RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17128
         (124 letters)



>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1,
           N-terminal microtubule binding domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 120

 Score = 24.7 bits (54), Expect = 2.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 77  PSQKLLNAAFKDVIRFLNWTKKLLNA 102
           P  KL+   F+D   F+ W KK  +A
Sbjct: 80  PVDKLVKGKFQDNFEFVQWFKKFFDA 105


>gi|226495805|ref|NP_001141284.1|(252-280:326) hypothetical
          protein LOC100273373 [Zea mays] 
          gi|149066116|gb|EDM15989.1| cytochrome c-1 (predicted),
          isoform CRA_c [Rattus norvegicus] 
          gi|194703754|gb|ACF85961.1| unknown [Zea mays] 
          gi|12833077|dbj|BAB22380.1| unnamed protein product
          [Mus musculus]   gi|13385006|ref|NP_079843.1|
          cytochrome c-1 [Mus musculus] 
          gi|21759079|sp|Q9D0M3.1|CY1_MOUSE RecName:
          Full=Cytochrome c1, heme protein, mitochondrial;
          AltName: Full=Ubiquinol-cytochrome-c reductase complex
          cytochrome c1 subunit; Short=Cytochrome c-1; AltName:
          Full=Cytochrome b-c1 complex subunit 4; AltName:
          Full=Complex III subunit 4; AltName: Full=Complex III
          subunit IV; Flags: Precursor 
          gi|12847311|dbj|BAB27518.1| unnamed protein product
          [Mus musculus]   gi|13542841|gb|AAH05620.1| Cytochrome
          c-1 [Mus musculus]   gi|74191403|dbj|BAE30282.1|
          unnamed protein product [Mus musculus] 
          gi|148697605|gb|EDL29552.1| cytochrome c-1, isoform
          CRA_c [Mus musculus]   gi|119602566|gb|EAW82160.1|
          cytochrome c-1 [Homo sapiens] 
          gi|109087720|ref|XP_001089782.1| PREDICTED: similar to
          Cytochrome c1, heme protein, mitochondrial precursor
          (Cytochrome c-1) isoform 1 [Macaca mulatta] 
          gi|74213069|dbj|BAE41677.1| unnamed protein product
          [Mus musculus]  E=3e-08 s/c=2.10 id=87% cov=103%
          Length = 29

 Score = 22.7 bits (49), Expect = 4.2
 Identities = 6/10 (60%), Positives = 6/10 (60%)

Query: 87 KDVIRFLNWT 96
          KDV  FL W 
Sbjct: 18 KDVATFLRWA 27



 Score = 22.7 bits (49), Expect = 4.2
 Identities = 6/10 (60%), Positives = 6/10 (60%)

Query: 105 KDVIRFLNWT 114
           KDV  FL W 
Sbjct: 18  KDVATFLRWA 27


>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2
           {Crab-eating macaque (Macaca fascicularis) [TaxId:
           9541]}
          Length = 113

 Score = 24.1 bits (51), Expect = 4.9
 Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 10/90 (11%)

Query: 8   VEVNVNTGLEEEESVMCRQLQNGVQALFGPSDALLGPHVQSICEALD--VPHMESRLDLE 65
            +V     +   E       +  +        +        I  AL   +   +   ++ 
Sbjct: 28  YQVVEVNPVLRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPLEEI- 86

Query: 66  LNSKEFSVNLYPSQKLLNAAFKDVIRFLNW 95
                  +  YP+ K +N   K+V  F N 
Sbjct: 87  -------ITYYPAMKAVNDQGKEVTEFGNK 109


>d1nvpd2 b.56.1.1 (D:54-99) Small chain TOA2, C-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 46

 Score = 22.3 bits (48), Expect = 7.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 95  WTKKLLNAAFKDVIRFLNWTKVAIV 119
           WT  L +  F++V   +   KV IV
Sbjct: 19  WTFVLNDVEFREVTELIKVDKVKIV 43


>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria
           meningitidis [TaxId: 487]}
          Length = 282

 Score = 23.7 bits (50), Expect = 7.5
 Identities = 5/36 (13%), Positives = 11/36 (30%)

Query: 79  QKLLNAAFKDVIRFLNWTKKLLNAAFKDVIRFLNWT 114
           +       +         + +LN  FK  + + N  
Sbjct: 171 KMSSEWVEQYKDVMQYQDQDILNGLFKGGVCYANSR 206


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0664    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 450,224
Number of extensions: 18095
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 9
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)