RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17136
         (225 letters)



>1fep_A FEPA, ferric enterobactin receptor; outer membrane, iron transport,
           transport, TONB, signal, membrane protein; 2.40A
           {Escherichia coli K12} SCOP: f.4.3.3
          Length = 724

 Score = 29.2 bits (65), Expect = 1.3
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 3/169 (1%)

Query: 4   TEDYRMDDNSSVNQNGQIGTNSNNNKSDDGGQRIQYSI--PGILHFIQHEWARFEMERSQ 61
           +    +    + N N    T S      +   R  Y++   G            + E ++
Sbjct: 254 SRQGNLYAGDTQNTNSDSYTRSKYGDETNRLYRQNYALTWNGGWDNGVTTSNWVQYEHTR 313

Query: 62  WEVDKAELNARIAFLQGERKGQENLKHDLIRRIKMLEYALKQERAKYHQLKYGTELQQGD 121
                  L         E+  Q+ +  DL   +   E  L  +      L  GTE  Q  
Sbjct: 314 NSRIPEGLAGGTEGKFNEKATQDFVDIDLDDVMLHSEVNLPIDFLVNQTLTLGTEWNQQR 373

Query: 122 MNPPTFDEPGVPEVNVDSEAPFTSVSNISWKQGRQILRQYLQ-EIGYTD 169
           M   + +   +   N        S ++ S     +I   + +  +  TD
Sbjct: 374 MKDLSSNTQALTGTNTGGAIDGVSTTDRSPYSKAEIFSLFAENNMELTD 422


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.2 bits (59), Expect = 2.8
 Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 32/56 (57%)

Query: 92  RRIKMLEYALKQERAKYHQLKYGTELQQGDMNPPTFDEPGVPEVNVDSEAPFTSVS 147
           + +K L+ +LK     Y                             DS AP  ++ 
Sbjct: 20  QALKKLQASLK----LY--------------------AD-------DS-APALAIK 43


>1k32_A Tricorn protease; protein degradation, substrate gating, serine
           protease, beta propeller, proteasome, hydrolase; 2.00A
           {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
           b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
          Length = 1045

 Score = 27.8 bits (61), Expect = 3.9
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 146 VSNISWKQGRQILRQYLQEIGYTDTIIDVRSN 177
           + ++      +  R ++ E  Y   I+DVR N
Sbjct: 858 IPDMGMMGLNEFYRLFINESSYQGLIVDVRFN 889


>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
           antibiotics biosynthesis, structural genomics; 2.00A
           {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
          Length = 299

 Score = 27.2 bits (60), Expect = 4.9
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 4/37 (10%)

Query: 96  MLEYALKQERAKYHQLKYGTELQQGDM----NPPTFD 128
           +L    K+       ++    L QGDM        F 
Sbjct: 116 VLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFG 152


>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid
           biosynthesis, isomerase, lysine biosy; 2.60A
           {Mycobacterium tuberculosis}
          Length = 290

 Score = 26.8 bits (60), Expect = 5.4
 Identities = 5/27 (18%), Positives = 6/27 (22%), Gaps = 1/27 (3%)

Query: 121 DMNPPTFDEPGVPEVNVDSEAPFTSVS 147
           DM        G   V         +V 
Sbjct: 136 DMGKANRLGAGEAVVG-GRRFHGLAVD 161


>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
           immunoglobulin-like D; 3.50A {Homo sapiens}
          Length = 317

 Score = 26.8 bits (59), Expect = 5.4
 Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 8/42 (19%)

Query: 124 PPTFDEPGVPEVNVDSEAPFT-------SVSNISW-KQGRQI 157
            P F E    EV  +               ++I W K  R+I
Sbjct: 7   GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI 48


>2j9o_A TLL2115 protein; penicillin-binding protein, hydrolase, lactamase,
           thioestera DD-peptidase; 1.50A {Synechococcus elongatus}
           PDB: 2jbf_A* 2j7v_A 2j8y_A*
          Length = 298

 Score = 26.3 bits (58), Expect = 9.1
 Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 6/43 (13%)

Query: 154 GRQILRQYLQEIGYTDTIIDVRSNRVRTLLGLNNNNNVTSDDQ 196
           G   L Q  QE G  +T+I+           +   N  +  D 
Sbjct: 136 GAAELNQQFQEWGLENTVIN------NPEPDMKGTNTTSPRDL 172


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.311    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0539    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,318,687
Number of extensions: 187405
Number of successful extensions: 355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 20
Length of query: 225
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 135
Effective length of database: 4,188,903
Effective search space: 565501905
Effective search space used: 565501905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.4 bits)