RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17133
(116 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 55.9 bits (133), Expect = 4e-11
Identities = 16/113 (14%), Positives = 40/113 (35%), Gaps = 5/113 (4%)
Query: 3 YNGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCH 62
+ +I F + + + D + + + + + GI V
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC-----GITSVSFS 279
Query: 63 PTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
+ L + +DD + +D + + H + V+ L V G+ + +G++
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Score = 45.1 bits (105), Expect = 3e-07
Identities = 9/61 (14%), Positives = 21/61 (34%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
+ + P L ++ D + +D G + H + ++ P G +G+
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 115 Y 115
Sbjct: 246 D 246
Score = 37.4 bits (85), Expect = 1e-04
Identities = 8/81 (9%), Positives = 24/81 (29%), Gaps = 7/81 (8%)
Query: 1 MFYNGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVV 60
TS+ F + ++ +D+ C ++D + ++ +
Sbjct: 267 DNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDALKADRAGVLAGHD------NRVSCLG 319
Query: 61 CHPTLPLTITAHDDRHIRFFD 81
T D ++ ++
Sbjct: 320 VTDDGMAVATGSWDSFLKIWN 340
Score = 29.3 bits (64), Expect = 0.086
Identities = 3/30 (10%), Positives = 12/30 (40%)
Query: 86 KLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
+ ++ HL + ++ ++S +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQ 75
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 55.1 bits (131), Expect = 9e-11
Identities = 18/110 (16%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Query: 6 TPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTL 65
T + +++ + ++D+ TG ++ + + V+ H
Sbjct: 206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD------NWVRGVLFHSGG 259
Query: 66 PLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
++ DD+ +R +D + + + ++ AH VTSL Y+++G+
Sbjct: 260 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309
Score = 39.3 bits (90), Expect = 3e-05
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 54 GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQ 106
+ RV+ HP + ++A +D I+ +D +G ++ H D+V ++ D
Sbjct: 18 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Score = 36.3 bits (82), Expect = 4e-04
Identities = 8/78 (10%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 4 NGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHP 63
+ + F +++ D+ ++D + + + +++ + + + H
Sbjct: 247 DNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNKRCMKTLNAHE------HFVTSLDFHK 299
Query: 64 TLPLTITAHDDRHIRFFD 81
T P +T D+ ++ ++
Sbjct: 300 TAPYVVTGSVDQTVKVWE 317
Score = 30.5 bits (67), Expect = 0.040
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 82 NVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
+++ H VT + P ++S +
Sbjct: 4 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASE 37
Score = 25.1 bits (53), Expect = 2.2
Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 37/144 (25%)
Query: 8 TSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSG--------------- 52
T + F S MV+A +++ ++D ETG + V
Sbjct: 21 TRVIFHPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79
Query: 53 ---------------------GGGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSM 91
++ V P ++A D+ I+ ++ +G V +
Sbjct: 80 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 139
Query: 92 VAHLDAVTSLAVDPQGLYILSGTY 115
H + V + + G I S +
Sbjct: 140 TGHREWVRMVRPNQDGTLIASCSN 163
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 48.3 bits (113), Expect = 2e-08
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 5 GTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVS------GGGGINR 58
+ S+ F RD + +V+ + + L++L+ + G +
Sbjct: 255 DSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313
Query: 59 VVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAV------DPQGLYILS 112
V ++ DR + F+D SG + + H ++V S+AV P+ +
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373
Query: 113 G 113
G
Sbjct: 374 G 374
Score = 39.0 bits (89), Expect = 3e-05
Identities = 10/81 (12%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 1 MFYNGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVV 60
+ + S+ +++ +++ + + +D ++G P++ + + V N
Sbjct: 305 IGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS 363
Query: 61 CHPTLPLTITAHDDRHIRFFD 81
P + T D R +
Sbjct: 364 LGPEYNVFATGSGDCKARIWK 384
Score = 29.4 bits (64), Expect = 0.081
Identities = 7/59 (11%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 60 VCHPTLPLTITAHDDRHIRFFDNVSGKL----VHSMVAHLDAVTSLAVDPQGLYILSGT 114
+ ++P + + + ++ + +H + H V + G Y+ +G
Sbjct: 23 LDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC 81
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 42.1 bits (97), Expect = 3e-06
Identities = 7/57 (12%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 59 VVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
+ ++ D + + G + +V S + YI++G+
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSG 326
Score = 34.0 bits (76), Expect = 0.002
Identities = 6/81 (7%), Positives = 19/81 (23%), Gaps = 8/81 (9%)
Query: 1 MFYNGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVV 60
+ S+ F V+ ++ + G + + +
Sbjct: 262 HLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYGASIFQSK-------ESSSVLSCD 313
Query: 61 CHPTLPLTITAHDDRHIRFFD 81
+T D+ ++
Sbjct: 314 ISVDDKYIVTGSGDKKATVYE 334
Score = 27.9 bits (60), Expect = 0.29
Identities = 3/30 (10%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 84 SGKLVHSMVAHLDAVTSLAVDPQGLYILSG 113
+ ++++ H + V ++ + ++ +G
Sbjct: 41 HARQINTL-NHGEVVCAVTISNPTRHVYTG 69
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 40.3 bits (92), Expect = 1e-05
Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 54 GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHS-MVAHLDAVTSLAVDPQGLYILS 112
++ + + + + ++ SGKLVH+ ++ D + S+ + L + +
Sbjct: 282 TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAA 340
Query: 113 GTY 115
Sbjct: 341 VEK 343
Score = 39.5 bits (90), Expect = 3e-05
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 69 ITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTYQ 116
IT DD+ IR +D+++ K + + H V +L G+ + T +
Sbjct: 27 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDR 74
Score = 24.9 bits (52), Expect = 3.2
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 7/78 (8%)
Query: 1 MFYNGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVV 60
+++ ++I +V+ +N + ++L +GK V + I V
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSGSENQFNI-YNLRSGKLV-----HANILKDADQIWSVN 331
Query: 61 CHPTLPLTITAHDDRHIR 78
L D
Sbjct: 332 FKGKT-LVAAVEKDGQSF 348
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 39.8 bits (91), Expect = 2e-05
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 56 INRVVCHPTLPLTITAHDDRHIRFFDNVSGK--LVHSMVAHLDAVTSLAVDPQGLYILSG 113
I+ + ++ + ++ K VH + H VT + P I++
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Score = 24.0 bits (50), Expect = 5.9
Identities = 4/28 (14%), Positives = 9/28 (32%), Gaps = 2/28 (7%)
Query: 88 VHSMVAHLDAVTSLAVDPQGLYILSGTY 115
HS ++ ++ A + I
Sbjct: 2 YHSF--LVEPISCHAWNKDRTQIAICPN 27
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 39.0 bits (89), Expect = 4e-05
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
Query: 20 MVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRF 79
+V+ +S ++D++TG+ + + S IT+ DD ++
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS-----AVTCLQFNKNFVITSSDDGTVKL 284
Query: 80 FDNVSGKLVHSMVA-----HLDAVTSLAVDPQGLYILSG 113
+D +G+ + ++V V + L G
Sbjct: 285 WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323
Score = 34.8 bits (78), Expect = 0.001
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 69 ITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDP 105
++ DD ++ + V+GK + ++V H V S +
Sbjct: 31 VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67
Score = 30.2 bits (66), Expect = 0.050
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 18 TKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDD--- 74
++T+ D+ L+DL+TG+ + + + + G S GG + R+ T + +
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS-GGVVWRIRASNTKLVCAVGSRNGTE 329
Query: 75 -RHIRFFD 81
+ D
Sbjct: 330 ETKLLVLD 337
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 38.7 bits (88), Expect = 6e-05
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 54 GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAV----TSLAVDPQGLY 109
+ + + + +A D +RF+D + + + ++ H D + LAVD G
Sbjct: 290 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDS 349
Query: 110 ILSG 113
+
Sbjct: 350 LAEP 353
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 37.9 bits (86), Expect = 1e-04
Identities = 11/114 (9%), Positives = 29/114 (25%), Gaps = 2/114 (1%)
Query: 1 MFYNGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVV 60
+ V FD+ ++ + + +N +
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDD-YNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258
Query: 61 CHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
P TA D I ++ + K + + + + + + + T
Sbjct: 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLAT 311
Score = 31.0 bits (68), Expect = 0.024
Identities = 4/60 (6%), Positives = 15/60 (25%), Gaps = 3/60 (5%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVA---HLDAVTSLAVDPQGLYIL 111
I+ + P+ L + D + + ++ + + +
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Score = 30.6 bits (67), Expect = 0.033
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 86 KLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
++V A D ++ + + P +L ++
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSW 31
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 35.6 bits (80), Expect = 6e-04
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 19/122 (15%)
Query: 1 MFYNGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVV 60
NG I ++ +V+ ++ L+D+E G + ++ G
Sbjct: 172 RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE--------GHEELVRC 223
Query: 61 CHPTLPLTITAHDDRHIRFFDNVSG---------KLVHSMVAHLDAVTSLAVDPQGLYIL 111
++ D I+ +D V+ + ++V H V L D I+
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIV 281
Query: 112 SG 113
S
Sbjct: 282 SS 283
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 35.3 bits (79), Expect = 8e-04
Identities = 7/56 (12%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 61 CHPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLD-AVTSLAVDPQGLYILSGTY 115
P +A D+ I+ ++ + K+ ++ L + ++S +
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 301
Score = 35.3 bits (79), Expect = 8e-04
Identities = 9/48 (18%), Positives = 11/48 (22%)
Query: 68 TITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
I + + S H T P G Y SG
Sbjct: 31 KIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Score = 29.1 bits (63), Expect = 0.11
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 17 STKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRH 76
TK+ +A + ++++ T K I V ++ T ++ +
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIP-----VGTRIEDQQLGIIWTKQALVSISANGF 304
Query: 77 IRFFD 81
I F +
Sbjct: 305 INFVN 309
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 33.8 bits (75), Expect = 0.003
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 55 GINRVVCHPTLPLTITAHDDRHIRFFD-NVSGKLVHSMVAHLDAVTSLAVDPQGLYILSG 113
L T D +I + K++ ++ AH D V +L + + SG
Sbjct: 217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSG 276
Score = 27.2 bits (58), Expect = 0.48
Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 84 SGKLVHSMVAHLDAVTSLAVDPQGLYILSGTY 115
+++ ++ H +T+L V+P ++SG+Y
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSY 29
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 32.5 bits (72), Expect = 0.009
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 9/109 (8%)
Query: 1 MFYNGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVV 60
+ Y+ I + D+ + + V+ D +TG+ + + + G I+ +
Sbjct: 254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-------MGHEIDSIN 306
Query: 61 CHP--TLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQG 107
L + D+ + D SG+ + S+ + G
Sbjct: 307 VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 32.1 bits (71), Expect = 0.009
Identities = 12/113 (10%), Positives = 26/113 (23%), Gaps = 4/113 (3%)
Query: 2 FYNGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVC 61
G+P V T +D + S + V
Sbjct: 225 LIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 284
Query: 62 HPTLPLTITAHDDRHIRFFDNVSGKLVHSMVAHLDAVTSLAVDPQGLYILSGT 114
A + + +D + K+ + +T L + ++
Sbjct: 285 GEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRK 333
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 31.9 bits (70), Expect = 0.012
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 85 GKLVHSMVAHLDAVTSLAVDPQGLYILSG 113
G + H A+T+L+ G + S
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSA 30
Score = 31.5 bits (69), Expect = 0.018
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 54 GGINRVVCHPTLPLTITAHDDRHIRFFDNVSGKLVHSMV-AHLDAVTSLAVDPQ 106
I + +A + HI +D +G H +T + +
Sbjct: 13 KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66
Score = 28.4 bits (61), Expect = 0.18
Identities = 7/62 (11%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 20 MVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRF 79
+ T +++ +++++ I + V ++A D +I+F
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPII----IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294
Query: 80 FD 81
++
Sbjct: 295 WN 296
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 29.9 bits (66), Expect = 0.063
Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 13/116 (11%)
Query: 7 PTSIDFVRDESTKM-VTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTL 65
P D VT D L D ++ K V ID G ++ +
Sbjct: 21 PKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID-------TGYAVHISRMSASG 73
Query: 66 PLTITAHDDRHIRFFDNVSGKL-----VHSMVAHLDAVTSLAVDPQGLYILSGTYQ 116
+ D I D + + + + +S + Y ++G Y
Sbjct: 74 RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW 129
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 28.6 bits (62), Expect = 0.14
Identities = 19/118 (16%), Positives = 27/118 (22%), Gaps = 10/118 (8%)
Query: 5 GTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPT 64
TP T + + V DL TG+ + RID S +
Sbjct: 34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG 93
Query: 65 LPLTITAHDDRHIRFFD----------NVSGKLVHSMVAHLDAVTSLAVDPQGLYILS 112
L I R + +T LA G +
Sbjct: 94 KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYG 151
Score = 25.5 bits (54), Expect = 1.7
Identities = 10/76 (13%), Positives = 20/76 (26%), Gaps = 5/76 (6%)
Query: 20 MVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPT-LPLTITAHDDRHIR 78
++ V+ D E I G + P T + +
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVIT----IADAGPTPMVPMVAPGGRIAYATVNKSESLV 59
Query: 79 FFDNVSGKLVHSMVAH 94
D V+G+ + +
Sbjct: 60 KIDLVTGETLGRIDLS 75
Score = 25.5 bits (54), Expect = 1.7
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 5 GTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSG 52
+ S++ D ST + +D ET + ++D
Sbjct: 280 HSYYSVNVSTDGSTVWLGGALGDLAA-YDAETLEKKGQVDLPGNASMS 326
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 28.3 bits (61), Expect = 0.19
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 16 ESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDR 75
+S K T ++ ++D+ T K V + G V I+ D
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKW---TLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Query: 76 HIRFFD 81
+ F++
Sbjct: 319 TLNFYE 324
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 28.3 bits (61), Expect = 0.23
Identities = 8/55 (14%), Positives = 14/55 (25%)
Query: 5 GTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRV 59
P I D V + + D T + + + G I +
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNPYASGQFIGSI 298
Score = 25.6 bits (54), Expect = 1.9
Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 8/77 (10%)
Query: 21 VTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPT-LPLTITAHDDRHIRF 79
+ ++ + D+ + K I G V P + + +
Sbjct: 6 IANSESDNISVIDVTSNKVTATIP-------VGSNPMGAVISPDGTKVYVANAHSNDVSI 58
Query: 80 FDNVSGKLVHSMVAHLD 96
D + ++ ++ A
Sbjct: 59 IDTATNNVIATVPAGSS 75
>d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein
{Prosthecochloris aestuarii, strain 2k [TaxId: 1102]}
Length = 359
Score = 28.0 bits (62), Expect = 0.27
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 41 VRIDSSQFGVS--GGGGINRVVCHPTLPL 67
V++D + GVS GGG+ R++ HP +PL
Sbjct: 260 VKVDGNLPGVSRDAGGGLRRILNHPLIPL 288
>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Chlamydomonas reinhardtii [TaxId:
3055]}
Length = 126
Score = 26.7 bits (59), Expect = 0.44
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 71 AHDDRHIRF--FDNVSGKLVHSMVAH 94
A D ++R FDN + +
Sbjct: 99 AFPDAYVRLVAFDNQKQVQIMGFLVQ 124
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 26.8 bits (59), Expect = 0.70
Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 14/115 (12%)
Query: 5 GTPTSIDFVRDESTKMVTAFDNSA----CVLFDLETGKPVVRIDSSQFGVS-GGGGINRV 59
T + I K+ F++ ++ + E G + G + I+
Sbjct: 280 PTVSVIAI-----DKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQ 334
Query: 60 VCHPTLPLTITAHDDRHIRFFDNVSGKL-VHSMVAHLDAVTSLAVDPQGLYILSG 113
VC + I ++ + + + KL V H A + + D G +++
Sbjct: 335 VCKWNIADAIKHYNGDRV---NYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL 386
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 26.2 bits (56), Expect = 1.1
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 5 GTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRID 44
T + F + + N V F+ +T + V I
Sbjct: 292 HTYYCVAFDKKGDKLYLGGTFNDLAV-FNPDTLEKVKNIK 330
Score = 25.9 bits (55), Expect = 1.3
Identities = 11/101 (10%), Positives = 26/101 (25%), Gaps = 12/101 (11%)
Query: 20 MVTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPT-LPLTITAHDDRHIR 78
M+ + + D+ + + G + P + + I
Sbjct: 11 MIVTNYPNNLHVVDVASDTVYKSCV-----MPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 65
Query: 79 FFDNVSGKLVH------SMVAHLDAVTSLAVDPQGLYILSG 113
D + K ++ S A+ P G + +
Sbjct: 66 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYAT 106
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 26.1 bits (56), Expect = 1.1
Identities = 8/40 (20%), Positives = 10/40 (25%)
Query: 5 GTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPVVRID 44
SI D+ S V+ D TG
Sbjct: 273 EPLVSIQVSEDDKPLFYGLTATSDLVVMDARTGALQHVEK 312
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 25.9 bits (56), Expect = 1.2
Identities = 18/115 (15%), Positives = 30/115 (26%), Gaps = 13/115 (11%)
Query: 7 PTSIDFVRDESTKM-VTAFDNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTL 65
PT D VT D L D T + +D+ G ++ +
Sbjct: 21 PTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-------GYAVHISRLSASG 73
Query: 66 PLTITAHDDRHIRFFDNVSGKL-----VHSMVAHLDAVTSLAVDPQGLYILSGTY 115
D + D + + TS + Y ++G Y
Sbjct: 74 RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY 128
>d2essa1 d.38.1.8 (A:1-149) Acyl-ACP thioesterase {Bacteroides
thetaiotaomicron [TaxId: 818]}
Length = 149
Score = 25.1 bits (54), Expect = 1.6
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 1 MFYNGTPTSIDFVRDESTKMVTAFDNSACVLFDLETGKPV 40
T +F + + S + +L T KP
Sbjct: 85 ENVYRLFTDRNFAVIDKDGKKIGYARSVWAMINLNTRKPA 124
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022,
C-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 70
Score = 23.9 bits (52), Expect = 2.3
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 23 AFDNSACVLFDLETGKPVV 41
D +FD +T K +V
Sbjct: 52 IMDLDMIHVFDKDTEKAIV 70
>d1g2914 b.40.6.3 (1:302-372) Maltose transport protein MalK,
C-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 71
Score = 24.0 bits (52), Expect = 2.9
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 23 AFDNSACVLFDLETGK 38
FD +FD TGK
Sbjct: 53 VFDMKKIHIFDKTTGK 68
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 24.6 bits (52), Expect = 3.6
Identities = 3/41 (7%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 5 GTPTSIDFVRDESTKM-VTAFDNSACVLFDLETGKPVVRID 44
+I +D ++ + ++D + + ++
Sbjct: 314 HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 470
Score = 24.7 bits (52), Expect = 3.9
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 10/72 (13%)
Query: 25 DNSACVLFDLETGKPVVRIDSSQFGVSGGGGINRVVCHPTLPLTITAHDDRHIRFFDNVS 84
+ ++F+ E G V +++S F G IN P D + I N
Sbjct: 34 QENNILVFNAEYGNSSVFLENSTFD-EFGHSINDYSISP---------DGQFILLEYNYV 83
Query: 85 GKLVHSMVAHLD 96
+ HS A D
Sbjct: 84 KQWRHSYTASYD 95
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 24.4 bits (51), Expect = 4.3
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 69 ITAHDDRHIRFFD-NVSGKL-VHSMVAHLDAVTSLAVDPQGLYILSG 113
I + + + I ++ N G L + +V V + V P Y+ G
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVG 54
>d2i06a1 e.2.1.1 (A:5-309) Replication terminator protein (Tus)
{Escherichia coli [TaxId: 562]}
Length = 305
Score = 24.4 bits (53), Expect = 4.6
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 62 HPTLPLTITAHDDRHIRFFDNVS 84
H LP IT + R + + +
Sbjct: 140 HRHLPGLITLNAYRTLTVLHDPA 162
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.413
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 437,447
Number of extensions: 18285
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 68
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)