RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17134
(89 letters)
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 28.4 bits (63), Expect = 0.28
Identities = 5/41 (12%), Positives = 11/41 (26%), Gaps = 2/41 (4%)
Query: 8 LFPKRKRQLVVSLLERACVKPVLRPYQLSVQEFGQICLAYR 48
L ++ + P L+ EF + +
Sbjct: 293 LGHGGQQYF--NSRITDKDLLKKCPIDLTNDEFIYLTKLFM 331
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus}
PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 27.4 bits (62), Expect = 0.51
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 20 LLERACVKPVLRPYQLSVQEFGQICLAYRDMCE 52
LL+ A + P R QLS+++F ++ D E
Sbjct: 217 LLKEAGINPDARVEQLSLEDFFKLYRLIEDSGE 249
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 26.8 bits (60), Expect = 0.73
Identities = 4/43 (9%), Positives = 16/43 (37%)
Query: 11 KRKRQLVVSLLERACVKPVLRPYQLSVQEFGQICLAYRDMCEE 53
K+ + ++ + ++LSV++ + + +
Sbjct: 249 KKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYRFLQN 291
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 26.9 bits (60), Expect = 0.73
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 24 ACVKPVLRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQEGEGDE 83
AC V+ + EF + L + EE+ GL E + + ++ E DE
Sbjct: 281 ACSPKVIEAFTDLGWEFVKKALEHPLYLEEISGLSVIKQEVE--RLGNDVFEWEDDESDE 338
Query: 84 I 84
I
Sbjct: 339 I 339
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 26.7 bits (60), Expect = 1.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 13 KRQLVVSLLERACVKPVLRPYQLSVQEFGQI 43
K+ + S + P LRP +L+V++F +I
Sbjct: 220 KKLINPSQWPLLEINPQLRPQELTVEDFVKI 250
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli} SCOP:
c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 26.3 bits (59), Expect = 1.2
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 13 KRQLVVSLLERACVKPVLRPYQLSVQEFGQI 43
V +L + P +R +SV ++ Q+
Sbjct: 214 GNLFSVEVLTGMGIDPAMRAENISVAQYCQM 244
>3fut_A Dimethyladenosine transferase; methyltransferase,
dimethyltransferase, dual-specific methyltransferase,
16S rRNA methyltransferase; 1.52A {Thermus thermophilus}
PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Length = 271
Score = 25.9 bits (58), Expect = 1.7
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 3 LWAILLFPKRKRQLVVSLLERACVKPVLRPYQLSVQEFGQI 43
L L + V L + P +R +L ++ F ++
Sbjct: 223 LLNALAAAGYPKARVEEALRALGLPPRVRAEELDLEAFRRL 263
>3hf5_A 4-methylmuconolactone methylisomerase; ferredoxin,
ferredoxin-like fold, beta-barrel, biodegradation,
ortho- cleavage; HET: 3ML; 1.40A {Pseudomonas reinekei}
PDB: 3hds_A* 3hfk_A* 2ifx_A*
Length = 116
Score = 25.5 bits (55), Expect = 1.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 31 RPYQLSVQEFGQICLAYRDMCEEMPGLYEY 60
+P +S ++F + C+ + M MPGL++Y
Sbjct: 19 KPESMSHEQFRKECVVHFQMSAGMPGLHKY 48
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 25.6 bits (57), Expect = 2.4
Identities = 3/31 (9%), Positives = 9/31 (29%)
Query: 13 KRQLVVSLLERACVKPVLRPYQLSVQEFGQI 43
+ + R + V E+ ++
Sbjct: 238 GGYRDLVDFDALGFDLARRAEDIGVDEYVRV 268
>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for
structural genomics, JCSG, protein structure initiative
hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP:
d.283.1.1
Length = 451
Score = 25.3 bits (56), Expect = 3.1
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 52 EEMPGLYEYTLEDTPGDIEPEAVAEQEGE 80
E P Y Y D+ + + ++ E
Sbjct: 203 EARPSAYWYESSLYMNDLIKKGIGQKALE 231
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 23.9 bits (52), Expect = 10.0
Identities = 7/47 (14%), Positives = 13/47 (27%)
Query: 31 RPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQ 77
R Y + + C AY D + L + + +
Sbjct: 175 RDYYECTGIYKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNK 221
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.141 0.428
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,399,183
Number of extensions: 70332
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 16
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)