RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17135
(106 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 53.2 bits (126), Expect = 3e-10
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D ++R+W+ NK C++ + AH + + + FH + P++ + D KV+
Sbjct: 266 ADDKTLRVWDYKNKRCMKTLNAH----EHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
Score = 44.3 bits (103), Expect = 4e-07
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 19 TYARNDCPELNSEPPACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFD 78
++A SE +T S F D +I++W++ C+ + H D
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH----D 247
Query: 79 ESILDVAFHPSKPFIASAGADGLAKVF 105
+ V FH FI S D +V+
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVW 274
Score = 33.2 bits (74), Expect = 0.003
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 57 RLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
+ W ++ HR + V FHP + SA D KV+
Sbjct: 1 KEWIPR-PPEKYALSGHRS----PVTRVIFHPVFSVMVSASEDATIKVW 44
Score = 30.5 bits (67), Expect = 0.029
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRK 75
D +I++W+ + + + H
Sbjct: 36 SEDATIKVWDYETGDFERTLKGHTD 60
Score = 26.6 bits (57), Expect = 0.54
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 50 PGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +I++W + CV+ T HR+ V + IAS D +V+
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVR----MVRPNQDGTLIASCSNDQTVRVW 170
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 50.5 bits (119), Expect = 2e-09
Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D + +W+ + H D + + +A+ D K++
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGH----DNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 43.6 bits (101), Expect = 7e-07
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D S +LW++ C Q T H + I + F P+ A+ D ++F
Sbjct: 204 CDASAKLWDVREGMCRQTFTGH----ESDINAICFFPNGNAFATGSDDATCRLF 253
Score = 30.9 bits (68), Expect = 0.019
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D + RL++ + + +T I V+F S + + D V+
Sbjct: 245 SDDATCRLFD--LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 28.5 bits (62), Expect = 0.12
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 4/35 (11%)
Query: 66 CVQEITAHRKKFDESILDVAFHPSKPFIASAGADG 100
+ + H I + + + SA DG
Sbjct: 47 TRRTLRGHLA----KIYAMHWGTDSRLLVSASQDG 77
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 45.6 bits (106), Expect = 2e-07
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 5/55 (9%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
G D + W + + K S+L +I + D A V+
Sbjct: 284 GKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Score = 32.5 bits (72), Expect = 0.006
Identities = 6/51 (11%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKK-FDESILDVAFHPSKPFIASAGADG 100
G +++W++ + ++ D I P + G
Sbjct: 69 GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119
Score = 25.9 bits (55), Expect = 1.2
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 83 DVAFHPSKPFIASAGADGLAKVF 105
+ F + S G D L +
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAW 292
Score = 23.6 bits (49), Expect = 7.0
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 78 DESILDVAFHPSKPFIASAGADGLAKVF 105
E + V + + G G KV+
Sbjct: 51 GEVVCAVTISNPTRHVYT-GGKGCVKVW 77
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 45.2 bits (105), Expect = 2e-07
Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 51 GHDCSIRLWNLDNKTCVQEI-TAHRKKFDESILDVAFHPSKPFIASAGADGLAKVFV 106
D +++LW+L ++ + T + + +K A +G + +
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 333
Score = 34.4 bits (77), Expect = 0.001
Identities = 4/42 (9%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPF 92
D ++++W+ C++ + H + +
Sbjct: 34 SDDNTLKVWSAVTGKCLRTLVGHTG----GVWSSQMRDNIII 71
Score = 29.8 bits (65), Expect = 0.051
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D SIR+W+++ C+ +T H+ + S AD K++
Sbjct: 194 SLDTSIRVWDVETGNCIHTLTGHQSLT------SGMELKDNILVSGNADSTVKIW 242
Score = 29.4 bits (64), Expect = 0.079
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 5/47 (10%)
Query: 59 WNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
W + + H D+ ++ I S D KV+
Sbjct: 1 WRRGELKSPKVLKGH----DDHVIT-CLQFCGNRIVSGSDDNTLKVW 42
Score = 24.8 bits (52), Expect = 2.9
Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D ++++W++ C+Q + +K F+ ++ DG K++
Sbjct: 235 ADSTVKIWDIKTGQCLQT---LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 44.8 bits (104), Expect = 3e-07
Identities = 14/105 (13%), Positives = 31/105 (29%), Gaps = 8/105 (7%)
Query: 8 VIYIWTLLELQTYARNDCPELNSEPPACQTIPSSNISLFDSRP--------GHDCSIRLW 59
I ++ + P +S+ + SS + G D +R W
Sbjct: 257 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316
Query: 60 NLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKV 104
++ K + + H + +A +A G + +
Sbjct: 317 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL 361
Score = 27.5 bits (59), Expect = 0.31
Identities = 3/66 (4%), Positives = 17/66 (25%), Gaps = 11/66 (16%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKK------FDESILDVAFHPSKP-----FIASAGAD 99
+ + + + +++ + S + + S + +
Sbjct: 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK 145
Query: 100 GLAKVF 105
G ++
Sbjct: 146 GTTYIW 151
Score = 27.5 bits (59), Expect = 0.33
Identities = 11/40 (27%), Positives = 12/40 (30%), Gaps = 6/40 (15%)
Query: 65 TCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKV 104
AH D I V+ F S DG KV
Sbjct: 5 ATANAGKAH----DADIFSVSACN--SFTVSCSGDGYLKV 38
Score = 26.7 bits (57), Expect = 0.56
Identities = 5/64 (7%), Positives = 12/64 (18%), Gaps = 9/64 (14%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESI---------LDVAFHPSKPFIASAGADGL 101
D +++W+ F +A+ G
Sbjct: 31 SGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD 90
Query: 102 AKVF 105
+
Sbjct: 91 LLFY 94
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 44.4 bits (103), Expect = 4e-07
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFD--ESILDVAFHPSKPFIASAGADGLAKVF 105
D + W+ + + + HR + P A+ D A+++
Sbjct: 327 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
Score = 32.8 bits (73), Expect = 0.004
Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKF---DESILDVAFHPSKPFIASAGADGLAKVF 105
D ++R+W+ + V+ + + + +S+ V F + S D K++
Sbjct: 224 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
Score = 30.9 bits (68), Expect = 0.019
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 8/63 (12%)
Query: 51 GHDCSIRLWNLDNKTCVQ--------EITAHRKKFDESILDVAFHPSKPFIASAGADGLA 102
D S++LWNL N + +L VA + +I S D
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332
Query: 103 KVF 105
+
Sbjct: 333 LFW 335
Score = 29.4 bits (64), Expect = 0.069
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 14/61 (22%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHR--------------KKFDESILDVAFHPSKPFIASA 96
G + + +++ + + + V ++ D I V F P F+A+
Sbjct: 80 GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139
Query: 97 G 97
Sbjct: 140 A 140
Score = 28.2 bits (61), Expect = 0.18
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 32 PPACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKP 91
PP + S ++ + +D L+N + + V F
Sbjct: 17 PPFLLDLDSQSVPDALKKQTND-YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE 75
Query: 92 FIASAGADGLAKVF 105
++A+ G + +V+
Sbjct: 76 YLAT-GCNKTTQVY 88
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 43.7 bits (101), Expect = 7e-07
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +I++WN+ + I + D+ + +K + S A+G
Sbjct: 257 SADKTIKIWNVATLKVEKTIPVGTRIEDQQ---LGIIWTKQALVSISANGFINFV 308
Score = 39.9 bits (91), Expect = 1e-05
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADG 100
+ S+ + + T + T H PS + AS G
Sbjct: 35 CNGTSVYTVPVGSLTDTEIYTEHSH----QTTVAKTSPSGYYCASGDVHG 80
Score = 24.1 bits (50), Expect = 5.1
Identities = 11/71 (15%), Positives = 23/71 (32%)
Query: 35 CQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIA 94
+ P ++ G + ++ + S+ + + P IA
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 254
Query: 95 SAGADGLAKVF 105
SA AD K++
Sbjct: 255 SASADKTIKIW 265
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 42.6 bits (98), Expect = 2e-06
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
G D +IR+W++ CVQ+ T +++ + V + I S DG +
Sbjct: 270 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFY 323
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 41.0 bits (94), Expect = 5e-06
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
++ + ++ VQ K+ + + V + P I + G D A V+
Sbjct: 26 PNNHEVHIYEKSGNKWVQVHEL--KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 78
Score = 30.6 bits (67), Expect = 0.024
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 72 AHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
A+ E I A++ + IA + ++
Sbjct: 1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIY 34
Score = 26.0 bits (55), Expect = 1.0
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 6/76 (7%)
Query: 8 VIYIWTLLELQTYARNDCPELNSEPPACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCV 67
+ + + A L P + SL + GHDC L+ D+
Sbjct: 224 TVCLADADKKMAVATLASETL----PLLAVTFITESSLVAA--GHDCFPVLFTYDSAAGK 277
Query: 68 QEITAHRKKFDESILD 83
+S
Sbjct: 278 LSFGGRLDVPKQSSQR 293
Score = 23.7 bits (49), Expect = 6.8
Identities = 3/13 (23%), Positives = 8/13 (61%)
Query: 51 GHDCSIRLWNLDN 63
G D + +W++ +
Sbjct: 348 GMDGGMSIWDVRS 360
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 40.2 bits (92), Expect = 1e-05
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 5/57 (8%)
Query: 48 SRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKV 104
G D I WNL + ++ V S + A +D K
Sbjct: 267 YTAGSDGIISCWNLQTRKKIKNFAKF-----NEDSVVKIACSDNILCLATSDDTFKT 318
Score = 36.0 bits (81), Expect = 3e-04
Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAG 97
D S+ ++ D + ++ ++ +L F + G
Sbjct: 30 SWDGSLTVYKFDIQAKNVDLL-QSLRYKHPLLCCNFIDNTDLQIYVG 75
Score = 34.8 bits (78), Expect = 9e-04
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 66 CVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
VQ A + I D+ PSK + DG V+
Sbjct: 3 IVQIEQAP----KDYISDIKIIPSKSLLLITSWDGSLTVY 38
Score = 23.7 bits (49), Expect = 6.4
Identities = 10/108 (9%), Positives = 27/108 (25%), Gaps = 12/108 (11%)
Query: 9 IYIWTLLELQTYARNDCPELNSEPPACQTIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQ 68
+ + L + + + D + + D++
Sbjct: 172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC-SSIDGRVAVEFFDDQGDDY 230
Query: 69 -----------EITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
+ + + F P F+ +AG+DG+ +
Sbjct: 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 38.8 bits (88), Expect = 3e-05
Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 51 GHDCSIRLWNLDN-KTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +I ++++ ++ + AH + + ++ + + S+GAD K +
Sbjct: 234 SLDTNIFIYSVKRPMKIIKALNAH----KDGVNNLLWETPS-TLVSSGADACIKRW 284
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 38.7 bits (88), Expect = 3e-05
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVFV 106
G + ++NL + V + I V F +A+ DG + + +
Sbjct: 300 GSENQFNIYNLRSGKLVHANILKDA---DQIWSVNFKGKT-LVAAVEKDGQSFLEI 351
Score = 36.8 bits (83), Expect = 2e-04
Identities = 7/47 (14%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAG 97
D IR+++ NK + +++ H D + + + ++ +
Sbjct: 30 ADDKMIRVYDSINKKFLLQLSGH----DGGVWALKYAHGGILVSGST 72
Score = 23.7 bits (49), Expect = 5.9
Identities = 9/70 (12%), Positives = 22/70 (31%)
Query: 4 VPSSVIYIWTLLELQTYARNDCPELNSEPPACQTIPSSNISLFDSRPGHDCSIRLWNLDN 63
V S + +++ E ++ C I + D ++ +W L
Sbjct: 68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127
Query: 64 KTCVQEITAH 73
++ V +
Sbjct: 128 ESSVPDHGEE 137
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 37.7 bits (85), Expect = 1e-04
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D S+ +WN++ + I S ++ ++ I SAG D K +
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAH--AMSSVNSVIWLNETTIVSAGQDSNIKFW 295
Score = 31.1 bits (68), Expect = 0.019
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 65 TCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
+ Q H K +I ++ + SA A+G +
Sbjct: 3 SIDQVRYGHNK----AITALSSSADGKTLFSADAEGHINSW 39
Score = 28.0 bits (60), Expect = 0.23
Identities = 3/38 (7%), Positives = 8/38 (21%), Gaps = 3/38 (7%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHP 88
+ I W++ + I +
Sbjct: 31 DAEGHINSWDISTGISNRVFPDVHA---TMITGIKTTS 65
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 35.2 bits (79), Expect = 6e-04
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 15/62 (24%)
Query: 52 HDCSIRLWNL---------DNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLA 102
+D I++W+L C++ + H + + F I S+ D
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEH----SGRVFRLQFDEF--QIVSSSHDDTI 289
Query: 103 KV 104
+
Sbjct: 290 LI 291
Score = 31.7 bits (70), Expect = 0.010
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 51 GHDCSIRLWNLDNKTCVQEITAH 73
D +I++W+ + C + +T H
Sbjct: 32 LRDNTIKIWDKNTLECKRILTGH 54
Score = 27.1 bits (58), Expect = 0.35
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
D +IRLW+++ C++ + H + I S DG KV+
Sbjct: 196 SDNTIRLWDIECGACLRVLEGHEELVRC------IRFDNKRIVSGAYDGKIKVW 243
Score = 23.7 bits (49), Expect = 6.7
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 64 KTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
+ +Q I + + + + + I S D K++
Sbjct: 2 RHSLQRIHCR-SETSKGVYCLQYDDQ--KIVSGLRDNTIKIW 40
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 32.5 bits (72), Expect = 0.006
Identities = 6/54 (11%), Positives = 15/54 (27%), Gaps = 5/54 (9%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
+ ++L+ ++ + S V + GA G +
Sbjct: 258 AYNVLESFDLEKNASIKRVPL-----PHSYYSVNVSTDGSTVWLGGALGDLAAY 306
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 31.4 bits (69), Expect = 0.014
Identities = 4/69 (5%), Positives = 17/69 (24%), Gaps = 8/69 (11%)
Query: 37 TIPSSNISLFDSRPGHDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASA 96
+ + + +++ + + ++ D+ + +
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKV--------TEVKNNLTDLRLSADRKTVMVR 332
Query: 97 GADGLAKVF 105
DG F
Sbjct: 333 KDDGKIYTF 341
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 31.1 bits (69), Expect = 0.019
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVFV 106
I L + D+K V+ I ++ S ++ G D +
Sbjct: 41 AGQIALVDGDSKKIVKVIDTG-----YAVHISRMSASGRYLLVIGRDARIDMID 89
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 30.1 bits (66), Expect = 0.043
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 5/54 (9%)
Query: 52 HDCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVF 105
+ ++L + ++ D + VAF + G VF
Sbjct: 270 VLNRLAKYDLKQRKLIKAANL-----DHTYYCVAFDKKGDKLYLGGTFNDLAVF 318
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 29.4 bits (65), Expect = 0.059
Identities = 6/54 (11%), Positives = 13/54 (24%), Gaps = 5/54 (9%)
Query: 53 DCSIRLWNLDNKTCVQEITAHRKKFDESILDVAFHPSKPFIASAGADGLAKVFV 106
I L + + ++ S ++ G DG +
Sbjct: 41 AGQIALIDGSTYEIKTVLDTG-----YAVHISRLSASGRYLFVIGRDGKVNMID 89
>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific
cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId:
203496]}
Length = 427
Score = 23.6 bits (49), Expect = 6.8
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 81 ILDVAFHPSKPFIASAGADG 100
I + HP + A D
Sbjct: 14 ITGIVAHPKTKDLLYARTDI 33
>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 22.9 bits (48), Expect = 9.2
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 14 LLELQTYARNDCPELNSEPPACQTIPSSNISLFDSRPGHDCSIR 57
L E + + E N P+ S I + G + +
Sbjct: 21 LPEKRLRGKTLMYEFNHSHPSEVEKRESLIKEMFATVGENAWVE 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.418
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 388,491
Number of extensions: 15292
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 66
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.8 bits)