVHFHLGDVMSF 111
+ G G G IT+ +L + +++ F L L + ++ + F
Sbjct: 84 LDCGAGIGRITKRLLLPLFREVDMVDITEDF---LVQAKTYLGEEGKRVRNYFCCGLQDF 140
Query: 112 T 112
T
Sbjct: 141 T 141
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 28.2 bits (63), Expect = 2.1
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 14/80 (17%)
Query: 38 RLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQAS 97
RLTD+++ +G+ V +VG G G + R R+ I + QA+
Sbjct: 48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRP------QVNQAN 101
Query: 98 --------PCPVHFHLGDVM 109
V F D M
Sbjct: 102 ARATAAGLANRVTFSYADAM 121
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 27.9 bits (62), Expect = 2.7
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 11/63 (17%)
Query: 52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA----SPCPVHFHLGD 107
EV +VG G G T L+R + V + D + M+ + + F GD
Sbjct: 54 EAEVLDVGCGDGYGTY-KLSRTGYKAVGV--D--ISE--VMIQKGKERGEGPDLSFIKGD 106
Query: 108 VMS 110
+ S
Sbjct: 107 LSS 109
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 27.5 bits (61), Expect = 3.0
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCP--VHFHLGD 107
G + ++G G GS++ R + IE + + G
Sbjct: 56 GELLWDIGGGSGSVSVEWC-LAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGT 112
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 27.7 bits (61), Expect = 3.1
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 42 KIVRNAGTITGNEVCEVGPGPGSITRSILNR--RPARLVLIEKDPRFTPCLDMLAQASPC 99
I G ++ E+G G G ++ + ++ + I+ L QA
Sbjct: 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNH 93
Query: 100 PVHFHLGDVMSFTMQNMFSED 120
+ LGD ++ S+D
Sbjct: 94 LLAGPLGDRLTVHFNTNLSDD 114
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 28.1 bits (63), Expect = 3.1
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 47 AGTITGNEVCEVGPGPGSI----TRSILNRRPARLVLIE 81
++ + +G GSI T+ I R P +L +++
Sbjct: 30 QSVVSQSRFLVLGGA-GSIGQAVTKEIFKRNPQKLHVVD 67
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 27.4 bits (61), Expect = 3.5
Identities = 10/59 (16%), Positives = 14/59 (23%), Gaps = 2/59 (3%)
Query: 51 TGNEVCEVGPGPGSITRSILNRRP-ARLVLIEKDPRFTPCLDMLAQASPCP-VHFHLGD 107
+ ++G G GSI L P V E + A
Sbjct: 25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQG 83
>3hf5_A 4-methylmuconolactone methylisomerase; ferredoxin, ferredoxin-like
fold, beta-barrel, biodegradation, ortho- cleavage; HET:
3ML; 1.40A {Pseudomonas reinekei} PDB: 3hds_A* 3hfk_A*
2ifx_A*
Length = 116
Score = 26.6 bits (58), Expect = 3.7
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 180 ILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYT---LEDTPGDIE 221
+++P +S ++F + C+ + M MPGL++Y + P D
Sbjct: 17 LVKPESMSHEQFRKECVVHFQMSAGMPGLHKYEVRLVAGNPTDTH 61
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural
genomi center for structural genomics, JCSG, protein
structure INI PSI-biology; 2.54A {Homo sapiens} PDB:
1no8_A
Length = 107
Score = 26.5 bits (59), Expect = 4.1
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 114 QNMFSEDRRRDWSEGLPGIRI-IGNLPFNVS 143
++F + + G ++ + NL F VS
Sbjct: 13 HDLF-DSGFGGGAGVETGGKLLVSNLDFGVS 42
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 27.3 bits (61), Expect = 4.3
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 175 ACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQEGEGDE 234
AC ++ + EF + L + EE+ GL E + + ++ E DE
Sbjct: 281 ACSPKVIEAFTDLGWEFVKKALEHPLYLEEISGLSVIKQEVE--RLGNDVFEWEDDESDE 338
Query: 235 I 235
I
Sbjct: 339 I 339
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 27.2 bits (60), Expect = 4.5
Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 18/87 (20%)
Query: 30 SQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPC 89
S+ L ++ + V ++G G G +++
Sbjct: 23 SKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVL----------G 72
Query: 90 LD----MLAQA----SPCPVHFHLGDV 108
+D ML +A + V + +
Sbjct: 73 IDLSERMLTEAKRKTTSPVVCYEQKAI 99
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle,
KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 223
Score = 27.0 bits (59), Expect = 4.8
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 148 IKWIQAISENLLFPKHKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPG 207
IKW +N + K +V+LLER + + P + +I + Y + +E
Sbjct: 79 IKWTL---DNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPVE 135
Query: 208 LYEY 211
L+ +
Sbjct: 136 LFSF 139
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 27.2 bits (60), Expect = 5.6
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 37 PRLTDKIVRNAGTIT-GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ 95
P +T K + +T + + ++G G G T + ++ ++ F + A+
Sbjct: 31 PEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNAR 90
Query: 96 AS--PCPVHFHLGDVMS 110
S V +G +
Sbjct: 91 QSGLQNRVTGIVGSMDD 107
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 26.4 bits (58), Expect = 6.8
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 12/81 (14%)
Query: 36 EPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ 95
+P+L + + V + G G SI + IE L +
Sbjct: 8 QPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDL------QLKK 61
Query: 96 A------SPCPVHFHLGDVMS 110
A + ++ GD+
Sbjct: 62 AENFSRENNFKLNISKGDIRK 82
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase
fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A
{Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A*
2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 26.6 bits (58), Expect = 7.3
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 55 VCEVGPGPGSITRSILNRRPARLVLIEKDPRFT-PCLDMLAQA 96
+ +G G G I IL++ A+ + + P + +A+
Sbjct: 56 ILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKY 98
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 26.4 bits (58), Expect = 8.0
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 37 PRLTDKIVRNAGTIT-GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQ 95
P T K V +T ++ ++G G G T + + ++ I+ P F + A
Sbjct: 31 PEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAV 90
Query: 96 ASPCP--VHFHLGDVMS 110
+ C V G + +
Sbjct: 91 KANCADRVKGITGSMDN 107
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.425
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,818,248
Number of extensions: 222274
Number of successful extensions: 536
Number of sequences better than 10.0: 1
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 62
Length of query: 240
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,160,982
Effective search space: 619986318
Effective search space used: 619986318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)