RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1713
(397 letters)
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 141 bits (355), Expect = 3e-39
Identities = 72/339 (21%), Positives = 117/339 (34%), Gaps = 34/339 (10%)
Query: 70 GRVPAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAM 129
G PA GL N NTCY+NS LQ L + P ++ + + +
Sbjct: 10 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 69
Query: 130 RKTLAHCQAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPS 189
+ I P+ + I + Q+DS E L +L++G+ + KA
Sbjct: 70 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 129
Query: 190 SNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGT 249
+ N+ + H+ + I LF
Sbjct: 130 KRYKEE----------------------NNDHLDDFKAAEHAWQKHKQLNESIIVALFQG 167
Query: 250 YLRTEVTCNSCSHI-------SNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKC 302
++ V C +C L L L +L + L F +E L +N + C C
Sbjct: 168 QFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHC 227
Query: 303 GRKVEATKRFSVDKPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKFMHCRMSHSQ--- 359
+ ++ K+ + K P VL + LKRF+Y G + + + +
Sbjct: 228 RARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNL 287
Query: 360 LKYKLVSAVIHHGSSPDSGHYTC-IGSTSSGSYHYFDDE 397
KY L S H+G D GHYT + + + FDD
Sbjct: 288 KKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDH 325
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 118 bits (296), Expect = 7e-31
Identities = 70/335 (20%), Positives = 126/335 (37%), Gaps = 38/335 (11%)
Query: 76 AGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAH 135
AGL N NTC++NS LQ L + ++ L + L + + LV K +
Sbjct: 4 AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHT--ALVEEFAKLIQT 61
Query: 136 CQAKSGSAIR-PELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLD 194
S + + P +++ A + Q+D+ EFL +L++G+ + + + K +
Sbjct: 62 IWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLH-NEVNRVTLRPKSN 120
Query: 195 SASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTE 254
+ + P + R + I LF L++
Sbjct: 121 PENLDHLPDDEKGRQMWRKYLEREDS---------------------RIGDLFVGQLKSS 159
Query: 255 VTCNSCSHISNLELSL---------DIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRK 305
+TC C + S + +L + + F ++ L GD C +C +
Sbjct: 160 LTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGR 219
Query: 306 VEATKRFSVDKPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKFMHCRMSHS--QLKYK 363
K+FS+ + P +L L LKRF+ ++ S+ + S + Y
Sbjct: 220 KRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAVYN 279
Query: 364 LVSAVIHHGSSPDSGHYTC-IGSTSSGSYHYFDDE 397
L + H G + GHYT S +G +H F+D
Sbjct: 280 LYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDS 313
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 113 bits (283), Expect = 8e-29
Identities = 60/356 (16%), Positives = 112/356 (31%), Gaps = 41/356 (11%)
Query: 76 AGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAH 135
GL N NTCY+N+ +Q + +P + L + + + + A+R L
Sbjct: 5 CGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMA--SAQYITAALRD-LFD 61
Query: 136 CQAKSGSAIRPELIIKKLKLIARHLEH------HRQEDSHEFLTYLIEGIQKSYLKAIPS 189
K+ S+I P ++++ L + + Q+D++E ++ +Q+
Sbjct: 62 SMDKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDD 121
Query: 190 SNKLDSAS--------KETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETT 241
S K +S K+ + I Q FG T + C ++L +
Sbjct: 122 SVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQ 181
Query: 242 PIYQLFGT-----YLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNL 296
+ LF + + S I + + F +
Sbjct: 182 EVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKES--- 238
Query: 297 YRCEKCGRKVEATKRF--------SVDKPPNVLRLQLKRFNYHGLKNSR-------SVQV 341
K + V+ + + R + K + S Q
Sbjct: 239 -VNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQK 297
Query: 342 PLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGSYHYFDDE 397
+ E F S++ Y L + + H G S SGHY + FDD+
Sbjct: 298 EVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDD 353
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 92.5 bits (228), Expect = 1e-21
Identities = 60/327 (18%), Positives = 100/327 (30%), Gaps = 64/327 (19%)
Query: 77 GLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKTLAHC 136
GL N TCY+NS LQ LF + + + + A+++
Sbjct: 8 GLKNQGATCYMNSLLQTLFFTNQLRKAVYM-------MPTEGDDSSKSVPLALQRVFYEL 60
Query: 137 QAKSGSAIRPELIIKKLKLIARHLEHHRQEDSHEFLTYLIEGIQKSYLKAIPSSNKLDSA 196
Q S + + + K L+ Q D E L++ ++
Sbjct: 61 Q-HSDKPVGTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKG----------- 106
Query: 197 SKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQLFGTYLRTEVT 256
+ I +LF + + + C + S + + + +
Sbjct: 107 TCVEGTIPKLFRGKMVSYIQCKEVDYRSDR-----------------REDYYDIQLSIKG 149
Query: 257 CNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKVEATKRFSVDK 316
+ + + A E L GDN Y + G EA K
Sbjct: 150 KKNIFE------------------SFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLT 190
Query: 317 PPNVLRLQLKRFNYHGLKNSR-----SVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHH 371
P VL LQL RF Y + + P L +F+ Y L + ++H
Sbjct: 191 LPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHS 250
Query: 372 GSSPDSGHYTCIG-STSSGSYHYFDDE 397
G + GHY G + FDD+
Sbjct: 251 GDN-HGGHYVVYLNPKGDGKWCKFDDD 276
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 86.0 bits (211), Expect = 4e-19
Identities = 45/318 (14%), Positives = 97/318 (30%), Gaps = 67/318 (21%)
Query: 76 AGLVNAINTCYLNSCLQALFHIPSFHNWLLN--DTEHQTLCEKQSGYQFECLVCAMRKTL 133
G N NTCYLN+ LQAL+ + + +LN ++ + Q + +V M++
Sbjct: 7 VGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCF 66
Query: 134 AHCQAKSGSAIRPELIIKKLKLIA-------RHLEHHRQEDSHEFLTYLIEGIQKSYLKA 186
+ Q KS ++ P +++ L+ ++Q+D+ E T L + +
Sbjct: 67 ENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVF--- 123
Query: 187 IPSSNKLDSASKETTPIYQLFGTYLRTEVTCNSCSHISTQCLFHSRLDSASKETTPIYQL 246
+ F +T + + +
Sbjct: 124 -------------GDKFSEDFRIQFKTTIKDTANDND----------------------- 147
Query: 247 FGTYLRTEVTCNSCSHISNLELSLDIRQSSSLDEALGHFFAKEYLGGDNLYRCEKCGRKV 306
+ S+ +L I +++ E + R + G
Sbjct: 148 ----------ITVKENESDSKLQCHISGTTNFMRNGLLEGLNEKI----EKRSDLTGANS 193
Query: 307 EATKRFSVDKPPNVLRLQLKRFNYHGLKNSR-----SVQVPLHLEFGKFMHCRMSHSQLK 361
+ + + P L +Q RF + N + V P L+ + + ++K
Sbjct: 194 IYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVK 253
Query: 362 YKLVSAVIHHGSSPDSGH 379
+ + +
Sbjct: 254 VRDELRKVEKEKNEKERE 271
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 28.2 bits (62), Expect = 0.44
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 348 GKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
G R+ K+ L+ I + D+ Y+ + + S
Sbjct: 43 GPKSRYRIRVEGKKHILI---IEGATKADAAEYSVMTTGGQSS 82
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 28.5 bits (62), Expect = 0.71
Identities = 9/76 (11%), Positives = 16/76 (21%)
Query: 315 DKPPNVLRLQLKRFNYHGLKNSRSVQVPLHLEFGKFMHCRMSHSQLKYKLVSAVIHHGSS 374
+ + F+ + + V+ I +
Sbjct: 31 NATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF 90
Query: 375 PDSGHYTCIGSTSSGS 390
D G YTC S
Sbjct: 91 SDEGGYTCFFRDHSYQ 106
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 27.5 bits (60), Expect = 1.0
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
I G YT + GS
Sbjct: 59 TILAARQEHCGCYTLLVENKLGS 81
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 27.2 bits (59), Expect = 1.2
Identities = 4/40 (10%), Positives = 11/40 (27%)
Query: 351 MHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+ ++ + + D+G Y C +
Sbjct: 40 LDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGET 79
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 27.2 bits (59), Expect = 1.3
Identities = 6/41 (14%), Positives = 12/41 (29%)
Query: 350 FMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+ L S I++ +S D Y + +
Sbjct: 45 AFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDT 85
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 26.3 bits (57), Expect = 2.1
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
VI + D G+Y C + G
Sbjct: 57 VIKGVKNGDKGYYGCRATNEHGD 79
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic
disease virus [TaxId: 11976]}
Length = 497
Score = 28.1 bits (62), Expect = 2.2
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 73 PAGAGLVNAINTCYLNSCLQALFHIPSFHNWLLNDTEHQTLCEKQSGYQFECLVCAMRKT 132
+ A H F N++ + E Q + S Y ++ RK
Sbjct: 436 ETYDLAKEERGVQLEELQVAAAAHGQEFFNFVCRELERQQAYTQFSVYSYDAA----RKI 491
Query: 133 LA 134
LA
Sbjct: 492 LA 493
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR
{Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 26.3 bits (57), Expect = 2.3
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 351 MHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
R+ +++ + S ++ D G+YTC+ GS
Sbjct: 48 QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 87
>d1gjja1 a.140.1.1 (A:1-50) Thymopoietin, LAP2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 50
Score = 25.2 bits (55), Expect = 2.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 17 KSKLSLNNVSSPPSNERK 34
KS+L NNV+ P +RK
Sbjct: 17 KSELVANNVTLPAGEQRK 34
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules
[TaxId: 9606]}
Length = 91
Score = 26.4 bits (57), Expect = 2.5
Identities = 6/41 (14%), Positives = 11/41 (26%)
Query: 350 FMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+ I + D G+Y+ + S G
Sbjct: 40 LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK 80
>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human
(Homo sapiens), III [TaxId: 9606]}
Length = 84
Score = 26.0 bits (56), Expect = 2.6
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 351 MHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+ S + + S I + DSG Y C + S+ S
Sbjct: 38 TQWFHNESLISSQASSYFIDAATVNDSGEYRCQTNLSTLS 77
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId:
9103]}
Length = 102
Score = 26.0 bits (56), Expect = 3.1
Identities = 8/40 (20%), Positives = 9/40 (22%)
Query: 351 MHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+ S I D YTC S G
Sbjct: 51 ESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 90
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules
[TaxId: 9606]}
Length = 98
Score = 26.0 bits (56), Expect = 3.2
Identities = 6/41 (14%), Positives = 11/41 (26%)
Query: 350 FMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
R+ + + VI + DS +G
Sbjct: 46 ERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGE 86
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 26.1 bits (56), Expect = 3.8
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
+ ++ DSG Y C G+
Sbjct: 70 IFDPVTAFDSGEYYCQAQNGYGT 92
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 25.6 bits (55), Expect = 4.3
Identities = 7/41 (17%), Positives = 10/41 (24%)
Query: 350 FMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
M + + I S D Y C+ S
Sbjct: 47 QMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCS 87
>d1dxga_ g.41.5.2 (A:) Desulforedoxin {Desulfovibrio gigas [TaxId:
879]}
Length = 36
Score = 24.0 bits (52), Expect = 4.5
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 296 LYRCEKCGRKVE 307
+Y+CE CG+ V+
Sbjct: 6 VYKCELCGQVVK 17
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 25.6 bits (55), Expect = 4.8
Identities = 7/44 (15%), Positives = 12/44 (27%)
Query: 347 FGKFMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
G+ + + + I D G Y C G +
Sbjct: 38 KGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 81
>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 25.0 bits (53), Expect = 5.9
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 350 FMHCRMSHSQLKYKLVSAVIHHGSSPDSGHYTCIGSTSSGS 390
+ S + S I + DSG Y C + S
Sbjct: 33 STKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNES 73
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 25.3 bits (54), Expect = 6.9
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 368 VIHHGSSPDSGHYTCIGSTSSGS 390
I + + D+G YTC+ S G
Sbjct: 77 YIRNVTFEDAGEYTCLAGNSIGI 99
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 25.4 bits (54), Expect = 7.3
Identities = 5/22 (22%), Positives = 6/22 (27%)
Query: 369 IHHGSSPDSGHYTCIGSTSSGS 390
+ D G YT G
Sbjct: 98 VEGAEKEDEGVYTVTVKNPVGE 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.395
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,433,281
Number of extensions: 64707
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 32
Length of query: 397
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 310
Effective length of database: 1,213,086
Effective search space: 376056660
Effective search space used: 376056660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)