BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17138
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F6R|A Chain A, Crystal Structure Of Bifunctional Coenzyme A Synthase (coa
Synthase): (18044849) From Mus Musculus At 1.70 A
Resolution
Length = 281
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 122/201 (60%), Gaps = 2/201 (0%)
Query: 13 VKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGTLRKPVQPKPHL 72
+ VN R+ N + L + + LL D +E EEDK+SSS+ R R LG L +P +P L
Sbjct: 13 MAVNRFRLENGKEELALYQIQLL-KDQSHNENEEDKVSSSSFRQRILGNLLQPPNERPEL 71
Query: 73 SPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDI 132
Y++GLTG SGKS++A+ L+ LGA +I+ D LGHRAY G Q V E FG DI
Sbjct: 72 PSGLYVLGLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDI 131
Query: 133 ALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEI-ARLSESHKVIVIEAAVL 191
DG+I+RK LG+ VF NK +M L +WP+I +EE+ +++ + VI+AA+L
Sbjct: 132 LHKDGTINRKVLGSRVFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAML 191
Query: 192 LSAKWQDQVHEIWVTFIPEQE 212
L A WQ VHE+W IPE E
Sbjct: 192 LEAGWQSMVHEVWTVVIPETE 212
>pdb|4I1U|A Chain A, Apo Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis
pdb|4I1U|B Chain B, Apo Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis
pdb|4I1V|A Chain A, Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis Bound To Adp
pdb|4I1V|B Chain B, Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis Bound To Adp
Length = 210
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Query: 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
Y IGLTGGI SGK+T+A GA L++ D + HR + + FG D
Sbjct: 10 YAIGLTGGIGSGKTTVADLFAARGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAAD 69
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKW 196
GS+DR ++ A++FS++D +L PLI A+ + E AR ++ VI + ++ S W
Sbjct: 70 GSLDRARMRALIFSDEDARRRLEAITHPLIRAETERE-ARDAQGPYVIFVVPLLVESRNW 128
Query: 197 QDQVHEIWVTFIP 209
+ + + V P
Sbjct: 129 KARCDRVLVVDCP 141
>pdb|2IF2|A Chain A, Crystal Structure Of The Putative Dephospho-Coa Kinase
From Aquifex Aeolicus, Northeast Structural Genomics
Target Qr72.
pdb|2IF2|B Chain B, Crystal Structure Of The Putative Dephospho-Coa Kinase
From Aquifex Aeolicus, Northeast Structural Genomics
Target Qr72.
pdb|2IF2|C Chain C, Crystal Structure Of The Putative Dephospho-Coa Kinase
From Aquifex Aeolicus, Northeast Structural Genomics
Target Qr72
Length = 204
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
Query: 79 IGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGS 138
IGLTG I GKST+A+ LGA +++ D+L H Y G + V + FG+ I +G+
Sbjct: 4 IGLTGNIGCGKSTVAQXFRELGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGN 63
Query: 139 IDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQD 198
IDRKKL IVF +++++ KL + + ++++ LSE + ++EA++L+
Sbjct: 64 IDRKKLADIVFKDEEKLRKLEEITHRALYKEIEKITKNLSED-TLFILEASLLVEKGTYK 122
Query: 199 QVHEIWVTFIP 209
++ V + P
Sbjct: 123 NYDKLIVVYAP 133
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 9/136 (6%)
Query: 78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
+IG+TG I +GKST+ + L+ GA ++N D++GH + + + ELFG + L D
Sbjct: 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLE---EVKEKLVELFGGSV-LED 69
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKW 196
G ++RKKL IVF +++ + KL + PL +V+E I + S +IVIEAA LL
Sbjct: 70 GKVNRKKLAGIVFESRENLKKLELLVHPLXKKRVQEIINKTS---GLIVIEAA-LLKRXG 125
Query: 197 QDQVHEIWVTFIPEQE 212
DQ+ + +T + +E
Sbjct: 126 LDQLCDHVITVVASRE 141
>pdb|1VHL|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHT|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VIY|A Chain A, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|B Chain B, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|C Chain C, Crystal Structure Of Dephospho-Coa Kinase
Length = 218
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
YI+ LTGGI SGKST+A LG +I+ D + + + G + + FG ++ D
Sbjct: 5 YIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAAD 64
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLI 166
G++ R+ L +F+N +E N LN + PLI
Sbjct: 65 GTLQRRALRERIFANPEEKNWLNALLHPLI 94
>pdb|1T3H|A Chain A, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|B Chain B, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|C Chain C, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
Length = 214
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
YI+ LTGGI SGKST+A LG +I+ D + + + G + + FG + D
Sbjct: 3 YIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANXIAAD 62
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLI 166
G++ R+ L +F+N +E N LN + PLI
Sbjct: 63 GTLQRRALRERIFANPEEKNWLNALLHPLI 92
>pdb|1N3B|A Chain A, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|B Chain B, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|C Chain C, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
Length = 216
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
YI+ LTGGI SGKST+A LG +I+ D + + + G + + FG + D
Sbjct: 3 YIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANXIAAD 62
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLI 166
G++ R+ L +F+N +E N LN + PLI
Sbjct: 63 GTLQRRALRERIFANPEEKNWLNALLHPLI 92
>pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp
Length = 206
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%)
Query: 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
YI+GLTGGI SGK+TIA LG L++ D + + + E FG I
Sbjct: 3 YIVGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQ 62
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVI 186
G ++R L VF++ ++ LN + P I ++K+++A + + + V+
Sbjct: 63 GELNRAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLAEQTAPYTLFVV 112
>pdb|1UF9|A Chain A, Crystal Structure Of Tt1252 From Thermus Thermophilus
pdb|1UF9|B Chain B, Crystal Structure Of Tt1252 From Thermus Thermophilus
pdb|1UF9|C Chain C, Crystal Structure Of Tt1252 From Thermus Thermophilus
Length = 203
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 7/142 (4%)
Query: 71 HLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGE 130
H + +P IIG+TG I SGKST+A L + G +++ D L RA + + ++ LF E
Sbjct: 3 HEAKHPIIIGITGNIGSGKSTVAALLRSWGYPVLDLDALAARARE---NKEEELKRLFPE 59
Query: 131 DIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAV 190
A+ G +DR+ L +VFS+ + + L + P + + EE++ ++ +E +
Sbjct: 60 --AVVGGRLDRRALARLVFSDPERLKALEAVVHPEVRRLLXEELS--RLEAPLVFLEIPL 115
Query: 191 LLSAKWQDQVHEIWVTFIPEQE 212
L W+ ++H + P +E
Sbjct: 116 LFEKGWEGRLHGTLLVAAPLEE 137
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 7/46 (15%)
Query: 73 SPYPYIIGLTGGIASGKSTIAKYL-ETLG--AGLINCDQ----LGH 111
+P P++IG+ GG ASGK+T+A+ L TLG L+ D LGH
Sbjct: 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGH 48
>pdb|2ZS7|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Citrate Anion
pdb|2ZS8|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Co- Crystallized With Adp
pdb|2ZS9|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Adp And Pantothenate
pdb|2ZSA|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Adp And Phosphopantothenate
pdb|2ZSB|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Adp, Obtained Through Soaking
Of Native Enzyme Crystals With The Ligand
pdb|2ZSD|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Coenzyme A
pdb|2ZSE|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Amppcp And Pantothenate
pdb|2ZSF|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Atp And Adp
pdb|3AEZ|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp And Phosphopantothenate
pdb|3AF0|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp And Pantothenate
pdb|3AF1|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp
pdb|3AF2|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Amppcp
pdb|3AF3|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gmppcp And Pantothenate
pdb|3AF4|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gmppcp
pdb|3AVP|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Pantothenol
Length = 312
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 74 PYPYIIGLTGGIASGKSTIAKYLETLGA 101
P P+IIG+ G +A GKST A+ L+ L A
Sbjct: 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115
>pdb|2GES|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative, Form-I
(Rt)
pdb|2GET|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative, Form-I
(Lt)
pdb|2GEU|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative,
Form-Ii (Rt)
pdb|2GEV|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative,
Form-Ii (Lt)
Length = 312
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 74 PYPYIIGLTGGIASGKSTIAKYLETLGA 101
P P+IIG+ G +A GKST A+ L+ L A
Sbjct: 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115
>pdb|3AVO|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Pantothenate
pdb|3AVQ|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With N9-Pan
Length = 322
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 74 PYPYIIGLTGGIASGKSTIAKYLETLGA 101
P P+IIG+ G +A GKST A+ L+ L A
Sbjct: 98 PVPFIIGVAGSVAVGKSTTARVLQALLA 125
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 73 SPYPYIIGLTGGIASGKSTIA-KYLETLG 100
S P++IG++GG ASGKST+ K +E LG
Sbjct: 22 SMRPFLIGVSGGTASGKSTVCEKIMELLG 50
>pdb|3TQC|A Chain A, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
pdb|3TQC|B Chain B, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
Length = 321
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99
+P+P + PYIIG+ G +A GKST ++ L+ L
Sbjct: 86 KPEPKV---PYIIGIAGSVAVGKSTTSRVLKAL 115
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 76 PYIIGLTGGIASGKSTI-AKYLETLGAGLINCDQ 108
P++IG++GG ASGKS++ AK ++ LG ++ Q
Sbjct: 20 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQ 53
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 76 PYIIGLTGGIASGKSTI-AKYLETLGAGLINCDQ 108
P++IG++GG ASGKS++ AK ++ LG ++ Q
Sbjct: 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQ 55
>pdb|1SQ5|A Chain A, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|B Chain B, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|C Chain C, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|D Chain D, Crystal Structure Of E. Coli Pantothenate Kinase
Length = 308
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRE 126
PYII + G +A GKST A+ L+ L + ++ D NQV++E
Sbjct: 80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKE 130
>pdb|1ESM|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
Length = 316
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRE 126
PYII + G +A GKST A+ L+ L + ++ D NQV++E
Sbjct: 88 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKE 138
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 70 PHLSP--YPYIIGLTGGIASGKSTIAKYLETL------GAGLINCDQLGHRAYD-VGTRG 120
P+++P P+II L G SGK+T A L GL+ D AYD + G
Sbjct: 96 PNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLG 155
Query: 121 NQVVRELFGE 130
NQ+ +++GE
Sbjct: 156 NQIGVQVYGE 165
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 70 PHLSP--YPYIIGLTGGIASGKSTIAKYLETL------GAGLINCDQLGHRAYD-VGTRG 120
P+++P P+II L G SGK+T A L GL+ D AYD + G
Sbjct: 89 PNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLG 148
Query: 121 NQVVRELFGE 130
NQ+ +++GE
Sbjct: 149 NQIGVQVYGE 158
>pdb|3TN4|A Chain A, Crystal Structure Of Gkap Mutant G209d From Geobacillus
Kaustophilus Hta426
pdb|3TN4|B Chain B, Crystal Structure Of Gkap Mutant G209d From Geobacillus
Kaustophilus Hta426
Length = 360
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLG----HRAYDVGTRGNQ--VVRELFGE 130
++ +TGG G+ ++A+ +ET+ G + +QLG H + G G Q V R F E
Sbjct: 20 HMASMTGGQQMGRGSMAEMVETV-CGPVPVEQLGKTLIHEHFLFGYPGFQGDVTRGTFRE 78
Query: 131 DIAL 134
D +L
Sbjct: 79 DESL 82
>pdb|3TNB|A Chain A, Crystal Structure Of Gkap Mutant G209dR230H FROM
GEOBACILLUS Kaustophilus Hta426
pdb|3TNB|B Chain B, Crystal Structure Of Gkap Mutant G209dR230H FROM
GEOBACILLUS Kaustophilus Hta426
Length = 360
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLG----HRAYDVGTRGNQ--VVRELFGE 130
++ +TGG G+ ++A+ +ET+ G + +QLG H + G G Q V R F E
Sbjct: 20 HMASMTGGQQMGRGSMAEMVETV-CGPVPVEQLGKTLIHEHFLFGYPGFQGDVTRGTFRE 78
Query: 131 DIAL 134
D +L
Sbjct: 79 DESL 82
>pdb|3TN5|A Chain A, Crystal Structure Of Gkap Mutant Y99l From Geobacillus
Kaustophilus Hta426
pdb|3TN5|B Chain B, Crystal Structure Of Gkap Mutant Y99l From Geobacillus
Kaustophilus Hta426
Length = 360
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLG----HRAYDVGTRGNQ--VVRELFGE 130
++ +TGG G+ ++A+ +ET+ G + +QLG H + G G Q V R F E
Sbjct: 20 HMASMTGGQQMGRGSMAEMVETV-CGPVPVEQLGKTLIHEHFLFGYPGFQGDVTRGTFRE 78
Query: 131 DIAL 134
D +L
Sbjct: 79 DESL 82
>pdb|3TN6|A Chain A, Crystal Structure Of Gkap Mutant R230h From Geobacillus
Kaustophilus Hta426
pdb|3TN6|B Chain B, Crystal Structure Of Gkap Mutant R230h From Geobacillus
Kaustophilus Hta426
Length = 360
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLG----HRAYDVGTRGNQ--VVRELFGE 130
++ +TGG G+ ++A+ +ET+ G + +QLG H + G G Q V R F E
Sbjct: 20 HMASMTGGQQMGRGSMAEMVETV-CGPVPVEQLGKTLIHEHFLFGYPGFQGDVTRGTFRE 78
Query: 131 DIAL 134
D +L
Sbjct: 79 DESL 82
>pdb|3TN3|A Chain A, Crystal Structure Of Gkap From Geobacillus Kaustophilus
Hta426
pdb|3TN3|B Chain B, Crystal Structure Of Gkap From Geobacillus Kaustophilus
Hta426
Length = 360
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLG----HRAYDVGTRGNQ--VVRELFGE 130
++ +TGG G+ ++A+ +ET+ G + +QLG H + G G Q V R F E
Sbjct: 20 HMASMTGGQQMGRGSMAEMVETV-CGPVPVEQLGKTLIHEHFLFGYPGFQGDVTRGTFRE 78
Query: 131 DIAL 134
D +L
Sbjct: 79 DESL 82
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 31/136 (22%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
+IG+ G SGKST+ K ++ R Y + G ++ G D+AL D
Sbjct: 33 VIGIVGRAGSGKSTLTKLIQ--------------RFY-IPENGQVLID---GHDLALADP 74
Query: 138 SIDRKKLGAI----VFSNKDEMNKLNQA---------IWPLILAQVKEEIARLSESHKVI 184
+ R+++G + V N+ ++ ++ A I+ LA + I+ L E + I
Sbjct: 75 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTI 134
Query: 185 VIEAAVLLSAKWQDQV 200
V E LS + ++
Sbjct: 135 VGEQGAGLSGGQRQRI 150
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETL-GAGLINCDQLGHRA 113
P + L G SGKSTIAK L+ L G G ++ H++
Sbjct: 5 PITVXLLGSGESGKSTIAKQLKILFGGGFPEQERATHKS 43
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 31/136 (22%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
+IG+ G SGKST+ K ++ R Y + G ++ G D+AL D
Sbjct: 33 VIGIVGRSGSGKSTLTKLIQ--------------RFY-IPENGQVLID---GHDLALADP 74
Query: 138 SIDRKKLGAI----VFSNKDEMNKLNQA---------IWPLILAQVKEEIARLSESHKVI 184
+ R+++G + V N+ ++ ++ A I+ LA + I+ L E + I
Sbjct: 75 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTI 134
Query: 185 VIEAAVLLSAKWQDQV 200
V E LS + ++
Sbjct: 135 VGEQGAGLSGGQRQRI 150
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 31/136 (22%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
+IG+ G SGKST+ K ++ R Y + G ++ G D+AL D
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQ--------------RFY-IPENGQVLID---GHDLALADP 72
Query: 138 SIDRKKLGAI----VFSNKDEMNKLNQA---------IWPLILAQVKEEIARLSESHKVI 184
+ R+++G + V N+ ++ ++ A I+ LA + I+ L E + I
Sbjct: 73 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTI 132
Query: 185 VIEAAVLLSAKWQDQV 200
V E LS + ++
Sbjct: 133 VGEQGAGLSGGQRQRI 148
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 31/136 (22%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
+IG+ G SGKST+ K ++ R Y + G ++ G D+AL D
Sbjct: 37 VIGIVGRSGSGKSTLTKLIQ--------------RFY-IPENGQVLID---GHDLALADP 78
Query: 138 SIDRKKLGAI----VFSNKDEMNKLNQA---------IWPLILAQVKEEIARLSESHKVI 184
+ R+++G + V N+ ++ ++ A I+ LA + I+ L E + I
Sbjct: 79 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTI 138
Query: 185 VIEAAVLLSAKWQDQV 200
V E LS + ++
Sbjct: 139 VGEQGAGLSGGQRQRI 154
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 31/136 (22%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
+IG+ G SGKST+ K ++ R Y + G ++ G D+AL D
Sbjct: 37 VIGIVGRSGSGKSTLTKLIQ--------------RFY-IPENGQVLID---GHDLALADP 78
Query: 138 SIDRKKLGAI----VFSNKDEMNKLNQA---------IWPLILAQVKEEIARLSESHKVI 184
+ R+++G + V N+ ++ ++ A I+ LA + I+ L E + I
Sbjct: 79 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTI 138
Query: 185 VIEAAVLLSAKWQDQV 200
V E LS + ++
Sbjct: 139 VGEQGAGLSGGQRQRI 154
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 31/136 (22%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
+IG+ G SGKST+ K ++ R Y + G ++ G D+AL D
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQ--------------RFY-IPENGQVLID---GHDLALADP 72
Query: 138 SIDRKKLGAI----VFSNKDEMNKLNQA---------IWPLILAQVKEEIARLSESHKVI 184
+ R+++G + V N+ ++ ++ A I+ LA + I+ L E + I
Sbjct: 73 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTI 132
Query: 185 VIEAAVLLSAKWQDQV 200
V E LS + ++
Sbjct: 133 VGEQGAGLSGGQRQRI 148
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 31/136 (22%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
+IG+ G SGKST+ K ++ R Y + G ++ G D+AL D
Sbjct: 37 VIGIVGRSGSGKSTLTKLIQ--------------RFY-IPENGQVLID---GHDLALADP 78
Query: 138 SIDRKKLGAI----VFSNKDEMNKLNQA---------IWPLILAQVKEEIARLSESHKVI 184
+ R+++G + V N+ ++ ++ A I+ LA + I+ L E + I
Sbjct: 79 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTI 138
Query: 185 VIEAAVLLSAKWQDQV 200
V E LS + ++
Sbjct: 139 VGEQGAGLSGGQRQRI 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,353,122
Number of Sequences: 62578
Number of extensions: 258736
Number of successful extensions: 534
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 41
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)