BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17135
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 41 SNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADG 100
SN F D S+RLWNL N C + H K +L VAF P I S G D
Sbjct: 76 SNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKD----VLSVAFSPDNRQIVSGGRDN 131
Query: 101 LAKVF 105
+V+
Sbjct: 132 ALRVW 136
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +I++W+ K+CV + H ++ FHP+ P I S DG K++
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAV----FHPTLPIIISGSEDGTLKIW 255
Score = 30.0 bits (66), Expect = 0.34, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D IR++N + V + AH + I +A HP+KP++ S D K++
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAH----PDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 38.5 bits (88), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +I++W+ K+CV + H ++ FHP+ P I S DG K++
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAV----FHPTLPIIISGSEDGTLKIW 255
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D IR++N + V + AH + I +A HP+KP++ S D K++
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAH----PDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +I++W+ K+CV + H ++ FHP+ P I S DG K++
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAV----FHPTLPIIISGSEDGTLKIW 255
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D IR++N + V + AH + I +A HP+KP++ S D K++
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAH----PDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +I++W+ K+CV + H ++ FHP+ P I S DG K++
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAV----FHPTLPIIISGSEDGTLKIW 255
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D IR++N + V + AH + I +A HP+KP++ S D K++
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAH----PDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 29 NSEPPACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHP 88
+SE C +S+ L + DC ++LW+L+ K C + H S+ F P
Sbjct: 704 HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTN----SVNHCRFSP 759
Query: 89 SKPFIASAGADGLAKVF 105
+AS ADG K++
Sbjct: 760 DDKLLASCSADGTLKLW 776
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D ++R+W+ NK C++ + AH + + + FH + P++ + D KV+
Sbjct: 359 DKTLRVWDYKNKRCMKTLNAH----EHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 28.5 bits (62), Expect = 0.96, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +I+LW+ C++ + H D ++ V+ P+ I SA D K++
Sbjct: 171 DMTIKLWDFQGFECIRTMHGH----DHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVFV 106
D +I++W + CV+ T HR E + V + IAS D +V+V
Sbjct: 213 DKTIKMWEVQTGYCVKTFTGHR----EWVRMVRPNQDGTLIASCSNDQTVRVWV 262
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 40 SSNISLFDSRP--------GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKP 91
+SNI+ + P G D I LWNL K + ++A + + +AF P++
Sbjct: 190 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-----DEVFSLAFSPNRY 244
Query: 92 FIASAGADGLAKVF 105
++A+A A G+ KVF
Sbjct: 245 WLAAATATGI-KVF 257
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 40 SSNISLFDSRP--------GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKP 91
+SNI+ + P G D I LWNL K + ++A + + +AF P++
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-----DEVFSLAFSPNRY 250
Query: 92 FIASAGADGLAKVF 105
++A+A A G+ KVF
Sbjct: 251 WLAAATATGI-KVF 263
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 40 SSNISLFDSRP--------GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKP 91
+SNI+ + P G D I LWNL K + ++A + + +AF P++
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-----DEVFSLAFSPNRY 250
Query: 92 FIASAGADGLAKVF 105
++A+A A G+ KVF
Sbjct: 251 WLAAATATGI-KVF 263
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 40 SSNISLFDSRP--------GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKP 91
+SNI+ + P G D I LWNL K + ++A + + +AF P++
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-----DEVFSLAFSPNRY 250
Query: 92 FIASAGADGLAKVF 105
++A+A A G+ KVF
Sbjct: 251 WLAAATATGI-KVF 263
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 14/74 (18%)
Query: 40 SSNISLFDSRP--------GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKP 91
+SNI+ + P G D I LWNL K + ++A + + +AF P++
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-----DEVFSLAFSPNRY 250
Query: 92 FIASAGADGLAKVF 105
++A+A A G+ KVF
Sbjct: 251 WLAAATATGI-KVF 263
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 33.9 bits (76), Expect = 0.026, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 14/74 (18%)
Query: 40 SSNISLFDSRP--------GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKP 91
+SNI+ + P G D I LWNL K ++A + + +AF P++
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ-----DEVFSLAFSPNRY 250
Query: 92 FIASAGADGLAKVF 105
++A+A A G+ KVF
Sbjct: 251 WLAAATATGI-KVF 263
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 8 VIYIWTLLELQTYARNDCPE--LNSEPPACQTIPSSNISLFDSRPGHDCSIRLWNLDNKT 65
+ IW L E + P L + S + F D ++RLW+L T
Sbjct: 50 TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT 109
Query: 66 CVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
+ H+ + + VAF P I SAGA+ K++
Sbjct: 110 TYKRFVGHQSE----VYSVAFSPDNRQILSAGAEREIKLW 145
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 32.7 bits (73), Expect = 0.059, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 33 PACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPF 92
P QTI S++ D +++LWN N +Q +T H S+ VAF P
Sbjct: 518 PDGQTIASAS---------DDKTVKLWN-RNGQLLQTLTGH----SSSVWGVAFSPDGQT 563
Query: 93 IASAGADGLAKVF 105
IASA +D K++
Sbjct: 564 IASASSDKTVKLW 576
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 33 PACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPF 92
P QTI S++ D +++LWN N +Q +T H S+ VAF P
Sbjct: 395 PDGQTIASAS---------DDKTVKLWN-RNGQLLQTLTGH----SSSVWGVAFSPDDQT 440
Query: 93 IASAGADGLAKVF 105
IASA D K++
Sbjct: 441 IASASDDKTVKLW 453
Score = 31.2 bits (69), Expect = 0.13, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 33 PACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPF 92
P QTI S++ D +++LWN N +Q +T H S+ VAF P
Sbjct: 26 PDGQTIASAS---------DDKTVKLWN-RNGQLLQTLTGH----SSSVWGVAFSPDGQT 71
Query: 93 IASAGADGLAKVF 105
IASA D K++
Sbjct: 72 IASASDDKTVKLW 84
Score = 31.2 bits (69), Expect = 0.13, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 33 PACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPF 92
P QTI S++ D +++LWN N +Q +T H S+ VAF P
Sbjct: 108 PDGQTIASAS---------DDKTVKLWN-RNGQLLQTLTGH----SSSVWGVAFSPDGQT 153
Query: 93 IASAGADGLAKVF 105
IASA D K++
Sbjct: 154 IASASDDKTVKLW 166
Score = 31.2 bits (69), Expect = 0.13, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 33 PACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPF 92
P QTI S++ D +++LWN N +Q +T H S+ VAF P
Sbjct: 149 PDGQTIASAS---------DDKTVKLWN-RNGQLLQTLTGH----SSSVWGVAFSPDGQT 194
Query: 93 IASAGADGLAKVF 105
IASA D K++
Sbjct: 195 IASASDDKTVKLW 207
Score = 31.2 bits (69), Expect = 0.13, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 33 PACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPF 92
P QTI S++ D +++LWN N +Q +T H S+ VAF P
Sbjct: 272 PDGQTIASAS---------DDKTVKLWN-RNGQLLQTLTGH----SSSVWGVAFSPDGQT 317
Query: 93 IASAGADGLAKVF 105
IASA D K++
Sbjct: 318 IASASDDKTVKLW 330
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 33 PACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPF 92
P QTI S++ D +++LWN N +Q +T H S+ VAF P
Sbjct: 67 PDGQTIASAS---------DDKTVKLWN-RNGQLLQTLTGH----SSSVRGVAFSPDGQT 112
Query: 93 IASAGADGLAKVF 105
IASA D K++
Sbjct: 113 IASASDDKTVKLW 125
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 33 PACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPF 92
P QTI S++ D +++LWN N +Q +T H S+ VAF P
Sbjct: 190 PDGQTIASAS---------DDKTVKLWN-RNGQLLQTLTGH----SSSVRGVAFSPDGQT 235
Query: 93 IASAGADGLAKVF 105
IASA D K++
Sbjct: 236 IASASDDKTVKLW 248
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 33 PACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPF 92
P QTI S++ D +++LWN N +Q +T H S+ VAF P
Sbjct: 354 PDGQTIASAS---------DDKTVKLWN-RNGQLLQTLTGH----SSSVRGVAFSPDGQT 399
Query: 93 IASAGADGLAKVF 105
IASA D K++
Sbjct: 400 IASASDDKTVKLW 412
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 33 PACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPF 92
P QTI S++ D +++LWN N +Q +T H S+ VAF P
Sbjct: 477 PDGQTIASAS---------DDKTVKLWN-RNGQLLQTLTGH----SSSVRGVAFSPDGQT 522
Query: 93 IASAGADGLAKVF 105
IASA D K++
Sbjct: 523 IASASDDKTVKLW 535
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 33 PACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPF 92
P QTI S++ D +++LWN N +Q +T H S+ VAF P
Sbjct: 231 PDGQTIASAS---------DDKTVKLWN-RNGQLLQTLTGH----SSSVNGVAFRPDGQT 276
Query: 93 IASAGADGLAKVF 105
IASA D K++
Sbjct: 277 IASASDDKTVKLW 289
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 33 PACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPF 92
P QTI S++ D +++LWN N +Q +T H S+ VAF P
Sbjct: 436 PDDQTIASAS---------DDKTVKLWN-RNGQLLQTLTGH----SSSVRGVAFSPDGQT 481
Query: 93 IASAGADGLAKVF 105
IASA D K++
Sbjct: 482 IASASDDKTVKLW 494
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 33 PACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPF 92
P QTI S++ D +++LWN N +Q +T H S+ VAF P
Sbjct: 313 PDGQTIASAS---------DDKTVKLWN-RNGQHLQTLTGH----SSSVWGVAFSPDGQT 358
Query: 93 IASAGADGLAKVF 105
IASA D K++
Sbjct: 359 IASASDDKTVKLW 371
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 279 QGHT----DVVISTACHPTENIIASA 300
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 116 CNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIV 168
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 169 SSSYDGLCRIW 179
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 279 QGHT----DVVISTACHPTENIIASA 300
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 116 CNFNPQSNLIVSGS---FDESVRIWDVKTGMCLKTLPAHS----DPVSAVHFNRDGSLIV 168
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 169 SSSYDGLCRIW 179
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 279 QGHT----DVVISTACHPTENIIASA 300
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 116 CNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIV 168
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 169 SSSYDGLCRIW 179
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 279 QGHT----DVVISTACHPTENIIASA 300
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 116 CNFNPQSNLIVSGS---FDESVRIWDVKTGMCLKTLPAHS----DPVSAVHFNRDGSLIV 168
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 169 SSSYDGLCRIW 179
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 29 NSEPPACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHP 88
+SE C + + L + +D ++LW+L+ K C + H S+ F P
Sbjct: 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN----SVNHCRFSP 753
Query: 89 SKPFIASAGADGLAKVF 105
+AS ADG +++
Sbjct: 754 DDELLASCSADGTLRLW 770
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 279 QGHT----DVVISTACHPTENIIASA 300
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 116 CNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIV 168
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 169 SSSYDGLCRIW 179
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 29 NSEPPACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHP 88
+SE C + + L + +D ++LW+L+ K C + H S+ F P
Sbjct: 705 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN----SVNHCRFSP 760
Query: 89 SKPFIASAGADGLAKVF 105
+AS ADG +++
Sbjct: 761 DDELLASCSADGTLRLW 777
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 221 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 280
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 281 QGHT----DVVISTACHPTENIIASA 302
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 118 CNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIV 170
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 171 SSSYDGLCRIW 181
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 215 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 274
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 275 QGHT----DVVISTACHPTENIIASA 296
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 112 CNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIV 164
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 165 SSSYDGLCRIW 175
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 137 CNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIV 189
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 190 SSSYDGLCRIW 200
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 240 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 299
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 300 QGHT----DVVISTACHPTENIIASA 321
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 282 QGHT----DVVISTACHPTENIIASA 303
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 119 CNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIV 171
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 172 SSSYDGLCRIW 182
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 233 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 292
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 293 QGHT----DVVISTACHPTENIIASA 314
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 130 CNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIV 182
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 183 SSSYDGLCRIW 193
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 276 QGHT----DVVISTACHPTENIIASA 297
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 113 CNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIV 165
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 166 SSSYDGLCRIW 176
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 119 CNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIV 171
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 172 SSSYDGLCRIW 182
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 282 QGHT----DVVISTACHPTENIIASA 303
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 135 CNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIV 187
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 188 SSSYDGLCRIW 198
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 238 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 297
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 298 QGHT----DVVISTACHPTENIIASA 319
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 276 QGHT----DVVISTACHPTENIIASA 297
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 113 CNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIV 165
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 166 SSSYDGLCRIW 176
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 212 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 271
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 272 QGHT----DVVISTACHPTENIIASA 293
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 109 CNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIV 161
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 162 SSSYDGLCRIW 172
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 217 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 276
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 277 QGHT----DVVISTACHPTENIIASA 298
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 114 CNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIV 166
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 167 SSSYDGLCRIW 177
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
C P SN+ + S D S+R+W++ C++ + AH + + V F+ I
Sbjct: 119 CNFNPQSNLIVSGS---FDESVRIWDVKTGKCLKTLPAHS----DPVSAVHFNRDGSLIV 171
Query: 95 SAGADGLAKVF 105
S+ DGL +++
Sbjct: 172 SSSYDGLCRIW 182
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 15 LELQTYARNDCPELNSEPPACQTIPSSNISLFDSR----PGHDCSIRLWNLDNKTCVQEI 70
L+L Y++ C + + + +N S+ + D + +WNL K VQ++
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Query: 71 TAHRKKFDESILDVAFHPSKPFIASA 96
H + ++ A HP++ IASA
Sbjct: 282 QGHT----DVVISTACHPTENIIASA 303
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 39 PSSNISLFDSRPGHDCSIRLWNLDNK---TCVQEITAHRKKFDESILDVAFHPSKPFIAS 95
PS N+ SR D S+ +W +D + CV + +H + + V +HPS+ +AS
Sbjct: 115 PSGNLLATCSR---DKSVWVWEVDEEDEYECVSVLNSHT----QDVKHVVWHPSQELLAS 167
Query: 96 AGADGLAKVF 105
A D K++
Sbjct: 168 ASYDDTVKLY 177
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D ++RLW+L T + H K +L VAF I S D K++
Sbjct: 84 DGTLRLWDLTTGTTTRRFVGHTK----DVLSVAFSSDNRQIVSGSRDKTIKLW 132
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADG 100
D +IR+W+L+N + + H + L S F+ SA ADG
Sbjct: 331 DTTIRIWDLENGELMYTLQGH------TALVGLLRLSDKFLVSAAADG 372
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 28.9 bits (63), Expect = 0.85, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D SIR+W+++ C+ +T H+ L + S AD K++
Sbjct: 298 DTSIRVWDVETGNCIHTLTGHQS------LTSGMELKDNILVSGNADSTVKIW 344
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D S +LW++ C Q T H + I + F P+ A+ D ++F
Sbjct: 216 DASAKLWDVREGMCRQTFTGH----ESDINAICFFPNGNAFATGSDDATCRLF 264
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D S +LW++ C Q T H + I + F P+ A+ D ++F
Sbjct: 205 DASAKLWDVREGMCRQTFTGH----ESDINAICFFPNGNAFATGSDDATCRLF 253
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D S +LW++ C Q T H + I + F P+ A+ D ++F
Sbjct: 205 DASAKLWDVREGMCRQTFTGH----ESDINAICFFPNGNAFATGSDDATCRLF 253
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D S +LW++ C Q T H + I + F P+ A+ D ++F
Sbjct: 205 DASAKLWDVREGMCRQTFTGH----ESDINAICFFPNGNAFATGSDDATCRLF 253
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D S +LW++ C Q T H + I + F P+ A+ D ++F
Sbjct: 205 DASAKLWDVREGMCRQTFTGH----ESDINAICFFPNGNAFATGSDDATCRLF 253
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 27 ELNSEPPACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAH 73
EL S PAC + S S D +I +W+L N+T V++ H
Sbjct: 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D ++RLW+L T + H K +L VAF I S D K++
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTK----DVLSVAFSSDNRQIVSGSRDKTIKLW 155
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDV 84
G D +IR+W++ CVQ+ T +++ + V
Sbjct: 271 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDV 84
G D +IR+W++ CVQ+ T +++ + V
Sbjct: 271 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D IRLW+L+N ++ I A D L AF P ++A+ G +F
Sbjct: 101 DAHIRLWDLENGKQIKSIDA--GPVDAWTL--AFSPDSQYLATGTHVGKVNIF 149
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 46 FDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
F + D IR+W+++N+ V + H ++ I + + PS + S D +++
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGH----EQDIYSLDYFPSGDKLVSGSGDRTVRIW 192
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 30/65 (46%)
Query: 41 SNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADG 100
SN + + D S+ +W D E + ++ + + V +HPS+ +AS+ D
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 101 LAKVF 105
+++
Sbjct: 176 TVRIW 180
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADG 100
D +IR+W+L+N + H + L S F+ SA ADG
Sbjct: 331 DTTIRIWDLENGELXYTLQGH------TALVGLLRLSDKFLVSAAADG 372
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 6 SSVIYIWTLLELQTYARNDCPELNSEPPACQTIPSSNISLFDSRPGHDCSIRLWNLDNKT 65
S + +W +LE ++ N + + +T+ + G D S+++W+L K
Sbjct: 114 SGAVELWEILEKESLLVNKFAKYEHDD-IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA 172
Query: 66 CVQEITAHRKKFDESILDVAFHPSKPFI-ASAGADG 100
++ AH + + VA P K I S G DG
Sbjct: 173 VLKSYNAHSSEVNC----VAACPGKDTIFLSCGEDG 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,241,403
Number of Sequences: 62578
Number of extensions: 112517
Number of successful extensions: 297
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 114
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)