RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1713
(397 letters)
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 249 bits (638), Expect = 1e-80
Identities = 118/323 (36%), Positives = 174/323 (53%), Gaps = 42/323 (13%)
Query: 75 GAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLA 134
GAGL N NTC+LNS LQ L H P N+LL+ EH C + C++CA+ +
Sbjct: 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLS-REHSKDC----CNEGFCMMCALEAHVE 55
Query: 135 HCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLD 194
A SG P + LK I++H RQED+HEFL YL++ +QK+ L +D
Sbjct: 56 RALASSGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVD 115
Query: 195 SASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTE 254
+S+ETT + Q+FG YLR++V C +C H+S Y F
Sbjct: 116 PSSQETTLVQQIFGGYLRSQVKCLNCKHVSNT-----------------YDPF------- 151
Query: 255 VTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSV 314
L+LSLDI+ + SL++AL F E L G+N Y+CE+C +KV+A+K+ ++
Sbjct: 152 -----------LDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTI 200
Query: 315 DKPPNVLRLQLKRFNYH-GLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGS 373
+ PNVL + LKRF+ G K ++ + P L+ +M + + LKYKL + ++H G
Sbjct: 201 HRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMS-QPNDGPLKYKLYAVLVHSGF 259
Query: 374 SPDSGHYTCIGSTSSGSYHYFDD 396
SP SGHY C +S+G ++ DD
Sbjct: 260 SPHSGHYYCYVKSSNGKWYNMDD 282
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 177 bits (452), Expect = 8e-53
Identities = 92/332 (27%), Positives = 138/332 (41%), Gaps = 52/332 (15%)
Query: 76 AGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAH 135
GL N NTCY+NS LQALF IP ++LL + + + S Q L A+
Sbjct: 4 TGLANLGNTCYMNSVLQALFSIPPLRDYLLQN-SSELINPLGSLNQ---LPRALADLFHA 59
Query: 136 --CQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKL 193
+++ P+ ++ L I+ + Q+D+HEFL +L++ + + +
Sbjct: 60 LQSPNSKNASVSPKNFLQALGKISPQFSGYMQQDAHEFLLFLLDQLHEDLNSLKKRKSH- 118
Query: 194 DSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRT 253
A++ + I +LF L + + C C S+ TP
Sbjct: 119 --AAENESLITKLFQGQLESRLKCLKCKKESS---------------TPEPFSD------ 155
Query: 254 EVTCNSCSHISNLELSLDIRQSSSLDEAL-GHFFAKEYLGGDNLYRCEKCGRKVEATKRF 312
LSL I SSS+ + L G+F E L + Y C KCG K A K+
Sbjct: 156 --------------LSLPIEDSSSVLKLLTGNFLKLEELEKEEKYYCPKCGGKQNAIKKL 201
Query: 313 SVDKPPNVLRLQLKRF----NYHGLKNSRSVQVPLHLEFGKFMHC--RMSHSQLKYKLVS 366
+ + P VL + LKRF K S V+ PL L+ ++ KY+LV+
Sbjct: 202 DISRLPPVLIIHLKRFEDFNRETEKKISDRVEFPLELDLSSYLEEELEGEEPPTKYELVA 261
Query: 367 AVIHHGSSPDSGHYTC-IGSTSSGSYHYFDDE 397
V+H GSS GHY I + FDDE
Sbjct: 262 VVVHSGSSLSGGHYIAYIKKREKNKWVKFDDE 293
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 149 bits (379), Expect = 6e-42
Identities = 102/350 (29%), Positives = 136/350 (38%), Gaps = 75/350 (21%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHC 136
GL+N TC++N LQAL H P N+ L+D H C S CL CAM +
Sbjct: 2 GLINLGATCFMNVILQALLHNPLLRNYFLSD-RHSCTCLSCSPNS--CLSCAMDE--IFQ 56
Query: 137 QAKSGSAIRPELIIKKLKL---IARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKL 193
+ P I L L +R+L + Q+D+HEF +L++ + Y +N
Sbjct: 57 EFYYSGDRSPYGPINLLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDE 116
Query: 194 DSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRT 253
I+Q F L++ VTC C +ST P
Sbjct: 117 SHC---NCIIHQTFSGSLQSSVTCQRCGGVSTT-------------VDPF---------- 150
Query: 254 EVTCNSCSHISNLELSLDIRQSS---------------SLDEALGHFFAKEYLGGDNLYR 298
L+LSLDI S +L + L F E LG D Y+
Sbjct: 151 ------------LDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLG-DFAYK 197
Query: 299 CEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGLKNSRS----VQVPLHLEFGKFM--- 351
C CG EATK+ S+ K P VL QLKRF + K SR VQ PL L +
Sbjct: 198 CSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSS 257
Query: 352 -HCRMSH----SQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDD 396
Y L + V+H G+ D+GHYT G + FDD
Sbjct: 258 IGDTQDSNSLDPDYTYDLFAVVVHKGTL-DTGHYTAYCRQGDGQWFKFDD 306
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 141 bits (357), Expect = 1e-39
Identities = 74/247 (29%), Positives = 113/247 (45%), Gaps = 49/247 (19%)
Query: 163 HRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSH 222
Q+D+HEFL +L++ + + K SS + +S + I+ LFG L + + C C H
Sbjct: 20 SEQQDAHEFLLFLLDKLHEELKK---SSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGH 76
Query: 223 ISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQS--SSLDE 280
S S L L L ++ SL++
Sbjct: 77 ESV---------------------------------STEPELFLSLPLPVKGLPQVSLED 103
Query: 281 ALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHG----LKNS 336
L FF +E L GDN Y+CEK +K EATKR + K P VL + LKRF+++ K +
Sbjct: 104 CLEKFFKEEILEGDNCYKCEKK-KKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLN 162
Query: 337 RSVQVPLHLEFGKFMHC-----RMSHSQLKYKLVSAVIHHGSSPDSGHYTC-IGSTSSGS 390
V PL L+ ++ + KY+LV+ V+H G+S DSGHY + S G
Sbjct: 163 TKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGK 222
Query: 391 YHYFDDE 397
++ F+D+
Sbjct: 223 WYKFNDD 229
Score = 38.6 bits (90), Expect = 0.003
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 77 GLVNAINTCYLNSCLQALFH 96
GL N NTCYLNS LQALF
Sbjct: 1 GLNNLGNTCYLNSVLQALFS 20
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 133 bits (338), Expect = 6e-36
Identities = 87/341 (25%), Positives = 127/341 (37%), Gaps = 77/341 (22%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHC 136
GL N TCY+NS LQ L+ P F N + + + + +S + A+++
Sbjct: 4 GLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKS------VPLALQRLFLFL 57
Query: 137 QAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSA 196
Q EL K L Q D EF L + KL+
Sbjct: 58 QLSESPVKTTELTDKTRSFGWDSLNTFEQHDVQEFFRVLFD--------------KLEEK 103
Query: 197 SKETTP---IYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRT 253
K T I LFG L + C C H S +E
Sbjct: 104 LKGTGQEGLIKNLFGGKLVNYIICKECPHES-----------EREEYF------------ 140
Query: 254 EVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFS 313
L+L + ++ +L+E+L + E L GDN Y CEKCG+KV+A K
Sbjct: 141 ------------LDLQVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVC 188
Query: 314 VDKPPNVLRLQLKRFNY-----HGLK-NSRSVQVPLHLEFGKFM----------HCRMSH 357
K P VL LQLKRF + +K N R + PL L+ + +
Sbjct: 189 FKKLPPVLTLQLKRFEFDFETMMRIKINDR-FEFPLELDMEPYTEKGLAKKEGDSEKKDS 247
Query: 358 SQLKYKLVSAVIHHGSSPDSGHY-TCIGSTSSGSYHYFDDE 397
Y+L ++H G + GHY + I G ++ F+D+
Sbjct: 248 ESYIYELHGVLVHSGDA-HGGHYYSYIKDRDDGKWYKFNDD 287
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 126 bits (319), Expect = 1e-33
Identities = 97/333 (29%), Positives = 145/333 (43%), Gaps = 74/333 (22%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHC 136
GL N NTCY NS LQAL+ F N L T + L FE + +
Sbjct: 1 GLENFGNTCYCNSVLQALY----FENLL---TCLKDL--------FESI--------SEQ 37
Query: 137 QAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGI------QKSYLKAIPSS 190
+ ++G I P+ I +LK +++ +D+HEFL +L+ I ++ KA
Sbjct: 38 KKRTGV-ISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKL 96
Query: 191 NKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTY 250
N ++A + T ++++F L E C +C +S S++ T F
Sbjct: 97 NNNNNAEPQPTWVHEIFQGILTNETRCLTCETVS------------SRDET-----F--- 136
Query: 251 LRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATK 310
L+LS+D+ Q++S+ L F A E L G N + C++C EA K
Sbjct: 137 ---------------LDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEK 181
Query: 311 RFSVDKPPNVLRLQLKRFNYHG-----LKNSRSVQVPLHLE-FGKFMHCRMSHSQLKYKL 364
R + K P +L L LKRF Y +K V PL L F + Y+L
Sbjct: 182 RMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDDA--ENPDRLYEL 239
Query: 365 VSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397
V+ V+H G P+ GHY I + G + FDDE
Sbjct: 240 VAVVVHIGGGPNHGHYVSIVKSHGG-WLLFDDE 271
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 109 bits (275), Expect = 3e-27
Identities = 82/326 (25%), Positives = 120/326 (36%), Gaps = 74/326 (22%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHC 136
GL N N+CYLNS LQ LF IPSF W +D E++ + L C + K LA
Sbjct: 1 GLRNLGNSCYLNSVLQVLFSIPSF-QWRYDDLENKFPSDVV--DPANDLNCQLIK-LAD- 55
Query: 137 QAKSGSAIRPELIIKKL-------------KLIAR-HLEH--HRQEDSHEFLTYLIEGIQ 180
SG +P + + LI + H E RQ+D+ EFL +LI+ +
Sbjct: 56 GLLSGRYSKPASLKSENDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLD 115
Query: 181 KSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKET 240
+ +S LF + + C SC + + E
Sbjct: 116 R------------ESFKNLGLNPNDLFKFMIEDRLECLSCKKVKY-----------TSEL 152
Query: 241 TPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCE 300
+ I L + E + + L++ L +FA E C
Sbjct: 153 SEILSLPVPKDE----------ATEKEEGELVYEPVPLEDCLKAYFAPE----TIEDFCS 198
Query: 301 KCGRKVEATKRFSVDKPPNVLRLQLKRF----NYHGLKNSRSVQVPLHLEFGKFMHCRMS 356
C K ATK P+ L + +KRF N+ K + VP L G
Sbjct: 199 TCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEELGPG-------- 250
Query: 357 HSQLKYKLVSAVIHHGSSPDSGHYTC 382
KY+L++ + H G+S SGHY
Sbjct: 251 ----KYELIAFISHKGTSVHSGHYVA 272
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 107 bits (270), Expect = 2e-26
Identities = 85/333 (25%), Positives = 125/333 (37%), Gaps = 63/333 (18%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLL--NDTEHQTLCEKQSGYQFE--CLVCAMRKT 132
GL N TCY+NS LQ F F + N TE L E ++ ++
Sbjct: 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLI 60
Query: 133 LAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNK 192
A Q + S + P +K L L +Q+D+ EF + ++ K S N
Sbjct: 61 FAQLQFGNRSVVDPSGFVKALGLDTG-----QQQDAQEFSKLFLSLLEAKLSK---SKN- 111
Query: 193 LDSASKETTPIYQLF-GTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYL 251
+ LF G Y C+ C S S + F
Sbjct: 112 ----PDLKNIVQDLFRGEYSYV-TQCSKCGRES------------SLPSK-----F---- 145
Query: 252 RTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKR 311
EL L ++ +L+E + F +E L GDN Y CE C K +AT+R
Sbjct: 146 --------------YELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRR 191
Query: 312 FSVDKPPNVLRLQLKRFNYHGLKNSR-----SVQVPLHLEFGKFMHCRMSHSQ-LKYKLV 365
+ P L QL RF + ++ S+ P L+ G++ S Y+L
Sbjct: 192 IRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEY--LAESDEGSYVYELS 249
Query: 366 SAVIHHGSSPDSGHYTC-IGSTSSGSYHYFDDE 397
+IH G S SGHY I +G ++ F+DE
Sbjct: 250 GVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDE 282
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 100 bits (251), Expect = 1e-24
Identities = 62/241 (25%), Positives = 101/241 (41%), Gaps = 57/241 (23%)
Query: 163 HRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSH 222
Q+D+ EFL +L++G L S I LF L++ +TC +C
Sbjct: 20 ADQQDAQEFLLFLLDG--------------LHSI------IVDLFQGQLKSRLTCLTCGK 59
Query: 223 ISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHIS-NLELSLDIRQSSSLDEA 281
ST T +++S + +L++
Sbjct: 60 TST------------------------------TFEPFTYLSLPIPSGSGDAPKVTLEDC 89
Query: 282 LGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGL---KNSRS 338
L F +E L GDN ++C KC +K +ATK+ ++ + P VL + LKRF++ K +
Sbjct: 90 LRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTP 149
Query: 339 VQVPL-HLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTC-IGSTSSGSYHYFDD 396
V PL L+ ++ R KY L + V H+GS + GHYT + + ++ FDD
Sbjct: 150 VTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSL-NGGHYTAYCKNNETNDWYKFDD 208
Query: 397 E 397
Sbjct: 209 S 209
Score = 34.2 bits (79), Expect = 0.071
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 77 GLVNAINTCYLNSCLQALFH 96
GL N NTCY+NS LQ L
Sbjct: 1 GLRNLGNTCYMNSILQCLSA 20
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 89.8 bits (223), Expect = 3e-20
Identities = 74/317 (23%), Positives = 110/317 (34%), Gaps = 109/317 (34%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHC 136
GL N NTC+ N+ +Q L P+ L
Sbjct: 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE------------------------------ 30
Query: 137 QAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSA 196
P+ + ++ A + ++Q+DSHE L YL++G++
Sbjct: 31 --------TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLR---------------- 66
Query: 197 SKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVT 256
T I +FG L + + C SC +S
Sbjct: 67 ----TFIDSIFGGELTSTIMCESCGTVS-------------------------------- 90
Query: 257 CNSCSHISNLELSLDIRQSS----SLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRF 312
+ L+LSL S++ L F E L G+N + CE C +A K++
Sbjct: 91 ---LVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENC---TKAKKQY 144
Query: 313 SVDKPPNVLRLQLKRF---NYHGL-KNSRSVQVPLHLEFGKFMH--CRMSHSQ--LKYKL 364
+ K P VL + LKRF L K SR V P L+ F C S + + Y+L
Sbjct: 145 LISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRL 204
Query: 365 VSAVIHHGSSPDSGHYT 381
V H G+ SGHY
Sbjct: 205 YGVVEHSGTM-RSGHYV 220
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 88.7 bits (220), Expect = 9e-20
Identities = 80/344 (23%), Positives = 122/344 (35%), Gaps = 103/344 (29%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHC 136
GL+N NTCY+NS LQALF F +L+ + + + + L L H
Sbjct: 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAH----LMHT 56
Query: 137 QAKSGSAI-------RPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPS 189
Q ++ + RP Q+D E+L YL++
Sbjct: 57 QRRAEAPPDYFLEASRPPWFTPG-----------SQQDCSEYLRYLLD------------ 93
Query: 190 SNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGT 249
+L T I ++FG L T + C +C+ S A E
Sbjct: 94 --RLH------TLIEKMFGGKLSTTIRCLNCNSTS-----------ARTERFR------- 127
Query: 250 YLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEAT 309
+L+LS S+ + L +F + E L GDN Y CEKC +A
Sbjct: 128 ---------------DLDLSF-----PSVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAE 167
Query: 310 KRFSVDKPPNVLRLQLKRFNYHGLKNSR-------------SVQVPLHLEFGKFMHCRMS 356
K V P L L L RF+Y + R S+ V + + + +
Sbjct: 168 KEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKKE 227
Query: 357 ----------HSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
Q+ Y+L + V+H G S +SGHY + +
Sbjct: 228 EESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDA 271
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 88.5 bits (219), Expect = 3e-19
Identities = 98/401 (24%), Positives = 152/401 (37%), Gaps = 65/401 (16%)
Query: 29 PSNERK----SLSSKDSSSNGNSKCLLPKPKEILYSPNKITLGWQGRVPAGAGLVNAINT 84
S ER SL+ K S S L P E L +P K+ + + GL N NT
Sbjct: 23 YSLERYFEDVSLAYKLYSM-LRSLKLDPHFME-LANPKKMVVSKRKDNLPPNGLRNKGNT 80
Query: 85 CYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQS--------GYQFECLVCAMRKTLAHC 136
CY+N LQ L I + L Q + QF L C
Sbjct: 81 CYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETP-----GC 135
Query: 137 QAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSA 196
+I P I L + Q+DS EFL + ++ + L+
Sbjct: 136 HGPK--SISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLH----------EDLNG- 182
Query: 197 SKETTPIYQLFGTYL--RTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTE 254
+K +PI +L + R E+ + SH S + + + F ++
Sbjct: 183 NKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRS-------NKSLVAKTFFGQDKSR 235
Query: 255 VTCNSCSHIS-----NLELSLDIRQSSS--LDEALGHFFAKEYLGGDNLYRCEKCGRKVE 307
+ C +C++ S L + + L E + F+ +E L G + +RC KCGRK
Sbjct: 236 LQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKES 295
Query: 308 ATKRFSVDKPPNVLRLQLKRFNYH-----------GLKNSRSVQVPLHLEFGKFMHCRMS 356
+ KR + P+VL + + RF+ G KN+ SV+V + L F + +
Sbjct: 296 SRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLF----NNGIG 351
Query: 357 HSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397
+ KY L+ V H+G+ + GHY S Y DD
Sbjct: 352 YIPRKYSLLGVVCHNGTL-NGGHYFSEVKRSGTWNVY-DDS 390
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 87.1 bits (216), Expect = 3e-19
Identities = 76/342 (22%), Positives = 117/342 (34%), Gaps = 70/342 (20%)
Query: 76 AGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMR----- 130
+GL N CYLN+ LQ +F IP N +L H C K++ CL+C +
Sbjct: 1 SGLENNGPNCYLNALLQLMFFIPPLFNAILR---HSADCPKEN-----CLLCELGFLFDM 52
Query: 131 ---KTLAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAI 187
T +CQA + +++ I Q+D E +++E + L
Sbjct: 53 LDKSTGQNCQATN--------LLRTFSGIPEAAALGLQQDIQEANRFILEQLSLPLLTLK 104
Query: 188 PSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLF 247
P + + LFGT + + C+SC + S + P+
Sbjct: 105 PDIFHNRCTGESGDSLDSLFGTSFISSIRCDSC-------------GNESVKEEPLL--- 148
Query: 248 GTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVE 307
T +D Q + L +E N C C +
Sbjct: 149 --------TLELPYP------PIDKPQGRTFSNILERSLNREK---INRITCNSCRKYSL 191
Query: 308 ATKRFSVDKPPNVLRLQLKRFNYHGLKNSR----SVQVPLHLEFGKFM------HCRMSH 357
A R V P +L + LKR+N N V +PL + F+ +
Sbjct: 192 ANSRKHVKSLPPILGICLKRYNVTPNGNWSRLNTFVDIPLEIRLPHFIQDDEMVNEGPLS 251
Query: 358 SQLKYKLVSAVIHHGSSPDSGHY-TCIGSTSSGSYHY--FDD 396
KY+L V H G S SGH + I S + F+D
Sbjct: 252 GNFKYELQGVVCHIGDSTHSGHLVSFIRVAPSEDDQWYLFND 293
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 81.2 bits (201), Expect = 3e-17
Identities = 78/333 (23%), Positives = 120/333 (36%), Gaps = 68/333 (20%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHC 136
GL N NTCYLNS LQ L +P + L N + + S L A+R
Sbjct: 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDN----LTNALRDLFDTM 56
Query: 137 QAKSGSAIRPELIIKKLK-----LIARHLEHH-RQEDSHEFLTYLIEGIQKSYLKAIPSS 190
K + P ++ L+ + + Q+D+ E + L+ +
Sbjct: 57 D-KKQEPVPPIEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLS---------- 105
Query: 191 NKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTY 250
KL A + + I QLFG L T++ C D T Y+L
Sbjct: 106 QKLPGAGSKGSFIDQLFGIELETKMKCTESP------------DEEEVSTESEYKL---- 149
Query: 251 LRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATK 310
C+ S + ++ + L + L K+ L + GR TK
Sbjct: 150 -----QCH-ISI------TTEV---NYLQDGL-----KKGLEEEIEKHSPTLGRDAIYTK 189
Query: 311 RFSVDKPPNVLRLQLKRFNYHG-----LKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLV 365
+ + P L +Q RF + K R V+ P L+ + C + S Y+LV
Sbjct: 190 TSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYEL--C--TPSGY-YELV 244
Query: 366 SAVIHHGSSPDSGHYTCIGSTSSGSYHY-FDDE 397
+ + H G S DSGHY + FDD+
Sbjct: 245 AVITHQGRSADSGHYVAWVRRKNDGKWIKFDDD 277
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 79.3 bits (195), Expect = 5e-16
Identities = 59/287 (20%), Positives = 104/287 (36%), Gaps = 62/287 (21%)
Query: 75 GAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLA 134
GL+N N+CYL+S +Q+L + +H +C + ECL C + K L+
Sbjct: 303 YVGLINLGNSCYLSSVIQSLVGYAVS-KEEFDLLQHFEICYMK--NPLECLFCQLMKLLS 359
Query: 135 HCQAKSG----SAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSS 190
+ + I P + Q+D+HEFL +L+E I+K
Sbjct: 360 KMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGE------- 412
Query: 191 NKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTY 250
S PI LF + ++C+ C +S S E+ + +F
Sbjct: 413 -----RSYLIPPITSLFEFEVERRLSCSGCMDVSY-----------SYESMLMICIFLE- 455
Query: 251 LRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATK 310
+ + +++ FF L + CE C K +A++
Sbjct: 456 --------------------GNDEPQDIRKSVEAFF----LPDTIEWSCENCKGKKKASR 491
Query: 311 RFSVDKPPNVLRLQLKRFNYHGLKNSRSVQVPL------HLEFGKFM 351
+ + P L LQ+ R++ K + P+ ++ G FM
Sbjct: 492 KPFIKSLPKYLILQVGRYSLQNYK-VEKLSDPIEMRSDDMIKLGSFM 537
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 72.2 bits (177), Expect = 5e-14
Identities = 72/336 (21%), Positives = 125/336 (37%), Gaps = 72/336 (21%)
Query: 76 AGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAH 135
GL N NTCYLNS LQ L+ P F + L + L S + + +
Sbjct: 25 VGLNNLGNTCYLNSVLQVLYFCPGFKHGL------KHLVSLISSVEQLQSSFLLNPEKYN 78
Query: 136 CQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDS 195
+ + + R ++ L+ + E + Q D+ E L ++ IQ+ K
Sbjct: 79 DELANQAPRR---LLNALREVNPMYEGYLQHDAQEVLQCILGNIQELVEK---------- 125
Query: 196 ASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKE-----TTPIYQLFGTY 250
F L C C + + +E + P+
Sbjct: 126 ----------DFQGQLVLRTRCLECETFTER-----------REDFQDISVPV------- 157
Query: 251 LRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATK 310
+E++ + S + + ++ +L A+ F + E + G++ Y CE C EA +
Sbjct: 158 QESELSKSEESSEISPDPKTEM---KTLKWAISQFASVERIVGEDKYFCENCHHYTEAER 214
Query: 311 RFSVDKPPNVLRLQLKRFNYHGL---------KNSRSVQVPLHLEFGKFMHCRMSHSQLK 361
DK P V+ + LK F +G K + + PL L ++ +
Sbjct: 215 SLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTKPKNDV--- 271
Query: 362 YKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397
Y+L + V+H G++ SGHY T+ + FDD
Sbjct: 272 YRLFAVVMHSGATISSGHY-----TAYVRWLLFDDS 302
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 66.4 bits (162), Expect = 1e-11
Identities = 74/330 (22%), Positives = 117/330 (35%), Gaps = 67/330 (20%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHC 136
GL N TCY+NS LQ+LF I F + + G L A+++ +
Sbjct: 195 GLRNQGATCYMNSLLQSLFFIAKFRK-----DVYGIPTDHPRGRDSVAL--ALQRLFYNL 247
Query: 137 QAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSA 196
Q EL + Q D EF L + ++KS ++ N L+
Sbjct: 248 QTGEEPVDTTELTRS---FGWDSDDSFMQHDIQEFNRVLQDNLEKS-MRGTVVENALN-- 301
Query: 197 SKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVT 256
+F +++ + C Y+ R E
Sbjct: 302 --------GIFVGKMKSYIKC----------------------VNVNYESA----RVEDF 327
Query: 257 CNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDK 316
++ L+++ +L E+ + E L GDN Y EK G +A K +
Sbjct: 328 ---------WDIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKHGL-QDAKKGVIFES 377
Query: 317 PPNVLRLQLKRFNY-----HGLKNSRSVQVPLHLEFGKFMHCRMSHSQLK---YKLVSAV 368
P VL LQLKRF Y +K + + PL ++ F+ S+ Y L +
Sbjct: 378 LPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVL 437
Query: 369 IHHGSSPDSGH-YTCIGSTSSGSYHYFDDE 397
+H G GH Y + G ++ FDD
Sbjct: 438 VHSGDL-HEGHYYALLKPEKDGRWYKFDDT 466
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 240
Score = 57.0 bits (138), Expect = 2e-09
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 39/142 (27%)
Query: 257 CNSCSHIS--------NLELSL---DIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRK 305
C C S L L + ++L+ L F + E + Y+C++C
Sbjct: 66 CLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDD---YKCDRC--- 119
Query: 306 VEATKRFSVDKPPNVLRLQLKR--FNYHG--LKNSRSVQVPLHLEFGKFMHCRMSHSQLK 361
+ + + P +L + L R F+ G KNS V P L ++
Sbjct: 120 -----QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL------------PKVL 162
Query: 362 YKLVSAVIHHGSSPDSGHYTCI 383
Y+L + V+H+GS SGHY C
Sbjct: 163 YRLRAVVVHYGS-HSSGHYVCY 183
Score = 39.3 bits (92), Expect = 0.002
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQ 111
GLVN NTC++NS LQAL +PS +L E Q
Sbjct: 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFLEQQ 35
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 51.0 bits (122), Expect = 7e-07
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 277 SLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYH---GL 333
+L + L F E LG + + C C +A+K+ + + P +L + LKRF+
Sbjct: 676 TLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRD 735
Query: 334 KNSRSVQVPL-HLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTC-IGSTSSGSY 391
K V+ P+ L+ + +L Y L + H+G GHYT + ++ +
Sbjct: 736 KIDDLVEYPIDDLDLSGVEYMVDD-PRLIYDLYAVDNHYGGL-SGGHYTAYARNFANNGW 793
Query: 392 HYFDD 396
+ FDD
Sbjct: 794 YLFDD 798
Score = 50.3 bits (120), Expect = 1e-06
Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 21/170 (12%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHC 136
GL N NTCY+NS LQ L H ++ L+D +++ E+ + A +
Sbjct: 267 GLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQL 326
Query: 137 QAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEG--------IQKSYLKAIP 188
+ A P K + + Q+DS EF+ +L++G I+K Y
Sbjct: 327 YDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPD 386
Query: 189 SSNKLDSASKET-------------TPIYQLFGTYLRTEVTCNSCSHIST 225
S D K+ + I LF ++ +TC C +S
Sbjct: 387 LSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSI 436
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 343
Score = 38.2 bits (89), Expect = 0.006
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 76 AGLVNAINTCYLNSCLQALFHIPSFHNWLLN 106
AGL N NTCYLNS LQ F I + +LN
Sbjct: 2 AGLDNIGNTCYLNSLLQYFFTIKPLRDLVLN 32
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 245
Score = 37.1 bits (86), Expect = 0.009
Identities = 43/226 (19%), Positives = 70/226 (30%), Gaps = 66/226 (29%)
Query: 165 QEDSHEFLTYLIEGI----------QKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTE 214
Q+D+HEFL L+E I I N L++ Y G E
Sbjct: 33 QQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIG--CSFE 90
Query: 215 VTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQ 274
+ + + ++LD + F T+ E C+SC +
Sbjct: 91 ENVSDVGNFLDVSMIDNKLDIDELLISN----FKTWSPIEKDCSSCKC-----------E 135
Query: 275 SSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGLK 334
S+ E + F P L + LKR+
Sbjct: 136 SAISSERIMTF--------------------------------PECLSINLKRYKLR--- 160
Query: 335 NSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHY 380
+ +L+ + + + + KY LV+ + H G SP GHY
Sbjct: 161 ----IATSDYLKKNEEIMKKYCGTDAKYSLVAVICHLGESPYDGHY 202
Score = 30.6 bits (69), Expect = 1.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 78 LVNAINTCYLNSCLQALFHIPSFHNWLLND 107
LVN N+CY NS +QAL I + ND
Sbjct: 2 LVNTGNSCYFNSTMQALSSIGKINTEFDND 31
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 35.8 bits (83), Expect = 0.039
Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 33/103 (32%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHC 136
GL N N Y N +QAL H+ N+ L
Sbjct: 121 GLNNIKNNDYANVIIQALSHVKPIRNFFLLYEN--------------------------- 153
Query: 137 QAKSGSAIRPELIIKKLKLIARHLEHHR----QEDSHEFLTYL 175
R ++K+L + R + + R HE L +
Sbjct: 154 --YENIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAV 194
Score = 35.4 bits (82), Expect = 0.049
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 310 KRFSVDKPPNVLRLQLKRF---NYHGLKNSRSVQVPLH-LEFGKFMHC--RMSHSQLKYK 363
KR+ + + P L +KRF N+ KN V P+ L+ ++H + KY
Sbjct: 325 KRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYN 384
Query: 364 LVSAVIHHGSSPDSGHY 380
LV+ ++H G+ + G +
Sbjct: 385 LVANIVHEGTPQEDGTW 401
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 268
Score = 35.2 bits (81), Expect = 0.039
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 76 AGLVNAINTCYLNSCLQALFHIPSFHNWLL-----NDTEHQTLCEKQSGYQFECLV 126
AGL N I Y NS LQ L+ IP F N+ E LCE GY F L+
Sbjct: 16 AGLENHITNSYCNSLLQLLYFIPPFRNFTAIILVACPKESCLLCE--LGYLFSTLI 69
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 241
Score = 34.8 bits (80), Expect = 0.050
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 24/106 (22%)
Query: 316 KPPNVLRLQLKRFNYHGLKNSRS---VQVPLHLEFGKFM------------HCRMSHSQ- 359
K P+ L + LKR+ K + + +P ++ F+ CR+ +
Sbjct: 97 KAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDK 156
Query: 360 ------LKYKLV--SAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397
K+KL SAV H G+S ++GHY S S D+E
Sbjct: 157 DFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNE 202
>gnl|CDD|197903 smart00834, CxxC_CXXC_SSSS, Putative regulatory protein.
CxxC_CXXC_SSSS represents a region of about 41 amino
acids found in a number of small proteins in a wide
range of bacteria. The region usually begins with the
initiator Met and contains two CxxC motifs separated by
17 amino acids. One protein in this entry has been noted
as a putative regulatory protein, designated FmdB. Most
proteins in this entry have a C-terminal region
containing highly degenerate sequence.
Length = 41
Score = 27.1 bits (61), Expect = 1.6
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 297 YRCEKCGRKVEATKRFSVDKPP 318
YRCE CG E ++ S D
Sbjct: 6 YRCEDCGHTFEVLQKISDDPLT 27
>gnl|CDD|223995 COG1069, AraB, Ribulose kinase [Energy production and conversion].
Length = 544
Score = 30.4 bits (69), Expect = 1.7
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 132 TLAH-CQAKSGSAIRPELIIKKLKLIARHLEHHRQE-----DSHEFLTYLIEG-IQKS 182
H G I PE++I KL + R + D ++LT+ + G I +S
Sbjct: 124 ATCHPVLDYYGGKISPEMMIPKLMWLKREAPAVWERAAHIFDLADWLTWKLTGSIARS 181
>gnl|CDD|234747 PRK00398, rpoP, DNA-directed RNA polymerase subunit P; Provisional.
Length = 46
Score = 26.0 bits (58), Expect = 5.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 296 LYRCEKCGRKVE 307
Y+C +CGR+VE
Sbjct: 3 EYKCARCGREVE 14
>gnl|CDD|213729 TIGR02605, CxxC_CxxC_SSSS, putative regulatory protein, FmdB
family. This model represents a region of about 50
amino acids found in a number of small proteins in a
wide range of bacteria. The region begins usually with
the initiator Met and contains two CxxC motifs separated
by 17 amino acids. One member of this family is has been
noted as a putative regulatory protein, designated FmdB
(SP:Q50229, PMID:8841393 ). Most members of this family
have a C-terminal region containing highly degenerate
sequence, such as
SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in
Mycobacterium tuberculosis and
VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces
avermitilis. These low complexity regions, which are not
included in the model, resemble low-complexity
C-terminal regions of some heterocycle-containing
bacteriocin precursors [Regulatory functions, DNA
interactions].
Length = 52
Score = 26.1 bits (58), Expect = 5.1
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 297 YRCEKCGRKVEATKRFSVDKPP 318
YRC CG + E ++ S D P
Sbjct: 6 YRCTACGHRFEVLQKMS-DDPL 26
>gnl|CDD|235499 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A
protein; Provisional.
Length = 283
Score = 28.7 bits (65), Expect = 5.3
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 20/49 (40%)
Query: 252 RTEVTCNSC-SHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRC 299
RTE+ C +C +H LGH F E L N C
Sbjct: 80 RTEIVCANCGAH-------------------LGHVFEGEGLTPKNTRHC 109
>gnl|CDD|224272 COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense
mechanisms].
Length = 799
Score = 29.0 bits (65), Expect = 5.7
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 282 LGHFFAKEYLGGDNLYRCEKCGRKVEAT 309
LG F + L G C CG K
Sbjct: 381 LGILFPRYELDGPGERTCSVCGNKRAKG 408
>gnl|CDD|220362 pfam09723, CxxC_CxxC_SSSS, Zinc ribbon domain. This entry
represents a region of about 41 amino acids found in a
number of small proteins in a wide range of bacteria.
The region usually begins with the initiator Met and
contains two CxxC motifs separated by 17 amino acids.
One protein in this entry has been noted as a putative
regulatory protein, designated FmdB. Most proteins in
this entry have a C-terminal region containing highly
degenerate sequence.
Length = 42
Score = 25.6 bits (57), Expect = 7.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 297 YRCEKCGRKVEATKRFSVDKPP 318
YRCE CG E ++ S D
Sbjct: 6 YRCEDCGHTFEVLQKISDDPLA 27
>gnl|CDD|222704 pfam14353, CpXC, CpXC protein. This presumed domain is
functionally uncharacterized. This domain is found in
bacteria and archaea, and is typically between 122 and
134 amino acids in length. It contains four conserved
cysteines forming two CpXC motifs.
Length = 128
Score = 27.3 bits (61), Expect = 7.1
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 254 EVTCNSCSHISNLEL--SLDIRQSSSLDEALGHFFAKEYLGGD-NLYRCEKCGRKV 306
E+TC SC H E+ S++ + L EA+ L G + C CG +
Sbjct: 1 EITCPSCGHEFEAEVWTSVNADEDPELREAI--------LDGTLFTFTCPSCGHEF 48
>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein
Serine/Threonine Kinases, Novel Protein Kinase C theta
and delta. Serine/Threonine Kinases (STKs), Novel
Protein Kinase C (nPKC), theta and delta-like isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The nPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
nPKCs are calcium-independent, but require DAG
(1,2-diacylglycerol) and phosphatidylserine (PS) for
activity. There are four nPKC isoforms, delta, epsilon,
eta, and theta. PKC-theta is selectively expressed in
T-cells and plays an important and non-redundant role in
several aspects of T-cell biology. PKC-delta plays a
role in cell cycle regulation and programmed cell death
in many cell types.
Length = 316
Score = 28.2 bits (63), Expect = 7.4
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 285 FFAKEYL-GGDNLYRCEKCGRKVEATKRF 312
FF EYL GGD ++ + GR EA RF
Sbjct: 72 FFVMEYLNGGDLMFHIQSSGRFDEARARF 100
>gnl|CDD|149635 pfam08646, Rep_fac-A_C, Replication factor-A C terminal domain.
This domain is found at the C terminal of replication
factor A. Replication factor A (RPA) binds
single-stranded DNA and is involved in replication,
repair, and recombination of DNA.
Length = 146
Score = 27.6 bits (62), Expect = 7.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 293 GDNLYRCEKCGRKVE 307
GD +RCEKC ++
Sbjct: 34 GDGTWRCEKCDKEFP 48
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 28.2 bits (63), Expect = 8.6
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 30 SNERKSLSSKDSSSNGNSKCLLPKPKEILYSPNKITLGWQGRVPAGAGLVNAI 82
S +RKS+S S GN + P+ +L I G VP + N I
Sbjct: 429 SRDRKSMSVLCKPSTGNKLFVKGAPEGVLERCTHILNGDGRAVPLTDKMKNTI 481
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.395
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,813,477
Number of extensions: 1696296
Number of successful extensions: 1592
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1523
Number of HSP's successfully gapped: 62
Length of query: 397
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 298
Effective length of database: 6,546,556
Effective search space: 1950873688
Effective search space used: 1950873688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)