RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17126
(240 letters)
>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 322
Score = 114 bits (285), Expect = 8e-31
Identities = 43/238 (18%), Positives = 79/238 (33%), Gaps = 29/238 (12%)
Query: 10 PMPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAG------TITGNEVCEVGPGPG 63
P+P I+DI KL +L+ P + +KI +V ++ PG G
Sbjct: 1 PIPGIKDISKLKF-----FYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVG 55
Query: 64 SITRSILNR-RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSF-TMQNMFSEDR 121
+ N+ P + L+EK L+ + SP + D + T N+ E+R
Sbjct: 56 IQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSP--LQILKRDPYDWSTYSNLIDEER 113
Query: 122 RR-----DWSEGLPGIRIIGNLPFNVSTPLIIKWIQAISENLLFPKHKRQLVVSLL---- 172
+ N+ S LI++W+ I + + ++ +
Sbjct: 114 IFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTT 173
Query: 173 -ERACVKPILRPYQ-LSV--QEFGQI-CLAYRDMCEEMPGLYEYTLEDTPGDIEPEAV 225
+ +P + SV + F +A D E + E P +
Sbjct: 174 ARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEI 231
>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein
KsgA {Escherichia coli [TaxId: 562]}
Length = 252
Score = 73.0 bits (178), Expect = 4e-16
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 10/122 (8%)
Query: 31 QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL 90
QNFL + + D IV G + E+GPG ++T + R +L +IE D L
Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVG-ERLDQLTVIELDRDLAARL 59
Query: 91 DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKW 150
P + M G P +R+ GNLP+N+STPL+
Sbjct: 60 QTHPFLGPKLTIYQ--------QDAMTFNFGELAEKMGQP-LRVFGNLPYNISTPLMFHL 110
Query: 151 IQ 152
Sbjct: 111 FS 112
Score = 30.3 bits (67), Expect = 0.20
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 164 KRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 200
V +L + P +R +SV ++ Q+ +
Sbjct: 214 GNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAE 250
>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 278
Score = 71.9 bits (175), Expect = 1e-15
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 31 QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL 90
Q+ L P + + I+ A + V EVGPG G++T +L + ++V E DPR L
Sbjct: 1 QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLL-EKAKKVVACELDPRLVAEL 59
Query: 91 DMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKW 150
Q +P + ++ D + NLP+ +S+P + K
Sbjct: 60 HKRVQGTPVASKLQ------VLVGDVLKTDLPFFD-------TCVANLPYQISSPFVFKL 106
>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis,
Ermc' [TaxId: 1423]}
Length = 235
Score = 56.8 bits (136), Expect = 2e-10
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 31 QNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCL 90
QNF+ DKI+ N + + E+G G G T ++ R + IE D +
Sbjct: 1 QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQ-RCNFVTAIEIDHKLCKTT 59
Query: 91 DMLAQASPCPVHFH 104
+ +
Sbjct: 60 ENKLVDHDNFQVLN 73
>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus
pneumoniae, Ermam [TaxId: 1313]}
Length = 245
Score = 56.1 bits (134), Expect = 4e-10
Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 15/129 (11%)
Query: 23 LRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEK 82
+ + SQNFL ++ ++I++ + V E+G G G +T + +
Sbjct: 1 MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELD 60
Query: 83 DPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNV 142
F + L + + F + + +I+GN+P+++
Sbjct: 61 SHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY---------------KIVGNIPYHL 105
Query: 143 STPLIIKWI 151
ST +I K +
Sbjct: 106 STQIIKKVV 114
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 32.6 bits (73), Expect = 0.028
Identities = 17/154 (11%), Positives = 44/154 (28%), Gaps = 23/154 (14%)
Query: 43 IVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVH 102
+++ A + V ++G G G + + + ++ AQ
Sbjct: 8 MIKTAECRAEHRVLDIGAGAGHTALA-FSPYVQECIGVDATKEMVEVASSFAQEKGVENV 66
Query: 103 FHLG-------------DVMSFTMQNMFSEDRRRDWSEGL----PGIRIIGNLPFNVSTP 145
D+++ D R+ E R + + P
Sbjct: 67 RFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDP 126
Query: 146 LIIKWIQAISENLLFPKHKRQL----VVSLLERA 175
++ +++ ++ L P H R+ ++
Sbjct: 127 VLDEFVNHLNR-LRDPSHVRESSLSEWQAMFSAN 159
>d2ifxa1 d.58.4.19 (A:1-108) Hypothetical protein Reut_A1503
{Ralstonia eutropha [TaxId: 106590]}
Length = 108
Score = 28.9 bits (64), Expect = 0.22
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 180 ILRPYQLSVQEFGQICLAYRDMCEEMPGLYEY 211
+++P +S + F CL + +M ++PGL++Y
Sbjct: 8 LVKPAGMSDETFRAECLRHYEMSHDVPGLHKY 39
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 316
Score = 29.8 bits (66), Expect = 0.25
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 1/78 (1%)
Query: 41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDP-RFTPCLDMLAQASPC 99
+ + N V +VG G G + +++ IE + A
Sbjct: 23 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDH 82
Query: 100 PVHFHLGDVMSFTMQNMF 117
V G V +
Sbjct: 83 VVTIIKGKVEEVELPVEK 100
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 29.1 bits (64), Expect = 0.44
Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-C 99
D I +N V +VG G G ++ +++ +++ +D++
Sbjct: 25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLED 84
Query: 100 PVHFHLGDVMSFTMQNMFSEDRRRDW 125
+ G + + + +W
Sbjct: 85 TITLIKGKIEEVHLPVEKVDVIISEW 110
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga
maritima [TaxId: 2336]}
Length = 266
Score = 28.9 bits (64), Expect = 0.47
Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 15/109 (13%)
Query: 11 MPSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSIL 70
+PS+ D I K R Q+ P+ + I G+ + + G G G++ +
Sbjct: 70 IPSLIDEIMNMKRRT--QIVY-----PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLA 122
Query: 71 NR--RPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVMSFTMQNMF 117
++ EK + A + L + ++ ++++
Sbjct: 123 RAVGSSGKVFAYEKRE------EFAKLAESNLTKWGLIERVTIKVRDIS 165
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 28.4 bits (62), Expect = 0.62
Identities = 10/69 (14%), Positives = 17/69 (24%), Gaps = 2/69 (2%)
Query: 52 GNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQA--SPCPVHFHLGDVM 109
G+ V ++G G G ++ + A+ V F D
Sbjct: 25 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY 84
Query: 110 SFTMQNMFS 118
M
Sbjct: 85 GRHMDLGKE 93
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 28.4 bits (62), Expect = 0.79
Identities = 11/84 (13%), Positives = 20/84 (23%)
Query: 35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLA 94
F + R G + ++G G G + + I+ FT A
Sbjct: 17 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRA 76
Query: 95 QASPCPVHFHLGDVMSFTMQNMFS 118
+ H +
Sbjct: 77 EELGVSERVHFIHNDAAGYVANEK 100
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 280
Score = 27.6 bits (60), Expect = 1.4
Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 1/113 (0%)
Query: 19 KLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLV 78
+ + + + + +L I R T + ++ +G G G I IL++ A+
Sbjct: 8 RRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYP 67
Query: 79 LIEKDPRFT-PCLDMLAQASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLP 130
+ + P + +A+ + + F S + + E
Sbjct: 68 GVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 328
Score = 27.1 bits (59), Expect = 1.8
Identities = 8/77 (10%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Query: 41 DKIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASP-C 99
+ I++N V +VG G G ++ ++ ++ +++
Sbjct: 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSD 87
Query: 100 PVHFHLGDVMSFTMQNM 116
+ G + +
Sbjct: 88 KITLLRGKLEDVHLPFP 104
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 26.9 bits (58), Expect = 2.0
Identities = 8/84 (9%), Positives = 20/84 (23%), Gaps = 1/84 (1%)
Query: 42 KIVRNAGTITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPV 101
K+++ A EV +V G G + ++V + + +
Sbjct: 6 KLMQIAALKGNEEVLDVATGGGHVAN-AFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ 64
Query: 102 HFHLGDVMSFTMQNMFSEDRRRDW 125
++
Sbjct: 65 VEYVQGDAEQMPFTDERFHIVTCR 88
>d1pbya2 a.3.1.7 (A:86-165) Quinohemoprotein amine dehydrogenase A
chain, domains 1 and 2 {Paracoccus denitrificans [TaxId:
266]}
Length = 80
Score = 25.2 bits (55), Expect = 2.4
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 101 VHFHLGDVMSFTMQNMFSEDRRRDW 125
V+FHLG + Q + R RDW
Sbjct: 38 VNFHLGQFPTLEYQAL---ARDRDW 59
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 26.9 bits (59), Expect = 2.4
Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 13/112 (11%)
Query: 12 PSIRDIIKLYKLRALKQLSQNFLFEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILN 71
P + D + Q+ P+ +IV G V E G G G++T S+L
Sbjct: 64 PLLVDYVMSMPRGP--QVIY-----PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLR 116
Query: 72 RRP--ARLVLIEKDPRFTPC----LDMLAQASPCPVHFHLGDVMSFTMQNMF 117
+++ E+ + P + D+ + +
Sbjct: 117 AVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGS 168
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 26.6 bits (58), Expect = 2.5
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 43 IVRNAGTITGNEVCEVGPGPGSITRSILNRRP--ARLVLIEKDPRFTPCLDMLAQASPCP 100
I+ G G ++ EVG G G+++ IL L ++E+D L +A
Sbjct: 77 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDED------NLKKAMDNL 130
Query: 101 VHFHLGDVMSFTMQNMF 117
F+ + + ++
Sbjct: 131 SEFYDIGNVRTSRSDIA 147
>d1jmxa2 a.3.1.7 (A:86-162) Quinohemoprotein amine dehydrogenase A
chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Length = 77
Score = 24.8 bits (54), Expect = 3.2
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 101 VHFHLGDVMSFTMQNMFSEDRRRDW 125
V+FHLG S Q R RDW
Sbjct: 38 VNFHLGQWPSLEYQAQ---ARDRDW 59
>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 276
Score = 26.3 bits (57), Expect = 3.2
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 55 VCEVGPGPGSITRSILNRRPARLVLIEKDPRFT-----------PCLDMLAQASPCPVHF 103
V +G G G R +L ++++E D L+ +
Sbjct: 76 VLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKL 135
Query: 104 HLGDVMSF 111
+GD F
Sbjct: 136 TIGDGFEF 143
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia
carotovora [TaxId: 554]}
Length = 225
Score = 25.7 bits (55), Expect = 5.0
Identities = 8/68 (11%), Positives = 15/68 (22%), Gaps = 1/68 (1%)
Query: 50 ITGNEVCEVGPGPGSITRSILNRRPARLVLIEKDPRFTPCLDMLAQASPCPVHFHLGDVM 109
+ E+G G T L + +E + +H D
Sbjct: 19 FRPGNLLELGSFKGDFTS-RLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ 77
Query: 110 SFTMQNMF 117
+
Sbjct: 78 LPRRYDNI 85
>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase
{Chlorobium tepidum [TaxId: 1097]}
Length = 240
Score = 25.5 bits (55), Expect = 6.4
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Query: 96 ASPCPVHFHLGDVMSFTMQNMFSEDRRRDWSEGLPGIRIIGNLPFNVSTPLIIKWIQAIS 155
A+ MS Q E R + +RI P V TP+ K +
Sbjct: 146 AATKAFRHSSIYCMSKFGQRGLVETMRLYARK--CNVRITDVQPGAVYTPMWGKVDDEMQ 203
Query: 156 ENLLFPKHKRQLVVSLLERA 175
++ P+ VV +
Sbjct: 204 ALMMMPEDIAAPVVQAYLQP 223
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 25.2 bits (54), Expect = 8.2
Identities = 9/96 (9%), Positives = 24/96 (25%), Gaps = 11/96 (11%)
Query: 35 FEPRLTDKIVRNAGTITGNEVCEVGPGPGSITRSILNR-RPARLVLIEKDPRFTPCLDML 93
L +++ + ++G G G + + +EK + +
Sbjct: 135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETM 194
Query: 94 AQA----------SPCPVHFHLGDVMSFTMQNMFSE 119
+ GD +S + +
Sbjct: 195 DREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIAN 230
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.425
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 931,708
Number of extensions: 43510
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 28
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.1 bits)