Query psy17136
Match_columns 225
No_of_seqs 116 out of 139
Neff 3.5
Searched_HMMs 13730
Date Fri Aug 16 22:49:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17136.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17136hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3b8ma1 d.58.60.1 (A:64-330) E 36.0 55 0.004 25.9 7.5 63 38-107 122-187 (267)
2 d1sjpa2 c.8.5.1 (A:189-372) Gr 33.7 23 0.0016 27.2 4.5 14 64-77 169-182 (184)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 33.5 14 0.001 24.8 2.9 12 39-50 45-56 (88)
4 d1kida_ c.8.5.1 (A:) GroEL, A 28.4 31 0.0023 26.7 4.5 34 40-78 158-191 (193)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 28.1 60 0.0044 22.2 5.7 37 66-109 67-103 (107)
6 d3b8oa1 d.58.60.1 (A:55-319) L 24.5 22 0.0016 28.7 3.0 62 38-105 119-182 (265)
7 d2daha1 a.5.2.1 (A:8-48) Ubiqu 22.0 14 0.001 22.7 1.0 14 160-173 7-20 (41)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 21.6 79 0.0058 21.8 5.3 47 38-105 83-129 (133)
9 d2fm8a1 d.198.1.1 (A:1-134) Su 21.2 23 0.0017 26.7 2.3 18 156-173 8-25 (134)
10 d1nkpb_ a.38.1.1 (B:) Max prot 21.2 25 0.0018 23.3 2.2 12 38-49 39-50 (83)
No 1
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=35.96 E-value=55 Score=25.92 Aligned_cols=63 Identities=21% Similarity=0.326 Sum_probs=38.9
Q ss_pred ccchHHHHHHHHHHHHhhhh--hhccccccHHHHHHHHHHHhhhhhhhHh-HHHHHHHHHHHHHHHHHHHHHH
Q psy17136 38 QYSIPGILHFIQHEWARFEM--ERSQWEVDKAELNARIAFLQGERKGQEN-LKHDLIRRIKMLEYALKQERAK 107 (225)
Q Consensus 38 ~YtlpGVL~fLQ~Ew~r~Er--~r~~WeiERaEm~arIa~LEGErk~qen-lk~dL~RRIKMLE~ALkqERaK 107 (225)
+-.|-+-+.|.-..=...-. -...|+. ++..|+.+.+.++. ++.....||.-|++||+--++-
T Consensus 122 ~~lL~~YI~~v~~~v~~~l~~~~~~~i~~-------~~~~l~~~~~~~~~~ak~~~~~~i~~l~~Al~IA~~a 187 (267)
T d3b8ma1 122 QTVLSGYIDYISALVVKESIENVRNKLEI-------KTQFEKEKLAQDRIKMKNQLDANIQRLNYSLDIANAA 187 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567778887765555333 3334444 44445555444433 3566778999999999987654
No 2
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Probab=33.72 E-value=23 Score=27.24 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=6.7
Q ss_pred ccHHHHHHHHHHHh
Q psy17136 64 VDKAELNARIAFLQ 77 (225)
Q Consensus 64 iERaEm~arIa~LE 77 (225)
.||.-|+.|||.|-
T Consensus 169 ~e~~~L~eRLAkLs 182 (184)
T d1sjpa2 169 YDREKLQERLAKLA 182 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 34444555555544
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.50 E-value=14 Score=24.81 Aligned_cols=12 Identities=8% Similarity=0.074 Sum_probs=7.0
Q ss_pred cchHHHHHHHHH
Q psy17136 39 YSIPGILHFIQH 50 (225)
Q Consensus 39 YtlpGVL~fLQ~ 50 (225)
..|-..+.|++.
T Consensus 45 ~iL~~A~~yI~~ 56 (88)
T d1nkpa_ 45 VILKKATAYILS 56 (88)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455566666653
No 4
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]}
Probab=28.37 E-value=31 Score=26.70 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=20.5
Q ss_pred chHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhh
Q psy17136 40 SIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQG 78 (225)
Q Consensus 40 tlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEG 78 (225)
.+..-++.|+.++.. ..-+.||.-|+.|||.|-|
T Consensus 158 ~I~~Ri~~Lk~~l~~-----~~~~~~~e~L~eRlakLsG 191 (193)
T d1kida_ 158 AIQGRVAQIRQQIEE-----ATSDYDREKLQERVAKLAG 191 (193)
T ss_dssp HHHHHHHHHHHHHHH-----CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHcC
Confidence 355566677666643 3344555667777777765
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=28.06 E-value=60 Score=22.21 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17136 66 KAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYH 109 (225)
Q Consensus 66 RaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqERaK~~ 109 (225)
..++..++.+|+++.+.++ +.++.|+..+..-+.++.
T Consensus 67 ~~~l~~~~e~l~~~i~~l~-------~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 67 TEELQEKLETLQLREKTIE-------RQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3455677777777775544 444455544444444443
No 6
>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis protein WzzE {Escherichia coli [TaxId: 562]}
Probab=24.52 E-value=22 Score=28.65 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=33.2
Q ss_pred ccchHHHHHHHHHHHHhhh--hhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q psy17136 38 QYSIPGILHFIQHEWARFE--MERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQER 105 (225)
Q Consensus 38 ~YtlpGVL~fLQ~Ew~r~E--r~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqER 105 (225)
+-.|-+-|.|.-..=...- --...|+..+..|+++|..++... +.....||.-|++||+=-.
T Consensus 119 ~~lL~~YI~~v~~~~~~~l~~~l~~~i~~~~~~l~~~~~~~~~~a------k~~~~~~I~~L~~AL~IA~ 182 (265)
T d3b8oa1 119 NNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVA------KAIYDRRMNSIEQALKIAE 182 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 4556777777764433322 223455555555555555555443 3566789999999997543
No 7
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.95 E-value=14 Score=22.69 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=10.6
Q ss_pred HHHHHhCCCccccc
Q psy17136 160 QYLQEIGYTDTIID 173 (225)
Q Consensus 160 qYLqEIGytD~Ild 173 (225)
.-|+++||+|.=..
T Consensus 7 ~~L~~MGF~d~~~N 20 (41)
T d2daha1 7 EQLRSMGFLNREAN 20 (41)
T ss_dssp HHHHHHTCCCHHHH
T ss_pred HHHHHcCCCCHHHH
Confidence 45899999996443
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.60 E-value=79 Score=21.85 Aligned_cols=47 Identities=6% Similarity=-0.014 Sum_probs=29.8
Q ss_pred ccchHHHHHHHHHHHHhhhhhhccccccHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q psy17136 38 QYSIPGILHFIQHEWARFEMERSQWEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQER 105 (225)
Q Consensus 38 ~YtlpGVL~fLQ~Ew~r~Er~r~~WeiERaEm~arIa~LEGErk~qenlk~dL~RRIKMLE~ALkqER 105 (225)
.+++...+.||. .||..|+..++....-..++...|.+|+..+.+--
T Consensus 83 E~~~~eA~~~l~---------------------~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~ 129 (133)
T d1fxkc_ 83 KKNFEDAMESIK---------------------SQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEEHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888876 34555555555555555666666777666665543
No 9
>d2fm8a1 d.198.1.1 (A:1-134) Surface presentation of antigens protein SpaK (Spa15) {Salmonella typhimurium [TaxId: 90371]}
Probab=21.19 E-value=23 Score=26.66 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCCccccc
Q psy17136 156 QILRQYLQEIGYTDTIID 173 (225)
Q Consensus 156 qLLrqYLqEIGytD~Ild 173 (225)
+|+|.+|..+|+.|.|++
T Consensus 8 ~lvr~~L~~~G~~~~i~~ 25 (134)
T d2fm8a1 8 ELVRSALEVSGCDPSLIG 25 (134)
T ss_dssp HHHHHHHHHHTCCGGGBC
T ss_pred HHHHHHHHHcCCChhhcc
Confidence 689999999999998875
No 10
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.17 E-value=25 Score=23.27 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=7.7
Q ss_pred ccchHHHHHHHH
Q psy17136 38 QYSIPGILHFIQ 49 (225)
Q Consensus 38 ~YtlpGVL~fLQ 49 (225)
...|-..+.|+.
T Consensus 39 ~~iL~~A~~yI~ 50 (83)
T d1nkpb_ 39 AQILDKATEYIQ 50 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 355667777775
Done!