Query psy17136
Match_columns 225
No_of_seqs 116 out of 139
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 22:48:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3efg_A Protein SLYX homolog; x 72.8 8.3 0.00028 28.2 5.7 46 67-112 17-62 (78)
2 1t2k_D Cyclic-AMP-dependent tr 71.8 11 0.00039 25.7 5.9 40 68-107 19-58 (61)
3 3he4_B Synzip5; heterodimeric 71.4 9.3 0.00032 25.7 5.2 36 67-102 6-41 (46)
4 1jnm_A Proto-oncogene C-JUN; B 66.2 9.7 0.00033 26.2 4.6 35 70-104 21-55 (62)
5 1ci6_A Transcription factor AT 65.2 22 0.00074 24.7 6.3 40 67-106 19-58 (63)
6 3b8m_A Ferric enterobactin (en 61.5 19 0.00065 31.4 6.7 63 38-107 134-199 (280)
7 3s9g_A Protein hexim1; cyclin 61.3 22 0.00077 27.8 6.3 68 46-113 9-86 (104)
8 3he5_A Synzip1; heterodimeric 60.6 36 0.0012 23.0 6.5 41 68-108 7-47 (49)
9 2wt7_A Proto-oncogene protein 60.3 27 0.00091 24.1 6.0 36 70-105 22-57 (63)
10 3swf_A CGMP-gated cation chann 57.1 21 0.00073 26.4 5.3 38 69-109 19-56 (74)
11 4ath_A MITF, microphthalmia-as 55.7 20 0.00067 27.0 5.0 31 71-101 49-79 (83)
12 3b8o_A Lipopolysaccharide bios 55.5 18 0.00061 31.2 5.4 64 37-105 118-182 (265)
13 2akf_A Coronin-1A; coiled coil 55.1 11 0.00037 23.8 2.9 30 73-102 1-30 (32)
14 1c1g_A Tropomyosin; contractIl 50.8 77 0.0026 24.3 8.0 7 48-54 11-17 (284)
15 3mq7_A Bone marrow stromal ant 47.9 72 0.0025 25.6 7.4 66 40-112 22-105 (121)
16 2v66_B Nuclear distribution pr 46.7 48 0.0016 26.0 6.1 66 46-111 6-79 (111)
17 1go4_E MAD1 (mitotic arrest de 45.9 26 0.0009 27.1 4.4 28 67-101 15-42 (100)
18 1nkp_A C-MYC, MYC proto-oncoge 45.0 15 0.00052 27.0 2.9 10 40-49 46-55 (88)
19 2dgc_A Protein (GCN4); basic d 44.7 25 0.00087 24.5 3.9 32 70-101 29-60 (63)
20 3viq_B Mating-type switching p 44.4 41 0.0014 25.4 5.2 40 65-112 2-54 (85)
21 3tnu_A Keratin, type I cytoske 43.9 48 0.0017 25.6 5.8 35 65-99 39-73 (131)
22 3gp4_A Transcriptional regulat 43.5 1.1E+02 0.0038 23.7 7.9 42 66-107 83-124 (142)
23 2zvf_A Alanyl-tRNA synthetase; 43.0 34 0.0011 26.7 4.8 45 43-87 4-48 (171)
24 1joc_A EEA1, early endosomal a 42.8 69 0.0024 24.7 6.5 40 65-104 5-44 (125)
25 3ghg_A Fibrinogen alpha chain; 42.6 34 0.0012 33.5 5.6 38 68-112 114-151 (562)
26 2oqq_A Transcription factor HY 42.6 62 0.0021 21.7 5.2 36 70-105 2-37 (42)
27 3tnu_B Keratin, type II cytosk 42.2 74 0.0025 24.4 6.6 34 65-98 37-70 (129)
28 2v71_A Nuclear distribution pr 41.5 38 0.0013 28.7 5.1 39 74-112 45-83 (189)
29 3gpv_A Transcriptional regulat 40.8 57 0.0019 25.4 5.8 31 68-98 99-129 (148)
30 3nmd_A CGMP dependent protein 39.5 1.1E+02 0.0038 22.4 6.8 45 69-113 24-68 (72)
31 1hjb_A Ccaat/enhancer binding 39.2 1E+02 0.0034 23.0 6.6 42 70-111 35-76 (87)
32 2xv5_A Lamin-A/C; structural p 39.1 98 0.0033 22.3 6.4 52 63-117 4-61 (74)
33 1deq_A Fibrinogen (alpha chain 38.7 64 0.0022 30.3 6.6 37 65-101 114-157 (390)
34 1nkp_B MAX protein, MYC proto- 38.4 17 0.00059 25.9 2.2 25 74-98 50-74 (83)
35 3o0z_A RHO-associated protein 37.8 1.2E+02 0.004 25.4 7.5 63 48-110 74-154 (168)
36 2w83_C C-JUN-amino-terminal ki 37.4 27 0.00092 26.1 3.2 58 46-103 12-76 (77)
37 3swy_A Cyclic nucleotide-gated 35.9 51 0.0017 22.2 4.1 28 69-99 17-44 (46)
38 1gu4_A CAAT/enhancer binding p 35.1 83 0.0028 23.0 5.5 38 70-107 35-72 (78)
39 2p4v_A Transcription elongatio 33.0 1.8E+02 0.0062 23.1 7.7 54 42-101 8-69 (158)
40 4e29_A Chimeric WZZB chain len 32.5 73 0.0025 27.8 5.7 64 37-107 99-165 (248)
41 4etp_A Kinesin-like protein KA 31.8 51 0.0017 30.1 4.8 39 66-104 5-43 (403)
42 4fm3_A Uncharacterized hypothe 31.7 88 0.003 24.0 5.4 63 37-101 25-94 (98)
43 3na7_A HP0958; flagellar bioge 31.3 1.7E+02 0.006 24.5 7.7 59 54-112 22-80 (256)
44 2q2k_A Hypothetical protein; p 30.6 21 0.00073 25.7 1.6 16 152-167 53-68 (70)
45 1fxk_C Protein (prefoldin); ar 30.4 1.1E+02 0.0038 23.0 5.8 48 37-105 82-129 (133)
46 3kqg_A Langerin, C-type lectin 30.0 61 0.0021 24.8 4.3 40 68-107 3-45 (182)
47 1a93_B MAX protein, coiled coi 29.9 62 0.0021 20.8 3.5 29 69-97 5-33 (34)
48 4etp_A Kinesin-like protein KA 28.8 98 0.0034 28.2 6.1 21 150-172 125-145 (403)
49 1ci6_A Transcription factor AT 28.8 71 0.0024 22.1 4.0 24 63-86 36-59 (63)
50 2f23_A Anti-cleavage anti-GREA 27.5 1.2E+02 0.0041 23.9 5.7 42 62-103 22-71 (156)
51 3oja_B Anopheles plasmodium-re 27.1 2.6E+02 0.0088 25.4 8.5 18 92-109 544-561 (597)
52 1tu3_F RAB GTPase binding effe 27.0 80 0.0027 23.6 4.2 41 65-105 13-53 (79)
53 3thf_A Protein shroom; coiled- 26.7 1.3E+02 0.0044 25.7 6.0 53 43-95 77-132 (190)
54 2v71_A Nuclear distribution pr 26.7 1.3E+02 0.0046 25.3 6.1 30 71-100 88-117 (189)
55 2zqm_A Prefoldin beta subunit 26.5 1.5E+02 0.0053 21.4 5.8 34 68-101 74-107 (117)
56 1gd2_E Transcription factor PA 26.2 74 0.0025 22.8 3.9 33 69-101 34-66 (70)
57 1wle_A Seryl-tRNA synthetase; 25.2 3E+02 0.01 26.0 8.9 66 48-113 75-151 (501)
58 1dh3_A Transcription factor CR 25.1 1.3E+02 0.0045 20.2 4.8 33 66-98 17-49 (55)
59 2xdj_A Uncharacterized protein 25.0 1.7E+02 0.0059 21.4 5.8 42 67-111 23-64 (83)
60 3uux_B Mitochondrial division 24.5 1.2E+02 0.0041 26.8 5.6 53 46-98 152-204 (242)
61 2b9c_A Striated-muscle alpha t 24.1 1.3E+02 0.0045 24.1 5.4 48 55-102 34-90 (147)
62 1zme_C Proline utilization tra 24.0 75 0.0026 21.0 3.4 20 88-107 47-66 (70)
63 2zdi_C Prefoldin subunit alpha 23.6 1.4E+02 0.0047 23.2 5.3 50 37-107 92-141 (151)
64 3v86_A De novo design helix; c 23.4 93 0.0032 18.8 3.3 23 68-90 4-26 (27)
65 3u06_A Protein claret segregat 23.4 1.7E+02 0.0058 26.8 6.7 46 65-110 4-52 (412)
66 3mud_A DNA repair protein XRCC 23.3 1.5E+02 0.0051 24.9 5.8 41 65-112 121-162 (175)
67 3u06_A Protein claret segregat 23.3 94 0.0032 28.6 4.9 20 151-172 124-143 (412)
68 1fxk_A Prefoldin; archaeal pro 23.0 1.6E+02 0.0056 21.0 5.3 34 68-101 69-102 (107)
69 1nkp_B MAX protein, MYC proto- 22.8 1E+02 0.0036 21.7 4.1 10 40-49 41-50 (83)
70 2yko_A LINE-1 ORF1P; RNA-bindi 22.6 1.4E+02 0.0049 26.0 5.7 42 68-109 10-51 (233)
71 1j1d_B Troponin T, TNT; THIN f 21.9 2.7E+02 0.0093 21.4 6.6 45 67-111 45-89 (106)
72 3tnu_B Keratin, type II cytosk 21.3 2.5E+02 0.0087 21.3 6.4 17 89-105 79-95 (129)
73 2xdj_A Uncharacterized protein 20.9 2.3E+02 0.008 20.7 5.8 38 60-97 21-60 (83)
74 3f1i_H Hepatocyte growth facto 20.4 2E+02 0.0069 22.2 5.5 44 42-93 48-91 (98)
75 2dq0_A Seryl-tRNA synthetase; 20.3 4E+02 0.014 24.6 8.5 68 46-113 34-104 (455)
76 2kw3_C Regulatory factor X-ass 20.2 45 0.0016 23.9 1.7 17 39-55 29-45 (62)
No 1
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=72.80 E-value=8.3 Score=28.23 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
.+|..||||+|.-+..+...-..+.+-|..|...|+.-+.|...+.
T Consensus 17 ~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 17 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567888888888887777777888888999988888887766554
No 2
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=71.81 E-value=11 Score=25.72 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAK 107 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK 107 (225)
-=+.+|..||.+...++.-+.+|...|.+|+..+.+-+..
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357799999999999999999999999999887766543
No 3
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=71.36 E-value=9.3 Score=25.67 Aligned_cols=36 Identities=31% Similarity=0.293 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHH
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRIKMLEYALK 102 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALk 102 (225)
.|++.-|..||.....++||+..|.---.-|||.|-
T Consensus 6 kelknyiqeleernaelknlkehlkfakaelefela 41 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKEHLKFAKAELEFELA 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHH
Confidence 478888999998888999999998887788888774
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=66.15 E-value=9.7 Score=26.20 Aligned_cols=35 Identities=26% Similarity=0.211 Sum_probs=30.1
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q psy17136 70 NARIAFLQGERKGQENLKHDLIRRIKMLEYALKQE 104 (225)
Q Consensus 70 ~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqE 104 (225)
+.+|..||++...++.-+..|...|.+|+..+.+-
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999999999999999999999998766543
No 5
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=65.23 E-value=22 Score=24.73 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERA 106 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERa 106 (225)
.--+.++..|+.+.+.++.-+..|..+|.-|+..+..-+.
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346778899999999999999999999999877766543
No 6
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=61.53 E-value=19 Score=31.41 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHHHHHhhhhh--hccccccHHHHHHHHHHHhhhhhhhH-hHHHHHHHHHHHHHHHHHHHHHH
Q psy17136 38 QYSIPGILHFIQHEWARFEME--RSQWEVDKAELNARIAFLQGERKGQE-NLKHDLIRRIKMLEYALKQERAK 107 (225)
Q Consensus 38 ~YtlpGVL~fLQ~Ew~r~Er~--r~~WeiERaEm~arIa~LEGErk~qe-nlk~dL~RRIKMLE~ALkqERaK 107 (225)
+-.|.|-|+|....-...-.+ +..|. .|...|+.+.+.++ ..+..+.+||.-|++||+=-.+-
T Consensus 134 ~~lL~~YI~fv~~~~~~~l~~~l~~~i~-------~r~~~l~~qi~~~~~~ak~~~~~~I~rL~~AL~IA~aa 199 (280)
T 3b8m_A 134 QTVLSGYIDYISALVVKESIENVRNKLE-------IKTQFEKEKLAQDRIKMKNQLDANIQRLNYSLDIANAA 199 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456788888887665544433 33344 46666666666666 67788899999999999876554
No 7
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=61.26 E-value=22 Score=27.83 Aligned_cols=68 Identities=24% Similarity=0.343 Sum_probs=46.6
Q ss_pred HHHHHHHHh-hhhhhcc--ccccHHHH-------HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17136 46 HFIQHEWAR-FEMERSQ--WEVDKAEL-------NARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLKY 113 (225)
Q Consensus 46 ~fLQ~Ew~r-~Er~r~~--WeiERaEm-------~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk~ 113 (225)
.||+.+|+. +|+.+.+ -.+-|.|| ..+...||.|.+.+.++.+....||.-||..|.+-|+.+..|..
T Consensus 9 eFl~KdFSe~YE~~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 9 EFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp -----CCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 477777764 3333322 22334444 57778888888888999999999999999999999999888764
No 8
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=60.58 E-value=36 Score=23.04 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKY 108 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~ 108 (225)
.+...+|.||.|...++.-+-.-.--|.-||..+-.-|.|.
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 34445555555554444322222233778898888888775
No 9
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=60.28 E-value=27 Score=24.12 Aligned_cols=36 Identities=22% Similarity=0.097 Sum_probs=30.1
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q psy17136 70 NARIAFLQGERKGQENLKHDLIRRIKMLEYALKQER 105 (225)
Q Consensus 70 ~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqER 105 (225)
+..|..|+.+...++.-+..|...|..|...+.+-+
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999988876665544
No 10
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=57.11 E-value=21 Score=26.37 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17136 69 LNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYH 109 (225)
Q Consensus 69 m~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~ 109 (225)
|+.|.|.|-+|-. ..+..|..||..||.-++..+....
T Consensus 19 LQTrfARLLaEy~---ssQ~KLKqRit~LE~~~~~~~~~~~ 56 (74)
T 3swf_A 19 LQTRFARILAEYE---SMQQKLKQRLTKVEKFLKPLIDTEF 56 (74)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccCCCch
Confidence 6778888877764 5668999999999999988766543
No 11
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=55.71 E-value=20 Score=26.99 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=27.4
Q ss_pred HHHHHHhhhhhhhHhHHHHHHHHHHHHHHHH
Q psy17136 71 ARIAFLQGERKGQENLKHDLIRRIKMLEYAL 101 (225)
Q Consensus 71 arIa~LEGErk~qenlk~dL~RRIKMLE~AL 101 (225)
++...++...+.++..++.|..||.-||...
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 6777889999999999999999999999654
No 12
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial polysaccharide CO-polymerase, inner MEM lipopolysaccharide biosynthesis, membrane; 2.40A {Escherichia coli} SCOP: d.58.60.1
Probab=55.45 E-value=18 Score=31.17 Aligned_cols=64 Identities=22% Similarity=0.149 Sum_probs=38.1
Q ss_pred cccchHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhH-hHHHHHHHHHHHHHHHHHHHH
Q psy17136 37 IQYSIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQE-NLKHDLIRRIKMLEYALKQER 105 (225)
Q Consensus 37 ~~YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qe-nlk~dL~RRIKMLE~ALkqER 105 (225)
++-.|.|-|+|....-...-.+...- .+..|...|+.+.+.++ ..+..+.+||.-|++||+=-.
T Consensus 118 A~~lL~~YI~~v~~~~~~~l~~~l~~-----~~~~r~~~l~~qi~~~~~~ak~~~~~~i~rl~~AL~IA~ 182 (265)
T 3b8o_A 118 ANNLLRQYVAFASQRAASHLNDELKG-----AWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALKIAE 182 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888876555444332221 12245556777777776 677889999999999997643
No 13
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=55.11 E-value=11 Score=23.84 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=25.3
Q ss_pred HHHHhhhhhhhHhHHHHHHHHHHHHHHHHH
Q psy17136 73 IAFLQGERKGQENLKHDLIRRIKMLEYALK 102 (225)
Q Consensus 73 Ia~LEGErk~qenlk~dL~RRIKMLE~ALk 102 (225)
|..||.+.+.+..+-..|..|+.-||..+.
T Consensus 1 isrlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346889999999999999999999997653
No 14
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=50.76 E-value=77 Score=24.33 Aligned_cols=7 Identities=0% Similarity=0.093 Sum_probs=2.6
Q ss_pred HHHHHHh
Q psy17136 48 IQHEWAR 54 (225)
Q Consensus 48 LQ~Ew~r 54 (225)
|.++|..
T Consensus 11 l~~~~~~ 17 (284)
T 1c1g_A 11 LKLDKEN 17 (284)
T ss_dssp HHHHHHH
T ss_pred HHHhHHH
Confidence 3333333
No 15
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=47.94 E-value=72 Score=25.57 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHHHhhhhh------------------hccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHH
Q psy17136 40 SIPGILHFIQHEWARFEME------------------RSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYAL 101 (225)
Q Consensus 40 tlpGVL~fLQ~Ew~r~Er~------------------r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~AL 101 (225)
-...|-|.||++-++--.. +..-+-|++.-+.+|..|+||++ +|...+.-.+..+
T Consensus 22 ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~-------~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 22 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEIT-------TLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 3456777787776654222 22223456666777999999995 4555566667777
Q ss_pred HHHHHHhhhcc
Q psy17136 102 KQERAKYHQLK 112 (225)
Q Consensus 102 kqERaK~~~lk 112 (225)
.+.|.....+.
T Consensus 95 erlr~~~~~~~ 105 (121)
T 3mq7_A 95 ERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhchhhh
Confidence 77777765443
No 16
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=46.67 E-value=48 Score=25.97 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhhhhcccccc----HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHH----HHHHHHhhhc
Q psy17136 46 HFIQHEWARFEMERSQWEVD----KAELNARIAFLQGERKGQENLKHDLIRRIKMLEYAL----KQERAKYHQL 111 (225)
Q Consensus 46 ~fLQ~Ew~r~Er~r~~WeiE----RaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~AL----kqERaK~~~l 111 (225)
+-|+..-.++..+.-.|--. .+|.-..|..||.|+..+...+..|..+|.-||.+- +++|+....+
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SL 79 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSL 79 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhH
Confidence 34566666666666666433 344456799999999999999999999999999886 4556654443
No 17
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=45.93 E-value=26 Score=27.07 Aligned_cols=28 Identities=36% Similarity=0.488 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHH
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRIKMLEYAL 101 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRIKMLE~AL 101 (225)
..++.+|..|+.|+ ..|.++|++||--|
T Consensus 15 ~~lr~ei~~Le~E~-------~rLr~~~~~LE~~L 42 (100)
T 1go4_E 15 DTLRLKVEELEGER-------SRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 34677888888887 78889999999776
No 18
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.02 E-value=15 Score=27.01 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=4.9
Q ss_pred chHHHHHHHH
Q psy17136 40 SIPGILHFIQ 49 (225)
Q Consensus 40 tlpGVL~fLQ 49 (225)
.|...+.|++
T Consensus 46 iL~~A~~YI~ 55 (88)
T 1nkp_A 46 ILKKATAYIL 55 (88)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445555544
No 19
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=44.66 E-value=25 Score=24.52 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=26.1
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHH
Q psy17136 70 NARIAFLQGERKGQENLKHDLIRRIKMLEYAL 101 (225)
Q Consensus 70 ~arIa~LEGErk~qenlk~dL~RRIKMLE~AL 101 (225)
+++|..||.+...++.-+..|...|.+|-.-|
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999988999999888886544
No 20
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=44.39 E-value=41 Score=25.35 Aligned_cols=40 Identities=23% Similarity=0.579 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHhhhhhhhHhH-------------HHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 65 DKAELNARIAFLQGERKGQENL-------------KHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 65 ERaEm~arIa~LEGErk~qenl-------------k~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
|+..++++|+.|+.+...++.. ..-+.+.|++|= .|+.+|
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh--------~YNeiK 54 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLH--------TYNEIR 54 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHH--------HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--------HHhHHH
Confidence 4555555555555555443332 233567777775 566555
No 21
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.90 E-value=48 Score=25.61 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHH
Q psy17136 65 DKAELNARIAFLQGERKGQENLKHDLIRRIKMLEY 99 (225)
Q Consensus 65 ERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ 99 (225)
|=.||+..|..|+.|+.++.+.+..|-..|.-+|.
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44556666666666666666666555555554444
No 22
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=43.51 E-value=1.1e+02 Score=23.65 Aligned_cols=42 Identities=12% Similarity=0.014 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy17136 66 KAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAK 107 (225)
Q Consensus 66 RaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK 107 (225)
+.-|..+++.|+.++..++.+...|...|...+..+..--+.
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~ 124 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEE 124 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888888888888888776544443
No 23
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=42.95 E-value=34 Score=26.68 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHH
Q psy17136 43 GILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLK 87 (225)
Q Consensus 43 GVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk 87 (225)
.+++|++.+...+..-...-..-..++..+|..|..|.+.++.-.
T Consensus 4 ~A~~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~ 48 (171)
T 2zvf_A 4 AAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEI 48 (171)
T ss_dssp GGTHHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 457788877777665555555444588899999988875444333
No 24
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=42.84 E-value=69 Score=24.67 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q psy17136 65 DKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQE 104 (225)
Q Consensus 65 ERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqE 104 (225)
||..+-.++...|+|...+..-...|.+++...+.|++.-
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~ 44 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQEL 44 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777888888888777777777777777777776543
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.63 E-value=34 Score=33.55 Aligned_cols=38 Identities=18% Similarity=0.417 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
||+.+|..|+-++. ..+.+|+.|+..|+..|.|.++|-
T Consensus 114 ELRRrIqyLKekVd-------nQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 114 DLRSRIEVLKRKVI-------EKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655543 223666666666666666666664
No 26
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=42.57 E-value=62 Score=21.68 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q psy17136 70 NARIAFLQGERKGQENLKHDLIRRIKMLEYALKQER 105 (225)
Q Consensus 70 ~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqER 105 (225)
+|.+..||...+.++..+..|--||.-|+..-.-.|
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 356677888888888888888888888776544444
No 27
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=42.17 E-value=74 Score=24.41 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHH
Q psy17136 65 DKAELNARIAFLQGERKGQENLKHDLIRRIKMLE 98 (225)
Q Consensus 65 ERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE 98 (225)
|=.||+..|..|+.|+.++++.+..|-..|.-+|
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455555666666666555555555555444443
No 28
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=41.53 E-value=38 Score=28.74 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=35.5
Q ss_pred HHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 74 AFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 74 a~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
++||.++...+.-.++|..++..|.+-+-.-|.||....
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999998764
No 29
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=40.83 E-value=57 Score=25.44 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHH
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLE 98 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE 98 (225)
-+..+++.|+.++..++.+...|...|..+|
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444444444444444
No 30
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.53 E-value=1.1e+02 Score=22.38 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17136 69 LNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLKY 113 (225)
Q Consensus 69 m~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk~ 113 (225)
|+.-+.....|++..+.+-++|..+|.-+|..++.-|..+.++++
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444455666666777777888888888888888877654
No 31
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=39.18 E-value=1e+02 Score=23.01 Aligned_cols=42 Identities=19% Similarity=0.149 Sum_probs=32.5
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy17136 70 NARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQL 111 (225)
Q Consensus 70 ~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~l 111 (225)
+.+...++.+...++.-|..|..+|.+|+..+..-|.-+..+
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 455566667777777778999999999999999888776653
No 32
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=39.07 E-value=98 Score=22.34 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=33.4
Q ss_pred cccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHH----HH--HHHHHHHHHhhhcccCCcC
Q psy17136 63 EVDKAELNARIAFLQGERKGQENLKHDLIRRIKM----LE--YALKQERAKYHQLKYGTEL 117 (225)
Q Consensus 63 eiERaEm~arIa~LEGErk~qenlk~dL~RRIKM----LE--~ALkqERaK~~~lk~g~~~ 117 (225)
.-||..++..|+.||.++... +.|+.+...- |- -+|-.|=|.|.+|--|.+.
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~---r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGEe~ 61 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEM---RARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEE 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 357889999999999887643 4444444321 22 2566888999999766653
No 33
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=38.67 E-value=64 Score=30.35 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHhhh-------hhhhHhHHHHHHHHHHHHHHHH
Q psy17136 65 DKAELNARIAFLQGE-------RKGQENLKHDLIRRIKMLEYAL 101 (225)
Q Consensus 65 ERaEm~arIa~LEGE-------rk~qenlk~dL~RRIKMLE~AL 101 (225)
-=.+|..+|..|+-- ++.++..-++|+..|+-||.++
T Consensus 114 ~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 114 INEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666543 3334444444555555555555
No 34
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=38.44 E-value=17 Score=25.95 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=9.6
Q ss_pred HHHhhhhhhhHhHHHHHHHHHHHHH
Q psy17136 74 AFLQGERKGQENLKHDLIRRIKMLE 98 (225)
Q Consensus 74 a~LEGErk~qenlk~dL~RRIKMLE 98 (225)
..|+.+...++.-...|.+.+..|+
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444443
No 35
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=37.84 E-value=1.2e+02 Score=25.38 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHh-------HHHHHHHHHHHHH-----------HHHHHHHHHhh
Q psy17136 48 IQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQEN-------LKHDLIRRIKMLE-----------YALKQERAKYH 109 (225)
Q Consensus 48 LQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qen-------lk~dL~RRIKMLE-----------~ALkqERaK~~ 109 (225)
||.+|..-=++|+.-.---+||+.||..|+.|++.... =++.|.-||--|| |.||.-..+|.
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q ss_pred h
Q psy17136 110 Q 110 (225)
Q Consensus 110 ~ 110 (225)
.
T Consensus 154 q 154 (168)
T 3o0z_A 154 Q 154 (168)
T ss_dssp H
T ss_pred H
No 36
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=37.44 E-value=27 Score=26.09 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhhhhccccccHHHHHHHHHHH-------hhhhhhhHhHHHHHHHHHHHHHHHHHH
Q psy17136 46 HFIQHEWARFEMERSQWEVDKAELNARIAFL-------QGERKGQENLKHDLIRRIKMLEYALKQ 103 (225)
Q Consensus 46 ~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~L-------EGErk~qenlk~dL~RRIKMLE~ALkq 103 (225)
.-|-.|.+.+--.+++-++=|-.|-+||-+| .+|..+....+..+.-||+-||..||.
T Consensus 12 EnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 12 ENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455677777778888888888888877665 556677777888888888888877663
No 37
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=35.87 E-value=51 Score=22.21 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHHHHHHHHH
Q psy17136 69 LNARIAFLQGERKGQENLKHDLIRRIKMLEY 99 (225)
Q Consensus 69 m~arIa~LEGErk~qenlk~dL~RRIKMLE~ 99 (225)
|+.|.|.|-+|-. ..+..|..||..||.
T Consensus 17 LqTr~ArLlae~~---ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 17 LQTRFARLLAEYN---ATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 5667777766654 455788888888884
No 38
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=35.05 E-value=83 Score=22.98 Aligned_cols=38 Identities=16% Similarity=0.056 Sum_probs=29.1
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy17136 70 NARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAK 107 (225)
Q Consensus 70 ~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK 107 (225)
+.+...++.....++.-|..|..+|.+|+..+..-|.-
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777899999999999888776644
No 39
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=32.98 E-value=1.8e+02 Score=23.10 Aligned_cols=54 Identities=15% Similarity=0.388 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHH--hhhh------hhhHhHHHHHHHHHHHHHHHH
Q psy17136 42 PGILHFIQHEWARFEMERSQWEVDKAELNARIAFL--QGER------KGQENLKHDLIRRIKMLEYAL 101 (225)
Q Consensus 42 pGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~L--EGEr------k~qenlk~dL~RRIKMLE~AL 101 (225)
|.-+.-|+.|...+ |..+|.+....|+.. +|.+ ...+.-...+-+||..||.-|
T Consensus 8 ~~g~~~L~~EL~~L------~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L 69 (158)
T 2p4v_A 8 REGYEKLKQELNYL------WREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCM 69 (158)
T ss_dssp HHHHHHHHHHHHHH------HHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777665 567888888877554 3332 223444455666777777554
No 40
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=32.52 E-value=73 Score=27.76 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=38.3
Q ss_pred cccchHHHHHHHHHHHHhhhhh--hccccccHHHHHHHHHHHhhhhhhhH-hHHHHHHHHHHHHHHHHHHHHHH
Q psy17136 37 IQYSIPGILHFIQHEWARFEME--RSQWEVDKAELNARIAFLQGERKGQE-NLKHDLIRRIKMLEYALKQERAK 107 (225)
Q Consensus 37 ~~YtlpGVL~fLQ~Ew~r~Er~--r~~WeiERaEm~arIa~LEGErk~qe-nlk~dL~RRIKMLE~ALkqERaK 107 (225)
++-.|.+-|+|....=...-.+ +..|+. |+..|+.+.+.++ .++.....||+-|++||+=-.+-
T Consensus 99 Aq~lL~~YI~fv~~~v~~el~~~l~~~i~~-------r~~~l~~ql~~~~~~ak~qr~~rI~rL~~AL~IA~aa 165 (248)
T 4e29_A 99 AQMKLAQYIQQVDDKVNQELERDLKDNIAL-------GRKNLQDSLRTQEVVAQEQKDLRIRQIEEALRYADEA 165 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456788888887554443322 333444 4444555444443 24455668999999999876544
No 41
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=31.77 E-value=51 Score=30.12 Aligned_cols=39 Identities=26% Similarity=0.190 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q psy17136 66 KAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQE 104 (225)
Q Consensus 66 RaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqE 104 (225)
..+++.+|..|+-+.+.++...+++..+++-|+.-|..|
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666555554
No 42
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=31.71 E-value=88 Score=24.00 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=45.6
Q ss_pred cccchHHHHHHHHHHHHhhh-------hhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHH
Q psy17136 37 IQYSIPGILHFIQHEWARFE-------MERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYAL 101 (225)
Q Consensus 37 ~~YtlpGVL~fLQ~Ew~r~E-------r~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~AL 101 (225)
++|- | -|+.-+.-|..-+ .....--.|.+++-+++|.-............+|.++|.-|..-|
T Consensus 25 ~~~a-p-El~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 25 TDDV-A-ELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp CTTS-H-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc-H-HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4563 5 4666665554433 344455678889999999999888888888899999999987554
No 43
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.32 E-value=1.7e+02 Score=24.50 Aligned_cols=59 Identities=15% Similarity=0.008 Sum_probs=43.0
Q ss_pred hhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 54 RFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 54 r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
+++..+..=..|-.++...++.|+......+.--.|+.+.|+-+|..+.+-+++..+.+
T Consensus 22 ~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~ 80 (256)
T 3na7_A 22 SLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQ 80 (256)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433333356666677777888888877888888888888888888888888777655
No 44
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=30.60 E-value=21 Score=25.69 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=13.0
Q ss_pred hHhhHHHHHHHHHhCC
Q psy17136 152 KQGRQILRQYLQEIGY 167 (225)
Q Consensus 152 kqgRqLLrqYLqEIGy 167 (225)
-.-|.-||.|+.|||-
T Consensus 53 ahirealrryieeige 68 (70)
T 2q2k_A 53 AHIREALRRYIEEIGE 68 (70)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3468999999999984
No 45
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=30.43 E-value=1.1e+02 Score=22.98 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=37.0
Q ss_pred cccchHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q psy17136 37 IQYSIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQER 105 (225)
Q Consensus 37 ~~YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqER 105 (225)
..|++...+.||. .||..|+...+..+..-..+..+|.+++..|++.-
T Consensus 82 vE~~~~eA~~~l~---------------------~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 82 IKKNFEDAMESIK---------------------SQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEEEHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3689999988887 56667777777777777888888888888887653
No 46
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=29.95 E-value=61 Score=24.79 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhhhhHhHHH---HHHHHHHHHHHHHHHHHHH
Q psy17136 68 ELNARIAFLQGERKGQENLKH---DLIRRIKMLEYALKQERAK 107 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~---dL~RRIKMLE~ALkqERaK 107 (225)
.|.+.|..|..++.....|.. .|.+++..|..+|++.++-
T Consensus 3 ~l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~ 45 (182)
T 3kqg_A 3 TLNAQIPELKSDLEKASALNTKIRALQGSLENMSKLLKRQNDI 45 (182)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777776666655443 5666777777777776553
No 47
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=29.95 E-value=62 Score=20.75 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHHHHHHH
Q psy17136 69 LNARIAFLQGERKGQENLKHDLIRRIKML 97 (225)
Q Consensus 69 m~arIa~LEGErk~qenlk~dL~RRIKML 97 (225)
|+.+++..+.+...++.-+.-|-..|.-|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 55666666666644444444444444433
No 48
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.81 E-value=98 Score=28.22 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=14.5
Q ss_pred chhHhhHHHHHHHHHhCCCcccc
Q psy17136 150 SWKQGRQILRQYLQEIGYTDTII 172 (225)
Q Consensus 150 ~wkqgRqLLrqYLqEIGytD~Il 172 (225)
.+..-.+|+...|. ||.-+|+
T Consensus 125 Vf~~v~~lv~~~l~--G~N~tif 145 (403)
T 4etp_A 125 VFKEVGQLVQSSLD--GYNVAIF 145 (403)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEE
T ss_pred HHHHHHHHHHHHhC--CcceEEE
Confidence 45666778888886 8876553
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.78 E-value=71 Score=22.06 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=16.4
Q ss_pred cccHHHHHHHHHHHhhhhhhhHhH
Q psy17136 63 EVDKAELNARIAFLQGERKGQENL 86 (225)
Q Consensus 63 eiERaEm~arIa~LEGErk~qenl 86 (225)
.-+..+|+++|+.|+.|..-+.+|
T Consensus 36 ~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 36 EKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888777666554
No 50
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=27.48 E-value=1.2e+02 Score=23.93 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=27.1
Q ss_pred ccccHHHHHHHHHHH--hh------hhhhhHhHHHHHHHHHHHHHHHHHH
Q psy17136 62 WEVDKAELNARIAFL--QG------ERKGQENLKHDLIRRIKMLEYALKQ 103 (225)
Q Consensus 62 WeiERaEm~arIa~L--EG------Erk~qenlk~dL~RRIKMLE~ALkq 103 (225)
|..+|.+....|+.- .| +....+.-...+-+||..||..|..
T Consensus 22 ~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~ 71 (156)
T 2f23_A 22 ERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSR 71 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667788887777655 22 2333444455667799999987764
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.07 E-value=2.6e+02 Score=25.36 Aligned_cols=18 Identities=33% Similarity=0.294 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy17136 92 RRIKMLEYALKQERAKYH 109 (225)
Q Consensus 92 RRIKMLE~ALkqERaK~~ 109 (225)
+.+..||..++..+.+..
T Consensus 544 ~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHH
Confidence 334444444444444433
No 52
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=27.05 E-value=80 Score=23.63 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q psy17136 65 DKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQER 105 (225)
Q Consensus 65 ERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqER 105 (225)
.=.+++.||.-|+.|+...|...+|.++=-.-|-..|-.-|
T Consensus 13 ~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IR 53 (79)
T 1tu3_F 13 LMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIR 53 (79)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999987776665554443
No 53
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=26.68 E-value=1.3e+02 Score=25.72 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhhhhhccc---cccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHH
Q psy17136 43 GILHFIQHEWARFEMERSQW---EVDKAELNARIAFLQGERKGQENLKHDLIRRIK 95 (225)
Q Consensus 43 GVL~fLQ~Ew~r~Er~r~~W---eiERaEm~arIa~LEGErk~qenlk~dL~RRIK 95 (225)
.|+.-|-+-+.|+-|-++.- .-||.-|.+|+..|..+...++.||.++-||=.
T Consensus 77 kVv~LLLsLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~ 132 (190)
T 3thf_A 77 NITSLLLSLSERLAQTESSLETRQQERGALESKRDLLYEQMEEAQRLKSDIERRGV 132 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555544443332 788999999999999999999999999999943
No 54
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.67 E-value=1.3e+02 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=16.2
Q ss_pred HHHHHHhhhhhhhHhHHHHHHHHHHHHHHH
Q psy17136 71 ARIAFLQGERKGQENLKHDLIRRIKMLEYA 100 (225)
Q Consensus 71 arIa~LEGErk~qenlk~dL~RRIKMLE~A 100 (225)
..|..|+.|+..+...+..|..||.-||.+
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666665555555555555555555444
No 55
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.51 E-value=1.5e+02 Score=21.38 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHH
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYAL 101 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~AL 101 (225)
.+..++.+|+.+.+.++.-..++...++-|+..|
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666555555555555555555443
No 56
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.22 E-value=74 Score=22.83 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=15.0
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHH
Q psy17136 69 LNARIAFLQGERKGQENLKHDLIRRIKMLEYAL 101 (225)
Q Consensus 69 m~arIa~LEGErk~qenlk~dL~RRIKMLE~AL 101 (225)
|..+|..|+.+...+..-+..|...|..|.-.|
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444555555554433
No 57
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.17 E-value=3e+02 Score=26.03 Aligned_cols=66 Identities=9% Similarity=0.075 Sum_probs=44.1
Q ss_pred HHHHHHhhhhhhccccccHHHHHHHHHHHhhh-----------hhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17136 48 IQHEWARFEMERSQWEVDKAELNARIAFLQGE-----------RKGQENLKHDLIRRIKMLEYALKQERAKYHQLKY 113 (225)
Q Consensus 48 LQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGE-----------rk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk~ 113 (225)
|-.+|+.+..+-....-+|.++..+|+.+.+. ...+..--+.|...|+.||..++.--++...+..
T Consensus 75 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 75 TWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666777777777765422 2233444567788899999988887777766543
No 58
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.09 E-value=1.3e+02 Score=20.25 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHH
Q psy17136 66 KAELNARIAFLQGERKGQENLKHDLIRRIKMLE 98 (225)
Q Consensus 66 RaEm~arIa~LEGErk~qenlk~dL~RRIKMLE 98 (225)
|.--++.|..||.+...++.-+..|...|..|.
T Consensus 17 R~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 17 RRKKKEYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333457788888888888888888888887775
No 59
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=24.98 E-value=1.7e+02 Score=21.43 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQL 111 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~l 111 (225)
.+|+.+|..|+.|...+......+..-|.-| .++.|.-|..+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql---~~rQrd~Y~dL 64 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQV---VERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4577888888888877777666666655444 46666677655
No 60
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=24.45 E-value=1.2e+02 Score=26.78 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHH
Q psy17136 46 HFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLE 98 (225)
Q Consensus 46 ~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE 98 (225)
.||..+-..+.++-..-.|-|.=..+-|..+.-.+..+..+++-+..||.-||
T Consensus 152 ~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lE 204 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIE 204 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666666555555555554455555555555555555677777777655
No 61
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=24.14 E-value=1.3e+02 Score=24.06 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=30.4
Q ss_pred hhhhhccccccHHHHH--HHHHHHhhhhhhhHhHHHH-------HHHHHHHHHHHHH
Q psy17136 55 FEMERSQWEVDKAELN--ARIAFLQGERKGQENLKHD-------LIRRIKMLEYALK 102 (225)
Q Consensus 55 ~Er~r~~WeiERaEm~--arIa~LEGErk~qenlk~d-------L~RRIKMLE~ALk 102 (225)
=|.+|..+-+|-..+. .||..|+.+++....+-.+ ..|++.++|--|.
T Consensus 34 dE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLe 90 (147)
T 2b9c_A 34 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLE 90 (147)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3456666777766663 5677777777666555443 5666777776665
No 62
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=23.96 E-value=75 Score=20.96 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17136 88 HDLIRRIKMLEYALKQERAK 107 (225)
Q Consensus 88 ~dL~RRIKMLE~ALkqERaK 107 (225)
.+|..||..||..|.+-++.
T Consensus 47 ~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555543
No 63
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=23.60 E-value=1.4e+02 Score=23.24 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=41.4
Q ss_pred cccchHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy17136 37 IQYSIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAK 107 (225)
Q Consensus 37 ~~YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK 107 (225)
..|++...+.||. .||.+|+...+..+..-.++..+|..++..|++.-.+
T Consensus 92 vE~~~~eA~~~l~---------------------~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 92 VERSIDEAISFLE---------------------KRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp EEEEHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred EEecHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888888876 6788888888888888899999999999998876544
No 64
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=23.39 E-value=93 Score=18.79 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHH
Q psy17136 68 ELNARIAFLQGERKGQENLKHDL 90 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL 90 (225)
.|+..+.+|.||.++++.--+||
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 46677888889988777655554
No 65
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.37 E-value=1.7e+02 Score=26.84 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHH---HHHhhh
Q psy17136 65 DKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQE---RAKYHQ 110 (225)
Q Consensus 65 ERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqE---RaK~~~ 110 (225)
||.+|...+..|+-+.+.++.-.+.+...+++|+..|.++ |.++|.
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n 52 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHN 52 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666665666666666666665554 444443
No 66
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=23.32 E-value=1.5e+02 Score=24.91 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=30.0
Q ss_pred cHHH-HHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17136 65 DKAE-LNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLK 112 (225)
Q Consensus 65 ERaE-m~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk 112 (225)
.|+| ++.=|.+-+... ..|.+.|..||..|..+..+|..+.
T Consensus 121 ~paE~ireli~~AertV-------~kLqkeiD~LEDeL~~eKek~k~i~ 162 (175)
T 3mud_A 121 NPAEVIRELICYCLDTT-------AKNEKSIDDLEEKVAHAKEENLNMH 162 (175)
T ss_dssp CHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677 566666655554 6778888999999999988887653
No 67
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.32 E-value=94 Score=28.59 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=13.6
Q ss_pred hhHhhHHHHHHHHHhCCCcccc
Q psy17136 151 WKQGRQILRQYLQEIGYTDTII 172 (225)
Q Consensus 151 wkqgRqLLrqYLqEIGytD~Il 172 (225)
+....+|+...|. ||.-+|+
T Consensus 124 f~~v~plv~~~l~--G~n~tif 143 (412)
T 3u06_A 124 FEMVSPLIQSALD--GYNICIF 143 (412)
T ss_dssp HTTTHHHHHHHHT--TCCEEEE
T ss_pred HHHHHHHHHHHHC--CCceEEE
Confidence 4455688888886 7776554
No 68
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.00 E-value=1.6e+02 Score=20.96 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHH
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYAL 101 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~AL 101 (225)
.+..++.+++.+.+.++.-..++...++-|+..|
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666665555555555555555444
No 69
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.81 E-value=1e+02 Score=21.73 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=5.0
Q ss_pred chHHHHHHHH
Q psy17136 40 SIPGILHFIQ 49 (225)
Q Consensus 40 tlpGVL~fLQ 49 (225)
+|...+.|+.
T Consensus 41 iL~~Ai~YI~ 50 (83)
T 1nkp_B 41 ILDKATEYIQ 50 (83)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445555554
No 70
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=22.59 E-value=1.4e+02 Score=26.05 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17136 68 ELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYH 109 (225)
Q Consensus 68 Em~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~ 109 (225)
++..+|..|+.........-....+||+.||..|+.--....
T Consensus 10 ~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iR 51 (233)
T 2yko_A 10 QLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVK 51 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 577899999999888888888899999999999987654443
No 71
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=21.92 E-value=2.7e+02 Score=21.36 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy17136 67 AELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQL 111 (225)
Q Consensus 67 aEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~~l 111 (225)
++|+..|.+|-.-+-.+|.-+-||-.+++.=+|-|...+.+...+
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 456666666655555666666999999999999999999998765
No 72
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.30 E-value=2.5e+02 Score=21.33 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17136 89 DLIRRIKMLEYALKQER 105 (225)
Q Consensus 89 dL~RRIKMLE~ALkqER 105 (225)
++...|.-||.+|.+-|
T Consensus 79 ~~q~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 79 DARNKLAELEEALQKAK 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 33344444444444443
No 73
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.87 E-value=2.3e+02 Score=20.71 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=21.9
Q ss_pred ccccccHH--HHHHHHHHHhhhhhhhHhHHHHHHHHHHHH
Q psy17136 60 SQWEVDKA--ELNARIAFLQGERKGQENLKHDLIRRIKML 97 (225)
Q Consensus 60 ~~WeiERa--Em~arIa~LEGErk~qenlk~dL~RRIKML 97 (225)
..|++=.. +|+..|+.|.|....+.+--.++.+|-+-+
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555444 666666666666666665555555555443
No 74
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=20.38 E-value=2e+02 Score=22.22 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Q psy17136 42 PGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRR 93 (225)
Q Consensus 42 pGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RR 93 (225)
|.+|.|++ ..|..|..|+ -|+-+++++..-|.+++.|..+...+
T Consensus 48 ~~Ll~~i~----~~ee~R~~yE----~LQDkL~qi~eAR~ALdaLR~eH~~K 91 (98)
T 3f1i_H 48 PQLLELLN----QLDERRLYYE----GLQDKLAQIRDARGALSALREEHREK 91 (98)
T ss_dssp HHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777 5666666665 57888888888888888888877443
No 75
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.27 E-value=4e+02 Score=24.64 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=49.1
Q ss_pred HHHHHHHHhhhhhhccccccHHHHHHHHHHHhhh---hhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy17136 46 HFIQHEWARFEMERSQWEVDKAELNARIAFLQGE---RKGQENLKHDLIRRIKMLEYALKQERAKYHQLKY 113 (225)
Q Consensus 46 ~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGE---rk~qenlk~dL~RRIKMLE~ALkqERaK~~~lk~ 113 (225)
--|-.+|+.+..+-..-.-+|.++..+|..+... ...+..--+.|..+|+-||..++.--++...+..
T Consensus 34 ~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 34 LKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888877777778888888888876432 2334444567888999999999888887776654
No 76
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=20.24 E-value=45 Score=23.90 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=13.1
Q ss_pred cchHHHHHHHHHHHHhh
Q psy17136 39 YSIPGILHFIQHEWARF 55 (225)
Q Consensus 39 YtlpGVL~fLQ~Ew~r~ 55 (225)
..=|.|++||+.+-.-+
T Consensus 29 LRsPEVI~Fl~~qq~~l 45 (62)
T 2kw3_C 29 LRSPEVVQFLQKQQQLL 45 (62)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 45599999999876544
Done!