BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17133
(116 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ERG2|STRN3_MOUSE Striatin-3 OS=Mus musculus GN=Strn3 PE=1 SV=1
Length = 796
Score = 144 bits (362), Expect = 2e-34, Method: Composition-based stats.
Identities = 64/113 (56%), Positives = 88/113 (77%), Gaps = 1/113 (0%)
Query: 4 NGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSS-QFGVSGGGGINRVVCH 62
+G PTS+DF+ + MVT+F+ + V++DLET + +V + S G+ INRVV H
Sbjct: 630 HGIPTSVDFIGCDPAHMVTSFNTGSAVIYDLETSQSLVMLSSQVDSGLQSSNHINRVVSH 689
Query: 63 PTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
PTLP+TITAH+DRHI+FFDN +GK++HSMVAHLDAVTSLAVDP G+Y++SG++
Sbjct: 690 PTLPVTITAHEDRHIKFFDNKTGKMIHSMVAHLDAVTSLAVDPNGIYLMSGSH 742
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFD-----------NVSGKLVHSMVAHLDAVTSLAV 103
G+ + HP P+ +TA +D ++ ++ ++ + +++ AH+ V SLA+
Sbjct: 481 GVRALAFHPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHIGPVLSLAI 540
Query: 104 DPQGLYILSG 113
G SG
Sbjct: 541 SSNGEQCFSG 550
>sp|Q13033|STRN3_HUMAN Striatin-3 OS=Homo sapiens GN=STRN3 PE=1 SV=3
Length = 797
Score = 143 bits (361), Expect = 3e-34, Method: Composition-based stats.
Identities = 67/114 (58%), Positives = 90/114 (78%), Gaps = 3/114 (2%)
Query: 4 NGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQF--GVSGGGGINRVVC 61
+G PTS+DF+ + MVT+F+ + V++DLET + +V I SSQ G+ INRVV
Sbjct: 631 HGIPTSVDFIGCDPAHMVTSFNTGSAVIYDLETSQSLV-ILSSQVDSGLQSNNHINRVVS 689
Query: 62 HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
HPTLP+TITAH+DRHI+FFDN +GK++HSMVAHLDAVTSLAVDP G+Y++SG++
Sbjct: 690 HPTLPVTITAHEDRHIKFFDNKTGKMIHSMVAHLDAVTSLAVDPNGIYLMSGSH 743
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFD-----------NVSGKLVHSMVAHLDAVTSLAV 103
G+ + HP P+ +TA +D ++ ++ ++ + +++ AH+ V SLA+
Sbjct: 482 GVRALAFHPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHIGPVLSLAI 541
Query: 104 DPQGLYILSG 113
G SG
Sbjct: 542 SSNGEQCFSG 551
>sp|A5D7H2|STRN3_BOVIN Striatin-3 OS=Bos taurus GN=STRN3 PE=2 SV=1
Length = 797
Score = 143 bits (361), Expect = 3e-34, Method: Composition-based stats.
Identities = 66/114 (57%), Positives = 90/114 (78%), Gaps = 3/114 (2%)
Query: 4 NGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQF--GVSGGGGINRVVC 61
+G PTS+DF+ + MVT+F+ + V++DLET + +V + SSQ G+ INRVV
Sbjct: 631 HGIPTSVDFIGCDPAHMVTSFNTGSTVIYDLETSQSLVML-SSQMDSGLQSSNHINRVVS 689
Query: 62 HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
HPTLP+TITAH+DRHI+FFDN +GK++HSMVAHLDAVTSLAVDP G+Y++SG++
Sbjct: 690 HPTLPVTITAHEDRHIKFFDNKTGKMIHSMVAHLDAVTSLAVDPNGIYLMSGSH 743
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFD-----------NVSGKLVHSMVAHLDAVTSLAV 103
G+ + HP P+ +TA +D ++ ++ ++ + +++ AH+ V SLA+
Sbjct: 482 GVRALAFHPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHIGPVLSLAI 541
Query: 104 DPQGLYILSG 113
G SG
Sbjct: 542 SSNGEQCFSG 551
>sp|P58405|STRN3_RAT Striatin-3 OS=Rattus norvegicus GN=Strn3 PE=2 SV=2
Length = 794
Score = 143 bits (360), Expect = 3e-34, Method: Composition-based stats.
Identities = 63/113 (55%), Positives = 88/113 (77%), Gaps = 1/113 (0%)
Query: 4 NGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSS-QFGVSGGGGINRVVCH 62
+G PTS+DF+ + MVT+F+ + +++DLET + +V + S G+ INRVV H
Sbjct: 628 HGIPTSVDFIGCDPAHMVTSFNTGSAIIYDLETSQSLVMLSSQVDSGLQSSNHINRVVSH 687
Query: 63 PTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
PTLP+TITAH+DRHI+FFDN +GK++HSMVAHLDAVTSLAVDP G+Y++SG++
Sbjct: 688 PTLPVTITAHEDRHIKFFDNKTGKMIHSMVAHLDAVTSLAVDPNGIYLMSGSH 740
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFD-----------NVSGKLVHSMVAHLDAVTSLAV 103
G+ + HP P+ +TA +D ++ ++ ++ + +++ AH+ V SLA+
Sbjct: 479 GVRALAFHPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHIGPVLSLAI 538
Query: 104 DPQGLYILSG 113
G SG
Sbjct: 539 SSNGEQCFSG 548
>sp|P70483|STRN_RAT Striatin OS=Rattus norvegicus GN=Strn PE=1 SV=1
Length = 780
Score = 129 bits (323), Expect = 6e-30, Method: Composition-based stats.
Identities = 57/112 (50%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Query: 5 GTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSS-QFGVSGGGGINRVVCHP 63
G P S+D V + + MV +F +F++ET + ++ ++S+ S INRV+ HP
Sbjct: 615 GIPASVDLVSSDPSHMVASFSKGYTSIFNMETQQRILTLESNVDSTASSSCQINRVISHP 674
Query: 64 TLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
TLP++ITAH+DRHI+F+DN +GKL+HSMVAHL+AVTSLAVDP GLY++SG++
Sbjct: 675 TLPISITAHEDRHIKFYDNNTGKLIHSMVAHLEAVTSLAVDPNGLYLMSGSH 726
>sp|O43815|STRN_HUMAN Striatin OS=Homo sapiens GN=STRN PE=1 SV=4
Length = 780
Score = 128 bits (321), Expect = 1e-29, Method: Composition-based stats.
Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Query: 5 GTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSS-QFGVSGGGGINRVVCHP 63
G P S+D V + + MV +F +F++ET + ++ ++S+ + INRV+ HP
Sbjct: 615 GIPASVDLVSSDPSHMVASFSKGYTSIFNMETQQRILTLESNVDTTANSSCQINRVISHP 674
Query: 64 TLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
TLP++ITAH+DRHI+F+DN +GKL+HSMVAHL+AVTSLAVDP GLY++SG++
Sbjct: 675 TLPISITAHEDRHIKFYDNNTGKLIHSMVAHLEAVTSLAVDPNGLYLMSGSH 726
>sp|O55106|STRN_MOUSE Striatin OS=Mus musculus GN=Strn PE=1 SV=2
Length = 780
Score = 127 bits (318), Expect = 2e-29, Method: Composition-based stats.
Identities = 58/112 (51%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Query: 5 GTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSS-QFGVSGGGGINRVVCHP 63
G P S+D V + + MV +F +F++ET + V+ ++S+ S INRV+ HP
Sbjct: 615 GIPASVDLVSSDPSHMVASFSKGYTSIFNMETQQRVLTLESNVDSTSSSSCQINRVISHP 674
Query: 64 TLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
TLP++ITAH+DRHI+F+DN +GKL+HSMVAHL+AVTSLAVDP GLY++SG++
Sbjct: 675 TLPISITAHEDRHIKFYDNNTGKLIHSMVAHLEAVTSLAVDPNGLYLMSGSH 726
>sp|P58404|STRN4_MOUSE Striatin-4 OS=Mus musculus GN=Strn4 PE=1 SV=2
Length = 760
Score = 127 bits (318), Expect = 2e-29, Method: Composition-based stats.
Identities = 61/112 (54%), Positives = 80/112 (71%), Gaps = 2/112 (1%)
Query: 4 NGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHP 63
+G PTS+ F E +V +F + VL+DLE G ++ ++S G SG IN+VV HP
Sbjct: 597 HGIPTSVAFTSTEPAHVVASFRSGDTVLYDLEAGSALLTLESR--GSSGPAQINQVVSHP 654
Query: 64 TLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
+ PLTITAHDDR IRF DN +GK VHSMVAHLDAVT LAVDP G++++SG++
Sbjct: 655 SQPLTITAHDDRGIRFLDNRTGKSVHSMVAHLDAVTCLAVDPNGVFLMSGSH 706
>sp|Q9NRL3|STRN4_HUMAN Striatin-4 OS=Homo sapiens GN=STRN4 PE=1 SV=2
Length = 753
Score = 124 bits (310), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/112 (53%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 4 NGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHP 63
+G PTS+ F E +V +F + VL+D+E G ++ ++S G SG IN+VV HP
Sbjct: 590 HGVPTSVAFTSTEPAHIVASFRSGDTVLYDMEVGSALLTLESR--GSSGPTQINQVVSHP 647
Query: 64 TLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
PLTITAHDDR IRF DN +GK VHSMVAHLDAVT LAVDP G +++SG++
Sbjct: 648 NQPLTITAHDDRGIRFLDNRTGKPVHSMVAHLDAVTCLAVDPNGAFLMSGSH 699
>sp|Q54J37|STRN_DICDI Striatin homolog OS=Dictyostelium discoideum GN=strn PE=3 SV=1
Length = 827
Score = 82.4 bits (202), Expect = 7e-16, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 68/111 (61%), Gaps = 5/111 (4%)
Query: 7 PTSIDFVRDEST-KMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGG----INRVVC 61
PTSI E+ K++T++++ + +LFDLET + + ++ + IN++V
Sbjct: 660 PTSIALPATENNRKLLTSYNDGSILLFDLETQQIISQLKQGSSNNNNNNNNNSQINKIVS 719
Query: 62 HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
HP +PL +T +D I FFD S +VHSM+AH ++++SL +DP GLYI S
Sbjct: 720 HPFMPLAMTGSEDHKIEFFDLNSNTVVHSMIAHSNSISSLTIDPSGLYIAS 770
>sp|Q70M86|STRN_SORMK Striatin Pro11 OS=Sordaria macrospora (strain ATCC MYA-333 / DSM
997 / K(L3346) / K-hell) GN=pro11 PE=3 SV=1
Length = 845
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 34/47 (72%)
Query: 69 ITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
I+ H+DR+IRFFD SG+ ++M+AH +V+SL++ P G ++S +
Sbjct: 744 ISGHEDRYIRFFDANSGQCTYNMLAHPGSVSSLSLSPDGRELVSAGH 790
>sp|Q12417|PRP46_YEAST Pre-mRNA-splicing factor PRP46 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRP46 PE=1 SV=1
Length = 451
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 20 MVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRF 79
+ TA +S L+D+ T PV+ + V G IN+V C P P +++ D +R
Sbjct: 239 IATAGRDSVIKLWDMRTRIPVITL------VGHKGPINQVQCTPVDPQVVSSSTDATVRL 292
Query: 80 FDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSG 113
+D V+GK + + H +V + A+ P+ + S
Sbjct: 293 WDVVAGKTMKVLTHHKRSVRATALHPKEFSVASA 326
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAH---LDAVTSLAVDPQ 106
G+ V HPTL L TA D I+ +D + V ++V H ++ V VDPQ
Sbjct: 226 GVRTVSIHPTLDLIATAGRDSVIKLWDMRTRIPVITLVGHKGPINQVQCTPVDPQ 280
>sp|B4QHG6|LIS1_DROSI Lissencephaly-1 homolog OS=Drosophila simulans GN=Lis-1 PE=3 SV=1
Length = 411
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 47 QFGVSGG-GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDP 105
+F ++G I RV+ HP L ++A +D IR +D +G+ S+ H D+V +A D
Sbjct: 101 KFSLTGHRASITRVIFHPIFALMVSASEDATIRIWDFETGEYERSLKGHTDSVQDVAFDA 160
Query: 106 QGLYILS 112
QG + S
Sbjct: 161 QGKLLAS 167
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 62 HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
HP ++A DD+ IR +D + + + ++ AH TS+ Y++SG+
Sbjct: 348 HPGGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGS 400
>sp|B4HSL3|LIS1_DROSE Lissencephaly-1 homolog OS=Drosophila sechellia GN=Lis-1 PE=3 SV=1
Length = 411
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 47 QFGVSGG-GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDP 105
+F ++G I RV+ HP L ++A +D IR +D +G+ S+ H D+V +A D
Sbjct: 101 KFSLTGHRASITRVIFHPIFALMVSASEDATIRIWDFETGEYERSLKGHTDSVQDVAFDA 160
Query: 106 QGLYILS 112
QG + S
Sbjct: 161 QGKLLAS 167
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 62 HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
HP ++A DD+ IR +D + + + ++ AH TS+ Y++SG+
Sbjct: 348 HPGGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGS 400
>sp|Q7KNS3|LIS1_DROME Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1
SV=2
Length = 411
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 47 QFGVSGG-GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDP 105
+F ++G I RV+ HP L ++A +D IR +D +G+ S+ H D+V +A D
Sbjct: 101 KFSLTGHRASITRVIFHPIFALMVSASEDATIRIWDFETGEYERSLKGHTDSVQDVAFDA 160
Query: 106 QGLYILS 112
QG + S
Sbjct: 161 QGKLLAS 167
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 62 HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
HP ++A DD+ IR +D + + + ++ AH TS+ Y++SG+
Sbjct: 348 HPGGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGS 400
>sp|C4Q0P6|LIS1_SCHMA Lissencephaly-1 homolog OS=Schistosoma mansoni GN=Smp_129340 PE=3
SV=1
Length = 417
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
I RV+ HP + ++A +D I+ +D +G+ H++ H D+V +A DP G ++ S
Sbjct: 125 ITRVLFHPHYNVFVSASEDASIKVWDYETGEFEHTLKGHTDSVQDVAFDPSGKFLAS 181
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
+ ++V HP L ++A DD+ IR +D + + ++ AH VTSL V+ Y ++G+
Sbjct: 348 VRQLVFHPHGRLLLSASDDKTIRVWDLKNRRCHKTLNAHSHFVTSLDVNRLAPYAITGS 406
>sp|B4P6P9|LIS1_DROYA Lissencephaly-1 homolog OS=Drosophila yakuba GN=Lis-1 PE=3 SV=1
Length = 411
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 47 QFGVSGG-GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDP 105
+F ++G I RV+ HP L ++A +D IR +D +G+ S+ H D+V +A D
Sbjct: 101 KFSLTGHRASITRVIFHPIFGLMVSASEDATIRIWDFETGEYERSLKGHTDSVQDVAFDA 160
Query: 106 QGLYILS 112
QG + S
Sbjct: 161 QGKLLAS 167
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 62 HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
HP ++A DD+ IR +D + + + ++ AH TS+ Y++SG+
Sbjct: 348 HPGGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGS 400
>sp|B3NPW0|LIS1_DROER Lissencephaly-1 homolog OS=Drosophila erecta GN=Lis-1 PE=3 SV=1
Length = 411
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 47 QFGVSGG-GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDP 105
+F ++G I RV+ HP L ++A +D IR +D +G+ S+ H D+V +A D
Sbjct: 101 KFSLTGHRASITRVIFHPIFGLMVSASEDATIRIWDFETGEYERSLKGHTDSVQDVAFDA 160
Query: 106 QGLYILS 112
QG + S
Sbjct: 161 QGKLLAS 167
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 62 HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
HP ++A DD+ IR +D + + + ++ AH TS+ Y++SG+
Sbjct: 348 HPGGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGS 400
>sp|B4MY65|LIS1_DROWI Lissencephaly-1 homolog OS=Drosophila willistoni GN=Lis-1 PE=3 SV=1
Length = 409
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
I RV+ HP L ++A +D I+ +D +G+ S+ H D+V +A D QG ++S
Sbjct: 109 ITRVIFHPIFGLMVSASEDATIKIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLVS 165
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 62 HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
HP ++A DD+ IR +D + + + ++ AH TS+ Y++SG+
Sbjct: 346 HPGGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGS 398
>sp|A0CH87|LIS12_PARTE Lissencephaly-1 homolog 2 OS=Paramecium tetraurelia
GN=GSPATT00007594001 PE=3 SV=1
Length = 403
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 54 GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSG 113
G+N V HP + +A DD I+ +D SG ++ H V LA DP G YI S
Sbjct: 106 AGVNCVAFHPQYQILGSASDDGSIKLWDYESGHFEKTLKGHTSNVNCLAFDPTGKYICSA 165
Query: 114 T 114
+
Sbjct: 166 S 166
>sp|A0DB19|LIS11_PARTE Lissencephaly-1 homolog 1 OS=Paramecium tetraurelia
GN=GSPATT00015130001 PE=3 SV=1
Length = 403
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 54 GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSG 113
G+N V HP + +A DD I+ +D SG ++ H V LA DP G YI S
Sbjct: 106 AGVNCVAFHPQYQILGSASDDGSIKLWDYESGHFEKTLKGHTSNVNCLAFDPTGKYICSA 165
Query: 114 T 114
+
Sbjct: 166 S 166
>sp|B3MEY6|LIS1_DROAN Lissencephaly-1 homolog OS=Drosophila ananassae GN=Lis-1 PE=3 SV=1
Length = 411
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 47 QFGVSGG-GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDP 105
++ +SG I RV+ HP L ++A +D I+ +D +G+ S+ H D+V +A D
Sbjct: 101 KYSMSGHRASITRVIFHPIFGLVVSASEDATIKIWDFETGEYERSLKGHTDSVQDVAFDA 160
Query: 106 QGLYILS 112
QG + S
Sbjct: 161 QGKLLAS 167
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 62 HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
HP ++A DD+ IR +D + + + ++ AH TS+ Y++SG+
Sbjct: 348 HPAGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGS 400
>sp|D3TLL6|LIS1_GLOMM Lissencephaly-1 homolog OS=Glossina morsitans morsitans PE=2 SV=1
Length = 411
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 47 QFGVSGG-GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDP 105
+F +SG I RV+ HPT L ++A +D I+ +D +G+ S+ H +V +A D
Sbjct: 101 KFSLSGHRASITRVIFHPTYSLMLSASEDAVIKIWDFETGEYERSLKGHTSSVQDIAFDS 160
Query: 106 QGLYILS 112
QG + S
Sbjct: 161 QGKLLAS 167
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
+ + HP ++A DD+ IR +D + + + ++ AH TS+ + Y++SG+
Sbjct: 342 VRELTFHPGGKYLVSASDDKTIRVWDLRNKRFMKTLYAHQHFCTSVDFHKKLPYVISGS 400
>sp|Q5RE95|WDR5B_PONAB WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1
Length = 330
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S+++V+A D+ L+D+ +GK + + G N V C +P L I+
Sbjct: 94 DSSRLVSASDDKTLKLWDMRSGKCLKTLK---------GHSNYVFCCNFNPPSNLIISGS 144
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D ++ ++ +GK + ++ AH D V+++ + G I+SG+Y
Sbjct: 145 FDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSY 187
>sp|B4LQ21|LIS1_DROVI Lissencephaly-1 homolog OS=Drosophila virilis GN=Lis-1 PE=3 SV=1
Length = 411
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
I RV+ HP L ++A +D I+ +D +G+ S+ H D+V +A D QG + S
Sbjct: 111 ITRVIFHPIFGLMVSASEDATIKIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLAS 167
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 31 LFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHS 90
++D+ G+ ++ ++ V G + HP ++A DD+ IR +D + + + +
Sbjct: 323 IWDVSVGQCLLTLNGHDNWVRG------LAFHPGGKYLVSASDDKTIRVWDLRNKRCMKT 376
Query: 91 MVAHLDAVTSLAVDPQGLYILSGT 114
+ AH TS+ Y++SG+
Sbjct: 377 LYAHQHFCTSIDFHKAHPYVISGS 400
>sp|Q291L9|LIS1_DROPS Lissencephaly-1 homolog OS=Drosophila pseudoobscura pseudoobscura
GN=Lis-1 PE=3 SV=1
Length = 411
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
I RV+ HP L ++A +D I+ +D +G+ S+ H D+V +A D QG + S
Sbjct: 111 ITRVIFHPIFGLMVSASEDATIKIWDFETGEYERSLKGHTDSVQDVAFDSQGKLLAS 167
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 62 HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
HP ++A DD+ IR +D + + + ++ AH TS+ Y++SG+
Sbjct: 348 HPGGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGS 400
>sp|B4GAJ1|LIS1_DROPE Lissencephaly-1 homolog OS=Drosophila persimilis GN=Lis-1 PE=3 SV=1
Length = 411
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
I RV+ HP L ++A +D I+ +D +G+ S+ H D+V +A D QG + S
Sbjct: 111 ITRVIFHPIFGLMVSASEDATIKIWDFETGEYERSLKGHTDSVQDVAFDSQGKLLAS 167
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 62 HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
HP ++A DD+ IR +D + + + ++ AH TS+ Y++SG+
Sbjct: 348 HPGGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGS 400
>sp|B4KT48|LIS1_DROMO Lissencephaly-1 homolog OS=Drosophila mojavensis GN=Lis-1 PE=3 SV=1
Length = 411
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
I RV+ HP L ++A +D I+ +D +G+ S+ H D+V +A D QG + S
Sbjct: 111 ITRVIFHPIFGLMVSASEDATIKIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLAS 167
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 62 HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
HP ++A DD+ IR +D + + + ++ AH TS+ Y++SG+
Sbjct: 348 HPGGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGS 400
>sp|P49846|TAF5_DROME Transcription initiation factor TFIID subunit 5 OS=Drosophila
melanogaster GN=Taf5 PE=1 SV=1
Length = 704
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 54 GGINRVVC---HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYI 110
G ++ V C HP T DR +R +DN++G+ V M H +V+SLA G Y+
Sbjct: 532 GHLSDVDCVQFHPNSNYVATGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYL 591
Query: 111 LSGT 114
SG+
Sbjct: 592 ASGS 595
>sp|B4JWA1|LIS1_DROGR Lissencephaly-1 homolog OS=Drosophila grimshawi GN=Lis-1 PE=3 SV=1
Length = 411
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
I RV+ HP L ++A +D I+ +D +G+ ++ H D+V +A D QG ++S
Sbjct: 111 ITRVIFHPIFGLMVSASEDATIKIWDFETGEYERTLKGHTDSVQDVAFDAQGKLLVS 167
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 31 LFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHS 90
++D+ G+ ++ ++ V G + HP ++A DD+ IR +D + + + +
Sbjct: 323 IWDVSVGQCLLTLNGHDNWVRG------LAFHPGGKYLVSASDDKTIRVWDLRNKRCMKT 376
Query: 91 MVAHLDAVTSLAVDPQGLYILSGT 114
+ AH TS+ Y++SG+
Sbjct: 377 LYAHQHFCTSIDFHKAHPYVISGS 400
>sp|Q86VZ2|WDR5B_HUMAN WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1
Length = 330
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 12/103 (11%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC---HPTLPLTITAH 72
+S+++V+A D+ L+D+ +GK + + G N V C +P L I+
Sbjct: 94 DSSRLVSASDDKTLKLWDVRSGKCLKTLK---------GHSNYVFCCNFNPPSNLIISGS 144
Query: 73 DDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D ++ ++ +GK + ++ AH D V+++ + G I+SG+Y
Sbjct: 145 FDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSY 187
>sp|Q4P2E9|ERB1_USTMA Ribosome biogenesis protein ERB1 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=ERB1 PE=3 SV=1
Length = 932
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 51 SGGGGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYI 110
S G I ++V HPT P A R+IR +D ++ L+ ++ + +++L V P G ++
Sbjct: 762 SKGSSIQKLVFHPTKPWIFVA-TQRYIRIYDLMAQSLIKTLQSGFKWISTLDVHPSGDHL 820
Query: 111 LSGTY 115
+ G+Y
Sbjct: 821 MVGSY 825
>sp|Q9UUG8|TUP12_SCHPO Transcriptional repressor tup12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tup12 PE=1 SV=2
Length = 598
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 9 SIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLT 68
S+DF +D T + + D + C L+D+E G+ + + + G+ V+ P
Sbjct: 393 SLDFSKDGKTLVSGSGDRTVC-LWDVEAGEQKLILHTDD-------GVTTVMFSPDGQFI 444
Query: 69 ITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
D+ IR + + SG LV + H ++V S+A P G Y++SG+
Sbjct: 445 AAGSLDKVIRIWTS-SGTLVEQLHGHEESVYSVAFSPDGKYLVSGS 489
>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina
GN=HET-E1 PE=4 SV=1
Length = 1356
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 3 YNGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCH 62
+ G+ S+ F D ++ + D+ ++D +G ++ GG + VV
Sbjct: 1008 HGGSVWSVAFSPD-GQRVASGSDDKTIKIWDTASGTCTQTLEGH------GGWVQSVVFS 1060
Query: 63 PTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
P + DD I+ +D VSG ++ H D+V S+A P G + SG+
Sbjct: 1061 PDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGS 1112
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 3 YNGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCH 62
+ G+ S+ F D ++ + D+ ++D +G ++ GG + V
Sbjct: 882 HGGSVWSVAFSPDRE-RVASGSDDKTIKIWDAASGTCTQTLEGH------GGRVQSVAFS 934
Query: 63 PTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
P + DD I+ +D SG ++ H +V S+A P G + SG+
Sbjct: 935 PDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGS 986
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 53 GGGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
GG + V P + D+ I+ +D SG ++ H V S+A P G + S
Sbjct: 1177 GGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQRVAS 1236
Query: 113 GT 114
G+
Sbjct: 1237 GS 1238
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 53 GGGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
G + V P + D+ I+ +D SG ++ H +V S+A P G + S
Sbjct: 967 GSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVAS 1026
Query: 113 GT 114
G+
Sbjct: 1027 GS 1028
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 53 GGGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
GG ++ V P + D I+ +D SG ++ H V S+A P G + S
Sbjct: 1135 GGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVAS 1194
Query: 113 GT 114
G+
Sbjct: 1195 GS 1196
>sp|B0WC36|BOP1_CULQU Ribosome biogenesis protein BOP1 homolog OS=Culex quinquefasciatus
GN=CPIJ004506 PE=3 SV=1
Length = 861
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 46 SQFGVSGGGG-INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVD 104
SQF S G I V+ HP P A RHIR +D V +L+ + ++S+A+
Sbjct: 686 SQFPFSKSKGLIQCVLFHPVKPCLFVA-TQRHIRVYDLVKQELLKKLFPSCKWISSMAIH 744
Query: 105 PQGLYILSGTYQ 116
P+G +L TY+
Sbjct: 745 PKGDNLLVATYE 756
>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum
GN=wdr5 PE=3 SV=1
Length = 335
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 11 DFVRDESTKMV-TAFDNSACVLFDLETGKPVVRIDSSQ---FGVSGGGGINRVVCHPTLP 66
D + +K++ +A D+ ++D+E+GK V + + FGVS +P
Sbjct: 93 DIAWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVS---------FNPQSN 143
Query: 67 LTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
L ++ D ++R +D +G+ + AH D VT + + G ++SG+Y
Sbjct: 144 LIVSGSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSY 192
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
GI+ + L +A DD+ I+ +D SGK+V ++ H + V ++ +PQ I+SG+
Sbjct: 90 GISDIAWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNLIVSGS 149
Query: 115 Y 115
+
Sbjct: 150 F 150
>sp|P74442|Y143_SYNY3 Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr0143 PE=4 SV=1
Length = 1191
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSG 113
I V HPTLP + A D++ N G L+ S+VAH D + L P G Y+LS
Sbjct: 1000 IRSVSLHPTLP-QLAAGDEQGNLTLWNFDGTLIRSIVAHGDRLNQLQYSPNGKYLLSA 1056
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 54 GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSG 113
G I RV P + TA D+ ++ +D + G L+ ++ H D+V S++ P G IL+
Sbjct: 602 GSIYRVDFSPNGKIFATAGQDQTVKIWD-LDGNLLQTLKGHQDSVYSVSFSPDG-EILAS 659
Query: 114 T 114
T
Sbjct: 660 T 660
>sp|O61585|KTNB1_STRPU Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus
purpuratus GN=KATNB1 PE=1 SV=1
Length = 690
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 3 YNGTPTSIDFVR--DESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVV 60
Y G ++ ++ + +VTA +++ L+DL GK + GV+G +
Sbjct: 139 YKGHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKNHTGGVTG------IE 192
Query: 61 CHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
HP L + DR ++F+D + +LV S AV S++ P G Y+ +
Sbjct: 193 FHPNEFLLASGSSDRTVQFWDLETFQLVSSTSPGASAVRSISFHPDGSYLFCSS 246
>sp|Q17LZ2|BOP1_AEDAE Ribosome biogenesis protein BOP1 homolog OS=Aedes aegypti
GN=AAEL001169 PE=3 SV=1
Length = 866
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 46 SQFGVSGGGG-INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVD 104
SQF S G I V+ HP P A RH+R +D V +L+ + ++S+A+
Sbjct: 691 SQFPFSKSKGLIQCVLFHPVKPCLFVA-TQRHVRVYDLVKQELLKKLFPSCKWISSMAIH 749
Query: 105 PQGLYILSGTYQ 116
P+G +L TY+
Sbjct: 750 PKGDNLLVATYE 761
>sp|Q9NDC9|LIS1_CAEEL Lissencephaly-1 homolog OS=Caenorhabditis elegans GN=lis-1 PE=2
SV=1
Length = 404
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
I RV+ HP + + +D I+ +D +G+L ++ H DAV +A+D G ++S
Sbjct: 109 ITRVIFHPLWTIMASCSEDATIKVWDYETGQLERTLKGHTDAVNDIAIDAAGKQLVS 165
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 74 DRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
DR I+ ++ +G ++ +++AH + V LA P+G Y++S
Sbjct: 311 DRSIKAWNINTGDVLFTLLAHENWVRGLAFHPKGKYLIS 349
>sp|O74399|ERB1_SCHPO Ribosome biogenesis protein erb1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=erb1 PE=1 SV=2
Length = 740
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 54 GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSG 113
G + V HPT+P + A R++R ++ V +LV +++ + V+SL+V G +++ G
Sbjct: 574 GSVQAVTFHPTMPYLLVA-TQRYVRIYNLVKQELVKTLLTGVKWVSSLSVHSSGDHVIIG 632
Query: 114 TY 115
+Y
Sbjct: 633 SY 634
>sp|B6K1G6|CFD1_SCHJY Probable cytosolic Fe-S cluster assembly factor SJAG_02895
OS=Schizosaccharomyces japonicus (strain yFS275 /
FY16936) GN=SJAG_02895 PE=3 SV=1
Length = 616
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 54 GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVA-HLDAVTSLAVDP 105
G I V HPTLPL TA +D+ +R F +G+L+H + H +V +A P
Sbjct: 294 GRIWSVAVHPTLPLVATASEDKSVRVFQAQTGELIHVIDGYHTRSVRRVAWRP 346
>sp|C3XVT5|LIS1_BRAFL Lissencephaly-1 homolog OS=Branchiostoma floridae
GN=BRAFLDRAFT_59218 PE=3 SV=1
Length = 406
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
I RV+ HP + ++A +D I+ +D +G ++ H DAV ++ D QG + S
Sbjct: 109 ITRVLFHPVYSVMVSASEDATIKIWDYETGDFERTLKGHTDAVQDVSFDQQGKLLAS 165
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 17/101 (16%)
Query: 14 RDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHD 73
RD++ KM +D+ TG ++ + V G VV HP I+A D
Sbjct: 312 RDKTIKM-----------WDISTGVCIMTLVGHDNWVRG------VVWHPGGKYIISASD 354
Query: 74 DRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
D+ IR +D + + ++ AH TS+ Y+++G+
Sbjct: 355 DKTIRVWDYKNKRCQKTLEAHQHFCTSIDFHRSAPYVITGS 395
>sp|Q6FJZ9|PRP46_CANGA Pre-mRNA-splicing factor PRP46 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=PRP46 PE=3 SV=1
Length = 427
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 20 MVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRF 79
+VTA +S ++D+ T PV+ + + G I +V C P P I++ D IR
Sbjct: 215 VVTAGRDSVVKVWDIRTRLPVMTLPGHK------GPITKVRCLPVDPQVISSSVDASIRL 268
Query: 80 FDNVSGKLVHSMVAHLDAVTSLAVDP 105
+D V+GK + + H V ++V P
Sbjct: 269 WDLVAGKSMKVLTHHQRTVRDISVHP 294
>sp|A8XZJ9|LIS1_CAEBR Lissencephaly-1 homolog OS=Caenorhabditis briggsae GN=lis-1 PE=3
SV=2
Length = 390
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
+ RV+ HP + + +D I+ +D +G+L ++ H DAV +A+D G ++S
Sbjct: 109 VTRVIFHPLWTIMASCSEDATIKVWDYETGQLEKTLKGHTDAVNDIAIDAAGKQLVS 165
>sp|Q17N69|LIS1_AEDAE Lissencephaly-1 homolog OS=Aedes aegypti GN=AAEL000770 PE=3 SV=2
Length = 409
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 47 QFGVSGG-GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDP 105
+F ++G + RVV HP + +A +D I+ +D +G+ ++ H D+V LA D
Sbjct: 99 KFALAGHRATVTRVVFHPVFSMMASASEDATIKIWDFETGEYERTLKGHTDSVQDLAFDS 158
Query: 106 QGLYILS 112
G + S
Sbjct: 159 HGKLLAS 165
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 59 VVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
+V HP ++A DD+ +R +D + + + ++ AH TSL + Y++SG+
Sbjct: 343 IVFHPGGKYMLSASDDKTLRIWDLRNKRCMKTLYAHSHFCTSLDMHKSHPYVISGS 398
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 66 PLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
P + D+ IR +D SG + ++V H + V + P G Y+LS +
Sbjct: 308 PFLASGSRDKTIRVWDVNSGLCLFTLVGHDNWVRGIVFHPGGKYMLSAS 356
>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1
Length = 1207
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 20 MVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRF 79
++T+ N L+D G + R D V G + HPT PL ++ DD +
Sbjct: 26 ILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRG------IAFHPTQPLFVSGGDDYKVNV 79
Query: 80 FDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
++ S KL+ S+ H+D V + +ILS
Sbjct: 80 WNYKSRKLLFSLCGHMDYVRVCTFHHEYPWILS 112
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKL--VHSMVAHLDAVTSLAVDPQGLYILS 112
G+N HPTLPL ++A DDR ++ + + K V + H + V+ P ILS
Sbjct: 214 GVNWCAFHPTLPLILSAGDDRLVKLWRMTASKAWEVDTCRGHFNNVSCCLFHPHQELILS 273
Query: 113 GT 114
+
Sbjct: 274 AS 275
>sp|O76734|TUP1_DICDI General transcriptional corepressor tupA OS=Dictyostelium
discoideum GN=tupA PE=2 SV=1
Length = 579
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 9 SIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLT 68
S+D+ D +V+ + ++D+E GK + + + G G + V P L
Sbjct: 374 SLDYSSD-GRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNG--VTSVAMSPDGRLV 430
Query: 69 ITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
D +R +D +G + HLD+V S+A P G + SG+
Sbjct: 431 AAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGS 476
>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1
Length = 1526
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
+N VV +P + + D+ +R +D S K +H+ H + V S+A +P G + SG+
Sbjct: 1245 VNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGS 1303
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 34/59 (57%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
+ +V P L + DD+ +R ++ SG+ ++++ H+++V S+A GL + SG+
Sbjct: 1413 VGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGS 1471
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
+N V +P + + D+ +R ++ S K +H+ H V+S+ P G + SG+
Sbjct: 1287 VNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGS 1345
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 70 TAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSG 113
+ DD+ +R +D SG ++++ H V S+ P G + SG
Sbjct: 1049 SGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASG 1092
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
++ V P + + DD+ +R + SG+ +++ + H + V S+ P G + SG+
Sbjct: 1329 VSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGS 1387
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 70 TAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
+ DD+ +R +D SG+ + + H V S+ P L + SG+
Sbjct: 923 SGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGS 967
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
+ V+ P + + D+ +R + SGK ++++ H + V S+ P G + SG+
Sbjct: 1371 VGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGS 1429
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
+N V P + D+ +R +D S K ++ + H V S+ +P G + SG+
Sbjct: 1161 VNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGS 1219
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
+ VV P + + DD+ +R +D SG ++++ + V L P G+ + +G+
Sbjct: 1077 VRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGS 1135
>sp|A7S338|LIS1_NEMVE Lissencephaly-1 homolog OS=Nematostella vectensis GN=v1g242515 PE=3
SV=1
Length = 409
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
I +V+ HP + +T+ +D ++ +D +G ++ H DAV LA D G ++ S +
Sbjct: 109 ITKVLFHPVYSVMVTSSEDATVKVWDYETGDFERTLKGHTDAVQDLAFDHTGKFLASSS 167
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 20 MVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRF 79
+V+A + + ++D+ G +V + V + V+ HP ++ DD+ +R
Sbjct: 310 LVSASRDKSIKIWDVSAGVCLVTL------VGHDNWVRAVMFHPGGKFIVSCSDDKTLRI 363
Query: 80 FDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
+D + + ++VAH VT+L ++ +G+
Sbjct: 364 WDYKNKRCAKTLVAHEHFVTTLDFHKSAPFVATGS 398
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,520,383
Number of Sequences: 539616
Number of extensions: 1696357
Number of successful extensions: 5551
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 4705
Number of HSP's gapped (non-prelim): 969
length of query: 116
length of database: 191,569,459
effective HSP length: 84
effective length of query: 32
effective length of database: 146,241,715
effective search space: 4679734880
effective search space used: 4679734880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)