RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17134
         (89 letters)



>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein
           KsgA {Escherichia coli [TaxId: 562]}
          Length = 252

 Score = 31.0 bits (69), Expect = 0.011
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 4   WAILLFPKRKRQLVVSL--------LERACVKPVLRPYQLSVQEFGQICLAYRD 49
                F +R++ +  SL        L    + P +R   +SV ++ Q+     +
Sbjct: 197 ITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAE 250


>d2ifxa1 d.58.4.19 (A:1-108) Hypothetical protein Reut_A1503
          {Ralstonia eutropha [TaxId: 106590]}
          Length = 108

 Score = 27.7 bits (61), Expect = 0.10
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 29 VLRPYQLSVQEFGQICLAYRDMCEEMPGLYEY 60
          +++P  +S + F   CL + +M  ++PGL++Y
Sbjct: 8  LVKPAGMSDETFRAECLRHYEMSHDVPGLHKY 39


>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 322

 Score = 25.0 bits (54), Expect = 1.5
 Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 8   LFPKRKRQLVVSLLERACVKPVLRPYQLSVQEFGQICLAY 47
           L    ++     + ++  +K    P  L+  EF  +   +
Sbjct: 278 LGHGGQQYFNSRITDKDLLK--KCPIDLTNDEFIYLTKLF 315


>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex,
           C-terminal domain {Thermus aquaticus [TaxId: 271]}
          Length = 126

 Score = 23.6 bits (51), Expect = 3.8
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 1   MPLWAILLFPKRKRQLVVSLLERACVKPVLR--PYQLSVQEFGQI 43
               A+L  P+   Q    LL  A +K +L   P  L V +   +
Sbjct: 63  RIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEVPKEVAV 107


>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 333

 Score = 22.7 bits (48), Expect = 8.1
 Identities = 3/17 (17%), Positives = 3/17 (17%)

Query: 4  WAILLFPKRKRQLVVSL 20
            I       R  V   
Sbjct: 19 AVIQALDGEMRNAVCIF 35


>d1zk8a2 a.121.1.1 (A:78-182) Transcriptional regulator BC5000
          {Bacillus cereus [TaxId: 1396]}
          Length = 105

 Score = 22.3 bits (47), Expect = 9.9
 Identities = 8/28 (28%), Positives = 11/28 (39%)

Query: 43 ICLAYRDMCEEMPGLYEYTLEDTPGDIE 70
          +  AY     + PGLYE T        +
Sbjct: 10 LGEAYVAFVRKHPGLYEATFLRDEEVRK 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 340,162
Number of extensions: 13956
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 12
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)