Query psy17128
Match_columns 124
No_of_seqs 104 out of 419
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 22:37:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qel_B Glutamate [NMDA] recept 99.7 1E-17 3.4E-22 135.3 10.2 101 4-123 37-146 (364)
2 4gpa_A Glutamate receptor 4; P 99.7 1.9E-17 6.4E-22 129.3 9.5 95 7-124 47-141 (389)
3 3hsy_A Glutamate receptor 2; l 99.6 2.8E-15 9.5E-20 119.4 9.2 91 9-122 40-130 (376)
4 3h6g_A Glutamate receptor, ion 99.6 8.3E-15 2.9E-19 116.4 9.7 97 8-123 50-148 (395)
5 3o21_A Glutamate receptor 3; p 99.5 1.1E-14 3.8E-19 117.2 8.4 87 13-122 53-139 (389)
6 3om0_A Glutamate receptor, ion 99.5 2E-14 6.9E-19 114.4 7.9 91 15-124 56-150 (393)
7 3saj_A Glutamate receptor 1; r 99.5 2E-14 6.9E-19 114.5 7.2 88 12-122 50-137 (384)
8 3qek_A NMDA glutamate receptor 99.5 6.5E-14 2.2E-18 111.1 10.1 95 11-124 46-150 (384)
9 3kg2_A Glutamate receptor 2; I 99.5 1E-13 3.6E-18 119.5 9.6 94 7-123 38-131 (823)
10 1jdp_A NPR-C, atrial natriuret 99.3 4.5E-12 1.5E-16 102.2 8.6 86 21-124 75-165 (441)
11 4f11_A Gamma-aminobutyric acid 99.3 6.9E-12 2.4E-16 100.6 7.1 90 15-123 69-164 (433)
12 2e4u_A Metabotropic glutamate 99.2 9.5E-11 3.3E-15 98.5 11.6 79 28-124 115-197 (555)
13 3sm9_A Mglur3, metabotropic gl 99.2 5.5E-11 1.9E-15 99.0 9.2 77 30-124 116-196 (479)
14 1dp4_A Atrial natriuretic pept 99.2 4.5E-11 1.5E-15 95.5 7.3 82 20-119 66-152 (435)
15 3ks9_A Mglur1, metabotropic gl 99.2 5.8E-11 2E-15 99.2 7.7 79 28-124 126-208 (496)
16 3i45_A Twin-arginine transloca 99.1 1.5E-10 5E-15 91.4 9.2 90 16-123 58-152 (387)
17 3mq4_A Mglur7, metabotropic gl 99.1 1.4E-10 4.8E-15 96.1 7.7 78 29-124 116-197 (481)
18 3h5l_A Putative branched-chain 99.1 4.8E-10 1.6E-14 89.5 9.0 89 17-123 69-174 (419)
19 3td9_A Branched chain amino ac 99.0 1.7E-09 5.6E-14 84.4 10.6 91 15-122 65-158 (366)
20 3ipc_A ABC transporter, substr 99.0 2.1E-09 7.2E-14 83.3 9.9 92 15-123 54-148 (356)
21 3n0w_A ABC branched chain amin 99.0 3.1E-09 1.1E-13 83.6 10.7 95 11-123 53-152 (379)
22 4eyg_A Twin-arginine transloca 99.0 2.4E-09 8.1E-14 83.1 9.5 90 16-123 57-149 (368)
23 3i09_A Periplasmic branched-ch 98.9 6.4E-09 2.2E-13 81.5 10.7 89 17-123 57-150 (375)
24 3sg0_A Extracellular ligand-bi 98.9 1.3E-08 4.5E-13 79.0 11.1 89 17-123 75-169 (386)
25 3lop_A Substrate binding perip 98.9 8.1E-09 2.8E-13 80.6 9.1 89 17-123 59-151 (364)
26 3snr_A Extracellular ligand-bi 98.9 2.1E-08 7.1E-13 77.0 10.5 89 17-123 55-145 (362)
27 3n0x_A Possible substrate bind 98.8 1.2E-08 4.3E-13 80.3 9.4 87 18-123 60-151 (374)
28 3hut_A Putative branched-chain 98.8 2.1E-08 7.1E-13 77.7 10.4 96 10-123 51-149 (358)
29 4f06_A Extracellular ligand-bi 98.8 1.6E-08 5.4E-13 80.0 8.5 86 20-123 61-149 (371)
30 3eaf_A ABC transporter, substr 98.8 2.3E-08 8E-13 79.0 9.4 99 7-123 50-152 (391)
31 1usg_A Leucine-specific bindin 98.8 2.1E-08 7.2E-13 76.9 8.8 97 10-123 49-148 (346)
32 4evq_A Putative ABC transporte 98.7 3.8E-08 1.3E-12 76.5 8.9 92 14-123 65-161 (375)
33 3lkb_A Probable branched-chain 98.7 3.9E-08 1.3E-12 77.4 8.9 91 15-123 59-153 (392)
34 1pea_A Amidase operon; gene re 98.5 5.3E-07 1.8E-11 71.1 10.2 91 15-123 59-150 (385)
35 4gnr_A ABC transporter substra 98.4 3.4E-06 1.1E-10 65.4 11.1 100 7-123 49-153 (353)
36 2h4a_A YRAM (HI1655); perplasm 98.2 2.6E-06 9E-11 68.2 6.8 84 20-123 46-132 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 98.1 6.1E-06 2.1E-10 64.3 6.9 84 22-123 49-134 (327)
38 3brq_A HTH-type transcriptiona 90.7 3.7 0.00013 29.9 10.6 92 10-122 57-148 (296)
39 1dbq_A Purine repressor; trans 88.0 6.1 0.00021 28.7 10.6 92 10-122 43-135 (289)
40 2qu7_A Putative transcriptiona 86.8 3.8 0.00013 30.1 8.2 92 7-122 40-131 (288)
41 1tjy_A Sugar transport protein 86.0 9.3 0.00032 28.7 11.3 88 14-121 44-136 (316)
42 3l49_A ABC sugar (ribose) tran 83.9 10 0.00035 27.5 10.0 93 7-121 38-133 (291)
43 3dbi_A Sugar-binding transcrip 83.7 12 0.00041 28.2 11.0 95 7-122 96-190 (338)
44 2h3h_A Sugar ABC transporter, 81.8 14 0.00047 27.4 12.0 88 15-122 42-132 (313)
45 3uug_A Multiple sugar-binding 80.1 16 0.00054 27.1 11.0 96 7-121 36-139 (330)
46 3ksm_A ABC-type sugar transpor 80.0 14 0.00048 26.4 10.6 90 13-122 41-136 (276)
47 3c3k_A Alanine racemase; struc 79.4 16 0.00054 26.7 11.5 93 7-122 41-133 (285)
48 3rot_A ABC sugar transporter, 79.0 17 0.00057 26.7 11.3 73 15-88 46-121 (297)
49 3o74_A Fructose transport syst 79.0 15 0.00052 26.2 10.6 94 7-122 35-129 (272)
50 3brs_A Periplasmic binding pro 77.9 17 0.00059 26.3 11.0 88 15-122 50-140 (289)
51 3l6u_A ABC-type sugar transpor 77.5 18 0.00061 26.2 10.6 80 6-88 40-121 (293)
52 2x7x_A Sensor protein; transfe 76.1 22 0.00076 26.6 12.4 97 6-122 38-137 (325)
53 2fep_A Catabolite control prot 75.7 21 0.00072 26.1 11.6 94 7-122 49-142 (289)
54 2iks_A DNA-binding transcripti 74.2 23 0.00078 25.8 11.1 91 10-122 56-147 (293)
55 3d02_A Putative LACI-type tran 73.6 23 0.0008 25.7 10.8 87 15-121 46-135 (303)
56 2fn9_A Ribose ABC transporter, 73.6 23 0.00079 25.6 11.1 80 7-88 35-116 (290)
57 3m9w_A D-xylose-binding peripl 73.2 25 0.00086 25.9 11.8 95 7-121 35-131 (313)
58 3clk_A Transcription regulator 72.9 11 0.00037 27.6 6.5 76 23-122 58-134 (290)
59 3d8u_A PURR transcriptional re 71.1 26 0.00088 25.1 9.4 88 12-122 41-129 (275)
60 2h0a_A TTHA0807, transcription 69.7 11 0.00038 27.1 5.9 73 25-122 50-123 (276)
61 3e61_A Putative transcriptiona 69.5 28 0.00097 25.0 8.7 91 7-122 41-131 (277)
62 2o20_A Catabolite control prot 69.2 33 0.0011 25.6 10.9 91 10-122 99-189 (332)
63 2rgy_A Transcriptional regulat 68.8 31 0.0011 25.1 9.9 77 23-122 60-137 (290)
64 2rjo_A Twin-arginine transloca 68.7 34 0.0012 25.5 11.0 95 10-122 41-145 (332)
65 3bbl_A Regulatory protein of L 68.0 32 0.0011 25.0 8.8 77 23-122 57-134 (287)
66 3g1w_A Sugar ABC transporter; 64.9 38 0.0013 24.7 11.2 90 12-121 43-135 (305)
67 3ctp_A Periplasmic binding pro 64.1 43 0.0015 25.0 9.0 89 7-122 93-181 (330)
68 3tb6_A Arabinose metabolism tr 63.9 38 0.0013 24.3 11.6 94 7-122 48-146 (298)
69 3kke_A LACI family transcripti 63.6 41 0.0014 24.7 10.8 90 7-122 48-140 (303)
70 2ioy_A Periplasmic sugar-bindi 63.5 40 0.0014 24.4 12.9 93 10-122 37-132 (283)
71 2hsg_A Glucose-resistance amyl 61.6 47 0.0016 24.7 10.8 90 11-122 97-186 (332)
72 1jx6_A LUXP protein; protein-l 61.4 48 0.0016 24.7 11.8 90 14-122 88-184 (342)
73 8abp_A L-arabinose-binding pro 61.3 44 0.0015 24.2 8.7 55 7-62 35-90 (306)
74 3egc_A Putative ribose operon 60.8 44 0.0015 24.1 10.4 94 6-122 40-134 (291)
75 3k9c_A Transcriptional regulat 57.6 52 0.0018 23.9 10.2 80 20-122 56-135 (289)
76 2qh8_A Uncharacterized protein 57.2 56 0.0019 24.1 9.7 53 6-61 45-97 (302)
77 1qpz_A PURA, protein (purine n 57.0 59 0.002 24.3 11.3 92 10-122 94-186 (340)
78 3gyb_A Transcriptional regulat 56.8 31 0.0011 24.8 6.3 72 25-122 55-127 (280)
79 3k4h_A Putative transcriptiona 55.0 56 0.0019 23.5 10.2 89 11-122 50-140 (292)
80 2vk2_A YTFQ, ABC transporter p 54.8 60 0.002 23.8 10.9 78 10-88 38-118 (306)
81 3jy6_A Transcriptional regulat 54.7 56 0.0019 23.4 12.1 92 7-122 40-132 (276)
82 3gbv_A Putative LACI-family tr 54.6 57 0.0019 23.4 10.9 79 21-120 60-142 (304)
83 3sr0_A Adenylate kinase; phosp 52.5 8.2 0.00028 28.5 2.5 30 31-60 2-31 (206)
84 2fvy_A D-galactose-binding per 51.7 65 0.0022 23.3 11.4 81 7-88 36-121 (309)
85 3umf_A Adenylate kinase; rossm 49.6 8.1 0.00028 29.0 2.1 36 25-60 24-60 (217)
86 3o1i_D Periplasmic protein TOR 44.0 87 0.003 22.5 10.6 80 7-88 38-124 (304)
87 3fdi_A Uncharacterized protein 41.6 21 0.00073 25.8 3.2 33 27-59 4-36 (201)
88 3bil_A Probable LACI-family tr 41.1 1.1E+02 0.0039 23.0 9.3 92 10-122 102-193 (348)
89 1cke_A CK, MSSA, protein (cyti 40.7 21 0.00072 25.2 3.0 31 30-60 6-36 (227)
90 2q5c_A NTRC family transcripti 39.2 46 0.0016 24.2 4.8 49 5-60 118-166 (196)
91 3miz_A Putative transcriptiona 37.6 86 0.0029 22.7 6.1 91 7-122 47-140 (301)
92 3ake_A Cytidylate kinase; CMP 37.5 27 0.00091 24.1 3.1 30 31-60 4-33 (208)
93 2c95_A Adenylate kinase 1; tra 37.1 31 0.0011 23.5 3.4 35 26-60 5-40 (196)
94 1obf_O Glyceraldehyde 3-phosph 36.1 27 0.00093 28.3 3.3 25 94-118 153-177 (335)
95 3h75_A Periplasmic sugar-bindi 35.8 1.3E+02 0.0046 22.3 11.8 81 7-88 37-131 (350)
96 3lft_A Uncharacterized protein 34.8 1.3E+02 0.0045 21.9 8.9 51 7-61 39-90 (295)
97 2b4r_O Glyceraldehyde-3-phosph 33.7 28 0.00097 28.3 3.1 25 94-118 160-184 (345)
98 1ixz_A ATP-dependent metallopr 33.4 38 0.0013 24.5 3.5 32 29-61 50-81 (254)
99 3vaa_A Shikimate kinase, SK; s 33.2 35 0.0012 23.9 3.2 32 30-61 26-57 (199)
100 3tlx_A Adenylate kinase 2; str 33.0 37 0.0013 25.0 3.4 35 27-61 26-61 (243)
101 3hcw_A Maltose operon transcri 32.8 1.4E+02 0.0048 21.6 10.6 81 21-122 58-140 (295)
102 4e22_A Cytidylate kinase; P-lo 31.9 36 0.0012 25.1 3.2 30 30-59 28-57 (252)
103 2ep7_A GAPDH, glyceraldehyde-3 31.7 32 0.0011 27.9 3.1 25 94-118 151-175 (342)
104 3gv0_A Transcriptional regulat 31.6 1.4E+02 0.0049 21.4 9.5 78 22-122 57-136 (288)
105 2g82_O GAPDH, glyceraldehyde-3 31.3 36 0.0012 27.3 3.3 25 94-118 148-172 (331)
106 3nbm_A PTS system, lactose-spe 30.7 34 0.0012 23.0 2.7 30 32-61 56-85 (108)
107 3g85_A Transcriptional regulat 29.5 1.5E+02 0.0053 21.1 6.9 71 27-122 65-136 (289)
108 1cf2_P Protein (glyceraldehyde 29.1 50 0.0017 26.2 3.7 32 90-121 135-167 (337)
109 2yyy_A Glyceraldehyde-3-phosph 28.9 31 0.0011 27.6 2.5 31 88-118 137-167 (343)
110 4dpl_A Malonyl-COA/succinyl-CO 28.4 44 0.0015 26.9 3.3 27 92-118 150-176 (359)
111 4dpk_A Malonyl-COA/succinyl-CO 28.4 44 0.0015 26.9 3.3 27 92-118 150-176 (359)
112 3hs3_A Ribose operon repressor 27.8 1.7E+02 0.0057 20.9 6.6 82 10-122 47-131 (277)
113 1kag_A SKI, shikimate kinase I 27.6 54 0.0019 21.9 3.3 31 30-60 5-35 (173)
114 3v7e_A Ribosome-associated pro 27.3 66 0.0023 20.2 3.5 41 21-61 17-60 (82)
115 1iy2_A ATP-dependent metallopr 27.0 56 0.0019 24.1 3.5 32 29-61 74-105 (278)
116 3hp4_A GDSL-esterase; psychrot 26.5 1.3E+02 0.0046 19.8 5.2 47 16-62 88-145 (185)
117 2pju_A Propionate catabolism o 26.5 82 0.0028 23.7 4.4 48 6-60 131-178 (225)
118 3kb2_A SPBC2 prophage-derived 25.9 54 0.0018 21.6 3.0 30 31-60 3-32 (173)
119 3gmt_A Adenylate kinase; ssgci 25.9 37 0.0012 25.8 2.3 30 31-60 10-39 (230)
120 2h92_A Cytidylate kinase; ross 25.1 68 0.0023 22.4 3.6 31 30-60 4-34 (219)
121 1via_A Shikimate kinase; struc 24.6 54 0.0018 22.2 2.8 31 31-61 6-36 (175)
122 3hws_A ATP-dependent CLP prote 24.5 1.3E+02 0.0046 23.0 5.4 34 29-62 51-84 (363)
123 3dl0_A Adenylate kinase; phosp 24.4 70 0.0024 22.4 3.5 29 32-60 3-31 (216)
124 3r20_A Cytidylate kinase; stru 24.4 49 0.0017 25.0 2.8 31 30-60 10-40 (233)
125 3hja_A GAPDH, glyceraldehyde-3 24.1 53 0.0018 27.0 3.1 26 93-118 172-197 (356)
126 3h5o_A Transcriptional regulat 24.0 2.2E+02 0.0076 21.0 11.6 89 10-122 98-187 (339)
127 3huu_A Transcription regulator 23.9 2.1E+02 0.0071 20.7 10.7 79 21-122 73-153 (305)
128 3cs3_A Sugar-binding transcrip 23.4 2E+02 0.0069 20.4 7.8 58 43-122 70-127 (277)
129 3doc_A Glyceraldehyde 3-phosph 23.3 61 0.0021 26.3 3.3 25 94-118 152-176 (335)
130 1zuh_A Shikimate kinase; alpha 23.3 68 0.0023 21.4 3.1 33 29-61 7-39 (168)
131 2x8a_A Nuclear valosin-contain 23.0 66 0.0023 24.2 3.3 33 29-62 45-77 (274)
132 1zp6_A Hypothetical protein AT 22.9 1.1E+02 0.0036 20.7 4.1 35 27-61 6-41 (191)
133 2bbw_A Adenylate kinase 4, AK4 22.7 61 0.0021 23.4 3.0 31 30-60 28-58 (246)
134 3iij_A Coilin-interacting nucl 22.7 65 0.0022 21.8 3.0 34 28-61 10-43 (180)
135 1jjv_A Dephospho-COA kinase; P 22.6 89 0.0031 21.6 3.8 29 31-60 4-32 (206)
136 1rm4_O Glyceraldehyde 3-phosph 22.6 59 0.002 26.1 3.1 25 94-118 152-176 (337)
137 3trf_A Shikimate kinase, SK; a 22.6 68 0.0023 21.7 3.0 32 30-61 6-37 (185)
138 4iao_A NAD-dependent histone d 22.6 3.6E+02 0.012 23.0 8.1 54 23-79 387-443 (492)
139 3r8s_E 50S ribosomal protein L 22.5 44 0.0015 25.2 2.1 22 102-123 132-153 (201)
140 3v1y_O PP38, glyceraldehyde-3- 22.3 61 0.0021 26.4 3.1 25 94-118 153-177 (337)
141 3exa_A TRNA delta(2)-isopenten 22.3 50 0.0017 26.6 2.6 33 28-60 2-34 (322)
142 1q3t_A Cytidylate kinase; nucl 22.3 60 0.002 23.4 2.8 31 30-60 17-47 (236)
143 2iyv_A Shikimate kinase, SK; t 22.1 72 0.0025 21.6 3.1 31 31-61 4-34 (184)
144 3fb4_A Adenylate kinase; psych 22.0 69 0.0024 22.3 3.1 29 32-60 3-31 (216)
145 4dib_A GAPDH, glyceraldehyde 3 21.6 64 0.0022 26.4 3.1 25 94-118 153-177 (345)
146 1vht_A Dephospho-COA kinase; s 21.5 89 0.003 21.9 3.6 29 31-60 6-34 (218)
147 3lvf_P GAPDH 1, glyceraldehyde 21.4 65 0.0022 26.2 3.1 25 94-118 152-176 (338)
148 2ze6_A Isopentenyl transferase 21.4 68 0.0023 23.7 3.0 31 31-61 3-33 (253)
149 3lw7_A Adenylate kinase relate 21.3 81 0.0028 20.4 3.1 30 31-61 3-32 (179)
150 1ukz_A Uridylate kinase; trans 21.3 80 0.0027 21.7 3.2 31 31-61 17-47 (203)
151 3pym_A GAPDH 3, glyceraldehyde 21.1 66 0.0023 26.1 3.1 25 94-118 149-173 (332)
152 2qt1_A Nicotinamide riboside k 21.1 69 0.0023 22.3 2.9 35 27-61 18-54 (207)
153 3cps_A Glyceraldehyde 3-phosph 21.0 93 0.0032 25.1 4.0 25 94-118 167-191 (354)
154 3lkv_A Uncharacterized conserv 21.0 2.6E+02 0.0089 20.7 8.6 54 5-61 44-97 (302)
155 3cmc_O GAPDH, glyceraldehyde-3 21.0 67 0.0023 25.6 3.1 25 94-118 150-174 (334)
156 1hdg_O Holo-D-glyceraldehyde-3 20.9 68 0.0023 25.6 3.1 25 94-118 150-174 (332)
157 1tev_A UMP-CMP kinase; ploop, 20.6 63 0.0022 21.7 2.5 30 31-60 5-34 (196)
158 2jvw_A Uncharacterized protein 20.5 38 0.0013 22.7 1.3 15 101-115 18-32 (88)
159 3b1j_A Glyceraldehyde 3-phosph 20.1 78 0.0027 25.3 3.3 25 94-118 154-178 (339)
160 3e5r_O PP38, glyceraldehyde-3- 20.1 72 0.0025 25.4 3.1 25 94-118 153-177 (337)
161 3nwj_A ATSK2; P loop, shikimat 20.1 81 0.0028 23.7 3.3 33 29-61 48-80 (250)
162 2hjh_A NAD-dependent histone d 20.0 3.3E+02 0.011 21.6 8.4 54 22-78 248-304 (354)
No 1
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=99.73 E-value=1e-17 Score=135.32 Aligned_cols=101 Identities=12% Similarity=0.147 Sum_probs=85.4
Q ss_pred CCeeEEEecCCchHHHHHHHHHhhcc-CcEEEE-cCCCCCcH--HHHHHhhccCCCceEEeeCCCC--C---CCCceEEE
Q psy17128 4 QPSLVEVNVNTGLEEEESVMCRQLQN-GVQALF-GPSDALLG--PHVQSICEALDVPHMESRLDLE--L---NSKEFSVN 74 (124)
Q Consensus 4 ~~~I~~i~~~~~f~~~~~~~C~ll~~-GV~AI~-GP~s~~~~--~~vqsic~~~~IP~i~~~~~~~--~---~~~~f~vn 74 (124)
+|.++.++..|+|++ .+++|+++.. ||.||+ ||+++.++ ++|+++|+.++||+|++.+..+ . ...+|.++
T Consensus 37 ~~~~~~~~~~dp~~~-~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~R 115 (364)
T 3qel_B 37 RVELVAMNETDPKSI-ITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQ 115 (364)
T ss_dssp EEEEEEECCCSHHHH-HHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEE
T ss_pred eEEEEEecCCCHHHH-HHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEE
Confidence 467899999999998 9999999975 798876 67766544 5699999999999999876422 2 24578899
Q ss_pred eecCHHHHHHHHHhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 75 LYPSQKLLNAAFKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 75 l~P~~~~~~~Ai~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
+.|++..+++|+++ |+++|||++|++||+|+
T Consensus 116 t~psd~~q~~ai~~------------------ll~~fgW~~V~iI~~d~ 146 (364)
T 3qel_B 116 FGPSIEQQASVMLN------------------IMEEYDWYIFSIVTTYF 146 (364)
T ss_dssp SSCCHHHHHHHHHH------------------HHHHTTCCEEEEEEESC
T ss_pred cCCChHHHHHHHHH------------------HHHHCCCeEEEEEEeCC
Confidence 99999999999999 99999999999999974
No 2
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=99.72 E-value=1.9e-17 Score=129.32 Aligned_cols=95 Identities=23% Similarity=0.478 Sum_probs=82.1
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAF 86 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai 86 (124)
++..+..+++.+ ++++|+++++||+||+||.++..+..++++++..+||++++++..+ ...+|.++++|. .++|+
T Consensus 47 ~~~~~~~~~~~~-~~~~~~l~~~~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~~~~~~-~~~~~~~~~~~~---~~~a~ 121 (389)
T 4gpa_A 47 VDNIETANSFAV-TNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTE-GESQFVLQLRPS---LRGAL 121 (389)
T ss_dssp EEECSSCCHHHH-HHHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCS-SCCSSEEECSCC---CHHHH
T ss_pred EecCCCchHHHH-HHHHHHHHhcCCEEEEeCCccHHHHHHHHHHHHhCCCceecccccc-ccccCCccccCC---HHHHH
Confidence 445556788887 9999999999999999999999999999999999999999876543 556788899998 45677
Q ss_pred HhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeecCC
Q psy17128 87 KDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEEDN 124 (124)
Q Consensus 87 ~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d~ 124 (124)
++ ++++|||++|++||++|+
T Consensus 122 ~~------------------l~~~~~w~~vaii~~~d~ 141 (389)
T 4gpa_A 122 LS------------------LLDHYEWNCFVFLYDTDR 141 (389)
T ss_dssp HH------------------HHHHTTCCEEEEEECSTT
T ss_pred HH------------------HHHHcCCcEEEEEEecch
Confidence 77 999999999999999874
No 3
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=99.60 E-value=2.8e-15 Score=119.45 Aligned_cols=91 Identities=24% Similarity=0.516 Sum_probs=79.3
Q ss_pred EEecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHh
Q psy17128 9 EVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKD 88 (124)
Q Consensus 9 ~i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d 88 (124)
..+.+|++++ .+++|+++++||.||+||.++..+..++.+++..+||+|++..+. ....+|.+++.|+ +.+|+++
T Consensus 40 d~~~~d~~~a-~~~~~~li~~~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~~-~~~~~~~~~~~p~---~~~a~~~ 114 (376)
T 3hsy_A 40 NLEVANSFAV-TNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPT-DGTHPFVIQMRPD---LKGALLS 114 (376)
T ss_dssp EECTTCHHHH-HHHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCCC-CSCCTTEEECSCC---CHHHHHH
T ss_pred ecCCCChHHH-HHHHHHHHhcCcEEEECCCchhHHHHHHHHhccCcCceeecCCCC-cccCCceEEeCcc---HHHHHHH
Confidence 3355688887 999999999999999999999999999999999999999987632 3456788999988 7889999
Q ss_pred HHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 89 VIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 89 ~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
++++|||++|++|||+
T Consensus 115 ------------------~~~~~gw~~vaii~d~ 130 (376)
T 3hsy_A 115 ------------------LIEYYQWDKFAYLYDS 130 (376)
T ss_dssp ------------------HHHHTTCCEEEEEECS
T ss_pred ------------------HHHhcCCCEEEEEEeC
Confidence 8899999999999943
No 4
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=99.57 E-value=8.3e-15 Score=116.39 Aligned_cols=97 Identities=38% Similarity=0.713 Sum_probs=83.2
Q ss_pred EEEecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCC-CC-CCCceEEEeecCHHHHHHH
Q psy17128 8 VEVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-EL-NSKEFSVNLYPSQKLLNAA 85 (124)
Q Consensus 8 ~~i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~-~~-~~~~f~vnl~P~~~~~~~A 85 (124)
+.++..|+... .+++|+++++||.||+||.++..+..++.+++..+||+|++.... .. ...+|.+++.|++..+.+|
T Consensus 50 ~~~~~~d~~~~-~~~a~~l~~~~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~r~~~~~~~~~~~ 128 (395)
T 3h6g_A 50 QKINLYDSFEA-SKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRA 128 (395)
T ss_dssp EEEETTCHHHH-HHHHHHHHHHCCSCEECCSSHHHHHHHHHHHHHTTCCEEECSCCCCCTTCCCCSEEEEEECHHHHHHH
T ss_pred eecCCcChHHH-HHHHHHhhhcCcEEEECCCChhHHHHHHHHHhcCCCCeEeeccCcccccccCceEEEecCCHHHHHHH
Confidence 33444788887 889999999999999999999999999999999999999875432 22 3457899999999999999
Q ss_pred HHhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 86 FKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 86 i~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
+++ ++++|||++|+++|+++
T Consensus 129 ~~~------------------~~~~~g~~~v~ii~d~~ 148 (395)
T 3h6g_A 129 ILD------------------LVQFFKWKTVTVVYDDS 148 (395)
T ss_dssp HHH------------------HHHHTTCSEEEEEESST
T ss_pred HHH------------------HHHHCCCeEEEEEEECh
Confidence 999 89999999999999653
No 5
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=99.55 E-value=1.1e-14 Score=117.17 Aligned_cols=87 Identities=22% Similarity=0.502 Sum_probs=76.1
Q ss_pred CCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHh
Q psy17128 13 NTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF 92 (124)
Q Consensus 13 ~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~ 92 (124)
+|++++ .+++|+++++||.||+||.++..+..++.+++..+||+|+++.+ .....+|.++++|+ +.+|+++
T Consensus 53 ~d~~~a-~~~a~~li~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~~-~~~~~~~~~~~~p~---~~~a~~~---- 123 (389)
T 3o21_A 53 SNSFSV-TNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFP-TDADVQFVIQMRPA---LKGAILS---- 123 (389)
T ss_dssp TCHHHH-HHHHHHHHTTTCSCEEECCCTTTHHHHHHHHHHHTCCEEECSCC-CSSCCSSEEECSCC---SHHHHHH----
T ss_pred CChHHH-HHHHHHHHhcCcEEEEeCCChhHHHHHHHHhccCCCceeecCCC-CccCCceEEEEccC---HHHHHHH----
Confidence 366777 89999999999999999999999999999999999999987653 33556788899998 7888888
Q ss_pred hhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 93 LNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 93 ~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
++++|||++|++|||+
T Consensus 124 --------------~~~~~gw~~vaii~d~ 139 (389)
T 3o21_A 124 --------------LLSYYKWEKFVYLYDT 139 (389)
T ss_dssp --------------HHHHHTCCEEEEEECS
T ss_pred --------------HHHhCCCCEEEEEEcC
Confidence 8899999999999954
No 6
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=99.52 E-value=2e-14 Score=114.35 Aligned_cols=91 Identities=23% Similarity=0.448 Sum_probs=75.3
Q ss_pred chHHHHHHHHHhhccCcEEEEcCCCC-CcHHHHHHhhccCCCceEEeeCCCCC-CCCceE--EEeecCHHHHHHHHHhHH
Q psy17128 15 GLEEEESVMCRQLQNGVQALFGPSDA-LLGPHVQSICEALDVPHMESRLDLEL-NSKEFS--VNLYPSQKLLNAAFKDVI 90 (124)
Q Consensus 15 ~f~~~~~~~C~ll~~GV~AI~GP~s~-~~~~~vqsic~~~~IP~i~~~~~~~~-~~~~f~--vnl~P~~~~~~~Ai~d~~ 90 (124)
++.+ .+++|+++++||.|||||.++ .++..++.+++..+||+|++...... ...++. +++.|++..+.+|+++
T Consensus 56 ~~~~-~~~~~~l~~~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~~a~~~~~~~~~~~~~fr~~p~~~~~~~~~~~-- 132 (393)
T 3om0_A 56 QYET-TDTMCQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEETPRLQYLRFASVSLYPSNEDVSLAVSR-- 132 (393)
T ss_dssp HHHH-HHHHHHHGGGCCSCEECCSSCHHHHHHHHHHHHHHTCCEEECSCCCCC----CCSCCEESSCCHHHHHHHHHH--
T ss_pred hhHH-HHHHHHHHhcCcEEEECCCCchhHHHHHHHHHhccCCCeEeccCCcCccccccccceEEecCCHHHHHHHHHH--
Confidence 3554 788999999999999999998 45679999999999999998654321 223334 8999999999999999
Q ss_pred HhhhhHHHHhhHHHHHHHhhcCceEEEEEeecCC
Q psy17128 91 RFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEEDN 124 (124)
Q Consensus 91 ~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d~ 124 (124)
++++|||++|++||++++
T Consensus 133 ----------------~~~~~g~~~vaii~~~~~ 150 (393)
T 3om0_A 133 ----------------ILKSFNYPSASLICAKAE 150 (393)
T ss_dssp ----------------HHHHTTSCCEEEEESSTT
T ss_pred ----------------HHHhCCCcEEEEEEeCch
Confidence 889999999999999874
No 7
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=99.51 E-value=2e-14 Score=114.52 Aligned_cols=88 Identities=25% Similarity=0.470 Sum_probs=76.9
Q ss_pred cCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHH
Q psy17128 12 VNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIR 91 (124)
Q Consensus 12 ~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~ 91 (124)
.+|++++ .+++|+++++||.||+||.++..+..++.+++..+||+|++..+ .....+|.++++|+ +.+|+++
T Consensus 50 ~~d~~~a-~~~~~~l~~~~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~~~-~~~~~~~~~~~~p~---~~~a~~~--- 121 (384)
T 3saj_A 50 ISDSFEM-TYRFCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFP-VDTSNQFVLQLRPE---LQEALIS--- 121 (384)
T ss_dssp TTCHHHH-HHHHHHHHHTTCSCEEECCCHHHHHHHHHHHHHHTCCEEECSCC-CSSCCTTEEECSCC---CHHHHHH---
T ss_pred cCchhhH-HHHHHHHHhcCeEEEECCCCHHHHHHHHHHhccCCCCeEecccc-CcCccCceEEeccc---HHHHHHH---
Confidence 3477876 99999999999999999999999999999999999999998543 33556788999998 7888888
Q ss_pred hhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 92 FLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 92 ~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
++++|||++|++||++
T Consensus 122 ---------------~~~~~g~~~v~ii~d~ 137 (384)
T 3saj_A 122 ---------------IIDHYKWQTFVYIYDA 137 (384)
T ss_dssp ---------------HHHHTTCCEEEEEECS
T ss_pred ---------------HHHHCCCcEEEEEEeC
Confidence 8899999999999955
No 8
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=99.51 E-value=6.5e-14 Score=111.09 Aligned_cols=95 Identities=13% Similarity=0.258 Sum_probs=75.7
Q ss_pred ecCCchHHHHHHHHH-hhccCcEEEEcC-----CCCCcHHHHHHhhccCCCceEEeeCCC-CC---CCCceEEEeecCHH
Q psy17128 11 NVNTGLEEEESVMCR-QLQNGVQALFGP-----SDALLGPHVQSICEALDVPHMESRLDL-EL---NSKEFSVNLYPSQK 80 (124)
Q Consensus 11 ~~~~~f~~~~~~~C~-ll~~GV~AI~GP-----~s~~~~~~vqsic~~~~IP~i~~~~~~-~~---~~~~f~vnl~P~~~ 80 (124)
+..|++++ ++++|+ |+++||.||||| ..+..+..++.+++..+||+|++.... .. ...++.+++.|++.
T Consensus 46 ~~~d~~~a-~~~~~~~Li~~~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~ 124 (384)
T 3qek_A 46 HRPNAIQM-ALSVCEDLISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYS 124 (384)
T ss_dssp CCSSHHHH-HHHHHHHTGGGTEEEEEECC--------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGG
T ss_pred ccCCHHHH-HHHHHHHHHHcCceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChH
Confidence 44566777 888899 688899999994 456678889999999999999875432 11 23367899999999
Q ss_pred HHHHHHHhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeecCC
Q psy17128 81 LLNAAFKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEEDN 124 (124)
Q Consensus 81 ~~~~Ai~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d~ 124 (124)
.+.+|+++ ++++|||++|++||+|++
T Consensus 125 ~~~~a~~~------------------~~~~~gw~~v~ii~~d~~ 150 (384)
T 3qek_A 125 HQALVWFE------------------MMRLFNWNHVILIVSDDH 150 (384)
T ss_dssp GHHHHHHH------------------HHHHTTCCEEEEEEESSH
T ss_pred HHHHHHHH------------------HHHHcCCeEEEEEEEcCc
Confidence 99999999 889999999999999863
No 9
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.48 E-value=1e-13 Score=119.54 Aligned_cols=94 Identities=24% Similarity=0.520 Sum_probs=79.6
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAF 86 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai 86 (124)
+..-..++++.+ .+++|+++++||.||+||.++..+.+++.+++..+||+|++..+ .....+|.++++|+ +++|+
T Consensus 38 ~~D~~~~~~~~a-~~~~~~l~~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~~~-~~~~~~~~~r~~p~---~~~a~ 112 (823)
T 3kg2_A 38 IDNLEVANSFAV-TNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP-TDGTHPFVIQMRPD---LKGAL 112 (823)
T ss_dssp EEEECTTCHHHH-HHHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCC-CSSCCSSEEECSCC---CHHHH
T ss_pred EEEcCCCChHHH-HHHHHHHHhcCcEEEEcCCChhHHHHHHHHhhcCCCceeecccC-CCCCCceEEEeCCC---HHHHH
Confidence 333444577777 89999999999999999999999999999999999999997443 23456789999999 77888
Q ss_pred HhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 87 KDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 87 ~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
++ ++++|||++|++|||++
T Consensus 113 ~~------------------l~~~~gw~~v~ii~d~~ 131 (823)
T 3kg2_A 113 LS------------------LIEYYQWDKFAYLYDSD 131 (823)
T ss_dssp HH------------------HHHHTTCSEEEEEECGG
T ss_pred HH------------------HHHHCCCCEEEEEEeCC
Confidence 88 89999999999999654
No 10
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=99.31 E-value=4.5e-12 Score=102.16 Aligned_cols=86 Identities=14% Similarity=0.298 Sum_probs=72.4
Q ss_pred HHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCC-CC---C-CCceEEEeecCHHHHHHHHHhHHHhhhh
Q psy17128 21 SVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-EL---N-SKEFSVNLYPSQKLLNAAFKDVIRFLNW 95 (124)
Q Consensus 21 ~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~-~~---~-~~~f~vnl~P~~~~~~~Ai~d~~~~~~~ 95 (124)
+.+|+..++||.||+||.++..+..++.+++..+||+|++.... .. . ..++.+++.|++..+.+|+++
T Consensus 75 ~~~~~~~~~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~------- 147 (441)
T 1jdp_A 75 DRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLA------- 147 (441)
T ss_dssp HHHHHTTTCCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHH-------
T ss_pred HHHHhhccCCceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHH-------
Confidence 34555555699999999999999999999999999999876432 22 1 456799999999999999999
Q ss_pred HHHHhhHHHHHHHhhcCceEEEEEeecCC
Q psy17128 96 TKKLLNAAFKDVIRFLNWTKVAIVYEEDN 124 (124)
Q Consensus 96 ~~~~l~~a~~~li~~~~W~~v~ivYe~d~ 124 (124)
++++|||++|++||+|++
T Consensus 148 -----------~~~~~~w~~v~ii~~d~~ 165 (441)
T 1jdp_A 148 -----------LFRHHHWSRAALVYSDDK 165 (441)
T ss_dssp -----------HHHHHTCCEEEEEEECCS
T ss_pred -----------HHHhcCCcEEEEEEEcCC
Confidence 899999999999999864
No 11
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=99.27 E-value=6.9e-12 Score=100.65 Aligned_cols=90 Identities=10% Similarity=0.196 Sum_probs=76.7
Q ss_pred chHHHHHHHHHhhcc--CcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCC-CCC---CCCceEEEeecCHHHHHHHHHh
Q psy17128 15 GLEEEESVMCRQLQN--GVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LEL---NSKEFSVNLYPSQKLLNAAFKD 88 (124)
Q Consensus 15 ~f~~~~~~~C~ll~~--GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~-~~~---~~~~f~vnl~P~~~~~~~Ai~d 88 (124)
+-.+ .+.+++++.+ +|.||+||.++..+..++.+++..+||+|++... +.. ...++.+++.|+...+.+++++
T Consensus 69 ~~~a-~~~a~~li~~~~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~ 147 (433)
T 4f11_A 69 NAKG-LKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILK 147 (433)
T ss_dssp HHHH-HHHHHHHHHHSCCCSEEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHH
T ss_pred HHHH-HHHHHHHHhcCCceEEEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHH
Confidence 3444 7788999974 8999999999999999999999999999987542 222 2347899999999999999999
Q ss_pred HHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 89 VIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 89 ~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
+++++||++|++||+++
T Consensus 148 ------------------~~~~~g~~~v~ii~~~~ 164 (433)
T 4f11_A 148 ------------------LLKHYQWKRVGTLTQDV 164 (433)
T ss_dssp ------------------HHHHTTCCEEEEEEESS
T ss_pred ------------------HHHHcCCcEEEEEEecc
Confidence 88999999999999986
No 12
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=99.21 E-value=9.5e-11 Score=98.49 Aligned_cols=79 Identities=19% Similarity=0.359 Sum_probs=68.4
Q ss_pred ccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCC-CCC---CCCceEEEeecCHHHHHHHHHhHHHhhhhHHHHhhHH
Q psy17128 28 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LEL---NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKKLLNAA 103 (124)
Q Consensus 28 ~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~-~~~---~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~~l~~a 103 (124)
+.+|.||+||.++..+..++.+++..+||+|++... +.. ...++.+++.|++..+.+|+++
T Consensus 115 ~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d~~~~~a~~~--------------- 179 (555)
T 2e4u_A 115 PLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAE--------------- 179 (555)
T ss_dssp CCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHH---------------
T ss_pred CCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCChHHHHHHHHH---------------
Confidence 458999999999999999999999999999987543 222 2346789999999999999999
Q ss_pred HHHHHhhcCceEEEEEeecCC
Q psy17128 104 FKDVIRFLNWTKVAIVYEEDN 124 (124)
Q Consensus 104 ~~~li~~~~W~~v~ivYe~d~ 124 (124)
++++|||++|++||+|++
T Consensus 180 ---ll~~fgw~~V~ii~~d~~ 197 (555)
T 2e4u_A 180 ---ILRFFNWTYVSTVASEGD 197 (555)
T ss_dssp ---HHHHTTCCEEEEEEESST
T ss_pred ---HHHHcCCeEEEEEEeeCh
Confidence 889999999999999874
No 13
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=99.19 E-value=5.5e-11 Score=98.98 Aligned_cols=77 Identities=19% Similarity=0.382 Sum_probs=67.4
Q ss_pred CcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCC-CCC---CCCceEEEeecCHHHHHHHHHhHHHhhhhHHHHhhHHHH
Q psy17128 30 GVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LEL---NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKKLLNAAFK 105 (124)
Q Consensus 30 GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~-~~~---~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~~l~~a~~ 105 (124)
+|.||+||.++..+..++.+++..+||+|++... +.. ...++.+++.|++..+.+|+++
T Consensus 116 ~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~----------------- 178 (479)
T 3sm9_A 116 LIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAE----------------- 178 (479)
T ss_dssp CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHH-----------------
T ss_pred ceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCcHHHHHHHHHH-----------------
Confidence 6999999999999999999999999999997543 222 2356789999999999999999
Q ss_pred HHHhhcCceEEEEEeecCC
Q psy17128 106 DVIRFLNWTKVAIVYEEDN 124 (124)
Q Consensus 106 ~li~~~~W~~v~ivYe~d~ 124 (124)
++++|||++|++||+||+
T Consensus 179 -ll~~fgw~~V~ii~~dd~ 196 (479)
T 3sm9_A 179 -ILRFFNWTYVSTVASEGD 196 (479)
T ss_dssp -HHHHTTCCEEEEEEESSH
T ss_pred -HHHHCCCeEEEEEEecch
Confidence 899999999999999863
No 14
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=99.17 E-value=4.5e-11 Score=95.54 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=69.9
Q ss_pred HHHHHHhh-ccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCC-CCC---CCCceEEEeecCHHHHHHHHHhHHHhhh
Q psy17128 20 ESVMCRQL-QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LEL---NSKEFSVNLYPSQKLLNAAFKDVIRFLN 94 (124)
Q Consensus 20 ~~~~C~ll-~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~-~~~---~~~~f~vnl~P~~~~~~~Ai~d~~~~~~ 94 (124)
...+++++ .++|.||+||.++..+..++.+++..+||+|++... +.. ...++.+++.|++..+.+|+++
T Consensus 66 ~~~a~~~l~~~~v~aviG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~------ 139 (435)
T 1dp4_A 66 PLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTA------ 139 (435)
T ss_dssp HHHHHHHHHHHCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHH------
T ss_pred HHHHHHHHHhcCceEEECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHH------
Confidence 56677777 469999999999999999999999999999987543 222 2357899999999999999999
Q ss_pred hHHHHhhHHHHHHHhhcCceEEEEE
Q psy17128 95 WTKKLLNAAFKDVIRFLNWTKVAIV 119 (124)
Q Consensus 95 ~~~~~l~~a~~~li~~~~W~~v~iv 119 (124)
++++|||++|++|
T Consensus 140 ------------~l~~~~w~~v~ii 152 (435)
T 1dp4_A 140 ------------LHRRLGWEHQALV 152 (435)
T ss_dssp ------------HHHHHTCCSEEEE
T ss_pred ------------HHHHCCCcEEEEE
Confidence 8899999999999
No 15
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=99.16 E-value=5.8e-11 Score=99.23 Aligned_cols=79 Identities=24% Similarity=0.490 Sum_probs=68.4
Q ss_pred ccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCC-CCC---CCCceEEEeecCHHHHHHHHHhHHHhhhhHHHHhhHH
Q psy17128 28 QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LEL---NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKKLLNAA 103 (124)
Q Consensus 28 ~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~-~~~---~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~~l~~a 103 (124)
+.+|.||+||.++..+..++.+++..+||+|++... +.. ...++.+++.|++..+.+|+++
T Consensus 126 ~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~--------------- 190 (496)
T 3ks9_A 126 KKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLD--------------- 190 (496)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHH---------------
T ss_pred CCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCceEEecCChHHHHHHHHH---------------
Confidence 568999999999999999999999999999997543 222 2357799999999999999999
Q ss_pred HHHHHhhcCceEEEEEeecCC
Q psy17128 104 FKDVIRFLNWTKVAIVYEEDN 124 (124)
Q Consensus 104 ~~~li~~~~W~~v~ivYe~d~ 124 (124)
++++|||++|++||+||+
T Consensus 191 ---ll~~fgw~~V~li~~dd~ 208 (496)
T 3ks9_A 191 ---IVKRYNWTYVSAVHTEGN 208 (496)
T ss_dssp ---HHHHTTCCEEEEEEESSH
T ss_pred ---HHHHcCCcEEEEEEeccH
Confidence 889999999999999873
No 16
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.15 E-value=1.5e-10 Score=91.41 Aligned_cols=90 Identities=20% Similarity=0.145 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhhcc-CcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCC-C---CCCCceEEEeecCHHHHHHHHHhHH
Q psy17128 16 LEEEESVMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-E---LNSKEFSVNLYPSQKLLNAAFKDVI 90 (124)
Q Consensus 16 f~~~~~~~C~ll~~-GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~-~---~~~~~f~vnl~P~~~~~~~Ai~d~~ 90 (124)
-+.+.+.+++++++ ||.|||||.++..+..+..++++.+||+|++.... . ....++.+++.|++..+.+++++
T Consensus 58 ~~~~~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~-- 135 (387)
T 3i45_A 58 PGKAVTAAQELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAA-- 135 (387)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcCCEEEECCcchHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHH--
Confidence 33446778889885 99999999999999999999999999999875422 1 12456889999999999999999
Q ss_pred HhhhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 91 RFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 91 ~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
.+..+|||++++||+++
T Consensus 136 ----------------~l~~~g~~~vaii~~~~ 152 (387)
T 3i45_A 136 ----------------EAAKLPITRWATIAPNY 152 (387)
T ss_dssp ----------------HHTTSSCCEEEEECCSS
T ss_pred ----------------HHHHcCCCeEEEEeCCc
Confidence 77889999999999765
No 17
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.11 E-value=1.4e-10 Score=96.09 Aligned_cols=78 Identities=21% Similarity=0.378 Sum_probs=65.2
Q ss_pred cCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCC-CCC---CCCceEEEeecCHHHHHHHHHhHHHhhhhHHHHhhHHH
Q psy17128 29 NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LEL---NSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKKLLNAAF 104 (124)
Q Consensus 29 ~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~-~~~---~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~~l~~a~ 104 (124)
.+|.||+||.++..+..+..+++..+||.|++... +.. ...++.+++.|++..+.+|+++
T Consensus 116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~---------------- 179 (481)
T 3mq4_A 116 EKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVD---------------- 179 (481)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHH----------------
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchHHHHHHHHH----------------
Confidence 57999999999999999999999999999987543 222 2346789999999999999999
Q ss_pred HHHHhhcCceEEEEEeecCC
Q psy17128 105 KDVIRFLNWTKVAIVYEEDN 124 (124)
Q Consensus 105 ~~li~~~~W~~v~ivYe~d~ 124 (124)
++++|||++|++||+||+
T Consensus 180 --ll~~fgw~~V~li~~d~~ 197 (481)
T 3mq4_A 180 --IVKALGWNYVSTLASEGS 197 (481)
T ss_dssp --HHHHHTCCEEEEC---CH
T ss_pred --HHHHCCCeEEEEEEEcch
Confidence 889999999999998863
No 18
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=99.07 E-value=4.8e-10 Score=89.53 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhc-cCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCC--------CCCCceEEEeecCHHHHHHHHH
Q psy17128 17 EEEESVMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE--------LNSKEFSVNLYPSQKLLNAAFK 87 (124)
Q Consensus 17 ~~~~~~~C~ll~-~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~--------~~~~~f~vnl~P~~~~~~~Ai~ 87 (124)
..+.+.+++++. +||.|||||.++..+..+..++++.+||+|++..... ....++.+++.|+...+..+++
T Consensus 69 ~~a~~~a~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~ 148 (419)
T 3h5l_A 69 DVVIQSAQRLIDRDNASALIAGYNLENGTALHDVAADAGVIAMHANTVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFL 148 (419)
T ss_dssp HHHHHHHHHHHHTTCCSEEECSCCSSCSCHHHHHHHHHTCEEEECCCCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCeEEEccccchhHHHhHHHHHHcCCeEEEcCcchhhhhhhhcCcccCceEEEeCCchHHHHHHHH
Confidence 434778899998 7999999999999999999999999999998643221 1234668999999999999999
Q ss_pred hHHHhhhhHHHHhhHHHHHHHhhc--------CceEEEEEeecC
Q psy17128 88 DVIRFLNWTKKLLNAAFKDVIRFL--------NWTKVAIVYEED 123 (124)
Q Consensus 88 d~~~~~~~~~~~l~~a~~~li~~~--------~W~~v~ivYe~d 123 (124)
+ +++++ +|+++++||+++
T Consensus 149 ~------------------~~~~~~~~~~~~~~~~~vail~~~~ 174 (419)
T 3h5l_A 149 K------------------FLKDIEDNGEFSRPNNKIAIITGPG 174 (419)
T ss_dssp H------------------HHHHHHHTTSCCCSSSEEEEEECSS
T ss_pred H------------------HHHHHHhhccccCCCCEEEEEEcCc
Confidence 9 66654 899999999875
No 19
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=99.03 E-value=1.7e-09 Score=84.36 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=73.5
Q ss_pred chHHHHHHHHHhhcc-CcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCC-CC-CCCceEEEeecCHHHHHHHHHhHHH
Q psy17128 15 GLEEEESVMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-EL-NSKEFSVNLYPSQKLLNAAFKDVIR 91 (124)
Q Consensus 15 ~f~~~~~~~C~ll~~-GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~-~~-~~~~f~vnl~P~~~~~~~Ai~d~~~ 91 (124)
+-+.+.+.+.+++++ +|.+|+||.++..+..+..++++.+||+|.+.... .. ...++.+++.|++....++++++
T Consensus 65 ~~~~~~~~~~~l~~~~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-- 142 (366)
T 3td9_A 65 EKTEAANAAARAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQGRKFVSRVCFIDPFQGAAMAVF-- 142 (366)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTTTCSSEEESSCCHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHhccCCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccccCCCCCEEEEeCCcHHHHHHHHHH--
Confidence 334446778889987 59999999999899999999999999999875432 11 33567899999999999999983
Q ss_pred hhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 92 FLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 92 ~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
+++.+|||++++||+.
T Consensus 143 ---------------l~~~~g~~~iaii~~~ 158 (366)
T 3td9_A 143 ---------------AYKNLGAKRVVVFTDV 158 (366)
T ss_dssp ---------------HHHTSCCCEEEEEEET
T ss_pred ---------------HHHhcCCcEEEEEEeC
Confidence 4477999999999974
No 20
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.00 E-value=2.1e-09 Score=83.27 Aligned_cols=92 Identities=10% Similarity=0.072 Sum_probs=74.3
Q ss_pred chHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCC-CC--CCCceEEEeecCHHHHHHHHHhHHH
Q psy17128 15 GLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-EL--NSKEFSVNLYPSQKLLNAAFKDVIR 91 (124)
Q Consensus 15 ~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~-~~--~~~~f~vnl~P~~~~~~~Ai~d~~~ 91 (124)
+-+.+.+.+++++++||.+|+||.++..+..+..++.+.+||+|.+.... .. ...++.+++.|++....++++++
T Consensus 54 ~~~~~~~~~~~l~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 131 (356)
T 3ipc_A 54 DPKQGISVANKFVADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKY-- 131 (356)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHCCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHH--
Confidence 33444677889999999999999998888899999999999999864322 11 23367899999999988888884
Q ss_pred hhhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 92 FLNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 92 ~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
+++.+|||++++||+++
T Consensus 132 ---------------l~~~~g~~~iaii~~~~ 148 (356)
T 3ipc_A 132 ---------------LADHFKDAKVAIIHDKT 148 (356)
T ss_dssp ---------------HHHHCTTCCEEEEECSS
T ss_pred ---------------HHHhcCCCEEEEEeCCC
Confidence 56778999999999864
No 21
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=98.99 E-value=3.1e-09 Score=83.56 Aligned_cols=95 Identities=5% Similarity=0.077 Sum_probs=75.6
Q ss_pred ecCCchHHHHHHHHHhhc-cCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCC-CCC---CCCceEEEeecCHHHHHHH
Q psy17128 11 NVNTGLEEEESVMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LEL---NSKEFSVNLYPSQKLLNAA 85 (124)
Q Consensus 11 ~~~~~f~~~~~~~C~ll~-~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~-~~~---~~~~f~vnl~P~~~~~~~A 85 (124)
+...+-+.+.+.+.+++. +||.||+||.++..+..+..++++.+||+|++... +.. ...++.+++.|++..+.++
T Consensus 53 D~~~~~~~a~~~~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 132 (379)
T 3n0w_A 53 DYQMKTDVALSIAREWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKT 132 (379)
T ss_dssp ECTTCHHHHHHHHHHHHHHSCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHH
Confidence 333333444677888887 89999999999999999999999999999987432 222 2256788999999988899
Q ss_pred HHhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 86 FKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 86 i~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
+++ .+..+|||++++||+++
T Consensus 133 ~~~------------------~l~~~g~~~vaii~~~~ 152 (379)
T 3n0w_A 133 VVQ------------------AQLAKGYKTWFLMLPDA 152 (379)
T ss_dssp HHH------------------HHHHTTCCEEEEEEESS
T ss_pred HHH------------------HHHHcCCcEEEEEeccc
Confidence 988 66778999999999875
No 22
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=98.98 E-value=2.4e-09 Score=83.11 Aligned_cols=90 Identities=10% Similarity=0.042 Sum_probs=73.5
Q ss_pred hHHHHHHHHHhhc-cCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCC-C-CCCceEEEeecCHHHHHHHHHhHHHh
Q psy17128 16 LEEEESVMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE-L-NSKEFSVNLYPSQKLLNAAFKDVIRF 92 (124)
Q Consensus 16 f~~~~~~~C~ll~-~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~-~-~~~~f~vnl~P~~~~~~~Ai~d~~~~ 92 (124)
-+.+.+.+.++++ +||.+|+||.++..+..+..++...+||+|.+..... . ...++.+++.|++....+++++
T Consensus 57 ~~~~~~~~~~li~~~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 132 (368)
T 4eyg_A 57 PDNTKRLAQELIVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITERSPYIVRTSFTLAQSSIIIGD---- 132 (368)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhhccCCCCEEEecCChHHHHHHHHH----
Confidence 3443667788887 7999999999988899999999999999998754321 1 2256789999999988899998
Q ss_pred hhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 93 LNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 93 ~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
.+..+|||++++||+++
T Consensus 133 --------------~l~~~g~~~ia~i~~~~ 149 (368)
T 4eyg_A 133 --------------WAAKNGIKKVATLTSDY 149 (368)
T ss_dssp --------------HHHHTTCCEEEEEEESS
T ss_pred --------------HHHHcCCCEEEEEecCc
Confidence 66778999999999865
No 23
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=98.94 E-value=6.4e-09 Score=81.47 Aligned_cols=89 Identities=8% Similarity=0.036 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhc-cCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCC-CCC---CCCceEEEeecCHHHHHHHHHhHHH
Q psy17128 17 EEEESVMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LEL---NSKEFSVNLYPSQKLLNAAFKDVIR 91 (124)
Q Consensus 17 ~~~~~~~C~ll~-~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~-~~~---~~~~f~vnl~P~~~~~~~Ai~d~~~ 91 (124)
+.+.+.+.++++ +||.+|+||.++..+..+..++++.+||+|.+... +.. ...++.+++.|++....+++++
T Consensus 57 ~~a~~~~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~--- 133 (375)
T 3i09_A 57 DIAASKAREWMDRGGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGS--- 133 (375)
T ss_dssp HHHHHHHHHHHHHSCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHH---
Confidence 444677888887 89999999999999999999999999999987432 111 2346788999999888888888
Q ss_pred hhhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 92 FLNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 92 ~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
.+..+|||++++||+++
T Consensus 134 ---------------~l~~~g~~~vaii~~~~ 150 (375)
T 3i09_A 134 ---------------AVVKQGGKTWFFLTADY 150 (375)
T ss_dssp ---------------HHHHTTCCEEEEEEESS
T ss_pred ---------------HHHHcCCceEEEEeccc
Confidence 66778999999999875
No 24
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=98.90 E-value=1.3e-08 Score=79.01 Aligned_cols=89 Identities=16% Similarity=0.161 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhcc-CcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCC-----CCCCceEEEeecCHHHHHHHHHhHH
Q psy17128 17 EEEESVMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE-----LNSKEFSVNLYPSQKLLNAAFKDVI 90 (124)
Q Consensus 17 ~~~~~~~C~ll~~-GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~-----~~~~~f~vnl~P~~~~~~~Ai~d~~ 90 (124)
+.+.+.+.+++++ +|.+|+||.++..+..+..++.+.+||+|.+....+ ....++.+++.|++....+++++
T Consensus 75 ~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 152 (386)
T 3sg0_A 75 TKAAQNARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGK-- 152 (386)
T ss_dssp HHHHHHHHHHHHTSCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhcCceEEECCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHH--
Confidence 3336678888887 899999999988888899999999999998764321 12356788999999999999999
Q ss_pred HhhhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 91 RFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 91 ~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
.+..+|||++++||+++
T Consensus 153 ----------------~l~~~g~~~ia~i~~~~ 169 (386)
T 3sg0_A 153 ----------------YIAKTGAKKVGYIGFSD 169 (386)
T ss_dssp ----------------HHHHTTCCEEEEEEESS
T ss_pred ----------------HHHhcCCCEEEEEecCc
Confidence 66778999999999875
No 25
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=98.88 E-value=8.1e-09 Score=80.58 Aligned_cols=89 Identities=10% Similarity=0.106 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhcc-CcEEEEcCCCCCcHHHHHH--hhccCCCceEEeeCCCC-CCCCceEEEeecCHHHHHHHHHhHHHh
Q psy17128 17 EEEESVMCRQLQN-GVQALFGPSDALLGPHVQS--ICEALDVPHMESRLDLE-LNSKEFSVNLYPSQKLLNAAFKDVIRF 92 (124)
Q Consensus 17 ~~~~~~~C~ll~~-GV~AI~GP~s~~~~~~vqs--ic~~~~IP~i~~~~~~~-~~~~~f~vnl~P~~~~~~~Ai~d~~~~ 92 (124)
+.+.+.+.+++++ +|.+|+||.++..+..+.. ++...+||+|.+....+ ....++.+++.|++....+++++
T Consensus 59 ~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~---- 134 (364)
T 3lop_A 59 EQTVRNVRDMARVDNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTTDPLVFPIKASYQQEIDKMIT---- 134 (364)
T ss_dssp HHHHHHHHHHHHHSCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGSCTTEECCSCCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhhcCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhccCCcEEEeCCChHHHHHHHHH----
Confidence 3336677888885 9999999999888888899 99999999998754321 22256788999999988888888
Q ss_pred hhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 93 LNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 93 ~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
.+..+|||++++||+++
T Consensus 135 --------------~l~~~g~~~iaii~~~~ 151 (364)
T 3lop_A 135 --------------ALVTIGVTRIGVLYQED 151 (364)
T ss_dssp --------------HHHHTTCCCEEEEEETT
T ss_pred --------------HHHHcCCceEEEEEeCc
Confidence 66689999999999875
No 26
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=98.85 E-value=2.1e-08 Score=77.01 Aligned_cols=89 Identities=11% Similarity=0.129 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhcc-CcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCC-CCCCceEEEeecCHHHHHHHHHhHHHhhh
Q psy17128 17 EEEESVMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE-LNSKEFSVNLYPSQKLLNAAFKDVIRFLN 94 (124)
Q Consensus 17 ~~~~~~~C~ll~~-GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~-~~~~~f~vnl~P~~~~~~~Ai~d~~~~~~ 94 (124)
+.+.+.+.+++++ +|.+|+||.++..+..+..++...+||+|.+...+. ....++.+++.|++....+++++
T Consensus 55 ~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 128 (362)
T 3snr_A 55 TAATTNARRFVTESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPLPITPERAKWSVVMPQPIPIMGKVLYE------ 128 (362)
T ss_dssp HHHHHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCCCTTTTTTEEECSCCHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhccCceEEEcCCCcHHHHHHHHHHHHcCccEEEecCCccccCCCCcEEecCCChHHHHHHHHH------
Confidence 4336678888887 899999999888888889999999999998765421 13346788999999999999999
Q ss_pred hHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 95 WTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 95 ~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
.+..+|||++++||+++
T Consensus 129 ------------~l~~~g~~~ia~i~~~~ 145 (362)
T 3snr_A 129 ------------HMKKNNVKTVGYIGYSD 145 (362)
T ss_dssp ------------HHHHTTCCEEEEEEESS
T ss_pred ------------HHHhcCCCEEEEEecCc
Confidence 66778999999999865
No 27
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=98.85 E-value=1.2e-08 Score=80.32 Aligned_cols=87 Identities=8% Similarity=-0.003 Sum_probs=71.2
Q ss_pred HHHHHHHHhhc-cCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCC-CCC---CCCceEEEeecCHHHHHHHHHhHHHh
Q psy17128 18 EEESVMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LEL---NSKEFSVNLYPSQKLLNAAFKDVIRF 92 (124)
Q Consensus 18 ~~~~~~C~ll~-~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~-~~~---~~~~f~vnl~P~~~~~~~Ai~d~~~~ 92 (124)
.+.+.+++++. .||.||+||.++..+..+..+++..+||+|..... +.. ...++.+++.|++..+..+++.
T Consensus 60 ~a~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~---- 135 (374)
T 3n0x_A 60 LSKAALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAV---- 135 (374)
T ss_dssp HHHHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCceEEEcCCCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHH----
Confidence 33777899997 59999999999999999999999999999975332 221 1247889999998888888887
Q ss_pred hhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 93 LNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 93 ~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
+++.++| ++++||+++
T Consensus 136 --------------~~~~~~~-~v~ii~~~~ 151 (374)
T 3n0x_A 136 --------------AIGKQGV-TIATLAQDY 151 (374)
T ss_dssp --------------HHCCTTE-EEEEEEESS
T ss_pred --------------HHhccCC-EEEEEeCCc
Confidence 7888999 799999875
No 28
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=98.85 E-value=2.1e-08 Score=77.70 Aligned_cols=96 Identities=8% Similarity=0.091 Sum_probs=74.4
Q ss_pred EecCCchHHHHHHHHHhh-ccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCC-CC-CCCceEEEeecCHHHHHHHH
Q psy17128 10 VNVNTGLEEEESVMCRQL-QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-EL-NSKEFSVNLYPSQKLLNAAF 86 (124)
Q Consensus 10 i~~~~~f~~~~~~~C~ll-~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~-~~-~~~~f~vnl~P~~~~~~~Ai 86 (124)
.+...+-+.+.+.+.+++ +++|.+|+||.++..+..+..++...+||+|.+.... .. ...++.+++.|++....+++
T Consensus 51 ~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (358)
T 3hut_A 51 ADSRDDADQARTIARAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKISPWQFRAITTPAFEGPNN 130 (358)
T ss_dssp EECTTCHHHHHHHHHHHHHCTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSCTTEEESSCCGGGHHHHH
T ss_pred ecCCCCHHHHHHHHHHHhccCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCcccccCCCeEEEecCChHHHHHHH
Confidence 333334444466788888 7899999999988888888999999999999874322 11 22377899999999999999
Q ss_pred HhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 87 KDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 87 ~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
++ .+...|||++++||+++
T Consensus 131 ~~------------------~l~~~g~~~ia~i~~~~ 149 (358)
T 3hut_A 131 AA------------------WMIGDGFTSVAVIGVTT 149 (358)
T ss_dssp HH------------------HHHHTTCCEEEEEEESS
T ss_pred HH------------------HHHHcCCCEEEEEecCc
Confidence 99 55555999999999765
No 29
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=98.80 E-value=1.6e-08 Score=80.02 Aligned_cols=86 Identities=16% Similarity=0.062 Sum_probs=72.0
Q ss_pred HHHHHHhhc-cCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCC-CC-CCCceEEEeecCHHHHHHHHHhHHHhhhhH
Q psy17128 20 ESVMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-EL-NSKEFSVNLYPSQKLLNAAFKDVIRFLNWT 96 (124)
Q Consensus 20 ~~~~C~ll~-~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~-~~-~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~ 96 (124)
.+.+=+|+. .||.||+||.++..+..+..++++.+||+|++.... .. ...+|.++..|++..+..++++
T Consensus 61 ~~~a~~Li~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~~fr~~~~~~~~~~~~~~-------- 132 (371)
T 4f06_A 61 KALAQELIVKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEKSPYIVRTSFTMFQNTVPAAK-------- 132 (371)
T ss_dssp HHHHHHHHHTSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHH--------
T ss_pred HHHHHHHHhcCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhcccCCcceecccchhhhhhhhhh--------
Confidence 445566776 599999999999999999999999999999875432 21 3446889999999999999998
Q ss_pred HHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 97 KKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 97 ~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
.++.++|++++++|+++
T Consensus 133 ----------~~~~~g~k~vaii~~~~ 149 (371)
T 4f06_A 133 ----------VAKQKGATKVAIAVSDY 149 (371)
T ss_dssp ----------HHHHTTCCEEEEEEESS
T ss_pred ----------hhhhcCceEEEEEcCCc
Confidence 78999999999999986
No 30
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=98.80 E-value=2.3e-08 Score=79.03 Aligned_cols=99 Identities=12% Similarity=0.092 Sum_probs=73.3
Q ss_pred eEEEecCCc--hHHHHHHHHHhh-ccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHH
Q psy17128 7 LVEVNVNTG--LEEEESVMCRQL-QNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 83 (124)
Q Consensus 7 I~~i~~~~~--f~~~~~~~C~ll-~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~ 83 (124)
|+-+..++. -+.+.+.+.+++ ++||.||+|+ ++..+..+..++++.+||+|.+.........++.+++.|++....
T Consensus 50 l~l~~~D~~~~~~~a~~~~~~li~~~~V~~iiG~-~s~~~~a~~~~~~~~~iP~i~~~~~~~~~~~~~~f~~~~~~~~~~ 128 (391)
T 3eaf_A 50 INYIKRDYAYNPTTAEEYYREFRDRYGVIAIIGW-GTADTEKLSDQVDTDKITYISASYSAKLLVKPFNFYPAPDYSTQA 128 (391)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHTTCCSEEEEC-CHHHHHHHHHHHHHHTCEEEESCCCGGGTTSTTEECSSCCHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEEc-CcHHHHHHHHHHhhcCCeEEecccchhhcCCCcEEEeCCCHHHHH
Confidence 344444443 344356678888 6899999995 666677888899999999998765432224567899999999999
Q ss_pred HHHHhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEee-cC
Q psy17128 84 AAFKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYE-ED 123 (124)
Q Consensus 84 ~Ai~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe-~d 123 (124)
.+++++ +++.+|||++++||+ ++
T Consensus 129 ~~~~~~-----------------l~~~~g~~~iaii~~~~~ 152 (391)
T 3eaf_A 129 CSGLAF-----------------LASEFGQGKLALAYDSKV 152 (391)
T ss_dssp HHHHHH-----------------HHHHHCSEEEEEEECTTC
T ss_pred HHHHHH-----------------HHHhcCCCEEEEEEecCC
Confidence 888883 344579999999998 54
No 31
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=98.79 E-value=2.1e-08 Score=76.91 Aligned_cols=97 Identities=9% Similarity=0.102 Sum_probs=72.9
Q ss_pred EecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCC-CCCC--CCceEEEeecCHHHHHHHH
Q psy17128 10 VNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLD-LELN--SKEFSVNLYPSQKLLNAAF 86 (124)
Q Consensus 10 i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~-~~~~--~~~f~vnl~P~~~~~~~Ai 86 (124)
.+...+-+.+.+.+.++++++|.+|+||.++..+..+..++.+.+||+|.+... +... ..++.+++.|++....+++
T Consensus 49 ~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (346)
T 1usg_A 49 YDDACDPKQAVAVANKIVNDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTA 128 (346)
T ss_dssp EECTTCHHHHHHHHHHHHHTTCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHhCCCCEEEcCCCcHHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHH
Confidence 333333344366778888899999999988777777888999999999987532 1111 2356788999999888888
Q ss_pred HhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 87 KDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 87 ~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
+++ |++.+||+++++||+++
T Consensus 129 ~~~-----------------l~~~~g~~~i~~i~~~~ 148 (346)
T 1usg_A 129 AKY-----------------ILETVKPQRIAIIHDKQ 148 (346)
T ss_dssp HHH-----------------HHHTTCCSSEEEEECSS
T ss_pred HHH-----------------HHHhcCCCeEEEEECCC
Confidence 883 44678999999999864
No 32
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=98.75 E-value=3.8e-08 Score=76.50 Aligned_cols=92 Identities=10% Similarity=0.065 Sum_probs=72.6
Q ss_pred CchHHHHHHHHHhhcc-CcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCC-C---CCCceEEEeecCHHHHHHHHHh
Q psy17128 14 TGLEEEESVMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDLE-L---NSKEFSVNLYPSQKLLNAAFKD 88 (124)
Q Consensus 14 ~~f~~~~~~~C~ll~~-GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~-~---~~~~f~vnl~P~~~~~~~Ai~d 88 (124)
.+-+.+.+.+.+++++ +|.+|+||.++..+..+..++...+||+|.+..... . ...++.+++.|++....+++++
T Consensus 65 ~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (375)
T 4evq_A 65 SAPPKATELTTKLIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGD 144 (375)
T ss_dssp TCHHHHHHHHHCCCCCSCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCceEEEcCCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHH
Confidence 3334435667888875 999999999888888889999999999998753221 1 1256788999999999999988
Q ss_pred HHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 89 VIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 89 ~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
.+..+|||++++||+++
T Consensus 145 ------------------~l~~~g~~~ia~i~~~~ 161 (375)
T 4evq_A 145 ------------------AMIKAGLKKAVTVTWKY 161 (375)
T ss_dssp ------------------HHHHTTCCEEEEEEESS
T ss_pred ------------------HHHHcCCcEEEEEecCc
Confidence 66777999999999875
No 33
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=98.74 E-value=3.9e-08 Score=77.42 Aligned_cols=91 Identities=12% Similarity=0.175 Sum_probs=70.2
Q ss_pred chHHHHHHHHHhhcc-CcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCC---CCCceEEEeecCHHHHHHHHHhHH
Q psy17128 15 GLEEEESVMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDLEL---NSKEFSVNLYPSQKLLNAAFKDVI 90 (124)
Q Consensus 15 ~f~~~~~~~C~ll~~-GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~---~~~~f~vnl~P~~~~~~~Ai~d~~ 90 (124)
+-+.+.+.+.+++++ +|.||+|+ ++..+..+..++...+||+|.+...... ...++.+++.|++....++++++
T Consensus 59 ~~~~~~~~~~~li~~~~V~~iig~-~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~- 136 (392)
T 3lkb_A 59 NNANTQRFFEEAVDRFKIPVFLSY-ATGANLQLKPLIQELRIPTIPASMHIELIDPPNNDYIFLPTTSYSEQVVALLEY- 136 (392)
T ss_dssp CHHHHHHHHHHHHHTTCCSCEEEC-CHHHHHHHHHHHHHHTCCEEESCCCGGGGSSSSCTTBCEEECCHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhhcCcEEEEeC-CcHHHHHHHHHHHhCCceEEecccChhhccCCCCCceEecCCChHHHHHHHHHH-
Confidence 334446778889987 99999995 5566677888999999999987543221 23467889999999999998884
Q ss_pred HhhhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 91 RFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 91 ~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
+++.+|||++++||+++
T Consensus 137 ----------------l~~~~g~~~iaii~~~~ 153 (392)
T 3lkb_A 137 ----------------IAREKKGAKVALVVHPS 153 (392)
T ss_dssp ----------------HHHHCTTCEEEEEECSS
T ss_pred ----------------HHHhCCCCEEEEEEeCC
Confidence 44558999999999875
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=98.54 E-value=5.3e-07 Score=71.07 Aligned_cols=91 Identities=12% Similarity=-0.026 Sum_probs=69.4
Q ss_pred chHHHHHHHHHhhc-cCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHhh
Q psy17128 15 GLEEEESVMCRQLQ-NGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFL 93 (124)
Q Consensus 15 ~f~~~~~~~C~ll~-~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~~ 93 (124)
+-+.+.+.+.++++ ++|.+|+||.++.....+..++...+||+|.+.........++.+++.|++....+++++
T Consensus 59 ~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----- 133 (385)
T 1pea_A 59 DPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAA----- 133 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHHTTCEEEECSCCCCCCCCTTEEECSCCGGGTHHHHHH-----
T ss_pred CHHHHHHHHHHHHhhCCcEEEECCCchHHHHHHHHHHHhcCceEEECCcccCccCCCCEEEecCChHHhHHHHHH-----
Confidence 33443567788886 899999999887667778888999999999875432111234567889998888888888
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
.+...+||++++||+++
T Consensus 134 -------------~l~~~g~~~ia~i~~~~ 150 (385)
T 1pea_A 134 -------------YLIRHYGERVVFIGSDY 150 (385)
T ss_dssp -------------HHHTTTCSEEEEEEESS
T ss_pred -------------HHHHccCcEEEEEeCCC
Confidence 66777899999999863
No 35
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=98.39 E-value=3.4e-06 Score=65.37 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=72.8
Q ss_pred eEEEecCCch--HHHHHHHHHhhcc-CcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCC-CC-CCCceEEEeecCHHH
Q psy17128 7 LVEVNVNTGL--EEEESVMCRQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-EL-NSKEFSVNLYPSQKL 81 (124)
Q Consensus 7 I~~i~~~~~f--~~~~~~~C~ll~~-GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~-~~-~~~~f~vnl~P~~~~ 81 (124)
|+-+..+|.. ..+.+.+-+++.+ +|.+|+||.++..+..+..++++.+||+|++.... .. ...+|.++..|++..
T Consensus 49 ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~f~~~~~~~~ 128 (353)
T 4gnr_A 49 IEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQDYLFIGTFQDSF 128 (353)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTTTCTTEEECSCCHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHhhCCceEEeccccCcccceehhhhhccCcceEeecccccccccCCccccccCCCcHH
Confidence 4444444443 3335667788865 68999999999999999999999999999875432 22 345678899999999
Q ss_pred HHHHHHhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 82 LNAAFKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 82 ~~~Ai~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
+.++++++ +.+..+|++++++++++
T Consensus 129 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~ 153 (353)
T 4gnr_A 129 QGKIISNY-----------------VSEKLNAKKVVLYTDNA 153 (353)
T ss_dssp HHHHHHHH-----------------HHHTSCCSEEEEEEETT
T ss_pred HHHHHHHH-----------------HHHhcCCcEEEEEEcCc
Confidence 99999993 33456666666666653
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=98.20 E-value=2.6e-06 Score=68.17 Aligned_cols=84 Identities=7% Similarity=-0.012 Sum_probs=61.8
Q ss_pred HHHHHHhhccCcEEEEcCCCCCcHHHHHHhh-ccCCCceEEeeCCCCCC--CCceEEEeecCHHHHHHHHHhHHHhhhhH
Q psy17128 20 ESVMCRQLQNGVQALFGPSDALLGPHVQSIC-EALDVPHMESRLDLELN--SKEFSVNLYPSQKLLNAAFKDVIRFLNWT 96 (124)
Q Consensus 20 ~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic-~~~~IP~i~~~~~~~~~--~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~ 96 (124)
...+=++++.||.+|+||..+..+..+..+. ...+||.|++....... ...|.++ .++++..+++++
T Consensus 46 ~~~~~~l~~~~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~~~~~~~~~~~~f~--~~~~~~~~~~a~-------- 115 (325)
T 2h4a_A 46 QDIIAQAKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNSRAIPQLCYYG--LSPEDEAESAAN-------- 115 (325)
T ss_dssp HHHHHHHHHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCSSCCCCTTEEECC--CCHHHHHHHHHH--------
T ss_pred HHHHHHHHHCCCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCCccccCCCCeEEEE--CCHHHHHHHHHH--------
Confidence 4445556678999999999999888888888 77899999876533221 2334444 445556788888
Q ss_pred HHHhhHHHHHHHhhcCceEEEEEeecC
Q psy17128 97 KKLLNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 97 ~~~l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
.+...|.|+++++|.++
T Consensus 116 ----------~a~~~g~k~vail~~~~ 132 (325)
T 2h4a_A 116 ----------KMWNDGVRNPLVAMPQN 132 (325)
T ss_dssp ----------HHHHTTCCSCEEEEESS
T ss_pred ----------HHHHcCCCeEEEEEcCC
Confidence 55567999999999875
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=98.10 E-value=6.1e-06 Score=64.27 Aligned_cols=84 Identities=8% Similarity=-0.056 Sum_probs=61.2
Q ss_pred HHHHhh-ccCcEEEEcCCCCCcHHH-HHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHhhhhHHHH
Q psy17128 22 VMCRQL-QNGVQALFGPSDALLGPH-VQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKKL 99 (124)
Q Consensus 22 ~~C~ll-~~GV~AI~GP~s~~~~~~-vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~~ 99 (124)
++-+++ +.||.+|+||..+..+.. +..+.+...+|.+...........++.+++.++++.+.+++++
T Consensus 49 aa~~~~~~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~a~----------- 117 (327)
T 3ckm_A 49 DIIAQAKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNSRAIPQLCYYGLSPEDEAESAAN----------- 117 (327)
T ss_dssp HHHHHHHHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTTCCCCTTEEECCCCHHHHHHHHHH-----------
T ss_pred HHHHHHHHcCCeEEEEccccccchhhHHHHHhccCceEeccCcCcccccCCCeEEEecChHHHHHHHHH-----------
Confidence 333444 579999999988665554 4556666778877654433333345677888999999999999
Q ss_pred hhHHHHHHHhhcCceEEEEEeecC
Q psy17128 100 LNAAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 100 l~~a~~~li~~~~W~~v~ivYe~d 123 (124)
.+...|+|+++++|+++
T Consensus 118 -------~~~~~g~k~~~ii~~~~ 134 (327)
T 3ckm_A 118 -------KMWNDGVRNPLVAMPQN 134 (327)
T ss_dssp -------HHHHTTCCSCEEEEESS
T ss_pred -------HHHhcCCeeEEEEecCC
Confidence 66677999999999986
No 38
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=90.69 E-value=3.7 Score=29.89 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=51.0
Q ss_pred EecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhH
Q psy17128 10 VNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDV 89 (124)
Q Consensus 10 i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~ 89 (124)
...+++-+...+.+-.++++++-+|+..........++.+.+..+||+|.+...... ..+ -.+.+++....+..++.
T Consensus 57 ~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~--~~~-~~V~~d~~~~~~~a~~~ 133 (296)
T 3brq_A 57 ADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRK--NSS-HSVWCDHKQTSFNAVAE 133 (296)
T ss_dssp ECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHHHTCSSCEEEESCCCSS--SGG-GEECCCHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEccccCC--CCC-CEEEEchHHHHHHHHHH
Confidence 333444444233444555678888775333223455665433279999988653321 111 13456666555555552
Q ss_pred HHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 90 IRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 90 ~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
|++ .|.++++++..+
T Consensus 134 -----------------l~~-~G~~~I~~i~~~ 148 (296)
T 3brq_A 134 -----------------LIN-AGHQEIAFLTGS 148 (296)
T ss_dssp -----------------HHH-TTCCSEEEECCC
T ss_pred -----------------HHH-CCCceEEEEcCC
Confidence 333 488999988754
No 39
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=88.01 E-value=6.1 Score=28.74 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=50.7
Q ss_pred EecCCchHHHHHHHHHhhccCcEEEEc-CCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHh
Q psy17128 10 VNVNTGLEEEESVMCRQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKD 88 (124)
Q Consensus 10 i~~~~~f~~~~~~~C~ll~~GV~AI~G-P~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d 88 (124)
....++-+...+.+-.++++++-+|+. |.+.. ...+..+.+..+||+|.+...... ..+.-.+.+++....+..++
T Consensus 43 ~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~~~~~iPvV~~~~~~~~--~~~~~~V~~d~~~~~~~~~~ 119 (289)
T 1dbq_A 43 GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWGEAK--ADFTDAVIDNAFEGGYMAGR 119 (289)
T ss_dssp EECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC-HHHHHHHHHTTTSCEEEEECSSCC--SSSCEEEEECHHHHHHHHHH
T ss_pred EcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC-HHHHHHHHhccCCCEEEEccCCCc--cCcCCEEEeCcHHHHHHHHH
Confidence 344444444233344455678877764 33322 233443333379999988654321 12222455776666666666
Q ss_pred HHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 89 VIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 89 ~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
. |+ ..|-+++.+++.+
T Consensus 120 ~-----------------L~-~~G~~~i~~i~~~ 135 (289)
T 1dbq_A 120 Y-----------------LI-ERGHREIGVIPGP 135 (289)
T ss_dssp H-----------------HH-HTTCCSEEEECCC
T ss_pred H-----------------HH-HCCCCeEEEEecC
Confidence 2 33 3488999988754
No 40
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=86.85 E-value=3.8 Score=30.05 Aligned_cols=92 Identities=10% Similarity=0.088 Sum_probs=50.7
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAF 86 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai 86 (124)
+.....+++-+...+.+-.++++++-+|+..........++.+ .+||+|.+....... .+ -.+.+++....+..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l---~~iPvV~~~~~~~~~--~~-~~V~~d~~~~g~~a 113 (288)
T 2qu7_A 40 VAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSKFQMKREW---LKIPIMTLDRELEST--SL-PSITVDNEEAAYIA 113 (288)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSCCCCCGGG---GGSCEEEESCCCSSC--CC-CEEEECHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCChHHHHHh---cCCCEEEEecccCCC--CC-CEEEECcHHHHHHH
Confidence 3334444444442333444557888888754332222344444 789999886543211 11 23456666666666
Q ss_pred HhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 87 KDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 87 ~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
++. |++ .|-++++++...
T Consensus 114 ~~~-----------------L~~-~G~~~I~~i~~~ 131 (288)
T 2qu7_A 114 TKR-----------------VLE-STCKEVGLLLAN 131 (288)
T ss_dssp HHH-----------------HHT-SSCCCEEEEECC
T ss_pred HHH-----------------HHH-cCCCcEEEEecC
Confidence 662 333 588999988754
No 41
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=85.96 E-value=9.3 Score=28.73 Aligned_cols=88 Identities=13% Similarity=0.158 Sum_probs=51.2
Q ss_pred CchHHHHHHHHHhhccCcEEEE-cCCCCCc-HHHHHHhhccCCCceEEeeCCCCCCCCceEEEe-ecCHHHHHHHHHhHH
Q psy17128 14 TGLEEEESVMCRQLQNGVQALF-GPSDALL-GPHVQSICEALDVPHMESRLDLELNSKEFSVNL-YPSQKLLNAAFKDVI 90 (124)
Q Consensus 14 ~~f~~~~~~~C~ll~~GV~AI~-GP~s~~~-~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl-~P~~~~~~~Ai~d~~ 90 (124)
++-+...+.+-+++++||-+|+ .|.+... ...++. +...+||+|.+.......... ... ..++....+..++.
T Consensus 44 ~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~-a~~~gipvV~~d~~~~~~~~~--~~v~~~D~~~~g~~~~~~- 119 (316)
T 1tjy_A 44 PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKR-AMQRGVKILTWDSDTKPECRS--YYINQGTPKQLGSMLVEM- 119 (316)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHH-HHHTTCEEEEESSCCCGGGCS--EEEESCCHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH-HHHCcCEEEEecCCCCCCCce--EEEecCCHHHHHHHHHHH-
Confidence 3344423445566788887754 6766544 445544 667899999886543211111 233 56766666666663
Q ss_pred HhhhhHHHHhhHHHHHHHhhc--CceEEEEEee
Q psy17128 91 RFLNWTKKLLNAAFKDVIRFL--NWTKVAIVYE 121 (124)
Q Consensus 91 ~~~~~~~~~l~~a~~~li~~~--~W~~v~ivYe 121 (124)
|++.+ |-++++++..
T Consensus 120 ----------------L~~~~~~g~~~i~~i~g 136 (316)
T 1tjy_A 120 ----------------AAHQVDKEKAKVAFFYS 136 (316)
T ss_dssp ----------------HHHHHCSSSEEEEEEES
T ss_pred ----------------HHHHcCCCCCEEEEEEc
Confidence 44443 4778888764
No 42
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=83.87 E-value=10 Score=27.51 Aligned_cols=93 Identities=10% Similarity=0.075 Sum_probs=53.9
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEE-cCCCC-CcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALF-GPSDA-LLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNA 84 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~-GP~s~-~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~ 84 (124)
+.....+.+-+...+.+-.++++|+-+|+ .|.+. .....++ .+...+||+|.+....+ . . .-.+..++....+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~-~~~~~~iPvV~~~~~~~-~--~-~~~V~~D~~~~g~ 112 (291)
T 3l49_A 38 AIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQ-KINDAGIPLFTVDTATP-H--A-INNTTSNNYSIGA 112 (291)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHH-HHHHTTCCEEEESCCCT-T--C-SEEEEECHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH-HHHHCCCcEEEecCCCC-C--c-CceEecChHHHHH
Confidence 34444455555424444555677877766 56553 3334444 46667999998865432 1 1 1245567666666
Q ss_pred HHHhHHHhhhhHHHHhhHHHHHHHhh-cCceEEEEEee
Q psy17128 85 AFKDVIRFLNWTKKLLNAAFKDVIRF-LNWTKVAIVYE 121 (124)
Q Consensus 85 Ai~d~~~~~~~~~~~l~~a~~~li~~-~~W~~v~ivYe 121 (124)
..++. |++. .|=++++++..
T Consensus 113 ~~~~~-----------------l~~~~~g~~~i~~i~~ 133 (291)
T 3l49_A 113 ELALQ-----------------MVADLGGKGNVLVFNG 133 (291)
T ss_dssp HHHHH-----------------HHHHHTTCEEEEEECS
T ss_pred HHHHH-----------------HHHHcCCCceEEEEeC
Confidence 66652 3443 67789988864
No 43
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=83.71 E-value=12 Score=28.16 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=53.0
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAF 86 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai 86 (124)
+.....+++-+...+.+-.++++++-+|+-.........+.......+||++.+.......... ....++..-.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~---~V~~D~~~~~~~a 172 (338)
T 3dbi_A 96 LLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSH---SVWCDHKQTSFNA 172 (338)
T ss_dssp EEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSSSGGG---EECBCHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCCCCCC---EEEEChHHHHHHH
Confidence 3334444455542333444456787777643333334556777888899999887543321111 2455655555444
Q ss_pred HhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 87 KDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 87 ~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
++ -+...|-++++++...
T Consensus 173 ~~------------------~L~~~G~~~I~~i~~~ 190 (338)
T 3dbi_A 173 VA------------------ELINAGHQEIAFLTGS 190 (338)
T ss_dssp HH------------------HHHHTTCCSEEEECCC
T ss_pred HH------------------HHHHCCCCEEEEEeCC
Confidence 44 2233588888888643
No 44
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=81.78 E-value=14 Score=27.44 Aligned_cols=88 Identities=15% Similarity=0.163 Sum_probs=50.5
Q ss_pred chHHHHHHHHHhhccCcEEEE-cCCCCCc-HHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHh
Q psy17128 15 GLEEEESVMCRQLQNGVQALF-GPSDALL-GPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF 92 (124)
Q Consensus 15 ~f~~~~~~~C~ll~~GV~AI~-GP~s~~~-~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~ 92 (124)
+-+...+.+-.++++++-+|+ .|.+... ...++. +...+||+|.+......... .-.+.+++....+..++.
T Consensus 42 ~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~~~--~~~V~~d~~~~g~~a~~~--- 115 (313)
T 2h3h_A 42 DINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKK-ALEMGIPVVTLDTDSPDSGR--YVYIGTDNYQAGYTAGLI--- 115 (313)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHH-HHHTTCCEEEESSCCTTSCC--SCEEECCHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHH-HHHCCCeEEEeCCCCCCcce--eEEECcCHHHHHHHHHHH---
Confidence 344423445555678887766 4555433 345554 45689999988654321111 123457766666666662
Q ss_pred hhhHHHHhhHHHHHHHhhc-CceEEEEEeec
Q psy17128 93 LNWTKKLLNAAFKDVIRFL-NWTKVAIVYEE 122 (124)
Q Consensus 93 ~~~~~~~l~~a~~~li~~~-~W~~v~ivYe~ 122 (124)
|++.+ |-+++++++..
T Consensus 116 --------------L~~~~~G~~~I~~i~~~ 132 (313)
T 2h3h_A 116 --------------MKELLGGKGKVVIGTGS 132 (313)
T ss_dssp --------------HHHHHTSCSEEEEEESC
T ss_pred --------------HHHHcCCCCEEEEEECC
Confidence 34432 78899988754
No 45
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=80.14 E-value=16 Score=27.10 Aligned_cols=96 Identities=8% Similarity=-0.012 Sum_probs=54.1
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEE-cCCCCC-cHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALF-GPSDAL-LGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNA 84 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~-GP~s~~-~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~ 84 (124)
+.....+.+.+...+.+-.++++|+-+|+ .|.+.. ....++. +...+||+|.+...... .......+..++....+
T Consensus 36 ~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~-~~~~giPvV~~~~~~~~-~~~~~~~V~~D~~~~g~ 113 (330)
T 3uug_A 36 TDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQ-AGEQGIKVIAYDRLIRN-SGDVSYYATFDNFQVGV 113 (330)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHH-HHHTTCEEEEESSCCCS-CTTCCEEEEECHHHHHH
T ss_pred EEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHH-HHHCCCCEEEECCCCCC-CCceeEEEEeCHHHHHH
Confidence 34444555555534445556677777666 555543 3444544 66779999988764432 11222234456665555
Q ss_pred HHHhHHHhhhhHHHHhhHHHHHHHhh------cCceEEEEEee
Q psy17128 85 AFKDVIRFLNWTKKLLNAAFKDVIRF------LNWTKVAIVYE 121 (124)
Q Consensus 85 Ai~d~~~~~~~~~~~l~~a~~~li~~------~~W~~v~ivYe 121 (124)
..++. |++. .|-++++++..
T Consensus 114 ~a~~~-----------------l~~~~~~~~~~G~~~i~~i~g 139 (330)
T 3uug_A 114 LQATS-----------------ITDKLGLKDGKGPFNIELFGG 139 (330)
T ss_dssp HHHHH-----------------HHHHHTGGGTCCCEEEEECBC
T ss_pred HHHHH-----------------HHHHhcccCCCCceEEEEEEC
Confidence 55552 3332 57788888754
No 46
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=80.05 E-value=14 Score=26.41 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=53.1
Q ss_pred CCchHHHHHHHHHhhccC-cEEEE-cCCC-CCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhH
Q psy17128 13 NTGLEEEESVMCRQLQNG-VQALF-GPSD-ALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDV 89 (124)
Q Consensus 13 ~~~f~~~~~~~C~ll~~G-V~AI~-GP~s-~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~ 89 (124)
+.+.+...+.+-.++++| +-+|+ .|.+ ......++. +.+.+||++.+....... .+.-.+.+++....+..++.
T Consensus 41 ~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~-~~~~~ipvV~~~~~~~~~--~~~~~V~~d~~~~g~~~~~~ 117 (276)
T 3ksm_A 41 DGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQ-YRARNIPVLVVDSDLAGD--AHQGLVATDNYAAGQLAARA 117 (276)
T ss_dssp TTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHH-HHHTTCCEEEESSCCSSS--CSSEEEECCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHH-HHHCCCcEEEEecCCCCC--CcceEEccCHHHHHHHHHHH
Confidence 345555344556666778 77776 4433 344455554 567799999886543321 12223557766666666662
Q ss_pred HHhhhhHHHHhhHHHHHHHhhc---CceEEEEEeec
Q psy17128 90 IRFLNWTKKLLNAAFKDVIRFL---NWTKVAIVYEE 122 (124)
Q Consensus 90 ~~~~~~~~~~l~~a~~~li~~~---~W~~v~ivYe~ 122 (124)
|++.+ |-+++.++..+
T Consensus 118 -----------------l~~~~~~~G~~~i~~i~~~ 136 (276)
T 3ksm_A 118 -----------------LLATLDLSKERNIALLRLR 136 (276)
T ss_dssp -----------------HHHHSCTTSCEEEEECBCC
T ss_pred -----------------HHHhcCcCCCceEEEEEcC
Confidence 44443 78899888643
No 47
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=79.43 E-value=16 Score=26.69 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=50.8
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAF 86 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai 86 (124)
+.....+++-+...+.+-.++++++-+|+..........++.+. .+||+|.+........ + -.+.+++..-.+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~--~~iPvV~~~~~~~~~~--~-~~V~~D~~~~g~~a 115 (285)
T 3c3k_A 41 ILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNII--GAFPWVQCAEYDPLST--V-SSVSIDDVAASEYV 115 (285)
T ss_dssp EEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHH--TTSSEEEESSCCTTSS--S-CEEECCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHh--cCCCEEEEccccCCCC--C-CEEEEChHHHHHHH
Confidence 33334444444423333444567888777533322345566654 8999998865432111 1 23456666555555
Q ss_pred HhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 87 KDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 87 ~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
++. |++ .|-++++++...
T Consensus 116 ~~~-----------------L~~-~G~~~I~~i~~~ 133 (285)
T 3c3k_A 116 VDQ-----------------LVK-SGKKRIALINHD 133 (285)
T ss_dssp HHH-----------------HHH-TTCCCEEEEECC
T ss_pred HHH-----------------HHH-cCCCeEEEEeCC
Confidence 552 333 488888888754
No 48
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=79.01 E-value=17 Score=26.73 Aligned_cols=73 Identities=10% Similarity=0.084 Sum_probs=42.3
Q ss_pred chHHHHHHHHHhhccCcEEEE-cCCCCCc-HHHHHHhhccCCCceEEeeCCCCCC-CCceEEEeecCHHHHHHHHHh
Q psy17128 15 GLEEEESVMCRQLQNGVQALF-GPSDALL-GPHVQSICEALDVPHMESRLDLELN-SKEFSVNLYPSQKLLNAAFKD 88 (124)
Q Consensus 15 ~f~~~~~~~C~ll~~GV~AI~-GP~s~~~-~~~vqsic~~~~IP~i~~~~~~~~~-~~~f~vnl~P~~~~~~~Ai~d 88 (124)
+.+...+.+-+++++|+-+|+ .|.+... ...++ .+...+||+|.+....... .....-...+++....+..++
T Consensus 46 ~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~-~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~ 121 (297)
T 3rot_A 46 DVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQ-RANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGE 121 (297)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHH-HHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH-HHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHH
Confidence 445434455566678887766 5665443 44444 4566799999886543321 111223455676666666666
No 49
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=78.99 E-value=15 Score=26.23 Aligned_cols=94 Identities=10% Similarity=0.073 Sum_probs=51.6
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEE-cCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAA 85 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~-GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~A 85 (124)
+.-...+++-+...+.+-.++++|+-+|+ .|........++. +...+||+|.+........ + -.+.+++..-.+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~~--~-~~V~~d~~~~~~~ 110 (272)
T 3o74_A 35 LLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRE-LQDKGLPVIAIDRRLDPAH--F-CSVISDDRDASRQ 110 (272)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHH-HHHTTCCEEEESSCCCTTT--C-EEEEECHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHH-HHHcCCCEEEEccCCCccc--c-CEEEEchHHHHHH
Confidence 34444455555423333344467776665 4444333445554 5567999998875433222 1 2345666555555
Q ss_pred HHhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 86 FKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 86 i~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
.++ -+...|-++++++...
T Consensus 111 a~~------------------~L~~~G~~~i~~i~~~ 129 (272)
T 3o74_A 111 LAA------------------SLLSSAPRSIALIGAR 129 (272)
T ss_dssp HHH------------------HHHTTCCSEEEEEEEC
T ss_pred HHH------------------HHHHCCCcEEEEEecC
Confidence 555 3334588888888754
No 50
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=77.90 E-value=17 Score=26.26 Aligned_cols=88 Identities=3% Similarity=-0.002 Sum_probs=51.0
Q ss_pred chHHHHHHHHHhhccCcEEEEc-CCCCCc-HHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHh
Q psy17128 15 GLEEEESVMCRQLQNGVQALFG-PSDALL-GPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF 92 (124)
Q Consensus 15 ~f~~~~~~~C~ll~~GV~AI~G-P~s~~~-~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~ 92 (124)
+-+...+.+-.++++++-+|+. |.+... .+.++. ..+.+||+|.+....... ...-.+.+++....+..++.
T Consensus 50 ~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~~~~~--- 123 (289)
T 3brs_A 50 DYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAKE-IKDAGIKLIVIDSGMKQD--IADITVATDNIQAGIRIGAV--- 123 (289)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHTT-TGGGTCEEEEESSCCSSC--CCSEEEECCHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHH-HHHCCCcEEEECCCCCCC--cceEEEeeChHHHHHHHHHH---
Confidence 4444233344455678877764 443332 245554 455799999886543211 11234567777666666663
Q ss_pred hhhHHHHhhHHHHHHHhhcC-ceEEEEEeec
Q psy17128 93 LNWTKKLLNAAFKDVIRFLN-WTKVAIVYEE 122 (124)
Q Consensus 93 ~~~~~~~l~~a~~~li~~~~-W~~v~ivYe~ 122 (124)
|++.+| -++++++...
T Consensus 124 --------------L~~~~G~~~~i~~i~~~ 140 (289)
T 3brs_A 124 --------------TKNLVRKSGKIGVISFV 140 (289)
T ss_dssp --------------HHHHTSSSCEEEEEESC
T ss_pred --------------HHHHcCCCceEEEEECC
Confidence 555566 8999998754
No 51
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=77.50 E-value=18 Score=26.23 Aligned_cols=80 Identities=9% Similarity=0.197 Sum_probs=43.3
Q ss_pred eeEEEecCCchHHHHHHHHHhhccCcEEEE-cCCC-CCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHH
Q psy17128 6 SLVEVNVNTGLEEEESVMCRQLQNGVQALF-GPSD-ALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 83 (124)
Q Consensus 6 ~I~~i~~~~~f~~~~~~~C~ll~~GV~AI~-GP~s-~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~ 83 (124)
.+.....+++.+...+.+-.++++++-+|+ .|.+ ......++. +...+||+|.+........ ..-.+.+++....
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~~--~~~~V~~D~~~~g 116 (293)
T 3l6u_A 40 EALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEE-AKKAGIPVFAIDRMIRSDA--VVSSITSNNQMIG 116 (293)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHH-HHHTTCCEEEESSCCCCTT--CSEEEEECHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHH-HHHcCCCEEEecCCCCCCc--ceeEEecCHHHHH
Confidence 344445555555523444455567776655 3333 333355554 5567999998865433211 1234556766666
Q ss_pred HHHHh
Q psy17128 84 AAFKD 88 (124)
Q Consensus 84 ~Ai~d 88 (124)
+..++
T Consensus 117 ~~~~~ 121 (293)
T 3l6u_A 117 EQLAS 121 (293)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65555
No 52
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=76.08 E-value=22 Score=26.57 Aligned_cols=97 Identities=9% Similarity=0.081 Sum_probs=53.1
Q ss_pred eeEEEecCCchHHHHHHHHHhhccCcEEEEcC-CCCCc-HHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHH
Q psy17128 6 SLVEVNVNTGLEEEESVMCRQLQNGVQALFGP-SDALL-GPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 83 (124)
Q Consensus 6 ~I~~i~~~~~f~~~~~~~C~ll~~GV~AI~GP-~s~~~-~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~ 83 (124)
.+.....+++-+...+.+-.++++||-+|+.. .+... ...+.. +...+||+|.+....... ...-...+++....
T Consensus 38 ~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g 114 (325)
T 2x7x_A 38 SVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEE-AYQKGIPVILVDRKILSD--KYTAYIGADNYEIG 114 (325)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHH-HHHTTCCEEEESSCCSSS--CSSEEEEECHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH-HHHCCCeEEEeCCCCCCc--ceeEEEecCHHHHH
Confidence 34444444444442334445567888877753 33221 244443 456799999886533211 11223456766656
Q ss_pred HHHHhHHHhhhhHHHHhhHHHHHHHhhc-CceEEEEEeec
Q psy17128 84 AAFKDVIRFLNWTKKLLNAAFKDVIRFL-NWTKVAIVYEE 122 (124)
Q Consensus 84 ~Ai~d~~~~~~~~~~~l~~a~~~li~~~-~W~~v~ivYe~ 122 (124)
+..++. |++.+ |-++++++...
T Consensus 115 ~~a~~~-----------------L~~~~~G~~~I~~i~~~ 137 (325)
T 2x7x_A 115 RSVGNY-----------------IASSLKGKGNIVELTGL 137 (325)
T ss_dssp HHHHHH-----------------HHHHTTTEEEEEEEESC
T ss_pred HHHHHH-----------------HHHHcCCCceEEEEECC
Confidence 555553 45543 88999888753
No 53
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=75.67 E-value=21 Score=26.13 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=52.2
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAF 86 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai 86 (124)
+.....+++-+...+.+-.++++++-+|+-.........++.+ ...+||+|.+....... .+ -.+.+++..-.+..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l-~~~~iPvV~~~~~~~~~--~~-~~V~~D~~~~g~~a 124 (289)
T 2fep_A 49 IILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEF-KRSPVPIVLAASVEEQE--ET-PSVAIDYEQAIYDA 124 (289)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHH-HHSSSCEEEESCCCTTC--CS-CEEECCHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHH-HhcCCCEEEEccccCCC--CC-CEEEECcHHHHHHH
Confidence 3334444444442333444556788777642222234556654 46899999886543211 11 23556766666666
Q ss_pred HhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 87 KDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 87 ~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
++. |+ ..|-++++++...
T Consensus 125 ~~~-----------------L~-~~G~~~I~~i~~~ 142 (289)
T 2fep_A 125 VKL-----------------LV-DKGHTDIAFVSGP 142 (289)
T ss_dssp HHH-----------------HH-HTTCSSEEEEESC
T ss_pred HHH-----------------HH-HCCCCeEEEEeCC
Confidence 662 33 3588999988754
No 54
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=74.17 E-value=23 Score=25.85 Aligned_cols=91 Identities=13% Similarity=0.034 Sum_probs=49.5
Q ss_pred EecCCchHHHHHHHHHhhccCcEEEEc-CCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHh
Q psy17128 10 VNVNTGLEEEESVMCRQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKD 88 (124)
Q Consensus 10 i~~~~~f~~~~~~~C~ll~~GV~AI~G-P~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d 88 (124)
...+++-+...+.+-.++++++-+|+- |........++. ....+||+|.+....... .+ -.+.+++..-.+..++
T Consensus 56 ~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~--~~-~~V~~d~~~~~~~a~~ 131 (293)
T 2iks_A 56 ACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQR-WANDPFPIVALDRALDRE--HF-TSVVGADQDDAEMLAE 131 (293)
T ss_dssp EECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHT-TTTSSSCEEEEESCCCTT--TC-EEEEECHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHH-HHhCCCCEEEECCccCcC--CC-CEEEecCHHHHHHHHH
Confidence 344444444233344455678877663 333322234454 456799999887543211 12 2355666655555555
Q ss_pred HHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 89 VIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 89 ~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
. |+ ..|-+++.++...
T Consensus 132 ~-----------------L~-~~G~~~I~~i~~~ 147 (293)
T 2iks_A 132 E-----------------LR-KFPAETVLYLGAL 147 (293)
T ss_dssp H-----------------HH-TSCCSSEEEEEEC
T ss_pred H-----------------HH-HCCCCEEEEEecC
Confidence 2 33 3488888888754
No 55
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=73.64 E-value=23 Score=25.72 Aligned_cols=87 Identities=10% Similarity=0.079 Sum_probs=49.5
Q ss_pred chHHHHHHHHHhhccCcEEEE-cCCCCCcH-HHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHh
Q psy17128 15 GLEEEESVMCRQLQNGVQALF-GPSDALLG-PHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRF 92 (124)
Q Consensus 15 ~f~~~~~~~C~ll~~GV~AI~-GP~s~~~~-~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~ 92 (124)
+-+...+.+-+++++|+-+|+ .|.+.... ..++ .+...+||+|.+..... ....+ -...+++....+..++.
T Consensus 46 ~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~-~~~~~~ipvV~~~~~~~-~~~~~-~~v~~d~~~~g~~a~~~--- 119 (303)
T 3d02_A 46 DAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFK-KARDAGIVVLTNESPGQ-PSANW-DVEIIDNEKFAAEYVEH--- 119 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHH-HHHHTTCEEEEESCTTC-TTCSE-EEESSCHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH-HHHHCCCeEEEEecCCC-CCCce-EEEecCHHHHHHHHHHH---
Confidence 334323344455678887765 56543322 3333 45567999998865411 11222 23557766666666663
Q ss_pred hhhHHHHhhHHHHHHHhhcCce-EEEEEee
Q psy17128 93 LNWTKKLLNAAFKDVIRFLNWT-KVAIVYE 121 (124)
Q Consensus 93 ~~~~~~~l~~a~~~li~~~~W~-~v~ivYe 121 (124)
|++..|-+ +++++..
T Consensus 120 --------------l~~~~g~~~~i~~i~g 135 (303)
T 3d02_A 120 --------------MAKRMGGKGGYVIYVG 135 (303)
T ss_dssp --------------HHHHTTTCEEEEEECS
T ss_pred --------------HHHHhCcCceEEEEec
Confidence 55557877 8888764
No 56
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=73.60 E-value=23 Score=25.64 Aligned_cols=80 Identities=11% Similarity=0.109 Sum_probs=40.6
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEEc-CCCCC-cHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALFG-PSDAL-LGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNA 84 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~G-P~s~~-~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~ 84 (124)
+......++-+...+.+-.++++++-+|+. |.... ....++. +.+.+||+|.+........ .+...+.+++....+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~~-~~~~~V~~D~~~~~~ 112 (290)
T 2fn9_A 35 ATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKR-AKEAGIPVFCVDRGINARG-LAVAQIYSDNYYGGV 112 (290)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHH-HHHTTCCEEEESSCCSCSS-SSSEEEEECHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHH-HHHCCCeEEEEecCCCCCC-ceEEEEeCCHHHHHH
Confidence 333444444444233344455678877764 33332 2345554 4567999998865432111 111125566655555
Q ss_pred HHHh
Q psy17128 85 AFKD 88 (124)
Q Consensus 85 Ai~d 88 (124)
..++
T Consensus 113 ~~~~ 116 (290)
T 2fn9_A 113 LAGE 116 (290)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 57
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=73.24 E-value=25 Score=25.90 Aligned_cols=95 Identities=9% Similarity=0.087 Sum_probs=54.3
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEE-cCCCC-CcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALF-GPSDA-LLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNA 84 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~-GP~s~-~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~ 84 (124)
+.....+++-+...+.+-.++++++-+|+ .|.+. ...+.++. +.+.+||+|.+........ +.-.+..++....+
T Consensus 35 ~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~~--~~~~V~~D~~~~g~ 111 (313)
T 3m9w_A 35 VFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKE-AKQEGIKVLAYDRMINDAD--IDFYISFDNEKVGE 111 (313)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHH-HHTTTCEEEEESSCCTTSC--CSEEEEECHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH-HHHCCCeEEEECCcCCCCC--ceEEEecCHHHHHH
Confidence 34444455555423444455567776655 34443 33456555 5667999998875433211 21234566666666
Q ss_pred HHHhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEee
Q psy17128 85 AFKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYE 121 (124)
Q Consensus 85 Ai~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe 121 (124)
..++. |++..|=++++++..
T Consensus 112 ~a~~~-----------------L~~~~G~~~i~~i~g 131 (313)
T 3m9w_A 112 LQAKA-----------------LVDIVPQGNYFLMGG 131 (313)
T ss_dssp HHHHH-----------------HHHHCSSEEEEEEES
T ss_pred HHHHH-----------------HHHhCCCCcEEEEEC
Confidence 66663 554678888888764
No 58
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=72.90 E-value=11 Score=27.62 Aligned_cols=76 Identities=9% Similarity=0.093 Sum_probs=40.1
Q ss_pred HHHhhccCcEEEEc-CCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHhhhhHHHHhh
Q psy17128 23 MCRQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKKLLN 101 (124)
Q Consensus 23 ~C~ll~~GV~AI~G-P~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~~l~ 101 (124)
+-.++++++-+|+. |... ....++.+ ...+||+|.+....... + -.+.+++....+..++.
T Consensus 58 ~~~l~~~~vdgiI~~~~~~-~~~~~~~l-~~~~iPvV~~~~~~~~~---~-~~V~~D~~~~g~~a~~~------------ 119 (290)
T 3clk_A 58 LLTAIERPVMGILLLSIAL-TDDNLQLL-QSSDVPYCFLSMGFDDD---R-PFISSDDEDIGYQATNL------------ 119 (290)
T ss_dssp HHHHHSSCCSEEEEESCC-----CHHHH-HCC--CEEEESCC--CC---S-CEEECCHHHHHHHHHHH------------
T ss_pred HHHHHhcCCCEEEEecccC-CHHHHHHH-HhCCCCEEEEcCCCCCC---C-CEEEeChHHHHHHHHHH------------
Confidence 33445677777663 3332 22444543 45899999886543211 1 23556766666666662
Q ss_pred HHHHHHHhhcCceEEEEEeec
Q psy17128 102 AAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 102 ~a~~~li~~~~W~~v~ivYe~ 122 (124)
|+ ..|-++++++...
T Consensus 120 -----L~-~~G~~~i~~i~~~ 134 (290)
T 3clk_A 120 -----LI-NEGHRQIGIAGID 134 (290)
T ss_dssp -----HH-TTTCCSEEEESCC
T ss_pred -----HH-HcCCCEEEEEeCC
Confidence 33 3588888888754
No 59
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=71.05 E-value=26 Score=25.09 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=47.4
Q ss_pred cCCchHHHHHHHHHhhccCcEEEE-cCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHH
Q psy17128 12 VNTGLEEEESVMCRQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVI 90 (124)
Q Consensus 12 ~~~~f~~~~~~~C~ll~~GV~AI~-GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~ 90 (124)
.+++-+...+.+-.++++++-+|+ -|... ....++.+ ...+||+|.+...... ..+ -.+.+++....+..++.
T Consensus 41 ~~~~~~~~~~~~~~l~~~~vdgii~~~~~~-~~~~~~~l-~~~~iPvV~~~~~~~~--~~~-~~V~~d~~~~~~~a~~~- 114 (275)
T 3d8u_A 41 SDYSIEQEEKLLSTFLESRPAGVVLFGSEH-SQRTHQLL-EASNTPVLEIAELSSK--ASY-LNIGVDHFEVGKACTRH- 114 (275)
T ss_dssp CTTCHHHHHHHHHHHHTSCCCCEEEESSCC-CHHHHHHH-HHHTCCEEEESSSCSS--SSS-EEECBCHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeCCCC-CHHHHHHH-HhCCCCEEEEeeccCC--CCC-CEEEEChHHHHHHHHHH-
Confidence 334444422333444566766554 23332 23555554 4579999988653321 122 24566766656555552
Q ss_pred HhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 91 RFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 91 ~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
|++ .|-++++++...
T Consensus 115 ----------------L~~-~G~~~i~~i~~~ 129 (275)
T 3d8u_A 115 ----------------LIE-QGFKNVGFIGAR 129 (275)
T ss_dssp ----------------HHT-TTCCCEEEEECS
T ss_pred ----------------HHH-CCCCeEEEEcCC
Confidence 333 488888888754
No 60
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=69.71 E-value=11 Score=27.11 Aligned_cols=73 Identities=14% Similarity=0.038 Sum_probs=38.6
Q ss_pred HhhccCcEEEEc-CCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHhhhhHHHHhhHH
Q psy17128 25 RQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKKLLNAA 103 (124)
Q Consensus 25 ~ll~~GV~AI~G-P~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~~l~~a 103 (124)
.++++++-+|+. |.+.. ...++. ....+||++.+..... . + -...+++....+..++
T Consensus 50 ~l~~~~vdgiI~~~~~~~-~~~~~~-~~~~~iPvV~~~~~~~-~---~-~~V~~d~~~~~~~a~~--------------- 107 (276)
T 2h0a_A 50 TTLAYLTDGLILASYDLT-ERFEEG-RLPTERPVVLVDAQNP-R---Y-DSVYLDNRLGGRLAGA--------------- 107 (276)
T ss_dssp ----CCCSEEEEESCCCC--------CCSCSSCEEEESSCCT-T---S-EEEEECSHHHHHHHHH---------------
T ss_pred HHHhCCCCEEEEecCCCC-HHHHHH-HhhcCCCEEEEeccCC-C---C-CEEEEccHHHHHHHHH---------------
Confidence 345667777663 33322 245554 4567999998865432 1 2 3455666655665666
Q ss_pred HHHHHhhcCceEEEEEeec
Q psy17128 104 FKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 104 ~~~li~~~~W~~v~ivYe~ 122 (124)
.+...|-++++++...
T Consensus 108 ---~L~~~G~~~i~~i~~~ 123 (276)
T 2h0a_A 108 ---YLARFPGPIFAIAVEE 123 (276)
T ss_dssp ---HHTTSSSCEEEEEECC
T ss_pred ---HHHHcCCCeEEEEecC
Confidence 3334588999998754
No 61
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=69.48 E-value=28 Score=24.95 Aligned_cols=91 Identities=9% Similarity=0.072 Sum_probs=45.6
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAF 86 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai 86 (124)
+.-...+++.+...+.+-.++++++-+|+-.. ...+.++......+||+|.+........ .+.+++....+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~--~~~~~~~~~l~~~~iPvV~~~~~~~~~~-----~V~~D~~~~g~~a 113 (277)
T 3e61_A 41 VLIGNSDNDIKKAQGYLATFVSHNCTGMISTA--FNENIIENTLTDHHIPFVFIDRINNEHN-----GISTNHFKGGQLQ 113 (277)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTTCSEEEECG--GGHHHHHHHHHHC-CCEEEGGGCC--------------HHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec--CChHHHHHHHHcCCCCEEEEeccCCCCC-----eEEechHHHHHHH
Confidence 34445555555423333344467776666322 2344454145567999998865433111 5556666555555
Q ss_pred HhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 87 KDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 87 ~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
++ .+...|-++++++...
T Consensus 114 ~~------------------~L~~~G~~~i~~i~~~ 131 (277)
T 3e61_A 114 AE------------------VVRKGKGKNVLIVHEN 131 (277)
T ss_dssp HH------------------HHHHTTCCSEEEEESC
T ss_pred HH------------------HHHHCCCCeEEEEeCC
Confidence 55 3333588888888643
No 62
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=69.23 E-value=33 Score=25.65 Aligned_cols=91 Identities=16% Similarity=0.084 Sum_probs=49.8
Q ss_pred EecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhH
Q psy17128 10 VNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDV 89 (124)
Q Consensus 10 i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~ 89 (124)
...+++-+...+.+-.++++++-+|+..........+..+ ...+||++.+....... .+ -...+++..-.+..++.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l-~~~~iPvV~~~~~~~~~--~~-~~V~~D~~~~~~~a~~~ 174 (332)
T 2o20_A 99 ANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSL-KNSRTPVVLVGTIDGDK--EI-PSVNIDYHLAAYQSTKK 174 (332)
T ss_dssp EECTTCHHHHHHHHHHHHHTTCSEEEECSSCCCHHHHHHH-HHHCCCEEEESCCCTTS--CS-CEEECCHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHH-HhCCCCEEEEccccCCC--CC-CEEEeChHHHHHHHHHH
Confidence 3444444442333444556788777643222234555554 36799999886543211 12 13556666555555552
Q ss_pred HHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 90 IRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 90 ~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
|++ .|-++++++..+
T Consensus 175 -----------------L~~-~G~~~I~~i~~~ 189 (332)
T 2o20_A 175 -----------------LID-SGNKKIAYIMGS 189 (332)
T ss_dssp -----------------HHH-TTCSSEEEECSC
T ss_pred -----------------HHH-CCCCeEEEEeCC
Confidence 333 588899888754
No 63
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=68.77 E-value=31 Score=25.13 Aligned_cols=77 Identities=6% Similarity=0.049 Sum_probs=44.1
Q ss_pred HHHhhccCcEEEEc-CCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHhhhhHHHHhh
Q psy17128 23 MCRQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKKLLN 101 (124)
Q Consensus 23 ~C~ll~~GV~AI~G-P~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~~l~ 101 (124)
+-.++++++-+|+- |.+.. ...++.+ ...+||+|.+....... .+ -.+.+++..-.+..++.
T Consensus 60 ~~~l~~~~vdgiIi~~~~~~-~~~~~~l-~~~~iPvV~~~~~~~~~--~~-~~V~~D~~~~g~~a~~~------------ 122 (290)
T 2rgy_A 60 VRFLIGRDCDGVVVISHDLH-DEDLDEL-HRMHPKMVFLNRAFDAL--PD-ASFCPDHRRGGELAAAT------------ 122 (290)
T ss_dssp HHHHHHTTCSEEEECCSSSC-HHHHHHH-HHHCSSEEEESSCCTTS--GG-GEECCCHHHHHHHHHHH------------
T ss_pred HHHHHhcCccEEEEecCCCC-HHHHHHH-hhcCCCEEEEccccCCC--CC-CEEEeCcHHHHHHHHHH------------
Confidence 34445678877764 33322 4555554 45799999886543211 11 13456666555555552
Q ss_pred HHHHHHHhhcCceEEEEEeec
Q psy17128 102 AAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 102 ~a~~~li~~~~W~~v~ivYe~ 122 (124)
|++ .|-++++++...
T Consensus 123 -----L~~-~G~~~I~~i~~~ 137 (290)
T 2rgy_A 123 -----LIE-HGHRKLAVISGP 137 (290)
T ss_dssp -----HHH-TTCCSEEEEESC
T ss_pred -----HHH-CCCceEEEEeCC
Confidence 333 488888888654
No 64
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=68.72 E-value=34 Score=25.54 Aligned_cols=95 Identities=11% Similarity=-0.040 Sum_probs=54.2
Q ss_pred EecCCchHHHHHHHHHhhccC--cEEEEc-CCCCCc-HHHHHHhhccCCCceEEeeCCCCCCC----C-ceEEEeecCHH
Q psy17128 10 VNVNTGLEEEESVMCRQLQNG--VQALFG-PSDALL-GPHVQSICEALDVPHMESRLDLELNS----K-EFSVNLYPSQK 80 (124)
Q Consensus 10 i~~~~~f~~~~~~~C~ll~~G--V~AI~G-P~s~~~-~~~vqsic~~~~IP~i~~~~~~~~~~----~-~f~vnl~P~~~ 80 (124)
...+++-+...+.+-.+++++ +-+|+. |.+... ...++. +...+||+|.+........ . ...-.+.+++.
T Consensus 41 ~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~ 119 (332)
T 2rjo_A 41 LTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVEA-CSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGV 119 (332)
T ss_dssp EECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHHH-HHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHH
T ss_pred ecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHHH-HHHCCCeEEEECCCCCcccchhcccceeEEEccChH
Confidence 344444444233444556678 888775 433222 134444 4457999998865332100 0 23345677877
Q ss_pred HHHHHHHhHHHhhhhHHHHhhHHHHHHHhh-cCceEEEEEeec
Q psy17128 81 LLNAAFKDVIRFLNWTKKLLNAAFKDVIRF-LNWTKVAIVYEE 122 (124)
Q Consensus 81 ~~~~Ai~d~~~~~~~~~~~l~~a~~~li~~-~~W~~v~ivYe~ 122 (124)
...+..++. |++. .|-++++++...
T Consensus 120 ~~g~~a~~~-----------------L~~~~~G~~~I~~i~g~ 145 (332)
T 2rjo_A 120 AYGEETATQ-----------------LFKSMGGKGGVVALGGI 145 (332)
T ss_dssp HHHHHHHHH-----------------HHHHTTTCEEEEEEECC
T ss_pred HHHHHHHHH-----------------HHHHcCCCCeEEEEECC
Confidence 666666663 5554 588999998754
No 65
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=67.96 E-value=32 Score=25.00 Aligned_cols=77 Identities=12% Similarity=-0.025 Sum_probs=43.4
Q ss_pred HHHhhccCcEEEEc-CCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHhhhhHHHHhh
Q psy17128 23 MCRQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKKLLN 101 (124)
Q Consensus 23 ~C~ll~~GV~AI~G-P~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~~l~ 101 (124)
+-.++++++-+|+- |.+.. ...++.+ ...+||+|.+....... .+ -...+++..-.+..++.
T Consensus 57 ~~~l~~~~vdgiIi~~~~~~-~~~~~~l-~~~~iPvV~~~~~~~~~--~~-~~V~~D~~~~g~~a~~~------------ 119 (287)
T 3bbl_A 57 RDLIRSGNVDGFVLSSINYN-DPRVQFL-LKQKFPFVAFGRSNPDW--DF-AWVDIDGTAGTRQAVEY------------ 119 (287)
T ss_dssp HHHHHTTCCSEEEECSCCTT-CHHHHHH-HHTTCCEEEESCCSTTC--CC-CEEEECHHHHHHHHHHH------------
T ss_pred HHHHHcCCCCEEEEeecCCC-cHHHHHH-HhcCCCEEEECCcCCCC--CC-CEEEeccHHHHHHHHHH------------
Confidence 33445678777663 43322 2455554 45799999886543211 11 23446665555555552
Q ss_pred HHHHHHHhhcCceEEEEEeec
Q psy17128 102 AAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 102 ~a~~~li~~~~W~~v~ivYe~ 122 (124)
|++ .|-++++++...
T Consensus 120 -----L~~-~G~~~I~~i~~~ 134 (287)
T 3bbl_A 120 -----LIG-RGHRRIAILAWP 134 (287)
T ss_dssp -----HHH-HTCCCEEEEECC
T ss_pred -----HHH-CCCCeEEEEeCC
Confidence 333 488888888754
No 66
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=64.86 E-value=38 Score=24.66 Aligned_cols=90 Identities=10% Similarity=0.032 Sum_probs=51.1
Q ss_pred cCCchHHHHHHHHHhhccCcEEEE-cCCCC-CcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhH
Q psy17128 12 VNTGLEEEESVMCRQLQNGVQALF-GPSDA-LLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDV 89 (124)
Q Consensus 12 ~~~~f~~~~~~~C~ll~~GV~AI~-GP~s~-~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~ 89 (124)
.+.+-+...+.+-.++++|+-+|+ .|.+. .....++. +...+||+|.+........ ..-.+.+++....+..++.
T Consensus 43 ~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~~--~~~~V~~d~~~~g~~~~~~ 119 (305)
T 3g1w_A 43 AQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINK-AVDAGIPIVLFDSGAPDSH--AHSFLGTNNYNAGMNAAYK 119 (305)
T ss_dssp SSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHH-HHHTTCCEEEESSCCTTSC--CSCEEECCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHH-HHHCCCcEEEECCCCCCCc--eeEEECcCHHHHHHHHHHH
Confidence 344455434445555677877666 44443 33455555 4557999998875433211 1123457766666666662
Q ss_pred HHhhhhHHHHhhHHHHHHHhhc-CceEEEEEee
Q psy17128 90 IRFLNWTKKLLNAAFKDVIRFL-NWTKVAIVYE 121 (124)
Q Consensus 90 ~~~~~~~~~~l~~a~~~li~~~-~W~~v~ivYe 121 (124)
|++.+ |=+++.++..
T Consensus 120 -----------------l~~~~~g~~~i~~i~~ 135 (305)
T 3g1w_A 120 -----------------MAELLDGEGEVAVITL 135 (305)
T ss_dssp -----------------HHHHTTTCEEEEEEEC
T ss_pred -----------------HHHHhCCCcEEEEEeC
Confidence 33332 7788888864
No 67
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=64.11 E-value=43 Score=25.02 Aligned_cols=89 Identities=10% Similarity=0.070 Sum_probs=47.2
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAF 86 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai 86 (124)
+.....+++-+...+.+-.++++++-+|+.|.... . ......+||++.+...... .+ -.+.+++..-.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~-~----~~l~~~~iPvV~~~~~~~~---~~-~~V~~D~~~~~~~a 163 (330)
T 3ctp_A 93 LFLCNTDDDKEKEKTYLEVLQSHRVAGIIASRSQC-E----DEYANIDIPVVAFENHILD---NI-ITISSDNYNGGRMA 163 (330)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTTCSEEEEETCCC-S----GGGTTCCSCEEEESSCCCT---TS-CEEEECHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHhCCCCEEEECCCCC-H----HHHHhcCCCEEEEeccCCC---CC-CEEEeCHHHHHHHH
Confidence 33334444444423334445567787777222222 1 1234679999988654321 22 13446665555555
Q ss_pred HhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 87 KDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 87 ~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
++. |++ .|-++++++...
T Consensus 164 ~~~-----------------L~~-~G~~~I~~i~~~ 181 (330)
T 3ctp_A 164 FDH-----------------LYE-KGCRKILHIKGP 181 (330)
T ss_dssp HHH-----------------HHH-TTCCSEEEEECC
T ss_pred HHH-----------------HHH-CCCCeEEEEeCC
Confidence 552 333 488888888754
No 68
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=63.89 E-value=38 Score=24.35 Aligned_cols=94 Identities=10% Similarity=0.050 Sum_probs=51.6
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEE-cCCCC----CcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALF-GPSDA----LLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKL 81 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~-GP~s~----~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~ 81 (124)
+.-...+++-+...+.+-.++++|+-+|+ -|.+. .....++. ....+||+|.+....+..... .+..++..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~~~~---~V~~d~~~ 123 (298)
T 3tb6_A 48 MLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLN-LEKNGIPFAMINASYAELAAP---SFTLDDVK 123 (298)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHH-HHHTTCCEEEESSCCTTCSSC---EEEECHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHH-HHhcCCCEEEEecCcCCCCCC---EEEeCcHH
Confidence 44444455555423334444567776665 44432 23345554 456799999886543322211 24556655
Q ss_pred HHHHHHhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 82 LNAAFKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 82 ~~~Ai~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
-.+..++ .+...|-+++.++...
T Consensus 124 ~~~~a~~------------------~L~~~G~~~i~~i~~~ 146 (298)
T 3tb6_A 124 GGMMAAE------------------HLLSLGHTHMMGIFKA 146 (298)
T ss_dssp HHHHHHH------------------HHHHTTCCSEEEEEES
T ss_pred HHHHHHH------------------HHHHCCCCcEEEEcCC
Confidence 5555555 3333588888888754
No 69
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=63.58 E-value=41 Score=24.69 Aligned_cols=90 Identities=8% Similarity=0.104 Sum_probs=50.2
Q ss_pred eEEEecCCchHHHHHHHHHh-hccCcEEEE-cCCCCCcHH-HHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQ-LQNGVQALF-GPSDALLGP-HVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLN 83 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~l-l~~GV~AI~-GP~s~~~~~-~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~ 83 (124)
+.-....++-+. .....+. ++++|-+|+ -|.... .. .++.+.+ +||+|.+...... .. -.+..++..-.
T Consensus 48 ~~~~~~~~~~~~-~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~~l~~--~iPvV~i~~~~~~-~~---~~V~~D~~~~g 119 (303)
T 3kke_A 48 VLLGQIDAPPRG-TQQLSRLVSEGRVDGVLLQRREDF-DDDMLAAVLE--GVPAVTINSRVPG-RV---GSVILDDQKGG 119 (303)
T ss_dssp EEEEECCSTTHH-HHHHHHHHHSCSSSEEEECCCTTC-CHHHHHHHHT--TSCEEEESCCCTT-CC---CEEEECHHHHH
T ss_pred EEEEeCCCChHH-HHHHHHHHHhCCCcEEEEecCCCC-cHHHHHHHhC--CCCEEEECCcCCC-CC---CEEEECcHHHH
Confidence 333444444454 3344444 467777666 343333 34 6777666 9999988754432 22 12455655555
Q ss_pred HHHHhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 84 AAFKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 84 ~Ai~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
+..++ -+...|-++++++...
T Consensus 120 ~~a~~------------------~L~~~G~~~I~~i~~~ 140 (303)
T 3kke_A 120 GIATE------------------HLITLGHSRIAFISGT 140 (303)
T ss_dssp HHHHH------------------HHHHTTCCSEEEEESC
T ss_pred HHHHH------------------HHHHCCCCeEEEEeCC
Confidence 55555 2233588888888643
No 70
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=63.47 E-value=40 Score=24.44 Aligned_cols=93 Identities=11% Similarity=0.077 Sum_probs=50.5
Q ss_pred EecCCchHHHHHHHHHhhccCcEEEE-cCCCCCc-HHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHH
Q psy17128 10 VNVNTGLEEEESVMCRQLQNGVQALF-GPSDALL-GPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFK 87 (124)
Q Consensus 10 i~~~~~f~~~~~~~C~ll~~GV~AI~-GP~s~~~-~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~ 87 (124)
...+++-+...+.+=.+++++|-+|+ .|..... .+.++. +...+||+|.+........ .+ -.+.+++..-.+..+
T Consensus 37 ~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~~-~~-~~V~~D~~~~g~~a~ 113 (283)
T 2ioy_A 37 EDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKE-ANSKNIPVITIDRSANGGD-VV-CHIASDNVKGGEMAA 113 (283)
T ss_dssp EECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHH-HHHTTCCEEEESSCCSSSC-CS-EEEEECHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHH-HHHCCCeEEEecCCCCCcc-ee-EEEecChHHHHHHHH
Confidence 33344444423344455677876655 4544332 345554 5567999998865332111 11 234466655555555
Q ss_pred hHHHhhhhHHHHhhHHHHHHHhhcC-ceEEEEEeec
Q psy17128 88 DVIRFLNWTKKLLNAAFKDVIRFLN-WTKVAIVYEE 122 (124)
Q Consensus 88 d~~~~~~~~~~~l~~a~~~li~~~~-W~~v~ivYe~ 122 (124)
+. |++.+| -++++++...
T Consensus 114 ~~-----------------L~~~~gg~~~I~~i~g~ 132 (283)
T 2ioy_A 114 EF-----------------IAKALKGKGNVVELEGI 132 (283)
T ss_dssp HH-----------------HHHHTTTCEEEEEEECC
T ss_pred HH-----------------HHHHcCCCceEEEEECC
Confidence 53 556555 7888888643
No 71
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=61.56 E-value=47 Score=24.71 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=48.0
Q ss_pred ecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHH
Q psy17128 11 NVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVI 90 (124)
Q Consensus 11 ~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~ 90 (124)
..+++-+...+.+-.++++++-+|+..........++.+ ...++|++.+....... .+ -.+..++..-.+..++.
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l-~~~~iPvV~~~~~~~~~--~~-~~V~~D~~~~~~~a~~~- 171 (332)
T 2hsg_A 97 NSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEEL-KKSPVPVVLAASIESTN--QI-PSVTIDYEQAAFDAVQS- 171 (332)
T ss_dssp ECCSHHHHHHHHHHHTSCCSSCCEEECCSSCCHHHHHHH-TTSSSCEEEESCCCSCT--TS-CEEEECHHHHHHHHHHH-
T ss_pred eCCCChHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH-HhCCCCEEEEccccCCC--CC-CEEEEChHHHHHHHHHH-
Confidence 333444432223334456777776643222233556554 46799999886543211 11 13446655555555552
Q ss_pred HhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 91 RFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 91 ~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
|++ .|-++++++...
T Consensus 172 ----------------L~~-~G~~~I~~i~~~ 186 (332)
T 2hsg_A 172 ----------------LID-SGHKNIAFVSGT 186 (332)
T ss_dssp ----------------HHT-TTCSCEEEEESC
T ss_pred ----------------HHH-CCCCEEEEEeCC
Confidence 333 588999988754
No 72
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=61.39 E-value=48 Score=24.68 Aligned_cols=90 Identities=8% Similarity=0.051 Sum_probs=51.4
Q ss_pred CchHHHHHHHHHhhccCcEEEEcCCCCC-cHHHHHHhhccCCCceEEe-eCCCCC----CCCceEEEeecCHHHHHHHHH
Q psy17128 14 TGLEEEESVMCRQLQNGVQALFGPSDAL-LGPHVQSICEALDVPHMES-RLDLEL----NSKEFSVNLYPSQKLLNAAFK 87 (124)
Q Consensus 14 ~~f~~~~~~~C~ll~~GV~AI~GP~s~~-~~~~vqsic~~~~IP~i~~-~~~~~~----~~~~f~vnl~P~~~~~~~Ai~ 87 (124)
++-+...+.+-.++++++-+|+-|.+.. ....++.+ .+.++|.|.+ ....+. .... .-.+.+++..-.+..+
T Consensus 88 ~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~-~~~~ip~V~~~~~~~~~~~~~~~~~-~~~V~~D~~~~g~~a~ 165 (342)
T 1jx6_A 88 ADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHV-LDSTNTKLILQNITTPVREWDKHQP-FLYVGFDHAEGSRELA 165 (342)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHHH-HHHCSCEEEEETCCSCBGGGTTSCC-SEEEECCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHHH-HHcCCCEEEEecCCCcccccccCCC-ceEEecCcHHHHHHHH
Confidence 3444423344455577887777665543 24566654 4568999877 332110 1112 2346677766666666
Q ss_pred hHHHhhhhHHHHhhHHHHHHHhhcC-ceEEEEEeec
Q psy17128 88 DVIRFLNWTKKLLNAAFKDVIRFLN-WTKVAIVYEE 122 (124)
Q Consensus 88 d~~~~~~~~~~~l~~a~~~li~~~~-W~~v~ivYe~ 122 (124)
+. |++.+| -++++++...
T Consensus 166 ~~-----------------L~~~~Gg~~~I~~i~~~ 184 (342)
T 1jx6_A 166 TE-----------------FGKFFPKHTYYSVLYFS 184 (342)
T ss_dssp HH-----------------HHHHSCTTCEEEEECCS
T ss_pred HH-----------------HHHHcCCCceEEEEEcC
Confidence 63 556566 8999888643
No 73
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=61.27 E-value=44 Score=24.23 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=31.2
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEE-cCCCCCcHHHHHHhhccCCCceEEeeC
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRL 62 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~-GP~s~~~~~~vqsic~~~~IP~i~~~~ 62 (124)
+.....+ +-+...+.+=+++++|+-+|+ .|.+.......-..+...+||+|.+..
T Consensus 35 ~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 35 VIKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred EEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCC
Confidence 3344443 444424445556678877765 455444333323346667999998874
No 74
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=60.84 E-value=44 Score=24.14 Aligned_cols=94 Identities=11% Similarity=0.116 Sum_probs=52.8
Q ss_pred eeEEEecCCchHHHHHHHHHhhccCcEEEE-cCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHH
Q psy17128 6 SLVEVNVNTGLEEEESVMCRQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNA 84 (124)
Q Consensus 6 ~I~~i~~~~~f~~~~~~~C~ll~~GV~AI~-GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~ 84 (124)
.+.-...+++-+...+.+-.++++++-+|+ .|... ....++. +...+||+|.+....... .+ -.+..++....+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~-~~~~~iPvV~~~~~~~~~--~~-~~V~~D~~~~g~ 114 (291)
T 3egc_A 40 SVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRT-ELPKTFPIVAVNRELRIP--GC-GAVLSENVRGAR 114 (291)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHH-SSCTTSCEEEESSCCCCT--TC-EEEEECHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHH-hhccCCCEEEEecccCCC--CC-CEEEECcHHHHH
Confidence 344444555555523333344467777766 34333 4455544 566799999886543321 12 345566666666
Q ss_pred HHHhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 85 AFKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 85 Ai~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
..++ .+...|-++++++...
T Consensus 115 ~a~~------------------~L~~~G~~~i~~i~~~ 134 (291)
T 3egc_A 115 TAVE------------------YLIARGHTRIGAIVGS 134 (291)
T ss_dssp HHHH------------------HHHHTTCCSEEEECSC
T ss_pred HHHH------------------HHHHcCCCEEEEEeCC
Confidence 5555 3333588888888654
No 75
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=57.61 E-value=52 Score=23.93 Aligned_cols=80 Identities=9% Similarity=-0.014 Sum_probs=46.3
Q ss_pred HHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHhhhhHHHH
Q psy17128 20 ESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKKL 99 (124)
Q Consensus 20 ~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~~ 99 (124)
.+.+-.+++++|-+|+-.........++.+. . +||+|.+....... .+ -....++..-.+..++
T Consensus 56 ~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~-~-~iPvV~i~~~~~~~--~~-~~V~~D~~~~~~~a~~----------- 119 (289)
T 3k9c_A 56 KVAVQALMRERCEAAILLGTRFDTDELGALA-D-RVPALVVARASGLP--GV-GAVRGDDVAGITLAVD----------- 119 (289)
T ss_dssp HHHHHHHTTTTEEEEEEETCCCCHHHHHHHH-T-TSCEEEESSCCSST--TS-EEEEECHHHHHHHHHH-----------
T ss_pred HHHHHHHHhCCCCEEEEECCCCCHHHHHHHH-c-CCCEEEEcCCCCCC--CC-CEEEeChHHHHHHHHH-----------
Confidence 4455556677887776322222336666654 4 99999886543322 22 2345666655555555
Q ss_pred hhHHHHHHHhhcCceEEEEEeec
Q psy17128 100 LNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 100 l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
-+...|-++++++...
T Consensus 120 -------~L~~~G~~~I~~i~~~ 135 (289)
T 3k9c_A 120 -------HLTELGHRNIAHIDGA 135 (289)
T ss_dssp -------HHHHTTCCSEEEECCT
T ss_pred -------HHHHCCCCcEEEEeCC
Confidence 2333588888887643
No 76
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=57.24 E-value=56 Score=24.14 Aligned_cols=53 Identities=8% Similarity=0.034 Sum_probs=29.7
Q ss_pred eeEEEecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 6 SLVEVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 6 ~I~~i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
.+...+.+.+-+.+.+.+-.+.+++|-+|+...+.. ...+.. ...++|+|...
T Consensus 45 ~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~~-~~~~~~--~~~~iPvV~~~ 97 (302)
T 2qh8_A 45 EFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATPT-AQALVS--ATKTIPIVFTA 97 (302)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHHH-HHHHHH--HCSSSCEEEEE
T ss_pred EEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChHH-HHHHHh--cCCCcCEEEEe
Confidence 444455566666523334444567777777654322 223333 26799999875
No 77
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=57.00 E-value=59 Score=24.33 Aligned_cols=92 Identities=13% Similarity=0.084 Sum_probs=48.6
Q ss_pred EecCCchHHHHHHHHHhhccCcEEEEc-CCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHh
Q psy17128 10 VNVNTGLEEEESVMCRQLQNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKD 88 (124)
Q Consensus 10 i~~~~~f~~~~~~~C~ll~~GV~AI~G-P~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d 88 (124)
...+++-+...+.+-.++++++-+|+- |... ....+..+....+||+|.+....... .+.-...+++..-.+..++
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~-~~~~~~~l~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~~~~a~~ 170 (340)
T 1qpz_A 94 GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY-PEPLLAMLEEYRHIPMVVMDWGEAKA--DFTDAVIDNAFEGGYMAGR 170 (340)
T ss_dssp EECTTCHHHHHHHHHHHHHTTCSEEEECCSCC-CHHHHHHHHTTTTSCEEEEEESSCCC--SSSEEEECCHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCC-ChHHHHHHHhhCCCCEEEEecccCCC--CCCCEEEECHHHHHHHHHH
Confidence 344444444223344445678877763 3332 22334433334689999886533211 2112455676655555555
Q ss_pred HHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 89 VIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 89 ~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
. |++ .|-++++++...
T Consensus 171 ~-----------------L~~-~G~~~I~~i~g~ 186 (340)
T 1qpz_A 171 Y-----------------LIE-RGHREIGVIPGP 186 (340)
T ss_dssp H-----------------HHH-HTCCCEEEECCC
T ss_pred H-----------------HHH-CCCCEEEEEeCC
Confidence 2 333 488999988653
No 78
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=56.77 E-value=31 Score=24.76 Aligned_cols=72 Identities=8% Similarity=-0.003 Sum_probs=37.6
Q ss_pred HhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCC-CCCCCceEEEeecCHHHHHHHHHhHHHhhhhHHHHhhHH
Q psy17128 25 RQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDL-ELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKKLLNAA 103 (124)
Q Consensus 25 ~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~-~~~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~~l~~a 103 (124)
.++++++-+|+ -........+.. .+||+|.+.... ...... ...+++....+..++
T Consensus 55 ~l~~~~vdgiI-~~~~~~~~~~~~----~~iPvV~~~~~~~~~~~~~---~V~~D~~~~g~~a~~--------------- 111 (280)
T 3gyb_A 55 SALSMRPDGII-IAQDIPDFTVPD----SLPPFVIAGTRITQASTHD---SVANDDFRGAEIATK--------------- 111 (280)
T ss_dssp HHHTTCCSEEE-EESCC------------CCCEEEESCCCSSSCSTT---EEEECHHHHHHHHHH---------------
T ss_pred HHHhCCCCEEE-ecCCCChhhHhh----cCCCEEEECCCCCCCCCCC---EEEechHHHHHHHHH---------------
Confidence 34566777776 222222334433 899999887544 222222 245666666666666
Q ss_pred HHHHHhhcCceEEEEEeec
Q psy17128 104 FKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 104 ~~~li~~~~W~~v~ivYe~ 122 (124)
.+...|-++++++...
T Consensus 112 ---~L~~~G~~~i~~i~~~ 127 (280)
T 3gyb_A 112 ---HLIDLGHTHIAHLRVG 127 (280)
T ss_dssp ---HHHHTTCCSEEEECCS
T ss_pred ---HHHHCCCCeEEEEeCC
Confidence 3334588888888654
No 79
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=55.02 E-value=56 Score=23.47 Aligned_cols=89 Identities=8% Similarity=-0.009 Sum_probs=48.5
Q ss_pred ecCCchHHHHHHHHHhh-ccCcEEEEc-CCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHh
Q psy17128 11 NVNTGLEEEESVMCRQL-QNGVQALFG-PSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKD 88 (124)
Q Consensus 11 ~~~~~f~~~~~~~C~ll-~~GV~AI~G-P~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d 88 (124)
..+++-+. .....+++ ++++-+|+- |... ....++ .....+||+|.+......... .-.+..++..-.+..++
T Consensus 50 ~~~~~~~~-~~~~~~~~~~~~vdgiIi~~~~~-~~~~~~-~l~~~~iPvV~~~~~~~~~~~--~~~V~~D~~~~g~~a~~ 124 (292)
T 3k4h_A 50 TGETEEEI-FNGVVKMVQGRQIGGIILLYSRE-NDRIIQ-YLHEQNFPFVLIGKPYDRKDE--ITYVDNDNYTAAREVAE 124 (292)
T ss_dssp CCCSHHHH-HHHHHHHHHTTCCCEEEESCCBT-TCHHHH-HHHHTTCCEEEESCCSSCTTT--SCEEECCHHHHHHHHHH
T ss_pred eCCCCHHH-HHHHHHHHHcCCCCEEEEeCCCC-ChHHHH-HHHHCCCCEEEECCCCCCCCC--CCEEEECcHHHHHHHHH
Confidence 33333343 33444444 567777663 3332 224444 456679999988654332211 12345666655555555
Q ss_pred HHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 89 VIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 89 ~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
.+...|-++++++...
T Consensus 125 ------------------~L~~~G~~~i~~i~~~ 140 (292)
T 3k4h_A 125 ------------------YLISLGHKQIAFIGGG 140 (292)
T ss_dssp ------------------HHHHTTCCCEEEEESC
T ss_pred ------------------HHHHCCCceEEEEeCc
Confidence 3333588899888754
No 80
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=54.81 E-value=60 Score=23.75 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=40.2
Q ss_pred EecCCchHHHHHHHHHhhccCcEEEEc-CCCCCc-HHHHHHhhccCCCceEEeeCCCCCCC-CceEEEeecCHHHHHHHH
Q psy17128 10 VNVNTGLEEEESVMCRQLQNGVQALFG-PSDALL-GPHVQSICEALDVPHMESRLDLELNS-KEFSVNLYPSQKLLNAAF 86 (124)
Q Consensus 10 i~~~~~f~~~~~~~C~ll~~GV~AI~G-P~s~~~-~~~vqsic~~~~IP~i~~~~~~~~~~-~~f~vnl~P~~~~~~~Ai 86 (124)
...+++-+...+.+-.+++++|-+|+- |.+... ...++. +...+||+|.+........ ....-.+..++..-.+..
T Consensus 38 ~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a 116 (306)
T 2vk2_A 38 ADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKE-AKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLI 116 (306)
T ss_dssp EECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHH-HHHTTCCEEEESSCCCCSCGGGSSEEEECCHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHH-HHHCCCCEEEecCCCCCCCccceEEEEecCHHHHHHHH
Confidence 344444444233344455678877663 444332 345544 4567999998865432111 111234556766555555
Q ss_pred Hh
Q psy17128 87 KD 88 (124)
Q Consensus 87 ~d 88 (124)
++
T Consensus 117 ~~ 118 (306)
T 2vk2_A 117 GD 118 (306)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 81
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=54.74 E-value=56 Score=23.43 Aligned_cols=92 Identities=14% Similarity=0.147 Sum_probs=52.4
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEE-cCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAA 85 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~-GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~A 85 (124)
+.-...+++.+...+.+-.++++++-+|+ .|... ...++. ....+||+|.+.......... .+..++..-.+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~-l~~~~iPvV~i~~~~~~~~~~---~V~~D~~~~g~~ 113 (276)
T 3jy6_A 40 GVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQE-ILHQQMPVVSVDREMDACPWP---QVVTDNFEAAKA 113 (276)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHH-HHTTSSCEEEESCCCTTCSSC---EEECCHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHH-HHHCCCCEEEEecccCCCCCC---EEEEChHHHHHH
Confidence 34444555555423333444466776665 34333 455554 556799999886543322222 345666666666
Q ss_pred HHhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 86 FKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 86 i~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
.++ -+...|-++++++...
T Consensus 114 a~~------------------~L~~~G~~~I~~i~~~ 132 (276)
T 3jy6_A 114 ATT------------------AFRQQGYQHVVVLTSE 132 (276)
T ss_dssp HHH------------------HHHTTTCCEEEEEEEC
T ss_pred HHH------------------HHHHcCCCeEEEEecC
Confidence 666 3344688999998764
No 82
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=54.59 E-value=57 Score=23.44 Aligned_cols=79 Identities=6% Similarity=0.051 Sum_probs=46.6
Q ss_pred HHHHHhhccCcEEEE-cCCCC-CcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHhhhhHHH
Q psy17128 21 SVMCRQLQNGVQALF-GPSDA-LLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKK 98 (124)
Q Consensus 21 ~~~C~ll~~GV~AI~-GP~s~-~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~ 98 (124)
+.+-.++++++-+|+ -|.+. .....++. +...+||+|.+........ . .-.+.+++..-.+..++
T Consensus 60 ~~i~~l~~~~vdgiii~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~~-~-~~~V~~D~~~~g~~a~~---------- 126 (304)
T 3gbv_A 60 ATSQAVIEEQPDGVMFAPTVPQYTKGFTDA-LNELGIPYIYIDSQIKDAP-P-LAFFGQNSHQSGYFAAR---------- 126 (304)
T ss_dssp HHHHHHHTTCCSEEEECCSSGGGTHHHHHH-HHHHTCCEEEESSCCTTSC-C-SEEEECCHHHHHHHHHH----------
T ss_pred HHHHHHHhcCCCEEEECCCChHHHHHHHHH-HHHCCCeEEEEeCCCCCCC-c-eEEEecChHHHHHHHHH----------
Confidence 334445577877766 44443 34455554 5566999998875433211 1 23456777666666666
Q ss_pred HhhHHHHHHHhhcCc--eEEEEEe
Q psy17128 99 LLNAAFKDVIRFLNW--TKVAIVY 120 (124)
Q Consensus 99 ~l~~a~~~li~~~~W--~~v~ivY 120 (124)
.+...|- +++.++.
T Consensus 127 --------~l~~~g~~~~~i~~i~ 142 (304)
T 3gbv_A 127 --------MLMLLAVNDREIVIFR 142 (304)
T ss_dssp --------HHHHHSTTCSEEEEEE
T ss_pred --------HHHHHhCCCCeEEEEE
Confidence 3344466 8888886
No 83
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=52.54 E-value=8.2 Score=28.47 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=24.1
Q ss_pred cEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 31 VQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 31 V~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
+..++||-.+-=+-.-+.+++.+++|||++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 467889988666666677899999999986
No 84
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=51.70 E-value=65 Score=23.26 Aligned_cols=81 Identities=16% Similarity=0.101 Sum_probs=42.8
Q ss_pred eEEEecCCchHHHHHHHHHhhccCcEEEEc-CCCCCc-HHHHHHhhccCCCceEEeeCCCCCC---CCceEEEeecCHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQNGVQALFG-PSDALL-GPHVQSICEALDVPHMESRLDLELN---SKEFSVNLYPSQKL 81 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~~GV~AI~G-P~s~~~-~~~vqsic~~~~IP~i~~~~~~~~~---~~~f~vnl~P~~~~ 81 (124)
+.....+++-+...+.+-.++++++-+|+- |.+... ...++. +...+||+|.+....... .....-.+.+++..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~-~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~ 114 (309)
T 2fvy_A 36 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK-ARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKE 114 (309)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHH-HHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHH-HHHCCCcEEEecCCCCcccccccCccEEEecCHHH
Confidence 444444445554233344455678877664 444332 345554 456899999886533211 00123346677666
Q ss_pred HHHHHHh
Q psy17128 82 LNAAFKD 88 (124)
Q Consensus 82 ~~~Ai~d 88 (124)
..+..++
T Consensus 115 ~g~~~~~ 121 (309)
T 2fvy_A 115 SGIIQGD 121 (309)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665555
No 85
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=49.56 E-value=8.1 Score=28.98 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=27.9
Q ss_pred Hhhcc-CcEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 25 RQLQN-GVQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 25 ~ll~~-GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
..+.+ .|+.|+||-.+-=+-.-+.+++.+++|||++
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 34443 4788999988766666677899999999986
No 86
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=43.95 E-value=87 Score=22.49 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=44.8
Q ss_pred eEEEecCC--chHHHHHHHHHhhccCcEEEE-cCCC-CCcHHHHHHhhccCCCceEEeeCCCC---CCCCceEEEeecCH
Q psy17128 7 LVEVNVNT--GLEEEESVMCRQLQNGVQALF-GPSD-ALLGPHVQSICEALDVPHMESRLDLE---LNSKEFSVNLYPSQ 79 (124)
Q Consensus 7 I~~i~~~~--~f~~~~~~~C~ll~~GV~AI~-GP~s-~~~~~~vqsic~~~~IP~i~~~~~~~---~~~~~f~vnl~P~~ 79 (124)
+.....++ +.+...+.+-.++++++-+|+ .|.+ ......++.+. .+||+|.+..... .......-.+.+++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~--~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~ 115 (304)
T 3o1i_D 38 LRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSWV--GNTPVFATVNQLDLDEEQSTLLKGEVGVDW 115 (304)
T ss_dssp EEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHHT--TTSCEEECSSCCCCCTTTGGGEEEECCCCH
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHc--CCCCEEEecCCCcccccCCCceEEEEecCH
Confidence 34444444 555534445555667776666 5544 33345566654 8999998843321 01223345567777
Q ss_pred HHHHHHHHh
Q psy17128 80 KLLNAAFKD 88 (124)
Q Consensus 80 ~~~~~Ai~d 88 (124)
....+..++
T Consensus 116 ~~~g~~a~~ 124 (304)
T 3o1i_D 116 YWMGYEAGK 124 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666666
No 87
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=41.62 E-value=21 Score=25.78 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=28.0
Q ss_pred hccCcEEEEcCCCCCcHHHHHHhhccCCCceEE
Q psy17128 27 LQNGVQALFGPSDALLGPHVQSICEALDVPHME 59 (124)
Q Consensus 27 l~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~ 59 (124)
|++-+++|.||..+.-..+-..++..+++|++.
T Consensus 4 m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 4 MKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 345689999999998888888899999999995
No 88
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=41.15 E-value=1.1e+02 Score=22.98 Aligned_cols=92 Identities=10% Similarity=0.056 Sum_probs=44.0
Q ss_pred EecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhH
Q psy17128 10 VNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDV 89 (124)
Q Consensus 10 i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~ 89 (124)
...+++-+...+.+-.++++++-+|+-.........++.+ ...+||+|.+....... ..+ -.+..++..-.+..++.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l-~~~~iPvV~i~~~~~~~-~~~-~~V~~D~~~~~~~a~~~ 178 (348)
T 3bil_A 102 TNSNEDATTMSGSLEFLTSHGVDGIICVPNEECANQLEDL-QKQGMPVVLVDRELPGD-STI-PTATSNPQPGIAAAVEL 178 (348)
T ss_dssp EECTTCHHHHHHHHHHHHHTTCSCEEECCCGGGHHHHHHH-HHC-CCEEEESSCCSCC--CC-CEEEEECHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHH-HhCCCCEEEEcccCCCC-CCC-CEEEeChHHHHHHHHHH
Confidence 3344444442233334446677666532222223455543 45799999886543210 111 12334444444444442
Q ss_pred HHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 90 IRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 90 ~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
|++ .|-++++++...
T Consensus 179 -----------------L~~-~G~~~I~~i~~~ 193 (348)
T 3bil_A 179 -----------------LAH-NNALPIGYLSGP 193 (348)
T ss_dssp -----------------HHH-TTCCSEEEECCC
T ss_pred -----------------HHH-CCCCeEEEEeCC
Confidence 333 478888887643
No 89
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=40.68 E-value=21 Score=25.20 Aligned_cols=31 Identities=32% Similarity=0.373 Sum_probs=26.0
Q ss_pred CcEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 30 GVQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 30 GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
-+++|.||+.+-=+-...-++..+++|++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4899999999877777777888889999874
No 90
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=39.20 E-value=46 Score=24.24 Aligned_cols=49 Identities=6% Similarity=-0.004 Sum_probs=35.1
Q ss_pred CeeEEEecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 5 PSLVEVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 5 ~~I~~i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
.+|+.....++-+. ...+-++.++|+.+|+|+ ..+.+++.++++|.+..
T Consensus 118 ~~i~~~~~~~~~e~-~~~i~~l~~~G~~vvVG~------~~~~~~A~~~Gl~~vli 166 (196)
T 2q5c_A 118 VKIKEFLFSSEDEI-TTLISKVKTENIKIVVSG------KTVTDEAIKQGLYGETI 166 (196)
T ss_dssp CEEEEEEECSGGGH-HHHHHHHHHTTCCEEEEC------HHHHHHHHHTTCEEEEC
T ss_pred CceEEEEeCCHHHH-HHHHHHHHHCCCeEEECC------HHHHHHHHHcCCcEEEE
Confidence 35666666666665 555666667899999994 45678899999987743
No 91
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=37.58 E-value=86 Score=22.74 Aligned_cols=91 Identities=7% Similarity=0.051 Sum_probs=47.2
Q ss_pred eEEEecCCchHHHHHHHHH-hhccCcEEEE-cCCCCCcHHHHHHhhccCCCceEEeeCCCCCC-CCceEEEeecCHHHHH
Q psy17128 7 LVEVNVNTGLEEEESVMCR-QLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELN-SKEFSVNLYPSQKLLN 83 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~-ll~~GV~AI~-GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~-~~~f~vnl~P~~~~~~ 83 (124)
+.-...+++-+. .....+ ++++++-+|+ .|..... ........+||+|.+....... ... .+..++..-.
T Consensus 47 ~~~~~~~~~~~~-~~~~~~~l~~~~vdGiIi~~~~~~~---~~~~~~~~~iPvV~~~~~~~~~~~~~---~V~~D~~~~g 119 (301)
T 3miz_A 47 ILIANTGGSSER-EVEIWKMFQSHRIDGVLYVTMYRRI---VDPESGDVSIPTVMINCRPQTRELLP---SIEPDDYQGA 119 (301)
T ss_dssp EEEEECTTCHHH-HHHHHHHHHHTTCSEEEEEEEEEEE---CCCCCTTCCCCEEEEEEECSSTTSSC---EEEECHHHHH
T ss_pred EEEEeCCCChHH-HHHHHHHHHhCCCCEEEEecCCccH---HHHHHHhCCCCEEEECCCCCCCCCCC---EEeeChHHHH
Confidence 334444445554 334444 4456665554 2322221 2234566799999886533212 112 2445655555
Q ss_pred HHHHhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 84 AAFKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 84 ~Ai~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
+..++ .+...|-++++++...
T Consensus 120 ~~a~~------------------~L~~~G~~~I~~i~~~ 140 (301)
T 3miz_A 120 RDLTR------------------YLLERGHRRIGYIRLN 140 (301)
T ss_dssp HHHHH------------------HHHTTTCCSEEEEECC
T ss_pred HHHHH------------------HHHHcCCCeEEEEecC
Confidence 55555 3333588888887643
No 92
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=37.50 E-value=27 Score=24.13 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=25.6
Q ss_pred cEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 31 VQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 31 V~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
+++|.||..+-=+.+-..++..+++|++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 789999999877777788888899999974
No 93
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=37.10 E-value=31 Score=23.51 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=28.1
Q ss_pred hhccC-cEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 26 QLQNG-VQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 26 ll~~G-V~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
+|.++ +++|.||..+-=+.....+++.++.|++..
T Consensus 5 ~m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 5 KLKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp HHTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45554 788899999777777788888899999965
No 94
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*
Probab=36.10 E-value=27 Score=28.28 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=22.0
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
||||.||..+++-|-+.||-++..+
T Consensus 153 sCTTn~Lap~lk~L~d~fGI~~~~m 177 (335)
T 1obf_O 153 SCTTNCLAPLVKPLNDKLGLQDGLM 177 (335)
T ss_dssp CHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCeeEEEE
Confidence 6999999999988888999998754
No 95
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=35.83 E-value=1.3e+02 Score=22.32 Aligned_cols=81 Identities=6% Similarity=0.010 Sum_probs=44.3
Q ss_pred eEEEecCCchHHHHHHHHHhhc--cCcEEEE-cCCCCCcHHHHHHhhccCCCceEEeeCCCCCCC-----------CceE
Q psy17128 7 LVEVNVNTGLEEEESVMCRQLQ--NGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNS-----------KEFS 72 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~ll~--~GV~AI~-GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~-----------~~f~ 72 (124)
+.....+.+-+...+.+-+++. +|+-+|+ -|........+ ..+...+||+|.+........ ..+.
T Consensus 37 ~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~-~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (350)
T 3h75_A 37 LRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQIL-RLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWI 115 (350)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHH-HHHTTSCCEEEEEESCCCTTTC------------CE
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHH-HHHHhCCCcEEEEcCCCChHHHhhhcCCchhcccee
Confidence 3334444444443445666676 4776655 34233333444 456778999999875433211 0123
Q ss_pred EEeecCHHHHHHHHHh
Q psy17128 73 VNLYPSQKLLNAAFKD 88 (124)
Q Consensus 73 vnl~P~~~~~~~Ai~d 88 (124)
-.+.+++....+..++
T Consensus 116 ~~V~~D~~~~g~~a~~ 131 (350)
T 3h75_A 116 GSMVGDDEEAGYRMLK 131 (350)
T ss_dssp EEEECCHHHHHHHHHH
T ss_pred eeecCChHHHHHHHHH
Confidence 4566777766666666
No 96
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=34.84 E-value=1.3e+02 Score=21.89 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=28.0
Q ss_pred eEEEecCCchHHHHHHHHH-hhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 7 LVEVNVNTGLEEEESVMCR-QLQNGVQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 7 I~~i~~~~~f~~~~~~~C~-ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
+...+.+.+-+. .+...+ +.++++-+|+...+.. ...+... ..++|+|...
T Consensus 39 l~~~~~~~~~~~-~~~~~~~l~~~~vDgII~~~~~~-~~~~~~~--~~~iPvV~~~ 90 (295)
T 3lft_A 39 IDFMNSEGDQSK-VATMSKQLVANGNDLVVGIATPA-AQGLASA--TKDLPVIMAA 90 (295)
T ss_dssp EEEEECTTCHHH-HHHHHHHHTTSSCSEEEEESHHH-HHHHHHH--CSSSCEEEES
T ss_pred EEEecCCCCHHH-HHHHHHHHHhcCCCEEEECCcHH-HHHHHHc--CCCCCEEEEe
Confidence 444455556665 344444 4466777777543322 2223322 4799999865
No 97
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Probab=33.73 E-value=28 Score=28.32 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=22.1
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
||||.||..+++-|-+.||-++..+
T Consensus 160 sCTTn~Lap~lk~L~d~fGI~~~~m 184 (345)
T 2b4r_O 160 SCTTNCLAPLAKVINDRFGIVEGLM 184 (345)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred chHHHHHHHHHHHHHHhcCeeEEEE
Confidence 7999999999988888999998764
No 98
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=33.45 E-value=38 Score=24.51 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=27.5
Q ss_pred cCcEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 29 NGVQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 29 ~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
.| ++|+||+..-=+..+..+++..+.|.+.+.
T Consensus 50 ~g-~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 50 KG-VLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp SE-EEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred Ce-EEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 46 789999998888888999999999988765
No 99
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=33.17 E-value=35 Score=23.88 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=27.8
Q ss_pred CcEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 30 GVQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 30 GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
..++|.||+.+-=+.....++..++.|++...
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 38999999998888888999999999999753
No 100
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=32.99 E-value=37 Score=24.97 Aligned_cols=35 Identities=9% Similarity=0.086 Sum_probs=27.6
Q ss_pred hccC-cEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 27 LQNG-VQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 27 l~~G-V~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
++.+ .+.|.||..+-=+-..+.+++.+++||++..
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 3344 6888899997777777888888999999863
No 101
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=32.77 E-value=1.4e+02 Score=21.61 Aligned_cols=81 Identities=14% Similarity=0.068 Sum_probs=43.8
Q ss_pred HHHHHhh-ccCcEEEE-cCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHhhhhHHH
Q psy17128 21 SVMCRQL-QNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKK 98 (124)
Q Consensus 21 ~~~C~ll-~~GV~AI~-GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~ 98 (124)
....+.+ +++|-+|+ -|... ....++. ....+||+|.+.......... ...+..++..-.+..++.
T Consensus 58 ~~~~~~l~~~~vdGiI~~~~~~-~~~~~~~-l~~~~iPvV~i~~~~~~~~~~-~~~V~~D~~~~~~~a~~~--------- 125 (295)
T 3hcw_A 58 DEVYKMIKQRMVDAFILLYSKE-NDPIKQM-LIDESMPFIVIGKPTSDIDHQ-FTHIDNDNILASENLTRH--------- 125 (295)
T ss_dssp HHHHHHHHTTCCSEEEESCCCT-TCHHHHH-HHHTTCCEEEESCCCSSGGGG-SCEEEECHHHHHHHHHHH---------
T ss_pred HHHHHHHHhCCcCEEEEcCccc-ChHHHHH-HHhCCCCEEEECCCCccccCC-ceEEecCcHHHHHHHHHH---------
Confidence 3444444 56776665 33332 2244443 556799999886543321101 123445655555555552
Q ss_pred HhhHHHHHHHhhcCceEEEEEeec
Q psy17128 99 LLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 99 ~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
|++ .|-++++++...
T Consensus 126 --------L~~-~G~~~I~~i~~~ 140 (295)
T 3hcw_A 126 --------VIE-QGVDELIFITEK 140 (295)
T ss_dssp --------HHH-HCCSEEEEEEES
T ss_pred --------HHH-cCCccEEEEcCC
Confidence 333 588999988754
No 102
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=31.89 E-value=36 Score=25.14 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=26.3
Q ss_pred CcEEEEcCCCCCcHHHHHHhhccCCCceEE
Q psy17128 30 GVQALFGPSDALLGPHVQSICEALDVPHME 59 (124)
Q Consensus 30 GV~AI~GP~s~~~~~~vqsic~~~~IP~i~ 59 (124)
-+++|.||+.+-=+.+..-+++.++++++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 489999999988888888889889998885
No 103
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}
Probab=31.70 E-value=32 Score=27.94 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=21.8
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
||||.||..+++-|-+.||-++..+
T Consensus 151 sCTTn~Lap~lk~L~d~fGI~~~~m 175 (342)
T 2ep7_A 151 SCTTNCLAPCVKVLNEAFGVEKGYM 175 (342)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHcCeeEEEE
Confidence 6999999999988888999988754
No 104
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=31.55 E-value=1.4e+02 Score=21.39 Aligned_cols=78 Identities=6% Similarity=-0.001 Sum_probs=42.5
Q ss_pred HHHHhh-ccCcEEEE-cCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHhhhhHHHH
Q psy17128 22 VMCRQL-QNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKKL 99 (124)
Q Consensus 22 ~~C~ll-~~GV~AI~-GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~~ 99 (124)
..-+++ ++++-+|+ -|... ....++. ....+||+|.+........ + -.+..++..-.+..++
T Consensus 57 ~~~~~l~~~~vdgiIi~~~~~-~~~~~~~-l~~~~iPvV~i~~~~~~~~--~-~~V~~D~~~~g~~a~~----------- 120 (288)
T 3gv0_A 57 PIRYILETGSADGVIISKIEP-NDPRVRF-MTERNMPFVTHGRSDMGIE--H-AFHDFDNEAYAYEAVE----------- 120 (288)
T ss_dssp HHHHHHHHTCCSEEEEESCCT-TCHHHHH-HHHTTCCEEEESCCCSSCC--C-EEEEECHHHHHHHHHH-----------
T ss_pred HHHHHHHcCCccEEEEecCCC-CcHHHHH-HhhCCCCEEEECCcCCCCC--C-cEEEeCcHHHHHHHHH-----------
Confidence 344444 45665554 23332 2244444 4567999998865432211 1 2345666655555555
Q ss_pred hhHHHHHHHhhcCceEEEEEeec
Q psy17128 100 LNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 100 l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
-+...|-++++++...
T Consensus 121 -------~L~~~G~~~I~~i~~~ 136 (288)
T 3gv0_A 121 -------RLAQCGRKRIAVIVPP 136 (288)
T ss_dssp -------HHHHTTCCEEEEECCC
T ss_pred -------HHHHCCCCeEEEEcCC
Confidence 3334588899888654
No 105
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*
Probab=31.31 E-value=36 Score=27.26 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=22.2
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
||||.||..+++-|-+.||-++..+
T Consensus 148 sCtTn~lap~lk~L~~~fgI~~~~m 172 (331)
T 2g82_O 148 SCTTNSLAPVMKVLEEAFGVEKALM 172 (331)
T ss_dssp CHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ChHHHHHHHHHHHHHHhcCccEEEE
Confidence 6999999999999999999887654
No 106
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=30.67 E-value=34 Score=23.00 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=25.8
Q ss_pred EEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 32 QALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 32 ~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
+.++||+-...-+-++..++..+||.....
T Consensus 56 vvLLgPQV~y~~~~ik~~~~~~~ipV~vI~ 85 (108)
T 3nbm_A 56 LIILAPQVRSYYREMKVDAERLGIQIVATR 85 (108)
T ss_dssp EEEECGGGGGGHHHHHHHHTTTTCEEEECC
T ss_pred EEEEChHHHHHHHHHHHHhhhcCCcEEEeC
Confidence 567899999999999999999999987653
No 107
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=29.50 E-value=1.5e+02 Score=21.06 Aligned_cols=71 Identities=8% Similarity=0.028 Sum_probs=39.8
Q ss_pred hccCcEEEE-cCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHhhhhHHHHhhHHHH
Q psy17128 27 LQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKKLLNAAFK 105 (124)
Q Consensus 27 l~~GV~AI~-GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~~l~~a~~ 105 (124)
.++++-+|+ .|.+... ..+... ...+||+|.+..+.+ .+ -.+..++..-.+..++
T Consensus 65 ~~~~vdgiIi~~~~~~~-~~~~~~-~~~~iPvV~~~~~~~----~~-~~V~~D~~~~~~~a~~----------------- 120 (289)
T 3g85_A 65 KENSFDAAIIANISNYD-LEYLNK-ASLTLPIILFNRLSN----KY-SSVNVDNYKMGEKASL----------------- 120 (289)
T ss_dssp TTTCCSEEEESSCCHHH-HHHHHH-CCCSSCEEEESCCCS----SS-EEEEECHHHHHHHHHH-----------------
T ss_pred hccCCCEEEEecCCccc-HHHHHh-ccCCCCEEEECCCCC----CC-CEEEeCHHHHHHHHHH-----------------
Confidence 355666665 4433332 333332 367999998865422 12 2355666555555555
Q ss_pred HHHhhcCceEEEEEeec
Q psy17128 106 DVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 106 ~li~~~~W~~v~ivYe~ 122 (124)
.+...|-++++++..+
T Consensus 121 -~L~~~G~~~i~~i~~~ 136 (289)
T 3g85_A 121 -LFAKKRYKSAAAILTE 136 (289)
T ss_dssp -HHHHTTCCBCEEEECC
T ss_pred -HHHHcCCCEEEEEeCC
Confidence 3334588888888754
No 108
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1
Probab=29.14 E-value=50 Score=26.16 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=25.9
Q ss_pred HHhhhhHHHHhhHHHHHHHhhcCceEEEE-Eee
Q psy17128 90 IRFLNWTKKLLNAAFKDVIRFLNWTKVAI-VYE 121 (124)
Q Consensus 90 ~~~~~~~~~~l~~a~~~li~~~~W~~v~i-vYe 121 (124)
|.==|||++++..+++-|.+.|+-++..+ .|.
T Consensus 135 Ianp~C~tt~l~~~l~pL~~~~gI~~~~vtt~~ 167 (337)
T 1cf2_P 135 TRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIVR 167 (337)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHCEEEEEEEEEE
T ss_pred EEcCCcHHHHHHHHHHHHHHhcCcceeEEEEEE
Confidence 33348999999999999999999998766 443
No 109
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}
Probab=28.94 E-value=31 Score=27.59 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=25.6
Q ss_pred hHHHhhhhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 88 DVIRFLNWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 88 d~~~~~~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
.+|.=-||||.||..+++-|=+.||-++..+
T Consensus 137 ~iIsn~sCtT~~lap~lk~L~~~fgI~~~~v 167 (343)
T 2yyy_A 137 DYVRVVSCNTTGLCRILYAINSIADIKKARI 167 (343)
T ss_dssp SEEEECCHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CEEeccchhhHHHHHHHHHHHHHcCceEEEE
Confidence 4555678999999999988888899988765
No 110
>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*
Probab=28.38 E-value=44 Score=26.90 Aligned_cols=27 Identities=7% Similarity=-0.095 Sum_probs=23.7
Q ss_pred hhhhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 92 FLNWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 92 ~~~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
==||+++++.-+++-|.+.||.+++.+
T Consensus 150 nPgC~tt~~~l~L~PL~~~~gi~~v~v 176 (359)
T 4dpl_A 150 TPLCTAQGAAIPLGAIFKDYKMDGAFI 176 (359)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcEEEE
Confidence 348999999999999999999987765
No 111
>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*
Probab=28.38 E-value=44 Score=26.90 Aligned_cols=27 Identities=7% Similarity=-0.095 Sum_probs=23.7
Q ss_pred hhhhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 92 FLNWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 92 ~~~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
==||+++++.-+++-|.+.||.+++.+
T Consensus 150 nPgC~tt~~~l~L~PL~~~~gi~~v~v 176 (359)
T 4dpk_A 150 TPLCTAQGAAIPLGAIFKDYKMDGAFI 176 (359)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcEEEE
Confidence 348999999999999999999987765
No 112
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=27.80 E-value=1.7e+02 Score=20.94 Aligned_cols=82 Identities=10% Similarity=0.004 Sum_probs=46.4
Q ss_pred EecCCchHHHHHHHHH-hhccCcEEEE-cCCCCCcHHHHHHhhccCCCceEEeeCC-CCCCCCceEEEeecCHHHHHHHH
Q psy17128 10 VNVNTGLEEEESVMCR-QLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLD-LELNSKEFSVNLYPSQKLLNAAF 86 (124)
Q Consensus 10 i~~~~~f~~~~~~~C~-ll~~GV~AI~-GP~s~~~~~~vqsic~~~~IP~i~~~~~-~~~~~~~f~vnl~P~~~~~~~Ai 86 (124)
....++-+. .....+ ++++++-+|+ -| +.++. ....+||+|.+... ... ..+ ...+++..-.+..
T Consensus 47 ~~~~~~~~~-~~~~~~~l~~~~vdgiIi~~------~~~~~-~~~~~iPvV~~~~~~~~~--~~~--~V~~D~~~~g~~a 114 (277)
T 3hs3_A 47 FSTNSDVKK-YQNAIINFENNNVDGIITSA------FTIPP-NFHLNTPLVMYDSANIND--DIV--RIVSNNTKGGKES 114 (277)
T ss_dssp ECSSCCHHH-HHHHHHHHHHTTCSEEEEEC------CCCCT-TCCCSSCEEEESCCCCCS--SSE--EEEECHHHHHHHH
T ss_pred EeCCCChHH-HHHHHHHHHhCCCCEEEEcc------hHHHH-HHhCCCCEEEEcccccCC--CCE--EEEEChHHHHHHH
Confidence 344444444 333344 4456765555 33 11222 46679999988654 331 223 6677776666666
Q ss_pred HhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 87 KDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 87 ~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
++. |+ .|-++++++...
T Consensus 115 ~~~-----------------L~--~G~~~I~~i~~~ 131 (277)
T 3hs3_A 115 IKL-----------------LS--KKIEKVLIQHWP 131 (277)
T ss_dssp HHT-----------------SC--TTCCEEEEEESC
T ss_pred HHH-----------------HH--hCCCEEEEEeCC
Confidence 652 33 788899888654
No 113
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=27.55 E-value=54 Score=21.88 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=25.6
Q ss_pred CcEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 30 GVQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 30 GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
-+++|.||+.+-=+....-++..++.|++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 4789999999877777788888888888864
No 114
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=27.26 E-value=66 Score=20.25 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=27.3
Q ss_pred HHHHHhhccC-cEEEE--cCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 21 SVMCRQLQNG-VQALF--GPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 21 ~~~C~ll~~G-V~AI~--GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
+.....+++| +.-++ .=-++.....+..+|...+||++.+.
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 3456667665 33333 33334667788999999999999764
No 115
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=26.97 E-value=56 Score=24.12 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=27.3
Q ss_pred cCcEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 29 NGVQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 29 ~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
.| ++|+||+..-=+..++.+++....|.+.+.
T Consensus 74 ~g-vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 74 KG-VLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp CE-EEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred Ce-EEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 46 789999998888888999999888988765
No 116
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=26.52 E-value=1.3e+02 Score=19.81 Aligned_cols=47 Identities=11% Similarity=0.232 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhhc-cCcEEE-Ec---CCC------CCcHHHHHHhhccCCCceEEeeC
Q psy17128 16 LEEEESVMCRQLQ-NGVQAL-FG---PSD------ALLGPHVQSICEALDVPHMESRL 62 (124)
Q Consensus 16 f~~~~~~~C~ll~-~GV~AI-~G---P~s------~~~~~~vqsic~~~~IP~i~~~~ 62 (124)
|....+.+.+.+. .|...+ +| |.. ......+..+|.+.++|++....
T Consensus 88 ~~~~~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~~ 145 (185)
T 3hp4_A 88 MQTNLTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFFM 145 (185)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCTT
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcchh
Confidence 3443445555554 355444 56 322 13467889999999999997643
No 117
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=26.47 E-value=82 Score=23.71 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=32.9
Q ss_pred eeEEEecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 6 SLVEVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 6 ~I~~i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
+|+.....++=+. ...+-++.++|+-+|+|+ ..+.+++.++++|.+..
T Consensus 131 ~i~~~~~~~~ee~-~~~i~~l~~~G~~vVVG~------~~~~~~A~~~Gl~~vlI 178 (225)
T 2pju_A 131 RLDQRSYITEEDA-RGQINELKANGTEAVVGA------GLITDLAEEAGMTGIFI 178 (225)
T ss_dssp CEEEEEESSHHHH-HHHHHHHHHTTCCEEEES------HHHHHHHHHTTSEEEES
T ss_pred ceEEEEeCCHHHH-HHHHHHHHHCCCCEEECC------HHHHHHHHHcCCcEEEE
Confidence 3555555554444 445555667899999994 45678899999998754
No 118
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=25.93 E-value=54 Score=21.64 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=23.9
Q ss_pred cEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 31 VQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 31 V~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
+++|.||+.+-=+...+.+++.++.|++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 578889988777777777888888888864
No 119
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=25.89 E-value=37 Score=25.83 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=25.1
Q ss_pred cEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 31 VQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 31 V~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
-.+|+||..+-=+-.-+.+++.+++|||++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 468999988777777778899999999986
No 120
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=25.11 E-value=68 Score=22.40 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=26.3
Q ss_pred CcEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 30 GVQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 30 GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
-+++|.||..+.-+.+...++..+++|++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 3789999999887777788888899999975
No 121
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=24.56 E-value=54 Score=22.20 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=26.1
Q ss_pred cEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 31 VQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 31 V~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
.++|.||..+-=+.+-+.++..+++|++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 6889999998777777888999999999753
No 122
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=24.46 E-value=1.3e+02 Score=22.97 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=28.5
Q ss_pred cCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeC
Q psy17128 29 NGVQALFGPSDALLGPHVQSICEALDVPHMESRL 62 (124)
Q Consensus 29 ~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~ 62 (124)
.+.+.+.||+..-=..+...+++.++.|++.+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence 3568889999987778888999999999998753
No 123
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=24.44 E-value=70 Score=22.36 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=23.9
Q ss_pred EEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 32 QALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 32 ~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
++|.||..+-=+...+.++..+++|+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 67889998776667777888999999976
No 124
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=24.40 E-value=49 Score=24.97 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=26.9
Q ss_pred CcEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 30 GVQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 30 GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
-+++|.||+.+-=+.+...++..++.+++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4799999999888888888899999999874
No 125
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Probab=24.13 E-value=53 Score=26.97 Aligned_cols=26 Identities=12% Similarity=-0.015 Sum_probs=22.4
Q ss_pred hhhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 93 LNWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 93 ~~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
=||||.||..+++-|-+.||-++..+
T Consensus 172 aSCTTn~Lap~lkvL~d~fGI~~g~m 197 (356)
T 3hja_A 172 ASCTTNCLAPLAKVLHESFGIEQGLM 197 (356)
T ss_dssp CCHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred CccchhhhhHhHHHHHHhcCeEEEEE
Confidence 37999999999998889999988754
No 126
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=23.97 E-value=2.2e+02 Score=21.03 Aligned_cols=89 Identities=12% Similarity=0.013 Sum_probs=47.3
Q ss_pred EecCCchHHHHHHHHHhhccCcEEEE-cCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHh
Q psy17128 10 VNVNTGLEEEESVMCRQLQNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKD 88 (124)
Q Consensus 10 i~~~~~f~~~~~~~C~ll~~GV~AI~-GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d 88 (124)
...+.+-+...+.+-.++++++-+|+ -|.... ...++ .....+||+|.+..... .. .. ....++..-.+..++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~-~~~~~-~l~~~~iPvV~~~~~~~-~~--~~-~V~~D~~~~~~~a~~ 171 (339)
T 3h5o_A 98 GNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA-EPFER-ILSQHALPVVYMMDLAD-DG--RC-CVGFSQEDAGAAITR 171 (339)
T ss_dssp EECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC-TTHHH-HHHHTTCCEEEEESCCS-SS--CC-EEECCHHHHHHHHHH
T ss_pred EeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC-HHHHH-HHhcCCCCEEEEeecCC-CC--Ce-EEEECHHHHHHHHHH
Confidence 34444444423334444566776654 333322 23333 45677999998854322 11 11 556776655555555
Q ss_pred HHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 89 VIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 89 ~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
-+...|-+++.++...
T Consensus 172 ------------------~L~~~G~~~I~~i~~~ 187 (339)
T 3h5o_A 172 ------------------HLLSRGKRRIGFLGAQ 187 (339)
T ss_dssp ------------------HHHHTTCCSEEEEEES
T ss_pred ------------------HHHHCCCCeEEEEeCC
Confidence 2233488888888654
No 127
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=23.94 E-value=2.1e+02 Score=20.70 Aligned_cols=79 Identities=10% Similarity=0.072 Sum_probs=43.9
Q ss_pred HHHHHhh-ccCcEEEE-cCCCCCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHhhhhHHH
Q psy17128 21 SVMCRQL-QNGVQALF-GPSDALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKK 98 (124)
Q Consensus 21 ~~~C~ll-~~GV~AI~-GP~s~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~ 98 (124)
....+.+ ++++-+|+ -|.... ...++. ....+||+|.+......... -.+..++..-.+..++
T Consensus 73 ~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~-l~~~~iPvV~i~~~~~~~~~---~~V~~D~~~~g~~a~~---------- 137 (305)
T 3huu_A 73 HEVKTMIQSKSVDGFILLYSLKD-DPIEHL-LNEFKVPYLIVGKSLNYENI---IHIDNDNIDAAYQLTQ---------- 137 (305)
T ss_dssp HHHHHHHHTTCCSEEEESSCBTT-CHHHHH-HHHTTCCEEEESCCCSSTTC---CEEECCHHHHHHHHHH----------
T ss_pred HHHHHHHHhCCCCEEEEeCCcCC-cHHHHH-HHHcCCCEEEECCCCcccCC---cEEEeCHHHHHHHHHH----------
Confidence 3444444 56776655 333322 244443 55679999988754421111 2345666555555555
Q ss_pred HhhHHHHHHHhhcCceEEEEEeec
Q psy17128 99 LLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 99 ~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
-+...|=++++++...
T Consensus 138 --------~L~~~G~~~I~~i~~~ 153 (305)
T 3huu_A 138 --------YLYHLGHRHILFLQES 153 (305)
T ss_dssp --------HHHHTTCCSEEEEEES
T ss_pred --------HHHHCCCCeEEEEcCC
Confidence 2333477888888654
No 128
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=23.39 E-value=2e+02 Score=20.37 Aligned_cols=58 Identities=5% Similarity=-0.023 Sum_probs=32.8
Q ss_pred HHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCHHHHHHHHHhHHHhhhhHHHHhhHHHHHHHhhcCceEEEEEeec
Q psy17128 43 GPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQKLLNAAFKDVIRFLNWTKKLLNAAFKDVIRFLNWTKVAIVYEE 122 (124)
Q Consensus 43 ~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~~~~~~Ai~d~~~~~~~~~~~l~~a~~~li~~~~W~~v~ivYe~ 122 (124)
...+..+ ...+||+|.+...... .. .-.+..++..-.+..++. |++ .|-++++++..+
T Consensus 70 ~~~~~~l-~~~~iPvV~~~~~~~~--~~-~~~V~~D~~~~~~~a~~~-----------------L~~-~G~~~i~~i~~~ 127 (277)
T 3cs3_A 70 TKEIEKF-AERGHSIVVLDRTTEH--RN-IRQVLLDNRGGATQAIEQ-----------------FVN-VGSKKVLLLSGP 127 (277)
T ss_dssp HHHHHHH-HHTTCEEEESSSCCCS--TT-EEEEEECHHHHHHHHHHH-----------------HHH-TTCSCEEEEECC
T ss_pred HHHHHHH-HhcCCCEEEEecCCCC--CC-CCEEEeCcHHHHHHHHHH-----------------HHH-cCCceEEEEeCC
Confidence 3555544 4589999987653321 12 234556665555555552 333 477888877643
No 129
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*
Probab=23.33 E-value=61 Score=26.30 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=21.9
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
||||.||..+++-|=+.||-++..+
T Consensus 152 sCTTn~Lap~lk~L~d~fGI~~g~m 176 (335)
T 3doc_A 152 SCTTNCLAPVAQVLNDTIGIEKGFM 176 (335)
T ss_dssp CHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred chhhhhhHHhHHHHHHHcCEEEEEE
Confidence 6999999999988889999988654
No 130
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=23.30 E-value=68 Score=21.44 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=25.6
Q ss_pred cCcEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 29 NGVQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 29 ~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
.++++|.|+..+-=+..-+-+++.+++|++...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 368899999887666666777888999999753
No 131
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=22.97 E-value=66 Score=24.19 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=28.1
Q ss_pred cCcEEEEcCCCCCcHHHHHHhhccCCCceEEeeC
Q psy17128 29 NGVQALFGPSDALLGPHVQSICEALDVPHMESRL 62 (124)
Q Consensus 29 ~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~~ 62 (124)
.| ++++||...-=+..+..+++..+.+.+.+..
T Consensus 45 ~G-vlL~Gp~GtGKTtLakala~~~~~~~i~i~g 77 (274)
T 2x8a_A 45 AG-VLLAGPPGCGKTLLAKAVANESGLNFISVKG 77 (274)
T ss_dssp SE-EEEESSTTSCHHHHHHHHHHHTTCEEEEEET
T ss_pred Ce-EEEECCCCCcHHHHHHHHHHHcCCCEEEEEc
Confidence 57 8999999988888888999999888887754
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=22.87 E-value=1.1e+02 Score=20.71 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=26.6
Q ss_pred hccC-cEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 27 LQNG-VQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 27 l~~G-V~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
+..| +++|+||+.+-=+-....++...+.+.+.+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~ 41 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEc
Confidence 4455 8999999997777777788887777766554
No 133
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=22.74 E-value=61 Score=23.41 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=26.3
Q ss_pred CcEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 30 GVQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 30 GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
.+++|+||..+-=+-.+..+++.+++++++.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~ 58 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSS 58 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4899999999888888888998888887753
No 134
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=22.73 E-value=65 Score=21.81 Aligned_cols=34 Identities=6% Similarity=-0.114 Sum_probs=28.2
Q ss_pred ccCcEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 28 QNGVQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 28 ~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
....+.|.||+.+-=+...+.+++.++.+++...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 3457889999998888888889999999999763
No 135
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=22.63 E-value=89 Score=21.59 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=22.1
Q ss_pred cEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 31 VQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 31 V~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
+++|.||..+-=+-...-+++ ++.|++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 689999998666666666665 89999864
No 136
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*
Probab=22.63 E-value=59 Score=26.10 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=22.0
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
||||.||..+++-|.+.|+-++..+
T Consensus 152 sCtTn~lap~lk~L~~~fgI~~~~m 176 (337)
T 1rm4_O 152 SCTTNCLAPFVKVLDQKFGIIKGTM 176 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred ChHHHHHHHHHHHHHHhcCeeEEEE
Confidence 7999999999999989999887655
No 137
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=22.59 E-value=68 Score=21.70 Aligned_cols=32 Identities=13% Similarity=-0.088 Sum_probs=26.5
Q ss_pred CcEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 30 GVQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 30 GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
-.+.+.||+.+-=+.+-..++..++.|++...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 36789999998777788888999999999753
No 138
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=22.56 E-value=3.6e+02 Score=23.00 Aligned_cols=54 Identities=19% Similarity=0.162 Sum_probs=34.9
Q ss_pred HHHhhc-cCcEEEEcCCC--CCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecCH
Q psy17128 23 MCRQLQ-NGVQALFGPSD--ALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPSQ 79 (124)
Q Consensus 23 ~C~ll~-~GV~AI~GP~s--~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~~ 79 (124)
+-+.++ -.++.|+|-|- ...+.++... ..++|.+.+..++.. ...|.+.+.-.-
T Consensus 387 a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a--~~~~p~ViIN~ept~-~~~~Dl~l~G~c 443 (492)
T 4iao_A 387 IREDILECDLLICIGTSLKVAPVSEIVNMV--PSHVPQVLINRDPVK-HAEFDLSLLGYC 443 (492)
T ss_dssp HHHHTTTCSEEEEESCCCCEETGGGHHHHS--BTTSCEEEEESSCCT-TSCCSEEEESCH
T ss_pred HHHHHhhCCEEEEeccCCCccchhhHHHHH--hcCCcEEEEcCCCCC-CCCccEEEeCCH
Confidence 333444 47888999876 5566777643 357999988876543 235667776663
No 139
>3r8s_E 50S ribosomal protein L4; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ...
Probab=22.46 E-value=44 Score=25.17 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=17.8
Q ss_pred HHHHHHHhhcCceEEEEEeecC
Q psy17128 102 AAFKDVIRFLNWTKVAIVYEED 123 (124)
Q Consensus 102 ~a~~~li~~~~W~~v~ivYe~d 123 (124)
+.++++++.++|+++-+|+++.
T Consensus 132 K~~~~~L~~l~~~~~LiV~~~~ 153 (201)
T 3r8s_E 132 KLLAQKLKDMALEDVLIITGEL 153 (201)
T ss_dssp HHHHHHHHHHTCSSEEEEESSC
T ss_pred HHHHHHHHHcCCCceEEEECCC
Confidence 4566688999999999998764
No 140
>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O
Probab=22.32 E-value=61 Score=26.36 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=21.8
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
||||.||..+++-|-+.||-++..+
T Consensus 153 sCTTn~Lap~lkvL~d~fGI~~g~m 177 (337)
T 3v1y_O 153 SCTTNCLAPLAKVIHDNFGIIEGLM 177 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred chhhhhHHHHHHHHHHhcCeEEEEE
Confidence 6999999999998888999988654
No 141
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=22.29 E-value=50 Score=26.61 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=27.2
Q ss_pred ccCcEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 28 QNGVQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 28 ~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
+.-+++|.||+.+.=+.....++..++.++|+.
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~ 34 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISG 34 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEEC
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeec
Confidence 344789999999888888888999988887765
No 142
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=22.26 E-value=60 Score=23.38 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=26.1
Q ss_pred CcEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 30 GVQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 30 GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
-+++|.||..+.-+.+..-++..+++|++..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 3789999999877777788888899999974
No 143
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=22.15 E-value=72 Score=21.60 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=24.7
Q ss_pred cEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 31 VQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 31 V~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
+++|.||..+-=+.+-..++..+++|++...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 6889999987766666777888999999753
No 144
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=22.00 E-value=69 Score=22.31 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=23.7
Q ss_pred EEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 32 QALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 32 ~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
++|.||..+-=+-..+.++..+++|+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 67889998776667777888899999976
No 145
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}
Probab=21.59 E-value=64 Score=26.36 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=21.7
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
||||.||..+++-|=+.||-++..+
T Consensus 153 SCTTn~Lap~lkvL~d~fGI~~g~m 177 (345)
T 4dib_A 153 SCTTNCLAPVVKVLDEQFGIENGLM 177 (345)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred chhhhhhHHHHHHHHHhcCeEEEEE
Confidence 6999999999988888999988654
No 146
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=21.54 E-value=89 Score=21.88 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=23.0
Q ss_pred cEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 31 VQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 31 V~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
+++|.||..+-=+...+.+++ +++|++..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 788999998766666666766 89999875
No 147
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*
Probab=21.41 E-value=65 Score=26.22 Aligned_cols=25 Identities=12% Similarity=-0.019 Sum_probs=21.6
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
||||.||..+++-|=+.||-++..+
T Consensus 152 sCTTn~Lap~lkvL~d~fGI~~g~m 176 (338)
T 3lvf_P 152 SCTTNSLAPVAKVLNDDFGLVEGLM 176 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred chhhhhhHHHHHHHHHhcCEEEEEE
Confidence 6999999999888888999988654
No 148
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=21.38 E-value=68 Score=23.73 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=25.8
Q ss_pred cEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 31 VQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 31 V~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
+++|.||+.+-=+.+-..++..++.++++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D 33 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALD 33 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence 6789999997777777888899999998763
No 149
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=21.32 E-value=81 Score=20.43 Aligned_cols=30 Identities=7% Similarity=-0.021 Sum_probs=24.1
Q ss_pred cEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 31 VQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 31 V~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
+++|.||..+-=+...+.+ ..++.|++...
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~ 32 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVMS 32 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEHh
Confidence 5788999997777777777 88999999753
No 150
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=21.29 E-value=80 Score=21.74 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=25.2
Q ss_pred cEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 31 VQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 31 V~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
+++|.||..+-=+.....+++.++.|+++..
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 6788899987777777788889999999753
No 151
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*
Probab=21.14 E-value=66 Score=26.07 Aligned_cols=25 Identities=12% Similarity=0.002 Sum_probs=21.7
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
||||.||..+++-|=+.||-++..+
T Consensus 149 sCTTn~Lap~lkvL~d~fGI~~g~m 173 (332)
T 3pym_A 149 SCTTNCLAPLAKVINDAFGIEEGLM 173 (332)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred cchhhhhHHHHHHHHHhcCeEEEEE
Confidence 6999999999888888999988654
No 152
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=21.09 E-value=69 Score=22.29 Aligned_cols=35 Identities=6% Similarity=0.078 Sum_probs=27.0
Q ss_pred hccC-cEEEEcCCCCCcHHHHHHhhccC-CCceEEee
Q psy17128 27 LQNG-VQALFGPSDALLGPHVQSICEAL-DVPHMESR 61 (124)
Q Consensus 27 l~~G-V~AI~GP~s~~~~~~vqsic~~~-~IP~i~~~ 61 (124)
+..| +++|.||+.+-=+.....+++.+ +++++...
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 3444 88999999987777777788877 78888654
No 153
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*
Probab=21.01 E-value=93 Score=25.13 Aligned_cols=25 Identities=12% Similarity=-0.021 Sum_probs=22.0
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
||||.||..+++-|.+.|+-++..+
T Consensus 167 sCtTn~lap~lkpL~~~~gI~~g~m 191 (354)
T 3cps_A 167 SCTTNCLAPLAKIINDKFGIVEGLM 191 (354)
T ss_dssp CHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CcHHHHHHHHHHHHHHhCCeeEEEE
Confidence 5999999999999999999887655
No 154
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=20.98 E-value=2.6e+02 Score=20.73 Aligned_cols=54 Identities=7% Similarity=0.009 Sum_probs=32.1
Q ss_pred CeeEEEecCCchHHHHHHHHHhhccCcEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 5 PSLVEVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 5 ~~I~~i~~~~~f~~~~~~~C~ll~~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
..++..+...+-....+.+=++.++++=+|++-.+++. ..+.+ ...++|.+...
T Consensus 44 v~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~t~aa-~a~~~--~~~~iPVVf~~ 97 (302)
T 3lkv_A 44 LEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATPTA-QALVS--ATKTIPIVFTA 97 (302)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEESHHHH-HHHHH--HCSSSCEEEEE
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEcCCHHH-HHHHh--hcCCCCeEEEe
Confidence 45666667777776333344555678888886544433 23322 34689998653
No 155
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Probab=20.97 E-value=67 Score=25.62 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=22.0
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
||||.||..+++-|.+.|+-++..+
T Consensus 150 sCttn~lap~lkpL~~~~gI~~~~m 174 (334)
T 3cmc_O 150 SCTTNCLAPFAKVLHEQFGIVRGMM 174 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred ChHHHHHHHHHHHHHHhcCceeeeE
Confidence 6999999999999999999987653
No 156
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1
Probab=20.94 E-value=68 Score=25.59 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=22.0
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
||||.||..+++-|.+.|+-++..+
T Consensus 150 sCttn~lap~lkpL~~~~gI~~~~~ 174 (332)
T 1hdg_O 150 SCTTNSIAPIVKVLHEKFGIVSGML 174 (332)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred ccHHHHHHHHHHHHHHhcCeeEeEE
Confidence 6999999999999999999887653
No 157
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=20.60 E-value=63 Score=21.68 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=23.9
Q ss_pred cEEEEcCCCCCcHHHHHHhhccCCCceEEe
Q psy17128 31 VQALFGPSDALLGPHVQSICEALDVPHMES 60 (124)
Q Consensus 31 V~AI~GP~s~~~~~~vqsic~~~~IP~i~~ 60 (124)
+++|.||..+-=+...+.+++.++.|+++.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 678889988766666677888889999975
No 158
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=20.52 E-value=38 Score=22.73 Aligned_cols=15 Identities=7% Similarity=0.552 Sum_probs=10.6
Q ss_pred hHHHHHHHhhcCceE
Q psy17128 101 NAAFKDVIRFLNWTK 115 (124)
Q Consensus 101 ~~a~~~li~~~~W~~ 115 (124)
..-+-.||.+|||+.
T Consensus 18 E~ilt~Lv~~YGW~~ 32 (88)
T 2jvw_A 18 QKLLTELVEHYGWEE 32 (88)
T ss_dssp HHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhCHHH
Confidence 334445999999974
No 159
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Probab=20.14 E-value=78 Score=25.29 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=21.4
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
||||.||..+++-|-+.|+-++..+
T Consensus 154 sCtTn~lap~lk~L~~~fgI~~~~~ 178 (339)
T 3b1j_A 154 SCTTNCLAPVAKVLHDNFGIIKGTM 178 (339)
T ss_dssp CHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cchhhHHHHHHHHHHHhCCeeEEEE
Confidence 6999999999988889999887654
No 160
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Probab=20.14 E-value=72 Score=25.40 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=22.1
Q ss_pred hhHHHHhhHHHHHHHhhcCceEEEE
Q psy17128 94 NWTKKLLNAAFKDVIRFLNWTKVAI 118 (124)
Q Consensus 94 ~~~~~~l~~a~~~li~~~~W~~v~i 118 (124)
||||.||..+++-|.+.|+-++..+
T Consensus 153 sCtt~~la~~lkpL~~~~gI~~~~~ 177 (337)
T 3e5r_O 153 SCTTNCLAPLAKVIHDNFGIIEGLM 177 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred ChHHHHHHHHHHHHHHhcCccccce
Confidence 5999999999999999999887655
No 161
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=20.07 E-value=81 Score=23.73 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=28.6
Q ss_pred cCcEEEEcCCCCCcHHHHHHhhccCCCceEEee
Q psy17128 29 NGVQALFGPSDALLGPHVQSICEALDVPHMESR 61 (124)
Q Consensus 29 ~GV~AI~GP~s~~~~~~vqsic~~~~IP~i~~~ 61 (124)
...++|+||+.+-=+.+..-+++.++.|++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 569999999998888888889999999999753
No 162
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=20.02 E-value=3.3e+02 Score=21.60 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=33.6
Q ss_pred HHHHhhcc-CcEEEEcCCC--CCcHHHHHHhhccCCCceEEeeCCCCCCCCceEEEeecC
Q psy17128 22 VMCRQLQN-GVQALFGPSD--ALLGPHVQSICEALDVPHMESRLDLELNSKEFSVNLYPS 78 (124)
Q Consensus 22 ~~C~ll~~-GV~AI~GP~s--~~~~~~vqsic~~~~IP~i~~~~~~~~~~~~f~vnl~P~ 78 (124)
.+-+.+++ .++-++|-|- ...+.++... ..++|.+.+..++... ..+.+.+.-.
T Consensus 248 ~a~~~~~~aDllLviGTSL~V~Paa~lv~~~--~~~~~~v~IN~~~t~~-~~~dl~i~g~ 304 (354)
T 2hjh_A 248 SIREDILECDLLICIGTSLKVAPVSEIVNMV--PSHVPQVLINRDPVKH-AEFDLSLLGY 304 (354)
T ss_dssp HHHHHTTTCCEEEEESCCCCEETGGGHHHHS--CTTSCEEEEESSCCTT-SCCSEEEESC
T ss_pred HHHHHHhhCCEEEEECcCCCchhHHHHHHHH--hcCCcEEEEcCCCCCC-CCcCEEEeCC
Confidence 34444544 7888889876 3456666533 3478999887765432 3456666655
Done!