Query psy17134
Match_columns 89
No_of_seqs 73 out of 75
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 22:46:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fut_A Dimethyladenosine trans 97.2 0.00033 1.1E-08 52.2 4.0 36 14-49 234-269 (271)
2 1qyr_A KSGA, high level kasuga 96.9 0.00098 3.3E-08 48.8 4.7 32 18-49 219-250 (252)
3 1qam_A ERMC' methyltransferase 96.9 0.00044 1.5E-08 49.6 2.4 32 19-50 211-242 (244)
4 3ftd_A Dimethyladenosine trans 96.7 0.0012 4.2E-08 48.0 4.0 29 20-48 217-245 (249)
5 3tqs_A Ribosomal RNA small sub 96.6 0.0012 4E-08 48.6 3.0 28 20-47 227-254 (255)
6 3uzu_A Ribosomal RNA small sub 96.5 0.0014 4.7E-08 48.9 3.0 30 20-49 245-274 (279)
7 1yub_A Ermam, rRNA methyltrans 96.4 0.001 3.5E-08 47.1 1.8 33 21-53 212-244 (245)
8 3gru_A Dimethyladenosine trans 95.6 0.0071 2.4E-07 45.6 3.0 40 15-54 246-292 (295)
9 1zq9_A Probable dimethyladenos 95.6 0.013 4.3E-07 42.9 4.2 33 15-48 246-278 (285)
10 2h1r_A Dimethyladenosine trans 94.6 0.045 1.5E-06 40.3 4.8 34 15-49 258-291 (299)
11 3r8n_M 30S ribosomal protein S 94.1 0.063 2.1E-06 36.5 4.2 33 15-47 27-59 (114)
12 3j20_O 30S ribosomal protein S 92.0 0.19 6.4E-06 35.6 4.2 44 15-58 34-78 (148)
13 3u5c_S 40S ribosomal protein S 91.9 0.19 6.4E-06 35.5 4.1 34 14-47 40-73 (146)
14 2vqe_M 30S ribosomal protein S 91.6 0.15 5.1E-06 35.2 3.3 34 15-48 28-61 (126)
15 3iz6_M 40S ribosomal protein S 91.6 0.21 7.1E-06 35.4 4.1 33 15-47 39-71 (152)
16 2xzm_M RPS18E; ribosome, trans 91.5 0.27 9.1E-06 35.0 4.6 44 15-58 41-85 (155)
17 1i4w_A Mitochondrial replicati 89.2 0.19 6.4E-06 39.1 2.4 43 4-49 289-332 (353)
18 2cmx_A ORF F-112, F112, hypoth 85.8 0.4 1.4E-05 33.0 2.2 38 31-68 37-74 (118)
19 3twl_A Formamidopyrimidine-DNA 85.7 1.3 4.6E-05 33.8 5.2 37 17-53 189-225 (310)
20 2xzf_A Formamidopyrimidine-DNA 85.4 1.5 5E-05 32.7 5.2 37 17-53 174-210 (271)
21 3u6p_A Formamidopyrimidine-DNA 85.2 1.4 4.9E-05 32.8 5.1 37 17-53 176-212 (273)
22 1k3x_A Endonuclease VIII; hydr 85.0 1.5 5.1E-05 32.4 5.1 39 17-55 171-209 (262)
23 1ee8_A MUTM (FPG) protein; bet 85.0 1.6 5.4E-05 32.5 5.2 38 17-54 164-201 (266)
24 1k82_A Formamidopyrimidine-DNA 84.8 1.6 5.4E-05 32.5 5.1 38 17-54 171-208 (268)
25 3vk8_A Probable formamidopyrim 82.1 2.3 7.9E-05 32.2 5.2 36 17-52 176-211 (295)
26 1mu5_A Type II DNA topoisomera 79.3 1.4 5E-05 35.1 3.3 36 15-50 269-304 (471)
27 3w0f_A Endonuclease 8-like 3; 72.7 5.5 0.00019 30.4 4.9 36 17-52 195-230 (287)
28 2k6m_S Supervillin; SVHP, HP, 70.5 2.6 9E-05 26.1 2.2 20 24-43 22-41 (67)
29 1yu8_X Villin; alpha helix, 3- 68.1 3.6 0.00012 25.5 2.4 21 24-44 22-42 (67)
30 1qzp_A Dematin; villin headpie 66.3 3.2 0.00011 25.7 2.0 20 24-43 23-42 (68)
31 2asw_A Hypothetical protein AF 55.1 19 0.00063 18.0 3.9 39 15-53 11-50 (56)
32 2vqc_A Hypothetical 13.2 kDa p 54.9 11 0.00037 25.6 3.1 39 28-66 34-72 (118)
33 1ujs_A Actin-binding LIM prote 52.2 5.7 0.0002 25.8 1.4 21 24-44 37-57 (88)
34 4aq4_A SN-glycerol-3-phosphate 51.8 19 0.00064 25.6 4.2 29 19-49 134-162 (419)
35 3i3v_A Probable secreted solut 42.3 26 0.0009 25.1 3.7 25 19-49 133-159 (405)
36 2it9_A Hypothetical protein; s 37.4 22 0.00074 24.6 2.5 27 31-57 30-56 (127)
37 3hf5_A 4-methylmuconolactone m 36.9 27 0.00093 22.8 2.9 35 30-64 18-52 (116)
38 2nvn_A Hypothetical protein; s 36.6 20 0.0007 24.6 2.3 28 31-58 32-59 (122)
39 2zbk_B Type 2 DNA topoisomeras 33.9 41 0.0014 27.3 4.0 36 15-50 268-303 (530)
40 2cwd_A Low molecular weight ph 33.8 46 0.0016 22.3 3.7 42 15-56 56-104 (161)
41 3n8i_A Low molecular weight ph 33.5 49 0.0017 22.3 3.8 41 15-55 57-104 (157)
42 3p9a_A DNA-packaging protein G 32.9 41 0.0014 24.1 3.4 28 31-58 19-46 (162)
43 3jvi_A Protein tyrosine phosph 31.4 56 0.0019 22.0 3.8 41 15-55 56-103 (161)
44 1tdh_A NEI endonuclease VIII-l 30.8 12 0.0004 29.5 0.3 37 17-53 179-235 (364)
45 3mab_A Uncharacterized protein 30.7 1E+02 0.0036 19.5 4.9 35 15-57 14-50 (93)
46 2uvj_A TOGB, ABC type periplas 29.6 58 0.002 23.4 3.8 26 19-49 128-153 (408)
47 2i0z_A NAD(FAD)-utilizing dehy 29.5 53 0.0018 24.6 3.7 35 15-49 334-368 (447)
48 2b3f_A Glucose-binding protein 29.3 62 0.0021 23.3 3.9 26 19-49 129-154 (400)
49 2z8f_A Galacto-N-biose/lacto-N 29.1 62 0.0021 23.4 3.9 26 19-49 139-165 (412)
50 4etn_A LMPTP, low molecular we 28.7 63 0.0022 22.5 3.8 43 15-57 83-132 (184)
51 3quf_A Extracellular solute-bi 27.5 68 0.0023 23.0 3.9 26 19-49 146-172 (414)
52 3o6p_A Peptide ABC transporter 27.5 29 0.00099 23.3 1.8 44 15-58 81-130 (229)
53 3bbn_M Ribosomal protein S13; 27.2 6 0.00021 27.9 -1.8 30 16-46 74-103 (145)
54 2heu_A Sugar ABC transporter, 26.4 71 0.0024 23.0 3.8 26 19-49 136-161 (401)
55 3e7a_A PP-1A, serine/threonine 26.2 1.2E+02 0.0041 22.8 5.2 45 15-60 10-54 (299)
56 3pam_A Transmembrane protein; 26.0 75 0.0026 21.6 3.7 39 15-53 103-153 (259)
57 1u2p_A Ptpase, low molecular w 25.8 69 0.0023 21.3 3.5 43 15-57 56-104 (163)
58 3lvu_A ABC transporter, peripl 25.2 83 0.0029 21.4 3.9 39 15-53 102-154 (258)
59 3zrx_A AF1503 protein, osmolar 24.5 99 0.0034 17.2 3.9 39 15-53 13-52 (115)
60 3zcc_A HAMP, osmolarity sensor 23.6 1.1E+02 0.0036 17.2 4.0 39 15-53 13-52 (114)
61 1pcf_A P15, transcriptional co 23.1 39 0.0013 20.6 1.6 23 28-50 37-59 (66)
62 4gqo_A LMO0859 protein; virule 23.1 88 0.003 22.5 3.8 27 19-49 156-182 (433)
63 2fbd_A Lysozyme 1; digestive l 22.9 82 0.0028 21.0 3.4 26 13-45 4-30 (122)
64 2ys8_A RAB-related GTP-binding 22.9 93 0.0032 18.8 3.4 30 20-57 29-59 (90)
65 2ctr_A DNAJ homolog subfamily 22.7 64 0.0022 19.3 2.6 27 26-52 35-61 (88)
66 1ehs_A STB, heat-stable entero 22.6 18 0.00061 21.0 -0.0 13 41-53 7-19 (48)
67 1xk4_A Calgranulin A; S100 fam 22.3 1.2E+02 0.0041 17.3 5.0 36 15-53 49-84 (93)
68 3vlv_A ALGQ1; sugar binding pr 21.9 1E+02 0.0035 23.2 4.1 31 18-56 143-173 (502)
69 3lpz_A GET4 (YOR164C homolog); 21.8 93 0.0032 24.0 3.9 44 8-59 238-283 (336)
70 4etm_A LMPTP, low molecular we 21.8 1E+02 0.0036 21.0 3.8 41 15-55 70-118 (173)
71 3omb_A Extracellular solute-bi 21.6 1E+02 0.0035 23.3 4.0 30 19-56 172-201 (535)
72 3oo8_A ABC transporter binding 21.5 1E+02 0.0035 22.0 3.8 26 19-49 149-174 (415)
73 3q8i_A Odorant binding protein 21.3 92 0.0031 19.2 3.2 24 35-58 1-24 (124)
74 3v2l_A AGAP005208-PA; odorant 21.1 65 0.0022 19.5 2.4 24 35-58 1-24 (120)
75 1faf_A Large T antigen; J doma 21.0 67 0.0023 19.2 2.4 12 18-29 11-22 (79)
76 1qpc_A LCK kinase; alpha beta 20.9 1.2E+02 0.004 20.2 3.9 35 8-45 230-265 (279)
77 1k9u_A Polcalcin PHL P 7; poll 20.9 1.1E+02 0.0038 16.4 4.2 34 15-51 38-71 (78)
78 3k01_A Acarbose/maltose bindin 20.8 1.1E+02 0.0037 22.0 3.8 27 19-50 150-176 (412)
79 3tif_A Uncharacterized ABC tra 20.7 1.7E+02 0.0058 20.3 4.8 50 10-61 117-170 (235)
80 1qls_A S100C protein, calgizza 20.5 1.3E+02 0.0044 17.0 5.3 34 15-51 56-89 (99)
81 1jl3_A Arsenate reductase; alp 20.2 53 0.0018 21.3 1.9 42 15-56 46-94 (139)
82 3v76_A Flavoprotein; structura 20.0 96 0.0033 23.5 3.6 41 5-49 306-346 (417)
No 1
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=97.16 E-value=0.00033 Score=52.24 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCCCcccccccHHHHHHHHHHHHH
Q psy17134 14 RQLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 14 Relt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
++...++|..+||||+.||.+||++||.+|+.+|++
T Consensus 234 ~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 269 (271)
T 3fut_A 234 KARVEEALRALGLPPRVRAEELDLEAFRRLREGLEG 269 (271)
T ss_dssp HHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHHh
Confidence 355678899999999999999999999999999854
No 2
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=96.93 E-value=0.00098 Score=48.84 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=28.8
Q ss_pred HHHHHhcCCCCCcccccccHHHHHHHHHHHHH
Q psy17134 18 VSLLERACVKPVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 18 ~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
.+.|..+||||+.||-+||++||.+|+.++.+
T Consensus 219 ~~~l~~~~i~~~~R~e~Ls~~~f~~l~~~~~~ 250 (252)
T 1qyr_A 219 VEVLTGMGIDPAMRAENISVAQYCQMANYLAE 250 (252)
T ss_dssp HHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCChHHCCHHHHHHHHHHHHh
Confidence 45688999999999999999999999999864
No 3
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=96.88 E-value=0.00044 Score=49.60 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=29.0
Q ss_pred HHHHhcCCCCCcccccccHHHHHHHHHHHHHH
Q psy17134 19 SLLERACVKPVLRPYQLSVQEFGQICLAYRDM 50 (89)
Q Consensus 19 ~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~ 50 (89)
+++..+|+||+.||-+||++||.+|+.+|..+
T Consensus 211 ~~~~~~~~~~~~r~e~l~~~~~~~l~~~~~~~ 242 (244)
T 1qam_A 211 QFNNSLKHAGIDDLNNISFEQFLSLFNSYKLF 242 (244)
T ss_dssp HHHHHHHHHTCSCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCceeCCHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999764
No 4
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=96.75 E-value=0.0012 Score=48.03 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=27.3
Q ss_pred HHHhcCCCCCcccccccHHHHHHHHHHHH
Q psy17134 20 LLERACVKPVLRPYQLSVQEFGQICLAYR 48 (89)
Q Consensus 20 Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~ 48 (89)
.|..++|||+.||-+||+++|.+|+.++.
T Consensus 217 ~l~~~~i~~~~r~e~l~~~~f~~l~~~~~ 245 (249)
T 3ftd_A 217 LLKEAGINPDARVEQLSLEDFFKLYRLIE 245 (249)
T ss_dssp HHHHTTCCTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCChhhCCHHHHHHHHHHHH
Confidence 68899999999999999999999999985
No 5
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=96.61 E-value=0.0012 Score=48.60 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=26.0
Q ss_pred HHHhcCCCCCcccccccHHHHHHHHHHH
Q psy17134 20 LLERACVKPVLRPYQLSVQEFGQICLAY 47 (89)
Q Consensus 20 Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY 47 (89)
.|+.++|||+.||-+||++||.+|+.+|
T Consensus 227 ~l~~~~i~~~~R~e~Ls~~~f~~L~~~~ 254 (255)
T 3tqs_A 227 QWPLLEINPQLRPQELTVEDFVKISNIL 254 (255)
T ss_dssp GTGGGTCCTTSCGGGSCHHHHHHHHHHH
T ss_pred HHHHCCcCCCCCceeCCHHHHHHHHHHh
Confidence 4688999999999999999999999886
No 6
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=96.53 E-value=0.0014 Score=48.89 Aligned_cols=30 Identities=13% Similarity=0.157 Sum_probs=27.4
Q ss_pred HHHhcCCCCCcccccccHHHHHHHHHHHHH
Q psy17134 20 LLERACVKPVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 20 Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
.|..++|||+.||-+||++||.+|+.+++.
T Consensus 245 ~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 274 (279)
T 3uzu_A 245 DFDALGFDLARRAEDIGVDEYVRVAQAVAS 274 (279)
T ss_dssp CTTTTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHCCcCCCCCceeCCHHHHHHHHHHHHH
Confidence 567889999999999999999999999864
No 7
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=96.45 E-value=0.001 Score=47.11 Aligned_cols=33 Identities=9% Similarity=-0.058 Sum_probs=30.3
Q ss_pred HHhcCCCCCcccccccHHHHHHHHHHHHHHHHh
Q psy17134 21 LERACVKPVLRPYQLSVQEFGQICLAYRDMCEE 53 (89)
Q Consensus 21 l~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~~ 53 (89)
++.++++|..||-+||+++|.+|+..|..+|.+
T Consensus 212 ~~~~~~~~~~r~~~l~~~~f~~l~~~~~~~~~~ 244 (245)
T 1yub_A 212 HQAMKHAKVNNLSTITYEQVLSIFNSYLLFNGR 244 (245)
T ss_dssp HHHHHHTTCSCTTSCCSHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCCCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 378899999999999999999999999988864
No 8
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=95.59 E-value=0.0071 Score=45.59 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=34.1
Q ss_pred HHHHHHHHhc-----CCCC--CcccccccHHHHHHHHHHHHHHHHhC
Q psy17134 15 QLVVSLLERA-----CVKP--VLRPYQLSVQEFGQICLAYRDMCEEM 54 (89)
Q Consensus 15 elt~~Ll~~A-----dVDP--tlRp~qLsv~ef~~Lc~aY~~~c~~~ 54 (89)
+.+.++|..+ ++|| +.||-+||+++|.+|+.++.+..++.
T Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~~~~~~~ 292 (295)
T 3gru_A 246 DEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYRFLQNR 292 (295)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHHHhhhcc
Confidence 4566778887 8899 99999999999999999998777653
No 9
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=95.58 E-value=0.013 Score=42.94 Aligned_cols=33 Identities=9% Similarity=0.240 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHHHHHHH
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYR 48 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~ 48 (89)
+...+.|..++++ +.||-+||+++|.+|+.++.
T Consensus 246 ~~~~~~l~~~~~~-~~R~e~l~~~~f~~l~~~~~ 278 (285)
T 1zq9_A 246 DKIQQILTSTGFS-DKRARSMDIDDFIRLLHGFN 278 (285)
T ss_dssp HHHHHHHHHHTCT-TCBGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-CCChhhCCHHHHHHHHHHHH
Confidence 4456789999998 67999999999999999874
No 10
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=94.65 E-value=0.045 Score=40.34 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHHHHHHHH
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
+...+.|+.+++++ .||-+||+++|.+|+.++.+
T Consensus 258 ~~~~~~l~~~~~~~-~R~e~l~~~~f~~l~~~~~~ 291 (299)
T 2h1r_A 258 KYCLDVLEHLDMCE-KRSINLDENDFLKLLLEFNK 291 (299)
T ss_dssp HHHHHHHHHTTCTT-CBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCC-CChhhCCHHHHHHHHHHHHh
Confidence 44566789999987 69999999999999998864
No 11
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=94.10 E-value=0.063 Score=36.45 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHHHHHH
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQICLAY 47 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY 47 (89)
-.|..+++.|||||+.|.-+||-+|+.+|..+-
T Consensus 27 ~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 27 TRSKAILAAAGIAEDVKISELSEGQIDTLRDEV 59 (114)
T ss_dssp HHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCcccCcccCCHHHHHHHHHHH
Confidence 568999999999999999999999999998875
No 12
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.96 E-value=0.19 Score=35.56 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHHHHHHHHHHH-hCCCcc
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCE-EMPGLY 58 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~-~~P~L~ 58 (89)
-.|..+++.|||||+.|.-+||-+|+.+|..+-....+ .-|..|
T Consensus 34 ~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~~~~~~iP~w~ 78 (148)
T 3j20_O 34 NFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWA 78 (148)
T ss_dssp HHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHCHHHHCCCTTT
T ss_pred HHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhcccccCCChhh
Confidence 56789999999999999999999999999988765432 245433
No 13
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=91.89 E-value=0.19 Score=35.46 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCCCCcccccccHHHHHHHHHHH
Q psy17134 14 RQLVVSLLERACVKPVLRPYQLSVQEFGQICLAY 47 (89)
Q Consensus 14 Relt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY 47 (89)
+-.|..+++.|||||+.|.-+||-+|+.+|..+=
T Consensus 40 ~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i 73 (146)
T 3u5c_S 40 RRYSNLVCKKADVDLHKRAGELTQEELERIVQIM 73 (146)
T ss_dssp HHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHH
Confidence 3578999999999999999999999999998763
No 14
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=91.62 E-value=0.15 Score=35.20 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHHHHHHH
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYR 48 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~ 48 (89)
-.|..+++.|||||+.|.-+||-+|+.+|..+-.
T Consensus 28 ~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~ 61 (126)
T 2vqe_M 28 ARAKEALEKTGINPATRVKDLTEAEVVRLREYVE 61 (126)
T ss_dssp HHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999998765
No 15
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=91.59 E-value=0.21 Score=35.44 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHHHHHH
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQICLAY 47 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY 47 (89)
-.|..+++.|||||+.|.-+||-+|+.+|..+=
T Consensus 39 ~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i 71 (152)
T 3iz6_M 39 RFSNIVCKKADIDMNKRAGELSAEEMDRLMAVV 71 (152)
T ss_dssp HHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHH
Confidence 457889999999999999999999999998753
No 16
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=91.47 E-value=0.27 Score=34.99 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHHHHHHHHH-HHhCCCcc
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDM-CEEMPGLY 58 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~-c~~~P~L~ 58 (89)
-.|..+++.|||||+.|.-+||-+|+.+|..+...- --..|..|
T Consensus 41 ~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~p~~~~iP~w~ 85 (155)
T 2xzm_M 41 RFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADPEAHGIPTWL 85 (155)
T ss_dssp HHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHSHHHHCCCGGG
T ss_pred HHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhCccccCCCHHH
Confidence 467899999999999999999999999999887642 22456544
No 17
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=89.25 E-value=0.19 Score=39.06 Aligned_cols=43 Identities=16% Similarity=0.075 Sum_probs=29.5
Q ss_pred cccccCChhhHHHHHHHHH-hcCCCCCcccccccHHHHHHHHHHHHH
Q psy17134 4 WAILLFPKRKRQLVVSLLE-RACVKPVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 4 g~~~LFP~~~Relt~~Ll~-~AdVDPtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
.++.|+|.+ .+...+.+. .+++ ..||.+||++||.+|+.+|.+
T Consensus 289 ~L~~l~~~~-~~~l~~~l~~~~~i--~~R~e~Ls~e~f~~L~~~~~~ 332 (353)
T 1i4w_A 289 VMDSLGHGG-QQYFNSRITDKDLL--KKCPIDLTNDEFIYLTKLFME 332 (353)
T ss_dssp GGGGSSTTH-HHHHTTTCCCCTTT--SSCGGGCCHHHHHHHHHHHHT
T ss_pred HHHhhcccc-HHHHHHHhhhhcCc--ccChhhCCHHHHHHHHHHHHh
Confidence 466677742 221122333 5666 499999999999999999963
No 18
>2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A
Probab=85.85 E-value=0.4 Score=32.98 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=29.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHhCCCccccccCCCCCC
Q psy17134 31 RPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTPGD 68 (89)
Q Consensus 31 Rp~qLsv~ef~~Lc~aY~~~c~~~P~L~~YdyR~~~~~ 68 (89)
--|+.|.+---.|-.+-+.||++||+.-.|++|+.|-.
T Consensus 37 aqfeIS~s~Ay~I~~~lk~iCE~h~~eC~~~~K~rKtv 74 (118)
T 2cmx_A 37 AQFEISVPSAYNIQRALKAICERHPDECEVQYKNRKTT 74 (118)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHCTTTEEEEECSSCEE
T ss_pred HHhccchhhhhHHHHHHHHHHHhCcchhhhhhccchHH
Confidence 34555555556677778899999999999999998654
No 19
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=85.71 E-value=1.3 Score=33.78 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCCCcccccccHHHHHHHHHHHHHHHHh
Q psy17134 17 VVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEE 53 (89)
Q Consensus 17 t~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~~ 53 (89)
+.|.|=+|+|+|.+..-.||-+++.+|..+-++++.+
T Consensus 189 adEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~~vL~~ 225 (310)
T 3twl_A 189 ADEVLYQARIHPLQTASSLSKEQCEALHTSIKEVIEK 225 (310)
T ss_dssp HHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999999988865
No 20
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=85.40 E-value=1.5 Score=32.65 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCCcccccccHHHHHHHHHHHHHHHHh
Q psy17134 17 VVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEE 53 (89)
Q Consensus 17 t~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~~ 53 (89)
+.|.|=+|+|+|.+..-.||-+++.+|..+=++++.+
T Consensus 174 adEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~vL~~ 210 (271)
T 2xzf_A 174 VDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQK 210 (271)
T ss_dssp HHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999999999999999988864
No 21
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=85.22 E-value=1.4 Score=32.85 Aligned_cols=37 Identities=24% Similarity=0.125 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCCCcccccccHHHHHHHHHHHHHHHHh
Q psy17134 17 VVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEE 53 (89)
Q Consensus 17 t~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~~ 53 (89)
+.|.|=+|+|+|.+..-.||-+++.+|..+=++++.+
T Consensus 176 a~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~vL~~ 212 (273)
T 3u6p_A 176 VDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGE 212 (273)
T ss_dssp HHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCccccCCHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999887
No 22
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=85.03 E-value=1.5 Score=32.45 Aligned_cols=39 Identities=10% Similarity=0.052 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCCcccccccHHHHHHHHHHHHHHHHhCC
Q psy17134 17 VVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMP 55 (89)
Q Consensus 17 t~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~~~P 55 (89)
+.|.|=+|+|+|.+..-.||-+++.+|..+=+..+.+--
T Consensus 171 adEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~vl~~ai 209 (262)
T 1k3x_A 171 RVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSY 209 (262)
T ss_dssp HHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 578888999999999999999999999999988887643
No 23
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=84.99 E-value=1.6 Score=32.52 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCCCcccccccHHHHHHHHHHHHHHHHhC
Q psy17134 17 VVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEM 54 (89)
Q Consensus 17 t~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~~~ 54 (89)
+.|.|=+|+|+|.+..-.||-+++.+|..+=++++.+-
T Consensus 164 a~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~vL~~a 201 (266)
T 1ee8_A 164 ADEALFRARLSPFRPARSLTEEEARRLYRALREVLAEA 201 (266)
T ss_dssp HHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999988764
No 24
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=84.79 E-value=1.6 Score=32.51 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCCCcccccccHHHHHHHHHHHHHHHHhC
Q psy17134 17 VVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEM 54 (89)
Q Consensus 17 t~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~~~ 54 (89)
+.|.|=+|+|+|.+..-.||-+++.+|..+=++++.+-
T Consensus 171 a~EiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~vL~~a 208 (268)
T 1k82_A 171 ASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRS 208 (268)
T ss_dssp HHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999888764
No 25
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=82.06 E-value=2.3 Score=32.19 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCCCcccccccHHHHHHHHHHHHHHHH
Q psy17134 17 VVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCE 52 (89)
Q Consensus 17 t~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~ 52 (89)
+.|.|=+|+|+|.+..-.||-+++.+|..+=+.++.
T Consensus 176 a~EiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~~vL~ 211 (295)
T 3vk8_A 176 VAEILYRAKIDPHKLGSNLTDQEIENLWYWIKYETK 211 (295)
T ss_dssp HHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCccccCCHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999887
No 26
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=79.28 E-value=1.4 Score=35.14 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHHHHHHHHH
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDM 50 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~ 50 (89)
..|.+++..+++||.++|..|+.++..+|-.|.+++
T Consensus 269 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (471)
T 1mu5_A 269 TTADKILELAGLKPNKKVKNLTEEEITRLVETFKKY 304 (471)
T ss_dssp HHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999998864
No 27
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=72.69 E-value=5.5 Score=30.45 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=32.2
Q ss_pred HHHHHHhcCCCCCcccccccHHHHHHHHHHHHHHHH
Q psy17134 17 VVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCE 52 (89)
Q Consensus 17 t~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~ 52 (89)
+.|.|=+|+|+|.+..-.||-+++.+|..+=+++..
T Consensus 195 a~EiLf~AgI~P~~~~~~Ls~~~~~~L~~ai~~Vl~ 230 (287)
T 3w0f_A 195 KNEALFDSGLHPAVKVCQLSDKQACHLVKMTRDFSI 230 (287)
T ss_dssp HHHHHHHHTCCTTCBGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCccCccccCCHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999887753
No 28
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=70.51 E-value=2.6 Score=26.08 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=18.7
Q ss_pred cCCCCCcccccccHHHHHHH
Q psy17134 24 ACVKPVLRPYQLSVQEFGQI 43 (89)
Q Consensus 24 AdVDPtlRp~qLsv~ef~~L 43 (89)
.||||+.+-.-||-++|.++
T Consensus 22 ~gVD~~~lE~yLsdedF~~v 41 (67)
T 2k6m_S 22 EGVDPLKLEIYLTDEDFEFA 41 (67)
T ss_dssp SSSBTTBCGGGSCHHHHHHH
T ss_pred CCCCchHHHhhCCHHHHHHH
Confidence 69999999999999999876
No 29
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=68.06 E-value=3.6 Score=25.55 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=19.2
Q ss_pred cCCCCCcccccccHHHHHHHH
Q psy17134 24 ACVKPVLRPYQLSVQEFGQIC 44 (89)
Q Consensus 24 AdVDPtlRp~qLsv~ef~~Lc 44 (89)
.||||+.+-.-||-++|.++=
T Consensus 22 ~gVD~~~lE~yLsdedF~~vF 42 (67)
T 1yu8_X 22 RGVDPSAKENHLSDEDFKAVF 42 (67)
T ss_dssp TTCCTTCGGGGSCHHHHHHHH
T ss_pred cccChHHHHhcCCHHHHHHHH
Confidence 799999999999999998863
No 30
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=66.27 E-value=3.2 Score=25.67 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=18.4
Q ss_pred cCCCCCcccccccHHHHHHH
Q psy17134 24 ACVKPVLRPYQLSVQEFGQI 43 (89)
Q Consensus 24 AdVDPtlRp~qLsv~ef~~L 43 (89)
.||||+.+-.-||-++|.++
T Consensus 23 ~gVD~~~lE~yLsdedF~~v 42 (68)
T 1qzp_A 23 PGVDRMRLERHLSAEDFSRV 42 (68)
T ss_dssp SSCCGGGCGGGBCHHHHHHH
T ss_pred CCCCchHHHhhCCHHHHHHH
Confidence 59999999999999999876
No 31
>2asw_A Hypothetical protein AF1503; homodimer, parallel coiled-coil, complementary X-DA packing, unknown function; NMR {Archaeoglobus fulgidus} SCOP: a.274.1.1 PDB: 2asx_A
Probab=55.12 E-value=19 Score=17.99 Aligned_cols=39 Identities=10% Similarity=-0.021 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCCcccccc-cHHHHHHHHHHHHHHHHh
Q psy17134 15 QLVVSLLERACVKPVLRPYQL-SVQEFGQICLAYRDMCEE 53 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qL-sv~ef~~Lc~aY~~~c~~ 53 (89)
.++..+-+.+.=|-+.+...- +..|+..|+.++..|.++
T Consensus 11 ~l~~~~~~i~~g~~~~~~~~~~~~dEi~~l~~~~n~m~~~ 50 (56)
T 2asw_A 11 ELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRS 50 (56)
T ss_dssp HHHHHHHHHHTTCTTCCCTTTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCCCCCCCchHHHHHHHHHHHHHH
Confidence 455555555655555443333 567999999999999875
No 32
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=54.92 E-value=11 Score=25.59 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=30.0
Q ss_pred CCcccccccHHHHHHHHHHHHHHHHhCCCccccccCCCC
Q psy17134 28 PVLRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTP 66 (89)
Q Consensus 28 PtlRp~qLsv~ef~~Lc~aY~~~c~~~P~L~~YdyR~~~ 66 (89)
.-+--|++|++---++-.+-+-+|++||+=-.-.|...+
T Consensus 34 dilaqfeis~~sayniqr~l~~ice~hpdecevq~knr~ 72 (118)
T 2vqc_A 34 DILAQFEISVPSAYNIQRALKAICERHPDECEVQYKNRK 72 (118)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHCTTTEEEEECSSC
T ss_pred HHHHHheeccchHhHHHHHHHHHHhcCCchhheeecchh
Confidence 345567888888888888999999999997765555543
No 33
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=52.21 E-value=5.7 Score=25.84 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=18.8
Q ss_pred cCCCCCcccccccHHHHHHHH
Q psy17134 24 ACVKPVLRPYQLSVQEFGQIC 44 (89)
Q Consensus 24 AdVDPtlRp~qLsv~ef~~Lc 44 (89)
.||||+.+-.-||-++|..+=
T Consensus 37 ~gVD~tklE~YLSdedF~~vF 57 (88)
T 1ujs_A 37 KDVDRTRLERHLSQEEFYQVF 57 (88)
T ss_dssp SSCCTTTGGGGSCTTHHHHHH
T ss_pred cccCHHHHHhcCCHHHHHHHH
Confidence 699999999999999998763
No 34
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=51.84 E-value=19 Score=25.63 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=22.9
Q ss_pred HHHHhcCCCCCcccccccHHHHHHHHHHHHH
Q psy17134 19 SLLERACVKPVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 19 ~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
.||+.|||+|..-|- |.+||..+|...+.
T Consensus 134 dlf~~aGl~~~~~p~--Twde~~~~a~~~~~ 162 (419)
T 4aq4_A 134 DAFKKAGLDPEQPPK--TWQDLADYAAKLKA 162 (419)
T ss_dssp HHHHHTTCCTTCCCS--BHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCC--CHHHHHHHHHHHhc
Confidence 689999999765443 88999999986553
No 35
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=42.30 E-value=26 Score=25.10 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.1
Q ss_pred HHHHhcCCC--CCcccccccHHHHHHHHHHHHH
Q psy17134 19 SLLERACVK--PVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 19 ~Ll~~AdVD--PtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
.||+.+||+ |+ |.++|..+|...++
T Consensus 133 dl~~~~G~~~~P~------Twdel~~~~~~~~~ 159 (405)
T 3i3v_A 133 ALLDRAGVDAIPT------TGDQLIAAARKLRA 159 (405)
T ss_dssp HHHHHHTCCSCCC------BHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCC------CHHHHHHHHHHHHH
Confidence 688999998 43 89999999998875
No 36
>2it9_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; HET: MSE PGE; 1.80A {Prochlorococcus marinus} SCOP: d.18.1.3
Probab=37.37 E-value=22 Score=24.59 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=22.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHhCCCc
Q psy17134 31 RPYQLSVQEFGQICLAYRDMCEEMPGL 57 (89)
Q Consensus 31 Rp~qLsv~ef~~Lc~aY~~~c~~~P~L 57 (89)
-+++||-.||+++|..-.++.+.+-.+
T Consensus 30 WAiELTe~E~~~f~~Ll~qL~~~~~~i 56 (127)
T 2it9_A 30 WAIELDKSEWKILVEVVMELCDQYKLV 56 (127)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeecHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999988876443
No 37
>3hf5_A 4-methylmuconolactone methylisomerase; ferredoxin, ferredoxin-like fold, beta-barrel, biodegradation, ortho- cleavage; HET: 3ML; 1.40A {Pseudomonas reinekei} SCOP: d.58.4.19 PDB: 3hds_A* 3hfk_A* 2ifx_A*
Probab=36.95 E-value=27 Score=22.79 Aligned_cols=35 Identities=29% Similarity=0.579 Sum_probs=30.7
Q ss_pred cccccccHHHHHHHHHHHHHHHHhCCCccccccCC
Q psy17134 30 LRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 64 (89)
Q Consensus 30 lRp~qLsv~ef~~Lc~aY~~~c~~~P~L~~YdyR~ 64 (89)
.|+--||-++|.+=......++.+.|+|..|.-+-
T Consensus 18 ~Rk~gmS~EeF~~~w~~Hapla~~lpGl~~Y~q~~ 52 (116)
T 3hf5_A 18 VKPESMSHEQFRKECVVHFQMSAGMPGLHKYEVRL 52 (116)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHTTTCTTCSEEEEEE
T ss_pred ecCCCcCHHHHHHHHHHHHHHHHhCcCCccEEEEE
Confidence 47788999999998889999999999999997544
No 38
>2nvn_A Hypothetical protein; structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 2.50A {Synechococcus elongatus} SCOP: d.18.1.3
Probab=36.60 E-value=20 Score=24.56 Aligned_cols=28 Identities=14% Similarity=0.387 Sum_probs=24.2
Q ss_pred ccccccHHHHHHHHHHHHHHHHhCCCcc
Q psy17134 31 RPYQLSVQEFGQICLAYRDMCEEMPGLY 58 (89)
Q Consensus 31 Rp~qLsv~ef~~Lc~aY~~~c~~~P~L~ 58 (89)
-+++||-.||+++|.--.++.+.+-.+.
T Consensus 32 WAiELTe~E~~~f~~Ll~qL~~~~~~i~ 59 (122)
T 2nvn_A 32 WAVELTAAEMADFCRLVQQLAETIAAIA 59 (122)
T ss_dssp CEEEECHHHHHHHHHHHHHHHHHHHTSC
T ss_pred hheeeCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999998876554
No 39
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=33.85 E-value=41 Score=27.25 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHHHHHHHHH
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDM 50 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~ 50 (89)
.-+..+.+.++++|..+|..||-+++.+|..|-..+
T Consensus 268 ~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~~ 303 (530)
T 2zbk_B 268 TTADKILELAGLKPNKKVKNLTEEEITRLVETFKKD 303 (530)
T ss_dssp HHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHhc
Confidence 557778888999999999999999999999998753
No 40
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=33.78 E-value=46 Score=22.30 Aligned_cols=42 Identities=10% Similarity=0.041 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHH------H-HHHHHHHHHhCCC
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQ------I-CLAYRDMCEEMPG 56 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~------L-c~aY~~~c~~~P~ 56 (89)
..|.+.++..|||...||-|||-++|.. + +..++.++...|.
T Consensus 56 p~a~~~l~e~Gid~s~~ar~l~~~~~~~~DlIi~M~~~~~~~l~~~~p~ 104 (161)
T 2cwd_A 56 PRARRVLEEEGAYFPHVARRLTREDVLAYDHILVMDRENLEEVLRRFPE 104 (161)
T ss_dssp HHHHHHHHHHTCCCCCCCCBCCHHHHHHCSEEEESSHHHHHHHHHHCGG
T ss_pred HHHHHHHHHcCcCccccccCCCHhHhccCCEEEECChHHHHHHHHHCCC
Confidence 7788999999999889999999999876 3 3467777777775
No 41
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=33.54 E-value=49 Score=22.29 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHH-------HHHHHHHHHhCC
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQI-------CLAYRDMCEEMP 55 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~L-------c~aY~~~c~~~P 55 (89)
..|.+.++..|||...||-|||-++|..- ...++.+....|
T Consensus 57 ~~a~~~l~~~Gid~~~~ar~l~~~~~~~~DlIi~M~~~n~~~l~~~~p 104 (157)
T 3n8i_A 57 YRGQSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSN 104 (157)
T ss_dssp HHHHHHHHHTTCCCCCCCCBCCHHHHHHCSEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcCCCCceeECCHHHcCCCCEEEEeCcHHHHHHHHHCC
Confidence 67889999999999999999999888752 345666666666
No 42
>3p9a_A DNA-packaging protein GP3; terminase small subunit, bacteriophage P22, D binding protein; 1.75A {Enterobacteria phage P22}
Probab=32.91 E-value=41 Score=24.11 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=23.9
Q ss_pred ccccccHHHHHHHHHHHHHHHHhCCCcc
Q psy17134 31 RPYQLSVQEFGQICLAYRDMCEEMPGLY 58 (89)
Q Consensus 31 Rp~qLsv~ef~~Lc~aY~~~c~~~P~L~ 58 (89)
-|.--|-|++-++|.-|=++|+++|=+.
T Consensus 19 ~p~f~tPEeL~~aa~eYFeWcE~Npl~e 46 (162)
T 3p9a_A 19 NPKFESPEALWAACCEYFEWVEANPLWE 46 (162)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHHSCEEE
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhchHhh
Confidence 3566789999999999999999999543
No 43
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=31.35 E-value=56 Score=21.97 Aligned_cols=41 Identities=7% Similarity=0.072 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHH------H-HHHHHHHHHhCC
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQ------I-CLAYRDMCEEMP 55 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~------L-c~aY~~~c~~~P 55 (89)
..|.+.++..|||...||-|||-++|.. + +..++.++...|
T Consensus 56 ~~a~~~l~~~Gid~~~~ar~l~~~~~~~~DlIl~Md~~~~~~l~~~~p 103 (161)
T 3jvi_A 56 SRMRKVGKSRGYQVDSISRPVVSSDFKNFDYIFAMDNDNYYELLDRCP 103 (161)
T ss_dssp HHHHHHHHHTTCCCCCBCCBCCHHHHHHCSEEEESSHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCcCCCCeeeECCHHHhcCCCEEEEeChHHHHHHHHhcC
Confidence 6788999999999999999999998876 3 347888888888
No 44
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=30.77 E-value=12 Score=29.52 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=31.9
Q ss_pred HHHHHHhcCCCCCcccccccHH--------------------HHHHHHHHHHHHHHh
Q psy17134 17 VVSLLERACVKPVLRPYQLSVQ--------------------EFGQICLAYRDMCEE 53 (89)
Q Consensus 17 t~~Ll~~AdVDPtlRp~qLsv~--------------------ef~~Lc~aY~~~c~~ 53 (89)
+.|.|=+|+|+|.+..-.||-+ ++.+|..+=+..+.+
T Consensus 179 adEiLF~AgIhP~r~a~~Ls~~~~~~~~~~~~~~~~k~~~~~e~~~L~~ai~~VL~~ 235 (364)
T 1tdh_A 179 RAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKE 235 (364)
T ss_dssp HHHHHHHHTCCTTSBHHHHHGGGC-----CCSCHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHCcCCCCCChhhcCHHHhccccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 5788889999999999999997 888888888877765
No 45
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=30.73 E-value=1e+02 Score=19.51 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHH--HHHHHHHHHhCCCc
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQI--CLAYRDMCEEMPGL 57 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~L--c~aY~~~c~~~P~L 57 (89)
--+.++|..+||. |+++++.+ ..+|.++|...+++
T Consensus 14 ~~~e~~L~~~GI~--------t~~~Lr~~Ga~~ay~rLk~~~~~~ 50 (93)
T 3mab_A 14 KVLEQDLIKAGIK--------TPVELKDVGSKEAFLRIWENDSSV 50 (93)
T ss_dssp HHHHHHHHHTTCC--------SHHHHHHHCHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCC--------CHHHHHhCCHHHHHHHHHHhCCCC
Confidence 4567889999997 78888887 57899999887764
No 46
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=29.64 E-value=58 Score=23.35 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=20.6
Q ss_pred HHHHhcCCCCCcccccccHHHHHHHHHHHHH
Q psy17134 19 SLLERACVKPVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 19 ~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
.||+.|||+|-. |.+||..+|...++
T Consensus 128 dl~~~aGl~~P~-----Twdel~~~a~~l~~ 153 (408)
T 2uvj_A 128 ATWAKAGLEYPK-----TWDELLAAGKVFKE 153 (408)
T ss_dssp HHHHHHTCCCCS-----SHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCC-----CHHHHHHHHHHHHh
Confidence 578899997522 88999999988765
No 47
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=29.50 E-value=53 Score=24.63 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHHHHHHHH
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
.+...+++.++|||..+--+++-.+..+|+...+.
T Consensus 334 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 368 (447)
T 2i0z_A 334 RYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKE 368 (447)
T ss_dssp HHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCCchhhCCHHHHHHHHHHhhC
Confidence 46777888899999998899999999888766554
No 48
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=29.28 E-value=62 Score=23.27 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=19.7
Q ss_pred HHHHhcCCCCCcccccccHHHHHHHHHHHHH
Q psy17134 19 SLLERACVKPVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 19 ~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
.+|+.|||+|-. |.++|..+|...++
T Consensus 129 dl~~~aGl~~P~-----Twdel~~~~~~l~~ 154 (400)
T 2b3f_A 129 AKLKGWGVNPPR-----TWDKFLATCQTLKQ 154 (400)
T ss_dssp HHHHHTTCCCCS-----SHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCC-----CHHHHHHHHHHHHH
Confidence 578889997422 88999998887764
No 49
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=29.10 E-value=62 Score=23.37 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=21.0
Q ss_pred HHHHhcCCC-CCcccccccHHHHHHHHHHHHH
Q psy17134 19 SLLERACVK-PVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 19 ~Ll~~AdVD-PtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
.||+.|||+ |-. |.++|..+|...+.
T Consensus 139 dl~~~aGl~~~P~-----Twdel~~~~~~l~~ 165 (412)
T 2z8f_A 139 AEFEKLGITEIPQ-----TADEFIAAAKTAAA 165 (412)
T ss_dssp HHHHHTTCCSCCC-----BHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCC-----CHHHHHHHHHHHHh
Confidence 688999998 321 89999999988875
No 50
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A
Probab=28.71 E-value=63 Score=22.48 Aligned_cols=43 Identities=7% Similarity=-0.047 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHH------H-HHHHHHHHHhCCCc
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQ------I-CLAYRDMCEEMPGL 57 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~------L-c~aY~~~c~~~P~L 57 (89)
..|.+.++..|||...||-||+-+.|.. + +..++.++...|..
T Consensus 83 p~a~~vl~e~Gidishrar~lt~~d~~~~DlIltMd~~~~~~l~~~~P~~ 132 (184)
T 4etn_A 83 PHAVEALFEKHIALNHVSSPLTEELMESADLVLAMTHQHKQIIASQFGRY 132 (184)
T ss_dssp HHHHHHHHHTTCCCCCBCCBCCHHHHHHCSEEEESSHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHcCCCchhccCcCCHHHcCCCCEEEEcCcHHHHHHHHHCCCc
Confidence 7889999999999999999999998875 3 34677788888853
No 51
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=27.53 E-value=68 Score=22.96 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=21.1
Q ss_pred HHHHhcCCC-CCcccccccHHHHHHHHHHHHH
Q psy17134 19 SLLERACVK-PVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 19 ~Ll~~AdVD-PtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
.||+.+||+ |-. |.++|..+|...++
T Consensus 146 dl~~~~G~~~~P~-----Twdel~~~~~~l~~ 172 (414)
T 3quf_A 146 DILKKAGYDKFPK-----TWDEFIEMGKKINS 172 (414)
T ss_dssp HHHHHTTCSSCCS-----BHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCC-----CHHHHHHHHHHHHH
Confidence 688999998 322 89999999988775
No 52
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=27.53 E-value=29 Score=23.31 Aligned_cols=44 Identities=7% Similarity=0.055 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCCCCccccccc-----HHHHHHHHHHHHHHHHh-CCCcc
Q psy17134 15 QLVVSLLERACVKPVLRPYQLS-----VQEFGQICLAYRDMCEE-MPGLY 58 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLs-----v~ef~~Lc~aY~~~c~~-~P~L~ 58 (89)
+.|.+||+.||...-..++.|+ ......++.+.+.++++ -|+|.
T Consensus 81 ~kAk~LL~eaG~~~g~~~l~l~l~~~~~~~~~~~a~~i~~~l~~~i~GI~ 130 (229)
T 3o6p_A 81 KKAKEYWEKAKKELGISTLTMDILSSDADSSKKTVEFVQGSIQDALDGVK 130 (229)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEEEEECSHHHHHHHHHHHHHHHHHSTTEE
T ss_pred HHHHHHHHHcCcccCCCceEEEEEeCCChHHHHHHHHHHHHHHHhCCCcE
Confidence 8889999999653221222332 24578899999999998 67764
No 53
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=27.18 E-value=6 Score=27.88 Aligned_cols=30 Identities=13% Similarity=-0.114 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCCcccccccHHHHHHHHHH
Q psy17134 16 LVVSLLERACVKPVLRPYQLSVQEFGQICLA 46 (89)
Q Consensus 16 lt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~a 46 (89)
.|.++++.+|| |..|.-+||-+|+.+|.++
T Consensus 74 ~A~~I~~~~gI-~~~rv~~Lte~ei~~l~~~ 103 (145)
T 3bbn_M 74 RSRQILLDLNF-DNKVTKDLSEEEVIILRKE 103 (145)
T ss_dssp TTTGGGTTTTC-CSCBTTSCCSSTTHHHHSS
T ss_pred HHHHHHHHcCC-CceEcCCCCHHHHHHHHHH
Confidence 45678999999 8999999999999999876
No 54
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=26.42 E-value=71 Score=22.96 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=20.8
Q ss_pred HHHHhcCCCCCcccccccHHHHHHHHHHHHH
Q psy17134 19 SLLERACVKPVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 19 ~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
.||+.+|++| | =|.++|..+|..++.
T Consensus 136 dl~~~aGl~~---P--~Twdel~~~~~~l~~ 161 (401)
T 2heu_A 136 DKFEELGLKV---P--ETWDEFEQLVKDIVA 161 (401)
T ss_dssp HHHHHHTCCC---C--CSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCC---C--CCHHHHHHHHHHHHH
Confidence 5788999975 2 288999999988864
No 55
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=26.21 E-value=1.2e+02 Score=22.76 Aligned_cols=45 Identities=29% Similarity=0.434 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHHHHHHHHHHHhCCCcccc
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPGLYEY 60 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~~~P~L~~Y 60 (89)
++-.+|++..+..|. +.++|+.+++..||..=+++..+.|.+-.-
T Consensus 10 ~~i~~l~~~~~~~~~-~~~~l~~~~~~~l~~~~~~il~~ep~ll~~ 54 (299)
T 3e7a_A 10 SIIGRLLEVQGSRPG-KNVQLTENEIRGLCLKSREIFLSQPILLEL 54 (299)
T ss_dssp HHHHHHHTTTTSCTT-CCCCCCHHHHHHHHHHHHHHHHHSCSEEEE
T ss_pred HHHHHHHhccccCCC-cccCCCHHHHHHHHHHHHHHHHhCCCeeec
Confidence 455666665555554 568899999999999999999999988654
No 56
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=26.04 E-value=75 Score=21.63 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCC--------CCccccccc----HHHHHHHHHHHHHHHHh
Q psy17134 15 QLVVSLLERACVK--------PVLRPYQLS----VQEFGQICLAYRDMCEE 53 (89)
Q Consensus 15 elt~~Ll~~AdVD--------PtlRp~qLs----v~ef~~Lc~aY~~~c~~ 53 (89)
+.|.+||+.||.. |.-.|+.|+ .....+++.+.+.++++
T Consensus 103 ~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~~~~~~~~~~~~a~~iq~~l~~ 153 (259)
T 3pam_A 103 QKAWKLLQEAGFTKKNNRLIAPNGLPFQFEIMTQSLEEEKVALAFQSNLSR 153 (259)
T ss_dssp HHHHHHHHHTTCEEETTEEECTTSCBCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCccCCCcEECCCCcEEEEEEEeCCchHHHHHHHHHHHHHH
Confidence 8999999999985 233444442 25788999999999887
No 57
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=25.81 E-value=69 Score=21.34 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHH-----HH-HHHHHHHHHhCCCc
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFG-----QI-CLAYRDMCEEMPGL 57 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~-----~L-c~aY~~~c~~~P~L 57 (89)
..|.+.++..|||...||-||+-++|. -+ +..++.++...|..
T Consensus 56 p~a~~~l~~~Gid~s~~ar~l~~~~~~~DlIi~Md~~~~~~l~~~~p~~ 104 (163)
T 1u2p_A 56 ERAAGVLRAHGYPTDHRAAQVGTEHLAADLLVALDRNHARLLRQLGVEA 104 (163)
T ss_dssp HHHHHHHHHTTCCCCCCCCBCCHHHHTSSEEEESSHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHcCcCCCceeeECChhhccCCEEEEeCHHHHHHHHHHCCCc
Confidence 778899999999988999999988886 34 45678888888873
No 58
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=25.21 E-value=83 Score=21.37 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCC--------CcccccccH------HHHHHHHHHHHHHHHh
Q psy17134 15 QLVVSLLERACVKP--------VLRPYQLSV------QEFGQICLAYRDMCEE 53 (89)
Q Consensus 15 elt~~Ll~~AdVDP--------tlRp~qLsv------~ef~~Lc~aY~~~c~~ 53 (89)
+.|.+||+.||... .-.|+.|++ .....++.+.+.++++
T Consensus 102 ~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~ 154 (258)
T 3lvu_A 102 RRAAQFLEQAGFRIEQGQLLGPDGAPLALRFLLRQGDSDMQTVLEIYTRALER 154 (258)
T ss_dssp HHHHHHHHHTTCEEETTEEECTTSSBCCCEEEEETTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEeCCCcEECCCCcEEEEEEEecCCChhHHHHHHHHHHHHHH
Confidence 89999999999842 334444432 5788999999999887
No 59
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=24.52 E-value=99 Score=17.21 Aligned_cols=39 Identities=10% Similarity=0.006 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCCcccccc-cHHHHHHHHHHHHHHHHh
Q psy17134 15 QLVVSLLERACVKPVLRPYQL-SVQEFGQICLAYRDMCEE 53 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qL-sv~ef~~Lc~aY~~~c~~ 53 (89)
.++..+-+.+.=|-+.+...- +..|++.|+.++..|.+.
T Consensus 13 ~l~~~~~~i~~gdl~~~~~~~~~~dEi~~l~~~~n~m~~~ 52 (115)
T 3zrx_A 13 ELSNTFDKIAEGNLEAEVPHQNRADEIGILAKSIERLRRS 52 (115)
T ss_dssp HHHHHHHHHHTTCTTCCCTTTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccccCCCCCCchHHHHHHHHHHHHHHH
Confidence 556666666655655544333 578999999999999876
No 60
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=23.55 E-value=1.1e+02 Score=17.20 Aligned_cols=39 Identities=10% Similarity=-0.012 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCCccccccc-HHHHHHHHHHHHHHHHh
Q psy17134 15 QLVVSLLERACVKPVLRPYQLS-VQEFGQICLAYRDMCEE 53 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLs-v~ef~~Lc~aY~~~c~~ 53 (89)
.++..+-+.+.=|.+.+...-+ ..|++.|+.++..|.++
T Consensus 13 ~l~~~~~~i~~g~~~~~~~~~~~~dEi~~l~~~~n~m~~~ 52 (114)
T 3zcc_A 13 ELSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRS 52 (114)
T ss_dssp HHHHHHHHHHTTCTTCCCTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 5555555666556555444445 68999999999999876
No 61
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=23.12 E-value=39 Score=20.58 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=19.1
Q ss_pred CCcccccccHHHHHHHHHHHHHH
Q psy17134 28 PVLRPYQLSVQEFGQICLAYRDM 50 (89)
Q Consensus 28 PtlRp~qLsv~ef~~Lc~aY~~~ 50 (89)
|+..-+.||.+||..|+.+-.++
T Consensus 37 PgkKGIsL~~~qw~~l~~~~~~I 59 (66)
T 1pcf_A 37 PGRKGISLNPEQWSQLKEQISDI 59 (66)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCccccccCHHHHHHHHHHHHHH
Confidence 66677899999999999876654
No 62
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=23.10 E-value=88 Score=22.45 Aligned_cols=27 Identities=11% Similarity=0.067 Sum_probs=20.5
Q ss_pred HHHHhcCCCCCcccccccHHHHHHHHHHHHH
Q psy17134 19 SLLERACVKPVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 19 ~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
.||+.|||+.. | =|.+||..+|.+.++
T Consensus 156 dlf~~aGl~~p--P--~Twde~~~~~~~l~~ 182 (433)
T 4gqo_A 156 DTLKELGYDAP--P--KTYSEALEVGKKLKA 182 (433)
T ss_dssp HHHHHTTCSSC--C--CBHHHHHHHHHHHHH
T ss_pred hhHHHcCCCCC--C--CCHHHHHHHHHHHHH
Confidence 68999999732 1 278999999987654
No 63
>2fbd_A Lysozyme 1; digestive lysozime, hydrolase; HET: PEG; 1.90A {Musca domestica} PDB: 2h5z_A* 3cb7_A
Probab=22.95 E-value=82 Score=21.03 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=18.9
Q ss_pred hH-HHHHHHHHhcCCCCCcccccccHHHHHHHHH
Q psy17134 13 KR-QLVVSLLERACVKPVLRPYQLSVQEFGQICL 45 (89)
Q Consensus 13 ~R-elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~ 45 (89)
.| |||.+|. ..+|+|.+ +.+|.-|+.
T Consensus 4 ~rCela~~L~-~~g~~~~~------L~~Wvcia~ 30 (122)
T 2fbd_A 4 TRCSLAREMY-ALGVPKSE------LPQWTCIAE 30 (122)
T ss_dssp CHHHHHHHHH-HTTCCGGG------HHHHHHHHH
T ss_pred cHhHHHHHHH-HcCCCHHH------hccceeeee
Confidence 37 9999988 45999987 556655543
No 64
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.92 E-value=93 Score=18.79 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=15.0
Q ss_pred HHHhcCCCCCcccccccHHHHHHHHHHHHHHHHh-CCCc
Q psy17134 20 LLERACVKPVLRPYQLSVQEFGQICLAYRDMCEE-MPGL 57 (89)
Q Consensus 20 Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~~-~P~L 57 (89)
.++.-||+|.. |.++ |-.||++++.+ ||+-
T Consensus 29 ~y~iLgv~~~a-----s~~e---Ik~aYr~la~~~HPDk 59 (90)
T 2ys8_A 29 SWDMLGVKPGA-----SRDE---VNKAYRKLAVLLHPDK 59 (90)
T ss_dssp HHHHHTCCTTC-----CHHH---HHHHHHHHHHHHCTTT
T ss_pred HHHHcCcCCCC-----CHHH---HHHHHHHHHHHHCcCC
Confidence 34555666542 3333 33566666543 6663
No 65
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.72 E-value=64 Score=19.31 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=19.4
Q ss_pred CCCCcccccccHHHHHHHHHHHHHHHH
Q psy17134 26 VKPVLRPYQLSVQEFGQICLAYRDMCE 52 (89)
Q Consensus 26 VDPtlRp~qLsv~ef~~Lc~aY~~~c~ 52 (89)
.+|..-+-.-..+.|..|..||.-+.+
T Consensus 35 ~HPDk~~~~~a~~~f~~i~~Ay~~L~d 61 (88)
T 2ctr_A 35 YHPDKNKSPDAEAKFREIAEAYETLSD 61 (88)
T ss_dssp TCTTTCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HCcCCCCChHHHHHHHHHHHHHHHHCC
Confidence 355555544567889999999997765
No 66
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=22.62 E-value=18 Score=21.04 Aligned_cols=13 Identities=31% Similarity=0.813 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHh
Q psy17134 41 GQICLAYRDMCEE 53 (89)
Q Consensus 41 ~~Lc~aY~~~c~~ 53 (89)
++||+.|+.+..+
T Consensus 7 kdlcehyrqiake 19 (48)
T 1ehs_A 7 KDLCEHYRQIAKE 19 (48)
T ss_dssp CSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5789999988765
No 67
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A
Probab=22.32 E-value=1.2e+02 Score=17.32 Aligned_cols=36 Identities=8% Similarity=0.008 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHHHHHHHHHHHh
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEE 53 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~~ 53 (89)
+-+..|++.+|.|-.- .++.+||..+.......|.+
T Consensus 49 ~~~~~l~~~~D~d~dG---~I~~~EF~~~~~~~~~~~~~ 84 (93)
T 1xk4_A 49 KGADVWFKELDINTDG---AVNFQEFLILVIKMGVAAHK 84 (93)
T ss_dssp TCHHHHHHHHCTTCSS---SBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCC---CCcHHHHHHHHHHHHHHHHH
Confidence 4457889999888653 58999999887766666654
No 68
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=21.91 E-value=1e+02 Score=23.16 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=23.9
Q ss_pred HHHHHhcCCCCCcccccccHHHHHHHHHHHHHHHHhCCC
Q psy17134 18 VSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPG 56 (89)
Q Consensus 18 ~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~~~P~ 56 (89)
..+|+.+|+++-. |.++|..+|.++++ .+|+
T Consensus 143 kd~l~~~Gl~~P~-----T~del~~~~~~~k~---~~p~ 173 (502)
T 3vlv_A 143 QDWLDKLHLKTPQ-----TVDELYTVLKAFKE---KDPN 173 (502)
T ss_dssp HHHHHHTTCCCCC-----BHHHHHHHHHHHHH---SCTT
T ss_pred HHHHHHcCCCCCC-----CHHHHHHHHHHHHH---hCCC
Confidence 3688999997532 99999999998775 5664
No 69
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=21.82 E-value=93 Score=24.04 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=33.0
Q ss_pred cCChhhH-HHHHHHHHhcCCCCCcccccccHHHHHHHHHHHHHHHHhCC-Cccc
Q psy17134 8 LFPKRKR-QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMP-GLYE 59 (89)
Q Consensus 8 LFP~~~R-elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~~~P-~L~~ 59 (89)
.||..-= ....-|+..+.-+. .+-|..||..|+..++++| .+..
T Consensus 238 ~~p~~PLLNFl~lLllt~q~~~--------~~lF~~L~~~Y~~~l~rd~~~~~~ 283 (336)
T 3lpz_A 238 IFPSLPLLNFISMLLLSVQKGS--------PDLFRQLKSKYEANLNELNGIWDT 283 (336)
T ss_dssp ECTTCHHHHHHHHHHHHHHSCC--------HHHHHHHHHHTHHHHHTTTTTTHH
T ss_pred cCCCCchHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHhcHHHHHH
Confidence 4664322 67777777777663 4679999999999999999 6654
No 70
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=21.77 E-value=1e+02 Score=20.99 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCCC-cccccccHHHHHHH-------HHHHHHHHHhCC
Q psy17134 15 QLVVSLLERACVKPV-LRPYQLSVQEFGQI-------CLAYRDMCEEMP 55 (89)
Q Consensus 15 elt~~Ll~~AdVDPt-lRp~qLsv~ef~~L-------c~aY~~~c~~~P 55 (89)
..|.+.++..|||.. .|+-|||.+.|..- ...++.++...|
T Consensus 70 ~~a~~~l~~~Gid~s~h~ar~l~~~d~~~~DlIl~Md~~~~~~l~~~~p 118 (173)
T 4etm_A 70 EGTQEILRREGISFDGMLARQVSEQDLDDFDYIIAMDAENIGSLRSMAG 118 (173)
T ss_dssp HHHHHHHHHTTCCCTTCCCCBCCHHHHHHCSEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCccccCCccccCCHhhcCCCCEEEEeCchHHHHHHHHcC
Confidence 678999999999976 69999999998762 345666666655
No 71
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=21.59 E-value=1e+02 Score=23.30 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=23.3
Q ss_pred HHHHhcCCCCCcccccccHHHHHHHHHHHHHHHHhCCC
Q psy17134 19 SLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPG 56 (89)
Q Consensus 19 ~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c~~~P~ 56 (89)
.+|+.+|++|-. |.++|..+|.+.++ ++|+
T Consensus 172 dll~~~Gl~~P~-----Twdel~~~~~~~k~---~~p~ 201 (535)
T 3omb_A 172 AWLDKLGLQVPT-----TWDELENVLKAFKT---QDPN 201 (535)
T ss_dssp HHHHHHTCCCCC-----BHHHHHHHHHHHHH---SCTT
T ss_pred HHHHHcCCCCCC-----CHHHHHHHHHHHHh---hCCC
Confidence 678899998633 99999999988764 5554
No 72
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=21.54 E-value=1e+02 Score=22.04 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=21.1
Q ss_pred HHHHhcCCCCCcccccccHHHHHHHHHHHHH
Q psy17134 19 SLLERACVKPVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 19 ~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
.+|+.+||+|-. |.++|..+|...++
T Consensus 149 dl~~~~G~~~P~-----Twdel~~~~~~l~~ 174 (415)
T 3oo8_A 149 SVFQSKGYEVPA-----SWEAFIALARKMQS 174 (415)
T ss_dssp HHHHHHTCCCCS-----BHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCC-----CHHHHHHHHHHHHH
Confidence 578899997532 99999999998765
No 73
>3q8i_A Odorant binding protein; 2.00A {Anopheles gambiae}
Probab=21.29 E-value=92 Score=19.15 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCcc
Q psy17134 35 LSVQEFGQICLAYRDMCEEMPGLY 58 (89)
Q Consensus 35 Lsv~ef~~Lc~aY~~~c~~~P~L~ 58 (89)
+|++++......|...|.+.-++-
T Consensus 1 ~t~~~~~~~~~~~~~~C~~e~gv~ 24 (124)
T 3q8i_A 1 MTMKQLTNSMDMMRQACAPKFKVE 24 (124)
T ss_dssp -CHHHHHHHHHHHHHHHGGGSCCC
T ss_pred CcHHHHHHHHHHHHHHhccccCCC
Confidence 589999999999999999877653
No 74
>3v2l_A AGAP005208-PA; odorant binding olfaction, general odorant binding protein, transport, secreted, odorant-binding protein; HET: PG4; 1.80A {Anopheles gambiae} PDB: 4f7f_A* 3vb1_A
Probab=21.06 E-value=65 Score=19.51 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCcc
Q psy17134 35 LSVQEFGQICLAYRDMCEEMPGLY 58 (89)
Q Consensus 35 Lsv~ef~~Lc~aY~~~c~~~P~L~ 58 (89)
||++|+.......++.|.+.-++-
T Consensus 1 mT~eq~~~~~~~~~~~C~~e~gv~ 24 (120)
T 3v2l_A 1 MTVEQMMKSGEMIRSVCLGKTKVA 24 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHhhhhhCcC
Confidence 689999999999999998876653
No 75
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=21.04 E-value=67 Score=19.17 Aligned_cols=12 Identities=25% Similarity=0.061 Sum_probs=6.9
Q ss_pred HHHHHhcCCCCC
Q psy17134 18 VSLLERACVKPV 29 (89)
Q Consensus 18 ~~Ll~~AdVDPt 29 (89)
...++.-||+++
T Consensus 11 ~~~y~iLgl~~~ 22 (79)
T 1faf_A 11 ERLLELLKLPRQ 22 (79)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHcCCCCC
Confidence 345566666655
No 76
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=20.91 E-value=1.2e+02 Score=20.20 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=21.6
Q ss_pred cCChhhH-HHHHHHHHhcCCCCCcccccccHHHHHHHHH
Q psy17134 8 LFPKRKR-QLVVSLLERACVKPVLRPYQLSVQEFGQICL 45 (89)
Q Consensus 8 LFP~~~R-elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~ 45 (89)
..|...- ++..-+.+.-..||..|| |++++.+.-.
T Consensus 230 ~~~~~~~~~l~~li~~~l~~~p~~Rp---s~~~l~~~l~ 265 (279)
T 1qpc_A 230 VRPDNCPEELYQLMRLCWKERPEDRP---TFDYLRSVLE 265 (279)
T ss_dssp CCCTTCCHHHHHHHHHHTCSSGGGSC---CHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHhccChhhCC---CHHHHHHHHH
Confidence 3443333 555555666678999998 6666655443
No 77
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=20.90 E-value=1.1e+02 Score=16.40 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHHHHHHHHHH
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMC 51 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c 51 (89)
+-...+++.+|.|-.- .++.++|..++.....+.
T Consensus 38 ~~~~~~~~~~D~~~dg---~i~~~ef~~~~~~~~~~~ 71 (78)
T 1k9u_A 38 DEVQRMMAEIDTDGDG---FIDFNEFISFCNANPGLM 71 (78)
T ss_dssp HHHHHHHHHHCTTCSS---SEEHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhCCCCCC---eEcHHHHHHHHHHCchhH
Confidence 4466788888877644 488889988877665544
No 78
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=20.84 E-value=1.1e+02 Score=21.96 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=22.2
Q ss_pred HHHHhcCCCCCcccccccHHHHHHHHHHHHHH
Q psy17134 19 SLLERACVKPVLRPYQLSVQEFGQICLAYRDM 50 (89)
Q Consensus 19 ~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~ 50 (89)
.+|+.+||+|-. |.++|..+|...+.-
T Consensus 150 dl~~~~Gl~~P~-----Twdel~~~~~~l~~~ 176 (412)
T 3k01_A 150 ELLTKAGVEVPG-----SVAELKTAAAEITEK 176 (412)
T ss_dssp HHHHHHTCCCCS-----BHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCC-----CHHHHHHHHHHHhcc
Confidence 578899996533 999999999998865
No 79
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=20.73 E-value=1.7e+02 Score=20.27 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=36.8
Q ss_pred ChhhH-HHHHHHHHhcCCCC---CcccccccHHHHHHHHHHHHHHHHhCCCccccc
Q psy17134 10 PKRKR-QLVVSLLERACVKP---VLRPYQLSVQEFGQICLAYRDMCEEMPGLYEYT 61 (89)
Q Consensus 10 P~~~R-elt~~Ll~~AdVDP---tlRp~qLsv~ef~~Lc~aY~~~c~~~P~L~~Yd 61 (89)
+.... +.+.++++..++.. ..+|.+||--|-.|++-|=. +-.+|.+-.-|
T Consensus 117 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra--l~~~p~llllD 170 (235)
T 3tif_A 117 SGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA--LANNPPIILAD 170 (235)
T ss_dssp CHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH--HTTCCSEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH--HHcCCCEEEEe
Confidence 33444 77889999999975 45799999999999987743 33567765544
No 80
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A
Probab=20.48 E-value=1.3e+02 Score=17.00 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCCCCcccccccHHHHHHHHHHHHHHH
Q psy17134 15 QLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMC 51 (89)
Q Consensus 15 elt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~~c 51 (89)
+.+..+++.+|.|-.- .++.++|..+.......|
T Consensus 56 ~~~~~l~~~~D~~~dg---~I~~~EF~~~~~~~~~~~ 89 (99)
T 1qls_A 56 GVLDRMMKKLDLDSDG---QLDFQEFLNLIGGLAIAC 89 (99)
T ss_dssp HHHHHHHHHHCTTCSS---SBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCC---cCcHHHHHHHHHHHHHHH
Confidence 5678899999887654 589999987765443333
No 81
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B
Probab=20.24 E-value=53 Score=21.29 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCCC-cccccccHHHHHHH------HHHHHHHHHhCCC
Q psy17134 15 QLVVSLLERACVKPV-LRPYQLSVQEFGQI------CLAYRDMCEEMPG 56 (89)
Q Consensus 15 elt~~Ll~~AdVDPt-lRp~qLsv~ef~~L------c~aY~~~c~~~P~ 56 (89)
..|.+.++..|||.. .||-||+-+.|... |...+++|-..|+
T Consensus 46 p~a~~~l~~~Gid~s~~~sr~l~~~~~~~~D~Ii~m~~~~~~~~p~~~~ 94 (139)
T 1jl3_A 46 PNAVKAMKEVGIDISNQTSDIIDSDILNNADLVVTLCGDAADKCPMTPP 94 (139)
T ss_dssp HHHHHHHHHTTCCCTTCCCCBCCHHHHTTCSEEEECSHHHHHHCCCCCT
T ss_pred HHHHHHHHHcCCCcccCccCcCCHHHhhcCCEEEEeCchHHhhCCCCCC
Confidence 678899999999986 59999999888653 6666667765554
No 82
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=20.02 E-value=96 Score=23.48 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=32.4
Q ss_pred ccccCChhhHHHHHHHHHhcCCCCCcccccccHHHHHHHHHHHHH
Q psy17134 5 AILLFPKRKRQLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRD 49 (89)
Q Consensus 5 ~~~LFP~~~Relt~~Ll~~AdVDPtlRp~qLsv~ef~~Lc~aY~~ 49 (89)
+..++|+ .+...|++.+++ +..+--+||-.+..+|+..-+.
T Consensus 306 l~~~lp~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~ 346 (417)
T 3v76_A 306 LADILPR---RLAQFFADEAKL-TGRMLADLSDKTIDALASSIQV 346 (417)
T ss_dssp HTTTSCH---HHHHHHHHHTTC-TTCBGGGCCHHHHHHHHHHHHS
T ss_pred HHHHhhH---HHHHHHHHhcCC-CCCchhhCCHHHHHHHHHHhcC
Confidence 3445663 477889999999 8888899999999999976443
Done!