BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17135
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5D7H2|STRN3_BOVIN Striatin-3 OS=Bos taurus GN=STRN3 PE=2 SV=1
Length = 797
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/55 (89%), Positives = 51/55 (92%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVFV 106
HDCSIRLWNLD+KTCVQEITAHRKK DESI DVAFHPSK +IASAGAD LAKVFV
Sbjct: 743 HDCSIRLWNLDSKTCVQEITAHRKKLDESIYDVAFHPSKAYIASAGADALAKVFV 797
>sp|P58405|STRN3_RAT Striatin-3 OS=Rattus norvegicus GN=Strn3 PE=2 SV=2
Length = 794
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/55 (89%), Positives = 51/55 (92%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVFV 106
HDCSIRLWNLD+KTCVQEITAHRKK DESI DVAFHPSK +IASAGAD LAKVFV
Sbjct: 740 HDCSIRLWNLDSKTCVQEITAHRKKLDESIYDVAFHPSKAYIASAGADALAKVFV 794
>sp|Q9ERG2|STRN3_MOUSE Striatin-3 OS=Mus musculus GN=Strn3 PE=1 SV=1
Length = 796
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/55 (89%), Positives = 51/55 (92%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVFV 106
HDCSIRLWNLD+KTCVQEITAHRKK DESI DVAFHPSK +IASAGAD LAKVFV
Sbjct: 742 HDCSIRLWNLDSKTCVQEITAHRKKLDESIYDVAFHPSKAYIASAGADALAKVFV 796
>sp|Q13033|STRN3_HUMAN Striatin-3 OS=Homo sapiens GN=STRN3 PE=1 SV=3
Length = 797
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/55 (87%), Positives = 50/55 (90%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVFV 106
HDCSIRLWNLD+KTCVQEITAHRKK DESI DVAFH SK +IASAGAD LAKVFV
Sbjct: 743 HDCSIRLWNLDSKTCVQEITAHRKKLDESIYDVAFHSSKAYIASAGADALAKVFV 797
>sp|P70483|STRN_RAT Striatin OS=Rattus norvegicus GN=Strn PE=1 SV=1
Length = 780
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/55 (83%), Positives = 51/55 (92%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVFV 106
HDCSIRLWNL++KTC+QE TAHRKKF+ESI DVAFHPSK +IASAGAD LAKVFV
Sbjct: 726 HDCSIRLWNLESKTCIQEFTAHRKKFEESIHDVAFHPSKCYIASAGADALAKVFV 780
>sp|O55106|STRN_MOUSE Striatin OS=Mus musculus GN=Strn PE=1 SV=2
Length = 780
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/55 (83%), Positives = 51/55 (92%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVFV 106
HDCSIRLWNL++KTC+QE TAHRKKF+ESI DVAFHPSK +IASAGAD LAKVFV
Sbjct: 726 HDCSIRLWNLESKTCIQEFTAHRKKFEESIHDVAFHPSKCYIASAGADALAKVFV 780
>sp|O43815|STRN_HUMAN Striatin OS=Homo sapiens GN=STRN PE=1 SV=4
Length = 780
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/55 (83%), Positives = 51/55 (92%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVFV 106
HDCSIRLWNL++KTC+QE TAHRKKF+ESI DVAFHPSK +IASAGAD LAKVFV
Sbjct: 726 HDCSIRLWNLESKTCIQEFTAHRKKFEESIHDVAFHPSKCYIASAGADALAKVFV 780
>sp|P58404|STRN4_MOUSE Striatin-4 OS=Mus musculus GN=Strn4 PE=1 SV=2
Length = 760
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/55 (80%), Positives = 48/55 (87%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVFV 106
HDCS+RLW+LDNKTCVQEITAHRKK +E+I VA HPSK IASAGAD LAKVFV
Sbjct: 706 HDCSLRLWSLDNKTCVQEITAHRKKHEEAIHAVACHPSKALIASAGADALAKVFV 760
>sp|Q9NRL3|STRN4_HUMAN Striatin-4 OS=Homo sapiens GN=STRN4 PE=1 SV=2
Length = 753
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/55 (80%), Positives = 48/55 (87%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVFV 106
HDCS+RLW+LDNKTCVQEITAHRKK +E+I VA HPSK IASAGAD LAKVFV
Sbjct: 699 HDCSLRLWSLDNKTCVQEITAHRKKHEEAIHAVACHPSKALIASAGADALAKVFV 753
>sp|Q54J37|STRN_DICDI Striatin homolog OS=Dictyostelium discoideum GN=strn PE=3 SV=1
Length = 827
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
HD SIR W++ +KTC+Q++ +HR K+DESI + +HP+K + AS GAD + ++
Sbjct: 772 AHDSSIRFWDISSKTCIQDLNSHRPKYDESIHCIKYHPNKGYFASGGADSVIRIL 826
>sp|Q70M86|STRN_SORMK Striatin Pro11 OS=Sordaria macrospora (strain ATCC MYA-333 / DSM
997 / K(L3346) / K-hell) GN=pro11 PE=3 SV=1
Length = 845
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
GHD S+R W+L+ ++C QE+T HR E + V + ++ S+G DG+ KV+
Sbjct: 789 GHDMSLRFWSLETRSCTQEMTCHRSMRGEGVCAVVWSQDGRWVVSSGGDGMVKVY 843
>sp|Q5FWQ6|WDR69_XENLA Outer row dynein assembly protein 16 homolog OS=Xenopus laevis
GN=wdr69 PE=2 SV=1
Length = 415
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D S +LW+ N CV +T H D+ +LDV F + +A+A ADG A+V+
Sbjct: 282 DKSCKLWDSLNGKCVATLTGH----DDEVLDVTFDSTGQLVATASADGTARVY 330
>sp|Q8N136|WDR69_HUMAN Outer row dynein assembly protein 16 homolog OS=Homo sapiens
GN=WDR69 PE=1 SV=1
Length = 415
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D + +LW+ N CV +T H D+ ILD F + IA+A ADG A++F
Sbjct: 282 DKTCKLWDATNGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARIF 330
>sp|Q6P2Y2|WDR69_XENTR Outer row dynein assembly protein 16 homolog OS=Xenopus tropicalis
GN=wdr69 PE=2 SV=1
Length = 415
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D S +LW+ N CV +T H ++ +LDV F + +A+A ADG A+V+
Sbjct: 282 DKSCKLWDSLNGKCVATLTGH----EDEVLDVTFDSTGQLVATASADGTARVY 330
>sp|Q0P593|WDR69_BOVIN Outer row dynein assembly protein 16 homolog OS=Bos taurus GN=WDR69
PE=2 SV=1
Length = 415
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D + +LW+ N CV +T H D+ ILD F + IA+A ADG A++F
Sbjct: 282 DKTCKLWDAVNGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARIF 330
>sp|Q562C2|BOP1_RAT Ribosome biogenesis protein BOP1 OS=Rattus norvegicus GN=Bop1 PE=2
SV=1
Length = 731
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 67 VQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
V+ + H D +LDVAFHP++P++ S+GADG ++F
Sbjct: 692 VKVLKGHSLTRDLGVLDVAFHPTQPWVFSSGADGTIRLF 730
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADG 100
+D + ++LD T ++ H KK ++ VAFHP P AS DG
Sbjct: 625 YDSKLVWFDLDLSTKPYKVLRHHKK---ALRAVAFHPRYPLFASGSDDG 670
>sp|Q4R8E7|WDR69_MACFA Outer row dynein assembly protein 16 homolog OS=Macaca fascicularis
GN=WDR69 PE=2 SV=1
Length = 415
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D + LW+ N CV +T H D+ ILD F + IA+A ADG A++F
Sbjct: 282 DKTCMLWDATNGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARIF 330
>sp|P97452|BOP1_MOUSE Ribosome biogenesis protein BOP1 OS=Mus musculus GN=Bop1 PE=1 SV=1
Length = 732
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 67 VQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
V+ + H D +LDVAFHP++P++ S+GADG ++F
Sbjct: 693 VKVLKGHTLTRDLGVLDVAFHPTQPWVFSSGADGTIRLF 731
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADG 100
+D + ++LD T ++ H KK ++ VAFHP P AS DG
Sbjct: 626 YDSKLVWFDLDLSTKPYKVLRHHKK---ALRAVAFHPRYPLFASGSDDG 671
>sp|Q9USN3|UTP13_SCHPO Probable U3 small nucleolar RNA-associated protein 13
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=utp13 PE=3 SV=3
Length = 777
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +IR+WN+D + CVQ + H +IL + + + SA ADGL KV+
Sbjct: 528 DRTIRIWNVDTQQCVQTLEGHTG----AILKLIYISQGTQVVSAAADGLVKVW 576
>sp|O62621|COPB2_DROME Coatomer subunit beta' OS=Drosophila melanogaster GN=beta'Cop PE=2
SV=2
Length = 914
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +++W+ NKTCVQ + H ++I V FHP P + + DG +++
Sbjct: 208 DRLVKIWDYQNKTCVQTLEGHA----QNISAVCFHPELPIVLTGSEDGTVRIW 256
>sp|P62884|GBLP_LEIIN Guanine nucleotide-binding protein subunit beta-like protein
OS=Leishmania infantum GN=LinJ28.2880 PE=2 SV=1
Length = 312
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D SIR+W+L N C ++ H K +L VAF P I SAG D + +V+
Sbjct: 86 DRSIRMWDLRNGQCQRKFLKHTKD----VLAVAFSPDDRLIVSAGRDNVIRVW 134
>sp|P62883|GBLP_LEICH Guanine nucleotide-binding protein subunit beta-like protein
OS=Leishmania chagasi PE=2 SV=1
Length = 312
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D SIR+W+L N C ++ H K +L VAF P I SAG D + +V+
Sbjct: 86 DRSIRMWDLRNGQCQRKFLKHTKD----VLAVAFSPDDRLIVSAGRDNVIRVW 134
>sp|Q25306|GBLP_LEIMA Guanine nucleotide-binding protein subunit beta-like protein
OS=Leishmania major PE=2 SV=1
Length = 312
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D SIR+W+L N C ++ H K +L VAF P I SAG D + +V+
Sbjct: 86 DRSIRMWDLRNGQCQRKFLKHTKD----VLAVAFSPDDRLIVSAGRDNVIRVW 134
>sp|P69104|GBLP_TRYBR Guanine nucleotide-binding protein subunit beta-like protein
OS=Trypanosoma brucei rhodesiense PE=2 SV=1
Length = 318
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 41 SNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADG 100
SN F D S+RLWNL N C + H K +L VAF P I S G D
Sbjct: 76 SNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKD----VLSVAFSPDNRQIVSGGRDN 131
Query: 101 LAKVF 105
+V+
Sbjct: 132 ALRVW 136
>sp|P69103|GBLP_TRYBB Guanine nucleotide-binding protein subunit beta-like protein
OS=Trypanosoma brucei brucei PE=2 SV=1
Length = 318
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 41 SNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADG 100
SN F D S+RLWNL N C + H K +L VAF P I S G D
Sbjct: 76 SNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKD----VLSVAFSPDNRQIVSGGRDN 131
Query: 101 LAKVF 105
+V+
Sbjct: 132 ALRVW 136
>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1
Length = 1258
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
G D +++LW++ + C++ +T H + + VAFHP +ASA D K++
Sbjct: 703 GADENVKLWSVRDGVCIKTLTGH----EHEVFSVAFHPDGETLASASGDKTIKLW 753
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
DC+++LWN+ C++ ++ H K IL +A+ P +ASA AD +++
Sbjct: 1041 DCTVKLWNISTGQCLKTLSEHSDK----ILGMAWSPDGQLLASASADQSVRLW 1089
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D S+RLWN+ C Q + H + + V FHP IA+ AD K++
Sbjct: 999 DSSVRLWNISTGQCFQILLEH----TDWVYAVVFHPQGKIIATGSADCTVKLW 1047
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +I+LW++ + TC+Q +T H + + VAF P +AS+ AD K++
Sbjct: 747 DKTIKLWDIQDGTCLQTLTGH----TDWVRCVAFSPDGNTLASSAADHTIKLW 795
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D ++++W+ C++ +T H + D+AF P +ASA D +++
Sbjct: 1125 DQTVKIWDWQQGKCLKTLTGHTNW----VFDIAFSPDGKILASASHDQTVRIW 1173
>sp|Q7ZXX9|BOP1B_XENLA Ribosome biogenesis protein bop1-B OS=Xenopus laevis GN=bop1-b PE=2
SV=1
Length = 728
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 67 VQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVFV 106
V+ + H D +LDV FHP++P++ S+GADG ++F
Sbjct: 689 VKVLRGHAIHRDLGVLDVMFHPTQPWVFSSGADGTIRLFT 728
>sp|Q5BK30|WDR69_RAT Outer row dynein assembly protein 16 homolog OS=Rattus norvegicus
GN=Wdr69 PE=2 SV=1
Length = 415
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D + LW+ + CV +T H D+ ILD F + IA+A ADG A+V+
Sbjct: 282 DKTCMLWDATSGKCVATLTGH----DDEILDSCFDYTGKLIATASADGTARVY 330
>sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1
SV=2
Length = 1216
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +IR+WN ++TCV +T H + ++ +FHP + + SA D +V+
Sbjct: 114 DQTIRIWNWQSRTCVSVLTGH----NHYVMCASFHPKEDLVVSASLDQTVRVW 162
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 39 PSSNISLFDSRP-----GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFI 93
P + +S+P G D I++WN N C+ + H + I V FH P+I
Sbjct: 53 PVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHL----DYIRTVQFHHEYPWI 108
Query: 94 ASAGADGLAKVF 105
SA D +++
Sbjct: 109 VSASDDQTIRIW 120
>sp|O55029|COPB2_MOUSE Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2
Length = 905
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +++W+ NKTCVQ + H +++ +FHP P I + DG +++
Sbjct: 208 DRLVKIWDYQNKTCVQTLEGHA----QNVSCASFHPELPIIITGSEDGTVRIW 256
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D IR++N + V AH + I +A HP++PFI ++ D L K++
Sbjct: 78 DMQIRVFNYNTLERVHMFEAH----SDYIRCIAVHPTQPFILTSSDDMLIKLW 126
>sp|P35605|COPB2_BOVIN Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3
Length = 906
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +++W+ NKTCVQ + H +++ +FHP P I + DG +++
Sbjct: 208 DRLVKIWDYQNKTCVQTLEGHA----QNVSCASFHPELPIIITGSEDGTVRIW 256
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D IR++N + V AH + I +A HP++PFI ++ D L K++
Sbjct: 78 DMQIRVFNYNTLERVHMFEAH----SDYIRCIAVHPTQPFILTSSDDMLIKLW 126
>sp|Q5R664|COPB2_PONAB Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1
Length = 906
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +++W+ NKTCVQ + H +++ +FHP P I + DG +++
Sbjct: 208 DRLVKIWDYQNKTCVQTLEGHA----QNVSCASFHPELPIIITGSEDGTVRIW 256
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D IR++N + V AH + I +A HP++PFI ++ D L K++
Sbjct: 78 DMQIRVFNYNTLERVHMFEAH----SDYIRCIAVHPTQPFILTSSDDMLIKLW 126
>sp|P35606|COPB2_HUMAN Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2
Length = 906
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +++W+ NKTCVQ + H +++ +FHP P I + DG +++
Sbjct: 208 DRLVKIWDYQNKTCVQTLEGHA----QNVSCASFHPELPIIITGSEDGTVRIW 256
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D IR++N + V AH + I +A HP++PFI ++ D L K++
Sbjct: 78 DMQIRVFNYNTLERVHMFEAH----SDYIRCIAVHPTQPFILTSSDDMLIKLW 126
>sp|Q9QXE7|TBL1X_MOUSE F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus
GN=Tbl1x PE=2 SV=2
Length = 527
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 39 PSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGA 98
P+SNI L + D ++RLW+++ C+ +T H+ E + VAF P ++AS
Sbjct: 422 PNSNIML--ASASFDSTVRLWDVERGVCIHTLTKHQ----EPVYSVAFSPDGKYLASGSF 475
Query: 99 D 99
D
Sbjct: 476 D 476
>sp|Q4R4I8|COPB2_MACFA Coatomer subunit beta' OS=Macaca fascicularis GN=COPB2 PE=2 SV=1
Length = 906
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +++W+ NKTCVQ + H +++ +FHP P I + DG +++
Sbjct: 208 DRLVKIWDYQNKTCVQTLEGHA----QNVSCASFHPELPIIITGSEDGTVRIW 256
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D IR++N + V AH + I +A HP++PFI ++ D L K++
Sbjct: 78 DMQIRVFNYNTLERVHMFEAH----SDYIRCIAVHPTQPFILTSSDDMLIKLW 126
>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1
Length = 1207
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +IR+WN ++ C+ +T H ++ AFHPS+ I SA D +V+
Sbjct: 116 DQTIRIWNWQSRNCIAILTGH----SHYVMCAAFHPSEDLIVSASLDQTVRVW 164
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGAD 99
H+ I+LW+ T + H D + +AFHP++P S G D
Sbjct: 31 HNGRIQLWDYRMGTLLDRFDGH----DGPVRGIAFHPTQPLFVSGGDD 74
>sp|Q0J3D9|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica
GN=Os09g0127800 PE=2 SV=1
Length = 1218
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +IR+WN ++TCV +T H + ++ +FHP + + SA D +V+
Sbjct: 114 DQTIRIWNWQSRTCVAVLTGH----NHYVMCASFHPKEDLVVSASLDQTVRVW 162
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 6 SSVIYIW-----TLLELQTYARNDCPELNSEPPACQTIPSSNISLFDSRPGHDCSIRLWN 60
S VI +W TLL+ + +D P A Q + S G D I++WN
Sbjct: 30 SGVIQMWDYRMGTLLD--RFDEHDGPVRGVHFHATQPLFVSG--------GDDYKIKVWN 79
Query: 61 LDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
C+ + H + I V FH P+I SA D +++
Sbjct: 80 YKTHRCLFTLHGHL----DYIRTVQFHHEYPWIVSASDDQTIRIW 120
>sp|Q9AUR7|COPA2_ORYSJ Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica
GN=Os03g0711500 PE=2 SV=1
Length = 1218
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +IR+WN ++TCV +T H + ++ +FHP + + SA D +V+
Sbjct: 114 DQTIRIWNWQSRTCVAVLTGH----NHYVMCASFHPKEDLVVSASLDQTVRVW 162
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 6 SSVIYIW-----TLLELQTYARNDCPELNSEPPACQTIPSSNISLFDSRPGHDCSIRLWN 60
S VI +W TLL+ + +D P A Q + S G D I++WN
Sbjct: 30 SGVIQMWDYRMGTLLD--RFDEHDGPVRGVHFHATQPLFVSG--------GDDYKIKVWN 79
Query: 61 LDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
C+ + H + I V FH P+I SA D +++
Sbjct: 80 YKTHRCLFTLHGHL----DYIRTVQFHHECPWIVSASDDQTIRIW 120
>sp|Q9AUR8|COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica
GN=Os03g0711400 PE=2 SV=1
Length = 1218
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +IR+WN ++TCV +T H + ++ +FHP + + SA D +V+
Sbjct: 114 DQTIRIWNWQSRTCVAVLTGH----NHYVMCASFHPKEDLVVSASLDQTVRVW 162
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 6 SSVIYIW-----TLLELQTYARNDCPELNSEPPACQTIPSSNISLFDSRPGHDCSIRLWN 60
S VI +W TLL+ + +D P A Q + S G D I++WN
Sbjct: 30 SGVIQMWDYRMGTLLD--RFDEHDGPVRGVHFHATQPLFVSG--------GDDYKIKVWN 79
Query: 61 LDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
C+ + H + I V FH P+I SA D +++
Sbjct: 80 YKTHRCLFTLHGHL----DYIRTVQFHHEYPWIVSASDDQTIRIW 120
>sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2
SV=1
Length = 1218
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +IR+WN ++TC+ +T H + ++ +FHP + + SA D +V+
Sbjct: 114 DQTIRIWNWQSRTCISVLTGH----NHYVMCASFHPKEDLVVSASLDQTVRVW 162
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 39 PSSNISLFDSRP-----GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFI 93
P + +S+P G D I++WN C+ + H + I V FH P+I
Sbjct: 53 PVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHL----DYIRTVQFHHENPWI 108
Query: 94 ASAGADGLAKVF 105
SA D +++
Sbjct: 109 VSASDDQTIRIW 120
>sp|Q14137|BOP1_HUMAN Ribosome biogenesis protein BOP1 OS=Homo sapiens GN=BOP1 PE=1 SV=2
Length = 746
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 67 VQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
V+ + H D +LDV FHP++P++ S+GADG ++F
Sbjct: 707 VKVLKGHVLTRDLGVLDVIFHPTQPWVFSSGADGTVRLF 745
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADG 100
+D + ++LD T + H KK ++ VAFHP P AS DG
Sbjct: 640 YDSKLVWFDLDLSTKPYRMLRHHKK---ALRAVAFHPRYPLFASGSDDG 685
>sp|Q8CIE6|COPA_MOUSE Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=2
Length = 1224
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +IR+WN ++TCV +T H + ++ FHPS+ + SA D +V+
Sbjct: 114 DQTIRVWNWQSRTCVCVLTGH----NHYVMCAQFHPSEDLVVSASLDQTVRVW 162
>sp|Q27954|COPA_BOVIN Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1
Length = 1224
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +IR+WN ++TCV +T H + ++ FHPS+ + SA D +V+
Sbjct: 114 DQTIRVWNWQSRTCVCVLTGH----NHYVMCAQFHPSEDLVVSASLDQTVRVW 162
>sp|Q8BHJ5|TBL1R_MOUSE F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus
GN=Tbl1xr1 PE=2 SV=1
Length = 514
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 42 NISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGAD 99
N +L + D ++RLW++D C+ +T H+ E + VAF P ++AS D
Sbjct: 410 NANLMLASASFDSTVRLWDVDRGICIHTLTKHQ----EPVYSVAFSPDGRYLASGSFD 463
>sp|Q9BZK7|TBL1R_HUMAN F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens
GN=TBL1XR1 PE=1 SV=1
Length = 514
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 42 NISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGAD 99
N +L + D ++RLW++D C+ +T H+ E + VAF P ++AS D
Sbjct: 410 NANLMLASASFDSTVRLWDVDRGICIHTLTKHQ----EPVYSVAFSPDGRYLASGSFD 463
>sp|Q6GPC6|TB1RB_XENLA F-box-like/WD repeat-containing protein TBL1XR1-B OS=Xenopus laevis
GN=tbl1xr1-b PE=2 SV=1
Length = 522
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 42 NISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGAD 99
N +L + D ++RLW++D C+ +T H+ E + VAF P ++AS D
Sbjct: 418 NANLMLASASFDSTVRLWDVDRGICIHTLTKHQ----EPVYSVAFSPDGRYLASGSFD 471
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKP 91
D ++++W++ + TCV ++ AH K+ I + + P+ P
Sbjct: 378 DMTLKIWSMKHDTCVHDLQAHNKE----IYTIKWSPTGP 412
>sp|Q55FR9|COPA_DICDI Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3
SV=1
Length = 1221
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D IR+WN ++TC+ E+ H + ++ FHP + SA D +++
Sbjct: 114 DMVIRIWNWQSRTCIAELNGH----NHYVMSALFHPKDDLVVSASLDQTIRIW 162
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
G D I++WN + C+ + H+ + I V FH P+I S+ D + +++
Sbjct: 70 GDDYKIKVWNYKQRRCLFTLKGHK----DYIRSVEFHREAPWIVSSSDDMVIRIW 120
>sp|Q7SZM9|TB1RA_XENLA F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis
GN=tbl1xr1-a PE=1 SV=1
Length = 519
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 42 NISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGAD 99
N +L + D ++RLW++D C+ +T H+ E + VAF P ++AS D
Sbjct: 415 NANLMLASASFDSTVRLWDVDRGICIHTLTKHQ----EPVYSVAFSPDGRYLASGSFD 468
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKP 91
D ++++W++ + TCV ++ AH K+ I + + P+ P
Sbjct: 375 DMTLKIWSMKHDTCVHDLQAHNKE----IYTIKWSPTGP 409
>sp|Q1LV15|WDR69_DANRE Outer row dynein assembly protein 16 homolog OS=Danio rerio
GN=wdr69 PE=2 SV=2
Length = 415
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D S ++W+ + C+ + H ++ +LDV F+ + IA+A ADG ++VF
Sbjct: 282 DKSCKVWDAEGGQCLATLLGH----NDEVLDVCFNYTGQLIATASADGTSRVF 330
>sp|Q54YD8|COPB2_DICDI Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3
SV=1
Length = 1005
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +++W+ +KTCVQ + H ++ V +HP P I S DG K++
Sbjct: 209 DKLVKIWDYQSKTCVQTLEGHSN----NVSVVCYHPELPLILSGSEDGTVKLW 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,026,293
Number of Sequences: 539616
Number of extensions: 1446977
Number of successful extensions: 4401
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 259
Number of HSP's that attempted gapping in prelim test: 3700
Number of HSP's gapped (non-prelim): 901
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)