Query psy1713
Match_columns 397
No_of_seqs 259 out of 1379
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 22:40:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 2.4E-63 8.3E-68 477.0 28.2 290 71-397 4-335 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 3.3E-62 1.1E-66 472.7 25.3 291 70-397 57-372 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 5.3E-61 1.8E-65 457.6 28.4 288 70-397 4-319 (348)
4 1nb8_A Ubiquitin carboxyl-term 100.0 1.1E-59 3.7E-64 448.6 27.4 268 72-397 3-276 (353)
5 3i3t_A Ubiquitin carboxyl-term 100.0 3.1E-60 1.1E-64 453.5 22.0 282 74-397 2-327 (355)
6 2ayn_A Ubiquitin carboxyl-term 100.0 2.1E-58 7E-63 448.6 25.1 284 71-397 10-363 (404)
7 3mhs_A Ubiquitin carboxyl-term 100.0 4.1E-57 1.4E-61 448.1 28.5 287 71-397 137-450 (476)
8 1vjv_A Ubiquitin carboxyl-term 100.0 1.8E-57 6.2E-62 443.1 23.9 271 70-397 19-383 (415)
9 2f1z_A Ubiquitin carboxyl-term 100.0 1.5E-56 5E-61 448.1 24.8 274 66-397 165-445 (522)
10 3ihp_A Ubiquitin carboxyl-term 100.0 6.7E-55 2.3E-59 453.8 23.2 227 72-352 341-623 (854)
11 2vhf_A Ubiquitin carboxyl-term 100.0 1.2E-32 4E-37 253.1 13.4 225 72-395 6-307 (374)
12 2fe8_A PP1AB, ORF1AB, replicas 96.9 0.035 1.2E-06 50.1 15.3 30 145-175 144-173 (315)
13 3mp2_A Non-structural protein 96.7 0.01 3.5E-07 50.2 10.1 32 144-176 49-80 (211)
14 1qmy_A Protease, leader protea 87.5 0.28 9.4E-06 38.2 2.3 32 74-105 12-44 (167)
15 3o65_A Putative ataxin-3-like 58.7 6.5 0.00022 32.6 3.0 26 364-395 110-135 (191)
16 2ww6_A Fibritin, T4 fibritin; 54.1 5.2 0.00018 21.3 1.1 15 381-396 11-25 (27)
17 3a43_A HYPD, hydrogenase nicke 44.3 26 0.00089 27.4 4.3 17 210-226 66-82 (139)
18 2kdx_A HYPA, hydrogenase/ureas 28.9 1E+02 0.0036 23.0 5.4 17 210-226 69-85 (119)
19 1qxf_A GR2, 30S ribosomal prot 28.2 36 0.0012 22.7 2.3 30 213-263 6-35 (66)
20 3j20_W 30S ribosomal protein S 27.3 40 0.0014 22.2 2.3 13 214-226 15-27 (63)
21 2lic_A Vitellogenin; lipid tra 24.4 30 0.001 18.8 1.1 11 3-13 13-23 (35)
22 3u5c_b RP61, YS20, 40S ribosom 24.4 54 0.0019 22.8 2.7 29 214-263 34-62 (82)
23 4ayb_P DNA-directed RNA polyme 23.3 45 0.0016 20.5 1.9 30 214-263 3-32 (48)
24 1yuz_A Nigerythrin; rubrythrin 23.0 80 0.0027 26.3 4.1 17 209-225 166-182 (202)
25 2con_A RUH-035 protein, NIN on 20.7 37 0.0013 23.6 1.3 34 295-329 29-63 (79)
26 2xzm_6 RPS27E; ribosome, trans 20.3 62 0.0021 22.5 2.3 30 213-263 31-60 (81)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.4e-63 Score=477.04 Aligned_cols=290 Identities=24% Similarity=0.442 Sum_probs=247.0
Q ss_pred CCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHH
Q psy1713 71 RVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELII 150 (397)
Q Consensus 71 ~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~ 150 (397)
..++.+||.|+||||||||+||+|+++|+|+++++..................+++++|+.+|..+|......++|..|+
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence 45678999999999999999999999999999999765443221112222235699999999999998877899999999
Q ss_pred HHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCC--CCCCC----------------CCCCCccccccCeeec
Q psy1713 151 KKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSN--KLDSA----------------SKETTPIYQLFGTYLR 212 (397)
Q Consensus 151 ~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~--~~~~~----------------~~~~~~i~~~F~g~~~ 212 (397)
..++...+.|.+++||||||||.+|||.|++++........ ..+.. ....++|.++|+|++.
T Consensus 84 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 84 TQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEe
Confidence 99999999999999999999999999999999754322110 00000 1135789999999999
Q ss_pred ceEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCC------------------
Q psy1713 213 TEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQ------------------ 274 (397)
Q Consensus 213 ~~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~------------------ 274 (397)
+.++|..|++++.+ +|+| ++|+|+|+.
T Consensus 164 s~~~C~~C~~~s~~-----------------~e~f------------------~~LsL~ip~~~~~~~~~~~~~~~~~~~ 208 (367)
T 2y6e_A 164 STLVCPECAKVSVT-----------------FDPF------------------CYLTLPLPLKKDRVMEGPMLQPQKKKK 208 (367)
T ss_dssp EEEECTTTCCEEEE-----------------EEEE------------------SSEEEECCC------------------
T ss_pred eeEEeCCCCCEeee-----------------EccC------------------eeEEeeCCCCcCCcceeeeeccccccC
Confidence 99999999999999 9999 999998864
Q ss_pred -CCCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeecccCC---CCCCcccccCC-ceeccC
Q psy1713 275 -SSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHG---LKNSRSVQVPL-HLEFGK 349 (397)
Q Consensus 275 -~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~~---~K~~~~v~fp~-~Ldl~~ 349 (397)
..+|++||+.|+.+|.++++++|.|++|++++.+.|+..|.++|+||+|||+||.|+. .|+.+.|.||. .|||.+
T Consensus 209 ~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~ 288 (367)
T 2y6e_A 209 TTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSE 288 (367)
T ss_dssp -CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGG
T ss_pred CCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhh
Confidence 3589999999999999999999999999999999999999999999999999998753 69999999997 799999
Q ss_pred cccccCCCCCcceEEEEEEEeecCCCCCCceEEEEecC-CCCeEEecCC
Q psy1713 350 FMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTS-SGSYHYFDDE 397 (397)
Q Consensus 350 ~~~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~~-~~~W~~fdDs 397 (397)
|+..... ....|+|+|||+|.|. .++|||+||+|.. +++||+|||+
T Consensus 289 ~~~~~~~-~~~~Y~L~avv~H~G~-~~~GHY~a~~~~~~~~~W~~fnD~ 335 (367)
T 2y6e_A 289 FVCNLSA-RPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDS 335 (367)
T ss_dssp GBSCSSS-CCCEEEEEEEEEEECS-SSSCEEEEEEECTTTCCEEEEETT
T ss_pred hccCCCC-CCceEEEEEEeecCCC-CCCCeeeEEEEcCCCCeEEEECCC
Confidence 9876533 3578999999999997 8999999999986 7899999996
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=3.3e-62 Score=472.69 Aligned_cols=291 Identities=27% Similarity=0.424 Sum_probs=246.7
Q ss_pred CCCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHH
Q psy1713 70 GRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELI 149 (397)
Q Consensus 70 ~~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~ 149 (397)
...++++||.|+||||||||+||+|+++|+|+++++..................++++++..++..+|......++|..|
T Consensus 57 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f 136 (396)
T 2gfo_A 57 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDF 136 (396)
T ss_dssp CSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHH
T ss_pred CCCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHH
Confidence 34577899999999999999999999999999999876543221111111123468899999999999887789999999
Q ss_pred HHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCC----CCC--------------CCCCCCccccccCeee
Q psy1713 150 IKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNK----LDS--------------ASKETTPIYQLFGTYL 211 (397)
Q Consensus 150 ~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~----~~~--------------~~~~~~~i~~~F~g~~ 211 (397)
+..++...+.|.+++||||||||.+|||.|++++......... .+. .....++|.++|+|++
T Consensus 137 ~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l 216 (396)
T 2gfo_A 137 KITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQF 216 (396)
T ss_dssp HHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEE
Confidence 9999999999999999999999999999999997543211000 000 0123578999999999
Q ss_pred cceEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCC--CCHHHHHHhcccce
Q psy1713 212 RTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS--SSLDEALGHFFAKE 289 (397)
Q Consensus 212 ~~~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~--~sL~~~L~~~~~~E 289 (397)
++.++|..|++.+.+ +|+| +.|+|+|+.. .+|++||+.|+.+|
T Consensus 217 ~s~i~C~~C~~~s~~-----------------~e~f------------------~~LsL~ip~~~~~sL~~~L~~f~~~E 261 (396)
T 2gfo_A 217 KSTVQCLTCHKKSRT-----------------FEAF------------------MYLSLPLASTSKCTLQDCLRLFSKEE 261 (396)
T ss_dssp EEEEEETTTCCEEEE-----------------EEEE------------------SSEEECCSCSSEEEHHHHHHHHTSCE
T ss_pred EEEEEeCCCCceecc-----------------cccc------------------eeeeecccccccCCHHHHHHHhCCcc
Confidence 999999999999999 9999 9999999864 69999999999999
Q ss_pred eeCCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeecccCC---CCCCcccccCC-ceeccCcccccCCCCCcceEEE
Q psy1713 290 YLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHG---LKNSRSVQVPL-HLEFGKFMHCRMSHSQLKYKLV 365 (397)
Q Consensus 290 ~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~~---~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~Y~L~ 365 (397)
.++|+++|.|++|++++.+.|+..|.++|+||+|||+||.+++ .|+.+.|.||. .|||.+|+..+.. ....|+|+
T Consensus 262 ~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~ 340 (396)
T 2gfo_A 262 KLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKN-NLKKYNLF 340 (396)
T ss_dssp EECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCS-SCCCBEEE
T ss_pred cccCCcccccCCcccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccCCCC-CCceEEEE
Confidence 9999999999999999999999999999999999999998865 59999999995 7999999876432 25689999
Q ss_pred EEEEeecCCCCCCceEEEEecC-CCCeEEecCC
Q psy1713 366 SAVIHHGSSPDSGHYTCIGSTS-SGSYHYFDDE 397 (397)
Q Consensus 366 avv~H~G~~~~~GHY~~~vr~~-~~~W~~fdDs 397 (397)
|||+|.| ++++|||+||+|.. +++||+|||+
T Consensus 341 avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~ 372 (396)
T 2gfo_A 341 SVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDH 372 (396)
T ss_dssp EEEEEES-CTTTCEEEEEEEETTTTEEEEEETT
T ss_pred EEEEecC-CCCCCceEEEEcCCCCCCEEEEeCC
Confidence 9999999 59999999999985 7899999996
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=5.3e-61 Score=457.63 Aligned_cols=288 Identities=26% Similarity=0.441 Sum_probs=246.7
Q ss_pred CCCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHH-hcCCCccChHH
Q psy1713 70 GRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQ-AKSGSAIRPEL 148 (397)
Q Consensus 70 ~~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~~~p~~ 148 (397)
+..++.+||.|+||||||||+||+|+++|+|+++++......... .......+++++|..++..+| ......++|..
T Consensus 4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~--~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~ 81 (348)
T 3nhe_A 4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLH--HGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSE 81 (348)
T ss_dssp --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSC--SSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHH
T ss_pred CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhc--cCCCcccHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 345678999999999999999999999999999998765443221 112234679999999999999 45568999999
Q ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCC------------------CCCCCCccccccCee
Q psy1713 149 IIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDS------------------ASKETTPIYQLFGTY 210 (397)
Q Consensus 149 ~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~------------------~~~~~~~i~~~F~g~ 210 (397)
|+..++...+.|.+++||||||||.+||+.|++++............ .....++|.++|+|+
T Consensus 82 ~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~ 161 (348)
T 3nhe_A 82 FKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQ 161 (348)
T ss_dssp HHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEE
T ss_pred HHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceE
Confidence 99999999999999999999999999999999998653321111000 023457799999999
Q ss_pred ecceEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCC----CCHHHHHHhcc
Q psy1713 211 LRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS----SSLDEALGHFF 286 (397)
Q Consensus 211 ~~~~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~----~sL~~~L~~~~ 286 (397)
+.+.++|..|++.+.+ +++| +.|+|+++.. .+|+++|+.|+
T Consensus 162 ~~~~~~C~~C~~~s~~-----------------~e~f------------------~~LsL~i~~~~~~~~sl~~~L~~~~ 206 (348)
T 3nhe_A 162 LKSSLTCTDCGYCSTV-----------------FDPF------------------WDLSLPIAKRGYPEVTLMDCMRLFT 206 (348)
T ss_dssp EEEEEEETTTCCEEEE-----------------EEEE------------------SSEEECCCSSCSSCEEHHHHHHHHH
T ss_pred EEEEEEcCCCCCEeee-----------------eccc------------------eEEeeeCCCcccCCCCHHHHHHHhc
Confidence 9999999999999999 9999 9999999864 49999999999
Q ss_pred cceeeCCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeecccC---CCCCCcccccC-CceeccCcccccCCCCCcce
Q psy1713 287 AKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYH---GLKNSRSVQVP-LHLEFGKFMHCRMSHSQLKY 362 (397)
Q Consensus 287 ~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~---~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y 362 (397)
.+|.++|+++|.|++|+.++.+.|+..|.++|++|+|||+||.+. ..|+.+.|.|| +.|||.+|+.... ....|
T Consensus 207 ~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~--~~~~Y 284 (348)
T 3nhe_A 207 KEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT--NHAVY 284 (348)
T ss_dssp SCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC--CCCEE
T ss_pred CceEecCCCceECCCCCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCC--CCCcE
Confidence 999999999999999999999999999999999999999999765 47999999999 5799999987653 35789
Q ss_pred EEEEEEEeecCCCCCCceEEEEecC-CCCeEEecCC
Q psy1713 363 KLVSAVIHHGSSPDSGHYTCIGSTS-SGSYHYFDDE 397 (397)
Q Consensus 363 ~L~avv~H~G~~~~~GHY~~~vr~~-~~~W~~fdDs 397 (397)
+|+|||+|.|+ ..+|||+||+|.+ +++||+|||+
T Consensus 285 ~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~~nD~ 319 (348)
T 3nhe_A 285 NLYAVSNHSGT-TMGGHYTAYCRSPGTGEWHTFNDS 319 (348)
T ss_dssp EEEEEEEEEEC-SSCEEEEEEEECTTTCCEEEEETT
T ss_pred EEEEEEEccCC-CCCcccEEEEccCCCCcEEEEeCC
Confidence 99999999995 8999999999984 7899999996
No 4
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=1.1e-59 Score=448.64 Aligned_cols=268 Identities=24% Similarity=0.367 Sum_probs=234.0
Q ss_pred CCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHHH
Q psy1713 72 VPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIK 151 (397)
Q Consensus 72 ~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~~ 151 (397)
.++++||.|+||||||||+||+|+++|+|+++++....... ....++.++|+++|..++... .++.|..|+.
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~-------~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~ 74 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGD-------DSSKSVPLALQRVFYELQHSD-KPVGTKKLTK 74 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTTS-------CTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHH
T ss_pred CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCCC-------cccccHHHHHHHHHHHHhhcC-CCCCCHHHHh
Confidence 46789999999999999999999999999999976532210 112468999999999998754 6789999887
Q ss_pred HHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCcccccccccc
Q psy1713 152 KLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHS 231 (397)
Q Consensus 152 ~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~ 231 (397)
.++ ++.|.+++||||||||.+||+.|++++... ...++|.++|+|++.+.++|..|++.+.+
T Consensus 75 ~~~--~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~-----------~~~s~i~~~F~g~~~~~i~C~~C~~~s~~----- 136 (353)
T 1nb8_A 75 SFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT-----------CVEGTIPKLFRGKMVSYIQCKEVDYRSDR----- 136 (353)
T ss_dssp HHT--CCBTTTTTTSCHHHHHHHHHHHHHHHTTTS-----------TTTTHHHHHHCEEEEEEEEESSSCCEEEE-----
T ss_pred hcC--CCCCCcccchhHHHHHHHHHHHHHHHhcCC-----------CccchhhhhceeEEEEEEEeccCCCeece-----
Confidence 764 467899999999999999999999986421 13468999999999999999999999999
Q ss_pred ccccccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhcccceeeCCCCceecCCCCCcceeEEE
Q psy1713 232 RLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKR 311 (397)
Q Consensus 232 ~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~ 311 (397)
.++| ++|+|+|+...+|+++|+.|+.+|.++|+++|.|+.|+ .+.+.|+
T Consensus 137 ------------~e~f------------------~~LsL~i~~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~ 185 (353)
T 1nb8_A 137 ------------REDY------------------YDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKG 185 (353)
T ss_dssp ------------EEEE------------------SCEEECCTTCSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEE
T ss_pred ------------eeee------------------EEEEEEECCCcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEE
Confidence 9999 99999999999999999999999999999999999996 5678999
Q ss_pred EEeeeCCceEEEEEeecccC-----CCCCCcccccCCceeccCcccccCCCCCcceEEEEEEEeecCCCCCCceEEEEec
Q psy1713 312 FSVDKPPNVLRLQLKRFNYH-----GLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGST 386 (397)
Q Consensus 312 ~~i~~lP~iL~i~l~Rf~~~-----~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~ 386 (397)
..|.++|+||+|||+||.|+ ..|+.+.|.||+.|||.+|+..........|+|+|||+|.|. ..+|||+||+|.
T Consensus 186 ~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~ 264 (353)
T 1nb8_A 186 VKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNP 264 (353)
T ss_dssp EEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEESS-TTCCCEEEEECT
T ss_pred EEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhhhhcccCCCCCceEEEEEEEEEeCC-CCCcEEEEEEec
Confidence 99999999999999999775 369999999999999999998755455689999999999998 899999999996
Q ss_pred -CCCCeEEecCC
Q psy1713 387 -SSGSYHYFDDE 397 (397)
Q Consensus 387 -~~~~W~~fdDs 397 (397)
.+++||+|||+
T Consensus 265 ~~~~~W~~fnD~ 276 (353)
T 1nb8_A 265 KGDGKWCKFDDD 276 (353)
T ss_dssp TSSSCCEEEETT
T ss_pred CCCCCEEEEECc
Confidence 58899999996
No 5
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=3.1e-60 Score=453.53 Aligned_cols=282 Identities=27% Similarity=0.441 Sum_probs=236.1
Q ss_pred CCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCC-CccChHHHHHH
Q psy1713 74 AGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSG-SAIRPELIIKK 152 (397)
Q Consensus 74 ~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~~~p~~~~~~ 152 (397)
+.+||.|+||||||||+||+|+++|+|+++++........ +......+++++|+.+|..+|.... ..++|..|+.+
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~---~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~ 78 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEV---PGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAV 78 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC---------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhc---CCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 5799999999999999999999999999999875433211 1112235699999999999987654 78999999999
Q ss_pred HHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCC---------------------------------CCCC
Q psy1713 153 LKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDS---------------------------------ASKE 199 (397)
Q Consensus 153 l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~---------------------------------~~~~ 199 (397)
++...+.|.+++||||||||.+|||.|++++............ ....
T Consensus 79 l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T 3i3t_A 79 FQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERE 158 (355)
T ss_dssp HHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHC
T ss_pred HHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999997543211100000 0113
Q ss_pred CCccccccCeeecceEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCC-----
Q psy1713 200 TTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQ----- 274 (397)
Q Consensus 200 ~~~i~~~F~g~~~~~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~----- 274 (397)
.++|.++|+|++.+.++|..|++.+.+ .++| ++|+|+++.
T Consensus 159 ~s~i~~~F~g~~~~~~~C~~C~~~s~~-----------------~e~f------------------~~lsl~i~~~~~~~ 203 (355)
T 3i3t_A 159 DSKIVDLFVGQLKSCLKCQACGYRSTT-----------------FEVF------------------CDLSLPIPKKGFAG 203 (355)
T ss_dssp CSHHHHHHCEEEEEEEEETTTCCEEEE-----------------EEEE------------------SSEEECCCC-----
T ss_pred CCcccccccEEEEeeEEeCCCCCCcee-----------------eccc------------------eeecccCCcccccc
Confidence 467999999999999999999999999 9999 999999975
Q ss_pred -CCCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeecccCC---CCCCcccccCC-ceeccC
Q psy1713 275 -SSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHG---LKNSRSVQVPL-HLEFGK 349 (397)
Q Consensus 275 -~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~~---~K~~~~v~fp~-~Ldl~~ 349 (397)
..+|+++|+.|+++|.++++++|.|++|++++.+.|+..|.++|+||+|||+||.+.. .|+...|.||. .|||.+
T Consensus 204 ~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~ 283 (355)
T 3i3t_A 204 GKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGD 283 (355)
T ss_dssp --CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGG
T ss_pred CccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchh
Confidence 3599999999999999999999999999999999999999999999999999997753 59999999995 699999
Q ss_pred cccccCCCCCcceEEEEEEEeecCCCCCCceEEEEecCCCCeEEecCC
Q psy1713 350 FMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397 (397)
Q Consensus 350 ~~~~~~~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~~~~~W~~fdDs 397 (397)
|+.... ....|+|+|||+|.|+ +++|||+||+|. +++||+|||+
T Consensus 284 ~~~~~~--~~~~Y~L~avv~H~G~-~~~GHY~~~~~~-~~~W~~~nD~ 327 (355)
T 3i3t_A 284 FASDKA--GSPVYQLYALCNHSGS-VHYGHYTALCRC-QTGWHVYNDS 327 (355)
T ss_dssp GBC------CCEEEEEEEEEEEEE-TTEEEEEEEEEE-TTEEEEEETT
T ss_pred hccCCC--CCcceEEEEEEEecCC-CCCCeEEEEEEc-CCeEEEEcCC
Confidence 987643 3578999999999995 999999999999 5679999996
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=2.1e-58 Score=448.58 Aligned_cols=284 Identities=23% Similarity=0.312 Sum_probs=234.9
Q ss_pred CCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCccChHHHH
Q psy1713 71 RVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELII 150 (397)
Q Consensus 71 ~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~p~~~~ 150 (397)
....++||.|+||||||||+||+|+++|+|+++|+......... .......+++++|+.+|..++... ..++|..|+
T Consensus 10 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~ 86 (404)
T 2ayn_A 10 AMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRAS--GEMASAQYITAALRDLFDSMDKTS-SSIPPIILL 86 (404)
T ss_dssp -CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC--------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHH
T ss_pred ccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccC--CCCCcccHHHHHHHHHHHHHhcCC-CcCChHHHH
Confidence 35678999999999999999999999999999999765431110 111224679999999999999865 899999999
Q ss_pred HHHHHHhcccc------ccccccHHHHHHHHHHHHHHHHHhcCCCCCC-C-------CCCCCCCCccccccCeeecceEE
Q psy1713 151 KKLKLIARHLE------HHRQEDSHEFLTYLIEGIQKSYLKAIPSSNK-L-------DSASKETTPIYQLFGTYLRTEVT 216 (397)
Q Consensus 151 ~~l~~~~~~f~------~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~-~-------~~~~~~~~~i~~~F~g~~~~~~~ 216 (397)
..++...+.|. +++||||||||.+||+.|++++......... . .......++|.++|+|++.+.++
T Consensus 87 ~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~ 166 (404)
T 2ayn_A 87 QFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMK 166 (404)
T ss_dssp HHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEE
T ss_pred HHHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEE
Confidence 99999999887 5899999999999999999987432210000 0 00012457899999999999999
Q ss_pred eCCCCccc--cccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCC-CCHHHHHHhcccceeeCC
Q psy1713 217 CNSCSHIS--TQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS-SSLDEALGHFFAKEYLGG 293 (397)
Q Consensus 217 C~~C~~~s--~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~-~sL~~~L~~~~~~E~l~~ 293 (397)
|..|++.+ .+ +|+| ++|+|+|+.. .+|+++|+.++. |.++
T Consensus 167 C~~C~~~s~s~~-----------------~e~f------------------~~Lsl~i~~~~~~l~~~L~~~~~-e~l~- 209 (404)
T 2ayn_A 167 CTESEEEEVTKG-----------------KENQ------------------LQLSCFINQEVKYLFTGLKLRLQ-EEIT- 209 (404)
T ss_dssp ESSSCCCCCBCC-----------------EEEE------------------SSEEEECSSSCCBHHHHHHHTTE-ECCC-
T ss_pred ecCCCCccCcee-----------------eccC------------------ceEEeecCCCcccHHHHHHHhcc-ccee-
Confidence 99999995 67 9999 9999999875 689999999987 5565
Q ss_pred CCceecCCCCCcceeEEEEEeeeCCceEEEEEeecccC-----CCCCCcccccCCceeccCcccccC-------------
Q psy1713 294 DNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYH-----GLKNSRSVQVPLHLEFGKFMHCRM------------- 355 (397)
Q Consensus 294 ~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~-----~~K~~~~v~fp~~Ldl~~~~~~~~------------- 355 (397)
+.|++|++.+.+.|+..|.++|+||+|||+||.|+ ..|+.+.|.||..|||.+|+....
T Consensus 210 ---~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~ 286 (404)
T 2ayn_A 210 ---KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKD 286 (404)
T ss_dssp ---CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTC
T ss_pred ---ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhh
Confidence 89999999999999999999999999999999875 379999999999999999986420
Q ss_pred -----------------------------------CCCCcceEEEEEEEeecCCCCCCceEEEEecCCCCeEEecCC
Q psy1713 356 -----------------------------------SHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397 (397)
Q Consensus 356 -----------------------------------~~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~~~~~W~~fdDs 397 (397)
......|+|+|||+|.|.++++|||+||||..+++||+|||+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~ 363 (404)
T 2ayn_A 287 LEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDD 363 (404)
T ss_dssp TTC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTT
T ss_pred hhcccchhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecc
Confidence 123478999999999997799999999999888899999996
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=4.1e-57 Score=448.06 Aligned_cols=287 Identities=30% Similarity=0.511 Sum_probs=240.4
Q ss_pred CCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCC---------
Q psy1713 71 RVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSG--------- 141 (397)
Q Consensus 71 ~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~--------- 141 (397)
..++.+||.|+||||||||+||+|+++|+|+++++...... .+. ......++.++|.+++.+++....
T Consensus 137 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~-~~~--~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~ 213 (476)
T 3mhs_A 137 RRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSN-NCK--VRSPDKCFSCALDKIVHELYGALNTKQASSSST 213 (476)
T ss_dssp GTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHH-HCS--SCCTTTCHHHHHHHHHHHHHSCCCC--------
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhh-hcc--CCCcccchHHHHHHHHHHHhhcccccccccccc
Confidence 45788999999999999999999999999999998654332 111 122236799999999999986432
Q ss_pred CccChHHHHHHHH---HHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCC--CCCCCCCCCccccccCeeecceEE
Q psy1713 142 SAIRPELIIKKLK---LIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNK--LDSASKETTPIYQLFGTYLRTEVT 216 (397)
Q Consensus 142 ~~~~p~~~~~~l~---~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~--~~~~~~~~~~i~~~F~g~~~~~~~ 216 (397)
..+.|..++..+. ...+.|.+++||||||||.+||+.|++++......... ........++|.++|+|.+.+.++
T Consensus 214 ~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~ 293 (476)
T 3mhs_A 214 STNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIV 293 (476)
T ss_dssp CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEE
T ss_pred cccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEE
Confidence 2566777666655 67889999999999999999999999998765432211 111223467899999999999999
Q ss_pred eCCCCccc-cccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhcccceeeCCCC
Q psy1713 217 CNSCSHIS-TQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDN 295 (397)
Q Consensus 217 C~~C~~~s-~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~~~~E~l~~~~ 295 (397)
|..|++++ .+ .++| ++|+|+++...+|+++|+.|+.+|.+++.+
T Consensus 294 C~~C~~~s~~~-----------------~e~f------------------~~LsL~i~~~~sl~~~L~~~~~~E~l~~~~ 338 (476)
T 3mhs_A 294 CPGCQNNSKTT-----------------IDPF------------------LDLSLDIKDKKKLYECLDSFHKKEQLKDFN 338 (476)
T ss_dssp CTTTCCCCEEE-----------------EEEE------------------SCEEECCTTCCBHHHHHHHHHCCEECSSCC
T ss_pred ECCCCCeeCCc-----------------ccch------------------hhhccchhhhhHHHHHHHHhcChhhccCCC
Confidence 99999996 55 8999 999999999999999999999999998644
Q ss_pred ceecCCCCCcceeEEEEEeeeCCceEEEEEeecccC----CCCCCcccccCCceeccCcccccCC--------CCCcceE
Q psy1713 296 LYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYH----GLKNSRSVQVPLHLEFGKFMHCRMS--------HSQLKYK 363 (397)
Q Consensus 296 ~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~----~~K~~~~v~fp~~Ldl~~~~~~~~~--------~~~~~Y~ 363 (397)
|.|++|+.++.+.|+..|.++|+||+|||+||.+. ..|+.+.|.||+.|||.+|+..... .....|+
T Consensus 339 -~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~ 417 (476)
T 3mhs_A 339 -YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYE 417 (476)
T ss_dssp -CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEE
T ss_pred -CcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEE
Confidence 99999999999999999999999999999999754 3599999999999999999876432 3457899
Q ss_pred EEEEEEeecCCCCCCceEEEEecCCCCeEEecCC
Q psy1713 364 LVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397 (397)
Q Consensus 364 L~avv~H~G~~~~~GHY~~~vr~~~~~W~~fdDs 397 (397)
|+|||+|.|+ .++|||+||+|..+++||+|||+
T Consensus 418 L~avv~H~G~-~~~GHY~a~vr~~~~~W~~fnD~ 450 (476)
T 3mhs_A 418 LIGIVSHKGT-VNEGHYIAFCKISGGQWFKFNDS 450 (476)
T ss_dssp EEEEEEEEEC-SSSEEEEEEEECTTSCEEEEETT
T ss_pred EEEEEEeCCC-CCCCceEEEEECCCCcEEEEeCC
Confidence 9999999996 99999999999888999999996
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=1.8e-57 Score=443.13 Aligned_cols=271 Identities=20% Similarity=0.300 Sum_probs=225.8
Q ss_pred CCCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCC---CcchhHHHHHHHHHHHHHhcCCCccCh
Q psy1713 70 GRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSG---YQFECLVCAMRKTLAHCQAKSGSAIRP 146 (397)
Q Consensus 70 ~~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~---~~~~~l~~~l~~l~~~~~~~~~~~~~p 146 (397)
+..+.++||.|+||||||||+||+|+++|+|+++|+...... ....... ....+++++|+++|..++......++|
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p 97 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQ-GVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLP 97 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGG-CCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECC
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhccccc-ccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCH
Confidence 355678999999999999999999999999999999865432 1110100 013579999999999999877789999
Q ss_pred HHHHHHHHHHhcccc-------ccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCC
Q psy1713 147 ELIIKKLKLIARHLE-------HHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNS 219 (397)
Q Consensus 147 ~~~~~~l~~~~~~f~-------~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~ 219 (397)
..|+..++...+.|. +++||||||||.+||+.|++++.. ++|.++|+ .+.+.++|..
T Consensus 98 ~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------~~i~~~F~-~~~~~~~C~~ 161 (415)
T 1vjv_A 98 VVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------KFSEDFRI-QFKTTIKDTA 161 (415)
T ss_dssp HHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------HHHTTTCE-EEEEEEEETT
T ss_pred HHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc---------------chHHHHHH-hheEEEEECC
Confidence 999999999999998 899999999999999999999732 57889999 9999999999
Q ss_pred CCccc--cccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCC-CCHHHHHHhcccceeeCCCCc
Q psy1713 220 CSHIS--TQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS-SSLDEALGHFFAKEYLGGDNL 296 (397)
Q Consensus 220 C~~~s--~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~-~sL~~~L~~~~~~E~l~~~~~ 296 (397)
|++.+ .+ .|+| ++|+|+|+.. .+|+++|+.++.+ .++
T Consensus 162 C~~~s~s~~-----------------~e~f------------------~~Lsl~i~~~~~~l~~~L~~~~~e-~i~---- 201 (415)
T 1vjv_A 162 NDNDITVKE-----------------NESD------------------SKLQCHISGTTNFMRNGLLEGLNE-KIE---- 201 (415)
T ss_dssp EEEEEEEEC-----------------CCEE------------------SCEEECCCTTCCBHHHHHHHHHEE-C------
T ss_pred CCCCccccc-----------------cccc------------------eeeeeccccccchHHHHHHHHhhh-hhh----
Confidence 99997 47 9999 9999999875 5899999999874 455
Q ss_pred eecCCCCCcceeEEEEEeeeCCceEEEEEeecccCC-----CCCCcccccCCceeccCcccccC----------------
Q psy1713 297 YRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHG-----LKNSRSVQVPLHLEFGKFMHCRM---------------- 355 (397)
Q Consensus 297 ~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~~-----~K~~~~v~fp~~Ldl~~~~~~~~---------------- 355 (397)
+.|+.|++.+.+.|+..|.++|+||+|||+||.|+. .|+.+.|.||..|||.+|+....
T Consensus 202 ~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~ 281 (415)
T 1vjv_A 202 KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEK 281 (415)
T ss_dssp -------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhh
Confidence 899999999999999999999999999999997753 69999999999999999875310
Q ss_pred ----------------------------------------------------------CCCCcceEEEEEEEeecCCCCC
Q psy1713 356 ----------------------------------------------------------SHSQLKYKLVSAVIHHGSSPDS 377 (397)
Q Consensus 356 ----------------------------------------------------------~~~~~~Y~L~avv~H~G~~~~~ 377 (397)
......|+|+|||+|.|.++.+
T Consensus 282 ~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~ 361 (415)
T 1vjv_A 282 EKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSES 361 (415)
T ss_dssp HHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTS
T ss_pred hhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCC
Confidence 1234789999999999976999
Q ss_pred CceEEEEec--CCCCeEEecCC
Q psy1713 378 GHYTCIGST--SSGSYHYFDDE 397 (397)
Q Consensus 378 GHY~~~vr~--~~~~W~~fdDs 397 (397)
|||+||||. .+++||+|||+
T Consensus 362 GHY~a~vr~~~~~~~W~~fnD~ 383 (415)
T 1vjv_A 362 GHYQAFIRDELDENKWYKFNDD 383 (415)
T ss_dssp SEEEEEEECSSCTTCEEEEETT
T ss_pred CCEEEEEeCCCCCCcEEEeECC
Confidence 999999998 68899999996
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-56 Score=448.10 Aligned_cols=274 Identities=23% Similarity=0.382 Sum_probs=235.2
Q ss_pred CCCCC-CCCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhcCCCcc
Q psy1713 66 LGWQG-RVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAI 144 (397)
Q Consensus 66 ~~~~~-~~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 144 (397)
..|+. ..++++||.|+||||||||+||+|+++|+|+++++....... ....++.++|+++|..|+... .++
T Consensus 165 ~~~~~~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~-------~~~~~~~~~l~~lf~~l~~~~-~~~ 236 (522)
T 2f1z_A 165 VAWDSKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGD-------DSSKSVPLALQRVFYELQHSD-KPV 236 (522)
T ss_dssp SCCCTTTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCSS-------CTTTCHHHHHHHHHHHHHHCS-SCB
T ss_pred ccCCccccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccCC-------cccchHHHHHHHHHHHHhcCC-Ccc
Confidence 34543 346779999999999999999999999999999976532210 112458999999999998754 678
Q ss_pred ChHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccc
Q psy1713 145 RPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHIS 224 (397)
Q Consensus 145 ~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s 224 (397)
.|..|+..++ ++.|.+++||||||||.+||+.|++++... ...++|.++|+|++.+.++|..|++.+
T Consensus 237 ~~~~l~~~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-----------~~~s~i~~lF~G~~~s~i~C~~C~~~s 303 (522)
T 2f1z_A 237 GTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT-----------CVEGTIPKLFRGKMVSYIQCKEVDYRS 303 (522)
T ss_dssp CCTTHHHHTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS-----------TTTTHHHHHHCEEEEEEECCSSSCCCC
T ss_pred CcHHHHhhcC--CccCCCcccccHHHHHHHHHHHHHhhccCC-----------ccccchhhheeEEEEEEEEcCCCCcee
Confidence 8888877654 367889999999999999999999987432 134689999999999999999999999
Q ss_pred cccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHhcccceeeCCCCceecCCCCC
Q psy1713 225 TQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGR 304 (397)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~ 304 (397)
.+ .++| ++|+|+|+...+|+++|+.|+.+|.++|+++|.|+.|+
T Consensus 304 ~~-----------------~e~f------------------~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~- 347 (522)
T 2f1z_A 304 DR-----------------REDY------------------YDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG- 347 (522)
T ss_dssp CE-----------------EEEE------------------SCEEECCTTCCBHHHHHHHHTCEEEECTTSCBCCGGGC-
T ss_pred ee-----------------eeee------------------EEEEEEeCCcccchHHHHHhhceeecCCcceeecCcCC-
Confidence 99 9999 99999999999999999999999999999999999996
Q ss_pred cceeEEEEEeeeCCceEEEEEeecccCC-----CCCCcccccCCceeccCcccccCCCCCcceEEEEEEEeecCCCCCCc
Q psy1713 305 KVEATKRFSVDKPPNVLRLQLKRFNYHG-----LKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGH 379 (397)
Q Consensus 305 ~~~~~k~~~i~~lP~iL~i~l~Rf~~~~-----~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~~GH 379 (397)
.+.+.|+..|.++|+||+|||+||.|+. .|+.+.|.||+.|||.+|+..........|+|+|||+|.|. ..+||
T Consensus 348 ~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GH 426 (522)
T 2f1z_A 348 LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGH 426 (522)
T ss_dssp SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEECS-SSCSE
T ss_pred ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchhhhccccCCCCcEEEEEEEEEeccc-CCCce
Confidence 5688999999999999999999997753 59999999999999999998754455689999999999998 89999
Q ss_pred eEEEEec-CCCCeEEecCC
Q psy1713 380 YTCIGST-SSGSYHYFDDE 397 (397)
Q Consensus 380 Y~~~vr~-~~~~W~~fdDs 397 (397)
|+||+|. .+++||+|||+
T Consensus 427 Y~a~v~~~~~~~W~~fnD~ 445 (522)
T 2f1z_A 427 YVVYLNPKGDGKWCKFDDD 445 (522)
T ss_dssp EEEEECTTSSSCCEEEETT
T ss_pred EEEEEecCCCCCEEEEECc
Confidence 9999996 58899999996
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.7e-55 Score=453.78 Aligned_cols=227 Identities=19% Similarity=0.289 Sum_probs=198.5
Q ss_pred CCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHHHHHHHHHHhc------------
Q psy1713 72 VPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAK------------ 139 (397)
Q Consensus 72 ~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~------------ 139 (397)
.++.+||.|+||||||||+||+|+++|+|+++++....... .........+++++|++++..++..
T Consensus 341 ~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~--~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~ 418 (854)
T 3ihp_A 341 GPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIF--QNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDG 418 (854)
T ss_dssp STTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHH--HHCCSCGGGCHHHHHHHHHHHHHSCC-----------
T ss_pred CCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhh--ccccCCccccHHHHHHHHHHHHhcccccccccccccc
Confidence 46789999999999999999999999999999985432211 1122223467999999999999863
Q ss_pred --------CCCccChHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCeee
Q psy1713 140 --------SGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYL 211 (397)
Q Consensus 140 --------~~~~~~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~i~~~F~g~~ 211 (397)
....++|..|+..++...+.|.+++||||||||.+||+.|++++. ..+.+.++|+|.+
T Consensus 419 ~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~--------------~~s~i~~lF~G~l 484 (854)
T 3ihp_A 419 ERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCR--------------SSENPNEVFRFLV 484 (854)
T ss_dssp ----------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCT--------------TSCCGGGGTCEEE
T ss_pred ccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhc--------------ccCCchhhcCceE
Confidence 235899999999999999999999999999999999999999862 2367899999999
Q ss_pred cceEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCC----------------
Q psy1713 212 RTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS---------------- 275 (397)
Q Consensus 212 ~~~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~---------------- 275 (397)
+++++|..|++++.+ .++| +.|+|+|+..
T Consensus 485 ~s~i~C~~C~~vs~t-----------------~e~F------------------~~LsL~Ip~~~~~~~~~~~~~~~~~~ 529 (854)
T 3ihp_A 485 EEKIKCLATEKVKYT-----------------QRVD------------------YIMQLPVPMDAALNKEELLEYEEKKR 529 (854)
T ss_dssp EEEEEETTTTEEEEE-----------------EEEE------------------SEEEECCCGGGCTTHHHHHHHHHHHH
T ss_pred EEEEEecCCCCEeEE-----------------eeec------------------eEEEeeCCccccccccchhhhccccc
Confidence 999999999999999 9999 9999998742
Q ss_pred ----------------CCHHHHHHhcccceeeCCCCceecCCCCCcceeEEEEEeeeCCceEEEEEeecccC----CCCC
Q psy1713 276 ----------------SSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYH----GLKN 335 (397)
Q Consensus 276 ----------------~sL~~~L~~~~~~E~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~Rf~~~----~~K~ 335 (397)
.+|++||+.|+.+|.+++ |.|++|+.++.+.|+..|.++|+||+|||+||.++ ..|+
T Consensus 530 ~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki 606 (854)
T 3ihp_A 530 QAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKL 606 (854)
T ss_dssp HHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEEC
T ss_pred ccccccccccccccCCCCHHHHHHHhcCceEeee---eeccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEEC
Confidence 599999999999999986 99999999999999999999999999999999763 3699
Q ss_pred CcccccCCceeccCccc
Q psy1713 336 SRSVQVPLHLEFGKFMH 352 (397)
Q Consensus 336 ~~~v~fp~~Ldl~~~~~ 352 (397)
.+.|.||+.|||.+|+.
T Consensus 607 ~~~V~FP~~LDl~~y~~ 623 (854)
T 3ihp_A 607 DVSIEMPEELDISQLRG 623 (854)
T ss_dssp CEECCCCSEEECGGGBC
T ss_pred CeEEecCCcEehHHhcc
Confidence 99999999999998865
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.98 E-value=1.2e-32 Score=253.10 Aligned_cols=225 Identities=19% Similarity=0.295 Sum_probs=152.6
Q ss_pred CCCCCCcccCCCcchHHHHHHHhhCcHHHHHHHhccccccccccccCCCcchhHHHHH-HHHHHHHHhcCCCccChHHHH
Q psy1713 72 VPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAM-RKTLAHCQAKSGSAIRPELII 150 (397)
Q Consensus 72 ~~~~~GL~N~GNtCy~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~l~~~~~~~~~~~~~p~~~~ 150 (397)
...++||.|+||||||||.||+|+++|++.+.|+........ ......+...| +.++..|.. ..+.|..++
T Consensus 6 ~g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~-----~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l 77 (374)
T 2vhf_A 6 IGKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND-----VEYYSETQELLRTEIVNPLRI---YGYVCATKI 77 (374)
T ss_dssp SEESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS-----CTTHHHHHHHHHHTTHHHHHH---TSEECHHHH
T ss_pred cCCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc-----chhHHHHHHHHHHHHHHHHhh---cCCCcHHHH
Confidence 345799999999999999999999999999999977433211 11112377788 777777765 789999999
Q ss_pred HHHHHHhcccc-----ccccccHHHHHHHHHHHHHHH-HHhcCCCCCCCCCCCCCCCccccccCeeecceEEeCCCCccc
Q psy1713 151 KKLKLIARHLE-----HHRQEDSHEFLTYLIEGIQKS-YLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHIS 224 (397)
Q Consensus 151 ~~l~~~~~~f~-----~~~QqDA~Efl~~ll~~L~~e-~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s 224 (397)
..|+...++|. +++||||+|||+.||..|... ..-...+ ... ....+.+.++|.
T Consensus 78 ~~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s---~~~-~~~~~~~~q~f~---------------- 137 (374)
T 2vhf_A 78 MKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRS---AGQ-KVQDCYFYQIFM---------------- 137 (374)
T ss_dssp HHHHHHHHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEE---TTC-CCEEESCEECCC----------------
T ss_pred HHHHHHhHHHhcccCCCccccCHHHHHHHHHHHHhhccccccccc---ccc-cccccHHHHHhc----------------
Confidence 99999999884 489999999999999988753 1100000 000 000112233332
Q ss_pred cccccccccccccCCCCccccccccccccccccCCCCCccceeeeecCCCCCCHHHHHHh-cccceeeCCCCceecCCCC
Q psy1713 225 TQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGH-FFAKEYLGGDNLYRCEKCG 303 (397)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~~~~~l~l~i~~~~sL~~~L~~-~~~~E~l~~~~~~~C~~C~ 303 (397)
.. .+. . ...+...+++. |+.. |
T Consensus 138 E~-----------------~e~---------------------~-----~~e~~~qL~e~nfl~~----g---------- 160 (374)
T 2vhf_A 138 EK-----------------NEK---------------------V-----GVPTIQQLLEWSFINS----N---------- 160 (374)
T ss_dssp CC-----------------C-----------------------C-----CCCBHHHHHHHHHHHH----T----------
T ss_pred Cc-----------------ccc---------------------c-----CCcHHHHhhhHHHHHc----C----------
Confidence 00 000 0 01233444332 2221 1
Q ss_pred CcceeEEEEEeeeCCceEEEEEeecccCCCCCCcccccCCceeccCcccccC----------------------------
Q psy1713 304 RKVEATKRFSVDKPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKFMHCRM---------------------------- 355 (397)
Q Consensus 304 ~~~~~~k~~~i~~lP~iL~i~l~Rf~~~~~K~~~~v~fp~~Ldl~~~~~~~~---------------------------- 355 (397)
+.|.++|+||+||+.||. ...|+-++|.||.+||+.+++.++.
T Consensus 161 --------ikisrLP~yLtVq~vRFg-KkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~ 231 (374)
T 2vhf_A 161 --------LKFAEAPSCLIIQMPRFG-KDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKI 231 (374)
T ss_dssp --------EEESSCCSEEEEECCCCS-SSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSC
T ss_pred --------CeeecCCcceEEeeeccC-ccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhcccccc
Confidence 128899999999999993 5679999999999999987654310
Q ss_pred ------------------C---------------------CCCcceEEEEEEEeecCCCCCCceEEEEec--CCCCeEEe
Q psy1713 356 ------------------S---------------------HSQLKYKLVSAVIHHGSSPDSGHYTCIGST--SSGSYHYF 394 (397)
Q Consensus 356 ------------------~---------------------~~~~~Y~L~avv~H~G~~~~~GHY~~~vr~--~~~~W~~f 394 (397)
. .....|+|.|||+ .++|||+||||. .+++|+.|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~F 306 (374)
T 2vhf_A 232 KQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFF 306 (374)
T ss_dssp CEECHHHHHHHTTSGGGTTCCCEECCC----------------CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEE
T ss_pred ccccchhhhhhhhhhhhhcccccccccCccccccccccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEE
Confidence 0 1126899999999 678999999997 48899999
Q ss_pred c
Q psy1713 395 D 395 (397)
Q Consensus 395 d 395 (397)
|
T Consensus 307 D 307 (374)
T 2vhf_A 307 D 307 (374)
T ss_dssp E
T ss_pred e
Confidence 8
No 12
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=96.88 E-value=0.035 Score=50.11 Aligned_cols=30 Identities=13% Similarity=0.000 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHhccccccccccHHHHHHHH
Q psy1713 145 RPELIIKKLKLIARHLEHHRQEDSHEFLTYL 175 (397)
Q Consensus 145 ~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~l 175 (397)
+|..|...+-.... ...|+-.||+++|..|
T Consensus 144 d~~~FVa~~Ya~~~-~~~G~~gDa~~~L~~L 173 (315)
T 2fe8_A 144 DAANFCALILAYSN-KTVGELGDVRETMTHL 173 (315)
T ss_dssp CCHHHHHHHHHHTT-CCTTSCCCHHHHHHHH
T ss_pred ChHHHHHHHHHhcC-CCCCCCccHHHHHHHH
Confidence 46777776655533 4578889999999888
No 13
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=96.74 E-value=0.01 Score=50.20 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=23.4
Q ss_pred cChHHHHHHHHHHhccccccccccHHHHHHHHH
Q psy1713 144 IRPELIIKKLKLIARHLEHHRQEDSHEFLTYLI 176 (397)
Q Consensus 144 ~~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~ll 176 (397)
-+|..|...+-.+. ....|+--||+++|..|+
T Consensus 49 Gd~~~fV~~~Ya~~-~~~~G~~gDa~~~L~~Ll 80 (211)
T 3mp2_A 49 GDVMDFVNLCYAAT-TLARGHSGDAEYLLELML 80 (211)
T ss_dssp TCCHHHHHHHHHHH-TCCTTSCCCHHHHHHHHH
T ss_pred CChHHHHHHHHHHc-CCCCCCCcCHHHHHHHHH
Confidence 35666766665543 456788999999999987
No 14
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=87.51 E-value=0.28 Score=38.17 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=23.9
Q ss_pred CCCCcccCCCcchHHHHHHHhhCcH-HHHHHHh
Q psy1713 74 AGAGLVNAINTCYLNSCLQALFHIP-SFHNWLL 105 (397)
Q Consensus 74 ~~~GL~N~GNtCy~NSvLQ~L~~~p-~f~~~l~ 105 (397)
...|+.|..++||+|++||+...+. +|.++..
T Consensus 12 ~fys~pN~hdncWLNtilQLfryvdepfFd~~y 44 (167)
T 1qmy_A 12 TFYSRPNNHDNAWLNAILQLFRYVEEPFFDWVY 44 (167)
T ss_dssp ECCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHH
T ss_pred ccccCCCCCcchHHHHHHHHHHHcCccchhhcc
Confidence 3578999999999999999886543 3444443
No 15
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=58.69 E-value=6.5 Score=32.60 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=21.9
Q ss_pred EEEEEEeecCCCCCCceEEEEecCCCCeEEec
Q psy1713 364 LVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFD 395 (397)
Q Consensus 364 L~avv~H~G~~~~~GHY~~~vr~~~~~W~~fd 395 (397)
..|+|++.. -|++|.+|- +|.||-+|
T Consensus 110 ~~~FI~N~~-----~HWfaiRki-gg~WyNLd 135 (191)
T 3o65_A 110 ERSFICNYK-----QHWFTIRKF-GKHWFNLN 135 (191)
T ss_dssp CCEEEEEES-----SCEEEEEEE-TTEEEECC
T ss_pred hhhhhhccc-----cceeeEEec-CCEEEEcc
Confidence 457888875 599999998 78999987
No 16
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=54.09 E-value=5.2 Score=21.28 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=11.8
Q ss_pred EEEEecCCCCeEEecC
Q psy1713 381 TCIGSTSSGSYHYFDD 396 (397)
Q Consensus 381 ~~~vr~~~~~W~~fdD 396 (397)
.+|||. +|.|...++
T Consensus 11 ~~Yvr~-dg~WV~l~t 25 (27)
T 2ww6_A 11 QAYVRK-FGEWVLLST 25 (27)
T ss_dssp CEEEEE-TTEEEEGGG
T ss_pred ceeEEE-cCeEEEccc
Confidence 378998 889998764
No 17
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=44.31 E-value=26 Score=27.35 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=13.3
Q ss_pred eecceEEeCCCCccccc
Q psy1713 210 YLRTEVTCNSCSHISTQ 226 (397)
Q Consensus 210 ~~~~~~~C~~C~~~s~~ 226 (397)
...-...|..||+....
T Consensus 66 ~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp EECCEEEETTTCCEEEG
T ss_pred ecCCcEECCCCCCEEec
Confidence 55667899999998654
No 18
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=28.87 E-value=1e+02 Score=22.96 Aligned_cols=17 Identities=29% Similarity=0.688 Sum_probs=12.5
Q ss_pred eecceEEeCCCCccccc
Q psy1713 210 YLRTEVTCNSCSHISTQ 226 (397)
Q Consensus 210 ~~~~~~~C~~C~~~s~~ 226 (397)
...-...|..|++....
T Consensus 69 ~~p~~~~C~~CG~~~e~ 85 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKP 85 (119)
T ss_dssp EECCEEECSSSSCEECS
T ss_pred eccceEEcCCCCCEEeC
Confidence 44556789999998654
No 19
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=28.17 E-value=36 Score=22.65 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=20.8
Q ss_pred ceEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCc
Q psy1713 213 TEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHI 263 (397)
Q Consensus 213 ~~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~ 263 (397)
-.++|+.|+++... |..- .....|..|+..
T Consensus 6 m~VKCp~C~niq~V-----------------FShA----~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 6 VKVKCPDCEHEQVI-----------------FDHP----STIVKCIICGRT 35 (66)
T ss_dssp EEEECTTTCCEEEE-----------------ESSC----SSCEECSSSCCE
T ss_pred EEEECCCCCCceEE-----------------EecC----ceEEEcccCCCE
Confidence 35789999998877 4433 345678888665
No 20
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.26 E-value=40 Score=22.24 Aligned_cols=13 Identities=23% Similarity=0.554 Sum_probs=11.0
Q ss_pred eEEeCCCCccccc
Q psy1713 214 EVTCNSCSHISTQ 226 (397)
Q Consensus 214 ~~~C~~C~~~s~~ 226 (397)
.++|+.|+++...
T Consensus 15 ~VkCp~C~~~q~V 27 (63)
T 3j20_W 15 RVKCIDCGNEQIV 27 (63)
T ss_dssp EEECSSSCCEEEE
T ss_pred EEECCCCCCeeEE
Confidence 5789999998777
No 21
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=24.41 E-value=30 Score=18.81 Aligned_cols=11 Identities=45% Similarity=0.561 Sum_probs=4.5
Q ss_pred ccccCcccccc
Q psy1713 3 DIHSNINSICS 13 (397)
Q Consensus 3 ~~~s~~~s~~~ 13 (397)
||...|+|++|
T Consensus 13 distssssiss 23 (35)
T 2lic_A 13 DISTSSSSISS 23 (35)
T ss_dssp SSCSCSSCCST
T ss_pred ccccccccccc
Confidence 34444444433
No 22
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=24.38 E-value=54 Score=22.84 Aligned_cols=29 Identities=45% Similarity=0.888 Sum_probs=21.0
Q ss_pred eEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCc
Q psy1713 214 EVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHI 263 (397)
Q Consensus 214 ~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~ 263 (397)
.++|..|+++... |..- ...+.|..|+.+
T Consensus 34 ~VkCp~C~~~q~V-----------------FSha----~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 34 DVKCPGCLNITTV-----------------FSHA----QTAVTCESCSTI 62 (82)
T ss_dssp EEECTTSCSCEEE-----------------ESBC----SSCCCCSSSCCC
T ss_pred EEECCCCCCeeEE-----------------EecC----CeEEEccccCCE
Confidence 5799999999877 4443 345678888765
No 23
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=23.28 E-value=45 Score=20.50 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=18.8
Q ss_pred eEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCc
Q psy1713 214 EVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHI 263 (397)
Q Consensus 214 ~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~ 263 (397)
...|..||.+-.. -...+...+.|..|+..
T Consensus 3 iY~C~rCg~~fs~--------------------~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 3 VYRCGKCWKTFTD--------------------EQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp --CCCCTTTTCCC--------------------CCSCCCSSSCCTTTCCS
T ss_pred EEEeeccCCCccH--------------------HHHhhCCCcccCccCcE
Confidence 3578899887433 22345577888888764
No 24
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=23.04 E-value=80 Score=26.25 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=11.8
Q ss_pred eeecceEEeCCCCcccc
Q psy1713 209 TYLRTEVTCNSCSHIST 225 (397)
Q Consensus 209 g~~~~~~~C~~C~~~s~ 225 (397)
|.-...-+|..||++..
T Consensus 166 ~~~~~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 166 PDDDKFHLCPICGYIHK 182 (202)
T ss_dssp CCSCCEEECSSSCCEEE
T ss_pred CCCCcEEEECCCCCEEc
Confidence 33345678999999854
No 25
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=20.73 E-value=37 Score=23.59 Aligned_cols=34 Identities=18% Similarity=0.396 Sum_probs=20.3
Q ss_pred CceecCCCCCcceeEEEEEeeeCCceEEEEEe-ecc
Q psy1713 295 NLYRCEKCGRKVEATKRFSVDKPPNVLRLQLK-RFN 329 (397)
Q Consensus 295 ~~~~C~~C~~~~~~~k~~~i~~lP~iL~i~l~-Rf~ 329 (397)
.+..|++||..+...-...+.+- --+.+||+ +|.
T Consensus 29 ~k~FCp~CGn~TL~Rvsvsvd~~-G~~~~hl~~n~~ 63 (79)
T 2con_A 29 NRVFCGHCGNKTLKKVSVTINDD-GTLHMHFSRNPK 63 (79)
T ss_dssp SCCSCSSSCCSCCEEEECBCCSS-CCCBCCCCCCCC
T ss_pred ccccccccCcccceEEEEEECCC-CcEEEeccCCcc
Confidence 35889999997544433333333 45567775 344
No 26
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=20.34 E-value=62 Score=22.50 Aligned_cols=30 Identities=27% Similarity=0.738 Sum_probs=21.4
Q ss_pred ceEEeCCCCccccccccccccccccCCCCccccccccccccccccCCCCCc
Q psy1713 213 TEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHI 263 (397)
Q Consensus 213 ~~~~C~~C~~~s~~~~~~~~~~~~~~~~~~~~e~f~~~~~~~~~c~~c~~~ 263 (397)
-.++|..|+++... |..- ...+.|..|+.+
T Consensus 31 m~VkCp~C~n~q~V-----------------FShA----~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 31 MDVKCAQCQNIQMI-----------------FSNA----QSTIICEKCSAI 60 (81)
T ss_dssp EEEECSSSCCEEEE-----------------ETTC----SSCEECSSSCCE
T ss_pred EEeECCCCCCeeEE-----------------EecC----ccEEEccCCCCE
Confidence 46799999999877 5432 345678888765
Done!