BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17134
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2TBQ0|TFB1M_BOVIN Mitochondrial dimethyladenosine transferase 1 OS=Bos taurus
GN=TFB1M PE=2 SV=2
Length = 341
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 7 LLFPKRKR-QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 64
+LFP+ +R + LLE A V P LRP QL+V F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEARRLESTGKLLELADVDPTLRPTQLTVSHFKSLCDVYRKMCDEDPHLFAYNFRE 324
>sp|Q8WVM0|TFB1M_HUMAN Dimethyladenosine transferase 1, mitochondrial OS=Homo sapiens
GN=TFB1M PE=1 SV=1
Length = 346
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 7 LLFPKRKR-QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 64
+LFP+ +R + LLE A + P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCDEDPQLFAYNFRE 324
>sp|Q2PG46|TFB1M_MACFA Dimethyladenosine transferase 1, mitochondrial OS=Macaca
fascicularis GN=TFB1M PE=2 SV=1
Length = 345
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 7 LLFPKRKR-QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 65
+LFP+ +R + LLE A + P LRP QLS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFKSLCEVYRRMCDEDPQLFAYNFRE- 324
Query: 66 PGDIEPEAVAEQEGEGD 82
++ + ++E + D
Sbjct: 325 --ELRQRKIKKKEKQDD 339
>sp|Q28HM1|TFB1M_XENTR Dimethyladenosine transferase 1, mitochondrial OS=Xenopus
tropicalis GN=tfb1m PE=2 SV=1
Length = 346
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 7 LLFPKRKR-QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 65
+LFP+ R + +L A V P LRP +L++ F ++C YR+MC++ P L+ Y +
Sbjct: 266 ILFPEESRLKCTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCDQNPNLFAYNFREE 325
Query: 66 PGDIEPEAVAEQEGEGDEI 84
+ + +EGE D++
Sbjct: 326 LRMRKLQGKTTEEGEEDDL 344
>sp|Q8JZM0|TFB1M_MOUSE Dimethyladenosine transferase 1, mitochondrial OS=Mus musculus
GN=Tfb1m PE=2 SV=1
Length = 345
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 7 LLFPKRKR-QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 65
+LFP+ +R + LL+ A + P LRP LS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDVYRKMCDEDPQLFTYNFRE- 324
Query: 66 PGDIEPEAVAEQEGEGD 82
+++ + QE +GD
Sbjct: 325 --ELKQKKSKGQEKDGD 339
>sp|Q811P6|TFB1M_RAT Dimethyladenosine transferase 1, mitochondrial OS=Rattus norvegicus
GN=Tfb1m PE=2 SV=1
Length = 345
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 7 LLFPKRKR-QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDT 65
+LFP+ +R + LL+ A + P LRP LS+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSLCDVYRKMCDEDPQLFAYNFRE- 324
Query: 66 PGDIEPEAVAEQEGEGDE 83
+++ + QE +GD
Sbjct: 325 --ELKQKKRKGQEKDGDS 340
>sp|Q7T0W5|TFB1M_XENLA Dimethyladenosine transferase 1, mitochondrial OS=Xenopus laevis
GN=tfb1m PE=2 SV=1
Length = 344
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 7 LLFPKRKR-QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPGLYEYT 61
+LFP+ R QL +L A V P LRP +L++ F ++C YR+MC++ P L+ Y
Sbjct: 266 ILFPEEIRIQLTEQMLRLADVDPTLRPTELTMTHFKKLCNVYREMCDQNPHLFSYN 321
>sp|Q5R4V9|TFB1M_PONAB Dimethyladenosine transferase 1, mitochondrial OS=Pongo abelii
GN=TFB1M PE=2 SV=1
Length = 343
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 7 LLFPKRKR-QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 64
+LFP+ +R + LLE A V P LRP Q S+ F +C YR MC+E P L+ Y +
Sbjct: 266 MLFPEAQRLESTGRLLELADVDPTLRPCQPSISHFKSLCDVYRKMCDEDPQLFAYNFRE 324
>sp|Q3Z9F0|RSMA_DEHE1 Ribosomal RNA small subunit methyltransferase A OS=Dehalococcoides
ethenogenes (strain 195) GN=rsmA PE=3 SV=1
Length = 291
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 13 KRQLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRD 49
+Q V++LL RA ++P R LS++E+ +CL Y +
Sbjct: 252 SKQSVLALLNRAGIEPARRAETLSMEEWKMLCLVYTE 288
>sp|Q871U2|ATG7_NEUCR Ubiquitin-like modifier-activating enzyme atg-7 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=atg-7 PE=3 SV=1
Length = 699
Score = 32.3 bits (72), Expect = 0.94, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 24 ACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPGLYE 59
AC KP+L Y+ EF + LA RD E+ GL E
Sbjct: 633 ACSKPILDAYKEGGWEFVKTALASRDYVAELSGLAE 668
>sp|Q2LZ79|TFB1M_DROPS Dimethyladenosine transferase 1, mitochondrial OS=Drosophila
pseudoobscura pseudoobscura GN=mtTFB1 PE=3 SV=2
Length = 337
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 4 WAILLFPKRKRQLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPGL--YEYT 61
+ LL P + + +L +RA V+ LR ++LSV + ++ AY + +E P + Y+Y
Sbjct: 263 YGTLLPPDSREETTQTLFQRADVRDTLRSFELSVPQCLRLADAYAEYIKEHPEVEAYDYR 322
Query: 62 LEDTPGDIEPEAVAE 76
P D+ A A
Sbjct: 323 GPKNP-DVSGAAAAS 336
>sp|Q82WS3|CAPP_NITEU Phosphoenolpyruvate carboxylase OS=Nitrosomonas europaea (strain
ATCC 19718 / NBRC 14298) GN=ppc PE=3 SV=1
Length = 933
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 19 SLLERACVKPVLRPYQLSVQEFGQ-ICLAYRDMCEEMPGLYEYTLEDTP 66
+LL+R V Y ++E C AYRD+ + PG ++ LE TP
Sbjct: 688 TLLDRDAVHYHAPHYHQIMEELSSSACAAYRDLVYKTPGFKQFFLESTP 736
>sp|Q180F3|DNLJ_CLOD6 DNA ligase OS=Clostridium difficile (strain 630) GN=ligA PE=3 SV=2
Length = 674
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 2 PLWAILL-FPKRKRQ-----LVVSLLERACVKP--VLRPYQLSVQEFGQICLAYRDMCEE 53
P WAI FP K++ ++V + + P +L P +L+ + L D E
Sbjct: 300 PRWAIAYKFPAEKKKTKIVDIIVEVGRTGTITPSAILEPVRLAGTTVSRATLHNEDYIRE 359
Query: 54 MP-GLYEYTLEDTPGDIEPEA--VAEQEGEGDEIDF 86
+ + L GDI P+ V ++E GDEIDF
Sbjct: 360 KDIKINDTVLVQKAGDIIPQVLEVIKEERTGDEIDF 395
>sp|P91424|TFB1M_CAEEL Dimethyladenosine transferase 1, mitochondrial OS=Caenorhabditis
elegans GN=T03F1.7 PE=3 SV=2
Length = 367
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 15 QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTPGDIE 70
+L LL++ + P +L +++F + Y + C PGL+ Y + ++E
Sbjct: 275 ELSDDLLKKCRIDPTTTSIRLGIEQFADLAEGYNEQCIRYPGLFLYDYTNKLHNLE 330
>sp|Q143B6|CAPP_BURXL Phosphoenolpyruvate carboxylase OS=Burkholderia xenovorans (strain
LB400) GN=ppc PE=3 SV=1
Length = 994
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 16 LVVSLLERACVKPVLRPYQLSVQEFGQICLA-YRDMCEEMPGLYEYTLEDTP 66
L SLL L ++ ++Q+ +A YR + E PG EY E TP
Sbjct: 739 LEASLLPHGIAPAQLPAFEETMQQLSDAAMASYRALVYETPGFKEYFFESTP 790
>sp|Q8BW49|TTC12_MOUSE Tetratricopeptide repeat protein 12 OS=Mus musculus GN=Ttc12 PE=2
SV=1
Length = 704
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 18 VSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPGLYE---YTL 62
++LL +P R + ++ +EFG CL CEE L+ YTL
Sbjct: 451 IALLGNISAEPTARKHMIAHEEFGNACLDLLVKCEEDMDLFREITYTL 498
>sp|Q5RAC4|SLIK1_PONAB SLIT and NTRK-like protein 1 OS=Pongo abelii GN=SLITRK1 PE=2 SV=1
Length = 696
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 45 LAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQE 78
L Y ++ E++PG+ E LED P D + ++ +E
Sbjct: 192 LPYEEVLEQIPGIAEILLEDNPWDCTCDLLSLKE 225
>sp|Q96PX8|SLIK1_HUMAN SLIT and NTRK-like protein 1 OS=Homo sapiens GN=SLITRK1 PE=1 SV=2
Length = 696
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 45 LAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQE 78
L Y ++ E++PG+ E LED P D + ++ +E
Sbjct: 192 LPYEEVLEQIPGIAEILLEDNPWDCTCDLLSLKE 225
>sp|Q810C1|SLIK1_MOUSE SLIT and NTRK-like protein 1 OS=Mus musculus GN=Slitrk1 PE=2 SV=1
Length = 696
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 45 LAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQE 78
L Y ++ E++PG+ E LED P D + ++ +E
Sbjct: 192 LPYEEVLEQIPGIAEILLEDNPWDCTCDLLSLKE 225
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.141 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,999,837
Number of Sequences: 539616
Number of extensions: 1393098
Number of successful extensions: 2723
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2704
Number of HSP's gapped (non-prelim): 27
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)