Query psy17136
Match_columns 225
No_of_seqs 116 out of 139
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 22:48:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08232 Striatin: Striatin fa 100.0 2.6E-52 5.6E-57 338.7 12.0 133 40-176 1-134 (134)
2 KOG0642|consensus 100.0 1E-48 2.2E-53 375.3 11.4 152 33-186 10-161 (577)
3 TIGR02894 DNA_bind_RsfA transc 92.0 0.55 1.2E-05 40.6 6.5 61 37-98 78-138 (161)
4 PF04102 SlyX: SlyX; InterPro 91.5 0.75 1.6E-05 33.8 5.9 45 68-112 8-52 (69)
5 PRK00295 hypothetical protein; 90.6 2.1 4.6E-05 31.6 7.7 46 67-112 8-53 (68)
6 PRK00736 hypothetical protein; 89.7 2.9 6.3E-05 30.9 7.8 46 67-112 8-53 (68)
7 PF08606 Prp19: Prp19/Pso4-lik 86.9 7.7 0.00017 29.5 8.6 53 38-97 3-55 (70)
8 PRK02793 phi X174 lysis protei 86.3 6.2 0.00013 29.4 7.8 45 68-112 12-56 (72)
9 PRK04406 hypothetical protein; 86.0 6.3 0.00014 29.7 7.7 45 68-112 15-59 (75)
10 PRK02119 hypothetical protein; 85.3 7.4 0.00016 29.1 7.8 45 68-112 13-57 (73)
11 PRK00846 hypothetical protein; 82.8 10 0.00022 29.2 7.7 45 68-112 17-61 (77)
12 PRK04325 hypothetical protein; 82.4 12 0.00025 28.1 7.8 46 67-112 12-57 (74)
13 PRK14127 cell division protein 82.2 5.6 0.00012 32.2 6.5 64 38-101 22-101 (109)
14 smart00338 BRLZ basic region l 78.9 11 0.00024 26.6 6.5 55 54-108 9-63 (65)
15 PF14077 WD40_alt: Alternative 78.0 1.3 2.9E-05 31.5 1.4 24 68-91 15-38 (48)
16 PF11559 ADIP: Afadin- and alp 77.2 13 0.00027 30.3 7.1 46 67-112 76-121 (151)
17 PF02050 FliJ: Flagellar FliJ 73.1 24 0.00053 25.7 7.2 61 50-110 45-105 (123)
18 PF08074 CHDCT2: CHDCT2 (NUC03 70.5 7 0.00015 34.3 4.3 31 83-113 52-86 (173)
19 PF00170 bZIP_1: bZIP transcri 69.1 31 0.00067 24.3 6.7 43 66-108 21-63 (64)
20 PRK00888 ftsB cell division pr 63.5 30 0.00064 27.4 6.2 52 64-115 27-82 (105)
21 PF10211 Ax_dynein_light: Axon 63.3 56 0.0012 28.2 8.4 50 57-106 113-162 (189)
22 PF11932 DUF3450: Protein of u 63.2 21 0.00045 31.4 5.9 56 55-110 40-95 (251)
23 PRK09343 prefoldin subunit bet 60.1 34 0.00074 27.5 6.1 44 66-109 73-116 (121)
24 PF06657 Cep57_MT_bd: Centroso 60.0 73 0.0016 24.1 7.6 71 33-112 7-77 (79)
25 PF13600 DUF4140: N-terminal d 56.9 18 0.0004 27.4 3.9 39 60-98 66-104 (104)
26 COG3765 WzzB Chain length dete 56.7 18 0.00038 34.9 4.6 61 38-104 167-229 (347)
27 PF00038 Filament: Intermediat 55.9 42 0.00091 29.8 6.6 46 66-111 218-263 (312)
28 PF07888 CALCOCO1: Calcium bin 55.5 87 0.0019 31.9 9.3 80 13-92 93-192 (546)
29 PRK13916 plasmid segregation p 55.4 8.8 0.00019 30.7 2.0 19 154-172 36-54 (97)
30 PF09744 Jnk-SapK_ap_N: JNK_SA 54.6 18 0.0004 30.8 3.9 13 152-164 138-150 (158)
31 PRK13729 conjugal transfer pil 54.4 43 0.00093 33.5 6.9 79 34-113 47-125 (475)
32 PF04977 DivIC: Septum formati 52.9 68 0.0015 22.6 6.1 30 68-97 21-50 (80)
33 KOG1853|consensus 52.9 29 0.00062 32.9 5.1 41 61-101 81-121 (333)
34 PF10267 Tmemb_cc2: Predicted 50.2 1.2E+02 0.0027 29.5 9.2 42 68-112 223-264 (395)
35 PRK11637 AmiB activator; Provi 49.2 90 0.002 29.5 8.0 25 47-71 174-198 (428)
36 PF14818 DUF4482: Domain of un 48.9 35 0.00075 29.1 4.7 47 57-106 9-55 (141)
37 PF02996 Prefoldin: Prefoldin 46.5 43 0.00094 25.6 4.6 46 37-103 71-116 (120)
38 KOG3119|consensus 46.1 43 0.00093 30.5 5.1 37 67-110 218-254 (269)
39 PF07058 Myosin_HC-like: Myosi 45.8 30 0.00065 33.3 4.2 40 65-104 123-162 (351)
40 PF05837 CENP-H: Centromere pr 45.4 1.2E+02 0.0027 23.8 7.0 72 40-112 7-78 (106)
41 TIGR02338 gimC_beta prefoldin, 45.0 73 0.0016 24.9 5.7 36 67-102 70-105 (110)
42 PRK15471 chain length determin 43.3 55 0.0012 30.7 5.5 67 34-107 141-210 (325)
43 PF03528 Rabaptin: Rabaptin; 43.3 63 0.0014 26.3 5.2 53 49-102 41-96 (106)
44 PF08172 CASP_C: CASP C termin 42.4 45 0.00098 30.3 4.7 32 66-97 88-119 (248)
45 PRK11638 lipopolysaccharide bi 41.5 60 0.0013 30.6 5.5 68 34-107 162-231 (342)
46 KOG2077|consensus 41.5 87 0.0019 32.8 6.9 65 45-109 303-374 (832)
47 PRK10884 SH3 domain-containing 40.9 2E+02 0.0044 25.4 8.4 73 40-112 94-166 (206)
48 PF14818 DUF4482: Domain of un 40.7 18 0.00039 30.8 1.7 32 54-85 24-55 (141)
49 PF12958 DUF3847: Protein of u 40.0 1.2E+02 0.0026 23.8 6.1 45 66-112 3-47 (86)
50 PRK10381 LPS O-antigen length 39.7 1.4E+02 0.003 28.5 7.6 65 36-106 183-249 (377)
51 PF06698 DUF1192: Protein of u 39.1 41 0.00089 24.7 3.2 19 67-85 24-42 (59)
52 KOG3850|consensus 38.9 2.8E+02 0.006 27.8 9.6 88 6-112 224-312 (455)
53 PRK10698 phage shock protein P 37.5 1.1E+02 0.0024 27.0 6.2 48 65-112 93-140 (222)
54 PF07716 bZIP_2: Basic region 36.9 1.1E+02 0.0024 21.0 5.0 34 66-99 20-53 (54)
55 PF10243 MIP-T3: Microtubule-b 36.0 12 0.00026 36.7 0.0 72 39-113 452-523 (539)
56 PF01920 Prefoldin_2: Prefoldi 35.7 1.4E+02 0.0029 22.1 5.7 36 67-102 65-100 (106)
57 KOG0161|consensus 35.0 1.3E+02 0.0029 35.0 7.7 60 48-107 941-1000(1930)
58 COG1579 Zn-ribbon protein, pos 34.9 1.6E+02 0.0034 27.0 6.9 59 50-108 89-147 (239)
59 PF00261 Tropomyosin: Tropomyo 34.0 1.4E+02 0.0031 26.2 6.3 46 67-112 172-224 (237)
60 PF15070 GOLGA2L5: Putative go 34.0 1.9E+02 0.0041 29.8 8.0 64 43-109 4-67 (617)
61 PF10186 Atg14: UV radiation r 33.9 1.5E+02 0.0032 25.6 6.4 45 65-109 64-108 (302)
62 PF10779 XhlA: Haemolysin XhlA 33.7 1.9E+02 0.0041 21.1 6.0 45 68-112 3-47 (71)
63 KOG0804|consensus 33.4 1.7E+02 0.0037 29.6 7.4 33 79-111 362-394 (493)
64 PF07334 IFP_35_N: Interferon- 33.3 1.5E+02 0.0033 22.9 5.6 23 87-109 9-31 (76)
65 PF08581 Tup_N: Tup N-terminal 33.1 2.2E+02 0.0048 21.8 7.6 61 41-108 2-62 (79)
66 KOG0960|consensus 32.8 53 0.0011 32.8 3.8 35 39-73 350-384 (467)
67 PF00261 Tropomyosin: Tropomyo 32.7 2.6E+02 0.0057 24.5 7.8 32 78-109 155-186 (237)
68 PF10359 Fmp27_WPPW: RNA pol I 32.6 2.9E+02 0.0062 27.1 8.7 23 147-169 273-296 (475)
69 PRK01156 chromosome segregatio 32.4 1.6E+02 0.0034 30.4 7.2 41 45-85 669-709 (895)
70 KOG4603|consensus 32.4 2.2E+02 0.0047 25.7 7.1 67 36-102 20-117 (201)
71 PF12548 DUF3740: Sulfatase pr 32.2 53 0.0012 27.8 3.3 38 56-93 98-135 (145)
72 smart00667 LisH Lissencephaly 32.1 28 0.0006 20.3 1.2 19 153-171 5-23 (34)
73 PF13935 Ead_Ea22: Ead/Ea22-li 31.9 1.1E+02 0.0025 25.0 5.1 43 42-84 66-110 (139)
74 PHA02562 46 endonuclease subun 31.8 2.1E+02 0.0045 27.4 7.5 65 40-104 303-370 (562)
75 PF04156 IncA: IncA protein; 30.8 3.1E+02 0.0067 22.7 8.5 18 92-109 158-175 (191)
76 PF11461 RILP: Rab interacting 30.6 44 0.00095 24.7 2.2 17 65-81 11-27 (60)
77 PF10805 DUF2730: Protein of u 30.0 98 0.0021 24.4 4.3 40 70-109 48-89 (106)
78 PF01763 Herpes_UL6: Herpesvir 29.6 1.2E+02 0.0026 31.1 5.7 39 70-108 369-407 (557)
79 TIGR02449 conserved hypothetic 29.6 1.1E+02 0.0023 22.9 4.1 28 67-94 24-51 (65)
80 PRK09039 hypothetical protein; 29.4 1.2E+02 0.0027 28.4 5.5 39 66-104 146-184 (343)
81 PF13094 CENP-Q: CENP-Q, a CEN 29.4 2.1E+02 0.0045 23.5 6.2 45 68-112 38-82 (160)
82 PF09766 FimP: Fms-interacting 29.3 1.1E+02 0.0023 29.0 5.0 47 58-104 94-141 (355)
83 PF09304 Cortex-I_coil: Cortex 28.5 3.3E+02 0.0072 22.3 8.5 49 58-106 31-79 (107)
84 PF07888 CALCOCO1: Calcium bin 28.2 1.6E+02 0.0034 30.2 6.2 48 58-112 351-398 (546)
85 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.9 1.1E+02 0.0023 24.7 4.3 40 55-94 89-128 (132)
86 PF08513 LisH: LisH; InterPro 27.9 28 0.00061 21.3 0.7 15 156-170 5-19 (27)
87 PF07111 HCR: Alpha helical co 26.0 1.1E+02 0.0024 32.3 4.9 44 59-102 237-280 (739)
88 KOG0977|consensus 25.8 2.1E+02 0.0045 29.3 6.7 23 88-110 158-180 (546)
89 PF10367 Vps39_2: Vacuolar sor 25.8 1.4E+02 0.003 21.9 4.2 39 38-76 23-61 (109)
90 PF00170 bZIP_1: bZIP transcri 25.6 2.4E+02 0.0052 19.7 5.5 32 68-99 30-61 (64)
91 cd00890 Prefoldin Prefoldin is 25.0 2E+02 0.0043 22.0 5.1 46 37-103 81-126 (129)
92 PF11559 ADIP: Afadin- and alp 24.9 3.7E+02 0.0081 21.7 9.0 70 40-109 35-104 (151)
93 PF14193 DUF4315: Domain of un 24.8 1.8E+02 0.0039 22.5 4.8 21 66-86 17-37 (83)
94 PF07106 TBPIP: Tat binding pr 24.7 2.6E+02 0.0057 23.0 6.1 47 67-113 89-137 (169)
95 PF15619 Lebercilin: Ciliary p 24.5 2E+02 0.0043 25.2 5.6 42 63-104 117-158 (194)
96 PF12718 Tropomyosin_1: Tropom 23.8 2.6E+02 0.0057 23.1 5.9 45 68-112 18-62 (143)
97 PF04201 TPD52: Tumour protein 23.6 1.7E+02 0.0037 25.5 4.9 40 60-99 25-64 (162)
98 PF10205 KLRAQ: Predicted coil 23.2 2.4E+02 0.0052 22.9 5.3 33 71-103 40-72 (102)
99 KOG3634|consensus 23.2 2E+02 0.0043 28.1 5.7 43 65-107 231-273 (361)
100 COG1382 GimC Prefoldin, chaper 23.1 2.6E+02 0.0056 23.2 5.6 38 66-103 72-109 (119)
101 PF12210 Hrs_helical: Hepatocy 22.8 2.7E+02 0.0058 22.5 5.5 46 42-95 46-91 (96)
102 PF10046 BLOC1_2: Biogenesis o 22.4 2.5E+02 0.0054 21.7 5.2 34 69-102 64-97 (99)
103 PF10018 Med4: Vitamin-D-recep 22.2 2.2E+02 0.0049 24.2 5.4 38 67-104 25-62 (188)
104 TIGR02977 phageshock_pspA phag 21.6 3.1E+02 0.0068 23.8 6.2 46 65-110 93-138 (219)
105 COG5509 Uncharacterized small 21.5 90 0.0019 23.6 2.4 17 67-83 28-44 (65)
106 PF05377 FlaC_arch: Flagella a 21.5 3.3E+02 0.0072 19.9 5.4 42 67-108 3-44 (55)
107 cd00584 Prefoldin_alpha Prefol 21.3 2.6E+02 0.0055 21.9 5.2 47 36-103 80-126 (129)
108 KOG0250|consensus 21.3 7.2E+02 0.016 27.8 9.8 22 36-57 654-675 (1074)
109 PF02403 Seryl_tRNA_N: Seryl-t 21.2 3.7E+02 0.0081 20.3 7.4 73 39-112 26-101 (108)
110 cd04786 HTH_MerR-like_sg7 Heli 21.2 2.7E+02 0.0058 22.6 5.4 53 38-97 57-111 (131)
111 PF08647 BRE1: BRE1 E3 ubiquit 21.1 3.9E+02 0.0085 20.5 7.7 47 64-110 24-70 (96)
112 KOG0161|consensus 20.9 2.9E+02 0.0063 32.4 7.2 65 48-112 1060-1124(1930)
113 TIGR02231 conserved hypothetic 20.6 1.6E+02 0.0035 28.6 4.7 40 41-80 69-108 (525)
114 PF03961 DUF342: Protein of un 20.6 3.6E+02 0.0078 25.8 6.9 76 34-110 318-407 (451)
115 PF02994 Transposase_22: L1 tr 20.4 2.4E+02 0.0053 26.7 5.7 37 68-104 148-184 (370)
116 PRK05431 seryl-tRNA synthetase 20.3 5.7E+02 0.012 24.7 8.2 72 40-112 26-100 (425)
117 KOG0850|consensus 20.2 1.2E+02 0.0025 28.2 3.4 55 48-119 134-189 (245)
118 PF09304 Cortex-I_coil: Cortex 20.1 4.1E+02 0.0089 21.8 6.1 54 58-111 3-56 (107)
119 TIGR02894 DNA_bind_RsfA transc 20.1 2.4E+02 0.0053 24.6 5.1 18 87-104 113-130 (161)
No 1
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=100.00 E-value=2.6e-52 Score=338.69 Aligned_cols=133 Identities=59% Similarity=1.007 Sum_probs=111.2
Q ss_pred chHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCC
Q psy17136 40 SIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLKYGTELQQ 119 (225)
Q Consensus 40 tlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk~g~~~~q 119 (225)
||||||||||+||++|||||++|+||||||+||||+||||+|+||++++||+||||||||||||||+||+++++|+++++
T Consensus 1 TLpGVl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~~~~ 80 (134)
T PF08232_consen 1 TLPGVLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTDLNQ 80 (134)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCccccccchhHhhHHHHHHHHHhCCCccccchhh
Q psy17136 120 GDMNPPTFD-EPGVPEVNVDSEAPFTSVSNISWKQGRQILRQYLQEIGYTDTIIDVRS 176 (225)
Q Consensus 120 ~~~k~~~~e-~~~~~~~~~~~~~~~~~~s~~~wkqgRqLLrqYLqEIGytD~Ildvrs 176 (225)
...+++... .+..... +...+....+...|+++|++|++||+|||| +|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~R~~L~~~l~Ei~y--li~~~~~ 134 (134)
T PF08232_consen 81 SQKKKSSSSDEELEEDS--DEESSSPEIDESKWKKSRQLLRKYLQEIGY--LILDPRS 134 (134)
T ss_pred ccccccccccccccCCc--ccccCCCcccHHHHHHHHHHHHHHHHHHHH--HhCCCCC
Confidence 322222211 1111111 111223346778999999999999999999 9999875
No 2
>KOG0642|consensus
Probab=100.00 E-value=1e-48 Score=375.28 Aligned_cols=152 Identities=57% Similarity=0.915 Sum_probs=135.3
Q ss_pred CCCCcccchHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 33 GGQRIQYSIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 33 ~~~~~~YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
+...|+|||||||||||+||+++||+|+.||+|||||||||||||||||+||+++.||+||||||||||||||+||+.++
T Consensus 10 a~~~P~~~lpGilhyiQ~E~~knE~dr~~WElERaElqariAfLqgErk~qenlk~dl~rR~kmlE~~lkeerak~~~lq 89 (577)
T KOG0642|consen 10 ATARPQYTLPGILHYIQHEWTKNERDRARWELERAELQARIAFLQGERKGQENLKMDLVRRIKMLEFALKEERAKYNKLQ 89 (577)
T ss_pred cccCCcccchHHHHHHHhHhhhhhhhhhheehhhhhHHHHHHHHhcchhhhHHHHHHHHHHHhcccchhHHhhhhhhccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccchhHhhHHHHHHHHHhCCCccccchhhHHHHHHhcCC
Q psy17136 113 YGTELQQGDMNPPTFDEPGVPEVNVDSEAPFTSVSNISWKQGRQILRQYLQEIGYTDTIIDVRSNRVRTLLGLN 186 (225)
Q Consensus 113 ~g~~~~q~~~k~~~~e~~~~~~~~~~~~~~~~~~s~~~wkqgRqLLrqYLqEIGytD~Ildvrs~Rvr~lLgl~ 186 (225)
+|+++++.+.+++......+...... .-...++.+.|++||++||+|||||||+|+|+|+||+||++++|+.
T Consensus 90 ~gte~~~~d~~~~~~~s~~t~~~~~~--~~~~~~~~~~w~~~r~~lkk~leEi~y~t~i~Dv~S~~v~~~~~~~ 161 (577)
T KOG0642|consen 90 PGTELPQLDEKPVADNSEVTGNTLAA--ANTLENAILLWKQGRLLLKKYLEEIGYTTNIMDVRSKRVLSLLGLS 161 (577)
T ss_pred ccccccccccccchhcCccccccccc--cccccchHHHHHHHHHHHHHhhhcccccccccchhhhHHhhccCcc
Confidence 99999999988775544332222111 1123467789999999999999999999999999999999999998
No 3
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=91.96 E-value=0.55 Score=40.58 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=33.6
Q ss_pred cccchHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHH
Q psy17136 37 IQYSIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLE 98 (225)
Q Consensus 37 ~~YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE 98 (225)
...||..||.|||.--...+ .-..+..|...++..++.|+.+.+.++.-+..|..++.|+|
T Consensus 78 ~~ltl~~vI~fLq~l~~~~~-~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 78 GSLTLQDVISFLQNLKTTNP-SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred ccCCHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999996443211 22233344444444444444444444444455555555554
No 4
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.45 E-value=0.75 Score=33.76 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
+|..||||++--+..+...-..+.+.|..|+..|+.-+.|...+.
T Consensus 8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 8 ELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999999988765
No 5
>PRK00295 hypothetical protein; Provisional
Probab=90.61 E-value=2.1 Score=31.57 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
.+|..||||+|.-+..+...-..+.+.|..|+..|+.-+.+.....
T Consensus 8 ~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 8 TELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677889999988888888888888999999999998877776654
No 6
>PRK00736 hypothetical protein; Provisional
Probab=89.71 E-value=2.9 Score=30.85 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
.+|..||||+|.-+..+...-..+.+.|..|+..|+.-..+.....
T Consensus 8 ~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 8 TELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999998888888888889999999999988877766543
No 7
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=86.93 E-value=7.7 Score=29.54 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=40.0
Q ss_pred ccchHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHH
Q psy17136 38 QYSIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKML 97 (225)
Q Consensus 38 ~YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKML 97 (225)
.|+||++|.-||.||--+ .+|-.+|+.+.....-|+...=.-...-+|-|.-|
T Consensus 3 ~~SIP~lL~~lQnEWDa~-------mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl 55 (70)
T PF08606_consen 3 ATSIPSLLSTLQNEWDAL-------MLENFTLRKQLDQTRQELSHALYQHDAACRVIARL 55 (70)
T ss_pred cCcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 589999999999999876 47888899888888888865544444444544443
No 8
>PRK02793 phi X174 lysis protein; Provisional
Probab=86.35 E-value=6.2 Score=29.42 Aligned_cols=45 Identities=18% Similarity=0.107 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
+|..||||+|.-+..+...-..+.+.|..|+..|+.-..+...+.
T Consensus 12 ~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 12 ELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466777777777777777777778889999999888877776654
No 9
>PRK04406 hypothetical protein; Provisional
Probab=85.98 E-value=6.3 Score=29.75 Aligned_cols=45 Identities=13% Similarity=0.162 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
+|..||||+|--+..+...-..+.+-|..|+..|+.-+.+.....
T Consensus 15 ~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 15 DLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456777777777777777777778888899988888877766554
No 10
>PRK02119 hypothetical protein; Provisional
Probab=85.29 E-value=7.4 Score=29.13 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
+|..||||+|--+..+...-..+.+-|..|+..|+.-+.+.....
T Consensus 13 ~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 13 ELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456677777777777777777778888889988888877766654
No 11
>PRK00846 hypothetical protein; Provisional
Probab=82.80 E-value=10 Score=29.17 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
+|..||||.|.=...+...-..+.+-|..|...|+.-..+.....
T Consensus 17 ~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 17 ELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777766666666677778889999999998888877765
No 12
>PRK04325 hypothetical protein; Provisional
Probab=82.40 E-value=12 Score=28.09 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
.+|..|+||+|.-+..+...-..+.+.|..|+..|+.-..+.....
T Consensus 12 ~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 12 TELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567888888888888888888888899999999888877776654
No 13
>PRK14127 cell division protein GpsB; Provisional
Probab=82.20 E-value=5.6 Score=32.24 Aligned_cols=64 Identities=19% Similarity=0.341 Sum_probs=41.1
Q ss_pred ccchHHHHHHHHH---HHHhhhhhhccccccHHHHHHHHHHHhhhhhhh-------------HhHHHHHHHHHHHHHHHH
Q psy17136 38 QYSIPGILHFIQH---EWARFEMERSQWEVDKAELNARIAFLQGERKGQ-------------ENLKHDLIRRIKMLEYAL 101 (225)
Q Consensus 38 ~YtlpGVL~fLQ~---Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~q-------------enlk~dL~RRIKMLE~AL 101 (225)
.|.--.|=.||.. ++..+..+...-.-|-+.|+.+|+.+++..... -..+-|+++||.-||.++
T Consensus 22 GYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 22 GYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHV 101 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHH
Confidence 5888888888874 444444444434444445555555555544432 247889999999999775
No 14
>smart00338 BRLZ basic region leucin zipper.
Probab=78.91 E-value=11 Score=26.61 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=41.1
Q ss_pred hhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q psy17136 54 RFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKY 108 (225)
Q Consensus 54 r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~ 108 (225)
+.++.|..---=|.--+..|..||++...++..+.+|...|..|+..+..-+..+
T Consensus 9 R~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 9 RRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444443333334445788999999999999999999999999998887766554
No 15
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=78.03 E-value=1.3 Score=31.48 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHH
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLI 91 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~ 91 (225)
.++.|+++||.|.+.++.+++||.
T Consensus 15 ~l~vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 15 QLRVRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred hheeeHHHHHHHHHHHHHHhHHHH
Confidence 468899999999999999999985
No 16
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=77.17 E-value=13 Score=30.26 Aligned_cols=46 Identities=30% Similarity=0.434 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
..++.+++.++-+....++--+.|.+.++.++.++|.++....+++
T Consensus 76 ~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 76 ERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888888888888888888888888888888877765
No 17
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=73.08 E-value=24 Score=25.67 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=50.1
Q ss_pred HHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy17136 50 HEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQ 110 (225)
Q Consensus 50 ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~ 110 (225)
.+|..+......++-...+++..|..++.+.......-....++.|.||.-..+.+..|..
T Consensus 45 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~~ 105 (123)
T PF02050_consen 45 AQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQQ 105 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677778888888999999999999999999999999999999887777766653
No 18
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.45 E-value=7 Score=34.30 Aligned_cols=31 Identities=45% Similarity=0.455 Sum_probs=25.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHH----HHHhhhccc
Q psy17136 83 QENLKHDLIRRIKMLEYALKQE----RAKYHQLKY 113 (225)
Q Consensus 83 qenlk~dL~RRIKMLE~ALkqE----RaK~~~lk~ 113 (225)
+|--++.|.||.|+||.||--| ||.|..+..
T Consensus 52 le~KNkFLaRRfKLLEQaLvIEEqLrRAa~lnl~~ 86 (173)
T PF08074_consen 52 LEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQ 86 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhhccCcC
Confidence 4566799999999999999988 777776554
No 19
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=69.08 E-value=31 Score=24.35 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q psy17136 66 KAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKY 108 (225)
Q Consensus 66 RaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~ 108 (225)
|.--+..|..||.....++.-+..|...+..|+..+.......
T Consensus 21 R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 21 RQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445678888999999999999999999999998877766654
No 20
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=63.50 E-value=30 Score=27.40 Aligned_cols=52 Identities=21% Similarity=0.196 Sum_probs=37.7
Q ss_pred ccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHH--HHHHH--HHHhhhcccCC
Q psy17136 64 VDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEY--ALKQE--RAKYHQLKYGT 115 (225)
Q Consensus 64 iERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~--ALkqE--RaK~~~lk~g~ 115 (225)
+.-.+++++|+.++.+...++.-+.+|.+.|+.|.- ..-.+ |.++.=.+.|+
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gE 82 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGE 82 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCC
Confidence 456788999999999999999999999999999943 33344 44444333333
No 21
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=63.25 E-value=56 Score=28.22 Aligned_cols=50 Identities=26% Similarity=0.240 Sum_probs=40.9
Q ss_pred hhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy17136 57 MERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERA 106 (225)
Q Consensus 57 r~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERa 106 (225)
+.....+..+.+|..+|+.|+.+...++.-..+|..++..+|......++
T Consensus 113 rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 113 RKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666788999999999999999999999999999998877655544
No 22
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=63.21 E-value=21 Score=31.44 Aligned_cols=56 Identities=25% Similarity=0.272 Sum_probs=44.5
Q ss_pred hhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy17136 55 FEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQ 110 (225)
Q Consensus 55 ~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~ 110 (225)
....-..|.-|+.+|.++|..|+.|...++.-++.|.+.|.-++..+..--.+...
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467889999999999999999999999998888888888777666555444333
No 23
>PRK09343 prefoldin subunit beta; Provisional
Probab=60.10 E-value=34 Score=27.50 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17136 66 KAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYH 109 (225)
Q Consensus 66 RaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~ 109 (225)
+.++..||.+++.+.+.++.-...|...++-++..|++--.++.
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56778999999999999999999999999999988887766644
No 24
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=60.03 E-value=73 Score=24.15 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=49.3
Q ss_pred CCCCcccchHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 33 GGQRIQYSIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 33 ~~~~~~YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
+++.|...|..||.=||+||..+= +|-++|+++...+..-. -...+++|...|++|=..+-..-.++++|.
T Consensus 7 ~s~~p~~~Ls~vl~~LqDE~~hm~-------~e~~~L~~~~~~~d~s~--~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 7 PSQSPGEALSEVLKALQDEFGHMK-------MEHQELQDEYKQMDPSL--GRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccccc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566678899999999999998764 46677777777666432 234557777777777666655555555553
No 25
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=56.89 E-value=18 Score=27.41 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=32.9
Q ss_pred ccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHH
Q psy17136 60 SQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLE 98 (225)
Q Consensus 60 ~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE 98 (225)
..|..+-.+++++|..|+.++.....-..-+..+|+.|+
T Consensus 66 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 66 ESDSPELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456778888999999999999998888888888888774
No 26
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=56.73 E-value=18 Score=34.86 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHH--HHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q psy17136 38 QYSIPGILHFIQHE--WARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQE 104 (225)
Q Consensus 38 ~YtlpGVL~fLQ~E--w~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqE 104 (225)
+=.|.|-|.|+-.. -.-+++-+..|++.+..|+.+|..+++-.+ .....||.-|++||+=-
T Consensus 167 q~~L~gyI~~~s~~v~~el~~~l~~~~~~rt~~~~~kl~~~~~~ak------~~~d~rI~ql~~Al~iA 229 (347)
T COG3765 167 QDLLRGYIAFVSQKVAQELLDNLKDAIALRTRQLKDKLKRQEEVAK------AQKDVRIQQLKEALKIA 229 (347)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 44566666666543 234566788999999999999999887554 55678999999999743
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=55.94 E-value=42 Score=29.79 Aligned_cols=46 Identities=30% Similarity=0.381 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy17136 66 KAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQL 111 (225)
Q Consensus 66 RaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~l 111 (225)
-.+++.+|..|+.++.+++..+..|.++|.-||.-+..++..|...
T Consensus 218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~ 263 (312)
T PF00038_consen 218 LKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAE 263 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999999999999887753
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=55.51 E-value=87 Score=31.93 Aligned_cols=80 Identities=19% Similarity=0.151 Sum_probs=42.8
Q ss_pred cccccCC-ccccccCCCCCCCCCCCcccc-------------------hHHHHHHHHHHHHhhhhhhccccccHHHHHHH
Q psy17136 13 SSVNQNG-QIGTNSNNNKSDDGGQRIQYS-------------------IPGILHFIQHEWARFEMERSQWEVDKAELNAR 72 (225)
Q Consensus 13 ~~~~~~~-~~~~~~~~~~~~~~~~~~~Yt-------------------lpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~ar 72 (225)
||.++.| ..|++.|-+-.+..+-..-.| +.+=+.-++.|-..+.......+-|...|+.+
T Consensus 93 cYv~~~g~V~G~S~pFqf~~~~p~eeLvtle~e~~~~DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~ 172 (546)
T PF07888_consen 93 CYVDQKGEVRGASTPFQFRAPKPLEELVTLEDEDGNSDMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREE 172 (546)
T ss_pred EEECCCccEEEecCCcccCCCCccccceeecccCCCcceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999 778777765543222110011 33444455555555555555555555666666
Q ss_pred HHHHhhhhhhhHhHHHHHHH
Q psy17136 73 IAFLQGERKGQENLKHDLIR 92 (225)
Q Consensus 73 Ia~LEGErk~qenlk~dL~R 92 (225)
|..|+.++...+.-...|..
T Consensus 173 v~~l~~eL~~~~ee~e~L~~ 192 (546)
T PF07888_consen 173 VERLEAELEQEEEEMEQLKQ 192 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666555544444333333
No 29
>PRK13916 plasmid segregation protein ParR; Provisional
Probab=55.41 E-value=8.8 Score=30.70 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHhCCCcccc
Q psy17136 154 GRQILRQYLQEIGYTDTII 172 (225)
Q Consensus 154 gRqLLrqYLqEIGytD~Il 172 (225)
-|..|++|+||+|++--|-
T Consensus 36 iR~~L~rYI~~~G~~~PiP 54 (97)
T PRK13916 36 IREALRRYIEEIGENPPIP 54 (97)
T ss_pred HHHHHHHHHHhcCCCCCCC
Confidence 6999999999999987654
No 30
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=54.56 E-value=18 Score=30.81 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=9.0
Q ss_pred hHhhHHHHHHHHH
Q psy17136 152 KQGRQILRQYLQE 164 (225)
Q Consensus 152 kqgRqLLrqYLqE 164 (225)
...|++|+.|..-
T Consensus 138 er~~e~l~~~~e~ 150 (158)
T PF09744_consen 138 ERERELLRKLKEH 150 (158)
T ss_pred HHHHHHHHHHHHH
Confidence 3578888887653
No 31
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=54.44 E-value=43 Score=33.55 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=54.7
Q ss_pred CCCcccchHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17136 34 GQRIQYSIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLKY 113 (225)
Q Consensus 34 ~~~~~YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk~ 113 (225)
++.+.-.+-||++=+-++--+- ..=.++...-+||+.+|+.|+.|.........++.++|+-||-.+++.+++...++.
T Consensus 47 ~~~~~~~~~~vV~~~FddkVnq-SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 47 EQEPVPDMTGVVDTTFDDKVRQ-HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred ccCCCCCccceecchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444566777776544433111 112345556778889999998887766788889999999999999999888755443
No 32
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=52.89 E-value=68 Score=22.57 Aligned_cols=30 Identities=33% Similarity=0.347 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHH
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKML 97 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKML 97 (225)
.++.+|+.|+.+...++.-+.+|...|+.|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666677888888887
No 33
>KOG1853|consensus
Probab=52.86 E-value=29 Score=32.89 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=29.6
Q ss_pred cccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHH
Q psy17136 61 QWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYAL 101 (225)
Q Consensus 61 ~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~AL 101 (225)
..+.-+++.-.+|..|+.++.....++..|.+||.-||.|-
T Consensus 81 k~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaN 121 (333)
T KOG1853|consen 81 KQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQAN 121 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344455556788888888888888888888888888764
No 34
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=50.20 E-value=1.2e+02 Score=29.51 Aligned_cols=42 Identities=29% Similarity=0.436 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
|++.....|+.+. +.|+.++.+-++.+-.+|..||-+|..|-
T Consensus 223 eik~~~~~L~~~~---e~Lk~~~~~e~~~~~~~LqEEr~R~erLE 264 (395)
T PF10267_consen 223 EIKESQSRLEESI---EKLKEQYQREYQFILEALQEERYRYERLE 264 (395)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5566667777665 56777788888899999999999988775
No 35
>PRK11637 AmiB activator; Provisional
Probab=49.21 E-value=90 Score=29.53 Aligned_cols=25 Identities=4% Similarity=0.194 Sum_probs=9.5
Q ss_pred HHHHHHHhhhhhhccccccHHHHHH
Q psy17136 47 FIQHEWARFEMERSQWEVDKAELNA 71 (225)
Q Consensus 47 fLQ~Ew~r~Er~r~~WeiERaEm~a 71 (225)
.++..-..++..+..=+-++++++.
T Consensus 174 ~l~~~~~~L~~~k~~le~~~~~l~~ 198 (428)
T PRK11637 174 ELKQTREELAAQKAELEEKQSQQKT 198 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444333333333333333
No 36
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=48.93 E-value=35 Score=29.05 Aligned_cols=47 Identities=28% Similarity=0.448 Sum_probs=39.8
Q ss_pred hhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy17136 57 MERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERA 106 (225)
Q Consensus 57 r~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERa 106 (225)
--.--|.-||.||-.| +..||+..|.-.++|.+||.-|=..++-.|.
T Consensus 9 ~~EknW~rEk~ELLdr---fd~ER~eWE~Q~kemq~kieql~~e~~~~r~ 55 (141)
T PF14818_consen 9 HSEKNWSREKMELLDR---FDRERQEWEQQWKEMQRKIEQLQKEVKPRRK 55 (141)
T ss_pred hcccchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcchhhc
Confidence 3445799999999765 7789999999999999999999888777775
No 37
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=46.51 E-value=43 Score=25.58 Aligned_cols=46 Identities=26% Similarity=0.379 Sum_probs=32.8
Q ss_pred cccchHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHH
Q psy17136 37 IQYSIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQ 103 (225)
Q Consensus 37 ~~YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkq 103 (225)
...|+...+.||. .||..|+...+.+..--..+..+|++++..+.+
T Consensus 71 vE~s~~eA~~~l~---------------------~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 71 VEMSLEEAIEFLK---------------------KRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp EEEEHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred EEecHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899998887 556666666666666667777777777777655
No 38
>KOG3119|consensus
Probab=46.14 E-value=43 Score=30.46 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQ 110 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~ 110 (225)
.||+.||++|+.|+ ..|.++|.+|...|..-|.-+..
T Consensus 218 ~e~~~r~~~leken-------~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 218 DEMAHRVAELEKEN-------EALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888877 67888899888777777655443
No 39
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=45.84 E-value=30 Score=33.31 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q psy17136 65 DKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQE 104 (225)
Q Consensus 65 ERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqE 104 (225)
|=+.|+.++|--|--.+.--.||..|..|+|-||.-||..
T Consensus 123 EmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk~~ 162 (351)
T PF07058_consen 123 EMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLKGS 162 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3344567777778888888899999999999999877754
No 40
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=45.38 E-value=1.2e+02 Score=23.79 Aligned_cols=72 Identities=21% Similarity=0.325 Sum_probs=50.9
Q ss_pred chHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 40 SIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 40 tlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
.+....+.|+.+-...+.++..=.-.-.|+-..|-.|..+.+.... ...+...|+.++..|+.+|.+..-++
T Consensus 7 ~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k 78 (106)
T PF05837_consen 7 NLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMK 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777766665555555566666666665555555 56788899999999999999987766
No 41
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.97 E-value=73 Score=24.86 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHH
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRIKMLEYALK 102 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALk 102 (225)
+.+..+|.+++...+.++.-...|...++-++..|+
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666665555555555555555554443
No 42
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=43.32 E-value=55 Score=30.67 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=43.7
Q ss_pred CCCcccchHHHHHHHHHHHHhhhhh--hccccccHHHHHHHHHHHhhhhhhhH-hHHHHHHHHHHHHHHHHHHHHHH
Q psy17136 34 GQRIQYSIPGILHFIQHEWARFEME--RSQWEVDKAELNARIAFLQGERKGQE-NLKHDLIRRIKMLEYALKQERAK 107 (225)
Q Consensus 34 ~~~~~YtlpGVL~fLQ~Ew~r~Er~--r~~WeiERaEm~arIa~LEGErk~qe-nlk~dL~RRIKMLE~ALkqERaK 107 (225)
+..++-.|.+-++|+...=.+.-.+ +..|+.-...|+++ .+.++ ..+..+..||+-|++||+=-.+-
T Consensus 141 a~~A~~lL~~YI~fv~~~v~~~l~~~i~~~i~~~~~~l~~~-------~~~~~~~ak~~~~~~I~rL~~AL~IA~aa 210 (325)
T PRK15471 141 AEGAQKKLAQYIQQVDDQVAKELEKDLKDNIALRTKTLQDS-------LETQEVVAQEQKDLRIKQIQEALQYANQA 210 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444667888899988766555444 33444444444444 44444 55677889999999999875543
No 43
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=43.27 E-value=63 Score=26.27 Aligned_cols=53 Identities=28% Similarity=0.453 Sum_probs=16.3
Q ss_pred HHHHHhhhhhhccccccHHHHHHHHHHHhhhhhh-h--HhHHHHHHHHHHHHHHHHH
Q psy17136 49 QHEWARFEMERSQWEVDKAELNARIAFLQGERKG-Q--ENLKHDLIRRIKMLEYALK 102 (225)
Q Consensus 49 Q~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~-q--enlk~dL~RRIKMLE~ALk 102 (225)
.++|+.+|.+|..|.-++......++.|+.-.+. + ++|-+... ...-|+-.||
T Consensus 41 e~~~~~LeqEr~Q~~q~~e~~~Rev~~L~~~L~~~~~~e~LE~~M~-kaqe~~e~Lr 96 (106)
T PF03528_consen 41 ETQWSLLEQERLQWQQYRESEEREVAKLQRRLREGQELENLEKSMK-KAQEDEEKLR 96 (106)
T ss_dssp ---------------------HHHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHH-HHHhHHHHHH
Confidence 8899999999999999988887778888765544 3 44433322 2333444443
No 44
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=42.36 E-value=45 Score=30.26 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHH
Q psy17136 66 KAELNARIAFLQGERKGQENLKHDLIRRIKML 97 (225)
Q Consensus 66 RaEm~arIa~LEGErk~qenlk~dL~RRIKML 97 (225)
|--++.|+++||.|++.+......|.+.|+-|
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L 119 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESL 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 45
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=41.49 E-value=60 Score=30.61 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=45.3
Q ss_pred CCCcccchHHHHHHHHHHHHhhhh--hhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy17136 34 GQRIQYSIPGILHFIQHEWARFEM--ERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAK 107 (225)
Q Consensus 34 ~~~~~YtlpGVL~fLQ~Ew~r~Er--~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK 107 (225)
+..++--|.+-++|....-...-. -...|+.-...|++++..++.. .+..+..||+-|++||+=-.+-
T Consensus 162 a~~A~~lL~~YI~fv~~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~------ak~~~~~~i~rl~~AL~IA~aa 231 (342)
T PRK11638 162 APDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEAV------AKAIYDREVNSVEQALKIAEQQ 231 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHc
Confidence 444467788999998876654433 3445655555666665555544 4577789999999999865543
No 46
>KOG2077|consensus
Probab=41.47 E-value=87 Score=32.84 Aligned_cols=65 Identities=23% Similarity=0.288 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhhhhccccccHHHHHHHHHHH-------hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17136 45 LHFIQHEWARFEMERSQWEVDKAELNARIAFL-------QGERKGQENLKHDLIRRIKMLEYALKQERAKYH 109 (225)
Q Consensus 45 L~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~L-------EGErk~qenlk~dL~RRIKMLE~ALkqERaK~~ 109 (225)
+.-|--|-+.+-.-+++-+|=|..|-+++.+| .||+.+.+..+-+|..+|+-||..||.-+++.-
T Consensus 303 VeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~ 374 (832)
T KOG2077|consen 303 VENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAE 374 (832)
T ss_pred HHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456678888889999999999999998774 678888899999999999999999998887754
No 47
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.94 E-value=2e+02 Score=25.40 Aligned_cols=73 Identities=10% Similarity=0.214 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 40 SIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 40 tlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
.+|.+=.=|+.==.++..-+..|+-+.++|+.+++.++.+...++.-+..|..-+..+...+...+++...++
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333333444556678999999999988888888887777778887777777766666566655443
No 48
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=40.68 E-value=18 Score=30.78 Aligned_cols=32 Identities=38% Similarity=0.608 Sum_probs=28.5
Q ss_pred hhhhhhccccccHHHHHHHHHHHhhhhhhhHh
Q psy17136 54 RFEMERSQWEVDKAELNARIAFLQGERKGQEN 85 (225)
Q Consensus 54 r~Er~r~~WeiERaEm~arIa~LEGErk~qen 85 (225)
+|-++|-+|+--..||+-||.+|.-|.+....
T Consensus 24 rfd~ER~eWE~Q~kemq~kieql~~e~~~~r~ 55 (141)
T PF14818_consen 24 RFDRERQEWEQQWKEMQRKIEQLQKEVKPRRK 55 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhc
Confidence 78899999999999999999999999876543
No 49
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=39.96 E-value=1.2e+02 Score=23.77 Aligned_cols=45 Identities=27% Similarity=0.245 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 66 KAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 66 RaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
..++++.|...+-++...+.-.+.|..|.|.|+..=+. ++.|.|-
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK--~RtHRLi 47 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERK--ERTHRLI 47 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 45788899999999988888888888899988873333 3344543
No 50
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=39.66 E-value=1.4e+02 Score=28.48 Aligned_cols=65 Identities=22% Similarity=0.284 Sum_probs=42.4
Q ss_pred CcccchHHHHHHHHHHHHhhhh--hhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy17136 36 RIQYSIPGILHFIQHEWARFEM--ERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERA 106 (225)
Q Consensus 36 ~~~YtlpGVL~fLQ~Ew~r~Er--~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERa 106 (225)
.++-.|.|-++|....-.+.-. -+..|+.-...++++|..++. .++..+..||+-|++||+=-.+
T Consensus 183 ~A~~lL~~YI~fv~~~~~~~l~~~i~~~~~~k~~~~~~~~~~~~~------~ak~~~~~~i~rl~~AL~IA~a 249 (377)
T PRK10381 183 EAQDVLSGYINYISTIVVKEVLENIRNKLEIKTQFEKEKLAMDRI------KLKNQLDANIQRLNYSLSIANA 249 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688888998765554333 334555556666666654443 4556678999999999986544
No 51
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=39.11 E-value=41 Score=24.71 Aligned_cols=19 Identities=42% Similarity=0.515 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhhhhhHh
Q psy17136 67 AELNARIAFLQGERKGQEN 85 (225)
Q Consensus 67 aEm~arIa~LEGErk~qen 85 (225)
.||..||+.|++|....+.
T Consensus 24 ~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEA 42 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5889999999999865443
No 52
>KOG3850|consensus
Probab=38.87 E-value=2.8e+02 Score=27.80 Aligned_cols=88 Identities=30% Similarity=0.486 Sum_probs=55.4
Q ss_pred cccccCCcccccCCccccccCCCCCCCCCCCcccchHHH-HHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhH
Q psy17136 6 DYRMDDNSSVNQNGQIGTNSNNNKSDDGGQRIQYSIPGI-LHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQE 84 (225)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YtlpGV-L~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qe 84 (225)
.|--+|-|+.---|-.++.-++..|.++++ .|-=+|. ++-|-+|-. |.+.--+.|+ +.-+
T Consensus 224 ~~gs~~E~~S~~~gSa~~~~n~~~g~~~~n--~~~s~~~~l~aileeL~--------------eIk~~q~~Le---esye 284 (455)
T KOG3850|consen 224 KYGSDDECSSSRPGSAADETNNVPGHGGAN--PYHSQGAALDAILEELR--------------EIKETQALLE---ESYE 284 (455)
T ss_pred CCCCCcccccCCCCccccccCCCCCCCCCC--cccccchHHHHHHHHHH--------------HHHHHHHHHH---HHHH
Confidence 455566665555555556666666655544 4555554 444443322 2333334444 3567
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 85 NLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 85 nlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
.||.++.|-++.+=.+|..||=+|-+|-
T Consensus 285 ~Lke~~krdy~fi~etLQEERyR~erLE 312 (455)
T KOG3850|consen 285 RLKEQIKRDYKFIAETLQEERYRYERLE 312 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999988775
No 53
>PRK10698 phage shock protein PspA; Provisional
Probab=37.54 E-value=1.1e+02 Score=27.02 Aligned_cols=48 Identities=27% Similarity=0.281 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 65 DKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 65 ERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
+|.....+|+.|+.+...++..-..|...|.-|+..|.+-|+|...|+
T Consensus 93 ~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 93 EKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567899999999999999999999999999999999888877665
No 54
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=36.93 E-value=1.1e+02 Score=21.00 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHH
Q psy17136 66 KAELNARIAFLQGERKGQENLKHDLIRRIKMLEY 99 (225)
Q Consensus 66 RaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ 99 (225)
|.-.+..+..|+.+...++.-+..|...|..|+.
T Consensus 20 R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 20 RQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455677888888888888888888888888873
No 55
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=35.96 E-value=12 Score=36.71 Aligned_cols=72 Identities=18% Similarity=0.294 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17136 39 YSIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLKY 113 (225)
Q Consensus 39 YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk~ 113 (225)
+-|--+|+|||.---.|.++=.+|--| .+.....|+-|++.-+..-.-|...|.-||..++..+.+++.++.
T Consensus 452 ~PLgk~~d~iqEDid~M~~El~~W~~e---~~~~~~~l~~e~~~t~~~~~pl~~~L~ele~~I~~~~~~i~~~ka 523 (539)
T PF10243_consen 452 NPLGKLMDYIQEDIDSMQKELEMWRSE---YRQHAEALQEEQSITDEALEPLKAQLAELEQQIKDQQDKICAVKA 523 (539)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667899999999988888888888555 455556688888888888899999999999999999999998774
No 56
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=35.69 E-value=1.4e+02 Score=22.12 Aligned_cols=36 Identities=33% Similarity=0.316 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHH
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRIKMLEYALK 102 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALk 102 (225)
..|..++..++.+.+.++.-.+.+..+++-++..|+
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777888877777777777777777665553
No 57
>KOG0161|consensus
Probab=34.98 E-value=1.3e+02 Score=35.00 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=51.0
Q ss_pred HHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy17136 48 IQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAK 107 (225)
Q Consensus 48 LQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK 107 (225)
|...-...|..+..|+.|+.+...+|.+|+++..+++.....|.+=-|+||.++++.-..
T Consensus 941 l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~ 1000 (1930)
T KOG0161|consen 941 LKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDD 1000 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556678888899999999999999999999999999999999999999988876433
No 58
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=34.95 E-value=1.6e+02 Score=26.97 Aligned_cols=59 Identities=24% Similarity=0.219 Sum_probs=39.7
Q ss_pred HHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q psy17136 50 HEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKY 108 (225)
Q Consensus 50 ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~ 108 (225)
.|+..++.+-..|.-....+...|+.|..++...+....+|..+|.-+|.-+-..++..
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~ 147 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARL 147 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666667777777777777777777777777777776666655543
No 59
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=34.05 E-value=1.4e+02 Score=26.19 Aligned_cols=46 Identities=30% Similarity=0.429 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhhhhhhHhHHH-------HHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 67 AELNARIAFLQGERKGQENLKH-------DLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~-------dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
..+..+|.+|+..++..+.--. .|-++|..||..|..++.+|..+.
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777666655544 455555566666777777777654
No 60
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=33.97 E-value=1.9e+02 Score=29.75 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17136 43 GILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYH 109 (225)
Q Consensus 43 GVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~ 109 (225)
..|.-||-|--.| --.+.-|++-++.||..|-.++..+..=+...++||.-||..|..-+.+..
T Consensus 4 e~l~qlq~Erd~y---a~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 4 ESLKQLQAERDQY---AQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566666554443 245677888899999999999999999999999999999999987665533
No 61
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.94 E-value=1.5e+02 Score=25.59 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17136 65 DKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYH 109 (225)
Q Consensus 65 ERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~ 109 (225)
+..+++.+++.|..++..+..-..+..++|..|-.+|...|....
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777776667777777777777766665544
No 62
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=33.70 E-value=1.9e+02 Score=21.06 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
+++.+|+.++...+..+.--..|-++...+|.+++.-..+..+++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888887777777777788888877777666655544
No 63
>KOG0804|consensus
Probab=33.37 E-value=1.7e+02 Score=29.56 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=17.4
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy17136 79 ERKGQENLKHDLIRRIKMLEYALKQERAKYHQL 111 (225)
Q Consensus 79 Erk~qenlk~dL~RRIKMLE~ALkqERaK~~~l 111 (225)
|.+.+++...|+..+-+.+|..+.|--.|.++.
T Consensus 362 e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~ 394 (493)
T KOG0804|consen 362 EADSLKQESSDLEAEKKIVERKLQQLQTKLKKC 394 (493)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555443
No 64
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=33.31 E-value=1.5e+02 Score=22.91 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy17136 87 KHDLIRRIKMLEYALKQERAKYH 109 (225)
Q Consensus 87 k~dL~RRIKMLE~ALkqERaK~~ 109 (225)
+..|.+||++||..|.+-+.-|.
T Consensus 9 n~~Lk~eiqkle~ELq~~~~~~q 31 (76)
T PF07334_consen 9 NARLKEEIQKLEAELQQNKREFQ 31 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 36789999999999988776654
No 65
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=33.11 E-value=2.2e+02 Score=21.76 Aligned_cols=61 Identities=20% Similarity=0.349 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q psy17136 41 IPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKY 108 (225)
Q Consensus 41 lpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~ 108 (225)
|..+|+.|..||..+-.+-+.+...+.++..+|..--.|.. .+...|--||.+=..-+.+|
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~-------~ir~~v~eLE~~h~kmK~~Y 62 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQ-------QIRQKVYELEQAHRKMKQQY 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999998888888888777666555553 33334444554444444443
No 66
>KOG0960|consensus
Probab=32.84 E-value=53 Score=32.81 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=28.0
Q ss_pred cchHHHHHHHHHHHHhhhhhhccccccHHHHHHHH
Q psy17136 39 YSIPGILHFIQHEWARFEMERSQWEVDKAELNARI 73 (225)
Q Consensus 39 YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arI 73 (225)
-.+.++|||++.||.++-.--..-|+|||.-+-|-
T Consensus 350 ~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt 384 (467)
T KOG0960|consen 350 TMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKT 384 (467)
T ss_pred hhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 46889999999999999877777778877655443
No 67
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=32.68 E-value=2.6e+02 Score=24.49 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=14.5
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17136 78 GERKGQENLKHDLIRRIKMLEYALKQERAKYH 109 (225)
Q Consensus 78 GErk~qenlk~dL~RRIKMLE~ALkqERaK~~ 109 (225)
..+++++..-...-.|...+|..++.-..+++
T Consensus 155 ~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lk 186 (237)
T PF00261_consen 155 NNLKSLEASEEKASEREDEYEEKIRDLEEKLK 186 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333333334444555555555554444443
No 68
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=32.59 E-value=2.9e+02 Score=27.06 Aligned_cols=23 Identities=22% Similarity=0.587 Sum_probs=17.0
Q ss_pred cccchh-HhhHHHHHHHHHhCCCc
Q psy17136 147 SNISWK-QGRQILRQYLQEIGYTD 169 (225)
Q Consensus 147 s~~~wk-qgRqLLrqYLqEIGytD 169 (225)
.+++|- .-|.+|-+|+..|+-.-
T Consensus 273 ~~LKWnn~~Rni~l~Y~~~v~~Rr 296 (475)
T PF10359_consen 273 MQLKWNNSLRNILLRYIHQVSQRR 296 (475)
T ss_pred cEEEEcchHHHHHHHHHHHHHHHH
Confidence 445775 46999999999876443
No 69
>PRK01156 chromosome segregation protein; Provisional
Probab=32.43 E-value=1.6e+02 Score=30.43 Aligned_cols=41 Identities=15% Similarity=-0.010 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHh
Q psy17136 45 LHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQEN 85 (225)
Q Consensus 45 L~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qen 85 (225)
+.|+..++.+++.+...+.-+..++...|+.|+|++...+.
T Consensus 669 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~ 709 (895)
T PRK01156 669 LKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRT 709 (895)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788888888888888888889999999999998887777
No 70
>KOG4603|consensus
Probab=32.41 E-value=2.2e+02 Score=25.68 Aligned_cols=67 Identities=19% Similarity=0.139 Sum_probs=48.9
Q ss_pred CcccchHHHHHHHHHHH-------------------------------HhhhhhhccccccHHHHHHHHHHHhhhhhhhH
Q psy17136 36 RIQYSIPGILHFIQHEW-------------------------------ARFEMERSQWEVDKAELNARIAFLQGERKGQE 84 (225)
Q Consensus 36 ~~~YtlpGVL~fLQ~Ew-------------------------------~r~Er~r~~WeiERaEm~arIa~LEGErk~qe 84 (225)
..+|+-+.|..+||.|. .+---+++...-|=+.|..+|+.|+....++.
T Consensus 20 NrP~ssq~v~~~lq~e~lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~ 99 (201)
T KOG4603|consen 20 NRPYSSQDVFGNLQREHLGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQVLDGKIVALTEKVQSLQ 99 (201)
T ss_pred cCCCchHHHHHHHHHHhccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHHHHhHHHHHHHHHHHHHH
Confidence 34689999999999988 11122445555677888889999988888888
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy17136 85 NLKHDLIRRIKMLEYALK 102 (225)
Q Consensus 85 nlk~dL~RRIKMLE~ALk 102 (225)
..-.+.-.-||-|-.||-
T Consensus 100 ~t~s~veaEik~L~s~Lt 117 (201)
T KOG4603|consen 100 QTCSYVEAEIKELSSALT 117 (201)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 777777777777766653
No 71
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=32.24 E-value=53 Score=27.79 Aligned_cols=38 Identities=16% Similarity=0.358 Sum_probs=33.7
Q ss_pred hhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Q psy17136 56 EMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRR 93 (225)
Q Consensus 56 Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RR 93 (225)
-.+...|-.-|.++-.+|..|+..++.++.+++-|.++
T Consensus 98 Y~d~~aWk~hr~~ID~eIe~Lq~Ki~~LKeiR~hLk~~ 135 (145)
T PF12548_consen 98 YQDPKAWKDHRLHIDHEIETLQDKIKNLKEIRGHLKKK 135 (145)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667899999999999999999999999999988764
No 72
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=32.12 E-value=28 Score=20.34 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=15.4
Q ss_pred HhhHHHHHHHHHhCCCccc
Q psy17136 153 QGRQILRQYLQEIGYTDTI 171 (225)
Q Consensus 153 qgRqLLrqYLqEIGytD~I 171 (225)
.-..++-+||.+.||.++.
T Consensus 5 ~l~~lI~~yL~~~g~~~ta 23 (34)
T smart00667 5 ELNRLILEYLLRNGYEETA 23 (34)
T ss_pred HHHHHHHHHHHHcCHHHHH
Confidence 3445788999999999876
No 73
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=31.85 E-value=1.1e+02 Score=24.95 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhhhhcccc--ccHHHHHHHHHHHhhhhhhhH
Q psy17136 42 PGILHFIQHEWARFEMERSQWE--VDKAELNARIAFLQGERKGQE 84 (225)
Q Consensus 42 pGVL~fLQ~Ew~r~Er~r~~We--iERaEm~arIa~LEGErk~qe 84 (225)
|.++=.|-+|+-+.+.....|+ .|-..+...+..|.-++...+
T Consensus 66 P~tvLALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae 110 (139)
T PF13935_consen 66 PATVLALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAE 110 (139)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888877776666666 335555555555555444333
No 74
>PHA02562 46 endonuclease subunit; Provisional
Probab=31.82 E-value=2.1e+02 Score=27.41 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHHHhhhhhhc---cccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q psy17136 40 SIPGILHFIQHEWARFEMERS---QWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQE 104 (225)
Q Consensus 40 tlpGVL~fLQ~Ew~r~Er~r~---~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqE 104 (225)
.|-.-+.+|+++...++.... .-.-+..++..+|..|+.+.+..+..-..++++++.|+..+..-
T Consensus 303 ~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l 370 (562)
T PHA02562 303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEEL 370 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777777777776555 33344556666666666666555555555555555555444433
No 75
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.79 E-value=3.1e+02 Score=22.67 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy17136 92 RRIKMLEYALKQERAKYH 109 (225)
Q Consensus 92 RRIKMLE~ALkqERaK~~ 109 (225)
.++.+++..+++.+..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~ 175 (191)
T PF04156_consen 158 EEVQELRSQLERLQENLQ 175 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555544443
No 76
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=30.58 E-value=44 Score=24.73 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=14.5
Q ss_pred cHHHHHHHHHHHhhhhh
Q psy17136 65 DKAELNARIAFLQGERK 81 (225)
Q Consensus 65 ERaEm~arIa~LEGErk 81 (225)
||.||++++-.||-|+.
T Consensus 11 ERNeLK~~v~~leEEL~ 27 (60)
T PF11461_consen 11 ERNELKARVFLLEEELA 27 (60)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78899999999888874
No 77
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.04 E-value=98 Score=24.35 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=17.5
Q ss_pred HHHHHHHhhhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17136 70 NARIAFLQGERKGQ--ENLKHDLIRRIKMLEYALKQERAKYH 109 (225)
Q Consensus 70 ~arIa~LEGErk~q--enlk~dL~RRIKMLE~ALkqERaK~~ 109 (225)
..|+..+|++.+.+ ..--.+|.-+|.-++--++.-+++..
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44555555555444 33333444444444444444444433
No 78
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=29.65 E-value=1.2e+02 Score=31.06 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=34.6
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q psy17136 70 NARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKY 108 (225)
Q Consensus 70 ~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~ 108 (225)
..+|..+=.+..+++..|+++.+||+-+|..|.+-|..-
T Consensus 369 e~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~~ 407 (557)
T PF01763_consen 369 EGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREEA 407 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 477888888888999999999999999999999988773
No 79
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=29.56 E-value=1.1e+02 Score=22.93 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHH
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRI 94 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRI 94 (225)
+.|+++++.+++|+..+-.-+..-..||
T Consensus 24 ~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 24 RLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333333
No 80
>PRK09039 hypothetical protein; Validated
Probab=29.38 E-value=1.2e+02 Score=28.41 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q psy17136 66 KAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQE 104 (225)
Q Consensus 66 RaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqE 104 (225)
=+.|+++|+.||.++...|.-.++...+|..|+..|..-
T Consensus 146 I~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 146 IAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678899999999999988899999998887766555
No 81
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=29.37 E-value=2.1e+02 Score=23.52 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
.....|+.|+.|.+..+.....-...|+.||...+.....+....
T Consensus 38 ~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~ 82 (160)
T PF13094_consen 38 ANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEE 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888888888888888888888887777666655544
No 82
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=29.27 E-value=1.1e+02 Score=28.98 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=27.4
Q ss_pred hhcccccc-HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q psy17136 58 ERSQWEVD-KAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQE 104 (225)
Q Consensus 58 ~r~~WeiE-RaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqE 104 (225)
.|-.||++ |.+|..+...|+.+++.+...+.....++.-|.-.|+.-
T Consensus 94 ~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l 141 (355)
T PF09766_consen 94 ARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSL 141 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34445543 666666666666666666666666666666666555543
No 83
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=28.51 E-value=3.3e+02 Score=22.34 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=41.1
Q ss_pred hhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy17136 58 ERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERA 106 (225)
Q Consensus 58 ~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERa 106 (225)
.+-.|.-+|-+|.+....|++++.....-..+|.+.|.-+...|--++-
T Consensus 31 S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ 79 (107)
T PF09304_consen 31 SQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQ 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999999888777766543
No 84
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=28.22 E-value=1.6e+02 Score=30.19 Aligned_cols=48 Identities=31% Similarity=0.457 Sum_probs=33.1
Q ss_pred hhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 58 ERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 58 ~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
.+..|.-||..++.-+.... .--.+|.+++.|+|..|+.||..-.+|.
T Consensus 351 ~~~q~~qEk~~l~~~~e~~k-------~~ie~L~~el~~~e~~lqEer~E~qkL~ 398 (546)
T PF07888_consen 351 GRSQWAQEKQALQHSAEADK-------DEIEKLSRELQMLEEHLQEERMERQKLE 398 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777776663222211 1226788999999999999998877765
No 85
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=27.91 E-value=1.1e+02 Score=24.65 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=22.8
Q ss_pred hhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHH
Q psy17136 55 FEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRI 94 (225)
Q Consensus 55 ~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRI 94 (225)
++.-+..|+.+|..|...|..++.-+..+..-|+-|--.|
T Consensus 89 l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 89 LEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666665555555555444443
No 86
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=27.90 E-value=28 Score=21.28 Aligned_cols=15 Identities=47% Similarity=0.849 Sum_probs=12.2
Q ss_pred HHHHHHHHHhCCCcc
Q psy17136 156 QILRQYLQEIGYTDT 170 (225)
Q Consensus 156 qLLrqYLqEIGytD~ 170 (225)
.|+-.||.+-||.++
T Consensus 5 ~lI~~YL~~~Gy~~t 19 (27)
T PF08513_consen 5 QLIYDYLVENGYKET 19 (27)
T ss_dssp HHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHCCcHHH
Confidence 578899999999876
No 87
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=26.02 E-value=1.1e+02 Score=32.27 Aligned_cols=44 Identities=25% Similarity=0.377 Sum_probs=40.4
Q ss_pred hccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHH
Q psy17136 59 RSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALK 102 (225)
Q Consensus 59 r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALk 102 (225)
.-.|+.||.+|...|-.|+-++.++-....-|.-|+.-|..-|.
T Consensus 237 ~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~ 280 (739)
T PF07111_consen 237 SQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILT 280 (739)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999999999988775
No 88
>KOG0977|consensus
Probab=25.85 E-value=2.1e+02 Score=29.30 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy17136 88 HDLIRRIKMLEYALKQERAKYHQ 110 (225)
Q Consensus 88 ~dL~RRIKMLE~ALkqERaK~~~ 110 (225)
.-+.+||+.||-.++.-++....
T Consensus 158 ~~~krr~~~le~e~~~Lk~en~r 180 (546)
T KOG0977|consen 158 NTLKRRIKALEDELKRLKAENSR 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 44567777777776665554443
No 89
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=25.81 E-value=1.4e+02 Score=21.91 Aligned_cols=39 Identities=10% Similarity=0.302 Sum_probs=24.3
Q ss_pred ccchHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHH
Q psy17136 38 QYSIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFL 76 (225)
Q Consensus 38 ~YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~L 76 (225)
...|..+..||...+.........-.++++-.++....+
T Consensus 23 ~~~l~~l~~fl~~~l~~~~~~~~~~~i~~~l~~~~~~~~ 61 (109)
T PF10367_consen 23 DWPLSDLSDFLCKSLRKYSNRKRESQIEKNLLKSENLQL 61 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 478888889998888776655544444444444333333
No 90
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=25.56 E-value=2.4e+02 Score=19.74 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHH
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEY 99 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~ 99 (225)
+|..++..|+.+...+..-...|...+..|..
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666666655543
No 91
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.03 E-value=2e+02 Score=21.98 Aligned_cols=46 Identities=22% Similarity=0.332 Sum_probs=30.7
Q ss_pred cccchHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHH
Q psy17136 37 IQYSIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQ 103 (225)
Q Consensus 37 ~~YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkq 103 (225)
..++++.++.||. .||..|+.+....+..-.++...+.+|+..|.+
T Consensus 81 ve~~~~eA~~~l~---------------------~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 81 VEKSLEEAIEFLK---------------------KRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred EEecHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888876665 556666666666666666777777777766654
No 92
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=24.89 E-value=3.7e+02 Score=21.67 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17136 40 SIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYH 109 (225)
Q Consensus 40 tlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~ 109 (225)
.+=.||+.|-..-.+.=..+..+.-.-..+.+-|..|+.....++.-...+.|.+..++...++-..++.
T Consensus 35 ~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 35 RVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444444444444444444555555555555555555455555555544444444444433
No 93
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=24.81 E-value=1.8e+02 Score=22.54 Aligned_cols=21 Identities=43% Similarity=0.561 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhhhhhHhH
Q psy17136 66 KAELNARIAFLQGERKGQENL 86 (225)
Q Consensus 66 RaEm~arIa~LEGErk~qenl 86 (225)
++|+++|+-.|+.+...+||+
T Consensus 17 iae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 17 IAELQARLKELEAQKTEAENL 37 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555553
No 94
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.68 E-value=2.6e+02 Score=23.05 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhhhhhHh--HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17136 67 AELNARIAFLQGERKGQEN--LKHDLIRRIKMLEYALKQERAKYHQLKY 113 (225)
Q Consensus 67 aEm~arIa~LEGErk~qen--lk~dL~RRIKMLE~ALkqERaK~~~lk~ 113 (225)
.+++..+..|+.|++.+.. ...+|...|..|+.-+.+-.++...+..
T Consensus 89 ~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 89 AELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444433 3467888999999999999999888774
No 95
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.49 E-value=2e+02 Score=25.16 Aligned_cols=42 Identities=12% Similarity=0.332 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q psy17136 63 EVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQE 104 (225)
Q Consensus 63 eiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqE 104 (225)
=.||.++..++..++......+.-...|.+.+.+...+.+++
T Consensus 117 L~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rq 158 (194)
T PF15619_consen 117 LAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQ 158 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 356888888888888888888888888888777777666554
No 96
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.81 E-value=2.6e+02 Score=23.13 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
++.++|..|+-+....+.=-.+|.+++..||--|-+-..+....+
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777777777666666554
No 97
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=23.62 E-value=1.7e+02 Score=25.51 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=28.2
Q ss_pred ccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHH
Q psy17136 60 SQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEY 99 (225)
Q Consensus 60 ~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ 99 (225)
..-+-||.||+..++++|.|+..+.+.--.-.||.--|-.
T Consensus 25 ~LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKr 64 (162)
T PF04201_consen 25 GLSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKR 64 (162)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456788999999999999998777765444455444443
No 98
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=23.20 E-value=2.4e+02 Score=22.91 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=29.6
Q ss_pred HHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHH
Q psy17136 71 ARIAFLQGERKGQENLKHDLIRRIKMLEYALKQ 103 (225)
Q Consensus 71 arIa~LEGErk~qenlk~dL~RRIKMLE~ALkq 103 (225)
+.|..++.|..++.+-|..|.+||.-|-+.|..
T Consensus 40 ~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 40 QALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999888873
No 99
>KOG3634|consensus
Probab=23.18 E-value=2e+02 Score=28.09 Aligned_cols=43 Identities=28% Similarity=0.299 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy17136 65 DKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAK 107 (225)
Q Consensus 65 ERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK 107 (225)
--++|+++|-.|-.-+=.+|.=|.||-.|-+-=||-|+..+.+
T Consensus 231 ~e~~LkeKiKELhqrI~kLE~EKyDLekR~eRQeYDlkeL~eR 273 (361)
T KOG3634|consen 231 PENDLKEKIKELHQRICKLETEKYDLEKRHERQEYDLKELNER 273 (361)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhccHHHHHHH
Confidence 3466666666666666666666799999999999999887543
No 100
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.15 E-value=2.6e+02 Score=23.23 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHH
Q psy17136 66 KAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQ 103 (225)
Q Consensus 66 RaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkq 103 (225)
..+|..|+-+||-..+.++.--+++..|++-|.-+|..
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777766666544
No 101
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=22.79 E-value=2.7e+02 Score=22.54 Aligned_cols=46 Identities=24% Similarity=0.495 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHH
Q psy17136 42 PGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIK 95 (225)
Q Consensus 42 pGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIK 95 (225)
|.+|.|++ ..|..|..|+ -|+-++++...-|.+++.|+.+...+++
T Consensus 46 ~~LL~~i~----~~ee~R~~~E----~lQdkL~qi~eAR~AlDalR~eH~~klr 91 (96)
T PF12210_consen 46 PQLLKYIQ----EQEEKRVYYE----GLQDKLAQIKEARAALDALREEHREKLR 91 (96)
T ss_dssp HHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777 5666666665 4788888888888888888888877665
No 102
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=22.42 E-value=2.5e+02 Score=21.71 Aligned_cols=34 Identities=21% Similarity=0.110 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHH
Q psy17136 69 LNARIAFLQGERKGQENLKHDLIRRIKMLEYALK 102 (225)
Q Consensus 69 m~arIa~LEGErk~qenlk~dL~RRIKMLE~ALk 102 (225)
.-.+|..++.+...+|.+-..|=.+++.||-.+|
T Consensus 64 ~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 64 YLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467888888999999999999999999997665
No 103
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.25 E-value=2.2e+02 Score=24.20 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQE 104 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqE 104 (225)
.++.++|..|+.|...++..-+++++.++-.+..|..-
T Consensus 25 q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 25 QENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999998899998888777766543
No 104
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=21.64 E-value=3.1e+02 Score=23.78 Aligned_cols=46 Identities=22% Similarity=0.204 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy17136 65 DKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQ 110 (225)
Q Consensus 65 ERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~ 110 (225)
++.+....+..|+.+...++..-..|..+|.-||..|..-+++-..
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~ 138 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKA 138 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666678888888888888888899999999998888887777553
No 105
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=21.53 E-value=90 Score=23.58 Aligned_cols=17 Identities=53% Similarity=0.608 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhhhhhh
Q psy17136 67 AELNARIAFLQGERKGQ 83 (225)
Q Consensus 67 aEm~arIa~LEGErk~q 83 (225)
+|+..||+.|+.|...+
T Consensus 28 ~El~eRIalLq~EIeRl 44 (65)
T COG5509 28 AELEERIALLQAEIERL 44 (65)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57788888888887543
No 106
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.51 E-value=3.3e+02 Score=19.87 Aligned_cols=42 Identities=12% Similarity=0.219 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKY 108 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~ 108 (225)
.|+..++..+++...+++.-+.++..-|.+|+.-+|.-=+=|
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888888899999999988776554433
No 107
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.29 E-value=2.6e+02 Score=21.89 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=29.6
Q ss_pred CcccchHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHH
Q psy17136 36 RIQYSIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQ 103 (225)
Q Consensus 36 ~~~YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkq 103 (225)
...++++.++.||. .||..|+...+..+.--..+...|.+++..+.+
T Consensus 80 ~vE~~~~eA~~~l~---------------------~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 80 YVEKDLEEAIEFLD---------------------KKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred EEEecHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999998877 344445555554455556666777777765543
No 108
>KOG0250|consensus
Probab=21.26 E-value=7.2e+02 Score=27.75 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=14.7
Q ss_pred CcccchHHHHHHHHHHHHhhhh
Q psy17136 36 RIQYSIPGILHFIQHEWARFEM 57 (225)
Q Consensus 36 ~~~YtlpGVL~fLQ~Ew~r~Er 57 (225)
.-..++..-+.+|+.|-.+.+.
T Consensus 654 ~~~~s~d~~ie~le~e~~~l~~ 675 (1074)
T KOG0250|consen 654 VDEFSFDDEIEDLEREASRLQK 675 (1074)
T ss_pred ccchhHhHHHHHHHHHHHHHHH
Confidence 4456777777777776665554
No 109
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=21.22 E-value=3.7e+02 Score=20.34 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=56.3
Q ss_pred cchHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhh---hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 39 YSIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQG---ERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 39 YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEG---Erk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
..+..|+. |-.+|..+-..-....-+|.++...|+.+-. ++..+..--+.+...|+-||..++.--.+.+.+-
T Consensus 26 ~~vd~i~~-ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 26 EDVDEIIE-LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 5668988888888888899999999998887 4666666667888899999998888777776654
No 110
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=21.22 E-value=2.7e+02 Score=22.57 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=29.1
Q ss_pred ccchHHHHHHHHHHHHhhhhhhccccc--cHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHH
Q psy17136 38 QYSIPGILHFIQHEWARFEMERSQWEV--DKAELNARIAFLQGERKGQENLKHDLIRRIKML 97 (225)
Q Consensus 38 ~YtlpGVL~fLQ~Ew~r~Er~r~~Wei--ERaEm~arIa~LEGErk~qenlk~dL~RRIKML 97 (225)
.|+|..|-.+|...- ..+.. =++-++.+++.++.+.+.+..++..|..-|..+
T Consensus 57 GfsL~eI~~ll~~~~-------~~~~~~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~ 111 (131)
T cd04786 57 GFSLDEIRQLLPADA-------SNWQHDELLAALERKVADIEALEARLAQNKAQLLVLIDLI 111 (131)
T ss_pred CCCHHHHHHHHhccc-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777775311 11111 134556777777777766666665555444444
No 111
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=21.13 E-value=3.9e+02 Score=20.55 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy17136 64 VDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQ 110 (225)
Q Consensus 64 iERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~ 110 (225)
.+-.-|..+|..|+.|....++-..++.|-.+.|...++.-+..+.+
T Consensus 24 ~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 24 KELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34456678999999999999999999999999988888777766554
No 112
>KOG0161|consensus
Probab=20.94 E-value=2.9e+02 Score=32.45 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=50.9
Q ss_pred HHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 48 IQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 48 LQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
+..+-..+++.-..=+.|...|++++..++++...+....++|.+||+-|+--|..||+.-.++.
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~e 1124 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAE 1124 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455567788899999999999999999999999999999999988877655543
No 113
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.64 E-value=1.6e+02 Score=28.59 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhh
Q psy17136 41 IPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGER 80 (225)
Q Consensus 41 lpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGEr 80 (225)
.+.-+.=|+.+...++.....=.-+++-++++|++|++-.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555655665555555555555666666665544
No 114
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.58 E-value=3.6e+02 Score=25.85 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=48.4
Q ss_pred CCCcccchHHHH-HHHHHHHHhhhhhhccccccHHHHHHHHHHHhh-------------hhhhhHhHHHHHHHHHHHHHH
Q psy17136 34 GQRIQYSIPGIL-HFIQHEWARFEMERSQWEVDKAELNARIAFLQG-------------ERKGQENLKHDLIRRIKMLEY 99 (225)
Q Consensus 34 ~~~~~YtlpGVL-~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEG-------------Erk~qenlk~dL~RRIKMLE~ 99 (225)
...+...+ |+= ..|..++..++.......-+-.+++..|..|+. ..+........|..+++.|+.
T Consensus 318 ~~~T~i~v-g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 396 (451)
T PF03961_consen 318 GTKTEIEV-GVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKE 396 (451)
T ss_pred cccEEEEE-ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566 776 888889999998888888888888888777765 223333444455555555555
Q ss_pred HHHHHHHHhhh
Q psy17136 100 ALKQERAKYHQ 110 (225)
Q Consensus 100 ALkqERaK~~~ 110 (225)
.+.+.......
T Consensus 397 ~~~~l~~~l~~ 407 (451)
T PF03961_consen 397 ELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHh
Confidence 55544444443
No 115
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.41 E-value=2.4e+02 Score=26.74 Aligned_cols=37 Identities=35% Similarity=0.384 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQE 104 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqE 104 (225)
++..+|..||......+..-.++.++|+.|+..|...
T Consensus 148 e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 148 ELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666777888888888777753
No 116
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.30 E-value=5.7e+02 Score=24.69 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhh---hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 40 SIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGER---KGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 40 tlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGEr---k~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
.+..|+. |-.+|..+...-....-||.++..+|+.+.... ..+..--+.|..+|+-||..++.-.+++..+-
T Consensus 26 ~vd~i~~-ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 26 DVDELLE-LDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544 667899988888888888988888888743332 22323336677888888888887777766554
No 117
>KOG0850|consensus
Probab=20.20 E-value=1.2e+02 Score=28.22 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=41.5
Q ss_pred HHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhccc-CCcCCC
Q psy17136 48 IQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLKY-GTELQQ 119 (225)
Q Consensus 48 LQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk~-g~~~~q 119 (225)
||.--+||+...-----|||||-|.|-.-|-++|=. ....|.||++++. |.....
T Consensus 134 LqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIW-----------------FQNrRSK~KKl~k~g~~~~e 189 (245)
T KOG0850|consen 134 LQALNRRFQQTQYLALPERAELAASLGLTQTQVKIW-----------------FQNRRSKFKKLKKQGSGPVE 189 (245)
T ss_pred HHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhh-----------------hhhhHHHHHHHHhcCCCccc
Confidence 666678999888888999999999998877776522 3456788888886 555443
No 118
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=20.11 E-value=4.1e+02 Score=21.83 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=35.7
Q ss_pred hhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy17136 58 ERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQL 111 (225)
Q Consensus 58 ~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~l 111 (225)
+|..-+--+.+++.+.+-|++++.+.+--..-|++-=+-|+.++.+-++.....
T Consensus 3 e~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~ 56 (107)
T PF09304_consen 3 EKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASR 56 (107)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344555668899999999999998888888888888888988888877765443
No 119
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.09 E-value=2.4e+02 Score=24.59 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17136 87 KHDLIRRIKMLEYALKQE 104 (225)
Q Consensus 87 k~dL~RRIKMLE~ALkqE 104 (225)
...|..+++-||..+...
T Consensus 113 ~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 113 NESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555666665555444
Done!