Query psy1713
Match_columns 397
No_of_seqs 259 out of 1379
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 22:40:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865|consensus 100.0 2.3E-70 5E-75 514.3 25.5 308 46-397 79-387 (545)
2 cd02663 Peptidase_C19G A subfa 100.0 1.6E-59 3.4E-64 438.4 26.0 258 77-397 1-271 (300)
3 cd02668 Peptidase_C19L A subfa 100.0 3.4E-59 7.4E-64 440.8 27.2 272 77-397 1-282 (324)
4 cd02671 Peptidase_C19O A subfa 100.0 2.4E-58 5.3E-63 432.6 27.8 256 70-397 19-302 (332)
5 cd02660 Peptidase_C19D A subfa 100.0 2.2E-58 4.8E-63 437.2 27.4 279 76-397 1-307 (328)
6 cd02661 Peptidase_C19E A subfa 100.0 5.8E-58 1.2E-62 430.0 28.7 282 75-397 1-283 (304)
7 cd02664 Peptidase_C19H A subfa 100.0 6.3E-58 1.4E-62 432.0 24.4 254 77-397 1-299 (327)
8 cd02657 Peptidase_C19A A subfa 100.0 9.3E-56 2E-60 414.9 25.8 261 77-397 1-277 (305)
9 cd02667 Peptidase_C19K A subfa 100.0 5.3E-56 1.2E-60 410.2 22.6 224 77-397 1-258 (279)
10 cd02658 Peptidase_C19B A subfa 100.0 2.6E-55 5.7E-60 412.9 24.0 255 77-397 1-290 (311)
11 COG5560 UBP12 Ubiquitin C-term 100.0 1.4E-56 3E-61 422.2 14.3 319 74-397 264-799 (823)
12 cd02659 peptidase_C19C A subfa 100.0 1.7E-54 3.6E-59 411.7 25.1 271 74-397 1-287 (334)
13 cd02669 Peptidase_C19M A subfa 100.0 1.2E-53 2.6E-58 416.4 27.6 282 70-397 114-419 (440)
14 COG5533 UBP5 Ubiquitin C-termi 100.0 2.5E-53 5.3E-58 369.5 18.9 304 57-397 53-390 (415)
15 cd02662 Peptidase_C19F A subfa 100.0 8.2E-49 1.8E-53 353.9 19.0 187 77-397 1-218 (240)
16 KOG0944|consensus 100.0 3.7E-47 8E-52 361.3 16.0 228 72-354 304-550 (763)
17 cd02674 Peptidase_C19R A subfa 100.0 2.2E-46 4.8E-51 337.3 18.0 198 77-397 1-209 (230)
18 KOG1868|consensus 100.0 3.6E-47 7.8E-52 374.0 11.1 288 72-397 298-623 (653)
19 KOG1866|consensus 100.0 1.3E-46 2.9E-51 359.9 7.8 276 70-396 90-390 (944)
20 cd02666 Peptidase_C19J A subfa 100.0 9.6E-44 2.1E-48 333.2 18.4 255 75-397 1-316 (343)
21 COG5077 Ubiquitin carboxyl-ter 100.0 1.4E-44 3.1E-49 346.5 9.3 269 71-397 189-466 (1089)
22 cd02665 Peptidase_C19I A subfa 100.0 2E-43 4.4E-48 310.8 13.8 195 77-397 1-199 (228)
23 cd02673 Peptidase_C19Q A subfa 100.0 7.5E-43 1.6E-47 313.4 17.1 216 78-397 2-221 (245)
24 KOG1867|consensus 100.0 1.1E-42 2.3E-47 336.7 17.7 279 74-397 160-461 (492)
25 PF00443 UCH: Ubiquitin carbox 100.0 1E-42 2.3E-47 319.8 16.5 235 75-397 1-246 (269)
26 KOG1873|consensus 100.0 1.4E-41 3.1E-46 326.3 10.6 123 274-397 676-854 (877)
27 cd02257 Peptidase_C19 Peptidas 100.0 1.2E-39 2.7E-44 296.0 19.6 213 77-397 1-229 (255)
28 COG5207 UBP14 Isopeptidase T [ 100.0 7.6E-40 1.6E-44 302.0 14.8 224 75-353 303-539 (749)
29 KOG1870|consensus 100.0 1.1E-39 2.3E-44 337.6 10.7 324 70-397 241-818 (842)
30 PF13423 UCH_1: Ubiquitin carb 100.0 2.4E-37 5.3E-42 288.0 23.5 274 76-396 1-292 (295)
31 KOG1863|consensus 100.0 7.2E-39 1.6E-43 339.2 11.9 278 65-397 160-446 (1093)
32 KOG4598|consensus 100.0 5.9E-39 1.3E-43 305.1 4.2 244 73-397 85-405 (1203)
33 cd02672 Peptidase_C19P A subfa 100.0 4.1E-37 8.9E-42 279.9 13.9 216 74-397 14-253 (268)
34 KOG1864|consensus 100.0 3.7E-33 8E-38 274.5 18.8 284 74-397 231-546 (587)
35 cd02670 Peptidase_C19N A subfa 100.0 5.6E-33 1.2E-37 246.7 13.9 154 164-397 22-214 (241)
36 KOG1872|consensus 100.0 1.3E-30 2.8E-35 241.2 6.6 279 70-397 100-439 (473)
37 KOG1871|consensus 100.0 2E-29 4.4E-34 227.4 11.7 281 73-397 26-392 (420)
38 KOG2026|consensus 99.9 1.5E-26 3.2E-31 208.1 17.5 266 69-396 128-417 (442)
39 KOG1275|consensus 99.7 6.3E-17 1.4E-21 159.9 15.2 275 74-396 498-834 (1118)
40 PF15499 Peptidase_C98: Ubiqui 98.9 4E-08 8.7E-13 85.5 12.3 80 297-396 171-250 (275)
41 KOG1864|consensus 97.6 0.00024 5.3E-09 71.3 8.2 105 78-183 34-152 (587)
42 KOG3556|consensus 96.4 0.00097 2.1E-08 63.9 0.3 31 74-104 367-397 (724)
43 KOG1887|consensus 95.2 0.0089 1.9E-07 60.8 1.6 187 163-396 547-759 (806)
44 PF05408 Peptidase_C28: Foot-a 94.0 0.028 6.1E-07 46.9 1.6 23 75-97 33-55 (193)
45 PF08715 Viral_protease: Papai 90.7 0.66 1.4E-05 43.3 6.3 36 145-181 144-179 (320)
46 PF05408 Peptidase_C28: Foot-a 79.9 3 6.6E-05 35.1 4.3 20 377-397 138-157 (193)
47 PF14353 CpXC: CpXC protein 77.9 3.7 8E-05 32.9 4.2 12 297-308 39-50 (128)
48 COG3478 Predicted nucleic-acid 76.0 2.5 5.5E-05 28.8 2.2 35 295-329 3-39 (68)
49 PF01473 CW_binding_1: Putativ 75.7 2.2 4.7E-05 21.6 1.5 15 382-397 2-16 (19)
50 PF02099 Josephin: Josephin; 64.4 7.6 0.00017 32.4 3.2 26 364-395 99-124 (157)
51 PF03292 Pox_P4B: Poxvirus P4B 62.7 15 0.00033 36.9 5.3 63 319-392 479-564 (666)
52 PF10748 DUF2531: Protein of u 53.1 21 0.00045 28.7 3.7 30 359-394 33-62 (132)
53 KOG1871|consensus 51.0 6.8 0.00015 37.2 0.8 36 73-108 176-211 (420)
54 PF09855 DUF2082: Nucleic-acid 48.9 14 0.0003 25.6 1.9 32 297-328 1-34 (64)
55 COG2051 RPS27A Ribosomal prote 45.2 16 0.00034 25.3 1.6 29 214-263 19-47 (67)
56 PF12252 SidE: Dot/Icm substra 44.8 21 0.00045 38.5 3.2 25 371-395 56-80 (1439)
57 COG0093 RplN Ribosomal protein 36.4 26 0.00055 27.4 1.8 26 363-397 57-82 (122)
58 KOG1867|consensus 34.9 14 0.00031 36.9 0.3 34 71-104 73-106 (492)
59 KOG2906|consensus 33.8 96 0.0021 23.4 4.4 21 297-317 66-86 (105)
60 PF09723 Zn-ribbon_8: Zinc rib 30.5 51 0.0011 20.5 2.2 30 214-262 5-34 (42)
61 KOG2935|consensus 29.6 7.9 0.00017 34.3 -2.1 25 365-395 104-128 (315)
62 smart00460 TGc Transglutaminas 27.3 69 0.0015 21.7 2.8 20 375-395 46-65 (68)
63 PF09932 DUF2164: Uncharacteri 26.8 1.3E+02 0.0027 21.7 4.0 60 125-184 11-71 (76)
64 TIGR00310 ZPR1_znf ZPR1 zinc f 26.6 67 0.0014 27.8 3.0 52 297-349 31-87 (192)
65 PRK00415 rps27e 30S ribosomal 26.4 54 0.0012 22.3 1.9 13 214-226 11-23 (59)
66 PF07754 DUF1610: Domain of un 26.3 38 0.00082 18.4 0.9 10 295-304 15-24 (24)
67 PF03367 zf-ZPR1: ZPR1 zinc-fi 26.1 67 0.0015 26.9 2.9 60 285-348 22-88 (161)
68 cd00730 rubredoxin Rubredoxin; 25.0 42 0.0009 22.0 1.1 10 297-306 35-44 (50)
69 PF13465 zf-H2C2_2: Zinc-finge 24.9 38 0.00082 18.5 0.8 13 293-305 11-23 (26)
70 PF01841 Transglut_core: Trans 24.7 49 0.0011 25.1 1.7 21 375-395 92-112 (113)
71 KOG2463|consensus 24.6 1.1E+02 0.0024 28.6 4.1 36 295-331 256-292 (376)
72 smart00709 Zpr1 Duplicated dom 23.7 90 0.0019 26.1 3.2 52 297-349 30-88 (160)
73 PF08715 Viral_protease: Papai 23.1 60 0.0013 30.5 2.2 18 367-386 264-281 (320)
74 PF01667 Ribosomal_S27e: Ribos 22.9 72 0.0016 21.3 1.9 13 214-226 7-19 (55)
75 cd01269 PLX Pollux (PLX) Phosp 22.1 1E+02 0.0022 24.5 2.9 27 360-386 81-107 (129)
76 PRK03824 hypA hydrogenase nick 21.8 1.3E+02 0.0028 24.3 3.7 17 210-226 66-82 (135)
77 PF11023 DUF2614: Protein of u 21.2 59 0.0013 25.2 1.4 14 213-226 68-81 (114)
78 PTZ00112 origin recognition co 21.1 83 0.0018 34.2 2.9 24 20-43 134-157 (1164)
79 PF14690 zf-ISL3: zinc-finger 20.9 99 0.0021 19.4 2.3 33 297-329 3-43 (47)
No 1
>KOG1865|consensus
Probab=100.00 E-value=2.3e-70 Score=514.28 Aligned_cols=308 Identities=35% Similarity=0.650 Sum_probs=284.3
Q ss_pred CCCCCCCCCcccccCCccccCCCCCCCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhH
Q psy1713 46 NSKCLLPKPKEILYSPNKITLGWQGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECL 125 (397)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l 125 (397)
........|...+||..+..+.|.+....++||.|+|||||+|||||||.++|||++||+...+.. .|.+. .+|+
T Consensus 79 ~~~~~~~~p~k~Lfp~e~~~~~~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~-~C~~~----~~C~ 153 (545)
T KOG1865|consen 79 DSDDGNAPPAKVLFPYEKLPLSSDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSR-SCHRA----KFCM 153 (545)
T ss_pred ccCCCcCCcchhccccceecccccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhh-hcccc----Ceee
Confidence 344556678889999999889999999999999999999999999999999999999999887765 45422 3899
Q ss_pred HHHHHHHHHHHHhcCCCccChHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcccc
Q psy1713 126 VCAMRKTLAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQ 205 (397)
Q Consensus 126 ~~~l~~l~~~~~~~~~~~~~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~ 205 (397)
+|+|+.++.......+.+++|..|+..|+.+..+|..|+|+||||||++++|.|+..++.+ ....+...++.+++++
T Consensus 154 lc~~q~hi~~A~~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g---~~~~~~~sq~ttlv~~ 230 (545)
T KOG1865|consen 154 LCTFQAHITRALHNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPG---HKQVDPRSQDTTLVHQ 230 (545)
T ss_pred ehHHHHHHHHHhcCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCC---CccCCcccccceehhh
Confidence 9999999999888888899999999999999999999999999999999999999998743 3366677788899999
Q ss_pred ccCeeecceEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhc
Q psy1713 206 LFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHF 285 (397)
Q Consensus 206 ~F~g~~~~~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~ 285 (397)
+|+|.++++++|..|++++.+ +|++ ++|+|+|....+|+++|++|
T Consensus 231 iFGG~LrS~vkC~~C~~vS~t-----------------yE~~------------------~dltvei~d~~sl~~AL~qF 275 (545)
T KOG1865|consen 231 IFGGYLRSQIKCLHCKGVSDT-----------------YEPY------------------LDLTLEIQDASSLQQALEQF 275 (545)
T ss_pred hhccchhhceecccCCCcccc-----------------cccc------------------cceEEEeccchhHHHHHHHh
Confidence 999999999999999999999 9999 99999999999999999999
Q ss_pred ccceeeCCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeeccc-CCCCCCcccccCCceeccCcccccCCCCCcceEE
Q psy1713 286 FAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNY-HGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKL 364 (397)
Q Consensus 286 ~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~-~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L 364 (397)
++.|.++|+|+|+|++|++++.|.|++.|.++|+||+||||||.. .+.|+.+.|.||+.|||.+||..+.+ ...+|.|
T Consensus 276 t~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~~~~gKI~K~I~fPE~LDl~PyMS~~~e-~s~~Y~L 354 (545)
T KOG1865|consen 276 TKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSNGTGGKISKPVSFPETLDLQPYMSQPNE-GSTVYKL 354 (545)
T ss_pred hhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhccCcccccccccCCcccccccccccCCCC-CCceEEE
Confidence 999999999999999999999999999999999999999999954 56899999999999999999995543 4789999
Q ss_pred EEEEEeecCCCCCCceEEEEecCCCCeEEecCC
Q psy1713 365 VSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397 (397)
Q Consensus 365 ~avv~H~G~~~~~GHY~~~vr~~~~~W~~fdDs 397 (397)
||||+|.|.....|||+||||..+|.||++||+
T Consensus 355 YavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS 387 (545)
T KOG1865|consen 355 YAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDS 387 (545)
T ss_pred EEEEEeccccccCCceEEEEEcCCCceEEccCc
Confidence 999999999999999999999999999999996
No 2
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-59 Score=438.41 Aligned_cols=258 Identities=33% Similarity=0.556 Sum_probs=227.6
Q ss_pred CcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCC--CccChHHHHHHHH
Q psy1713 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSG--SAIRPELIIKKLK 154 (397)
Q Consensus 77 GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~--~~~~p~~~~~~l~ 154 (397)
||.|+||||||||+||+|++ .+++++|+.+|.+++.... ..++|..|+++++
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~--------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~ 54 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF--------------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLK 54 (300)
T ss_pred CccCCCcceehhHHHHHhhh--------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHH
Confidence 99999999999999999987 2388899999999987643 5799999999999
Q ss_pred HHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCC------CCCCCCCCCccccccCeeecceEEeCCCCccccccc
Q psy1713 155 LIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNK------LDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCL 228 (397)
Q Consensus 155 ~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~------~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~ 228 (397)
...+.|..++||||||||.+|||.|++++......... ........+.+.++|+|++.+.++|..|++.+.+
T Consensus 55 ~~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~-- 132 (300)
T cd02663 55 RENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSR-- 132 (300)
T ss_pred hhcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccc--
Confidence 99999999999999999999999999998654321110 0011234577899999999999999999999999
Q ss_pred cccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhcccceeeCCCCceecCCCCCccee
Q psy1713 229 FHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEA 308 (397)
Q Consensus 229 ~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~ 308 (397)
.|+| ++|+|+|++..+|+++|+.|+.+|.++|+++|.|++|++++.+
T Consensus 133 ---------------~e~f------------------~~Lsl~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a 179 (300)
T cd02663 133 ---------------DETF------------------LDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEA 179 (300)
T ss_pred ---------------ccee------------------EEeccCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeE
Confidence 9999 9999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeCCceEEEEEeecccC-----CCCCCcccccCCceeccCcccccCCCCCcceEEEEEEEeecCCCCCCceEEE
Q psy1713 309 TKRFSVDKPPNVLRLQLKRFNYH-----GLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCI 383 (397)
Q Consensus 309 ~k~~~i~~lP~iL~i~l~Rf~~~-----~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~ 383 (397)
+|+..|.++|+||+|||+||.|+ ..|+...|.||..|+|..+.... ......|+|+|||+|.|.++++|||+||
T Consensus 180 ~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~-~~~~~~Y~L~~vi~H~G~~~~~GHY~a~ 258 (300)
T cd02663 180 EKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDDA-ENPDRLYELVAVVVHIGGGPNHGHYVSI 258 (300)
T ss_pred EEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEecccccccc-CCCCeEEEEEEEEEEecCCCCCCceEEE
Confidence 99999999999999999999775 36999999999999998775432 2335799999999999977899999999
Q ss_pred EecCCCCeEEecCC
Q psy1713 384 GSTSSGSYHYFDDE 397 (397)
Q Consensus 384 vr~~~~~W~~fdDs 397 (397)
+|. +++||+|||+
T Consensus 259 ~k~-~~~W~~fdD~ 271 (300)
T cd02663 259 VKS-HGGWLLFDDE 271 (300)
T ss_pred EEC-CCcEEEEcCC
Confidence 999 8999999996
No 3
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-59 Score=440.84 Aligned_cols=272 Identities=27% Similarity=0.439 Sum_probs=236.6
Q ss_pred CcccCCCcchHHHHHHHhhCcHHHHHHHhcccccccccc----ccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHHHH
Q psy1713 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCE----KQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKK 152 (397)
Q Consensus 77 GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~----~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~~~ 152 (397)
||.|+||||||||+||+|+++|+|+++++.......... ........+++++|+.+|.+|+......++|..|+..
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 999999999999999999999999999987654321110 0001112579999999999999888889999999988
Q ss_pred HHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccccccccccc
Q psy1713 153 LKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSR 232 (397)
Q Consensus 153 l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~ 232 (397)
++ +..++||||+|||.+||+.|++++..... ....+++.++|.|++...++|..|+..+.+
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~--------~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~------ 141 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN--------PDLKNIVQDLFRGEYSYVTQCSKCGRESSL------ 141 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhccC--------CcccchhhhhcceEEEEEEEeCCCCCcccc------
Confidence 74 67899999999999999999998753211 113468889999999999999999999988
Q ss_pred cccccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEE
Q psy1713 233 LDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRF 312 (397)
Q Consensus 233 ~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~ 312 (397)
.++| +.|+|++++..+|+++|+.|+.+|.++|+++|.|++|++++.+.|+.
T Consensus 142 -----------~e~f------------------~~l~l~i~~~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~ 192 (324)
T cd02668 142 -----------PSKF------------------YELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRI 192 (324)
T ss_pred -----------cccc------------------EEEEEEecccCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEE
Confidence 9999 99999999889999999999999999999999999999999999999
Q ss_pred EeeeCCceEEEEEeecccC-----CCCCCcccccCCceeccCcccccCCCCCcceEEEEEEEeecCCCCCCceEEEEecC
Q psy1713 313 SVDKPPNVLRLQLKRFNYH-----GLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTS 387 (397)
Q Consensus 313 ~i~~lP~iL~i~l~Rf~~~-----~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~~ 387 (397)
.|.++|++|+|||+||.|+ ..|++..|.||+.|||.+|+.... .....|+|+|||+|.|.++++|||+||+|..
T Consensus 193 ~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~-~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~ 271 (324)
T cd02668 193 RLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAESD-EGSYVYELSGVLIHQGVSAYSGHYIAHIKDE 271 (324)
T ss_pred EecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhhccccc-CCCcEEEEEEEEEEcCCCCCCEeeEEEEECC
Confidence 9999999999999999775 369999999999999999986543 3467899999999999878999999999985
Q ss_pred -CCCeEEecCC
Q psy1713 388 -SGSYHYFDDE 397 (397)
Q Consensus 388 -~~~W~~fdDs 397 (397)
+|+||+|||+
T Consensus 272 ~~~~W~~fdD~ 282 (324)
T cd02668 272 QTGEWYKFNDE 282 (324)
T ss_pred CCCcEEEEECC
Confidence 5899999996
No 4
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-58 Score=432.58 Aligned_cols=256 Identities=26% Similarity=0.386 Sum_probs=220.2
Q ss_pred CCCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHH
Q psy1713 70 GRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELI 149 (397)
Q Consensus 70 ~~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~ 149 (397)
+...+.+||.|+||||||||+||+|+++|+|++.+....... . ....+..+..++..++........|..|
T Consensus 19 ~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-------~--~~~~~q~~~~~l~~~~~~~~~~~~P~~~ 89 (332)
T cd02671 19 ENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI-------S--SVEQLQSSFLLNPEKYNDELANQAPRRL 89 (332)
T ss_pred ccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc-------C--cHHHHHHHHHHHHHHHhhcccccCHHHH
Confidence 345678999999999999999999999999999987653111 0 0112223334445555555566779999
Q ss_pred HHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCcccccccc
Q psy1713 150 IKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLF 229 (397)
Q Consensus 150 ~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~ 229 (397)
+..+++..+.|..+.||||||||.+|||.|+.. +.++|+|.+...++|..|++.+.+
T Consensus 90 ~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~~--------------------i~~~F~g~~~~~~~C~~C~~~s~~--- 146 (332)
T cd02671 90 LNALREVNPMYEGYLQHDAQEVLQCILGNIQEL--------------------VEKDFQGQLVLRTRCLECETFTER--- 146 (332)
T ss_pred HHHHHHhccccCCccccCHHHHHHHHHHHHHHH--------------------HHhhhceEEEEEEEeCCCCCeece---
Confidence 999999999999999999999999999999853 567999999999999999999999
Q ss_pred ccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCC-------------------CCHHHHHHhccccee
Q psy1713 230 HSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS-------------------SSLDEALGHFFAKEY 290 (397)
Q Consensus 230 ~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~-------------------~sL~~~L~~~~~~E~ 290 (397)
.|+| ++|+|+++.. .+|++||+.|+.+|.
T Consensus 147 --------------~E~f------------------~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~ 194 (332)
T cd02671 147 --------------REDF------------------QDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVER 194 (332)
T ss_pred --------------eccc------------------EEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcce
Confidence 9999 9999999754 589999999999999
Q ss_pred eCCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeecccC---------CCCCCcccccCCceeccCcccccCCCCCcc
Q psy1713 291 LGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYH---------GLKNSRSVQVPLHLEFGKFMHCRMSHSQLK 361 (397)
Q Consensus 291 l~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~---------~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~ 361 (397)
++|+++|+|++|++++.+.|+..|.++|+||+|||+||.++ ..|+++.|.||..|++.++.... ....
T Consensus 195 l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~---~~~~ 271 (332)
T cd02671 195 IVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTKP---KNDV 271 (332)
T ss_pred ecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccccccccccCCC---CCCe
Confidence 99999999999999999999999999999999999999753 35999999999999998776442 3578
Q ss_pred eEEEEEEEeecCCCCCCceEEEEecCCCCeEEecCC
Q psy1713 362 YKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397 (397)
Q Consensus 362 Y~L~avv~H~G~~~~~GHY~~~vr~~~~~W~~fdDs 397 (397)
|+|+|||+|.|.+.++|||+|||| ||+|||+
T Consensus 272 Y~L~~VI~H~G~~~~~GHY~a~vr-----W~~fdD~ 302 (332)
T cd02671 272 YRLFAVVMHSGATISSGHYTAYVR-----WLLFDDS 302 (332)
T ss_pred EEEEEEEEEcCCCCCCCeEEEEEE-----EEEEcCc
Confidence 999999999997789999999999 9999996
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-58 Score=437.16 Aligned_cols=279 Identities=34% Similarity=0.558 Sum_probs=239.3
Q ss_pred CCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhc-CCCccChHHHHHHHH
Q psy1713 76 AGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAK-SGSAIRPELIIKKLK 154 (397)
Q Consensus 76 ~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~-~~~~~~p~~~~~~l~ 154 (397)
+||.|+||||||||+||+|+++|+|+++++....... + .......|++++|.++|..++.. ....+.|..|+.++.
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~-~--~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~ 77 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCT-C--LSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSW 77 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccc-c--ccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 6999999999999999999999999999988643321 0 11122367999999999999543 347889999999998
Q ss_pred HHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccccccccccccc
Q psy1713 155 LIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLD 234 (397)
Q Consensus 155 ~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~~~ 234 (397)
...+.|.++.||||||||.+||+.|++++....+.. .......++|.++|+|.+.+.++|..|++.+.+
T Consensus 78 ~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~---~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~-------- 146 (328)
T cd02660 78 KHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA---NDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTT-------- 146 (328)
T ss_pred hhchhhcccccccHHHHHHHHHHHHHHHhhcccccc---cccccCCceeEEecccEEEeeeEcCCCCCccce--------
Confidence 888889999999999999999999999976543211 011223578999999999999999999999999
Q ss_pred cccCCCCccccccccccccccccCCCCCccceeeeecCCCC---------------CCHHHHHHhcccceeeCCCCceec
Q psy1713 235 SASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS---------------SSLDEALGHFFAKEYLGGDNLYRC 299 (397)
Q Consensus 235 ~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~---------------~sL~~~L~~~~~~E~l~~~~~~~C 299 (397)
.++| +.|+|+++.. .+|+++|+.|+.+|.+++.+ |.|
T Consensus 147 ---------~e~f------------------~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C 198 (328)
T cd02660 147 ---------VDPF------------------LDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKC 198 (328)
T ss_pred ---------eccc------------------ceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccC
Confidence 9999 9999988765 89999999999999998777 999
Q ss_pred CCCCCcceeEEEEEeeeCCceEEEEEeecccCC----CCCCcccccCCceeccCcccc--------cCCCCCcceEEEEE
Q psy1713 300 EKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHG----LKNSRSVQVPLHLEFGKFMHC--------RMSHSQLKYKLVSA 367 (397)
Q Consensus 300 ~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~~----~K~~~~v~fp~~Ldl~~~~~~--------~~~~~~~~Y~L~av 367 (397)
++|++++.+.++..|.++|++|+|||+||.++. .|+...|.||..|||.+|+.. ........|+|+||
T Consensus 199 ~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~av 278 (328)
T cd02660 199 SGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAV 278 (328)
T ss_pred CCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEE
Confidence 999999999999999999999999999997653 799999999999999999874 22345689999999
Q ss_pred EEeecCCCCCCceEEEEecCCCCeEEecCC
Q psy1713 368 VIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397 (397)
Q Consensus 368 v~H~G~~~~~GHY~~~vr~~~~~W~~fdDs 397 (397)
|+|.|+ .++|||+||+|..+++||+|||+
T Consensus 279 i~H~G~-~~~GHY~~~~~~~~~~W~~~nD~ 307 (328)
T cd02660 279 VVHKGT-LDTGHYTAYCRQGDGQWFKFDDA 307 (328)
T ss_pred EEeecc-CCCCcEEEEEECCCCcEEEEECC
Confidence 999997 78999999999977999999996
No 6
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.8e-58 Score=430.02 Aligned_cols=282 Identities=41% Similarity=0.757 Sum_probs=248.2
Q ss_pred CCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHHHHHH
Q psy1713 75 GAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLK 154 (397)
Q Consensus 75 ~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~~~l~ 154 (397)
|+||.|+||||||||+||+|+++|+|+++++......... ....+++++|+.++.+++......+.|..|..++.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~ 75 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC-----NEGFCMMCALEAHVERALASSGPGSAPRIFSSNLK 75 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhcc-----CCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHH
Confidence 6899999999999999999999999999998754332111 11357999999999999888888999999999999
Q ss_pred HHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccccccccccccc
Q psy1713 155 LIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLD 234 (397)
Q Consensus 155 ~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~~~ 234 (397)
...+.|..+.||||+|||.+||+.|+++..................+++.++|+|++.+.++|..|+..+.+
T Consensus 76 ~~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~-------- 147 (304)
T cd02661 76 QISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNT-------- 147 (304)
T ss_pred HHHHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCc--------
Confidence 999999999999999999999999999876543221111122334578999999999999999999999998
Q ss_pred cccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEEEe
Q psy1713 235 SASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSV 314 (397)
Q Consensus 235 ~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~~i 314 (397)
.+.| ..|+++++...+|+++|+.++.+|.++++++|.|++|++++.+.++..|
T Consensus 148 ---------~e~~------------------~~l~l~i~~~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i 200 (304)
T cd02661 148 ---------YDPF------------------LDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTI 200 (304)
T ss_pred ---------cccc------------------eeeeeecCCCCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEE
Confidence 9999 9999999998999999999999999999999999999999999999999
Q ss_pred eeCCceEEEEEeecccC-CCCCCcccccCCceeccCcccccCCCCCcceEEEEEEEeecCCCCCCceEEEEecCCCCeEE
Q psy1713 315 DKPPNVLRLQLKRFNYH-GLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHY 393 (397)
Q Consensus 315 ~~lP~iL~i~l~Rf~~~-~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~~~~~W~~ 393 (397)
.++|++|+|||+||.++ ..|+.+.|.||+.|||.+++..+. .....|+|+|||+|.|....+|||+||+|.++|+||+
T Consensus 201 ~~~P~iL~i~l~Rf~~~~~~Ki~~~v~f~~~L~l~~~~~~~~-~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~ 279 (304)
T cd02661 201 HRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMSQPN-DGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYN 279 (304)
T ss_pred ecCCcEEEEEEeccccCCccccCCeEecCCeechhhccccCC-CCCceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEE
Confidence 99999999999999887 889999999999999999987632 3467999999999999866999999999998899999
Q ss_pred ecCC
Q psy1713 394 FDDE 397 (397)
Q Consensus 394 fdDs 397 (397)
|||+
T Consensus 280 ~nD~ 283 (304)
T cd02661 280 MDDS 283 (304)
T ss_pred EeCC
Confidence 9996
No 7
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.3e-58 Score=432.02 Aligned_cols=254 Identities=30% Similarity=0.489 Sum_probs=220.5
Q ss_pred CcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHH-HHHHHHH
Q psy1713 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPEL-IIKKLKL 155 (397)
Q Consensus 77 GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~-~~~~l~~ 155 (397)
||.|+||||||||+||+|+++|+|++++++........ ..+++++|+.+|..+.......+.|.. ++..+.
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~~~-------~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~- 72 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGD-------SQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR- 72 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccccCC-------cchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc-
Confidence 89999999999999999999999999999876432111 134788999999887766666777776 665443
Q ss_pred HhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCcccccccccccccc
Q psy1713 156 IARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDS 235 (397)
Q Consensus 156 ~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~~~~ 235 (397)
.+.|..++||||||||.+||+.|+. +|.++|+|++.+.++|..|+.++.+
T Consensus 73 -~~~f~~~~QqDa~EFl~~lLd~l~~--------------------~i~~~F~G~~~~~i~C~~C~~~s~~--------- 122 (327)
T cd02664 73 -PPWFTPGSQQDCSEYLRYLLDRLHT--------------------LIEKMFGGKLSTTIRCLNCNSTSAR--------- 122 (327)
T ss_pred -ccccCCCCcCCHHHHHHHHHHHHHH--------------------HHHhhCcEEeEeEEEcCCCCCEecc---------
Confidence 4678899999999999999999992 4678999999999999999999999
Q ss_pred ccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEEEee
Q psy1713 236 ASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVD 315 (397)
Q Consensus 236 ~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~ 315 (397)
.|+| ..|+|+++ +|+++|+.|+.+|.++|+++|+|++|++++.+.|+..|.
T Consensus 123 --------~e~f------------------~~l~L~i~---sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~ 173 (327)
T cd02664 123 --------TERF------------------RDLDLSFP---SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVT 173 (327)
T ss_pred --------cccc------------------eeeecCCC---CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcc
Confidence 9999 99999987 899999999999999999999999999999999999999
Q ss_pred eCCceEEEEEeecccCC-----CCCCcccccCCceeccCccccc------------------CCCCCcceEEEEEEEeec
Q psy1713 316 KPPNVLRLQLKRFNYHG-----LKNSRSVQVPLHLEFGKFMHCR------------------MSHSQLKYKLVSAVIHHG 372 (397)
Q Consensus 316 ~lP~iL~i~l~Rf~~~~-----~K~~~~v~fp~~Ldl~~~~~~~------------------~~~~~~~Y~L~avv~H~G 372 (397)
++|+||+|||+||.|+. .|+.+.|.||+.|||..++... .......|+|+|||+|.|
T Consensus 174 ~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G 253 (327)
T cd02664 174 GAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSG 253 (327)
T ss_pred cCChhhEEEeeeeEEccccCcceecCceEecCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEcc
Confidence 99999999999997753 5999999999999999886421 112457899999999999
Q ss_pred CCCCCCceEEEEecCC---------------------CCeEEecCC
Q psy1713 373 SSPDSGHYTCIGSTSS---------------------GSYHYFDDE 397 (397)
Q Consensus 373 ~~~~~GHY~~~vr~~~---------------------~~W~~fdDs 397 (397)
.++++|||+||+|.+. ++||+|||+
T Consensus 254 ~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~ 299 (327)
T cd02664 254 YSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDS 299 (327)
T ss_pred CCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCC
Confidence 8789999999999854 799999996
No 8
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.3e-56 Score=414.91 Aligned_cols=261 Identities=26% Similarity=0.380 Sum_probs=226.4
Q ss_pred CcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHHHHHHHH
Q psy1713 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLI 156 (397)
Q Consensus 77 GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~~~l~~~ 156 (397)
||.|+||||||||+||+|+++|+|++++++...... .......+++++|+++|..++... ..++|..|+..++..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~----~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~ 75 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARR----GANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMA 75 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccc----ccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHH
Confidence 899999999999999999999999999987654321 011123579999999999988754 589999999999998
Q ss_pred hccc------cccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCC-cccccccc
Q psy1713 157 ARHL------EHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCS-HISTQCLF 229 (397)
Q Consensus 157 ~~~f------~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~-~~s~~~~~ 229 (397)
.+.| ..++||||||||.+||+.|++++... ....+.+.++|+|++.+.++|..|+ .++.+
T Consensus 76 ~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~----------~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~--- 142 (305)
T cd02657 76 FPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA----------GSKGSFIDQLFGIELETKMKCTESPDEEEVS--- 142 (305)
T ss_pred CcCcccccCCCCccccCHHHHHHHHHHHHHHHhccc----------CCCCcHHHHhhceEEEEEEEcCCCCCCCccc---
Confidence 8888 35599999999999999999986431 1245789999999999999999999 78888
Q ss_pred ccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCC---CCHHHHHHhcccceeeCCCCceecCCCCCcc
Q psy1713 230 HSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS---SSLDEALGHFFAKEYLGGDNLYRCEKCGRKV 306 (397)
Q Consensus 230 ~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~---~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~ 306 (397)
.|+| ..|+++|+.. .+|+++|+.++++|.. ..|+.|+...
T Consensus 143 --------------~e~f------------------~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~ 185 (305)
T cd02657 143 --------------TESE------------------YKLQCHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDA 185 (305)
T ss_pred --------------cccc------------------eEEEeecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCc
Confidence 9999 9999999865 6899999999987644 4799999999
Q ss_pred eeEEEEEeeeCCceEEEEEeecccCC-----CCCCcccccCCceeccCcccccCCCCCcceEEEEEEEeecCCCCCCceE
Q psy1713 307 EATKRFSVDKPPNVLRLQLKRFNYHG-----LKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYT 381 (397)
Q Consensus 307 ~~~k~~~i~~lP~iL~i~l~Rf~~~~-----~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~ 381 (397)
.+.|+..|.++|++|+|||+||.|+. .|+...|.||+.|||.+|+.. ..+|+|+|||+|.|.+.++|||+
T Consensus 186 ~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~-----~~~Y~L~~vI~H~G~~~~~GHY~ 260 (305)
T cd02657 186 IYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCTP-----SGYYELVAVITHQGRSADSGHYV 260 (305)
T ss_pred eEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccCC-----CCcEEEEEEEEecCCCCCCcEEE
Confidence 99999999999999999999998743 588999999999999999873 56899999999999778999999
Q ss_pred EEEecCC-CCeEEecCC
Q psy1713 382 CIGSTSS-GSYHYFDDE 397 (397)
Q Consensus 382 ~~vr~~~-~~W~~fdDs 397 (397)
||+|.++ ++||+|||+
T Consensus 261 ~~~~~~~~~~W~~fdD~ 277 (305)
T cd02657 261 AWVRRKNDGKWIKFDDD 277 (305)
T ss_pred EEEEcCCCCeEEEEECC
Confidence 9999964 899999996
No 9
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.3e-56 Score=410.19 Aligned_cols=224 Identities=34% Similarity=0.608 Sum_probs=202.1
Q ss_pred CcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHHHHHHHH
Q psy1713 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLI 156 (397)
Q Consensus 77 GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~~~l~~~ 156 (397)
||.|+||||||||+||+|+++|+|+++++. +|..|+..+...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------------~P~~~~~~l~~~ 42 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE--------------------------------------TPKELFSQVCRK 42 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------------CHHHHHHHHHHh
Confidence 999999999999999999999999999975 566677777777
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccccccccccccccc
Q psy1713 157 ARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSA 236 (397)
Q Consensus 157 ~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~~~~~ 236 (397)
.+.|..++||||+|||..||+.|+. .+.++|+|++.+.++|..|++.+.+
T Consensus 43 ~~~f~~~~QqDA~Efl~~lld~l~~--------------------~i~~~F~G~~~~~i~C~~C~~~s~~---------- 92 (279)
T cd02667 43 APQFKGYQQQDSHELLRYLLDGLRT--------------------FIDSIFGGELTSTIMCESCGTVSLV---------- 92 (279)
T ss_pred hHhhcCCchhhHHHHHHHHHHHHHH--------------------hhhhhcceEEEEEEEcCCCCCEeCc----------
Confidence 7889999999999999999999993 3678999999999999999999999
Q ss_pred cCCCCccccccccccccccccCCCCCccceeeeecCC----CCCCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEE
Q psy1713 237 SKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIR----QSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRF 312 (397)
Q Consensus 237 ~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~----~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~ 312 (397)
.|+| +.|+|+++ ...+|++||+.|+.+|.++|+++|.|+.|++ +.++.
T Consensus 93 -------~E~f------------------~~L~Lp~~~~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~ 144 (279)
T cd02667 93 -------YEPF------------------LDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQY 144 (279)
T ss_pred -------cccc------------------eEEecCCCcccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEe
Confidence 9999 99988765 3579999999999999999999999999988 88999
Q ss_pred EeeeCCceEEEEEeecccCC----CCCCcccccCCceeccCccccc----CCCCCcceEEEEEEEeecCCCCCCceEEEE
Q psy1713 313 SVDKPPNVLRLQLKRFNYHG----LKNSRSVQVPLHLEFGKFMHCR----MSHSQLKYKLVSAVIHHGSSPDSGHYTCIG 384 (397)
Q Consensus 313 ~i~~lP~iL~i~l~Rf~~~~----~K~~~~v~fp~~Ldl~~~~~~~----~~~~~~~Y~L~avv~H~G~~~~~GHY~~~v 384 (397)
.|.++|++|+|||+||.++. .|+++.|.||+.|||.+|+... .......|+|+|||+|.|. .++|||+||+
T Consensus 145 ~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~-~~~GHY~a~v 223 (279)
T cd02667 145 LISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGT-MRSGHYVAYV 223 (279)
T ss_pred EhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCC-CCCCEeEEEE
Confidence 99999999999999997753 6999999999999999998762 1234679999999999998 5999999999
Q ss_pred ecC----------------------CCCeEEecCC
Q psy1713 385 STS----------------------SGSYHYFDDE 397 (397)
Q Consensus 385 r~~----------------------~~~W~~fdDs 397 (397)
|.. +++||+|||+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~ 258 (279)
T cd02667 224 KVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDS 258 (279)
T ss_pred EcCccccccccccccccccccCCCCCCcEEEEECC
Confidence 973 6799999996
No 10
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.6e-55 Score=412.85 Aligned_cols=255 Identities=29% Similarity=0.419 Sum_probs=218.3
Q ss_pred CcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcC--------------CC
Q psy1713 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKS--------------GS 142 (397)
Q Consensus 77 GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~--------------~~ 142 (397)
||.|+||||||||+||+|+++|+|+++++...... .+ ....+..+++++|.+++..++... ..
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 77 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKF-PS--DVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQV 77 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhcccc-CC--CcCCccccHHHHHHHHHHHhcCCCcCCCcccccccccccc
Confidence 99999999999999999999999999998733221 11 111223679999999999887532 24
Q ss_pred ccChHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCc
Q psy1713 143 AIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSH 222 (397)
Q Consensus 143 ~~~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~ 222 (397)
.+.|..|+.+++...+.|..++||||||||.+||+.|++++... ....+.++|+|.+...++|..|+.
T Consensus 78 ~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------~~~~~~~~f~~~~~~~i~C~~C~~ 145 (311)
T cd02658 78 GIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------LGLNPNDLFKFMIEDRLECLSCKK 145 (311)
T ss_pred ccCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------ccCCchhheEEEeeEEEEcCCCCC
Confidence 68999999999999999999999999999999999999986421 124578899999999999999999
Q ss_pred cccccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCC--------------CCHHHHHHhcccc
Q psy1713 223 ISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS--------------SSLDEALGHFFAK 288 (397)
Q Consensus 223 ~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~--------------~sL~~~L~~~~~~ 288 (397)
++.+ .++| ..|+|+++.. .+|+++|+.|+.+
T Consensus 146 ~s~~-----------------~e~~------------------~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~ 190 (311)
T cd02658 146 VKYT-----------------SELS------------------EILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAP 190 (311)
T ss_pred EEEe-----------------ecce------------------eEEeeecccccccccccccccCCCCCHHHHHHHHcCc
Confidence 8888 8888 8888777633 4999999999999
Q ss_pred eeeCCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeecccC----CCCCCcccccCCceeccCcccccCCCCCcceEE
Q psy1713 289 EYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYH----GLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKL 364 (397)
Q Consensus 289 E~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~----~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L 364 (397)
|.++ +.|+.|++++.+.++.+|.++|++|+|||+||.++ ..|+...|.||..| ....|+|
T Consensus 191 e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l------------~~~~Y~L 254 (311)
T cd02658 191 ETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEEL------------GPGKYEL 254 (311)
T ss_pred cccc----ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcC------------CCCcEEE
Confidence 9998 68999999999999999999999999999999763 36899999999877 2468999
Q ss_pred EEEEEeecCCCCCCceEEEEecC---CCCeEEecCC
Q psy1713 365 VSAVIHHGSSPDSGHYTCIGSTS---SGSYHYFDDE 397 (397)
Q Consensus 365 ~avv~H~G~~~~~GHY~~~vr~~---~~~W~~fdDs 397 (397)
+|||+|.|.+.++|||++|+|.+ +++||+|||+
T Consensus 255 ~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~ 290 (311)
T cd02658 255 IAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDE 290 (311)
T ss_pred EEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCc
Confidence 99999999878999999999985 3899999996
No 11
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-56 Score=422.23 Aligned_cols=319 Identities=25% Similarity=0.393 Sum_probs=248.4
Q ss_pred CCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHHHHH
Q psy1713 74 AGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKL 153 (397)
Q Consensus 74 ~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~~~l 153 (397)
+.+||+|+||||||||+||||.|+++|++|++...+....++..+...+..++.++..|+++++.....++.|..|...+
T Consensus 264 GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~tI 343 (823)
T COG5560 264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTI 343 (823)
T ss_pred cccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHHH
Confidence 77999999999999999999999999999999998887766656666667799999999999998888999999999999
Q ss_pred HHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCC--CCCC-------------------CCCCCCCccccccCeeec
Q psy1713 154 KLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSS--NKLD-------------------SASKETTPIYQLFGTYLR 212 (397)
Q Consensus 154 ~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~--~~~~-------------------~~~~~~~~i~~~F~g~~~ 212 (397)
+.++..|.++.|||++||+.+|||.||+++++..... .+.+ +..++.++|.++|.|..+
T Consensus 344 G~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyK 423 (823)
T COG5560 344 GSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYK 423 (823)
T ss_pred hhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Confidence 9999999999999999999999999999998654322 1111 123578999999999999
Q ss_pred ceEEeCCCCcccccccccccccccc---------------CCCCcccccccc-------------ccccccccCCCCCc-
Q psy1713 213 TEVTCNSCSHISTQCLFHSRLDSAS---------------KETTPIYQLFGT-------------YLRTEVTCNSCSHI- 263 (397)
Q Consensus 213 ~~~~C~~C~~~s~~~~~~~~~~~~~---------------~~~~~~~e~f~~-------------~~~~~~~c~~c~~~- 263 (397)
+++.|+.|+.++.+ |+|+-+--- ++.. ...+... ++...+.-..|..+
T Consensus 424 STL~Cp~C~~vsit--fDPfmdlTLPLPvs~vw~htiv~fp~~g-~~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~ 500 (823)
T COG5560 424 STLTCPGCGSVSIT--FDPFMDLTLPLPVSMVWKHTIVVFPESG-RRQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIK 500 (823)
T ss_pred ceeeccCcCceeee--ecchhhccccCchhhcccccEEEECCCC-CCCceEEEEeccchHHHHHHHHHHHhccCCcccee
Confidence 99999999999998 333211000 0000 0000000 00000000000000
Q ss_pred ------------------------------------------------------c-------ceeeeecCC---------
Q psy1713 264 ------------------------------------------------------S-------NLELSLDIR--------- 273 (397)
Q Consensus 264 ------------------------------------------------------~-------~~~l~l~i~--------- 273 (397)
+ .+.|.+.++
T Consensus 501 v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvk 580 (823)
T COG5560 501 VMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVK 580 (823)
T ss_pred EEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhHHHHHH
Confidence 0 000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy1713 274 -------------------------------------------------------------------------------- 273 (397)
Q Consensus 274 -------------------------------------------------------------------------------- 273 (397)
T Consensus 581 E~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~ 660 (823)
T COG5560 581 EFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYD 660 (823)
T ss_pred HHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhhhhcCC
Confidence
Q ss_pred ------------CCCCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeecccC---CCCCCcc
Q psy1713 274 ------------QSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYH---GLKNSRS 338 (397)
Q Consensus 274 ------------~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~---~~K~~~~ 338 (397)
...||+|||.+|.++|.+.-.+.|+|+.|+....|+|++.|+++|+||+||||||.+. +.|+.+.
T Consensus 661 ~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddl 740 (823)
T COG5560 661 PLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDL 740 (823)
T ss_pred ccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhh
Confidence 3579999999999999998888999999999999999999999999999999999764 4799999
Q ss_pred cccCC-ceeccCcccccCCCCCcceEEEEEEEeecCCCCCCceEEEEecC-CCCeEEecCC
Q psy1713 339 VQVPL-HLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTS-SGSYHYFDDE 397 (397)
Q Consensus 339 v~fp~-~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~~-~~~W~~fdDs 397 (397)
|+||. .|||+.+...-.+. ...|+|+||=.|+|. .++|||+||+|+. +++||+|||+
T Consensus 741 VeyPiddldLs~~~~~~~~p-~liydlyavDNHygg-lsgGHYtAyarn~~n~~wy~fdDs 799 (823)
T COG5560 741 VEYPIDDLDLSGVEYMVDDP-RLIYDLYAVDNHYGG-LSGGHYTAYARNFANNGWYLFDDS 799 (823)
T ss_pred hccccccccccceEEeecCc-ceEEEeeeccccccc-cCCcceeeeeecccCCceEEecCc
Confidence 99997 69999876554333 489999999999997 9999999999995 7799999996
No 12
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-54 Score=411.67 Aligned_cols=271 Identities=29% Similarity=0.498 Sum_probs=230.3
Q ss_pred CCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHHHHH
Q psy1713 74 AGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKL 153 (397)
Q Consensus 74 ~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~~~l 153 (397)
+.+||.|+||||||||+||+|+++|+|+++++....... .....++.++|+.+|..+.........|..+....
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~------~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~ 74 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTED------DDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTR 74 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCccc------CcccccHHHHHHHHHHHHHhCCccccCcchhheec
Confidence 469999999999999999999999999999998632210 11125689999999998887665555555543111
Q ss_pred HHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCcccccccccccc
Q psy1713 154 KLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRL 233 (397)
Q Consensus 154 ~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~~ 233 (397)
......|..++||||+|||.+||+.|++++... ...+++.++|+|.+...++|..|+..+..
T Consensus 75 ~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~------- 136 (334)
T cd02659 75 SFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT-----------GQEGLIKNLFGGKLVNYIICKECPHESER------- 136 (334)
T ss_pred cCCCCCCCcccchhHHHHHHHHHHHHHHHhccC-----------cccchhhhhCceEEEeEEEecCCCceecc-------
Confidence 112356778999999999999999999986432 13467899999999999999999999988
Q ss_pred ccccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEEE
Q psy1713 234 DSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFS 313 (397)
Q Consensus 234 ~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~~ 313 (397)
.++| +.|+|++++..+|+++|+.|+.+|.+++++.|.|++|++++.+.++..
T Consensus 137 ----------~e~f------------------~~l~l~i~~~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~ 188 (334)
T cd02659 137 ----------EEYF------------------LDLQVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVC 188 (334)
T ss_pred ----------cccc------------------eEEEEEcCCCCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEE
Confidence 9999 999999999999999999999999999999999999999999999999
Q ss_pred eeeCCceEEEEEeecccC-----CCCCCcccccCCceeccCcccccC----------CCCCcceEEEEEEEeecCCCCCC
Q psy1713 314 VDKPPNVLRLQLKRFNYH-----GLKNSRSVQVPLHLEFGKFMHCRM----------SHSQLKYKLVSAVIHHGSSPDSG 378 (397)
Q Consensus 314 i~~lP~iL~i~l~Rf~~~-----~~K~~~~v~fp~~Ldl~~~~~~~~----------~~~~~~Y~L~avv~H~G~~~~~G 378 (397)
|.++|++|+|||+||.++ ..|+...|.||..|||.+++.... ......|+|+|||+|.|+ ..+|
T Consensus 189 i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~G 267 (334)
T cd02659 189 FKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGD-AHGG 267 (334)
T ss_pred eecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCccccccccccccccccccCCCCeeEEEEEEEEecCC-CCCC
Confidence 999999999999999763 368999999999999999886642 344678999999999996 8999
Q ss_pred ceEEEEecC-CCCeEEecCC
Q psy1713 379 HYTCIGSTS-SGSYHYFDDE 397 (397)
Q Consensus 379 HY~~~vr~~-~~~W~~fdDs 397 (397)
||+||+|.. +++||+|||+
T Consensus 268 HY~~~vk~~~~~~W~~~nD~ 287 (334)
T cd02659 268 HYYSYIKDRDDGKWYKFNDD 287 (334)
T ss_pred CeEEEEECCCCCceEEEeCc
Confidence 999999984 7899999996
No 13
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-53 Score=416.41 Aligned_cols=282 Identities=20% Similarity=0.308 Sum_probs=221.2
Q ss_pred CCCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcC--CCccChH
Q psy1713 70 GRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKS--GSAIRPE 147 (397)
Q Consensus 70 ~~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~~~p~ 147 (397)
...++.+||.|+|||||||||||+|+++|+||++++........ .....+++++|..+++++|... ...++|.
T Consensus 114 ~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~-----~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~ 188 (440)
T cd02669 114 PYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENI-----KDRKSELVKRLSELIRKIWNPRNFKGHVSPH 188 (440)
T ss_pred CccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccc-----cCCCcHHHHHHHHHHHHHhccccCCCccCHH
Confidence 34578899999999999999999999999999999976543211 0112469999999999999765 3789999
Q ss_pred HHHHHHHHHh-ccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccccc
Q psy1713 148 LIIKKLKLIA-RHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQ 226 (397)
Q Consensus 148 ~~~~~l~~~~-~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~ 226 (397)
.|+..+.... +.|.+++||||||||.+||+.|++++.... ....+++.++|+|++++.++|..|...+..
T Consensus 189 ~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~---------~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~ 259 (440)
T cd02669 189 ELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK---------KPNSSIIHDCFQGKVQIETQKIKPHAEEEG 259 (440)
T ss_pred HHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC---------CCCCCcceeccCceEEEEEEeecccccccc
Confidence 9999998764 578899999999999999999999975321 124578999999999999999877543211
Q ss_pred cccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCC--------------CCHHHHHHhcccceeeC
Q psy1713 227 CLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS--------------SSLDEALGHFFAKEYLG 292 (397)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~--------------~sL~~~L~~~~~~E~l~ 292 (397)
... ..-.-....+...++| ++|+|+|+.. .+|+++|+.
T Consensus 260 ~~~--~~~~c~~~~s~~~~pF------------------~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~k-------- 311 (440)
T cd02669 260 SKD--KFFKDSRVKKTSVSPF------------------LLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKK-------- 311 (440)
T ss_pred ccc--ccccccccceeeeccc------------------eEEEecCCCCccccccccccccCcccHHHHHHh--------
Confidence 000 0000000111227889 9999999864 355555544
Q ss_pred CCCceecCCCCCcceeEEEEEeeeCCceEEEEEeecccC---CCCCCcccccCCc-eeccCcccccC--CCCCcceEEEE
Q psy1713 293 GDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYH---GLKNSRSVQVPLH-LEFGKFMHCRM--SHSQLKYKLVS 366 (397)
Q Consensus 293 ~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~---~~K~~~~v~fp~~-Ldl~~~~~~~~--~~~~~~Y~L~a 366 (397)
|.|+.|.....++|+..|.++|+||+||||||.++ ..|+.+.|.||.. |||.+|+.... ......|+|+|
T Consensus 312 ----y~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~a 387 (440)
T cd02669 312 ----YDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVA 387 (440)
T ss_pred ----cCCccceecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEE
Confidence 77888888888999999999999999999999775 3699999999996 89999986432 23468999999
Q ss_pred EEEeecCCCCCCceEEEEec-CCCCeEEecCC
Q psy1713 367 AVIHHGSSPDSGHYTCIGST-SSGSYHYFDDE 397 (397)
Q Consensus 367 vv~H~G~~~~~GHY~~~vr~-~~~~W~~fdDs 397 (397)
||+|.|+.+++|||+||+|+ .+|+||+|||+
T Consensus 388 vI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~ 419 (440)
T cd02669 388 NIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDL 419 (440)
T ss_pred EEEEeccCCCCeeEEEEEEcCCCCeEEEEECC
Confidence 99999984499999999997 48899999996
No 14
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-53 Score=369.55 Aligned_cols=304 Identities=23% Similarity=0.365 Sum_probs=225.8
Q ss_pred cccCCccccCCCCCCCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccc-cccCCCcchhHHHHHHHHHHH
Q psy1713 57 ILYSPNKITLGWQGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLC-EKQSGYQFECLVCAMRKTLAH 135 (397)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~-~~~~~~~~~~l~~~l~~l~~~ 135 (397)
.++.+.++..+-....-.+.||.|.|||||||++||||+++..+...++........+ ..+.+....-....+..+...
T Consensus 53 el~nP~~~~~s~~~dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~ 132 (415)
T COG5533 53 ELANPKKMVVSKRKDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYET 132 (415)
T ss_pred hhcCCccchhhhhhcccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhc
Confidence 3444444433322222346999999999999999999999999999665544332111 111221122233444444443
Q ss_pred HHhcCCCccChHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCC--CCCC-------------------
Q psy1713 136 CQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSS--NKLD------------------- 194 (397)
Q Consensus 136 ~~~~~~~~~~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~--~~~~------------------- 194 (397)
+.......++|+.|+..+..+.+.|.+..|||+|||+.++||.||++++...... ..+.
T Consensus 133 ~~~Hg~~sis~~nF~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~E 212 (415)
T COG5533 133 PGCHGPKSISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHE 212 (415)
T ss_pred cccCCCcccchHHHHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhh
Confidence 4444457899999999999999999999999999999999999999976532210 0000
Q ss_pred ---CCCCCCCccccccCeeecceEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCccceeeeec
Q psy1713 195 ---SASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLD 271 (397)
Q Consensus 195 ---~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~ 271 (397)
....+.+.+.+.|.|+..+++.|..|++.|++ +.+| ..|.++
T Consensus 213 Wn~~L~sn~S~v~~~f~gq~~srlqC~~C~~TStT-----------------~a~f------------------s~l~vp 257 (415)
T COG5533 213 WNLHLRSNKSLVAKTFFGQDKSRLQCEACNYTSTT-----------------IAMF------------------STLLVP 257 (415)
T ss_pred hHHhhccchHHHHHHHhhhhhhhhhhhhcCCceeE-----------------Eecc------------------ceeeec
Confidence 01234578899999999999999999999999 9999 888888
Q ss_pred CCCC--CCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeeccc---CCCCCCcc----cccC
Q psy1713 272 IRQS--SSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNY---HGLKNSRS----VQVP 342 (397)
Q Consensus 272 i~~~--~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~---~~~K~~~~----v~fp 342 (397)
++.. ..|+||+++|.++|.++|++.|+|++|+++..++|++.|.++|++||||++||.. .+.|++.. -.+|
T Consensus 258 ~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~ 337 (415)
T COG5533 258 PYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTAS 337 (415)
T ss_pred cchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCC
Confidence 7754 4699999999999999999999999999999999999999999999999999952 23344332 1222
Q ss_pred CceeccCcccccCCCCCcceEEEEEEEeecCCCCCCceEEEEecCCCCeEEecCC
Q psy1713 343 LHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397 (397)
Q Consensus 343 ~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~~~~~W~~fdDs 397 (397)
.+..+.+-...+.+..+.+|+|+|||+|.|+ .++|||+++|+. ++.|+.|||+
T Consensus 338 ~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~-L~gGHY~s~v~~-~~~W~~~dDs 390 (415)
T COG5533 338 VEVNVTLLFNNGIGYIPRKYSLLGVVCHNGT-LNGGHYFSEVKR-SGTWNVYDDS 390 (415)
T ss_pred ceecccccccCCCCCCccceeEEEEEeecce-ecCceeEEeeee-cCceEEechh
Confidence 2222222222233455789999999999997 999999999999 6889999996
No 15
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.2e-49 Score=353.92 Aligned_cols=187 Identities=34% Similarity=0.638 Sum_probs=168.5
Q ss_pred CcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHHHHHHHH
Q psy1713 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLI 156 (397)
Q Consensus 77 GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~~~l~~~ 156 (397)
||.|+||||||||+||+|+++|+|++++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999999986421
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCcccc-cccccccccc
Q psy1713 157 ARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHIST-QCLFHSRLDS 235 (397)
Q Consensus 157 ~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~-~~~~~~~~~~ 235 (397)
+||||||||..||+.|+.. +.++|.|.+.+.++|..|++.+. +
T Consensus 33 -------~QqDa~EFl~~ll~~l~~~--------------------i~~~F~g~~~~~i~C~~C~~~s~~~--------- 76 (240)
T cd02662 33 -------EQQDAHELFQVLLETLEQL--------------------LKFPFDGLLASRIVCLQCGESSKVR--------- 76 (240)
T ss_pred -------hhcCHHHHHHHHHHHHHHh--------------------ccCccccEEEEEEEeCCCCCccCcc---------
Confidence 8999999999999999932 56799999999999999999855 5
Q ss_pred ccCCCCccccccccccccccccCCCCCccceeeeecCCCC-----CCHHHHHHhcccceeeCCCCceecCCCCCcceeEE
Q psy1713 236 ASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS-----SSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATK 310 (397)
Q Consensus 236 ~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~-----~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k 310 (397)
.|+| +.|+|+++.. .+|+++|+.|+.+|.+++ +.|++|
T Consensus 77 --------~e~f------------------~~LsL~ip~~~~~~~~sl~~~L~~~~~~E~l~~---~~C~~C-------- 119 (240)
T cd02662 77 --------YESF------------------TMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDD---YKCDRC-------- 119 (240)
T ss_pred --------eeee------------------eeeEecccccCCCCCCCHHHHHHHhcCcccccC---cCCCCC--------
Confidence 7899 9999999864 699999999999999987 999999
Q ss_pred EEEeeeCCceEEEEEeecccCC----CCCCcccccCCceeccCcccccCCCCCcceEEEEEEEeecCCCCCCceEEEEec
Q psy1713 311 RFSVDKPPNVLRLQLKRFNYHG----LKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGST 386 (397)
Q Consensus 311 ~~~i~~lP~iL~i~l~Rf~~~~----~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~ 386 (397)
+..|.++|++|+|||+||.++. .|+++.|.||+.| ....|+|+|||+|.|. .++|||+||+|.
T Consensus 120 ~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l------------~~~~Y~L~avi~H~G~-~~~GHY~~~~k~ 186 (240)
T cd02662 120 QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL------------PKVLYRLRAVVVHYGS-HSSGHYVCYRRK 186 (240)
T ss_pred eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc------------CCceEEEEEEEEEecc-CCCceEEEEEeC
Confidence 6679999999999999997654 6999999999988 2678999999999998 599999999998
Q ss_pred C---------------------CCCeEEecCC
Q psy1713 387 S---------------------SGSYHYFDDE 397 (397)
Q Consensus 387 ~---------------------~~~W~~fdDs 397 (397)
+ .++||+|||+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~ 218 (240)
T cd02662 187 PLFSKDKEPGSFVRMREGPSSTSHPWWRISDT 218 (240)
T ss_pred CCcccccccccccccccccCccCCCEEEEech
Confidence 5 3899999996
No 16
>KOG0944|consensus
Probab=100.00 E-value=3.7e-47 Score=361.34 Aligned_cols=228 Identities=26% Similarity=0.429 Sum_probs=193.2
Q ss_pred CCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcC----------C
Q psy1713 72 VPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKS----------G 141 (397)
Q Consensus 72 ~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~----------~ 141 (397)
.|+.+||+|+||+||||||+|+|+.+|.|....+.. .....+ ...++..++-|+|.+++..|.... +
T Consensus 304 gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~-~~~f~~--~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~q 380 (763)
T KOG0944|consen 304 GPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQ-ERIFNC--YPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQ 380 (763)
T ss_pred CCCccceeecCcchhHHHHHHHheecccHHHhhccc-cceeec--CCCCcchhHHHHHHHHHHHhhcCcccCccCCcccc
Confidence 467899999999999999999999999999988776 222222 233345679999999999987543 2
Q ss_pred CccChHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCC
Q psy1713 142 SAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCS 221 (397)
Q Consensus 142 ~~~~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~ 221 (397)
..++|..|+..+++-++.|..++||||+|||.+||+.|.+..... ...+.++|...+..++.|..|+
T Consensus 381 ngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~-------------~~nptd~frF~ve~Rv~C~~c~ 447 (763)
T KOG0944|consen 381 NGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSS-------------LPNPTDLFRFEVEDRVSCLGCR 447 (763)
T ss_pred CCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccccc-------------CCCHHHHHHhhhhhhhhhhccc
Confidence 478999999999999999999999999999999999999864221 1568899999999999999999
Q ss_pred ccccccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCC------CCCCHHHHHHhcccceeeCCCC
Q psy1713 222 HISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIR------QSSSLDEALGHFFAKEYLGGDN 295 (397)
Q Consensus 222 ~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~------~~~sL~~~L~~~~~~E~l~~~~ 295 (397)
+++.+ ++.- ..+.|+++ ....+..||+.|+.+ .+++
T Consensus 448 kVrYs-----------------~~~~------------------~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~d-- 489 (763)
T KOG0944|consen 448 KVRYS-----------------YESE------------------YLIQLPVPMTNEVREKVPISACLEAFFEP-QVDD-- 489 (763)
T ss_pred ccccc-----------------chhh------------------eeeEeeccccccccccCCHHHHHHHhcCC-cchh--
Confidence 99988 7666 66666664 456999999999999 4443
Q ss_pred ceecCCCCCcceeEEEEEeeeCCceEEEEEeecc---cCCCCCCcccccCCceeccCccccc
Q psy1713 296 LYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFN---YHGLKNSRSVQVPLHLEFGKFMHCR 354 (397)
Q Consensus 296 ~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~---~~~~K~~~~v~fp~~Ldl~~~~~~~ 354 (397)
|.|..|+.+..|+|+..|.++|++|+||+.||. |...|+...+++|+.||++.|+...
T Consensus 490 -f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~rs~g 550 (763)
T KOG0944|consen 490 -FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYRSKG 550 (763)
T ss_pred -hhhHhhcCccccccccccccCCceEEEEeeEEEecCceeeeeccceecchhhchhhhhhcC
Confidence 999999999999999999999999999999994 5568999999999999999887654
No 17
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-46 Score=337.30 Aligned_cols=198 Identities=38% Similarity=0.671 Sum_probs=182.1
Q ss_pred CcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHHHHHHHH
Q psy1713 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLI 156 (397)
Q Consensus 77 GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~~~l~~~ 156 (397)
||.|.||+||+||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999998
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccccccccccccccc
Q psy1713 157 ARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSA 236 (397)
Q Consensus 157 ~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~~~~~ 236 (397)
+||||+||+.+||+.|+. .+.++|+|.+...++|..|+..+..
T Consensus 21 -------~QqDa~Ef~~~ll~~l~~--------------------~i~~~F~~~~~~~~~C~~C~~~~~~---------- 63 (230)
T cd02674 21 -------DQQDAQEFLLFLLDGLHS--------------------IIVDLFQGQLKSRLTCLTCGKTSTT---------- 63 (230)
T ss_pred -------hhhhHHHHHHHHHHHHhh--------------------hHHheeCCEEeCcEEcCCCcCCcce----------
Confidence 899999999999999992 4678999999999999999999988
Q ss_pred cCCCCccccccccccccccccCCCCCccceeeeecCCCC------CCHHHHHHhcccceeeCCCCceecCCCCCcceeEE
Q psy1713 237 SKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS------SSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATK 310 (397)
Q Consensus 237 ~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~------~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k 310 (397)
.++| +.|.|+++.. .+|+++|+.++.+|.++|.+++.|++|++.+.+.+
T Consensus 64 -------~e~~------------------~~l~l~ip~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~ 118 (230)
T cd02674 64 -------FEPF------------------TYLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATK 118 (230)
T ss_pred -------ecce------------------eEEEEecccccCCCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEE
Confidence 9999 9999998764 49999999999999999999999999999999999
Q ss_pred EEEeeeCCceEEEEEeecccC---CCCCCcccccCC-ceeccCcccccCCCCCcceEEEEEEEeecCCCCCCceEEEEec
Q psy1713 311 RFSVDKPPNVLRLQLKRFNYH---GLKNSRSVQVPL-HLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGST 386 (397)
Q Consensus 311 ~~~i~~lP~iL~i~l~Rf~~~---~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~ 386 (397)
+..|.++|++|+|||+||.++ ..|+...|.||. .||+.+|+.........+|+|+|||+|.|. ..+|||+||+|.
T Consensus 119 ~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~~~~ 197 (230)
T cd02674 119 KLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGS-LNGGHYTAYCKN 197 (230)
T ss_pred EEEEecCChhhEeEhhheecCCCCcccCCceEeccccccccccccCcccCCCCceEEEEEEEEeeCC-CCCcEEEEEEEC
Confidence 999999999999999999876 689999999995 699998865555566789999999999998 499999999999
Q ss_pred CC-CCeEEecCC
Q psy1713 387 SS-GSYHYFDDE 397 (397)
Q Consensus 387 ~~-~~W~~fdDs 397 (397)
.+ ++||+|||+
T Consensus 198 ~~~~~W~~fnD~ 209 (230)
T cd02674 198 NETNDWYKFDDS 209 (230)
T ss_pred CCCCceEEEcCC
Confidence 64 899999996
No 18
>KOG1868|consensus
Probab=100.00 E-value=3.6e-47 Score=373.96 Aligned_cols=288 Identities=28% Similarity=0.423 Sum_probs=237.2
Q ss_pred CCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcC-CCccChHHHH
Q psy1713 72 VPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKS-GSAIRPELII 150 (397)
Q Consensus 72 ~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~~~p~~~~ 150 (397)
..+.+||.|+|||||||++||||+.++.|+..++...+..... .........+..+..+++..++... ...+.|+.|+
T Consensus 298 ~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~ 376 (653)
T KOG1868|consen 298 VFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFIN-LDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFI 376 (653)
T ss_pred ccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcc-cCCcccchhHHHHHHHhhhhhccCCCceecCcHHHH
Confidence 4467999999999999999999999999997777665444322 1222223458888899998888774 4789999999
Q ss_pred HHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCC--CC-----------CC-----------CCCCCCCCccccc
Q psy1713 151 KKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPS--SN-----------KL-----------DSASKETTPIYQL 206 (397)
Q Consensus 151 ~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~--~~-----------~~-----------~~~~~~~~~i~~~ 206 (397)
..+..+.+.|.++.|||||||+.++++.||+++...... .. .+ .......+.|.++
T Consensus 377 ~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~l 456 (653)
T KOG1868|consen 377 RVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGDL 456 (653)
T ss_pred HHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHHH
Confidence 999999999999999999999999999999999875321 00 00 0112244558999
Q ss_pred cCeeecceEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCC------CCCHHH
Q psy1713 207 FGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQ------SSSLDE 280 (397)
Q Consensus 207 F~g~~~~~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~------~~sL~~ 280 (397)
|.|++.+.++|..|+..+.+ +++| .+++|+|+. ..+|++
T Consensus 457 f~gQ~ks~Lkc~~cg~~s~t-----------------~~~f------------------~~lslpIp~~~~~~~~~~L~~ 501 (653)
T KOG1868|consen 457 FVGQLKSYLKCQACGYTSTT-----------------FETF------------------TDLSLPIPKKGFAGGKVSLED 501 (653)
T ss_pred HHHHHHhheehhhcCCccee-----------------eecc------------------eeeEEecccccccccccchHh
Confidence 99999999999999999999 9999 999988874 356999
Q ss_pred HHHhcccceeeCCCCceecCCCCCcceeE--EEEEeeeCCceEEEEEeecccC---CCCCCcccccCC-ceeccCccccc
Q psy1713 281 ALGHFFAKEYLGGDNLYRCEKCGRKVEAT--KRFSVDKPPNVLRLQLKRFNYH---GLKNSRSVQVPL-HLEFGKFMHCR 354 (397)
Q Consensus 281 ~L~~~~~~E~l~~~~~~~C~~C~~~~~~~--k~~~i~~lP~iL~i~l~Rf~~~---~~K~~~~v~fp~-~Ldl~~~~~~~ 354 (397)
|+..|++.|.+++++.|.|++|+++.... |+..|+++|++|+|||+||.++ ..|....|+||. ..++.++...
T Consensus 502 C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~- 580 (653)
T KOG1868|consen 502 CLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAE- 580 (653)
T ss_pred hhccccchhhcccccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccc-
Confidence 99999999999999999999999999885 9999999999999999999766 368888999998 5667663333
Q ss_pred CCCCCcceEEEEEEEeecCCCCCCceEEEEecC-CCCeEEecCC
Q psy1713 355 MSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTS-SGSYHYFDDE 397 (397)
Q Consensus 355 ~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~~-~~~W~~fdDs 397 (397)
.+.....|+|+|||+|.|+ .++|||+|||+.. .+.|+.|||+
T Consensus 581 ~~~~~~~Y~L~aVv~H~Gt-l~sGHYta~~~~~~~~~W~~fdDs 623 (653)
T KOG1868|consen 581 KGNNPKSYRLYAVVNHSGT-LNSGHYTAYVYKNEKQRWFTFDDS 623 (653)
T ss_pred cCCCccceeeEEEEeccCc-ccCCceEEEEeecCCCceEEecCe
Confidence 2333556999999999995 9999999999774 7889999996
No 19
>KOG1866|consensus
Probab=100.00 E-value=1.3e-46 Score=359.90 Aligned_cols=276 Identities=30% Similarity=0.490 Sum_probs=240.6
Q ss_pred CCCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHH
Q psy1713 70 GRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELI 149 (397)
Q Consensus 70 ~~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~ 149 (397)
+...+.+||+|-|+|||||+++|-|.++|.++..+....... ..+...+ +..+++.++.+|..+..+.-+.+-|..|
T Consensus 90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~t-d~pd~s~--~e~vl~~lQ~iF~hL~~s~lQyyVPeg~ 166 (944)
T KOG1866|consen 90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTT-DLPDMSG--DEKVLRHLQVIFGHLAASQLQYYVPEGF 166 (944)
T ss_pred CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccc-cchhhcc--hHHHHHHHHHHHHHHHHHhhhhhcchhH
Confidence 445567999999999999999999999999999888766552 1111222 1239999999999998888899999999
Q ss_pred HHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCcccccccc
Q psy1713 150 IKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLF 229 (397)
Q Consensus 150 ~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~ 229 (397)
.+.++.-....+..+||||-|||..|||.+.+.+.... ....+...|+|.....-.|..|.|....
T Consensus 167 Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg-----------~p~lf~n~f~G~ysdqKIC~~CpHRY~~--- 232 (944)
T KOG1866|consen 167 WKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLG-----------HPQLFSNTFGGSYSDQKICQGCPHRYEC--- 232 (944)
T ss_pred HHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhC-----------CcHHHHHHhcCccchhhhhccCCcccCc---
Confidence 99988777777889999999999999999999876532 3456788999999999999999999988
Q ss_pred ccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhcccceeeCCCCceecCCCCCcceeE
Q psy1713 230 HSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEAT 309 (397)
Q Consensus 230 ~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~ 309 (397)
.|+| ..|+|+|. ..+|+++|++|.+.|.++|.|.|+|++|+++....
T Consensus 233 --------------eE~F------------------~~l~l~i~-~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~Tv 279 (944)
T KOG1866|consen 233 --------------EESF------------------TTLNLDIR-HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTV 279 (944)
T ss_pred --------------cccc------------------eeeeeecc-cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhH
Confidence 9999 99999999 89999999999999999999999999999999999
Q ss_pred EEEEeeeCCceEEEEEeecccC-----CCCCCcccccCCceeccCcccccC----------------CCCCcceEEEEEE
Q psy1713 310 KRFSVDKPPNVLRLQLKRFNYH-----GLKNSRSVQVPLHLEFGKFMHCRM----------------SHSQLKYKLVSAV 368 (397)
Q Consensus 310 k~~~i~~lP~iL~i~l~Rf~~~-----~~K~~~~v~fp~~Ldl~~~~~~~~----------------~~~~~~Y~L~avv 368 (397)
|++.|.+||.+|.|||+||+|+ ..|.+..++||.+|||.+|+..+. .....+|+|+||+
T Consensus 280 kRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVl 359 (944)
T KOG1866|consen 280 KRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVL 359 (944)
T ss_pred HHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEE
Confidence 9999999999999999999774 369999999999999999986531 1456799999999
Q ss_pred EeecCCCCCCceEEEEec----CCCCeEEecC
Q psy1713 369 IHHGSSPDSGHYTCIGST----SSGSYHYFDD 396 (397)
Q Consensus 369 ~H~G~~~~~GHY~~~vr~----~~~~W~~fdD 396 (397)
+|.|. +.+|||++|++. ..++||+|||
T Consensus 360 vHSGq-AsaGHYySfIk~rr~~~~~kWykfnD 390 (944)
T KOG1866|consen 360 VHSGQ-ASAGHYYSFIKQRRGEDGNKWYKFND 390 (944)
T ss_pred Eeccc-ccCcchhhhhhhhccCCCCceEeccC
Confidence 99998 999999999975 2679999999
No 20
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.6e-44 Score=333.15 Aligned_cols=255 Identities=22% Similarity=0.313 Sum_probs=197.2
Q ss_pred CCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccc----------cccccCC-----CcchhHHHHHHHHHHHHHhc
Q psy1713 75 GAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQT----------LCEKQSG-----YQFECLVCAMRKTLAHCQAK 139 (397)
Q Consensus 75 ~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~----------~~~~~~~-----~~~~~l~~~l~~l~~~~~~~ 139 (397)
|+||.|+||||||||+||+|+++|+||++++....... ....... ....+++.+|+.+|..|+..
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 69999999999999999999999999999998652211 0000000 01236999999999999988
Q ss_pred CCCccChHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCC--CCCCCCCCCCccccccCeeecceEEe
Q psy1713 140 SGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSN--KLDSASKETTPIYQLFGTYLRTEVTC 217 (397)
Q Consensus 140 ~~~~~~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~--~~~~~~~~~~~i~~~F~g~~~~~~~C 217 (397)
....+.|..++..+.. .||||+||+..||+.|+.++........ ..+......+.|.++|.|++.+.++|
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c 152 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVP 152 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEe
Confidence 8899999999886652 8999999999999999999764321100 01112234678999999999999999
Q ss_pred CCCC---ccccccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCC----------CCCHHHHHHh
Q psy1713 218 NSCS---HISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQ----------SSSLDEALGH 284 (397)
Q Consensus 218 ~~C~---~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~----------~~sL~~~L~~ 284 (397)
..|+ ..+.+ .|+| ++|+++|+. ..+|.++|+.
T Consensus 153 ~~~~~~~~~s~~-----------------~E~F------------------~~L~l~I~~~~~~~~~~~~~~~L~d~L~~ 197 (343)
T cd02666 153 ESMGNQPSVRTK-----------------TERF------------------LSLLVDVGKKGREIVVLLEPKDLYDALDR 197 (343)
T ss_pred cccCCCCCCccc-----------------ccee------------------EEEEEecCcccccccccCCCCCHHHHHHH
Confidence 9987 67777 9999 999999985 6899999999
Q ss_pred cccceeeCCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeeccc---CCCCCCcccccCCceeccCcccccC------
Q psy1713 285 FFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNY---HGLKNSRSVQVPLHLEFGKFMHCRM------ 355 (397)
Q Consensus 285 ~~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~---~~~K~~~~v~fp~~Ldl~~~~~~~~------ 355 (397)
|++.|. |.++|++|.|||+ +++ ...+..++.++|...+..+++....
T Consensus 198 ~~~~e~-----------------------~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~ 253 (343)
T cd02666 198 YFDYDS-----------------------LTKLPQRSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESS 253 (343)
T ss_pred hcChhh-----------------------hccCCHHHHHHHh-hcccccchheeeccccccchHHHHHHHHHHHHHHHHH
Confidence 998875 7799999999998 322 2345555666666555544432211
Q ss_pred ---------------------CCCCcceEEEEEEEeecCCCCCCceEEEEecC-CCCeEEecCC
Q psy1713 356 ---------------------SHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTS-SGSYHYFDDE 397 (397)
Q Consensus 356 ---------------------~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~~-~~~W~~fdDs 397 (397)
......|+|+|||+|.|. .++|||++|+|.. ++.||+|||+
T Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~~dD~ 316 (343)
T cd02666 254 LVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFIHRGE-ASSGHYWVYIKDFEENVWRKYNDE 316 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEEeecC-CCCCeEEEEEEECCCCeEEEEECC
Confidence 125788999999999998 6999999999984 5899999995
No 21
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-44 Score=346.54 Aligned_cols=269 Identities=25% Similarity=0.423 Sum_probs=232.6
Q ss_pred CCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHH
Q psy1713 71 RVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELII 150 (397)
Q Consensus 71 ~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~ 150 (397)
...+.+||+|.|.||||||.||+|+.+..||+.+...+... +.+ ...+..+|+++|..|+... .+++..+|.
T Consensus 189 keTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~-----p~g--rdSValaLQr~Fynlq~~~-~PvdTtelt 260 (1089)
T COG5077 189 KETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDH-----PRG--RDSVALALQRLFYNLQTGE-EPVDTTELT 260 (1089)
T ss_pred cceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCC-----CCc--cchHHHHHHHHHHHHhccC-CCcchHHhh
Confidence 44678999999999999999999999999999998765332 111 1337789999999887654 789999988
Q ss_pred HHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccccccccc
Q psy1713 151 KKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFH 230 (397)
Q Consensus 151 ~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~ 230 (397)
..++ +..+....|+|.|||-..|+|.|+..+.... -...+..+|-|++.+.+.|.+-..++.+
T Consensus 261 rsfg--Wds~dsf~QHDiqEfnrVl~DnLEksmrgt~-----------VEnaln~ifVgkmksyikCvnvnyEsar---- 323 (1089)
T COG5077 261 RSFG--WDSDDSFMQHDIQEFNRVLQDNLEKSMRGTV-----------VENALNGIFVGKMKSYIKCVNVNYESAR---- 323 (1089)
T ss_pred hhcC--cccchHHHHHhHHHHHHHHHHHHHHhhcCCh-----------hhhHHhHHHHHHhhceeeEEEechhhhh----
Confidence 7766 4567788999999999999999998643211 2345788999999999999999999999
Q ss_pred cccccccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhcccceeeCCCCceecCCCCCcceeEE
Q psy1713 231 SRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATK 310 (397)
Q Consensus 231 ~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k 310 (397)
.|.| |++.|++++..+|+|.++.|.+.|.++|+|+|.|+.-| -+.|.|
T Consensus 324 -------------vedf------------------wdiqlNvK~~knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkK 371 (1089)
T COG5077 324 -------------VEDF------------------WDIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKK 371 (1089)
T ss_pred -------------HHHH------------------HHHHhcccchhhHHHHHHHhhhheeccCCccccccccc-chhhcc
Confidence 9999 99999999999999999999999999999999999854 568999
Q ss_pred EEEeeeCCceEEEEEeecccC-----CCCCCcccccCCceeccCcccccCC---CCCcceEEEEEEEeecCCCCCCceEE
Q psy1713 311 RFSVDKPPNVLRLQLKRFNYH-----GLKNSRSVQVPLHLEFGKFMHCRMS---HSQLKYKLVSAVIHHGSSPDSGHYTC 382 (397)
Q Consensus 311 ~~~i~~lP~iL~i~l~Rf~~~-----~~K~~~~v~fp~~Ldl~~~~~~~~~---~~~~~Y~L~avv~H~G~~~~~GHY~~ 382 (397)
...|.++|+||.+|||||+|+ ..|++++.+||+++||.+|+..... +....|.|+||++|.|. ...|||+|
T Consensus 372 GViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsGD-l~~GHyYa 450 (1089)
T COG5077 372 GVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGD-LHEGHYYA 450 (1089)
T ss_pred ceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhhcccCcEEEEEEEEEeccc-cCCceEEE
Confidence 999999999999999999774 4699999999999999999987543 44589999999999997 99999999
Q ss_pred EEecC-CCCeEEecCC
Q psy1713 383 IGSTS-SGSYHYFDDE 397 (397)
Q Consensus 383 ~vr~~-~~~W~~fdDs 397 (397)
++|.+ +|+||+|||+
T Consensus 451 llKpe~dg~WykfdDt 466 (1089)
T COG5077 451 LLKPEKDGRWYKFDDT 466 (1089)
T ss_pred EeccccCCCceeecce
Confidence 99964 9999999995
No 22
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-43 Score=310.83 Aligned_cols=195 Identities=23% Similarity=0.367 Sum_probs=164.8
Q ss_pred CcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHHHHHHHH
Q psy1713 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLI 156 (397)
Q Consensus 77 GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~~~l~~~ 156 (397)
||.|.|||||+|++.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999976
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccccccccccccccc
Q psy1713 157 ARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSA 236 (397)
Q Consensus 157 ~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~~~~~ 236 (397)
.||||+||+..||+.|++++...... .....+..++|.++|+|++.+...| |+..+.+
T Consensus 21 -------~QQDa~Ef~~~Lld~Le~~l~~~~~~---~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~---------- 78 (228)
T cd02665 21 -------QQQDVSEFTHLLLDWLEDAFQAAAEA---ISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCN---------- 78 (228)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhcccccc---ccccccccchHhhceEEEEEEEEEE--CCCcccc----------
Confidence 79999999999999999997543211 0011235678999999999977766 7777888
Q ss_pred cCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEEEeee
Q psy1713 237 SKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDK 316 (397)
Q Consensus 237 ~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~ 316 (397)
.|+| ++|+|+|.+..+|++||+.++.+|.+++++.+ . ...+.++..|.+
T Consensus 79 -------~E~F------------------~~L~l~i~~~~~L~e~L~~~~~ee~l~~~~~~---~---~~~~~~~~~i~~ 127 (228)
T cd02665 79 -------CETF------------------GQYPLQVNGYGNLHECLEAAMFEGEVELLPSD---H---SVKSGQERWFTE 127 (228)
T ss_pred -------cCcc------------------EEEEEEECCCCCHHHHHHHhhhhccccccccc---c---hhhhhhhhhhhh
Confidence 9999 99999999999999999999999999874332 2 234566778999
Q ss_pred CCceEEEEEeecccC---CCCCCcccccCCceeccCcccccCCCCCcceEEEEEEEeecCCCCCCceEEEEecC-CCCeE
Q psy1713 317 PPNVLRLQLKRFNYH---GLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTS-SGSYH 392 (397)
Q Consensus 317 lP~iL~i~l~Rf~~~---~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~~-~~~W~ 392 (397)
+|++|+|||+||.|+ ..|+.+.|.||..| ....|+|+|||+|.|. +++|||++|+|.. +++||
T Consensus 128 lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l------------~~~~Y~L~aVi~H~G~-~~~GHY~~~i~~~~~~~W~ 194 (228)
T cd02665 128 LPPVLTFELSRFEFNQGRPEKIHDKLEFPQII------------QQVPYELHAVLVHEGQ-ANAGHYWAYIYKQSRQEWE 194 (228)
T ss_pred CChhhEEEeEeeEEcCCccEECCEEEEeeCcc------------CCceeEEEEEEEecCC-CCCCEEEEEEEcCCCCEEE
Confidence 999999999999875 47999999999887 1458999999999998 8999999999864 88999
Q ss_pred EecCC
Q psy1713 393 YFDDE 397 (397)
Q Consensus 393 ~fdDs 397 (397)
+|||+
T Consensus 195 ~fdD~ 199 (228)
T cd02665 195 KYNDI 199 (228)
T ss_pred EEECC
Confidence 99996
No 23
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.5e-43 Score=313.37 Aligned_cols=216 Identities=24% Similarity=0.354 Sum_probs=170.8
Q ss_pred cccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHh
Q psy1713 78 LVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLIA 157 (397)
Q Consensus 78 L~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~~~l~~~~ 157 (397)
|.|.||.||+|+.+|+|.++ ++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i--------------------------------------------------------~~~~ 25 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSI--------------------------------------------------------GKIN 25 (245)
T ss_pred ceecCCeeeehhHHHHHHHH--------------------------------------------------------hhhh
Confidence 78999999999999998533 2334
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCcccccccccccccccc
Q psy1713 158 RHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSAS 237 (397)
Q Consensus 158 ~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~~~~~~ 237 (397)
+.|.+++||||||||++|||.|++++....+...... .........++|+|.+++.++|..|++++.+
T Consensus 26 ~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~-~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~----------- 93 (245)
T cd02673 26 TEFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSN-IEIKRLNPLEAFKYTIESSYVCIGCSFEENV----------- 93 (245)
T ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCc-ccccccCHhHheeeEEEeEEEecCCCCeeee-----------
Confidence 6688999999999999999999998755332111000 0111123457899999999999999999999
Q ss_pred CCCCccccccccccccccccCCCCCccceeeeecCCCC--CCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEEEee
Q psy1713 238 KETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS--SSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVD 315 (397)
Q Consensus 238 ~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~--~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~ 315 (397)
.++| ++|+|+++.. ..++++++.|...+.++ +.|++|++. .+.++.+|.
T Consensus 94 ------~e~~------------------~~L~L~i~~~~~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~ 144 (245)
T cd02673 94 ------SDVG------------------NFLDVSMIDNKLDIDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIM 144 (245)
T ss_pred ------cccc------------------ceeccccccCCcchHHHHHHHhhcccccC----ccCCCCCCc-cceeechhh
Confidence 9999 9999999863 67888888888877776 899999986 788889999
Q ss_pred eCCceEEEEEeecccCCCCCCcccccCCceeccCcccccCCCCCcceEEEEEEEeecCCCCCCceEEEEecC--CCCeEE
Q psy1713 316 KPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTS--SGSYHY 393 (397)
Q Consensus 316 ~lP~iL~i~l~Rf~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~~--~~~W~~ 393 (397)
++|++|+|||+||.+.. +....+.+ ..+++.+++. ....|+|+|||+|.|.+.++|||+||+|.. +|+||+
T Consensus 145 ~~P~vL~i~lkRf~~~~-~~~~~~~~-~~~~~~~~~~-----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~ 217 (245)
T cd02673 145 TFPECLSINLKRYKLRI-ATSDYLKK-NEEIMKKYCG-----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLY 217 (245)
T ss_pred hCChhhEEeeEeeeecc-cccccccc-cccccccccC-----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEE
Confidence 99999999999997643 22222222 2456666664 256799999999999878999999999984 589999
Q ss_pred ecCC
Q psy1713 394 FDDE 397 (397)
Q Consensus 394 fdDs 397 (397)
|||+
T Consensus 218 fnD~ 221 (245)
T cd02673 218 CSDD 221 (245)
T ss_pred eeCc
Confidence 9996
No 24
>KOG1867|consensus
Probab=100.00 E-value=1.1e-42 Score=336.73 Aligned_cols=279 Identities=30% Similarity=0.502 Sum_probs=242.1
Q ss_pred CCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcC-CCccChHHHHHH
Q psy1713 74 AGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKS-GSAIRPELIIKK 152 (397)
Q Consensus 74 ~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~~~p~~~~~~ 152 (397)
+.+||.|+|+|||||++||+|.+.+..++..+...+..+ +......|+.+++.+++..++... ...+.|..++..
T Consensus 160 ~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~----~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~ 235 (492)
T KOG1867|consen 160 GLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKE----PSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNL 235 (492)
T ss_pred cccccccccHHHHHHHHHHHhhccchhhccchhhhcccC----CCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHH
Confidence 458999999999999999999999988888877665521 222224789999999999999998 899999999999
Q ss_pred HHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCC--CCCC--CCCCccccccCeeecceEEeCCCCccccccc
Q psy1713 153 LKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKL--DSAS--KETTPIYQLFGTYLRTEVTCNSCSHISTQCL 228 (397)
Q Consensus 153 l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~--~~~~--~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~ 228 (397)
+.+..+.+.+++|||||||+..+++.++.+. ....+. .... .-.+++...|.|.+...++|..|+..+.+
T Consensus 236 ~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~----~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~-- 309 (492)
T KOG1867|consen 236 VWKHSPNLAGYEQQDAHEFLIALLDRLHREK----DDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTT-- 309 (492)
T ss_pred HHHhCcccccccccchHHHHHHhcccccccc----cccccccccccCCcccccccceeecceeccceeehhhcceeee--
Confidence 9999999999999999999999999999987 111111 1111 23678999999999999999999999988
Q ss_pred cccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCC----------CCHHHHHHhcccceeeCCCCcee
Q psy1713 229 FHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS----------SSLDEALGHFFAKEYLGGDNLYR 298 (397)
Q Consensus 229 ~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~----------~sL~~~L~~~~~~E~l~~~~~~~ 298 (397)
+++| ++|+|+|+.. .++.++++.+...|....+.++.
T Consensus 310 ---------------~dpf------------------~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~ 356 (492)
T KOG1867|consen 310 ---------------YDPF------------------MDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYK 356 (492)
T ss_pred ---------------ccCc------------------cceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccc
Confidence 9999 9999999743 67999999999999888888999
Q ss_pred cCCCCCcceeEEEEEeeeCCceEEEEEeecccCC----CCCCcccccCCceeccCcccccC----CCCCcceEEEEEEEe
Q psy1713 299 CEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHG----LKNSRSVQVPLHLEFGKFMHCRM----SHSQLKYKLVSAVIH 370 (397)
Q Consensus 299 C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~~----~K~~~~v~fp~~Ldl~~~~~~~~----~~~~~~Y~L~avv~H 370 (397)
|..|+.++.++|+..+.++|.+|.+|++||.|.. .|++..|.||..|+|.+|+..+. +.....|+|.|||+|
T Consensus 357 c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H 436 (492)
T KOG1867|consen 357 CSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVH 436 (492)
T ss_pred cCCcccccccccccccccCCceeeeeeccccccccccccccCcccccchhhcCCccccccccccCCCCCceEEEEEEEEe
Confidence 9999999999999999999999999999997742 39999999999999999987621 234689999999999
Q ss_pred ecCCCCCCceEEEEecCCCCeEEecCC
Q psy1713 371 HGSSPDSGHYTCIGSTSSGSYHYFDDE 397 (397)
Q Consensus 371 ~G~~~~~GHY~~~vr~~~~~W~~fdDs 397 (397)
+|+ .++|||+||+|. .+.|++|||+
T Consensus 437 ~G~-~~SGHY~aY~r~-~~~~~~~dDs 461 (492)
T KOG1867|consen 437 HGT-VGSGHYVAYRRQ-SGGWFKCDDS 461 (492)
T ss_pred ccC-CCCCceEEEEEe-CCCcEEEcCe
Confidence 998 999999999999 7789999996
No 25
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1e-42 Score=319.80 Aligned_cols=235 Identities=32% Similarity=0.574 Sum_probs=173.7
Q ss_pred CCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhc--CCCccChHHHHHH
Q psy1713 75 GAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAK--SGSAIRPELIIKK 152 (397)
Q Consensus 75 ~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~~~~~~p~~~~~~ 152 (397)
|+||.|.||||||||+||+|+++|+|+++|+..................+++++|+.++..++.. ....+.|..++.+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 58999999999999999999999999999997632221111122222346999999999999987 6689999999999
Q ss_pred HHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccccccccccc
Q psy1713 153 LKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSR 232 (397)
Q Consensus 153 l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~ 232 (397)
++...+.|..++||||+|||..||+.|+++..................+.+.++|.+.+...+.|..|+.
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~---------- 150 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKN---------- 150 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTC----------
T ss_pred ccccccccccccccchhhhhcccccccchhhccccccccccccccccccccccccccccccccccccccc----------
Confidence 9999999999999999999999999999987542210000000011234455555555555555544443
Q ss_pred cccccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEE
Q psy1713 233 LDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRF 312 (397)
Q Consensus 233 ~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~ 312 (397)
. ..
T Consensus 151 ------------------------------------------------------------------------~-----~~ 153 (269)
T PF00443_consen 151 ------------------------------------------------------------------------S-----QS 153 (269)
T ss_dssp ------------------------------------------------------------------------E-----EE
T ss_pred ------------------------------------------------------------------------c-----cc
Confidence 2 66
Q ss_pred EeeeCCceEEEEEeecccC-----CCCCCcccccC-CceeccCcccccCC--CCCcceEEEEEEEeecCCCCCCceEEEE
Q psy1713 313 SVDKPPNVLRLQLKRFNYH-----GLKNSRSVQVP-LHLEFGKFMHCRMS--HSQLKYKLVSAVIHHGSSPDSGHYTCIG 384 (397)
Q Consensus 313 ~i~~lP~iL~i~l~Rf~~~-----~~K~~~~v~fp-~~Ldl~~~~~~~~~--~~~~~Y~L~avv~H~G~~~~~GHY~~~v 384 (397)
.|.++|++|+|+|+||.|+ ..|+...|.|| +.|||.+++..+.. .....|+|+|||+|.| +.++|||+|||
T Consensus 154 ~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v 232 (269)
T PF00443_consen 154 SISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG-SADSGHYVAYV 232 (269)
T ss_dssp EEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES-STTSEEEEEEE
T ss_pred ccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhcccc-ccccceEEEee
Confidence 7889999999999999553 36999999999 79999998877543 2468999999999999 59999999999
Q ss_pred ecCC-CCeEEecCC
Q psy1713 385 STSS-GSYHYFDDE 397 (397)
Q Consensus 385 r~~~-~~W~~fdDs 397 (397)
|+.+ ++|++|||+
T Consensus 233 ~~~~~~~W~~~dD~ 246 (269)
T PF00443_consen 233 RDSDDGKWYKFDDS 246 (269)
T ss_dssp EETTTTEEEEEETT
T ss_pred ccccCCeEEEeeCC
Confidence 8854 469999996
No 26
>KOG1873|consensus
Probab=100.00 E-value=1.4e-41 Score=326.34 Aligned_cols=123 Identities=32% Similarity=0.523 Sum_probs=105.0
Q ss_pred CCCCHHHHHHhcccceeeCCCCceecCCCCCc---------------------------ceeEEEEEeeeCCceEEEEEe
Q psy1713 274 QSSSLDEALGHFFAKEYLGGDNLYRCEKCGRK---------------------------VEATKRFSVDKPPNVLRLQLK 326 (397)
Q Consensus 274 ~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~---------------------------~~~~k~~~i~~lP~iL~i~l~ 326 (397)
.++++++||.+|++.|.+.|+|+|.|+.|-+. +.+.|+..|..+|+||+|||+
T Consensus 676 ~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlK 755 (877)
T KOG1873|consen 676 EPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLK 755 (877)
T ss_pred CCccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHh
Confidence 36799999999999999999999999999651 125788889999999999999
Q ss_pred eccc----CCCCCCcccccCCceeccCcccccCC----CCCcceEEEEEEEeecCCCCCCceEEEEec------------
Q psy1713 327 RFNY----HGLKNSRSVQVPLHLEFGKFMHCRMS----HSQLKYKLVSAVIHHGSSPDSGHYTCIGST------------ 386 (397)
Q Consensus 327 Rf~~----~~~K~~~~v~fp~~Ldl~~~~~~~~~----~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~------------ 386 (397)
||.- ...|.+.+|.|++.+||.+|+..... .....|+|+|||.|.|+ +..|||++|+|.
T Consensus 756 rf~q~~~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgt-m~~ghyvayv~~~t~~~~~~~~~~ 834 (877)
T KOG1873|consen 756 RFFQDIRGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGT-MSYGHYVAYVRGGTFLDLSAPSNS 834 (877)
T ss_pred hhhhhhhchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceecccc-ccCCcchhhhhccchhhccCcccc
Confidence 9943 24699999999999999998875432 24568999999999998 999999999982
Q ss_pred ---------CCCCeEEecCC
Q psy1713 387 ---------SSGSYHYFDDE 397 (397)
Q Consensus 387 ---------~~~~W~~fdDs 397 (397)
+.|+||+..|+
T Consensus 835 ~~~~sd~~~~~~~Wy~iSDs 854 (877)
T KOG1873|consen 835 KDFESDAGIPSGRWYYISDS 854 (877)
T ss_pred ccchhccCCCCcceEEecch
Confidence 35799999885
No 27
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-39 Score=296.02 Aligned_cols=213 Identities=39% Similarity=0.652 Sum_probs=179.8
Q ss_pred CcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHHHHHHHH
Q psy1713 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLI 156 (397)
Q Consensus 77 GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~~~l~~~ 156 (397)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred hccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccccccccccccccc
Q psy1713 157 ARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSA 236 (397)
Q Consensus 157 ~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~~~~~ 236 (397)
.||||+|||..+|+.|+.++...... ........+.+.++|.|.+...+.|..|+..+..
T Consensus 21 -------~q~Da~E~l~~ll~~l~~~~~~~~~~---~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~---------- 80 (255)
T cd02257 21 -------EQQDAHEFLLFLLDKLHEELKKSSKR---TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVS---------- 80 (255)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhhccc---ccccccCCchhhhhcccEEeeEEECCCCCCCccC----------
Confidence 89999999999999999998653321 0111224578999999999999999999877666
Q ss_pred cCCCCccccccccccccccccCCCCCccceeeeecCCC----CCCHHHHHHhcccceeeCCCCceecCCCC--CcceeEE
Q psy1713 237 SKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQ----SSSLDEALGHFFAKEYLGGDNLYRCEKCG--RKVEATK 310 (397)
Q Consensus 237 ~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~----~~sL~~~L~~~~~~E~l~~~~~~~C~~C~--~~~~~~k 310 (397)
...+ ..+.++++. ..+|+++|+.++..|.+++ ..|..|+ +.+.+.+
T Consensus 81 -------~~~~------------------~~l~l~~~~~~~~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~ 132 (255)
T cd02257 81 -------TEPE------------------LFLSLPLPVKGLPQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATK 132 (255)
T ss_pred -------cccc------------------eeEEeeccCCCCCCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeE
Confidence 5555 555555553 5899999999999999987 7888888 6888999
Q ss_pred EEEeeeCCceEEEEEeeccc----CCCCCCcccccCCceeccCcccc-----cCCCCCcceEEEEEEEeecCCCCCCceE
Q psy1713 311 RFSVDKPPNVLRLQLKRFNY----HGLKNSRSVQVPLHLEFGKFMHC-----RMSHSQLKYKLVSAVIHHGSSPDSGHYT 381 (397)
Q Consensus 311 ~~~i~~lP~iL~i~l~Rf~~----~~~K~~~~v~fp~~Ldl~~~~~~-----~~~~~~~~Y~L~avv~H~G~~~~~GHY~ 381 (397)
+..|.++|++|+|+++||.+ ...|+...|.||++|++..++.. ........|+|+|||+|.|....+|||+
T Consensus 133 ~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~ 212 (255)
T cd02257 133 RLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYV 212 (255)
T ss_pred EEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeE
Confidence 99999999999999999975 46799999999999999988752 2234478999999999999866999999
Q ss_pred EEEecCC-CCeEEecCC
Q psy1713 382 CIGSTSS-GSYHYFDDE 397 (397)
Q Consensus 382 ~~vr~~~-~~W~~fdDs 397 (397)
||+|.++ ++||+|||+
T Consensus 213 ~~~~~~~~~~W~~~nD~ 229 (255)
T cd02257 213 AYVKDPSDGKWYKFNDD 229 (255)
T ss_pred EEEeCCCCCceEEEecc
Confidence 9999965 999999995
No 28
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-40 Score=302.03 Aligned_cols=224 Identities=24% Similarity=0.431 Sum_probs=183.6
Q ss_pred CCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccc-cccccCCCcchhHHHHHHHHHHHHHhcCC----CccChHHH
Q psy1713 75 GAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQT-LCEKQSGYQFECLVCAMRKTLAHCQAKSG----SAIRPELI 149 (397)
Q Consensus 75 ~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~l~~~~~~~~~----~~~~p~~~ 149 (397)
.+||.|+||+||+|||+|.|+..-.+..-+........ .+. .+..++.|++.+++..+..... ..++|..|
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~----~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~f 378 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMK----NPLECLFCQLMKLLSKMKETPDNEYVNGISPLDF 378 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeec----CCchhHHHHHHHHHhhccCCCCccccCCcChhhH
Confidence 69999999999999999999998776665543332221 122 1236799999999998887653 68999999
Q ss_pred HHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCcccccccc
Q psy1713 150 IKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLF 229 (397)
Q Consensus 150 ~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~ 229 (397)
+..++.-++.|..++||||+|||.+||+.|.+..... ..++|..+|...+..++.|..|+.++..
T Consensus 379 k~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~------------~~~~It~lf~Fe~e~rlsC~~C~~v~yS--- 443 (749)
T COG5207 379 KMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSY------------LIPPITSLFEFEVERRLSCSGCMDVSYS--- 443 (749)
T ss_pred HHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccchh------------cCCCcchhhhhhhcceeccccccccccc---
Confidence 9999999999999999999999999999998753221 2467889999999999999999999998
Q ss_pred ccccccccCCCCccccccccccccccccCCCCCccceeeeecCC---CCCCHHHHHHhcccceeeCCCCceecCCCCCcc
Q psy1713 230 HSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIR---QSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKV 306 (397)
Q Consensus 230 ~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~---~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~ 306 (397)
+++. ..+.+... .+.++.++++.||.+++++ |.|++|+.+.
T Consensus 444 --------------ye~~------------------~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~ 487 (749)
T COG5207 444 --------------YESM------------------LMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKK 487 (749)
T ss_pred --------------ccce------------------EEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCcc
Confidence 8887 66665544 4578999999999999999 9999999999
Q ss_pred eeEEEEEeeeCCceEEEEEeecccCC---CCCCcccccCC--ceeccCcccc
Q psy1713 307 EATKRFSVDKPPNVLRLQLKRFNYHG---LKNSRSVQVPL--HLEFGKFMHC 353 (397)
Q Consensus 307 ~~~k~~~i~~lP~iL~i~l~Rf~~~~---~K~~~~v~fp~--~Ldl~~~~~~ 353 (397)
.|.++..|.++|++||++..||.+++ .|+...+.+.. .++++.|+..
T Consensus 488 ~a~~k~~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk 539 (749)
T COG5207 488 KASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSK 539 (749)
T ss_pred cccccchhhccCceeEEecceeeccceeehhccCceEEccccccchhhHhhc
Confidence 99999999999999999999996554 55555555543 4777776654
No 29
>KOG1870|consensus
Probab=100.00 E-value=1.1e-39 Score=337.57 Aligned_cols=324 Identities=24% Similarity=0.406 Sum_probs=242.5
Q ss_pred CCCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHH
Q psy1713 70 GRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELI 149 (397)
Q Consensus 70 ~~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~ 149 (397)
...++.+||.|+|||||||+.+|+|.+.++++++++...+..+............+...+..++..+|......++|..+
T Consensus 241 ~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~ 320 (842)
T KOG1870|consen 241 PSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTSF 320 (842)
T ss_pred CCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchhh
Confidence 34567899999999999999999999999999999887666533333333334457778888888888877678999999
Q ss_pred HHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCC--CCC----------------CCCCCCCCccccccCeee
Q psy1713 150 IKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSS--NKL----------------DSASKETTPIYQLFGTYL 211 (397)
Q Consensus 150 ~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~--~~~----------------~~~~~~~~~i~~~F~g~~ 211 (397)
...+....+.|.++.|+|.+||+.+|+|.||+.+....... ... .......+.+.++|.|..
T Consensus 321 ~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~ 400 (842)
T KOG1870|consen 321 RTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTY 400 (842)
T ss_pred hhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeeccee
Confidence 99999999999999999999999999999999987765441 000 012345678999999999
Q ss_pred cceEEeCCCCcccccccccccccccc-----------------------------CC-----------------------
Q psy1713 212 RTEVTCNSCSHISTQCLFHSRLDSAS-----------------------------KE----------------------- 239 (397)
Q Consensus 212 ~~~~~C~~C~~~s~~~~~~~~~~~~~-----------------------------~~----------------------- 239 (397)
.+.+.|..|++++.+......+.-+. +.
T Consensus 401 ~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~ 480 (842)
T KOG1870|consen 401 KSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSWELKP 480 (842)
T ss_pred cccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchhhccc
Confidence 99999999999988721111110000 00
Q ss_pred -------------CC-----ccc--c-c--cccc----------cc-----------------------------cccc-
Q psy1713 240 -------------TT-----PIY--Q-L--FGTY----------LR-----------------------------TEVT- 256 (397)
Q Consensus 240 -------------~~-----~~~--e-~--f~~~----------~~-----------------------------~~~~- 256 (397)
.. .+. + . |... ++ ....
T Consensus 481 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~ 560 (842)
T KOG1870|consen 481 VEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSG 560 (842)
T ss_pred ceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccCC
Confidence 00 000 0 0 0000 00 0000
Q ss_pred cC----------------CCCC--------ccceeeee---------------------------------cCC------
Q psy1713 257 CN----------------SCSH--------ISNLELSL---------------------------------DIR------ 273 (397)
Q Consensus 257 c~----------------~c~~--------~~~~~l~l---------------------------------~i~------ 273 (397)
+. .+.. .....+.. +..
T Consensus 561 ~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (842)
T KOG1870|consen 561 AQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQS 640 (842)
T ss_pred CcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCccccccccc
Confidence 00 0000 00000000 000
Q ss_pred -----------------------------------------------------CCCCHHHHHHhcccceeeCCCCceecC
Q psy1713 274 -----------------------------------------------------QSSSLDEALGHFFAKEYLGGDNLYRCE 300 (397)
Q Consensus 274 -----------------------------------------------------~~~sL~~~L~~~~~~E~l~~~~~~~C~ 300 (397)
...+|++||+.|+.+|.|..+++|.|+
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~ 720 (842)
T KOG1870|consen 641 LESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYCP 720 (842)
T ss_pred ccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccCh
Confidence 356899999999999999999999999
Q ss_pred CCCCcceeEEEEEeeeCCceEEEEEeecccCC---CCCCcccccCC-ceeccCcccccCCCCCcceEEEEEEEeecCCCC
Q psy1713 301 KCGRKVEATKRFSVDKPPNVLRLQLKRFNYHG---LKNSRSVQVPL-HLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPD 376 (397)
Q Consensus 301 ~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~~---~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~ 376 (397)
.|++...|.|+..++++|++||||||||.|.+ .|+.+.|+||. .||+++|+..... ..|+|+||++|+|. +.
T Consensus 721 ~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~---~~Y~l~av~nHyG~-l~ 796 (842)
T KOG1870|consen 721 QCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ---VLYDLYAVGNHYGQ-LS 796 (842)
T ss_pred HHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc---ceeeeeeeecccCC-cC
Confidence 99999999999999999999999999997754 79999999998 6999999988643 89999999999998 99
Q ss_pred CCceEEEEec-CCCCeEEecCC
Q psy1713 377 SGHYTCIGST-SSGSYHYFDDE 397 (397)
Q Consensus 377 ~GHY~~~vr~-~~~~W~~fdDs 397 (397)
+|||+||.|. .+++||.|||+
T Consensus 797 ~GHYta~~k~~~~~~w~~fdDs 818 (842)
T KOG1870|consen 797 GGHYTAYAKNVGDGKWYLFDDS 818 (842)
T ss_pred CcchhhhhhcCCCCceEEeccc
Confidence 9999999999 59999999996
No 30
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=2.4e-37 Score=288.03 Aligned_cols=274 Identities=28% Similarity=0.451 Sum_probs=232.9
Q ss_pred CCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHH-hcCCCccChHHHHHHHH
Q psy1713 76 AGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQ-AKSGSAIRPELIIKKLK 154 (397)
Q Consensus 76 ~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~~~p~~~~~~l~ 154 (397)
.||.|.+++||+||+||+|+++|++++.++... . |.+ ..|++|+|+-+|.+|. ...+..+.+..|+++++
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~---c~~-----e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~ 71 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E---CPK-----EFCLLCELGFLFDMLDSKAKGINCQASNFLRALS 71 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C---CCc-----cccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHh
Confidence 599999999999999999999999999999876 1 221 2789999999999998 77789999999999999
Q ss_pred HHhccccccccccHHHHHHHHHHHHHHHHHhcCCCC--CCCCCCCCCCCccccccCeeecceEEeCCCCccccccccccc
Q psy1713 155 LIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSS--NKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSR 232 (397)
Q Consensus 155 ~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~--~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~ 232 (397)
........+.|+|.++|++||+++|+.++....... ............|.++|+.......+|..|+..+..
T Consensus 72 ~~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~------ 145 (295)
T PF13423_consen 72 WIPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVK------ 145 (295)
T ss_pred cCHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEe------
Confidence 886656677899999999999999999987765421 111122345678999999999999999999999887
Q ss_pred cccccCCCCccccccccccccccccCCCCCccceeeeecCCC---CCCHHHHHHhcccceeeCCCCceecCCCCCcceeE
Q psy1713 233 LDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQ---SSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEAT 309 (397)
Q Consensus 233 ~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~---~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~ 309 (397)
.+.. +.+.+..+. ..++.++|+..+..|.... ..|++|++.+...
T Consensus 146 -----------~~~~------------------~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~ 193 (295)
T PF13423_consen 146 -----------ESST------------------LVLDLPYPPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTE 193 (295)
T ss_pred -----------ecce------------------eeeeccCCCCCccchHHHHHHHHHhhccccc---cccccccccccee
Confidence 6666 666665554 5799999999999998875 8999999999999
Q ss_pred EEEEeeeCCceEEEEEeecccC---CCCCCcccccCCceeccCcccccC------CCCCcceEEEEEEEeecCCCCCCce
Q psy1713 310 KRFSVDKPPNVLRLQLKRFNYH---GLKNSRSVQVPLHLEFGKFMHCRM------SHSQLKYKLVSAVIHHGSSPDSGHY 380 (397)
Q Consensus 310 k~~~i~~lP~iL~i~l~Rf~~~---~~K~~~~v~fp~~Ldl~~~~~~~~------~~~~~~Y~L~avv~H~G~~~~~GHY 380 (397)
.+..|.++|+||.|.++|.... ..|....+.+|..+++..++..+. .....+|+|.|+|+|.|++..+|||
T Consensus 194 ~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~Hl 273 (295)
T PF13423_consen 194 QRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHL 273 (295)
T ss_pred eeeeccCCCcEEEEEccCCCcccccccccCCceecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCce
Confidence 9999999999999999999543 568888999999999998875532 4567899999999999998999999
Q ss_pred EEEEecC---CCCeEEecC
Q psy1713 381 TCIGSTS---SGSYHYFDD 396 (397)
Q Consensus 381 ~~~vr~~---~~~W~~fdD 396 (397)
|+|||.+ +++||.|||
T Consensus 274 Vs~vrv~~~~~~~W~lFND 292 (295)
T PF13423_consen 274 VSLVRVGPSDDSQWYLFND 292 (295)
T ss_pred EEEEEcCCCCCCcEEEECc
Confidence 9999985 469999999
No 31
>KOG1863|consensus
Probab=100.00 E-value=7.2e-39 Score=339.17 Aligned_cols=278 Identities=26% Similarity=0.397 Sum_probs=239.7
Q ss_pred cCCCCCCCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCcc
Q psy1713 65 TLGWQGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAI 144 (397)
Q Consensus 65 ~~~~~~~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 144 (397)
...|++....++||.|+||||||||+||.|+.++.||+.+........... +...+..+|+.+|..++......+
T Consensus 160 ~~d~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~-----~~~~v~~~lq~lF~~LQ~s~~k~V 234 (1093)
T KOG1863|consen 160 PYDSKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHED-----PRRSIPLALQRLFYELQMSKRKYV 234 (1093)
T ss_pred hhhhhhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCccc-----ccchHHHHHHHHHHHHhhcCCCCc
Confidence 344555566679999999999999999999999999999998874221111 113388899999999998888899
Q ss_pred ChHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccc
Q psy1713 145 RPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHIS 224 (397)
Q Consensus 145 ~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s 224 (397)
++..+...+++.. ...++|||++||+..|+|.|++.+.... ....+.++|.|.+.+.+.|..|...+
T Consensus 235 dt~~~~~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~-----------~~~~l~~lf~g~~~~~i~c~~~~~~s 301 (1093)
T KOG1863|consen 235 DTSELTKSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAK-----------VENTLQDLFTGKMKSVIKCIDVDFES 301 (1093)
T ss_pred Cchhhhhhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchh-----------hhhhhhhhhcCCcceEEEEEeeeeec
Confidence 9999999998654 4568999999999999999999864332 24578899999999999999999999
Q ss_pred cccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhcccceeeCCCCceecCCCCC
Q psy1713 225 TQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGR 304 (397)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~ 304 (397)
.. .+.| +++.+.+.+..+|.++|+.|+..|.++|+++ .|..|..
T Consensus 302 ~r-----------------~e~f------------------~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~ 345 (1093)
T KOG1863|consen 302 SR-----------------SESF------------------LDLQLNGKGVKNLEDSLHLYFEAEILLGDNK-YDAECHG 345 (1093)
T ss_pred cc-----------------cccc------------------cCccccccchhhHHHHHHHhhhHHHhcCCcc-ccccccc
Confidence 88 9999 9999999999999999999999999999998 8999999
Q ss_pred cceeEEEEEeeeCCceEEEEEeecccC-----CCCCCcccccCCceeccCcccc--cC-CCCCcceEEEEEEEeecCCCC
Q psy1713 305 KVEATKRFSVDKPPNVLRLQLKRFNYH-----GLKNSRSVQVPLHLEFGKFMHC--RM-SHSQLKYKLVSAVIHHGSSPD 376 (397)
Q Consensus 305 ~~~~~k~~~i~~lP~iL~i~l~Rf~~~-----~~K~~~~v~fp~~Ldl~~~~~~--~~-~~~~~~Y~L~avv~H~G~~~~ 376 (397)
.+.+.+...+.+||++|.|+|+||.|+ ..|+...+.||..|+|.+|+.. .. ....+.|+|.||.+|.|. ..
T Consensus 346 ~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~-~~ 424 (1093)
T KOG1863|consen 346 LQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGD-AH 424 (1093)
T ss_pred hhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhccccchhhhhccceeccchhhccccc-cc
Confidence 999999999999999999999999884 3699999999999999999874 11 122359999999999776 99
Q ss_pred CCceEEEEecC-CCCeEEecCC
Q psy1713 377 SGHYTCIGSTS-SGSYHYFDDE 397 (397)
Q Consensus 377 ~GHY~~~vr~~-~~~W~~fdDs 397 (397)
+|||++|++.+ .++|++|||.
T Consensus 425 ~ghy~~~i~~~~~~~w~kfdd~ 446 (1093)
T KOG1863|consen 425 SGHYVAYINPKLDGKWVKFDDL 446 (1093)
T ss_pred CccceeeecchhhccceeccCc
Confidence 99999999964 8999999995
No 32
>KOG4598|consensus
Probab=100.00 E-value=5.9e-39 Score=305.13 Aligned_cols=244 Identities=23% Similarity=0.391 Sum_probs=205.6
Q ss_pred CCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHHHH
Q psy1713 73 PAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKK 152 (397)
Q Consensus 73 ~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~~~ 152 (397)
.+.+||.|..-+||+|+.+|+|+..|.|++.+..... .++....+.+.
T Consensus 85 ~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~~--------------------------------~~~et~dlt~s 132 (1203)
T KOG4598|consen 85 HRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSEN--------------------------------DSLETKDLTQS 132 (1203)
T ss_pred cceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCCc--------------------------------ccccchhhHhh
Confidence 4569999999999999999999999999998863221 12222223333
Q ss_pred HHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccccccccccc
Q psy1713 153 LKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSR 232 (397)
Q Consensus 153 l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~ 232 (397)
+++ ..-..++|+|.+|+.+.++|+|+-..... +....|.+++.|.+...+.|..|+.++++
T Consensus 133 fgw--~s~ea~~qhdiqelcr~mfdalehk~k~t-----------~~~~li~~ly~g~m~d~v~cl~c~~e~~~------ 193 (1203)
T KOG4598|consen 133 FGW--TSNEAYDQHDVQELCRLMFDALEHKWKGT-----------EHEKLIQDLYRGTMEDFVACLKCGRESVK------ 193 (1203)
T ss_pred cCC--CcchhhhhhhHHHHHHHHHHHHHhhhcCc-----------hHHHHHHHHhcchHHHHHHHHHcCccccc------
Confidence 332 12246899999999999999998765332 23467899999999999999999999999
Q ss_pred cccccCCCCccccccccccccccccCCCCCccceeeeecCCCC------CCHHHHHHhcccceeeCCCCceecCCCCCcc
Q psy1713 233 LDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS------SSLDEALGHFFAKEYLGGDNLYRCEKCGRKV 306 (397)
Q Consensus 233 ~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~------~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~ 306 (397)
.+.| ++|+|++.+- .+++++|+.|..+|.++|.|+|.|++|++++
T Consensus 194 -----------~d~f------------------ld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~ 244 (1203)
T KOG4598|consen 194 -----------TDYF------------------LDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQ 244 (1203)
T ss_pred -----------ccee------------------ecccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhh
Confidence 9999 9999998753 5899999999999999999999999999999
Q ss_pred eeEEEEEeeeCCceEEEEEeecccC-----CCCCCcccccCCceeccCcccccC--------------------------
Q psy1713 307 EATKRFSVDKPPNVLRLQLKRFNYH-----GLKNSRSVQVPLHLEFGKFMHCRM-------------------------- 355 (397)
Q Consensus 307 ~~~k~~~i~~lP~iL~i~l~Rf~~~-----~~K~~~~v~fp~~Ldl~~~~~~~~-------------------------- 355 (397)
.|.|.+.|..+|-+|.||||||+|+ +.|++++|.||..|||..|.....
T Consensus 245 dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 324 (1203)
T KOG4598|consen 245 DAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELG 324 (1203)
T ss_pred hhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccC
Confidence 9999999999999999999999764 479999999999999988875432
Q ss_pred ---------------------------------------CCCCcceEEEEEEEeecCCCCCCceEEEEec-CCCCeEEec
Q psy1713 356 ---------------------------------------SHSQLKYKLVSAVIHHGSSPDSGHYTCIGST-SSGSYHYFD 395 (397)
Q Consensus 356 ---------------------------------------~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~-~~~~W~~fd 395 (397)
+.++..|+|+||.+|.|. +.+|||+||+|+ .+++||+||
T Consensus 325 ~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~-a~gghy~ayik~~d~~~w~~fn 403 (1203)
T KOG4598|consen 325 SPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGN-AAGGHYFAYIKNLDQDRWYVFN 403 (1203)
T ss_pred CCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCC-CCCceeeeeecccCcCceEEec
Confidence 135678999999999997 999999999998 588999999
Q ss_pred CC
Q psy1713 396 DE 397 (397)
Q Consensus 396 Ds 397 (397)
|.
T Consensus 404 d~ 405 (1203)
T KOG4598|consen 404 DT 405 (1203)
T ss_pred Cc
Confidence 94
No 33
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.1e-37 Score=279.88 Aligned_cols=216 Identities=25% Similarity=0.308 Sum_probs=173.2
Q ss_pred CCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHHHHH
Q psy1713 74 AGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKL 153 (397)
Q Consensus 74 ~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~~~l 153 (397)
..+||.|.|.|||+||+||+|+++|+||+++. .... .+. ...|++|+|..||. .+
T Consensus 14 ~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~-~~~~--~~~-----~~~~l~~el~~lfs-------------~~---- 68 (268)
T cd02672 14 NYAGLENHITNSYCNSLLQLLYFIPPFRNFTA-IILV--ACP-----KESCLLCELGYLFS-------------TL---- 68 (268)
T ss_pred cccccccCCccchHHHHHHHHHhcHHHHHHHH-hhcc--cCC-----cCccHHHHHHHHHH-------------HH----
Confidence 37999999999999999999999999999832 2111 122 12789999999991 01
Q ss_pred HHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCcccccccccccc
Q psy1713 154 KLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRL 233 (397)
Q Consensus 154 ~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~~ 233 (397)
.+-|-.+|++.+..+.... + ..|++++.+
T Consensus 69 --------------iq~F~~fll~~i~~~~~~~--------------------~----------~~C~~~s~~------- 97 (268)
T cd02672 69 --------------IQNFTRFLLETISQDQLGT--------------------P----------FSCGTSRNS------- 97 (268)
T ss_pred --------------HHHHHHHHHHHHHHHhccc--------------------C----------CCCCceeec-------
Confidence 2446678888888663210 0 579999999
Q ss_pred ccccCCCCccccccccccccccccCCCCCccceeeeecCCC-----CCCHHHHHHhcccceeeCCCCceecCCCCCccee
Q psy1713 234 DSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQ-----SSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEA 308 (397)
Q Consensus 234 ~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~-----~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~ 308 (397)
.++| +.|+|+++. ..+|++||+.++..|... ++.|++|++.+.+
T Consensus 98 ----------~~~~------------------~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~~---~~~C~~C~~~~~a 146 (268)
T cd02672 98 ----------VSLL------------------YTLSLPLGSTKTSKESTFLQLLKRSLDLEKVT---KAWCDTCCKYQPL 146 (268)
T ss_pred ----------cccc------------------eeeeeecCccccccCCCHHHHHHHHhhhhhcc---cccccccCccccc
Confidence 9999 999999984 469999999999998654 4899999999999
Q ss_pred EEEEEeeeCCc----eEEEEEeecccCC----------CCCCcccccCCceeccCcccccCCCCCcceEEEEEEEeecCC
Q psy1713 309 TKRFSVDKPPN----VLRLQLKRFNYHG----------LKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSS 374 (397)
Q Consensus 309 ~k~~~i~~lP~----iL~i~l~Rf~~~~----------~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~ 374 (397)
.|+..|.++|+ ||+|||+||.+.. .|+...|.||..+++....... ......|+|+|||+|.|.+
T Consensus 147 ~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~-~~~~~~Y~L~gvV~hig~~ 225 (268)
T cd02672 147 EQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNRG-QESIYKYELVGYVCEINDS 225 (268)
T ss_pred EEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhccC-CCCCceEEEEEEEEEecCC
Confidence 99999999999 9999999997432 4677899999887776554333 2345789999999999986
Q ss_pred CCCCceEEEEecC-----CCCeEEecCC
Q psy1713 375 PDSGHYTCIGSTS-----SGSYHYFDDE 397 (397)
Q Consensus 375 ~~~GHY~~~vr~~-----~~~W~~fdDs 397 (397)
..+|||+||||.. .++||.|||.
T Consensus 226 ~~~GHyva~vk~~~~~~~~~~WylFND~ 253 (268)
T cd02672 226 SRGQHNVVFVIKVNEESTHGRWYLFNDF 253 (268)
T ss_pred CCCCcEEEEEEccCCCCCCCcEEEecCe
Confidence 6899999999985 5799999995
No 34
>KOG1864|consensus
Probab=100.00 E-value=3.7e-33 Score=274.51 Aligned_cols=284 Identities=30% Similarity=0.450 Sum_probs=223.7
Q ss_pred CCCCcccCCCcchHH--HHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhc--CCCccChHHH
Q psy1713 74 AGAGLVNAINTCYLN--SCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAK--SGSAIRPELI 149 (397)
Q Consensus 74 ~~~GL~N~GNtCy~N--SvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~~~~~~p~~~ 149 (397)
..-|..|.+++|+.| ++.|.+..+..+++......... +........++..+..++...... ....+.|..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~ 306 (587)
T KOG1864|consen 231 RVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSL----KRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRF 306 (587)
T ss_pred cccCccccCccccccchhhHHHHHhhhhhcccccchhhcc----cchhhhhHHHHHHhhhhccchhhhcccccccCcchh
Confidence 346899999999999 99999999988885444332211 111111122333333333322211 1267899999
Q ss_pred HHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCC-----------CCCCC----------CCCCCCccccccC
Q psy1713 150 IKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSS-----------NKLDS----------ASKETTPIYQLFG 208 (397)
Q Consensus 150 ~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~-----------~~~~~----------~~~~~~~i~~~F~ 208 (397)
+..+.+....|..+.|||||||+.++++.+++-+....... ..... .......+..+|.
T Consensus 307 ~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~ 386 (587)
T KOG1864|consen 307 ISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQ 386 (587)
T ss_pred hhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhc
Confidence 99999999999999999999999999999988765533111 00001 1124567889999
Q ss_pred eeecceEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCC--CCCCHHHHHHhcc
Q psy1713 209 TYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIR--QSSSLDEALGHFF 286 (397)
Q Consensus 209 g~~~~~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~--~~~sL~~~L~~~~ 286 (397)
|++..+..|..|+..+.. .+.| .++++++. ...++..+|+.|.
T Consensus 387 g~l~~et~Clsc~t~T~~-----------------de~f------------------~D~~~~v~~de~~si~~~l~~~~ 431 (587)
T KOG1864|consen 387 GILTNETRCLSCETITSR-----------------DEGF------------------LDLSVAVEIDENTSITNLLKSFS 431 (587)
T ss_pred Ceeeeeeeeccccccccc-----------------cccc------------------cccceeccccccccHHHHHHHhc
Confidence 999999999999999998 9999 88888887 6899999999999
Q ss_pred cceeeCCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeecccCC-----CCCCcccccCCceeccCcccccCCCCCcc
Q psy1713 287 AKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHG-----LKNSRSVQVPLHLEFGKFMHCRMSHSQLK 361 (397)
Q Consensus 287 ~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~~-----~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~ 361 (397)
.+|.+.|+++|.|++|...+.|.+++.+.++|.+|+|||+||.+.. .|+...|.+|.+|.+.......... ...
T Consensus 432 ~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~~~-~~~ 510 (587)
T KOG1864|consen 432 STETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDNNP-DRK 510 (587)
T ss_pred chhhccCCCcccccccCchhhHHHhccccCCcceeeeehhccccccccccccccccccccccceeeccccccccCc-cce
Confidence 9999999999999999999999999999999999999999997752 5888899999999888665554221 368
Q ss_pred eEEEEEEEeecCCCCCCceEEEEecCCCCeEEecCC
Q psy1713 362 YKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397 (397)
Q Consensus 362 Y~L~avv~H~G~~~~~GHY~~~vr~~~~~W~~fdDs 397 (397)
|.|+|||+|.|.+.+.|||+||+|..+-.|+.|||+
T Consensus 511 Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~fdD~ 546 (587)
T KOG1864|consen 511 YDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLFDDD 546 (587)
T ss_pred eeEEEEEEeccCCCCCcceEEEEeeCCCCceecccc
Confidence 999999999999999999999999955459999996
No 35
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.6e-33 Score=246.66 Aligned_cols=154 Identities=22% Similarity=0.406 Sum_probs=119.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccccccccccccccccCCCCcc
Q psy1713 164 RQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPI 243 (397)
Q Consensus 164 ~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~ 243 (397)
+|||+.||+.+|+++++..+.. +.-++|.|-....-. . +..
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~~----------------~~~~~~~~g~~~~~~---~---~~~----------------- 62 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLLE----------------PKVDIIHGGKKDQDD---D---KLV----------------- 62 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhhh----------------HHHHHHhcCcccccc---c---ccc-----------------
Confidence 7999999999999999876532 234555442111100 0 111
Q ss_pred ccccccccccccccCCCCCccceeeeecCC---CCCCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEEEeeeCCce
Q psy1713 244 YQLFGTYLRTEVTCNSCSHISNLELSLDIR---QSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNV 320 (397)
Q Consensus 244 ~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~---~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~i 320 (397)
.|.| +.|+++.. ...+|++||+.|++.|. |.++|++
T Consensus 63 ~e~~------------------l~l~ip~~~~~~~~tLedcLe~~~~~e~-----------------------i~~lP~v 101 (241)
T cd02670 63 NERL------------------LQIPVPDDDDGGGITLEQCLEQYFNNSV-----------------------FAKAPSC 101 (241)
T ss_pred ccce------------------EEeecccCCCCCcCCHHHHHHHHhchhh-----------------------hhhCCCe
Confidence 5666 66666654 35799999999999885 7799999
Q ss_pred EEEEEeecccC---CCCCCcccccCCceeccCcccccC---------------------CCCCcceEEEEEEEeecCCCC
Q psy1713 321 LRLQLKRFNYH---GLKNSRSVQVPLHLEFGKFMHCRM---------------------SHSQLKYKLVSAVIHHGSSPD 376 (397)
Q Consensus 321 L~i~l~Rf~~~---~~K~~~~v~fp~~Ldl~~~~~~~~---------------------~~~~~~Y~L~avv~H~G~~~~ 376 (397)
|+||||||.++ ..|+.+.|.||..|||.+|+.... .....+|+|+|||+|.|.+..
T Consensus 102 LiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~ 181 (241)
T cd02670 102 LIICLKRYGKTEGKAQKMFKKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLE 181 (241)
T ss_pred EEEEEEccccCCCcceeCCcEECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCC
Confidence 99999999875 379999999999999999986531 123468999999999998789
Q ss_pred CCceEEEEecCC------------CCeEEecCC
Q psy1713 377 SGHYTCIGSTSS------------GSYHYFDDE 397 (397)
Q Consensus 377 ~GHY~~~vr~~~------------~~W~~fdDs 397 (397)
+|||+||||... ++|++|||.
T Consensus 182 sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~ 214 (241)
T cd02670 182 TGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDM 214 (241)
T ss_pred CcCeEEEEECCcccccccccCCCCCeEEEecCc
Confidence 999999999864 799999994
No 36
>KOG1872|consensus
Probab=99.96 E-value=1.3e-30 Score=241.23 Aligned_cols=279 Identities=20% Similarity=0.229 Sum_probs=205.5
Q ss_pred CCCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHH
Q psy1713 70 GRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELI 149 (397)
Q Consensus 70 ~~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~ 149 (397)
...+.++||.|+|||||||+.+|+|-.+|++...+.......+... .......+..+|+.+|..+... ..+.|..+
T Consensus 100 ~~~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~--t~~~a~~i~~~mR~~f~~~~~~--~~v~pi~l 175 (473)
T KOG1872|consen 100 AALPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGD--TWERRRRISIETRTCFRPLCEK--GAVAPINL 175 (473)
T ss_pred hhccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCc--hhhhhhhHHHHHHHHHHhhhcc--CCcchHHH
Confidence 3457889999999999999999999999999988876653332111 0011244888999999988776 89999999
Q ss_pred HHHHHHHhccccc------cccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCcc
Q psy1713 150 IKKLKLIARHLEH------HRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHI 223 (397)
Q Consensus 150 ~~~l~~~~~~f~~------~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~ 223 (397)
++.+.+-.|+|.- +.||||.|++..++-.++..+....... .....+.+.|++.+..+..|..-...
T Consensus 176 lqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~-------~~~~~~d~~f~~~~~~t~~~~e~e~~ 248 (473)
T KOG1872|consen 176 LQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP-------CLEAEAAAGFGAEFSTTMSCSEGEDE 248 (473)
T ss_pred HHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc-------chhHHHHHhhccccccceeeccCccc
Confidence 9999999898865 8999999999999999998764433211 23456788899999999998765444
Q ss_pred ccccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCC-CCHHHHHHhcccceeeCCCCceecCCC
Q psy1713 224 STQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS-SSLDEALGHFFAKEYLGGDNLYRCEKC 302 (397)
Q Consensus 224 s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~-~sL~~~L~~~~~~E~l~~~~~~~C~~C 302 (397)
... ...|.| ..|..-|... ..+...|+.-++++ +. -.-+.-
T Consensus 249 ~~~---------------~~~E~~------------------~~L~c~i~~~~~~~k~Gl~~~~~e~-~~----K~s~~l 290 (473)
T KOG1872|consen 249 GGG---------------AGRELV------------------DQLKCIINKTVHDMRFGLKSGLSEE-IQ----KISSIL 290 (473)
T ss_pred ccc---------------cccccc------------------cccceEEeeeechhhhhhhhhhhhh-hh----ccCccc
Confidence 333 004555 5555544432 23334444333222 11 122233
Q ss_pred CCcceeEEEEEeeeCCceEEEEEeecccCC-----CCCCcccccCCceeccCcccccC----------------------
Q psy1713 303 GRKVEATKRFSVDKPPNVLRLQLKRFNYHG-----LKNSRSVQVPLHLEFGKFMHCRM---------------------- 355 (397)
Q Consensus 303 ~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~~-----~K~~~~v~fp~~Ldl~~~~~~~~---------------------- 355 (397)
|......|...|.++|.+|+|++.||.|.. .|+.+.|.||..||..+.+..+.
T Consensus 291 gr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~ 370 (473)
T KOG1872|consen 291 GRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEED 370 (473)
T ss_pred CCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchh
Confidence 444445778889999999999999998753 58888999999999988776542
Q ss_pred --------------------------CCC-CcceEEEEEEEeecCCCCCCceEEEEecCCCCeEEecCC
Q psy1713 356 --------------------------SHS-QLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397 (397)
Q Consensus 356 --------------------------~~~-~~~Y~L~avv~H~G~~~~~GHY~~~vr~~~~~W~~fdDs 397 (397)
+.. ...|+|+|||.|.|.+..+|||++|+|...+.|++|||+
T Consensus 371 ~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~ 439 (473)
T KOG1872|consen 371 VMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDD 439 (473)
T ss_pred hcccccCcCcccccccccchhccccccccccceeeeeEeeeccccccCCCcceEEEeccCCceeecccc
Confidence 012 457999999999999999999999999988899999995
No 37
>KOG1871|consensus
Probab=99.96 E-value=2e-29 Score=227.35 Aligned_cols=281 Identities=31% Similarity=0.423 Sum_probs=202.9
Q ss_pred CCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhc-------------
Q psy1713 73 PAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAK------------- 139 (397)
Q Consensus 73 ~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~------------- 139 (397)
..|+|+.|-||-|||||+||+|+.|++|.+.+....... .... .. ..+++.++..+..+.-..
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~-~~~~-~~--stp~lda~~~~~~df~n~~~~k~~r~N~~~~ 101 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRAD-GTVK-EG--STPLLDASRPASSDFNNDSDAKLPRKNSLRV 101 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhc-Ccee-cc--cchhHHHHHHHHhhccccchhhhhhhccCCc
Confidence 458999999999999999999999999999987655222 1111 11 123555555544432210
Q ss_pred ---------------CCCccChHHHHHHHHHH--hccccccccccHHHHHHHHHHHHHHHHHhcCCC-----CC------
Q psy1713 140 ---------------SGSAIRPELIIKKLKLI--ARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPS-----SN------ 191 (397)
Q Consensus 140 ---------------~~~~~~p~~~~~~l~~~--~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~-----~~------ 191 (397)
.+.++.|..+...+... ......|.|+||.|||.++||.||+|+.+.... .+
T Consensus 102 ~~~~~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~ 181 (420)
T KOG1871|consen 102 PEHVVEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGL 181 (420)
T ss_pred cccccchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccc
Confidence 11233333333333221 123346999999999999999999998653210 00
Q ss_pred -------CCC--------------------------CCCCCCCccccccCeeecceEEeCCCCccccccccccccccccC
Q psy1713 192 -------KLD--------------------------SASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASK 238 (397)
Q Consensus 192 -------~~~--------------------------~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~~~~~~~ 238 (397)
..+ ...-..+++.++|+|++++.+.-.. .+++.+
T Consensus 182 i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~t------------ 248 (420)
T KOG1871|consen 182 INNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESAT------------ 248 (420)
T ss_pred ccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccc------------
Confidence 000 0112356889999999998876433 344455
Q ss_pred CCCccccccccccccccccCCCCCccceeeeecC--CCCCCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEEEeee
Q psy1713 239 ETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDI--RQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDK 316 (397)
Q Consensus 239 ~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i--~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~ 316 (397)
.+|| ..|.|+| ....+++++|+.+...|.+.+ |.-. -+..+.+.+++.+.+
T Consensus 249 -----lqPF------------------~tlqldiq~~~i~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~lek 301 (420)
T KOG1871|consen 249 -----LQPF------------------FTLQLDIQSEKIHSVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEK 301 (420)
T ss_pred -----cCcc------------------ceeeeeeeccccCCHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhh
Confidence 8999 8899988 567899999999999999986 5555 677888999999999
Q ss_pred CCceEEEEEeecccC----CCCCCcccccCCceeccCcccc-----cCCCCCcceEEEEEEEeecCCCCCCceEEEEec-
Q psy1713 317 PPNVLRLQLKRFNYH----GLKNSRSVQVPLHLEFGKFMHC-----RMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGST- 386 (397)
Q Consensus 317 lP~iL~i~l~Rf~~~----~~K~~~~v~fp~~Ldl~~~~~~-----~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~- 386 (397)
+|++|++||+||.|. -.|+.+.+++|-.+.+...+.. +.......|+|.|||.|+|+++..|||+.-+-+
T Consensus 302 lp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s 381 (420)
T KOG1871|consen 302 LPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRS 381 (420)
T ss_pred cchhhhhhhhHHHHHhccchhhhchhhhccceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeec
Confidence 999999999999763 3699999999988888754432 223445689999999999999999999999965
Q ss_pred CCCCeEEecCC
Q psy1713 387 SSGSYHYFDDE 397 (397)
Q Consensus 387 ~~~~W~~fdDs 397 (397)
..+.|+++||+
T Consensus 382 ~~~gw~rIDD~ 392 (420)
T KOG1871|consen 382 VPSGWQRIDDA 392 (420)
T ss_pred ccCceeEeccc
Confidence 45679999995
No 38
>KOG2026|consensus
Probab=99.95 E-value=1.5e-26 Score=208.05 Aligned_cols=266 Identities=22% Similarity=0.300 Sum_probs=203.7
Q ss_pred CCCCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCC--CccCh
Q psy1713 69 QGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSG--SAIRP 146 (397)
Q Consensus 69 ~~~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~--~~~~p 146 (397)
....++.+||.|+.++-|+|++||+|.+.+++|+|++...... +....++..|..+++++|.... ..++|
T Consensus 128 ~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~--------d~~~~lv~rl~~l~rklw~~r~fk~hvSp 199 (442)
T KOG2026|consen 128 STYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYF--------DNLTELVQRLGELIRKLWNPRNFKGHVSP 199 (442)
T ss_pred CcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccccccc--------chhHHHHHHHHHHHHHhcChhhhcccCCH
Confidence 3456788999999999999999999999999999998764322 1124489999999999998765 89999
Q ss_pred HHHHHHHHHH-hccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCcccc
Q psy1713 147 ELIIKKLKLI-ARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHIST 225 (397)
Q Consensus 147 ~~~~~~l~~~-~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~ 225 (397)
.++++++-.. .+.|..++|-|+.|||.+||++||.++.... +..++|+..|+|.++...+=..
T Consensus 200 he~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k----------~~~SIi~~~fqG~~ri~k~~~~------ 263 (442)
T KOG2026|consen 200 HEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK----------KASSIIHKSFQGEVRIVKEKQG------ 263 (442)
T ss_pred HHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCC----------CchhHhhHhhcceEEeeeeccc------
Confidence 9999998755 5689999999999999999999999875432 2458999999999876543222
Q ss_pred ccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCC--------------CCCHHHHHHhcccceee
Q psy1713 226 QCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQ--------------SSSLDEALGHFFAKEYL 291 (397)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~--------------~~sL~~~L~~~~~~E~l 291 (397)
..+.......+.-+| +.|+|++|+ ...|-+.|..|.+..+-
T Consensus 264 -------~~~~~~~~~i~~~~F------------------l~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~ 318 (442)
T KOG2026|consen 264 -------EASENENKEISVMPF------------------LYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVT 318 (442)
T ss_pred -------cccccccceEEEEee------------------EEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceee
Confidence 011122233346678 999998873 45788888888665433
Q ss_pred CCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeec---ccCCCCCCcccccC-CceeccCccccc--CCCCCcceEEE
Q psy1713 292 GGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRF---NYHGLKNSRSVQVP-LHLEFGKFMHCR--MSHSQLKYKLV 365 (397)
Q Consensus 292 ~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf---~~~~~K~~~~v~fp-~~Ldl~~~~~~~--~~~~~~~Y~L~ 365 (397)
+ +.-. ..+ +++.+.++|++||+|++|| .|-..|+.+.|+|| ..+++.+..... ..+.-..|.|.
T Consensus 319 e----~~~~-----~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (442)
T KOG2026|consen 319 E----VVTP-----KLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLV 388 (442)
T ss_pred e----ecch-----hhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccch
Confidence 3 2111 122 7889999999999999999 44568999999999 467776654432 22334789999
Q ss_pred EEEEeecCCCCCCceEEEEec-CCCCeEEecC
Q psy1713 366 SAVIHHGSSPDSGHYTCIGST-SSGSYHYFDD 396 (397)
Q Consensus 366 avv~H~G~~~~~GHY~~~vr~-~~~~W~~fdD 396 (397)
|-++|. ..-|||...+++ ..++||..+|
T Consensus 389 ~N~i~~---~e~~~~riqi~~~~s~kW~eiqd 417 (442)
T KOG2026|consen 389 ANAIHE---DEDGNFRIQIYDNSSEKWYEIQD 417 (442)
T ss_pred hhhhcC---cccCceEEEEEeCCCcceEEecc
Confidence 999997 467999999987 4889999988
No 39
>KOG1275|consensus
Probab=99.73 E-value=6.3e-17 Score=159.90 Aligned_cols=275 Identities=17% Similarity=0.253 Sum_probs=183.1
Q ss_pred CCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHHHHH
Q psy1713 74 AGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKL 153 (397)
Q Consensus 74 ~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~~~l 153 (397)
.++||.-.+-+-|.|++||.|+.+|+++..++.+. |.+ ..|++|+|.-||.++-.+.+.......|++++
T Consensus 498 ~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~-----C~~-----e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf 567 (1118)
T KOG1275|consen 498 TYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI-----CTK-----EFCLLCELGFLFTMLDSSTGDPCQANNFLRAF 567 (1118)
T ss_pred eeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc-----cch-----hHHHHHHHHHHHHHHhhhcCCccchhHHHHHH
Confidence 45899999999999999999999999999999872 221 28999999999999988888999999999998
Q ss_pred HHHhcccccc---c-------------cccHHHHHHHHHHHHHHHHH-hcCCCCCCCCCC---CCCCCccccccCeeecc
Q psy1713 154 KLIARHLEHH---R-------------QEDSHEFLTYLIEGIQKSYL-KAIPSSNKLDSA---SKETTPIYQLFGTYLRT 213 (397)
Q Consensus 154 ~~~~~~f~~~---~-------------QqDA~Efl~~ll~~L~~e~~-~~~~~~~~~~~~---~~~~~~i~~~F~g~~~~ 213 (397)
+.....-..| . -|||..|..-..+...+-.. .+....+..+.. ......+.+.|+-.++.
T Consensus 568 ~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e~ 647 (1118)
T KOG1275|consen 568 RTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEIEK 647 (1118)
T ss_pred hhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhHHHH
Confidence 8653211110 1 12333222222111111000 000011111111 12345788999999999
Q ss_pred eEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCC---------CCCCHHHHHHh
Q psy1713 214 EVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIR---------QSSSLDEALGH 284 (397)
Q Consensus 214 ~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~---------~~~sL~~~L~~ 284 (397)
...|..|+..+.+ .... ..+.+..+ ......+.|+.
T Consensus 648 ~~~Cg~C~~~~~~-----------------~k~l------------------~~~~lsyp~~~~id~~~~~~~F~~iL~R 692 (1118)
T KOG1275|consen 648 SLRCGECGDEKQK-----------------SKSL------------------LRKVLSYPNVLLIDTLAKSNNFVEILKR 692 (1118)
T ss_pred hhhcccccchhhh-----------------hhhh------------------hheeecCCCccchhhcccccchHHHhhh
Confidence 9999999998877 2222 22222222 12233444443
Q ss_pred cccceeeCCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeecc-----cC--CCCCCcccccCCceeccCccccc---
Q psy1713 285 FFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFN-----YH--GLKNSRSVQVPLHLEFGKFMHCR--- 354 (397)
Q Consensus 285 ~~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~-----~~--~~K~~~~v~fp~~Ldl~~~~~~~--- 354 (397)
-.. +.....-.|+.|++......+..+..+|++|.|...-+. |- ..|....|-+|+++.|...-...
T Consensus 693 ~l~---l~kn~~~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v 769 (1118)
T KOG1275|consen 693 SLS---LFKNKQAWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLV 769 (1118)
T ss_pred hhh---cccccccccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceee
Confidence 222 222222689999999999999999999999999988772 21 24667788899887775422110
Q ss_pred --------------CCCCCcceEEEEEEEeecCCCCCCceEEEEecC---------CCCeEEecC
Q psy1713 355 --------------MSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTS---------SGSYHYFDD 396 (397)
Q Consensus 355 --------------~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~~---------~~~W~~fdD 396 (397)
....-.+|+|.|+|+|.|.+-+.+|++++||.. +.+||.|||
T Consensus 770 ~~~s~~~~~~~~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFND 834 (1118)
T KOG1275|consen 770 STISDLDVSPLPDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFND 834 (1118)
T ss_pred eeeccccCCCCccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcc
Confidence 012347999999999999988999999999841 459999998
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.86 E-value=4e-08 Score=85.47 Aligned_cols=80 Identities=21% Similarity=0.446 Sum_probs=57.8
Q ss_pred eecCCCCCcceeEEEEEeeeCCceEEEEEeecccCCCCCCcccccCCceeccCcccccCCCCCcceEEEEEEEeecCCCC
Q psy1713 297 YRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPD 376 (397)
Q Consensus 297 ~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~ 376 (397)
--|.+|+.+.. .+++.+.++|+++.+|+. .| .|.. |+..|.-. -.+..|++.+||-+.- +
T Consensus 171 ~pCn~C~~ksQ-~rkMvlekv~~vfmLHFV----eG--------LP~n-dl~~ysF~---feg~~Y~Vt~VIQY~~---~ 230 (275)
T PF15499_consen 171 GPCNSCNSKSQ-RRKMVLEKVPPVFMLHFV----EG--------LPHN-DLQHYSFH---FEGCLYQVTSVIQYQA---N 230 (275)
T ss_pred CCCcccCChHH-hHhhhhhcCchhhhhhhh----cc--------CCcc-CCCcccee---ecCeeEEEEEEEEEec---c
Confidence 46999988754 567789999999999964 12 1111 22221111 1256899999999865 3
Q ss_pred CCceEEEEecCCCCeEEecC
Q psy1713 377 SGHYTCIGSTSSGSYHYFDD 396 (397)
Q Consensus 377 ~GHY~~~vr~~~~~W~~fdD 396 (397)
--|+++|+++.+|.|.++||
T Consensus 231 ~~HFvtWi~~~dGsWLecDD 250 (275)
T PF15499_consen 231 LNHFVTWIRDSDGSWLECDD 250 (275)
T ss_pred CceeEEEEEcCCCCeEeecc
Confidence 56999999999999999999
No 41
>KOG1864|consensus
Probab=97.56 E-value=0.00024 Score=71.34 Aligned_cols=105 Identities=23% Similarity=0.230 Sum_probs=59.3
Q ss_pred cccCCCcchHHHHHHHhhCcHHHHHHHhcccccccccc---ccCCCcch------hHHHHHHHHHHHHHhcC--CCccCh
Q psy1713 78 LVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCE---KQSGYQFE------CLVCAMRKTLAHCQAKS--GSAIRP 146 (397)
Q Consensus 78 L~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~---~~~~~~~~------~l~~~l~~l~~~~~~~~--~~~~~p 146 (397)
|.|.||+||.|++||+|..+|+|+..+........... +....... +...+....+... ... ....+-
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~ 112 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN-SSSNESFNLSV 112 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc-CCccccccchH
Confidence 99999999999999999999999988865543221110 00000001 1111111111111 000 112222
Q ss_pred HHHHHHHH---HHhccccccccccHHHHHHHHHHHHHHHH
Q psy1713 147 ELIIKKLK---LIARHLEHHRQEDSHEFLTYLIEGIQKSY 183 (397)
Q Consensus 147 ~~~~~~l~---~~~~~f~~~~QqDA~Efl~~ll~~L~~e~ 183 (397)
..+...+. +....|....|+||++++.-++-.+...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 113 TQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred HHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 33333332 23456888999999999998887777654
No 42
>KOG3556|consensus
Probab=96.37 E-value=0.00097 Score=63.87 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=23.1
Q ss_pred CCCCcccCCCcchHHHHHHHhhCcHHHHHHH
Q psy1713 74 AGAGLVNAINTCYLNSCLQALFHIPSFHNWL 104 (397)
Q Consensus 74 ~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l 104 (397)
...|++-.-|.||+||.|-+++.-....+-+
T Consensus 367 k~kgiqgh~nscyldstlf~~f~f~sv~dS~ 397 (724)
T KOG3556|consen 367 KIKGIQGHPNSCYLDSTLFKPFEFDSVTDST 397 (724)
T ss_pred ccccccCCcchhhcccccccccccccccccc
Confidence 3468888889999999998888655444433
No 43
>KOG1887|consensus
Probab=95.19 E-value=0.0089 Score=60.84 Aligned_cols=187 Identities=14% Similarity=0.261 Sum_probs=104.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhcCCCCCC-------CC--CCCCCCCccccccCeeecceEEeCCCCcccccccccccc
Q psy1713 163 HRQEDSHEFLTYLIEGIQKSYLKAIPSSNK-------LD--SASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRL 233 (397)
Q Consensus 163 ~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~-------~~--~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~~ 233 (397)
....++.++|..++..|++.........+. .. ......+...++|+.....+..|..|...++-+.
T Consensus 547 ~~~~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~pe----- 621 (806)
T KOG1887|consen 547 KHEGVYSELLSDLLLSLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPE----- 621 (806)
T ss_pred HhhhhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcc-----
Confidence 344578888888888888775433110000 00 0011235677789888888899999988876510
Q ss_pred ccccCCCCccccccccccccccccCCCCCccceeeeecCC---------CCCCHHHHHHhcccceeeCCCCceecC----
Q psy1713 234 DSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIR---------QSSSLDEALGHFFAKEYLGGDNLYRCE---- 300 (397)
Q Consensus 234 ~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~---------~~~sL~~~L~~~~~~E~l~~~~~~~C~---- 300 (397)
...| .+.+... +..+.++.|+. ...+. +..|+
T Consensus 622 ----------qsS~-------------------~~~~~a~slr~~k~a~~n~~f~~ilk~-i~m~~-----~m~cD~~~g 666 (806)
T KOG1887|consen 622 ----------QSSY-------------------GIVIAADSLRQLKCAFQNITFEDILKN-IRMND-----KMLCDKETG 666 (806)
T ss_pred ----------hhhh-------------------hhhccchhhhhHHHHhhhhhHHHHHHH-hhhhh-----hhcccccCC
Confidence 1111 1111111 23566666665 22222 24454
Q ss_pred CCCCcceeEEEEEeeeCCceEEEEEeecccCCCCC--CcccccCCceeccCcccccCCCCCcceEEEEEEEeecCCCCCC
Q psy1713 301 KCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGLKN--SRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSG 378 (397)
Q Consensus 301 ~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~~~K~--~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~~G 378 (397)
.||+..- ....|.++|+|++|.+..-..-..|. .+...+-.++|++..-. .......+|+|+++|.-... ++
T Consensus 667 GCgk~n~--v~h~is~~P~vftIvlewEk~ETe~eI~~T~~aL~teidis~~y~-~g~ep~t~yrLVSmv~~~e~---~~ 740 (806)
T KOG1887|consen 667 GCGKANL--VHHILSPCPPVFTIVLEWEKSETEKEISETTKALATEIDISRLYR-EGLEPNTKYRLVSMVGNHEE---GE 740 (806)
T ss_pred CCcchhh--hhhhcCCCCCeeEeeeehhcccchHHHHHHHHHHHhhhhHHHHhh-hccCcCceeEEEEEeeeccc---cc
Confidence 3655432 23456789999999665321111111 12233445666664322 22244679999999987642 58
Q ss_pred ceEEEEecCCCCeE--EecC
Q psy1713 379 HYTCIGSTSSGSYH--YFDD 396 (397)
Q Consensus 379 HY~~~vr~~~~~W~--~fdD 396 (397)
+|.|+... .++|. ..+|
T Consensus 741 ~~~C~Aye-~Nrwvs~r~~~ 759 (806)
T KOG1887|consen 741 EYICFAYE-PNRWVSLRHED 759 (806)
T ss_pred eEEEeecc-CCcchhhHHHH
Confidence 99999988 66787 4443
No 44
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=94.01 E-value=0.028 Score=46.92 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=16.0
Q ss_pred CCCcccCCCcchHHHHHHHhhCc
Q psy1713 75 GAGLVNAINTCYLNSCLQALFHI 97 (397)
Q Consensus 75 ~~GL~N~GNtCy~NSvLQ~L~~~ 97 (397)
.+|+.|.+|+||+||++|.+..+
T Consensus 33 ft~~PN~~dnCWlNaL~QL~~~~ 55 (193)
T PF05408_consen 33 FTGLPNNHDNCWLNALLQLFRYV 55 (193)
T ss_dssp EE----SSSTHHHHHHHHHHHHH
T ss_pred EecCCCCCCChHHHHHHHHHHHc
Confidence 35999999999999999988543
No 45
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=90.70 E-value=0.66 Score=43.28 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHhccccccccccHHHHHHHHHHHHHH
Q psy1713 145 RPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQK 181 (397)
Q Consensus 145 ~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~ 181 (397)
+|..|...+-.. .....|+-.||+++|..|++.+..
T Consensus 144 ~~~~fVa~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 144 DPAPFVAWCYAS-TNAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp --HHHHHHHHHH-TT--TTS---HHHHHHHHHTTB-T
T ss_pred ChHHHHHHHHHH-cCCCCCCCcCHHHHHHHHHHhccc
Confidence 466666655543 345678999999999998876654
No 46
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=79.92 E-value=3 Score=35.13 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=17.6
Q ss_pred CCceEEEEecCCCCeEEecCC
Q psy1713 377 SGHYTCIGSTSSGSYHYFDDE 397 (397)
Q Consensus 377 ~GHY~~~vr~~~~~W~~fdDs 397 (397)
.||.+.+.+. .+.||.+||+
T Consensus 138 ~~Havfa~~t-s~gWy~iDDe 157 (193)
T PF05408_consen 138 QEHAVFACVT-SDGWYAIDDE 157 (193)
T ss_dssp TTEEEEEEEE-TTCEEEEETT
T ss_pred CcceEEEEEe-eCcEEEecCC
Confidence 4999999998 6679999996
No 47
>PF14353 CpXC: CpXC protein
Probab=77.95 E-value=3.7 Score=32.89 Aligned_cols=12 Identities=33% Similarity=1.032 Sum_probs=9.8
Q ss_pred eecCCCCCccee
Q psy1713 297 YRCEKCGRKVEA 308 (397)
Q Consensus 297 ~~C~~C~~~~~~ 308 (397)
+.|+.||.....
T Consensus 39 ~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 39 FTCPSCGHKFRL 50 (128)
T ss_pred EECCCCCCceec
Confidence 999999987543
No 48
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=76.04 E-value=2.5 Score=28.83 Aligned_cols=35 Identities=23% Similarity=0.531 Sum_probs=27.5
Q ss_pred CceecCCCCCcceeEEEEEee--eCCceEEEEEeecc
Q psy1713 295 NLYRCEKCGRKVEATKRFSVD--KPPNVLRLQLKRFN 329 (397)
Q Consensus 295 ~~~~C~~C~~~~~~~k~~~i~--~lP~iL~i~l~Rf~ 329 (397)
+.+.|++|+...-..+..... .+.+++=||.++|.
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 457899999887666666554 68899999999993
No 49
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=75.72 E-value=2.2 Score=21.57 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=11.2
Q ss_pred EEEecCCCCeEEecCC
Q psy1713 382 CIGSTSSGSYHYFDDE 397 (397)
Q Consensus 382 ~~vr~~~~~W~~fdDs 397 (397)
.+++. ++.||.|+++
T Consensus 2 ~W~~~-~~~wYy~~~~ 16 (19)
T PF01473_consen 2 GWVQD-NGNWYYFDSD 16 (19)
T ss_dssp EEEEE-TTEEEEETTT
T ss_pred cCEEE-CCEEEEeCCC
Confidence 35666 6899999874
No 50
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=64.44 E-value=7.6 Score=32.36 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.0
Q ss_pred EEEEEEeecCCCCCCceEEEEecCCCCeEEec
Q psy1713 364 LVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFD 395 (397)
Q Consensus 364 L~avv~H~G~~~~~GHY~~~vr~~~~~W~~fd 395 (397)
..|+|++.+ .|++|..|- +|.||-+|
T Consensus 99 ~~gfI~N~~-----~HWf~iRki-~~~wyNLD 124 (157)
T PF02099_consen 99 EFGFICNLS-----RHWFAIRKI-GGQWYNLD 124 (157)
T ss_dssp SSEEEEECT-----TEEEEEEEE-TTEEEEEC
T ss_pred ceEEEeccC-----cceEEEEee-CCeeEecc
Confidence 457889855 599999998 89999987
No 51
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=62.66 E-value=15 Score=36.94 Aligned_cols=63 Identities=25% Similarity=0.301 Sum_probs=41.3
Q ss_pred ceEEEEEeecc----cC--------CCCCCcccccCCceeccCcccccCCCCCcceEEEEEEEeec-CCC----------
Q psy1713 319 NVLRLQLKRFN----YH--------GLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHG-SSP---------- 375 (397)
Q Consensus 319 ~iL~i~l~Rf~----~~--------~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G-~~~---------- 375 (397)
-+|++.+.|=. +. ..-+++.|++..++.+. +..|+|.+.|||.- +..
T Consensus 479 GvLIfyVeRRq~k~~~~Gec~tg~rs~ind~pidv~q~i~in----------gimyrL~SAVCYK~~d~~~d~C~~~dif 548 (666)
T PF03292_consen 479 GVLIFYVERRQNKNTFSGECYTGFRSRINDSPIDVSQEITIN----------GIMYRLKSAVCYKIGDQFFDGCNGNDIF 548 (666)
T ss_pred ceEEEEEeehhccceeccccccchhhhhcCcccccccceeec----------ceeeeeehhheeeccccccCCCCCCcce
Confidence 67899988862 11 23456677777777777 78999999999942 211
Q ss_pred CCCceEEEEecCCCCeE
Q psy1713 376 DSGHYTCIGSTSSGSYH 392 (397)
Q Consensus 376 ~~GHY~~~vr~~~~~W~ 392 (397)
--|||+ .++.+.|.|.
T Consensus 549 lkG~yt-IlfTe~Gpw~ 564 (666)
T PF03292_consen 549 LKGYYT-ILFTEMGPWM 564 (666)
T ss_pred eceeEE-EEEecCCcee
Confidence 127765 5556567554
No 52
>PF10748 DUF2531: Protein of unknown function (DUF2531); InterPro: IPR019684 This entry represents proteins with unknown function and appears to be restricted to Enterobacteriaceae.
Probab=53.05 E-value=21 Score=28.67 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=25.1
Q ss_pred CcceEEEEEEEeecCCCCCCceEEEEecCCCCeEEe
Q psy1713 359 QLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYF 394 (397)
Q Consensus 359 ~~~Y~L~avv~H~G~~~~~GHY~~~vr~~~~~W~~f 394 (397)
-..++|.|||- .+++|+++++.+.++|.+.
T Consensus 33 Ls~WrlqGiVg------~~~~~~gwl~~p~g~W~Rv 62 (132)
T PF10748_consen 33 LSQWRLQGIVG------QGDRWIGWLQDPQGKWLRV 62 (132)
T ss_pred cccceEccEEC------CCCcEEEEEECCCCCeEEe
Confidence 35799999985 3479999999999999875
No 53
>KOG1871|consensus
Probab=51.05 E-value=6.8 Score=37.17 Aligned_cols=36 Identities=28% Similarity=0.148 Sum_probs=31.1
Q ss_pred CCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccc
Q psy1713 73 PAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDT 108 (397)
Q Consensus 73 ~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~ 108 (397)
..++|+.|.||-|+.++..|.+.+..++...+-...
T Consensus 176 ~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~ 211 (420)
T KOG1871|consen 176 FTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQ 211 (420)
T ss_pred ccccccccccccccccchhhcccccCchhhhcCCcc
Confidence 357999999999999999999999998888775443
No 54
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=48.92 E-value=14 Score=25.64 Aligned_cols=32 Identities=25% Similarity=0.599 Sum_probs=17.5
Q ss_pred eecCCCCCcceeEEEEEee--eCCceEEEEEeec
Q psy1713 297 YRCEKCGRKVEATKRFSVD--KPPNVLRLQLKRF 328 (397)
Q Consensus 297 ~~C~~C~~~~~~~k~~~i~--~lP~iL~i~l~Rf 328 (397)
|.|++|+...-..+++... .+-+++=|+.+||
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f 34 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKF 34 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEE
Confidence 6899999864444333321 2334455555555
No 55
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=45.16 E-value=16 Score=25.34 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=21.0
Q ss_pred eEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCc
Q psy1713 214 EVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHI 263 (397)
Q Consensus 214 ~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~ 263 (397)
.++|.+|+++... |..- .....|..|+..
T Consensus 19 ~VkCpdC~N~q~v-----------------Fsha----st~V~C~~CG~~ 47 (67)
T COG2051 19 RVKCPDCGNEQVV-----------------FSHA----STVVTCLICGTT 47 (67)
T ss_pred EEECCCCCCEEEE-----------------eccC----ceEEEecccccE
Confidence 5789999999877 4432 345688888765
No 56
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=44.77 E-value=21 Score=38.47 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.7
Q ss_pred ecCCCCCCceEEEEecCCCCeEEec
Q psy1713 371 HGSSPDSGHYTCIGSTSSGSYHYFD 395 (397)
Q Consensus 371 ~G~~~~~GHY~~~vr~~~~~W~~fd 395 (397)
.|....+|||+..+|.+++++|.||
T Consensus 56 v~p~~~sghwimlikg~gn~y~lfd 80 (1439)
T PF12252_consen 56 VSPRQDSGHWIMLIKGQGNQYYLFD 80 (1439)
T ss_pred cCCCCcCceeEEEEEcCCCceEEec
Confidence 3555678999999999999999998
No 57
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=36.43 E-value=26 Score=27.36 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=18.9
Q ss_pred EEEEEEEeecCCCCCCceEEEEecCCCCeEEecCC
Q psy1713 363 KLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397 (397)
Q Consensus 363 ~L~avv~H~G~~~~~GHY~~~vr~~~~~W~~fdDs 397 (397)
-+.|||+-+-. + +|.++|.|++|||.
T Consensus 57 V~~AViVRtkk----~-----~rR~DGs~i~FddN 82 (122)
T COG0093 57 VVKAVVVRTKK----E-----VRRPDGSYIKFDDN 82 (122)
T ss_pred eEEEEEEEeCC----c-----eEcCCCCEEEeCCc
Confidence 46788886654 1 34569999999994
No 58
>KOG1867|consensus
Probab=34.95 E-value=14 Score=36.92 Aligned_cols=34 Identities=24% Similarity=0.112 Sum_probs=28.1
Q ss_pred CCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHH
Q psy1713 71 RVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWL 104 (397)
Q Consensus 71 ~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l 104 (397)
......|+.+.+|+|+||+.+|.++.++.|.-+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~ 106 (492)
T KOG1867|consen 73 HKLEHSGNKKHNNTIDVNNGLLYCFACPDFIYDA 106 (492)
T ss_pred ccccccccccccccceeehhhheeccCCcEeecc
Confidence 3345689999999999999999999998665544
No 59
>KOG2906|consensus
Probab=33.84 E-value=96 Score=23.39 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=15.6
Q ss_pred eecCCCCCcceeEEEEEeeeC
Q psy1713 297 YRCEKCGRKVEATKRFSVDKP 317 (397)
Q Consensus 297 ~~C~~C~~~~~~~k~~~i~~l 317 (397)
-.|++|+.......++++.+.
T Consensus 66 ~~Cp~Cgh~rayF~qlQtRSA 86 (105)
T KOG2906|consen 66 ATCPTCGHERAYFMQLQTRSA 86 (105)
T ss_pred CcCCCCCCCceEEEEeeeccC
Confidence 689999998776666666544
No 60
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=30.53 E-value=51 Score=20.49 Aligned_cols=30 Identities=27% Similarity=0.587 Sum_probs=19.4
Q ss_pred eEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCC
Q psy1713 214 EVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSH 262 (397)
Q Consensus 214 ~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~ 262 (397)
..+|..||+.-.. ..++.. .....|..|+.
T Consensus 5 ey~C~~Cg~~fe~-----------------~~~~~~--~~~~~CP~Cg~ 34 (42)
T PF09723_consen 5 EYRCEECGHEFEV-----------------LQSISE--DDPVPCPECGS 34 (42)
T ss_pred EEEeCCCCCEEEE-----------------EEEcCC--CCCCcCCCCCC
Confidence 4678888887655 444433 45667777765
No 61
>KOG2935|consensus
Probab=29.58 E-value=7.9 Score=34.31 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=20.4
Q ss_pred EEEEEeecCCCCCCceEEEEecCCCCeEEec
Q psy1713 365 VSAVIHHGSSPDSGHYTCIGSTSSGSYHYFD 395 (397)
Q Consensus 365 ~avv~H~G~~~~~GHY~~~vr~~~~~W~~fd 395 (397)
+|+|||.-. ||.+..|- +++||.+|
T Consensus 104 rafICnl~e-----HWF~iRKf-g~qWfnln 128 (315)
T KOG2935|consen 104 RAFICNLKE-----HWFTIRKF-GKQWFNLN 128 (315)
T ss_pred hhhhhcchh-----hhhhHhhh-cchhccch
Confidence 468888774 99998777 88999987
No 62
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=27.27 E-value=69 Score=21.67 Aligned_cols=20 Identities=15% Similarity=-0.072 Sum_probs=17.0
Q ss_pred CCCCceEEEEecCCCCeEEec
Q psy1713 375 PDSGHYTCIGSTSSGSYHYFD 395 (397)
Q Consensus 375 ~~~GHY~~~vr~~~~~W~~fd 395 (397)
....|.+.-++. +++|+.||
T Consensus 46 ~~~~H~W~ev~~-~~~W~~~D 65 (68)
T smart00460 46 IWEAHAWAEVYL-EGGWVPVD 65 (68)
T ss_pred CCCcEEEEEEEE-CCCeEEEe
Confidence 467899999988 58999998
No 63
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=26.79 E-value=1.3e+02 Score=21.70 Aligned_cols=60 Identities=12% Similarity=0.223 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhcCCCccChHHHHHHHH-HHhccccccccccHHHHHHHHHHHHHHHHH
Q psy1713 125 LVCAMRKTLAHCQAKSGSAIRPELIIKKLK-LIARHLEHHRQEDSHEFLTYLIEGIQKSYL 184 (397)
Q Consensus 125 l~~~l~~l~~~~~~~~~~~~~p~~~~~~l~-~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~ 184 (397)
++..+++.|..-....-..+....++..+. .+.|.|-.-.=+||+.++..-++.|.+++-
T Consensus 11 li~~iq~yf~~E~d~eiG~~~Ae~LLDF~~~elGp~~YNqgv~DA~~~~~~r~~~l~~~ly 71 (76)
T PF09932_consen 11 LIDKIQRYFAEELDEEIGDFEAEFLLDFFIEELGPHFYNQGVQDAQAVLEERMEDLEEELY 71 (76)
T ss_pred HHHHHHHHHHHHhcCcHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 566666666654444435556666666543 567777666778999999999999988864
No 64
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=26.61 E-value=67 Score=27.76 Aligned_cols=52 Identities=21% Similarity=0.441 Sum_probs=25.0
Q ss_pred eecCCCCCcceeEEEEEeeeCCceEEEEEeec-ccCC---CCCCcccccCC-ceeccC
Q psy1713 297 YRCEKCGRKVEATKRFSVDKPPNVLRLQLKRF-NYHG---LKNSRSVQVPL-HLEFGK 349 (397)
Q Consensus 297 ~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf-~~~~---~K~~~~v~fp~-~Ldl~~ 349 (397)
+.|+.||-+..-.+...- .-|.-+.+.+.-= +.++ ......|.+|+ .|.+.+
T Consensus 31 f~C~~CGyr~~ev~~~g~-~~p~r~~l~V~~~~DL~r~VvkS~tati~IPEl~lei~p 87 (192)
T TIGR00310 31 TICEHCGYRSNDVKTLGA-KEPKRYILKIDDEADLNRRVVKSESATIRIPELGLDIEP 87 (192)
T ss_pred EECCCCCCccceeEECCC-CCCEEEEEEECChhcccceEEEcCCcEEEccceEEEECC
Confidence 889999876443332221 2244333333211 1111 22344677777 466654
No 65
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=26.42 E-value=54 Score=22.27 Aligned_cols=13 Identities=23% Similarity=0.639 Sum_probs=10.7
Q ss_pred eEEeCCCCccccc
Q psy1713 214 EVTCNSCSHISTQ 226 (397)
Q Consensus 214 ~~~C~~C~~~s~~ 226 (397)
.++|..|+++...
T Consensus 11 ~VkCp~C~n~q~v 23 (59)
T PRK00415 11 KVKCPDCGNEQVV 23 (59)
T ss_pred EEECCCCCCeEEE
Confidence 5789999998776
No 66
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=26.26 E-value=38 Score=18.43 Aligned_cols=10 Identities=30% Similarity=0.879 Sum_probs=7.5
Q ss_pred CceecCCCCC
Q psy1713 295 NLYRCEKCGR 304 (397)
Q Consensus 295 ~~~~C~~C~~ 304 (397)
..|.|++||.
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 3489999974
No 67
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=26.13 E-value=67 Score=26.87 Aligned_cols=60 Identities=20% Similarity=0.466 Sum_probs=27.2
Q ss_pred cccceeeCCCCceecCCCCCcceeEEEEEeeeCCc--eEEEEEeec-ccCC---CCCCcccccCC-ceecc
Q psy1713 285 FFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPN--VLRLQLKRF-NYHG---LKNSRSVQVPL-HLEFG 348 (397)
Q Consensus 285 ~~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~--iL~i~l~Rf-~~~~---~K~~~~v~fp~-~Ldl~ 348 (397)
||++=.+.. +.|+.||-+..-.+... ..-|. .+.+++.-= +.++ .--...|.+|+ .|.+.
T Consensus 22 ~F~evii~s---f~C~~CGyk~~ev~~~~-~~~~~G~r~tl~V~~~~DL~r~VvkS~~ati~IPEl~~ei~ 88 (161)
T PF03367_consen 22 YFKEVIIMS---FECEHCGYKNNEVKSGG-QIQPKGVRITLKVESPEDLNRQVVKSDTATIEIPELGLEIE 88 (161)
T ss_dssp TTEEEEEEE---EE-TTT--EEEEEEEEC-SS-SSEEEEEEEE-SHHHHC-EEEE-TT-EEEEGGGTEEE-
T ss_pred CCceEEEEE---eECCCCCCEeeeEEECc-cCCCCceEEEEEECCHHHhcceEEecCcEEEEEeecceEEc
Confidence 445544543 89999997644333222 13356 566665431 1111 22345788887 46665
No 68
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=25.01 E-value=42 Score=21.97 Aligned_cols=10 Identities=30% Similarity=0.870 Sum_probs=8.0
Q ss_pred eecCCCCCcc
Q psy1713 297 YRCEKCGRKV 306 (397)
Q Consensus 297 ~~C~~C~~~~ 306 (397)
|.|+.|+...
T Consensus 35 w~CP~C~a~K 44 (50)
T cd00730 35 WVCPVCGAGK 44 (50)
T ss_pred CCCCCCCCcH
Confidence 8999998653
No 69
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=24.87 E-value=38 Score=18.48 Aligned_cols=13 Identities=38% Similarity=1.232 Sum_probs=9.9
Q ss_pred CCCceecCCCCCc
Q psy1713 293 GDNLYRCEKCGRK 305 (397)
Q Consensus 293 ~~~~~~C~~C~~~ 305 (397)
|+..|.|+.|++.
T Consensus 11 ~~k~~~C~~C~k~ 23 (26)
T PF13465_consen 11 GEKPYKCPYCGKS 23 (26)
T ss_dssp SSSSEEESSSSEE
T ss_pred CCCCCCCCCCcCe
Confidence 4556999999864
No 70
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=24.73 E-value=49 Score=25.13 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=17.8
Q ss_pred CCCCceEEEEecCCCCeEEec
Q psy1713 375 PDSGHYTCIGSTSSGSYHYFD 395 (397)
Q Consensus 375 ~~~GHY~~~vr~~~~~W~~fd 395 (397)
...+|.++-|..++++|+.+|
T Consensus 92 ~~~~H~w~ev~~~~~~W~~~D 112 (113)
T PF01841_consen 92 GNDNHAWVEVYLPGGGWIPLD 112 (113)
T ss_dssp SEEEEEEEEEEETTTEEEEEE
T ss_pred CCCCEEEEEEEEcCCcEEEcC
Confidence 455799999988888999997
No 71
>KOG2463|consensus
Probab=24.58 E-value=1.1e+02 Score=28.60 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=24.7
Q ss_pred CceecCCCCCcceeEEEEEeeeCCceEEEEEe-ecccC
Q psy1713 295 NLYRCEKCGRKVEATKRFSVDKPPNVLRLQLK-RFNYH 331 (397)
Q Consensus 295 ~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~-Rf~~~ 331 (397)
.+..|+.||.++...-...+..= --+..|++ ||.|+
T Consensus 256 ~k~FCp~CG~~TL~K~aVsv~~d-G~~~~h~k~r~~~n 292 (376)
T KOG2463|consen 256 PKDFCPSCGHKTLTKCAVSVDED-GNGQTHFKKRFQWN 292 (376)
T ss_pred chhcccccCCCeeeEEEEEecCC-CceeEEeecccccc
Confidence 35789999998555444444433 45778887 98774
No 72
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=23.75 E-value=90 Score=26.10 Aligned_cols=52 Identities=19% Similarity=0.446 Sum_probs=26.9
Q ss_pred eecCCCCCcceeEEEEEeeeCCc--eEEEEEeec-ccCC---CCCCcccccCC-ceeccC
Q psy1713 297 YRCEKCGRKVEATKRFSVDKPPN--VLRLQLKRF-NYHG---LKNSRSVQVPL-HLEFGK 349 (397)
Q Consensus 297 ~~C~~C~~~~~~~k~~~i~~lP~--iL~i~l~Rf-~~~~---~K~~~~v~fp~-~Ldl~~ 349 (397)
+.|+.||-+..-.+... ..-|+ .+.+++.-= +.++ .-....|.+|+ .|.+.+
T Consensus 30 f~C~~CGyk~~ev~~~~-~~~p~G~r~~l~V~~~~DL~r~VvkS~ta~i~IPEl~~ei~p 88 (160)
T smart00709 30 FECEHCGYRNNEVKSGG-AIEPKGTRITLKVESPEDLNRDVVKSETATISIPELDLEIPP 88 (160)
T ss_pred EECCCCCCccceEEECc-ccCCCceEEEEEECChhhccceEEEcCCcEEEeeeeeEEecC
Confidence 89999997744332221 12455 455555321 2211 22344777887 466653
No 73
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=23.10 E-value=60 Score=30.49 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=13.1
Q ss_pred EEEeecCCCCCCceEEEEec
Q psy1713 367 AVIHHGSSPDSGHYTCIGST 386 (397)
Q Consensus 367 vv~H~G~~~~~GHY~~~vr~ 386 (397)
.++..|. .++|||+ |.+.
T Consensus 264 ~~vF~G~-~~~GHYt-~~~~ 281 (320)
T PF08715_consen 264 YAVFTGS-TDSGHYT-HDVA 281 (320)
T ss_dssp SEEEESC-TTTCEEE-EEEE
T ss_pred EEEEEcC-CCccceE-EEcc
Confidence 3446895 8999999 6654
No 74
>PF01667 Ribosomal_S27e: Ribosomal protein S27; InterPro: IPR000592 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families include mammalian, yeast, Chlamydomonas reinhardtii and Entamoeba histolytica S27, and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0250 []. These proteins have from 62 to 87 amino acids. They contain, in their central section, a putative zinc-finger region of the type C-x(2)-C-x(14)-C-x(2)-C.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1QXF_A 3IZ6_X 2XZN_6 2XZM_6 3U5G_b 3IZB_X 3U5C_b.
Probab=22.86 E-value=72 Score=21.34 Aligned_cols=13 Identities=38% Similarity=0.851 Sum_probs=8.9
Q ss_pred eEEeCCCCccccc
Q psy1713 214 EVTCNSCSHISTQ 226 (397)
Q Consensus 214 ~~~C~~C~~~s~~ 226 (397)
.++|+.|+++...
T Consensus 7 ~VkCp~C~~~q~v 19 (55)
T PF01667_consen 7 DVKCPGCYNIQTV 19 (55)
T ss_dssp EEE-TTT-SEEEE
T ss_pred EEECCCCCCeeEE
Confidence 5789999998776
No 75
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=22.05 E-value=1e+02 Score=24.45 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=20.5
Q ss_pred cceEEEEEEEeecCCCCCCceEEEEec
Q psy1713 360 LKYKLVSAVIHHGSSPDSGHYTCIGST 386 (397)
Q Consensus 360 ~~Y~L~avv~H~G~~~~~GHY~~~vr~ 386 (397)
..=+..|+|+-......+-||+|||=.
T Consensus 81 ~~~dhFgFIcrEs~~~~~~~f~CyVFq 107 (129)
T cd01269 81 KHVDHFGFICRESPEPGLSQYICYVFQ 107 (129)
T ss_pred CCcceEEEEeccCCCCCcceEEEEEEE
Confidence 346789999988764455699999954
No 76
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=21.77 E-value=1.3e+02 Score=24.28 Aligned_cols=17 Identities=12% Similarity=0.299 Sum_probs=12.2
Q ss_pred eecceEEeCCCCccccc
Q psy1713 210 YLRTEVTCNSCSHISTQ 226 (397)
Q Consensus 210 ~~~~~~~C~~C~~~s~~ 226 (397)
...-...|..||+....
T Consensus 66 ~~p~~~~C~~CG~~~~~ 82 (135)
T PRK03824 66 EEEAVLKCRNCGNEWSL 82 (135)
T ss_pred ecceEEECCCCCCEEec
Confidence 44566799999977543
No 77
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=21.22 E-value=59 Score=25.21 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=10.8
Q ss_pred ceEEeCCCCccccc
Q psy1713 213 TEVTCNSCSHISTQ 226 (397)
Q Consensus 213 ~~~~C~~C~~~s~~ 226 (397)
-.++|++|++....
T Consensus 68 v~V~CP~C~K~TKm 81 (114)
T PF11023_consen 68 VQVECPNCGKQTKM 81 (114)
T ss_pred eeeECCCCCChHhh
Confidence 45789999998654
No 78
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=21.12 E-value=83 Score=34.17 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=14.2
Q ss_pred cccCCCCCCCCCccccCCcCCCCC
Q psy1713 20 LSLNNVSSPPSNERKSLSSKDSSS 43 (397)
Q Consensus 20 ~~~~~~~~~~~~~~~s~~~~~~~~ 43 (397)
....++.++|.+..++++.+.++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1164)
T PTZ00112 134 LTNISFFSSPTSIYSCLSNSLSSK 157 (1164)
T ss_pred ccccchhcCCcchhhhhccccccc
Confidence 344455666666667776665544
No 79
>PF14690 zf-ISL3: zinc-finger of transposase IS204/IS1001/IS1096/IS1165
Probab=20.93 E-value=99 Score=19.36 Aligned_cols=33 Identities=27% Similarity=0.543 Sum_probs=20.2
Q ss_pred eecCCCCCccee---EEEEEe-----eeCCceEEEEEeecc
Q psy1713 297 YRCEKCGRKVEA---TKRFSV-----DKPPNVLRLQLKRFN 329 (397)
Q Consensus 297 ~~C~~C~~~~~~---~k~~~i-----~~lP~iL~i~l~Rf~ 329 (397)
..|+.|+..... .+...+ ...|-+|.|...||.
T Consensus 3 ~~Cp~Cg~~~~~~~g~~~r~i~~l~~~~~~~~L~i~~~R~~ 43 (47)
T PF14690_consen 3 PRCPHCGSPSVHRHGYKTRRIRHLPIGGRPVYLRIRKRRYR 43 (47)
T ss_pred ccCCCcCCCceECCceEEEEEeecccCCEEEEEEEEeEEEE
Confidence 579999865421 223333 345667888888873
Done!