RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1713
(397 letters)
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease,
substrate ENZY complex, hydrolase-protein binding
complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A
2ibi_A
Length = 348
Score = 230 bits (588), Expect = 8e-73
Identities = 78/344 (22%), Positives = 135/344 (39%), Gaps = 42/344 (12%)
Query: 69 QGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCA 128
AGL N NTC++NS LQ L + ++ L + S LV
Sbjct: 3 SKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQR-LYMRDLHHGSNAHT-ALVEE 60
Query: 129 MRKTL-AHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAI 187
K + + + P +++ A + Q+D+ EFL +L++G+ + +
Sbjct: 61 FAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNE-VNRV 119
Query: 188 PSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLF 247
K + + + P + R +E + I LF
Sbjct: 120 TLRPKSNPENLDHLPDDEKGRQMWR---------------------KYLEREDSRIGDLF 158
Query: 248 GTYLRTEVTCNSCSHISN-----LELSLDIRQSS----SLDEALGHFFAKEYLGGDNLYR 298
L++ +TC C + S +LSL I + +L + + F ++ L GD
Sbjct: 159 VGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPT 218
Query: 299 CEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGL---KNSRSVQVPL-HLEFGKFMHCR 354
C +C + K+FS+ + P +L L LKRF+ + K + V PL L+ +F
Sbjct: 219 CCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASE- 277
Query: 355 MSHSQLKYKLVSAVIHHGSSPDSGHYTC-IGSTSSGSYHYFDDE 397
+ + Y L + H G++ GHYT S +G +H F+D
Sbjct: 278 -NTNHAVYNLYAVSNHSGTT-MGGHYTAYCRSPGTGEWHTFNDS 319
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 224 bits (571), Expect = 7e-69
Identities = 86/361 (23%), Positives = 143/361 (39%), Gaps = 59/361 (16%)
Query: 60 SPNKITLGWQGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSG 119
K + R +GL+N +TC+++S LQ L H P F ++ +
Sbjct: 126 VCTKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPD 185
Query: 120 YQFEC----LVCAMRKTLAHCQAKSGS-----AIRPELIIKKLKLIARHLEHHRQEDSHE 170
F C +V + L QA S S ++ I ++L + Q+D+HE
Sbjct: 186 KCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHE 245
Query: 171 FLTYLIEGIQKSYLKAIPSSNKL--DSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCL 228
F ++I I +SY+ +P++ ++ + + ++ +F L + + C C + S
Sbjct: 246 FWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNS---- 301
Query: 229 FHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAK 288
+TT F L+LSLDI+ L E L F K
Sbjct: 302 ----------KTT--IDPF------------------LDLSLDIKDKKKLYECLDSFHKK 331
Query: 289 EYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNY----HGLKNSRSVQVPLH 344
E L N Y C +C +A K+ + K P+VL LQLKRF + K ++ P +
Sbjct: 332 EQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTY 390
Query: 345 LEFGKFMHCRMSHSQ--------LKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDD 396
L + + + Y+L+ V H G + + GHY S G + F+D
Sbjct: 391 LNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKG-TVNEGHYIAFCKISGGQWFKFND 449
Query: 397 E 397
Sbjct: 450 S 450
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease,
UBL conjugation pathway deubiquitinating enzyme, DUB,
zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB:
3n3k_A
Length = 396
Score = 219 bits (559), Expect = 5e-68
Identities = 84/394 (21%), Positives = 138/394 (35%), Gaps = 41/394 (10%)
Query: 16 SKSKLSLNNVSSPPSNERKSLSSKDSSSNGNSKCLLPKPKEILYSPNKITLGWQGRVPAG 75
L SP + +K + L + +P + G PA
Sbjct: 8 HHHSSGLVPRGSPTVTPTVNRENKPTCYPKAEISRLSASQIRNLNP-----VFGGSGPAL 62
Query: 76 AGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAH 135
GL N NTCY+NS LQ L + P ++ + + + +
Sbjct: 63 TGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKA 122
Query: 136 CQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDS 195
I P+ + I + Q+DS E L +L++G+ + K
Sbjct: 123 LWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNK---------- 172
Query: 196 ASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEV 255
+ + +L Q + I LF ++ V
Sbjct: 173 -ADNRKRYKEENNDHLDDFKAAEHAWQKHKQ-----------LNESIIVALFQGQFKSTV 220
Query: 256 TCNSCSHISN-----LELSLDI--RQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEA 308
C +C S + LSL + +L + L F +E L +N + C C + ++
Sbjct: 221 QCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDS 280
Query: 309 TKRFSVDKPPNVLRLQLKRFNYHGL---KNSRSVQVPLH-LEFGKFMHCRMSHSQLKYKL 364
K+ + K P VL + LKRF+Y G K SV PL L+ +++ ++ KY L
Sbjct: 281 LKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYV-IGPKNNLKKYNL 339
Query: 365 VSAVIHHGSSPDSGHYTC-IGSTSSGSYHYFDDE 397
S H+G D GHYT + + + FDD
Sbjct: 340 FSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDH 372
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo
sapiens}
Length = 367
Score = 202 bits (515), Expect = 8e-62
Identities = 75/347 (21%), Positives = 141/347 (40%), Gaps = 41/347 (11%)
Query: 73 PAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKT 132
P GL N NTC++NS LQ L + ++ L D + + A +
Sbjct: 6 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAEL 65
Query: 133 LAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQ--------KSYL 184
+ + + + P + ++ A ++Q+DS E L +L++G+ K YL
Sbjct: 66 IKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 125
Query: 185 KAIPSSNKLDSA----------SKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLD 234
+ ++ + D+ + + I F ++ + C C+ +S D
Sbjct: 126 ELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSV------TFD 179
Query: 235 SASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGD 294
T P+ + + L+ + + +L + + F E LG
Sbjct: 180 PFCYLTLPL----------PLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEH 229
Query: 295 NLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGL---KNSRSVQVPLH-LEFGKF 350
+ + C C + +ATK+F + P +L + LKRF+Y+ K V+ P+ L +F
Sbjct: 230 DPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEF 289
Query: 351 MHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTC-IGSTSSGSYHYFDD 396
+ C +S Y L++ H+G + GHYT + +G ++YFDD
Sbjct: 290 V-CNLSARPYVYDLIAVSNHYG-AMGVGHYTAYAKNKLNGKWYYFDD 334
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural
genomics consortium, SGC, activator, alternative
splicing, chromatin regulator, nucleus, polymorphism,
protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A
Length = 355
Score = 199 bits (507), Expect = 9e-61
Identities = 75/336 (22%), Positives = 130/336 (38%), Gaps = 28/336 (8%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHC 136
GL N NTC+LN+ LQ L ++ L Q + + + L
Sbjct: 5 GLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGAL--W 62
Query: 137 QAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSA 196
S A+ P + + Q+D+ EFL L+E + + + + +
Sbjct: 63 HPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILAN 122
Query: 197 SKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVT 256
+P + E++ + +++ + +E + I LF L++ +
Sbjct: 123 GPVPSPPRRGGALLEEPELSDDDRANLMWKRYLE-------REDSKIVDLFVGQLKSCLK 175
Query: 257 CNSCSHISN-----LELSLDIRQSS------SLDEALGHFFAKEYLGGDNLYRCEKCGRK 305
C +C + S +LSL I + SL + F +E L +N C++C +K
Sbjct: 176 CQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQK 235
Query: 306 VEATKRFSVDKPPNVLRLQLKRFNYHGL---KNSRSVQVPLH-LEFGKFMHCRMSHSQLK 361
+TK+ +V + P +L L L RF+ K+S V PL L G F
Sbjct: 236 TRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASD--KAGSPV 293
Query: 362 YKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397
Y+L + H G S GHYT + +H ++D
Sbjct: 294 YQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDS 327
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 193 bits (492), Expect = 2e-58
Identities = 66/327 (20%), Positives = 107/327 (32%), Gaps = 64/327 (19%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHC 136
GL N TCY+NS LQ LF + + + + A+++
Sbjct: 8 GLKNQGATCYMNSLLQTLFFTNQLRKAVYM-------MPTEGDDSSKSVPLALQRVFYEL 60
Query: 137 QAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSA 196
Q S + + + K L+ Q D E L++ ++
Sbjct: 61 Q-HSDKPVGTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKG----------- 106
Query: 197 SKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVT 256
+ I +LF + + + C + S R E
Sbjct: 107 TCVEGTIPKLFRGKMVSYIQCKEVDYRSD--------------------------RRE-- 138
Query: 257 CNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDK 316
++ L I+ ++ E+ + A E L GDN Y + G EA K
Sbjct: 139 -------DYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLT 190
Query: 317 PPNVLRLQLKRFNY-----HGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHH 371
P VL LQL RF Y +K + + P L +F+ Y L + ++H
Sbjct: 191 LPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHS 250
Query: 372 GSSPDSGHYTCIG-STSSGSYHYFDDE 397
G + GHY G + FDD+
Sbjct: 251 GDN-HGGHYVVYLNPKGDGKWCKFDDD 276
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 197 bits (502), Expect = 2e-58
Identities = 69/373 (18%), Positives = 118/373 (31%), Gaps = 68/373 (18%)
Query: 32 ERKSLSSKDSSSNGNSKCLLPKPKEILYSPNKITLGWQGRVPAG-AGLVNAINTCYLNSC 90
++ + + K + + + W + G GL N TCY+NS
Sbjct: 134 AWSEVTDPEKGFIDDDKVTFE---VFVQADAPHGVAWDSKKHTGYVGLKNQGATCYMNSL 190
Query: 91 LQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELII 150
LQ LF + + + + A+++ Q S + + +
Sbjct: 191 LQTLFFTNQLRKAVYM-MPTEGDDSSK------SVPLALQRVFYELQ-HSDKPVGTKKLT 242
Query: 151 KKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTY 210
K L+ Q D E L++ ++ + I +LF
Sbjct: 243 KSFGW--ETLDSFMQHDVQELCRVLLDNVENK-----------MKGTCVEGTIPKLFRGK 289
Query: 211 LRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVTCNSCSHISNLELSL 270
+ + + C + S R E ++ L
Sbjct: 290 MVSYIQCKEVDYRSD--------------------------RRE---------DYYDIQL 314
Query: 271 DIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNY 330
I+ ++ E+ + A E L GDN Y + G EA K P VL LQL RF Y
Sbjct: 315 SIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMY 373
Query: 331 -----HGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIG- 384
+K + + P L +F+ Y L + ++H G + GHY
Sbjct: 374 DPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDN-HGGHYVVYLN 432
Query: 385 STSSGSYHYFDDE 397
G + FDD+
Sbjct: 433 PKGDGKWCKFDDD 445
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes,
DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo
sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Length = 404
Score = 175 bits (444), Expect = 5e-51
Identities = 69/390 (17%), Positives = 120/390 (30%), Gaps = 107/390 (27%)
Query: 75 GAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLA 134
GL N NTCY+N+ +Q + +P + L + + + + A+R
Sbjct: 14 PCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMAS--AQYITAALRDLFD 71
Query: 135 HCQAKSGSAIRPELIIKKLKLIARH------LEHHRQEDSHEFLTYLIEGIQKSYLKAIP 188
K+ S+I P ++++ L + + Q+D++E ++ +Q+ L+AI
Sbjct: 72 SMD-KTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQK-LEAIE 129
Query: 189 SSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFG 248
+ ++ S + SK+ + I Q FG
Sbjct: 130 DDSVKETDSSSASAATP-------------------------------SKKKSLIDQFFG 158
Query: 249 TYLRTEVTCNSCSHISN-------LELSLDIRQS-SSLDEALGHFFAKEYLGGDNLYRCE 300
T + C L+LS I Q L L K L + +
Sbjct: 159 VEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGL-----KLRLQEEITKQSP 213
Query: 301 KCGRKVEATKRFSVDKPPNVLRLQLKRFNY-----HGLKNSRSVQVPLHLEFGKFM---- 351
R K + + P L +Q+ RF Y K + V+ PL L+ +
Sbjct: 214 TLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPEL 273
Query: 352 --------------------------------------------HCRMSHSQLKYKLVSA 367
S++ Y L +
Sbjct: 274 QEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAV 333
Query: 368 VIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397
+ H G S SGHY + FDD+
Sbjct: 334 LTHQGRSSSSGHYVSWVKRKQDEWIKFDDD 363
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 126 bits (317), Expect = 1e-31
Identities = 53/328 (16%), Positives = 97/328 (29%), Gaps = 49/328 (14%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHC 136
G+ N N+CYLNS +Q LF IP F ++ E Q + K
Sbjct: 346 GIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQ--DFSTQVAKLGHGL 403
Query: 137 QAKSGS--------------------AIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLI 176
+ S I P + + +RQ+D+ EF +LI
Sbjct: 404 LSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLI 463
Query: 177 EGIQKSYLKAIPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSA 236
N ++ + + ++F + ++ C + +
Sbjct: 464 --------------NMVERNCRSSENPNEVFRFLVEEKIKCLATEKVKY---TQRVDYIM 506
Query: 237 SKETTPIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNL 296
L L + + L +R L + A E + +
Sbjct: 507 QLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQV---DD 563
Query: 297 YRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGL----KNSRSVQVPLHLEFGKFMH 352
+ K A K P+ L +Q+K+F + K S+++P E
Sbjct: 564 FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMP---EELDISQ 620
Query: 353 CRMSHSQLKYKLVSAVIHHGSSPDSGHY 380
R + Q + + + +PD
Sbjct: 621 LRGTGLQPGEEELPDIAPPLVTPDEPKA 648
Score = 42.6 bits (99), Expect = 2e-04
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 354 RMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397
++ KY+L + + H G+S GHY C G + ++D+
Sbjct: 789 KVRDGPGKYQLFAFISHMGTSTMCGHYVCH-IKKEGRWVIYNDQ 831
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural
genomics, JCSG, PSI, protein structure initiative; HET:
MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Length = 415
Score = 101 bits (252), Expect = 6e-24
Identities = 57/362 (15%), Positives = 120/362 (33%), Gaps = 43/362 (11%)
Query: 76 AGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQ--FECLVCAMRKTL 133
G N NTCYLN+ LQAL+ + + +LN Q + + + + +V M++
Sbjct: 25 VGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCF 84
Query: 134 AHCQAKSGSAIRPELIIKKLKLI-------ARHLEHHRQEDSHEFLTYLIEGIQ------ 180
+ Q KS ++ P +++ L+ ++Q+D+ E T L +
Sbjct: 85 ENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGDK 144
Query: 181 ---------KSYLKAIPSSNKLDSASKETTPIYQLF----GTYLRTEVTCNSCSHISTQC 227
K+ +K + N + E+ Q ++R + I +
Sbjct: 145 FSEDFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEKIEKRS 204
Query: 228 LFHSRLDSASKETT------PIYQLFGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEA 281
S E + + + T + + + + L
Sbjct: 205 DLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTP- 263
Query: 282 LGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRFNYHGLKNS----R 337
+ A++ D L + EK + E + P + + R Y +
Sbjct: 264 --EYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEK 321
Query: 338 SVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGST--SSGSYHYFD 395
+ + + + + Y L+ + H G++ +SGHY ++ F+
Sbjct: 322 DQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFN 381
Query: 396 DE 397
D+
Sbjct: 382 DD 383
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 3e-09
Identities = 52/334 (15%), Positives = 97/334 (29%), Gaps = 105/334 (31%)
Query: 91 LQALFHIPS---FHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPE 147
L+ + +P+ F L + ++ L E G+ A + + E
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFA------------ADDEPTT----PAE 59
Query: 148 LIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLK-----AIPSSNKLDSASKETTP 202
L+ K L ++ +E + + L + + YL+ A+ + L + T
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK--LLQENDTTLV 117
Query: 203 -IYQLFGTYLRTEVTCNSCSHISTQCLFHSRL-DSASKETTPIYQLFG------TY---L 251
+L Y+ + + S L + + + +FG Y L
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSN----SALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 252 R----------TEVTCNSCSHISNLELSLDIRQSSSLDEALGHFF-------------AK 288
R ++ S +S L IR + ++ K
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSEL-----IRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 289 EYLGGDNLYRCEKCGRKVEATKRFSVDKPPNVLRLQLKRF----NYHGLKNSRSVQVPLH 344
+YL + S P + +QL + G
Sbjct: 229 DYL----------------LSIPISC--PLIGV-IQLAHYVVTAKLLGFT---------P 260
Query: 345 LEFGKFMHCRMSHSQLKYKLVSAV-IHHGSSPDS 377
E ++ HSQ LV+AV I S +S
Sbjct: 261 GELRSYLKGATGHSQ---GLVTAVAIAETDSWES 291
Score = 47.4 bits (112), Expect = 7e-06
Identities = 68/449 (15%), Positives = 120/449 (26%), Gaps = 190/449 (42%)
Query: 1 SNDIHS--------------NINSICSTYSKSKLSLNNVSSPPSNERKS-LSSKDSSSNG 45
NDIH+ + Y +++ P + S L + G
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK---RPFDKKSNSALF--RAVGEG 152
Query: 46 NSKCLLPKPKEILYSPNKITLGWQGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLL 105
N++ L + G QG Y L+ L+ + L+
Sbjct: 153 NAQ---------LVA----IFGGQG-----------NTDDYFEE-LRDLYQTY---HVLV 184
Query: 106 NDTEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQ 165
D L+ +TL+ + A +K+ +
Sbjct: 185 GD-----------------LIKFSAETLSELIRTTLDA-------EKV--------FTQG 212
Query: 166 EDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQL--FGTYLRTEVTCNSC--- 220
+ E+L K YL +IP S P+ + Y+ VT
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPIS----------CPLIGVIQLAHYV---VTAKLLGFT 259
Query: 221 -----SHIS--TQCL-----------------FHSRLDSA----------SKETTPIYQL 246
S++ T F + A E P L
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 247 FGTYLRTEVTCN--------SCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYR 298
+ L + N S S+++ ++ + +++S +L
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS------------HLPAG---- 363
Query: 299 CEKCGRKVE-----ATKRFSVDKPPNVLRLQLKRFNYHGLKNS-RSVQVPLHLEFGKFMH 352
++VE K V PP L +GL + R + P L+
Sbjct: 364 -----KQVEISLVNGAKNLVVSGPPQSL---------YGLNLTLRKAKAPSGLD-----Q 404
Query: 353 CRMSHSQLKYKL------VSAVIHHGSSP 375
R+ S+ K K V++ H S
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFH---SH 430
Score = 33.5 bits (76), Expect = 0.16
Identities = 47/319 (14%), Positives = 94/319 (29%), Gaps = 96/319 (30%)
Query: 59 YSPNKITLGWQGRVPAGAGLVNAI--------NTCYLNS--CLQALFHIPSFHNWLLNDT 108
++P ++ +G GLV A+ + +++ + LF I
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG---------- 307
Query: 109 EHQTLCEKQSGYQFECLVCAMRK-TLAHCQAKSGS--AIRPELIIKKLKLIARHLEHHRQ 165
Y L ++ + +L + + +I L ++++ H
Sbjct: 308 -----VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS-NLTQEQVQDYVNKTNSHLP 361
Query: 166 EDSHEFLTYLIEGIQ--------------KSYLKAIPSSNKLDSA----SKETTPIYQLF 207
++ L+ G + L+ + + LD + S+ F
Sbjct: 362 AGKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 208 GTYLRTEVTCNSCSHISTQCLFHSRL----------DSASKETT--------PIYQLF-G 248
L +++ FHS L D + P+Y F G
Sbjct: 421 ---LP----------VASP--FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 249 TYLR---TEVTCNSCSHISNL----ELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEK 301
+ LR ++ I L E + + + LD G L N +
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK---DG 522
Query: 302 CG-RKVEATKRFSVDKPPN 319
G R + A ++D P+
Sbjct: 523 TGVRVIVAG---TLDINPD 538
Score = 30.0 bits (67), Expect = 1.8
Identities = 29/175 (16%), Positives = 51/175 (29%), Gaps = 54/175 (30%)
Query: 3 DIHSNINSICSTYSKSK---LSLNN------VSSPPSNERKSLSS------KDSSSNGNS 47
+ +N S K +SL N VS PP +SL K + +G
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP----QSLYGLNLTLRKAKAPSGLD 403
Query: 48 KCLLPKPKEILYSPNKITLGWQGRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLND 107
+ I +S K+ + +P + P FH+ LL
Sbjct: 404 QS------RIPFSERKLKFSNRF-LPVAS---------------------P-FHSHLLVP 434
Query: 108 TEHQTLCEKQSGYQFECLVCAMRKTLAHCQAKSGSAIR--PELIIKKL-KLIARH 159
+ + ++ + GS +R I +++ I R
Sbjct: 435 ASDL-INKDLVKNNVSFNAKDIQIPVYD--TFDGSDLRVLSGSISERIVDCIIRL 486
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 5e-09
Identities = 73/441 (16%), Positives = 133/441 (30%), Gaps = 139/441 (31%)
Query: 27 SPPSNERKSLSSKDSSSNGN---SKCLLPKPKEI------LYS--PNK-ITLGWQGRVPA 74
P R + +D N N +K + + + L P K + + G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI--DG--VL 159
Query: 75 GAG---LVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRK 131
G+G + A++ C L+ +Q F WL
Sbjct: 160 GSGKTWV--ALDVC-LSYKVQCKMDFKIF--WL--------------------------- 187
Query: 132 TLAHCQAKSGSAIRPELIIKKLKLIARHLE--HHRQEDSHEFLTYLIEGIQ---KSYLKA 186
L +C PE +++ L+ + ++ + D + I IQ + LK+
Sbjct: 188 NLKNCN-------SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 187 IPSSNKL----DSASKETTPIYQLFGTYLRTEVTCNSCS---HISTQCLFHSRLDSASKE 239
P N L + + + + F + +T +S H LD S
Sbjct: 241 KPYENCLLVLLNVQNAK---AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 240 TTPIY--QLFGTYLRTEVTC---NSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGD 294
TP L YL + + LS+ I + S+ + L + D
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLT-TNPRRLSI-I--AESIRDGLATW--------D 345
Query: 295 NL--YRCEKCGRKVEAT----------KRF--------SVDKPPNVL------------R 322
N C+K +E++ K F S P +L
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 323 LQLKRFNYHGL----KNSRSVQVP-LHLEF-GKFMHCRMSHSQL--KYKLVSAVIHHGSS 374
+ + + + + L ++ +P ++LE K + H + Y +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 375 P---DSGHYTCIGSTSSGSYH 392
P D Y+ IG +H
Sbjct: 466 PPYLDQYFYSHIG------HH 480
Score = 46.4 bits (109), Expect = 1e-05
Identities = 52/356 (14%), Positives = 94/356 (26%), Gaps = 109/356 (30%)
Query: 3 DIHSNINSICSTYSKS---KLSLNNVSSPPSNERKSLSSKDSSSNGNSKCLLPK----PK 55
++ I + +T K LS + + + D + K L + P+
Sbjct: 263 NLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 56 EIL-YSPNKITL-G---------WQG-RVPAGAGLVNAINTCY--LNSC-LQALF----- 95
E+L +P ++++ W + L I + L + +F
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 96 -----HIPSFHNWLLNDTEHQTLC---EKQSGYQFECLVCAM-RKTLAHCQAKSGSAIRP 146
HIP+ L +V + + +L Q K + P
Sbjct: 381 FPPSAHIPT-----------ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 147 ELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSASKETTPIYQL 206
+ ++ + HR +++ Y N + + L
Sbjct: 430 SIYLELKVKLENEYALHRS---------IVD----HY-------NIPKTFDSDDLIPPYL 469
Query: 207 FGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGT-YL----------RTEV 255
Y SHI H L + E LF +L
Sbjct: 470 DQ-YF--------YSHIG----HH--LKNI--EHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 256 TCNSCSHISNLELSLD-----IRQSSSLDE----ALGHFFAKEYLGGDNLYRCEKC 302
N+ I N L I + E A+ F K +NL +
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI---EENLICSKYT 565
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling,
linkage specificity, deubiquitinating enzyme, Lys63-
linked, anti-oncogene; 2.8A {Homo sapiens}
Length = 374
Score = 36.7 bits (84), Expect = 0.010
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHC 136
G+ N+CYL+S L LF S + +L + + E S Q E L + L
Sbjct: 11 GIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQ-ELLRTEIVNPL--- 66
Query: 137 QAKSGSAIRPELIIKKLKLIARHLEH----HRQEDSHEFLTYLIEGI 179
+ + I+K K++ + ++D EFL L I
Sbjct: 67 --RIYGYVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHI 111
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.022
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 23/50 (46%)
Query: 32 ERKSLSSKDSSSNGNSKCLLPKPKEILYSPNKITLGWQGRVPAGAGLVNA 81
E+++L +S L K LY+ + PA A + A
Sbjct: 18 EKQALKKLQAS--------L---K--LYADDS--------APALA--IKA 44
Score = 32.6 bits (73), Expect = 0.11
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 8/26 (30%)
Query: 180 QKSYLKAIPSSNKL---DSASKETTP 202
+K LK + +S KL DSA P
Sbjct: 18 EKQALKKLQASLKLYADDSA-----P 38
Score = 27.6 bits (60), Expect = 4.8
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 359 QLKYKLVSAV-IHHGSSPDSGHYTCIGST 386
LK KL +++ ++ + DS I +T
Sbjct: 21 ALK-KLQASLKLY---ADDSAPALAIKAT 45
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 30.0 bits (68), Expect = 0.35
Identities = 5/39 (12%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
C + K+ L+ +H+ +G + + + +
Sbjct: 50 DCEIIEDGKKHILI---LHNCQLGMTGEVSFQAANTKSA 85
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 30.5 bits (68), Expect = 0.40
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 329 NYHGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSS 388
Y K+ V L+ + S L I + D G YTC S+
Sbjct: 45 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL-------TIDGVTRSDQGLYTCAASSGL 97
Query: 389 GS 390
+
Sbjct: 98 MT 99
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 29.6 bits (67), Expect = 0.48
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+ LV I S D+G YTC S +
Sbjct: 53 KYDVVCEGTMAMLV---IRGASLKDAGEYTCEVEASKST 88
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 29.4 bits (66), Expect = 0.56
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
R++ +++ + DSG Y C+ S+ SGS
Sbjct: 54 RTRITGEEVE-------VRDSIPADSGLYACVTSSPSGS 85
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 29.2 bits (66), Expect = 0.60
Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 3/50 (6%)
Query: 341 VPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
V L E R ++ L+ D G Y I +
Sbjct: 46 VELTREDSFKARYRFKKDGKRHILI---FSDVVQEDRGRYQVITNGGQCE 92
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 29.7 bits (67), Expect = 0.70
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGSYH 392
I + D+G YTCI ST SG
Sbjct: 65 QIRYAKLGDTGRYTCIASTPSGEAT 89
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 30.5 bits (68), Expect = 0.73
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 329 NYHGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSS 388
Y K+ V L+ + S L I + D G YTC S+
Sbjct: 142 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL-------TIDGVTRSDQGLYTCAASSGL 194
Query: 389 GS 390
+
Sbjct: 195 MT 196
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 30.0 bits (67), Expect = 0.86
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 364 LVSAVIHHGSSPDSGHYTCIGSTSSGSYH 392
L AV P TC+G H
Sbjct: 163 LSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 30.3 bits (68), Expect = 1.0
Identities = 11/44 (25%), Positives = 13/44 (29%)
Query: 348 GKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSY 391
G+ R S A G + G Y C GS Y
Sbjct: 143 GEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPY 186
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 30.2 bits (68), Expect = 1.1
Identities = 10/44 (22%), Positives = 14/44 (31%)
Query: 348 GKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSY 391
G R+ + + A G + G Y C GS Y
Sbjct: 255 GGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHSPY 298
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 30.4 bits (68), Expect = 1.2
Identities = 13/108 (12%), Positives = 35/108 (32%), Gaps = 9/108 (8%)
Query: 146 PELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLK-----AIPSSNKLDSASKET 200
EL+ K L ++ +E + + L + + YL+ A+ + ++ +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 201 TPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFG 248
+L Y+ + + + + + +FG
Sbjct: 118 K-TKELIKNYIT---ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 29.6 bits (66), Expect = 1.3
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 333 LKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
K+ S+ + FM+ + L+ ++ DSG Y C G+
Sbjct: 140 FKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI---FDPVTAFDSGEYYCQAQNGYGT 194
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 28.5 bits (64), Expect = 1.4
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+ K++L+ + DSG + C S
Sbjct: 55 LLVVKMDGRKHRLI---LPEAKVQDSGEFECRTEGVSAF 90
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 29.5 bits (66), Expect = 1.5
Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 343 LHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSY 391
L E G+ R+ A G + G Y C GS Y
Sbjct: 140 LSRE-GEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHDSPY 187
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 29.5 bits (66), Expect = 1.6
Identities = 5/39 (12%), Positives = 10/39 (25%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+ + + L I+ + D G Y
Sbjct: 49 RVKTGVTGEQIWLQ---INEPTPNDKGKYVMELFDGKTG 84
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 28.5 bits (64), Expect = 1.6
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+ + +L IH S D+G Y+C+ S
Sbjct: 52 RYSLKQDGTRCELQ---IHDLSVADAGEYSCMCGQERTS 87
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 28.1 bits (63), Expect = 1.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
I + D+G YTC+ ++SSG
Sbjct: 65 QIKNLRISDTGTYTCVATSSSGE 87
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 27.7 bits (62), Expect = 2.2
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+SH +KLV I D G YT + + S
Sbjct: 53 RITISHVGRFHKLV---IDDVRPEDEGDYTFVPDGYALS 88
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 27.7 bits (62), Expect = 2.2
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
R+ K+ L+ I + D+ Y+ + + S
Sbjct: 54 RYRIRVEGKKHILI---IEGATKADAAEYSVMTTGGQSS 89
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 27.7 bits (62), Expect = 2.5
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
++ L+ + D+G Y C ++G
Sbjct: 59 RLSFPADGAEHGLL---LTAALPTDAGVYVCRARNAAGE 94
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 27.7 bits (62), Expect = 2.7
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+ + +L I + D+G Y C+ S
Sbjct: 63 RHSLRQDGARCELQ---IRGLVAEDAGEYLCMCGKERTS 98
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 28.6 bits (64), Expect = 2.7
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 345 LEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
L + + ++ ++ L + S D G+Y C G
Sbjct: 59 LPSSNYSNIKIYNTPSASYLE---VTPDSENDFGNYNCTAVNRIGQ 101
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 28.9 bits (65), Expect = 2.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
I + S D G Y C S GS
Sbjct: 251 HILNVDSADIGEYQCKASNDVGS 273
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 28.7 bits (64), Expect = 2.9
Identities = 5/39 (12%), Positives = 10/39 (25%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+ + + L I+ + D G Y
Sbjct: 154 RVKTGVTGEQIWLQ---INEPTPNDKGKYVMELFDGKTG 189
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune
system-transferase complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 351
Score = 29.0 bits (64), Expect = 3.2
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 333 LKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHY 380
+R+V VPL +F+ CR + + L S I S + H+
Sbjct: 303 DPRARAVSVPLGGRVARFLQCRFLFAG-PWLLFSE-ISFISDAAAHHH 348
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 28.8 bits (64), Expect = 3.4
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
I + ++G Y C S +
Sbjct: 607 FIAKITPNNNGTYACFVSNLATG 629
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 27.3 bits (61), Expect = 3.5
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCI-GSTSS 388
+ S L +L I DS YTC G S
Sbjct: 53 KHQPSQEGLTLRLT---ISALEKADSDTYTCDIGQAQS 87
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA
BIND protein; 2.50A {Tetrahymena thermophila}
Length = 172
Score = 28.1 bits (62), Expect = 3.6
Identities = 3/25 (12%), Positives = 7/25 (28%)
Query: 288 KEYLGGDNLYRCEKCGRKVEATKRF 312
+ + CE C + +
Sbjct: 51 SVLKYHGDSFFCESCQQFINPQVHL 75
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 28.7 bits (64), Expect = 3.7
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
I D G Y C+ +G+
Sbjct: 368 RILGVVKSDEGFYQCVAENEAGN 390
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 3.7
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 24/74 (32%)
Query: 236 ASKETTPIY-QLFGTYLRTEVTCNSC-SHISNLELSLDIRQSSSLDEALGHFFAKEYLGG 293
++E+ G L +TC C + + + + G
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKI--------------------VERFSEG 41
Query: 294 DNLYRCEKCGRKVE 307
D C CG +
Sbjct: 42 D--VVCALCGLVLS 53
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 29.0 bits (64), Expect = 3.8
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 329 NYHGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSS 388
Y K+ V L+ + S L I + D G YTC S+
Sbjct: 261 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL-------TIDGVTRSDQGLYTCAASSGL 313
Query: 389 GS 390
+
Sbjct: 314 MT 315
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 28.4 bits (63), Expect = 3.9
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
+ +G+Y+C+ S G
Sbjct: 248 NLDQVDFQHAGNYSCVASNVQGK 270
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 27.3 bits (61), Expect = 3.9
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCI-GSTSS 388
+ +LV + + DSG Y+C G ++
Sbjct: 53 KYSLRQEGAMLELV---VRNLRPQDSGRYSCSFGDQTT 87
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 28.3 bits (63), Expect = 4.0
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
I D G Y C G +
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARG 180
Score = 27.5 bits (61), Expect = 5.6
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
I++ + D+G Y C+ + G+
Sbjct: 65 TIYNANIDDAGIYKCVVTAEDGT 87
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 26.9 bits (60), Expect = 4.2
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
+ + D+G Y C+ +G
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGE 87
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 27.0 bits (60), Expect = 4.3
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
R+ +LV + ++G Y+C S
Sbjct: 56 KVRVEAVGCTRRLV---VQQAGQAEAGEYSCEAGGQQLS 91
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 27.0 bits (60), Expect = 4.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 376 DSGHYTCIGSTSSGS 390
DSG Y C+ S+ SGS
Sbjct: 65 DSGLYACVTSSPSGS 79
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 28.6 bits (64), Expect = 4.3
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
I S D G Y C + G+
Sbjct: 161 EIAPTSDNDFGRYNCTATNHIGT 183
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 28.7 bits (64), Expect = 4.3
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
+ + + G+Y C GS
Sbjct: 776 HVDNIQKTNEGYYLCEAINGIGS 798
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 28.6 bits (64), Expect = 4.4
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+ +S+S+ L ++G YTC +G+
Sbjct: 524 NIWISYSENIATLQ---FSRAEPANAGKYTCQIKNEAGT 559
Score = 27.5 bits (61), Expect = 9.8
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+M LV I+ D G YTC S G+
Sbjct: 51 AYKMQFKNNVASLV---INKVDHSDVGEYTCKAENSVGA 86
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 28.0 bits (62), Expect = 4.8
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
++ D+G Y+C+ S G+
Sbjct: 248 SLNAVDFQDAGIYSCVASNDVGT 270
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 26.9 bits (60), Expect = 4.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
+I +S D+G YTCI + +G
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQ 91
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon,
hyperthermophilic, extremophIle; NMR {Thermococcus
celer} SCOP: g.41.3.1
Length = 57
Score = 25.9 bits (57), Expect = 4.9
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 14/59 (23%)
Query: 247 FGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRK 305
T T++TC C + Q+ + DE F Y+C KCG
Sbjct: 8 LKTLPTTKITCPKCGN---DTAYWWEMQTRAGDEPSTIF-----------YKCTKCGHT 52
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 27.0 bits (60), Expect = 5.1
Identities = 8/39 (20%), Positives = 9/39 (23%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
K L I S D Y C+ S
Sbjct: 62 KYIFESIGAKRTLT---ISQCSLADDAAYQCVVGGEKCS 97
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 26.6 bits (59), Expect = 5.7
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+ + KY LV + + D+G +
Sbjct: 55 RFQATRQGRKYILV---VREAAPSDAGEVVFSVRGLTSK 90
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 26.5 bits (59), Expect = 5.8
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
++ +KLV I + + D G Y + +
Sbjct: 51 RLKVVQKGRIHKLV---IANALTEDEGDYVFAPDAYNVT 86
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 27.5 bits (61), Expect = 5.9
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 369 IHHGSSPDSGHYTCIGSTSSGSY 391
I + DSG Y C G S +
Sbjct: 141 IPKATLKDSGSYFCRGLVGSKNV 163
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 28.0 bits (62), Expect = 6.1
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 352 HCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+ K K+ D G Y+C + + G
Sbjct: 48 RLEVESKGNKTKMT---FKDLGMDDLGIYSCDVTDTDGI 83
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 27.4 bits (61), Expect = 7.0
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
I + + D G Y C G +
Sbjct: 154 QILNINKSDEGIYRCEGRVEARG 176
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 27.5 bits (61), Expect = 7.1
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
I++ + D+G Y C + + G
Sbjct: 63 TIYNANIEDAGIYRCQATDAKGQ 85
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 27.5 bits (60), Expect = 7.4
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGSYHY 393
+IH+ DSG Y C
Sbjct: 185 IIHNPELEDSGRYDCYVHYDDVRIKN 210
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 27.4 bits (61), Expect = 7.5
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
+ D+G Y G
Sbjct: 164 FPNGVERKDAGFYVVCAKNRFGI 186
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 27.6 bits (61), Expect = 7.8
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
V + D GHY C T +G
Sbjct: 65 VFLRPQASDEGHYQCFAETPAGV 87
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 27.1 bits (60), Expect = 7.8
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
I D G Y C+ + S+G+
Sbjct: 170 QIEQSEESDQGKYECVATNSAGT 192
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 27.5 bits (61), Expect = 7.9
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
I++ + D+G Y C+ + G+
Sbjct: 65 TIYNANIDDAGIYKCVVTAEDGT 87
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 27.2 bits (60), Expect = 8.0
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
I D+G Y C+ +
Sbjct: 71 RITSLQLSDTGQYQCLVFLGHQT 93
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 27.1 bits (60), Expect = 8.2
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
+I + D+G Y C+G+ G
Sbjct: 168 MITYTRKSDAGKYVCVGTNMVGE 190
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 27.1 bits (60), Expect = 8.3
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
+ D+G Y C +
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGET 85
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 27.4 bits (60), Expect = 8.6
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
I DSG + C + + GS
Sbjct: 255 TISSARVDDSGVFMCYANNTFGS 277
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 26.8 bits (59), Expect = 9.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 369 IHHGSSPDSGHYTCIGSTSSGSY 391
I + + DSG Y C G Y
Sbjct: 138 ITNATVEDSGTYYCTGKVWQLDY 160
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 26.8 bits (59), Expect = 9.7
Identities = 4/23 (17%), Positives = 6/23 (26%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
+ D G YT +
Sbjct: 64 FMEKLQDEDEGTYTFQLQDGKAT 86
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel
beta-sheets, transferase; NMR {Saccharomyces cerevisiae}
SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A*
1k2m_A* 1k2n_A*
Length = 158
Score = 26.7 bits (58), Expect = 9.9
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 1 SNDIHSNINSI----CSTYSKSKLSLNNVSSPPSNERKSLSSKDSSSNG---NSKCLLPK 53
+ N + C + K ++ P+ + + +N N+ ++
Sbjct: 36 DCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNVSYLNNNRMIQG 95
Query: 54 PKEILYSPNKITLGWQGR 71
K +L ++I + W
Sbjct: 96 TKFLLQDGDEIKIIWDKN 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.395
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,730,036
Number of extensions: 316770
Number of successful extensions: 1254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1193
Number of HSP's successfully gapped: 116
Length of query: 397
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 301
Effective length of database: 4,021,377
Effective search space: 1210434477
Effective search space used: 1210434477
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)