BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17133
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 10 IDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTI 69
IDF E + T + + L++ ET V I ++ V G I R I
Sbjct: 19 IDFHPTEPWVLTTLY-SGRVELWNYETQVEVRSIQVTETPVRAGKFIAR------KNWII 71
Query: 70 TAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
DD IR F+ +G+ V AH D + S+AV P Y+LSG+
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 20 MVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRF 79
M+TA D+ ++D +T V ++ VS V HPTLP+ I+ +D ++
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA------VFHPTLPIIISGSEDGTLKI 254
Query: 80 FDNVSGKLVHSMVAHLDAVTSLAVDPQGL--YILSG 113
+++ + K+ ++ L+ +A P G YI SG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 55 GINRVVCHPT--LPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
G+N V +P P ITA DD I+ +D + V ++ H+ V+ P I+S
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 113 GT 114
G+
Sbjct: 246 GS 247
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 10 IDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTI 69
IDF E + T + + L++ ET V I ++ V G I R I
Sbjct: 19 IDFHPTEPWVLTTLY-SGRVELWNYETQVEVRSIQVTETPVRAGKFIAR------KNWII 71
Query: 70 TAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
DD IR F+ +G+ V AH D + S+AV P Y+LSG+
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 20 MVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRF 79
M+TA D+ ++D +T V ++ VS V HPTLP+ I+ +D ++
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA------VFHPTLPIIISGSEDGTLKI 254
Query: 80 FDNVSGKLVHSMVAHLDAVTSLAVDPQGL--YILSG 113
+++ + K+ ++ L+ +A P G YI SG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 55 GINRVVCHPT--LPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
G+N V +P P ITA DD I+ +D + V ++ H+ V+ P I+S
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 113 GT 114
G+
Sbjct: 246 GS 247
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S +V+A D+ ++D+ +GK + + G N V C +P L ++
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGS 129
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D +R +D +GK + ++ AH D V+++ + G I+S +Y
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 115 Y 115
+
Sbjct: 130 F 130
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S +V+A D+ ++D+ +GK + + G N V C +P L ++
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGS 132
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D +R +D +GK + ++ AH D V+++ + G I+S +Y
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 115 Y 115
+
Sbjct: 133 F 133
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S +V+A D+ ++D+ +GK + + G N V C +P L ++
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGS 143
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D +R +D +GK + ++ AH D V+++ + G I+S +Y
Sbjct: 144 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 186
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 84 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 143
Query: 115 Y 115
+
Sbjct: 144 F 144
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S +V+A D+ ++D+ +GK + + G N V C +P L ++
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGS 129
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D +R +D +GK + ++ AH D V+++ + G I+S +Y
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 115 Y 115
+
Sbjct: 130 F 130
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S +V+A D+ ++D+ +GK + + G N V C +P L ++
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGS 129
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D +R +D +GK + ++ AH D V+++ + G I+S +Y
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 115 Y 115
+
Sbjct: 130 F 130
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S +V+A D+ ++D+ +GK + + G N V C +P L ++
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGS 150
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D +R +D +GK + ++ AH D V+++ + G I+S +Y
Sbjct: 151 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 193
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 91 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Query: 115 Y 115
+
Sbjct: 151 F 151
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S +V+A D+ ++D+ +GK + + G N V C +P L ++
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGS 131
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D +R +D +GK + ++ AH D V+++ + G I+S +Y
Sbjct: 132 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 174
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 72 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 131
Query: 115 Y 115
+
Sbjct: 132 F 132
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S +V+A D+ ++D+ +GK + + G N V C +P L ++
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGS 127
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D +R +D +GK + ++ AH D V+++ + G I+S +Y
Sbjct: 128 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 170
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 68 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 127
Query: 115 Y 115
+
Sbjct: 128 F 128
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S +V+A D+ ++D+ +GK + + G N V C +P L ++
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGS 132
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D +R +D +GK + ++ AH D V+++ + G I+S +Y
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 115 Y 115
+
Sbjct: 133 F 133
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S +V+A D+ ++D+ +GK + + G N V C +P L ++
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGS 132
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D +R +D +GK + ++ AH D V+++ + G I+S +Y
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 115 Y 115
+
Sbjct: 133 F 133
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S +V+A D+ ++D+ +GK + + G N V C +P L ++
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGS 125
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D +R +D +GK + ++ AH D V+++ + G I+S +Y
Sbjct: 126 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 168
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 66 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
Query: 115 Y 115
+
Sbjct: 126 F 126
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S +V+A D+ ++D+ +GK + + G N V C +P L ++
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGS 126
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D +R +D +GK + ++ AH D V+++ + G I+S +Y
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 115 Y 115
+
Sbjct: 127 F 127
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S +V+A D+ ++D+ +GK + + G N V C +P L ++
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGS 148
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D +R +D +GK + ++ AH D V+++ + G I+S +Y
Sbjct: 149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 191
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 89 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 115 Y 115
+
Sbjct: 149 F 149
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S +V+A D+ ++D+ +GK + + G N V C +P L ++
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGS 122
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D +R +D +GK + ++ AH D V+++ + G I+S +Y
Sbjct: 123 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 165
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 63 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
Query: 115 Y 115
+
Sbjct: 123 F 123
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S +V+A D+ ++D+ +GK + + G N V C +P L ++
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGS 126
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D +R +D +GK + ++ AH D V+++ + G I+S +Y
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 115 Y 115
+
Sbjct: 127 F 127
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 10 IDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTI 69
IDF E + T + L++ ET V I ++ V G I R I
Sbjct: 19 IDFHPTEPWVLTTLYSGRV-ELWNYETQVEVRSIQVTETPVRAGKFIARK------NWII 71
Query: 70 TAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
DD IR F+ +G+ V AH D + S+AV P Y+LSG+
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 20 MVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRF 79
M+TA D+ ++D +T V ++ VS V HPTLP+ I+ +D ++
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA------VFHPTLPIIISGSEDGTLKI 254
Query: 80 FDNVSGKLVHSMVAHLDAVTSLAVDPQGL--YILSG 113
+++ + K+ ++ L+ +A P G YI SG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 63 PTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
P P ITA DD I+ +D + V ++ H+ V+ P I+SG+
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 20 MVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRF 79
M+TA D+ ++D +T V ++ VS V HPTLP+ I+ +D ++
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA------VFHPTLPIIISGSEDGTLKI 254
Query: 80 FDNVSGKLVHSMVAHLDAVTSLAVDPQGL--YILSG 113
+++ + K+ ++ L+ +A P G YI SG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 69 ITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
I DD IR F+ +G+ V AH D + S+AV P Y+LSG+
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 63 PTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
P P ITA DD I+ +D + V ++ H+ V+ P I+SG+
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
+ RV+ HP + ++A +D I+ +D +G ++ H D+V ++ D G + S
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 167
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 17/101 (16%)
Query: 14 RDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHD 73
RD++ KM +D+ TG ++ + V G V+ H ++ D
Sbjct: 316 RDKTIKM-----------WDVSTGMCLMTLVGHDNWVRG------VLFHSGGKFILSCAD 358
Query: 74 DRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
D+ +R +D + + + ++ AH VTSL Y+++G+
Sbjct: 359 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 115 Y 115
+
Sbjct: 130 F 130
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ V L ++A DD+ ++ +D SGK + ++ H + V +PQ I+SG+
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 115 Y 115
+
Sbjct: 130 F 130
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
G+ V TLP+ ++ D HIR +D +GK + S+ A +LA P Y+ +GT
Sbjct: 82 GVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT 141
Query: 115 Y 115
+
Sbjct: 142 H 142
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 31 LFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHS 90
+F +E+GK +D+ G I + P + D I FD +GKL+H+
Sbjct: 148 IFGVESGKKEYSLDTR------GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 201
Query: 91 MVAHLDAVTSLAVDPQGLYILSGT 114
+ H + SL P +++ +
Sbjct: 202 LEGHAMPIRSLTFSPDSQLLVTAS 225
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 31 LFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHS 90
+FD+ TGK + ++ I + P L +TA DD +I+ +D L +
Sbjct: 190 IFDIATGKLLHTLEGHAMP------IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT 243
Query: 91 MVAHLDAVTSLAVDP 105
+ H V ++A P
Sbjct: 244 LSGHASWVLNVAFCP 258
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 31 LFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHS 90
L+DLE GK + ID+ G + P T + F SGK +S
Sbjct: 106 LWDLENGKQIKSIDA------GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 159
Query: 91 MVAHLDAVTSLAVDPQGLYILSG 113
+ + S+A P G Y+ SG
Sbjct: 160 LDTRGKFILSIAYSPDGKYLASG 182
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 25 DNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRFFDNVS 84
D++ C L+DL + V I S + + G ++ + + L ++D I +D +
Sbjct: 260 DDATCRLYDLRADREVA-IYSKESIIFGASSVDFSL---SGRLLFAGYNDYTINVWDVLK 315
Query: 85 GKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
G V + H + V++L V P G SG++
Sbjct: 316 GSRVSILFGHENRVSTLRVSPDGTAFCSGSW 346
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 15 DESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLP-----LTI 69
+ +++TA + C L+D+E+G Q S G V+C P +
Sbjct: 164 NSDMQILTASGDGTCALWDVESG---------QLLQSFHGHGADVLCLDLAPSETGNTFV 214
Query: 70 TAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
+ D+ +D SG+ V + H V S+ P G SG+
Sbjct: 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS 259
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 3 YNGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPV 40
+ G +S +V D+ T+++T + CVL+D+ TG+ +
Sbjct: 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI 193
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
+N V P +A DD+ ++ + N +G+L+ ++ H +V +A P G I S +
Sbjct: 265 VNGVAFRPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 322
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 59 VVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
V P +A DD+ ++ + N +G+L+ ++ H +V +A P G I S +
Sbjct: 63 VAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 117
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 59 VVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
V P +A DD+ ++ + N +G+L+ ++ H +V +A P G I S +
Sbjct: 186 VAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 240
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 59 VVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
V P +A DD+ ++ + N +G+L+ ++ H +V +A P G I S +
Sbjct: 350 VAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 404
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 59 VVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
V P +A DD+ ++ + N +G+L+ ++ H +V +A P G I S +
Sbjct: 473 VAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 59 VVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
V P +A DD+ ++ + N +G+L+ ++ H +V +A P G I S +
Sbjct: 227 VAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 59 VVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
V P +A DD+ ++ + N +G+L+ ++ H +V +A P G I S +
Sbjct: 22 VAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 76
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 59 VVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
V P +A DD+ ++ + N +G+L+ ++ H +V +A P G I S +
Sbjct: 104 VAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 158
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 59 VVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
V P +A DD+ ++ + N +G+L+ ++ H +V +A P G I S +
Sbjct: 145 VAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 199
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 59 VVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
V P +A DD+ ++ + N +G+L+ ++ H +V +A P G I S +
Sbjct: 514 VAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 568
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 59 VVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
V P +A DD+ ++ + N +G+L+ ++ H +V +A P G I S +
Sbjct: 432 VAFSPDDQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 486
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 50 VSGGGGINRVVC---HPTL--PLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVD 104
+S G + V C P+L P+ ++ D ++ +D +G+LV + H + VTS+ V
Sbjct: 146 LSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVS 205
Query: 105 PQG 107
P G
Sbjct: 206 PDG 208
>pdb|3VDI|A Chain A, Structure Of The Fmo Protein From Pelodictyon Phaeum
Length = 367
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 41 VRIDSSQFGVS--GGGGINRVVCHPTLPL 67
V++D + GVS GGG+ R++ HP +PL
Sbjct: 268 VKVDGNLPGVSRDAGGGLRRILNHPLIPL 296
>pdb|3EOJ|A Chain A, Fmo Protein From Prosthecochloris Aestuarii 2k At 1.3a
Resolution
Length = 366
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 41 VRIDSSQFGVS--GGGGINRVVCHPTLPL 67
V++D + GVS GGG+ R++ HP +PL
Sbjct: 267 VKVDGNLPGVSRDAGGGLRRILNHPLIPL 295
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 69 ITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
++A D+ +R +D +G+ V H V S+ +D + I+SG+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGS 126
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 69 ITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
++A D+ +R +D +G+ V H V S+ +D + I+SG+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 58 RVVC-HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
R VC P T +DR IR +D + K+V + H + SL P G ++SG+
Sbjct: 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 13/100 (13%)
Query: 28 ACVLFDLETGKPVVRIDS-SQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRFFD--NV- 83
A ++D ETG V R+DS ++ G + VV ++ DR ++ ++ N
Sbjct: 230 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289
Query: 84 ---------SGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
SG + + H D V S+A YILSG+
Sbjct: 290 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 329
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 69 ITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
++A D+ +R +D +G+ V H V S+ +D + I+SG+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 69 ITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
++A D+ +R +D +G+ V H V S+ +D + I+SG+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 69 ITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
++A D+ +R +D +G+ V H V S+ +D + I+SG+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 69 ITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
++A D+ +R +D +G+ V H V S+ +D + I+SG+
Sbjct: 75 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 120
>pdb|3ENI|A Chain A, Crystal Structure Of The Fenna-Matthews-Olson Protein From
Chlorobaculum Tepidum
pdb|3ENI|C Chain C, Crystal Structure Of The Fenna-Matthews-Olson Protein From
Chlorobaculum Tepidum
Length = 365
Score = 28.9 bits (63), Expect = 0.67, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 41 VRIDSSQFGVS--GGGGINRVVCHPTLPL 67
V++D GVS GGG+ R++ HP +PL
Sbjct: 266 VKVDGEFPGVSVDAGGGLRRILNHPLIPL 294
>pdb|1KSA|A Chain A, Crystal Structure Of The Bacteriochlorophyll A Protein
From Chlorobium Tepidum
pdb|1KSA|B Chain B, Crystal Structure Of The Bacteriochlorophyll A Protein
From Chlorobium Tepidum
pdb|3BSD|A Chain A, Light Harvesting Protein From Rc Of Chlorobium Tepidum
Length = 366
Score = 28.9 bits (63), Expect = 0.67, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 41 VRIDSSQFGVS--GGGGINRVVCHPTLPL 67
V++D GVS GGG+ R++ HP +PL
Sbjct: 267 VKVDGEFPGVSVDAGGGLRRILNHPLIPL 295
>pdb|3CZU|B Chain B, Crystal Structure Of The Human Ephrin A2- Ephrin A1
Complex
Length = 182
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 69 ITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTS-LAVD 104
I H+DR +R VSGK+ HS AH++ LA D
Sbjct: 144 IHQHEDRCLRLKVTVSGKITHSPQAHVNPQEKRLAAD 180
>pdb|3MBW|B Chain B, Crystal Structure Of The Human Ephrin A2 Lbd And Crd
Domains In Complex With Ephrin A1
Length = 181
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 69 ITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTS-LAVD 104
I H+DR +R VSGK+ HS AH++ LA D
Sbjct: 143 IHQHEDRCLRLKVTVSGKITHSPQAHVNPQEKRLAAD 179
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 77 IRFFDNV-SGKLVHSMVAHLDAVTSLAVDPQ 106
++ +D V SGKLV MV++L+ + S + PQ
Sbjct: 436 MKIYDQVRSGKLVGGMVSYLNDLPSQRIQPQ 466
>pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2C31|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex
With The Cofactor Derivative Thiamin-2-Thiazolone
Diphosphate And Adenosine Diphosphate
pdb|2JI6|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI6|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp And Oxalyl-Coa
pdb|2JI7|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI7|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase With Covalent
Reaction Intermediate
pdb|2JI8|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI8|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Formyl-Coa
pdb|2JI9|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JI9|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With 3-Deaza-Thdp
pdb|2JIB|A Chain A, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
pdb|2JIB|B Chain B, X-Ray Structure Of Oxalyl-Coa Decarboxylase In Complex
With Coenzyme-A
Length = 568
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 15 DESTKMVTAFDNSACVLFDLETGKPVVRID-SSQFGVSGGGGINRVVCHPTLPLTI 69
D T V CV TGKPV+ ++ S FG SG +C LP+T+
Sbjct: 421 DSGTWGVMGIGMGYCVAAAAVTGKPVIAVEGDSAFGFSGME--LETICRYNLPVTV 474
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 17 STKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTI--TAHDD 74
S +++A D+ L+D+ G +I ++ +G + V L ++ + DD
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 75 RHIRFFD---NVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
+ + +D N + K H + AH V L+ +P +IL+
Sbjct: 252 QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 17 STKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTI--TAHDD 74
S +++A D+ L+D+ G +I ++ +G + V L ++ + DD
Sbjct: 192 SGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 75 RHIRFFD---NVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
+ + +D N + K H + AH V L+ +P +IL+
Sbjct: 252 QKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 70 TAHDDRHIRFFDNVSGKLVHSMVAHLDAV 98
T D+ ++ +D+ +GKLVH+ H + V
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQV 709
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 70 TAHDDRHIRFFDNVSGKLVHSMVAHLDAV 98
T D+ ++ +D+ +GKLVH+ H + V
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQV 702
>pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 32 FDLETGKP-VVRIDSSQFGVSGGG 54
FD +TG V+R+DS+Q G + GG
Sbjct: 18 FDSKTGAHFVIRLDSTQLGPAAGG 41
>pdb|3A0F|A Chain A, The Crystal Structure Of Geotrichum Sp. M128 Xyloglucanase
Length = 763
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 50 VSGGGGINRVVCHPTLPLTITAHDDRHIRF--------FDNVSGKLVHSMV----AHLDA 97
+SGGG I+ +V HPT I A D + ++ ++ ++++ + A+L
Sbjct: 17 ISGGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLG 76
Query: 98 VTSLAVDPQG---LYILSGTY 115
S+A+DP LY+ G Y
Sbjct: 77 TESIALDPHNPDRLYLAQGDY 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,558,056
Number of Sequences: 62578
Number of extensions: 133629
Number of successful extensions: 400
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 114
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)