RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17136
         (225 letters)



>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId:
           1354]}
          Length = 68

 Score = 24.7 bits (54), Expect = 2.8
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 130 PGVPEVNVDSEAPFTSVSNISWKQGRQILRQYLQEIGYTDTII 172
            GV +V V  +     V           + Q + E+GY   +I
Sbjct: 26  SGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEVI 68


>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal
           domain {Salmonella typhimurium [TaxId: 90371]}
          Length = 368

 Score = 26.3 bits (57), Expect = 2.9
 Identities = 5/23 (21%), Positives = 8/23 (34%), Gaps = 3/23 (13%)

Query: 46  HFI---QHEWARFEMERSQWEVD 65
            +I   + E  R  M     E +
Sbjct: 341 AYIALRREEDDRVRMTPHPVEFE 363


>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
           (Solanum tuberosum) [TaxId: 4113]}
          Length = 364

 Score = 25.7 bits (55), Expect = 5.3
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 85  NLKHDLIRRIKMLEYALKQERAKYHQLKYGTELQQ 119
           N+    + R+K L    K++  +    +   E+Q 
Sbjct: 329 NVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQD 363


>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal
           domain {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 374

 Score = 25.6 bits (55), Expect = 6.3
 Identities = 4/26 (15%), Positives = 9/26 (34%), Gaps = 4/26 (15%)

Query: 44  ILHFI----QHEWARFEMERSQWEVD 65
           I  +I    ++E     +    +E  
Sbjct: 344 IETWISFKRENEIEPVNIRPHPYEFA 369


>d1mjta_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 346

 Score = 25.4 bits (56), Expect = 6.3
 Identities = 6/30 (20%), Positives = 14/30 (46%)

Query: 151 WKQGRQILRQYLQEIGYTDTIIDVRSNRVR 180
           +K+ +  +    +E  Y   II+ R + + 
Sbjct: 3   FKEAQAFIENMYKECHYETQIINKRLHDIE 32


>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal
           DNA-binding domain {Escherichia coli [TaxId: 562]}
          Length = 115

 Score = 24.4 bits (53), Expect = 7.3
 Identities = 4/34 (11%), Positives = 16/34 (47%)

Query: 140 EAPFTSVSNISWKQGRQILRQYLQEIGYTDTIID 173
             P+  ++N +  +   ++   +Q + +   +I+
Sbjct: 76  GTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIE 109


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 804,444
Number of extensions: 35525
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 11
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.7 bits)