BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17136
         (225 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FUV|A Chain A, Phosphoglucomutase From Salmonella Typhimurium.
 pdb|2FUV|B Chain B, Phosphoglucomutase From Salmonella Typhimurium
          Length = 549

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 80  RKGQENLKHDLIRRIKMLE--YALKQERAKY-HQLKYGTELQQGDMNPPTFDEP 130
           R GQ   + DLI   ++    Y LK E     H +K+GT   +G     +F+EP
Sbjct: 9   RAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAGRHSFNEP 62


>pdb|3OLP|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
           Enzyme Important In The Virulence Of Multiple Human
           Pathogens
 pdb|3OLP|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
           Enzyme Important In The Virulence Of Multiple Human
           Pathogens
          Length = 570

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 80  RKGQENLKHDLIRRIKMLE--YALKQERAKY-HQLKYGTELQQGDMNPPTFDEP 130
           R GQ   + DLI   ++    Y LK E     H +K+GT   +G     +F+EP
Sbjct: 30  RAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAGRHSFNEP 83


>pdb|3NA5|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
           Enzyme Important In The Virulence Of Several Human
           Pathogens.
 pdb|3NA5|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
           Enzyme Important In The Virulence Of Several Human
           Pathogens
          Length = 570

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 80  RKGQENLKHDLIRRIKMLE--YALKQERAKY-HQLKYGTELQQGDMNPPTFDEP 130
           R GQ   + DLI   ++    Y LK E     H +K+GT   +G     +F+EP
Sbjct: 30  RAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAGRHSFNEP 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.131    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,611,385
Number of Sequences: 62578
Number of extensions: 250131
Number of successful extensions: 305
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 11
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)