BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17128
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 18 EEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL--NSKEFSVNL 75
E C QL GV A+FGPS + VQSIC AL VPH+++R ++ N F V+L
Sbjct: 59 EASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSL 118
Query: 76 YPSQKLLNAAFKDVIRFLNWTKKLLNAAFKD 106
YP L+ A D+++F W K + + D
Sbjct: 119 YPDFSSLSRAILDLVQFFKW--KTVTVVYDD 147
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 18 EEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL--NSKEFSVNL 75
E C QL GV A+FGPS + VQSIC AL VPH+++R ++ N F V+L
Sbjct: 59 EASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSL 118
Query: 76 YPSQKLLNAAFKDVIRFLNW 95
YP L+ A D+++F W
Sbjct: 119 YPDFSSLSRAILDLVQFFKW 138
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 18 EEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESR-----LDLELNSKEFS 72
E C QL GV A+FGPS VQSIC AL+VPH++ R LD N F
Sbjct: 62 EATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLD---NKDTFY 118
Query: 73 VNLYPSQKLLNAAFKDVIRFLNW 95
VNLYP L+ A D+++ L W
Sbjct: 119 VNLYPDYASLSHAILDLVQSLKW 141
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 11 NVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKE 70
+N L + +S+ + + + + GP + + VQ++ + D+P ++
Sbjct: 109 GINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIP--------QIAYSA 160
Query: 71 FSVNLYPSQKLLNAAFKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEEDN 124
S++L S K L F V+ + L A D+++ NWT V+ V+ E N
Sbjct: 161 TSIDL--SDKTLYKYFLRVVP----SDTLQARAMLDIVKRYNWTYVSAVHTEGN 208
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 11 NVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKE 70
+N L + +++ + + + + GP + + VQ++ + D+P ++
Sbjct: 104 GLNRCLPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIP--------QIAYSA 155
Query: 71 FSVNLYPSQKLLNAAFKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEEDN 124
S++L S K L F V+ + L A D+++ NWT V+ V+ E N
Sbjct: 156 TSIDL--SDKTLYKYFLRVVP----SDTLQARAMLDIVKRYNWTYVSAVHTEGN 203
>pdb|3O21|A Chain A, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|B Chain B, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|C Chain C, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|D Chain D, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3P3W|A Chain A, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|B Chain B, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|C Chain C, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|D Chain D, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
Length = 389
Score = 28.9 bits (63), Expect = 0.82, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 21 SVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQK 80
+ C Q GV A+FG D + + S C AL + + + +F + + P+
Sbjct: 60 NAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFPTDADV-QFVIQMRPA-- 116
Query: 81 LLNAAFKDVIRFLNWTK 97
L A ++ + W K
Sbjct: 117 -LKGAILSLLSYYKWEK 132
>pdb|3OM0|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Crystallographic
Dimer At 1.4 Angstrom Resolution
pdb|3OM1|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3OM1|B Chain B, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3QLU|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLV|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|E Chain E, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|G Chain G, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|I Chain I, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 393
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 18 EEESVMCRQLQNGVQALFGPSDALLGPH-VQSICEALDVPHMESRLD--LELNSKEF-SV 73
E MC+ L GV ++ GPS + V IC ++PH++ + L F SV
Sbjct: 58 ETTDTMCQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEETPRLQYLRFASV 117
Query: 74 NLYPSQKLLNAAFKDVIRFLNW 95
+LYPS + ++ A +++ N+
Sbjct: 118 SLYPSNEDVSLAVSRILKSFNY 139
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 21 SVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQK 80
+ C Q GV A+FG D + S C L V + + + F + + P
Sbjct: 54 AAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD-- 110
Query: 81 LLNAAFKDVIRFLNWTK 97
L A +I + W K
Sbjct: 111 -LKGALLSLIEYYQWDK 126
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 5 PSLVEVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL 64
P + VN++ E C Q GV A+FG + + S C AL V + +
Sbjct: 43 PQIDIVNISDSFEMTYR-FCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPV 101
Query: 65 ELNSKEFSVNLYPSQKLLNAAFKDVIRFLNW 95
+ S +F + L P L A +I W
Sbjct: 102 D-TSNQFVLQLRPE---LQEALISIIDHYKW 128
>pdb|1WYO|A Chain A, Solution Structure Of The Ch Domain Of Human Microtubule-
Associated Protein RpEB FAMILY MEMBER 3
Length = 159
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 77 PSQKLLNAAFKDVIRFLNWTKKLLNAAF 104
P +KL+ F+D F+ W KK +A +
Sbjct: 99 PVEKLVKGKFQDNFEFIQWFKKFFDANY 126
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 21 SVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQK 80
+ C Q GV A+FG D + S C L V + + + F + + P
Sbjct: 49 NAFCSQFSRGVYAIFGFYDKKSVNAITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD-- 105
Query: 81 LLNAAFKDVIRFLNWTK 97
L A +I + W K
Sbjct: 106 -LKGALLSLIEYYQWDK 121
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 21 SVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQK 80
+ C Q GV A+FG D + S C L V + + + F + + P
Sbjct: 51 NAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD-- 107
Query: 81 LLNAAFKDVIRFLNWTK 97
L A +I + W K
Sbjct: 108 -LKGALLSLIEYYQWDK 123
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 21 SVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQK 80
+ C Q GV A+FG D + S C L V + + + F + + P
Sbjct: 51 NAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD-- 107
Query: 81 LLNAAFKDVIRFLNWTK 97
L A +I + W K
Sbjct: 108 -LKGALLSLIEYYQWDK 123
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 21 SVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQK 80
+ C Q GV A+FG D + S C L V + + + F + + P
Sbjct: 51 NAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD-- 107
Query: 81 LLNAAFKDVIRFLNWTK 97
L A +I + W K
Sbjct: 108 -LKGALLSLIEYYQWDK 123
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
Length = 394
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 21 SVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQK 80
+ C Q GV A+FG D + S C L V + + + F + + P
Sbjct: 59 NAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD-- 115
Query: 81 LLNAAFKDVIRFLNWTK 97
L A +I + W K
Sbjct: 116 -LKGALLSLIEYYQWDK 131
>pdb|3CO1|A Chain A, Crystal Structure Of Microtubule Binding Domain Of Human
Eb3
Length = 132
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 77 PSQKLLNAAFKDVIRFLNWTKKLLNAAF 104
P +KL+ F+D F+ W KK +A +
Sbjct: 94 PVEKLVKGKFQDNFEFIQWFKKFFDANY 121
>pdb|4GPA|A Chain A, High Resolution Structure Of The Glua4 N-Terminal Domain
(Ntd)
Length = 389
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 21 SVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQK 80
+ C Q GV A+FG D + S C AL + + E S +F + L PS
Sbjct: 60 NAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGES-QFVLQLRPS-- 116
Query: 81 LLNAAFKDVIRFLNW 95
L A ++ W
Sbjct: 117 -LRGALLSLLDHYEW 130
>pdb|2R8U|A Chain A, Structure Of Fragment Of Human End-Binding Protein 1 (Eb1)
Containing The N-Terminal Domain At 1.35 A Resolution
pdb|2R8U|B Chain B, Structure Of Fragment Of Human End-Binding Protein 1 (Eb1)
Containing The N-Terminal Domain At 1.35 A Resolution
Length = 268
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 64 LELNSKEFSVN-LYPSQKLLNAAFKDVIRFLNWTKKLLNAAF 104
L+ K V+ + P KL+ F+D F+ W KK +A +
Sbjct: 78 LQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANY 119
>pdb|1VKA|A Chain A, Southeast Collaboratory For Structural Genomics:
Hypothetical Human Protein Q15691 N-Terminal Fragment
pdb|1VKA|B Chain B, Southeast Collaboratory For Structural Genomics:
Hypothetical Human Protein Q15691 N-Terminal Fragment
Length = 153
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 64 LELNSKEFSVN-LYPSQKLLNAAFKDVIRFLNWTKKLLNAAF 104
L+ K V+ + P KL+ F+D F+ W KK +A +
Sbjct: 91 LQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANY 132
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 16/95 (16%)
Query: 31 VQALFGPSDALLGPHVQSICEALDVPHME-SRLDLELNSKEFSVNLYPSQKLLNAAFKDV 89
+ + GP + + VQ++ + ++P + S ++L+ K FK
Sbjct: 130 IVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSMDLSDKTL--------------FKYF 175
Query: 90 IRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEEDN 124
+R + + A D+++ NWT V+ V+ E N
Sbjct: 176 MRVVPSDAQQARAMV-DIVKRYNWTYVSAVHTEGN 209
>pdb|2QJZ|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
pdb|2QJZ|B Chain B, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 123
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 77 PSQKLLNAAFKDVIRFLNWTKKLLNAAF 104
P KL+ F+D F+ W KK +A +
Sbjct: 82 PVDKLVKGKFQDNFEFVQWFKKFFDANY 109
>pdb|1PA7|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding
Domain Of Eb1
pdb|1UEG|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding
Domain Of Eb1
Length = 130
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 77 PSQKLLNAAFKDVIRFLNWTKKLLNAAF 104
P KL+ F+D F+ W KK +A +
Sbjct: 92 PVDKLVKGKFQDNFEFVQWFKKFFDANY 119
>pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1)
pdb|4HZK|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 2)
pdb|4HZK|B Chain B, Crystal Structure Of Free Crm1 (crystal Form 2)
Length = 1086
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 70 EFSVNLYPSQKLLNAAFKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYE 121
EFS+ Q++LN+A + L+ A + ++RF NW + ++E
Sbjct: 190 EFSMIFQLCQEILNSATQ---------PSLIKATLETLLRFCNWIPLGYIFE 232
>pdb|2APG|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests
A Mechanism For Regioselective Chlorination
pdb|2AQJ|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests
A Mechanism For Regioselective Chlorination
pdb|2AR8|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests
A Mechanism For Regioselective Chlorination
pdb|2ARD|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests
A Mechanism For Regioselective Chlorination
Length = 538
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 82 LNAAFKDVIRFLNWTK 97
+N AFK I+F+NW K
Sbjct: 74 VNGAFKAAIKFVNWRK 89
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 100 LNAAFKDVIRFLNWTK 115
+N AFK I+F+NW K
Sbjct: 74 VNGAFKAAIKFVNWRK 89
>pdb|2JKC|A Chain A, Crystal Structure Of E346d Of Tryptophan 7-Halogenase
(Prna)
Length = 538
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 82 LNAAFKDVIRFLNWTK 97
+N AFK I+F+NW K
Sbjct: 74 VNGAFKAAIKFVNWRK 89
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 100 LNAAFKDVIRFLNWTK 115
+N AFK I+F+NW K
Sbjct: 74 VNGAFKAAIKFVNWRK 89
>pdb|1V5K|A Chain A, Solution Structure Of The Ch Domain From Mouse Eb-1
Length = 115
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 64 LELNSKEFSVN-LYPSQKLLNAAFKDVIRFLNWTKKLLNAA 103
L+ K V+ + P KL+ F+D F+ W KK ++
Sbjct: 71 LQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDSG 111
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 99 LLNAAFKDVIRFLNWTKVAIVYE 121
L++A + ++RFLNW + ++E
Sbjct: 221 LVHATLETLLRFLNWIPLGYIFE 243
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 99 LLNAAFKDVIRFLNWTKVAIVYE 121
L++A + ++RFLNW + ++E
Sbjct: 223 LVHATLETLLRFLNWIPLGYIFE 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,500,805
Number of Sequences: 62578
Number of extensions: 122087
Number of successful extensions: 409
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 38
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)