Query psy17138
Match_columns 212
No_of_seqs 274 out of 2181
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 22:51:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01121 CoaE: Dephospho-CoA k 100.0 1.9E-31 4E-36 211.2 11.8 134 77-211 1-134 (180)
2 KOG3220|consensus 100.0 2.1E-30 4.5E-35 203.5 11.1 137 76-212 1-138 (225)
3 PLN02422 dephospho-CoA kinase 100.0 1.6E-29 3.5E-34 206.8 11.6 135 77-211 2-137 (232)
4 PRK14732 coaE dephospho-CoA ki 100.0 4.4E-29 9.6E-34 200.3 12.0 133 78-211 1-133 (196)
5 PRK00081 coaE dephospho-CoA ki 100.0 6.4E-29 1.4E-33 199.2 12.4 135 76-211 2-136 (194)
6 PRK14734 coaE dephospho-CoA ki 100.0 2.5E-28 5.3E-33 196.7 13.3 137 76-212 1-138 (200)
7 PTZ00451 dephospho-CoA kinase; 100.0 1.8E-28 3.8E-33 202.3 12.7 136 76-211 1-148 (244)
8 PRK14730 coaE dephospho-CoA ki 100.0 1.9E-28 4E-33 196.7 12.0 134 77-211 2-137 (195)
9 PRK14731 coaE dephospho-CoA ki 100.0 5.9E-28 1.3E-32 195.6 13.2 138 74-211 3-145 (208)
10 PRK14733 coaE dephospho-CoA ki 100.0 7.2E-28 1.6E-32 193.9 12.9 134 74-211 4-140 (204)
11 cd02022 DPCK Dephospho-coenzym 100.0 9.6E-28 2.1E-32 190.0 12.4 133 78-211 1-133 (179)
12 COG0237 CoaE Dephospho-CoA kin 99.9 3.7E-27 7.9E-32 189.3 11.9 134 76-211 2-135 (201)
13 TIGR00152 dephospho-CoA kinase 99.9 4.5E-27 9.6E-32 187.5 11.2 134 78-211 1-135 (188)
14 PRK03333 coaE dephospho-CoA ki 99.9 1.2E-25 2.7E-30 197.8 12.6 135 76-211 1-135 (395)
15 COG1126 GlnQ ABC-type polar am 99.7 4.1E-17 8.9E-22 130.5 7.5 155 48-208 4-211 (240)
16 COG4555 NatA ABC-type Na+ tran 99.7 1E-16 2.2E-21 127.0 6.0 154 49-207 4-207 (245)
17 COG1116 TauB ABC-type nitrate/ 99.6 6.7E-16 1.5E-20 126.2 7.2 156 48-209 5-207 (248)
18 COG1120 FepC ABC-type cobalami 99.6 7.4E-16 1.6E-20 127.6 7.3 142 64-207 16-213 (258)
19 COG1019 Predicted nucleotidylt 99.6 6.6E-16 1.4E-20 116.2 5.1 54 1-60 95-148 (158)
20 COG1125 OpuBA ABC-type proline 99.6 1.5E-15 3.3E-20 124.2 6.4 154 49-208 4-211 (309)
21 COG1131 CcmA ABC-type multidru 99.6 2.5E-15 5.3E-20 127.7 6.6 154 49-207 7-211 (293)
22 cd02164 PPAT_CoAS phosphopante 99.5 3.4E-15 7.4E-20 113.9 4.2 51 1-56 92-142 (143)
23 COG1121 ZnuC ABC-type Mn/Zn tr 99.5 1.5E-14 3.2E-19 119.4 7.6 153 49-207 7-213 (254)
24 COG1124 DppF ABC-type dipeptid 99.5 8.8E-15 1.9E-19 119.0 6.0 156 49-207 6-216 (252)
25 COG1136 SalX ABC-type antimicr 99.5 8.9E-15 1.9E-19 119.0 5.7 156 49-207 4-216 (226)
26 COG3839 MalK ABC-type sugar tr 99.5 1.7E-14 3.7E-19 123.7 7.1 155 47-207 4-208 (338)
27 PRK13537 nodulation ABC transp 99.5 1.7E-14 3.6E-19 123.4 5.8 155 47-207 8-212 (306)
28 COG1127 Ttg2A ABC-type transpo 99.5 3.2E-14 7E-19 115.5 7.0 153 47-207 9-220 (263)
29 COG3842 PotA ABC-type spermidi 99.5 3.2E-14 7E-19 122.6 7.0 155 47-207 6-211 (352)
30 COG1135 AbcC ABC-type metal io 99.5 3.4E-14 7.4E-19 119.1 6.6 158 49-208 4-217 (339)
31 COG4608 AppF ABC-type oligopep 99.5 5.4E-14 1.2E-18 116.3 7.2 144 62-208 25-185 (268)
32 COG1118 CysA ABC-type sulfate/ 99.5 6E-14 1.3E-18 117.6 7.3 153 49-207 5-212 (345)
33 PLN02388 phosphopantetheine ad 99.5 2.1E-14 4.6E-19 112.7 4.3 54 1-59 112-165 (177)
34 PRK13536 nodulation factor exp 99.5 2.8E-14 6.2E-19 123.6 4.8 155 47-207 42-246 (340)
35 PRK07667 uridine kinase; Provi 99.5 8.3E-15 1.8E-19 117.3 1.4 126 74-211 15-150 (193)
36 COG1117 PstB ABC-type phosphat 99.5 3.9E-14 8.5E-19 113.3 5.0 153 48-207 9-222 (253)
37 cd03215 ABC_Carb_Monos_II This 99.4 1.3E-13 2.8E-18 109.2 6.3 137 65-207 15-178 (182)
38 COG3638 ABC-type phosphate/pho 99.4 7.2E-14 1.6E-18 113.2 4.6 156 48-208 5-223 (258)
39 TIGR01188 drrA daunorubicin re 99.4 1.1E-13 2.5E-18 118.0 6.0 142 64-207 7-198 (302)
40 TIGR03522 GldA_ABC_ATP gliding 99.4 8.2E-14 1.8E-18 118.8 4.8 152 49-207 5-206 (301)
41 TIGR02314 ABC_MetN D-methionin 99.4 6.7E-14 1.4E-18 121.3 4.3 157 49-207 4-215 (343)
42 cd03226 ABC_cobalt_CbiO_domain 99.4 1.4E-13 3.1E-18 110.8 5.9 142 64-207 14-200 (205)
43 cd03246 ABCC_Protease_Secretio 99.4 2.9E-13 6.2E-18 106.4 6.0 137 64-207 16-169 (173)
44 COG4586 ABC-type uncharacteriz 99.4 1.7E-13 3.6E-18 113.2 4.8 146 61-208 35-232 (325)
45 PRK09536 btuD corrinoid ABC tr 99.4 9.2E-14 2E-18 122.7 3.4 153 49-207 6-213 (402)
46 TIGR01288 nodI ATP-binding ABC 99.4 2.3E-13 5E-18 116.1 5.7 154 48-207 6-209 (303)
47 cd03259 ABC_Carb_Solutes_like 99.4 3.7E-13 8.1E-18 109.0 6.4 153 49-207 3-205 (213)
48 cd03293 ABC_NrtD_SsuB_transpor 99.4 2.4E-13 5.2E-18 110.7 4.9 142 64-207 18-206 (220)
49 cd03216 ABC_Carb_Monos_I This 99.4 1.6E-13 3.5E-18 107.0 3.7 135 65-207 15-156 (163)
50 cd03238 ABC_UvrA The excision 99.4 8.1E-13 1.8E-17 104.4 7.6 142 60-208 5-163 (176)
51 PRK11153 metN DL-methionine tr 99.4 2.4E-13 5.2E-18 118.0 4.9 157 49-207 4-215 (343)
52 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.4 3.6E-13 7.9E-18 109.3 5.6 141 64-207 18-214 (218)
53 COG1122 CbiO ABC-type cobalt t 99.4 5.2E-13 1.1E-17 109.9 6.5 144 63-208 17-214 (235)
54 PRK06696 uridine kinase; Valid 99.4 1.9E-13 4E-18 111.8 3.8 129 73-211 19-158 (223)
55 cd03225 ABC_cobalt_CbiO_domain 99.4 4.7E-13 1E-17 108.2 6.0 141 65-207 16-208 (211)
56 TIGR00017 cmk cytidylate kinas 99.4 3.9E-12 8.5E-17 103.7 11.4 133 77-211 3-149 (217)
57 COG1123 ATPase components of v 99.4 5.1E-13 1.1E-17 120.2 6.7 157 48-207 282-504 (539)
58 cd03217 ABC_FeS_Assembly ABC-t 99.4 7.3E-13 1.6E-17 106.5 6.9 140 64-207 14-179 (200)
59 cd03266 ABC_NatA_sodium_export 99.4 5E-13 1.1E-17 108.5 5.9 142 64-207 19-210 (218)
60 PRK11432 fbpC ferric transport 99.4 2.5E-13 5.5E-18 118.1 4.2 156 46-207 6-211 (351)
61 cd03222 ABC_RNaseL_inhibitor T 99.4 4.6E-13 1E-17 105.9 5.3 120 71-208 20-147 (177)
62 COG2274 SunT ABC-type bacterio 99.4 3E-13 6.4E-18 126.6 4.6 155 46-208 471-682 (709)
63 cd03218 ABC_YhbG The ABC trans 99.4 8.1E-13 1.8E-17 108.3 6.7 142 64-207 14-207 (232)
64 cd03265 ABC_DrrA DrrA is the A 99.4 6E-13 1.3E-17 108.3 5.8 142 64-207 14-206 (220)
65 TIGR00960 3a0501s02 Type II (G 99.4 5.5E-13 1.2E-17 108.2 5.5 141 65-207 18-212 (216)
66 cd03261 ABC_Org_Solvent_Resist 99.4 5.3E-13 1.1E-17 109.7 5.4 142 64-207 14-211 (235)
67 cd03230 ABC_DR_subfamily_A Thi 99.4 8.1E-13 1.8E-17 103.8 5.9 137 65-207 15-169 (173)
68 PRK11650 ugpC glycerol-3-phosp 99.4 3E-13 6.4E-18 117.9 3.7 155 48-207 5-209 (356)
69 cd03214 ABC_Iron-Siderophores_ 99.4 5.2E-13 1.1E-17 105.6 4.6 141 65-207 14-172 (180)
70 COG4152 ABC-type uncharacteriz 99.4 6.9E-13 1.5E-17 108.1 5.4 154 48-207 4-204 (300)
71 TIGR02673 FtsE cell division A 99.4 9.5E-13 2.1E-17 106.6 6.2 142 64-207 16-211 (214)
72 TIGR03265 PhnT2 putative 2-ami 99.4 3.6E-13 7.7E-18 117.3 3.8 154 48-207 6-209 (353)
73 cd03228 ABCC_MRP_Like The MRP 99.4 9E-13 2E-17 103.4 5.7 134 64-207 16-168 (171)
74 TIGR03258 PhnT 2-aminoethylpho 99.4 4.3E-13 9.3E-18 117.1 4.1 155 47-207 6-213 (362)
75 COG3840 ThiQ ABC-type thiamine 99.4 2.5E-12 5.4E-17 100.8 7.8 136 70-207 19-204 (231)
76 cd03223 ABCD_peroxisomal_ALDP 99.4 1.6E-12 3.4E-17 101.7 6.8 135 65-207 16-161 (166)
77 cd02026 PRK Phosphoribulokinas 99.4 4.6E-13 1E-17 112.7 4.0 122 78-212 1-128 (273)
78 TIGR01186 proV glycine betaine 99.4 6.4E-13 1.4E-17 116.0 4.8 141 65-207 8-204 (363)
79 PRK05480 uridine/cytidine kina 99.4 1.9E-12 4.1E-17 104.6 7.2 129 73-212 3-138 (209)
80 TIGR02211 LolD_lipo_ex lipopro 99.3 1.1E-12 2.5E-17 106.6 5.8 141 64-207 19-215 (221)
81 COG1134 TagH ABC-type polysacc 99.3 2E-12 4.2E-17 105.5 7.1 145 62-208 39-222 (249)
82 cd03258 ABC_MetN_methionine_tr 99.3 1.4E-12 3.1E-17 106.9 6.4 157 49-207 4-215 (233)
83 cd03229 ABC_Class3 This class 99.3 3E-13 6.4E-18 106.8 2.1 139 65-207 15-175 (178)
84 PRK11248 tauB taurine transpor 99.3 9.6E-13 2.1E-17 109.7 5.3 153 49-207 4-203 (255)
85 PRK10851 sulfate/thiosulfate t 99.3 5E-13 1.1E-17 116.4 3.7 153 49-207 5-211 (353)
86 cd03235 ABC_Metallic_Cations A 99.3 8.4E-13 1.8E-17 106.9 4.8 141 65-207 14-206 (213)
87 cd03296 ABC_CysA_sulfate_impor 99.3 1E-12 2.3E-17 108.3 5.4 153 49-207 5-211 (239)
88 cd03301 ABC_MalK_N The N-termi 99.3 1.3E-12 2.9E-17 105.7 5.8 142 64-207 14-205 (213)
89 COG0444 DppD ABC-type dipeptid 99.3 1.8E-12 3.9E-17 109.5 6.8 159 48-208 3-229 (316)
90 PRK11247 ssuB aliphatic sulfon 99.3 7.8E-13 1.7E-17 110.4 4.5 155 47-207 13-208 (257)
91 PRK11000 maltose/maltodextrin 99.3 6E-13 1.3E-17 116.6 3.9 154 48-207 5-208 (369)
92 cd03219 ABC_Mj1267_LivG_branch 99.3 1.9E-12 4E-17 106.4 6.6 141 65-207 15-217 (236)
93 cd03237 ABC_RNaseL_inhibitor_d 99.3 2.6E-12 5.6E-17 106.7 7.4 136 70-207 19-190 (246)
94 PRK11022 dppD dipeptide transp 99.3 7.7E-13 1.7E-17 114.1 4.4 158 49-208 6-229 (326)
95 PRK13637 cbiO cobalt transport 99.3 1.3E-12 2.7E-17 110.8 5.5 142 64-207 21-219 (287)
96 PRK13638 cbiO cobalt transport 99.3 1.5E-12 3.2E-17 109.4 5.9 153 49-207 4-210 (271)
97 cd03262 ABC_HisP_GlnQ_permease 99.3 2.2E-12 4.7E-17 104.3 6.6 141 65-207 15-209 (213)
98 COG0411 LivG ABC-type branched 99.3 5.7E-13 1.2E-17 108.5 3.0 155 48-208 6-225 (250)
99 cd03232 ABC_PDR_domain2 The pl 99.3 1.3E-12 2.9E-17 104.3 5.0 139 65-207 22-183 (192)
100 PRK10938 putative molybdenum t 99.3 2.5E-12 5.3E-17 116.5 7.3 154 48-207 5-209 (490)
101 COG4987 CydC ABC-type transpor 99.3 4E-12 8.7E-17 113.3 8.4 156 46-207 336-546 (573)
102 COG1137 YhbG ABC-type (unclass 99.3 2.5E-13 5.3E-18 107.8 0.6 155 48-208 6-214 (243)
103 cd03224 ABC_TM1139_LivF_branch 99.3 1.4E-12 3E-17 106.1 5.0 142 64-207 14-206 (222)
104 PRK15093 antimicrobial peptide 99.3 1.6E-12 3.4E-17 112.3 5.6 157 49-207 6-233 (330)
105 cd03295 ABC_OpuCA_Osmoprotecti 99.3 2E-12 4.4E-17 106.7 6.0 141 65-207 16-210 (242)
106 PRK10584 putative ABC transpor 99.3 1.7E-12 3.7E-17 106.1 5.5 157 48-207 8-220 (228)
107 cd03269 ABC_putative_ATPase Th 99.3 1.8E-12 4E-17 104.7 5.5 141 65-207 15-202 (210)
108 PRK09452 potA putrescine/sperm 99.3 7.4E-13 1.6E-17 116.1 3.4 155 47-207 15-219 (375)
109 PRK13543 cytochrome c biogenes 99.3 3.4E-12 7.3E-17 103.6 7.1 156 48-209 13-213 (214)
110 cd03268 ABC_BcrA_bacitracin_re 99.3 2.1E-12 4.6E-17 104.2 5.8 142 64-207 14-200 (208)
111 cd03257 ABC_NikE_OppD_transpor 99.3 2.7E-12 5.8E-17 104.8 6.3 157 49-207 4-220 (228)
112 PRK11264 putative amino-acid A 99.3 2.9E-12 6.2E-17 106.2 6.5 153 49-207 6-218 (250)
113 COG4175 ProV ABC-type proline/ 99.3 5.5E-12 1.2E-16 106.3 8.0 141 64-206 42-238 (386)
114 cd03233 ABC_PDR_domain1 The pl 99.3 2.8E-12 6E-17 103.3 5.9 158 48-207 5-194 (202)
115 PRK11607 potG putrescine trans 99.3 1E-12 2.2E-17 115.4 3.6 155 47-207 20-224 (377)
116 cd03292 ABC_FtsE_transporter F 99.3 2E-12 4.2E-17 104.7 4.9 142 64-207 15-210 (214)
117 PRK14250 phosphate ABC transpo 99.3 2.6E-12 5.7E-17 106.1 5.7 153 49-207 6-206 (241)
118 cd03256 ABC_PhnC_transporter A 99.3 4.8E-12 1E-16 104.2 7.2 142 64-207 15-219 (241)
119 TIGR01184 ntrCD nitrate transp 99.3 3.6E-12 7.8E-17 104.6 6.2 139 67-207 2-189 (230)
120 PRK10895 lipopolysaccharide AB 99.3 2.8E-12 6.1E-17 105.7 5.6 153 49-207 6-211 (241)
121 cd03263 ABC_subfamily_A The AB 99.3 3.4E-12 7.4E-17 103.7 6.0 141 64-207 16-206 (220)
122 PRK10070 glycine betaine trans 99.3 1.8E-12 3.9E-17 114.5 4.6 142 64-207 42-239 (400)
123 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.3 2.9E-12 6.3E-17 104.8 5.5 153 49-207 25-216 (224)
124 TIGR03411 urea_trans_UrtD urea 99.3 2.8E-12 6.1E-17 105.8 5.1 152 49-207 5-216 (242)
125 cd03247 ABCC_cytochrome_bd The 99.3 4E-12 8.7E-17 100.3 5.8 137 65-207 17-170 (178)
126 PRK11308 dppF dipeptide transp 99.3 2.9E-12 6.3E-17 110.6 5.3 159 48-208 7-230 (327)
127 PRK13647 cbiO cobalt transport 99.3 2.6E-12 5.6E-17 108.2 4.9 154 49-207 7-212 (274)
128 PRK10762 D-ribose transporter 99.3 3.6E-12 7.8E-17 115.8 6.2 153 49-207 7-215 (501)
129 COG4619 ABC-type uncharacteriz 99.3 1.9E-11 4.2E-16 94.7 9.2 143 64-208 17-209 (223)
130 PRK13641 cbiO cobalt transport 99.3 3E-12 6.5E-17 108.5 5.2 157 49-207 5-219 (287)
131 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.3 2.3E-12 5E-17 98.5 4.1 120 65-207 15-141 (144)
132 PRK11300 livG leucine/isoleuci 99.3 4.1E-12 8.8E-17 105.6 5.9 154 48-207 7-228 (255)
133 PRK11231 fecE iron-dicitrate t 99.3 2.1E-12 4.6E-17 107.5 4.1 153 49-207 5-212 (255)
134 PRK10908 cell division protein 99.3 4E-12 8.6E-17 103.6 5.6 142 64-207 16-211 (222)
135 TIGR03608 L_ocin_972_ABC putat 99.3 3.2E-12 6.8E-17 102.9 4.9 140 64-206 12-206 (206)
136 cd03298 ABC_ThiQ_thiamine_tran 99.3 4.2E-12 9.1E-17 102.7 5.6 138 68-207 16-203 (211)
137 PRK15079 oligopeptide ABC tran 99.3 2.5E-12 5.4E-17 111.1 4.5 144 63-208 34-237 (331)
138 PRK11831 putative ABC transpor 99.3 2.8E-12 6.2E-17 107.6 4.8 154 48-207 9-218 (269)
139 TIGR02315 ABC_phnC phosphonate 99.3 7E-12 1.5E-16 103.4 7.0 142 64-207 16-220 (243)
140 PRK10619 histidine/lysine/argi 99.3 3.8E-12 8.2E-17 106.1 5.4 155 47-207 6-226 (257)
141 TIGR03410 urea_trans_UrtE urea 99.3 4.8E-12 1E-16 103.6 5.9 142 64-207 14-206 (230)
142 PRK07429 phosphoribulokinase; 99.3 1.8E-12 4E-17 111.6 3.5 126 73-211 5-136 (327)
143 PRK15439 autoinducer 2 ABC tra 99.3 2.7E-12 5.8E-17 116.9 4.8 155 47-207 12-214 (510)
144 TIGR03864 PQQ_ABC_ATP ABC tran 99.3 6.8E-12 1.5E-16 103.2 6.8 140 65-207 16-206 (236)
145 PRK13650 cbiO cobalt transport 99.3 2.4E-12 5.2E-17 108.7 4.1 155 49-207 7-214 (279)
146 cd03294 ABC_Pro_Gly_Bertaine T 99.3 4.6E-12 1E-16 106.4 5.8 142 64-207 38-235 (269)
147 PRK13643 cbiO cobalt transport 99.3 4.3E-12 9.4E-17 107.6 5.6 142 64-207 20-218 (288)
148 PRK09473 oppD oligopeptide tra 99.3 2.2E-12 4.7E-17 111.4 3.8 160 46-207 12-236 (330)
149 PRK11629 lolD lipoprotein tran 99.3 4.7E-12 1E-16 104.0 5.6 156 49-207 8-219 (233)
150 cd03267 ABC_NatA_like Similar 99.3 6.9E-12 1.5E-16 103.3 6.6 142 64-207 35-228 (236)
151 PRK09493 glnQ glutamine ABC tr 99.3 6.1E-12 1.3E-16 103.7 5.9 142 64-207 15-210 (240)
152 PRK09700 D-allose transporter 99.3 5E-12 1.1E-16 115.1 5.9 154 48-207 7-219 (510)
153 PRK13649 cbiO cobalt transport 99.3 5.8E-12 1.3E-16 106.3 5.9 142 64-207 21-219 (280)
154 PRK13634 cbiO cobalt transport 99.3 4.3E-12 9.3E-17 107.7 5.1 157 49-207 5-220 (290)
155 PRK13548 hmuV hemin importer A 99.3 4E-12 8.7E-17 106.1 4.8 142 64-207 16-215 (258)
156 PRK10253 iron-enterobactin tra 99.3 4E-12 8.6E-17 106.5 4.8 155 47-207 8-218 (265)
157 TIGR03415 ABC_choXWV_ATP choli 99.3 4.3E-12 9.4E-17 111.4 5.1 142 64-207 38-239 (382)
158 COG0572 Udk Uridine kinase [Nu 99.3 6.9E-12 1.5E-16 101.2 5.9 128 74-212 6-140 (218)
159 PRK13651 cobalt transporter AT 99.3 4.1E-12 8.9E-17 108.6 4.8 157 49-207 5-239 (305)
160 TIGR03740 galliderm_ABC gallid 99.3 5.8E-12 1.3E-16 102.7 5.5 141 65-207 15-198 (223)
161 PRK11144 modC molybdate transp 99.3 5.9E-12 1.3E-16 109.7 5.8 138 68-207 16-203 (352)
162 cd03245 ABCC_bacteriocin_expor 99.3 1E-11 2.2E-16 100.9 6.9 153 49-207 5-212 (220)
163 PRK13646 cbiO cobalt transport 99.3 5.4E-12 1.2E-16 106.9 5.4 157 49-207 5-220 (286)
164 TIGR02324 CP_lyasePhnL phospho 99.3 8.1E-12 1.8E-16 101.9 6.3 142 64-207 22-223 (224)
165 PRK11614 livF leucine/isoleuci 99.3 5.1E-12 1.1E-16 104.0 4.8 153 49-207 8-211 (237)
166 PRK10247 putative ABC transpor 99.3 9.7E-12 2.1E-16 101.7 6.5 153 48-207 9-211 (225)
167 PRK10575 iron-hydroxamate tran 99.3 4.5E-12 9.7E-17 106.2 4.4 155 47-207 12-222 (265)
168 TIGR00235 udk uridine kinase. 99.3 8.5E-12 1.8E-16 100.8 5.9 129 73-212 3-138 (207)
169 PRK10771 thiQ thiamine transpo 99.3 6E-12 1.3E-16 103.3 5.1 138 68-207 17-204 (232)
170 COG1123 ATPase components of v 99.3 4.1E-12 8.8E-17 114.5 4.4 160 47-208 6-230 (539)
171 PRK15112 antimicrobial peptide 99.3 1.3E-11 2.7E-16 103.6 6.9 142 64-207 27-224 (267)
172 cd03264 ABC_drug_resistance_li 99.2 1.3E-11 2.8E-16 99.8 6.7 140 64-207 14-203 (211)
173 PRK13652 cbiO cobalt transport 99.2 8.7E-12 1.9E-16 105.1 5.8 142 64-207 18-212 (277)
174 PRK11701 phnK phosphonate C-P 99.2 9.3E-12 2E-16 103.8 5.9 154 48-207 8-226 (258)
175 PRK15439 autoinducer 2 ABC tra 99.2 1.5E-11 3.2E-16 112.1 7.6 141 65-207 278-477 (510)
176 PRK11124 artP arginine transpo 99.2 1.1E-11 2.3E-16 102.4 6.1 142 64-207 16-215 (242)
177 PRK14259 phosphate ABC transpo 99.2 1.1E-11 2.4E-16 104.1 6.1 154 47-207 14-227 (269)
178 PRK13644 cbiO cobalt transport 99.2 6E-12 1.3E-16 106.0 4.5 141 64-207 16-209 (274)
179 TIGR02142 modC_ABC molybdenum 99.2 8.7E-12 1.9E-16 108.7 5.6 138 68-207 15-206 (354)
180 PRK10261 glutathione transport 99.2 5.7E-12 1.2E-16 117.3 4.7 159 47-207 13-243 (623)
181 cd03300 ABC_PotA_N PotA is an 99.2 1.1E-11 2.4E-16 101.7 5.8 153 49-207 3-205 (232)
182 PRK13645 cbiO cobalt transport 99.2 7.8E-12 1.7E-16 106.0 5.0 159 47-207 7-225 (289)
183 PRK03695 vitamin B12-transport 99.2 1.4E-11 3.1E-16 102.2 6.4 141 65-207 11-207 (248)
184 KOG0055|consensus 99.2 8.8E-12 1.9E-16 120.3 5.8 155 48-207 352-561 (1228)
185 TIGR02982 heterocyst_DevA ABC 99.2 1.1E-11 2.4E-16 100.9 5.5 141 64-207 19-215 (220)
186 TIGR01978 sufC FeS assembly AT 99.2 2.3E-11 4.9E-16 100.3 7.5 142 64-207 14-219 (243)
187 TIGR01277 thiQ thiamine ABC tr 99.2 9.4E-12 2E-16 100.8 5.1 139 67-207 15-203 (213)
188 PRK14245 phosphate ABC transpo 99.2 1.2E-11 2.6E-16 102.6 5.8 152 49-207 6-219 (250)
189 cd03252 ABCC_Hemolysin The ABC 99.2 6.8E-12 1.5E-16 103.2 4.3 140 64-207 16-210 (237)
190 PRK13549 xylose transporter AT 99.2 1.1E-11 2.4E-16 112.8 6.0 154 48-207 7-217 (506)
191 cd03231 ABC_CcmA_heme_exporter 99.2 1.4E-11 3.1E-16 99.0 5.9 140 65-206 15-198 (201)
192 PRK13635 cbiO cobalt transport 99.2 1.3E-11 2.7E-16 104.3 5.7 155 48-207 7-214 (279)
193 PRK13639 cbiO cobalt transport 99.2 1.1E-11 2.3E-16 104.5 5.3 154 49-207 4-211 (275)
194 TIGR02769 nickel_nikE nickel i 99.2 1.9E-11 4.1E-16 102.4 6.7 142 64-207 25-225 (265)
195 TIGR03873 F420-0_ABC_ATP propo 99.2 1.1E-11 2.3E-16 103.3 5.1 142 64-207 15-211 (256)
196 cd03297 ABC_ModC_molybdenum_tr 99.2 2E-11 4.3E-16 99.0 6.6 137 68-207 16-206 (214)
197 TIGR02323 CP_lyasePhnK phospho 99.2 1.7E-11 3.7E-16 101.8 6.3 153 49-207 6-223 (253)
198 PRK09580 sufC cysteine desulfu 99.2 2E-11 4.3E-16 101.0 6.7 153 49-207 4-220 (248)
199 PRK10418 nikD nickel transport 99.2 2E-11 4.4E-16 101.5 6.8 152 49-207 7-215 (254)
200 PRK14242 phosphate transporter 99.2 1.8E-11 4E-16 101.6 6.4 152 49-207 9-222 (253)
201 COG4598 HisP ABC-type histidin 99.2 3.5E-11 7.5E-16 94.4 7.5 153 48-206 8-225 (256)
202 PRK15056 manganese/iron transp 99.2 1.4E-11 3E-16 103.6 5.7 154 48-206 8-215 (272)
203 TIGR03771 anch_rpt_ABC anchore 99.2 5E-11 1.1E-15 97.4 8.8 133 72-206 2-186 (223)
204 cd03213 ABCG_EPDR ABCG transpo 99.2 1.6E-11 3.4E-16 98.3 5.7 156 49-207 6-186 (194)
205 PRK13633 cobalt transporter AT 99.2 1.7E-11 3.7E-16 103.5 6.2 156 49-207 7-218 (280)
206 PRK10982 galactose/methyl gala 99.2 1.5E-11 3.2E-16 111.5 6.2 142 64-207 12-208 (491)
207 cd00267 ABC_ATPase ABC (ATP-bi 99.2 1.2E-11 2.5E-16 95.6 4.7 135 65-208 14-155 (157)
208 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.2 2.9E-11 6.3E-16 99.5 7.1 139 65-207 18-211 (238)
209 PRK14248 phosphate ABC transpo 99.2 1.6E-11 3.6E-16 102.9 5.7 154 47-207 22-237 (268)
210 cd03254 ABCC_Glucan_exporter_l 99.2 3.1E-11 6.8E-16 98.7 7.1 152 49-207 5-211 (229)
211 TIGR03005 ectoine_ehuA ectoine 99.2 2E-11 4.3E-16 101.4 6.0 142 64-207 14-221 (252)
212 PRK15134 microcin C ABC transp 99.2 2E-11 4.4E-16 111.6 6.5 158 48-207 7-231 (529)
213 PRK13631 cbiO cobalt transport 99.2 1.6E-11 3.5E-16 105.6 5.5 159 47-207 22-250 (320)
214 PRK14241 phosphate transporter 99.2 2.1E-11 4.6E-16 101.6 6.0 153 48-207 6-221 (258)
215 PRK13640 cbiO cobalt transport 99.2 1.9E-11 4.2E-16 103.3 5.8 154 49-207 8-217 (282)
216 PRK09544 znuC high-affinity zi 99.2 1.8E-11 3.8E-16 101.9 5.4 141 65-207 19-195 (251)
217 PRK13546 teichoic acids export 99.2 2.2E-11 4.8E-16 102.1 6.0 142 64-207 38-217 (264)
218 COG3845 ABC-type uncharacteriz 99.2 3.2E-11 6.8E-16 106.7 7.2 155 47-207 5-214 (501)
219 PRK09700 D-allose transporter 99.2 3.2E-11 6.9E-16 109.8 7.5 141 65-207 278-483 (510)
220 PRK13648 cbiO cobalt transport 99.2 3.7E-11 7.9E-16 100.9 7.3 155 48-207 9-216 (269)
221 PRK01170 phosphopantetheine ad 99.2 2.3E-11 5E-16 103.8 6.0 53 1-59 88-140 (322)
222 COG0410 LivF ABC-type branched 99.2 3.2E-11 7E-16 97.6 6.5 142 63-207 16-211 (237)
223 cd03260 ABC_PstB_phosphate_tra 99.2 2.4E-11 5.1E-16 99.3 5.8 141 64-207 14-214 (227)
224 TIGR00972 3a0107s01c2 phosphat 99.2 2.7E-11 5.9E-16 100.3 6.3 141 64-207 15-217 (247)
225 PRK14267 phosphate ABC transpo 99.2 2.7E-11 5.8E-16 100.6 6.2 152 49-207 7-222 (253)
226 PRK13636 cbiO cobalt transport 99.2 2.1E-11 4.6E-16 103.1 5.7 155 48-207 7-216 (283)
227 PRK14247 phosphate ABC transpo 99.2 2.6E-11 5.7E-16 100.5 6.1 152 49-207 6-219 (250)
228 cd03234 ABCG_White The White s 99.2 3.3E-11 7.2E-16 98.5 6.6 157 49-207 6-218 (226)
229 PRK14239 phosphate transporter 99.2 3.1E-11 6.8E-16 100.1 6.6 153 48-207 7-221 (252)
230 PRK14256 phosphate ABC transpo 99.2 2.6E-11 5.6E-16 100.7 6.0 153 48-207 6-221 (252)
231 KOG0057|consensus 99.2 6.2E-11 1.3E-15 106.0 8.7 140 64-207 366-559 (591)
232 PRK10982 galactose/methyl gala 99.2 3.2E-11 6.9E-16 109.3 7.1 141 65-207 263-465 (491)
233 PRK11288 araG L-arabinose tran 99.2 2E-11 4.3E-16 111.0 5.6 153 49-207 7-214 (501)
234 TIGR02770 nickel_nikD nickel i 99.2 5.4E-11 1.2E-15 97.5 7.7 140 66-207 2-200 (230)
235 cd03248 ABCC_TAP TAP, the Tran 99.2 3.2E-11 6.9E-16 98.5 6.3 156 47-207 12-222 (226)
236 PRK13549 xylose transporter AT 99.2 4.4E-11 9.5E-16 108.8 7.7 158 47-207 260-479 (506)
237 TIGR00968 3a0106s01 sulfate AB 99.2 2.1E-11 4.5E-16 100.5 5.1 142 64-207 14-205 (237)
238 CHL00131 ycf16 sulfate ABC tra 99.2 5E-11 1.1E-15 98.9 7.4 154 48-207 9-226 (252)
239 PRK11288 araG L-arabinose tran 99.2 4.2E-11 9.2E-16 108.8 7.5 141 65-207 268-470 (501)
240 cd03290 ABCC_SUR1_N The SUR do 99.2 5.4E-11 1.2E-15 96.7 7.4 153 49-207 3-215 (218)
241 PRK15064 ABC transporter ATP-b 99.2 3.1E-11 6.7E-16 110.4 6.5 150 49-207 4-226 (530)
242 PTZ00301 uridine kinase; Provi 99.2 2.5E-11 5.4E-16 98.5 5.2 126 76-212 3-139 (210)
243 PRK14243 phosphate transporter 99.2 2.6E-11 5.7E-16 101.5 5.6 153 48-207 12-224 (264)
244 cd03251 ABCC_MsbA MsbA is an e 99.2 5.6E-11 1.2E-15 97.5 7.4 140 64-207 16-210 (234)
245 PRK13409 putative ATPase RIL; 99.2 2.3E-11 5.1E-16 112.4 5.7 139 66-207 355-528 (590)
246 cd02025 PanK Pantothenate kina 99.2 1.3E-11 2.8E-16 100.9 3.5 120 78-211 1-140 (220)
247 PRK14240 phosphate transporter 99.2 4E-11 8.7E-16 99.4 6.5 153 48-207 5-219 (250)
248 cd03236 ABC_RNaseL_inhibitor_d 99.2 4.3E-11 9.3E-16 99.9 6.7 141 65-208 16-214 (255)
249 cd03289 ABCC_CFTR2 The CFTR su 99.2 2.8E-11 6.1E-16 102.0 5.6 153 49-207 5-210 (275)
250 PRK10762 D-ribose transporter 99.2 4.1E-11 8.8E-16 108.9 7.1 141 65-207 267-469 (501)
251 PRK14269 phosphate ABC transpo 99.2 2.2E-11 4.7E-16 100.9 4.8 152 49-207 5-215 (246)
252 PRK13538 cytochrome c biogenes 99.2 3.3E-11 7.1E-16 97.1 5.7 139 65-205 16-201 (204)
253 COG2884 FtsE Predicted ATPase 99.2 8.6E-11 1.9E-15 92.7 7.8 153 49-206 4-210 (223)
254 PRK14268 phosphate ABC transpo 99.2 3.1E-11 6.7E-16 100.7 5.7 153 48-207 14-227 (258)
255 PRK13632 cbiO cobalt transport 99.2 3E-11 6.5E-16 101.5 5.7 155 48-207 9-216 (271)
256 cd03244 ABCC_MRP_domain2 Domai 99.2 7E-11 1.5E-15 96.1 7.7 153 49-207 5-211 (221)
257 cd02023 UMPK Uridine monophosp 99.2 3.4E-11 7.3E-16 96.5 5.7 121 78-211 1-130 (198)
258 TIGR01166 cbiO cobalt transpor 99.2 3.9E-11 8.4E-16 95.5 6.0 129 65-193 7-189 (190)
259 COG4604 CeuD ABC-type enteroch 99.2 6.2E-11 1.3E-15 94.1 6.9 152 49-206 4-209 (252)
260 TIGR01257 rim_protein retinal- 99.2 1.9E-11 4.1E-16 124.7 5.1 157 47-207 1938-2144(2272)
261 PRK10419 nikE nickel transport 99.2 4.3E-11 9.3E-16 100.4 6.5 142 64-207 26-226 (268)
262 PRK13545 tagH teichoic acids e 99.2 2.3E-11 5E-16 110.0 5.1 157 48-207 23-217 (549)
263 PRK14274 phosphate ABC transpo 99.2 3.3E-11 7.2E-16 100.5 5.7 153 48-207 14-228 (259)
264 PRK14272 phosphate ABC transpo 99.2 4.7E-11 1E-15 99.0 6.3 152 49-207 7-221 (252)
265 PRK14270 phosphate ABC transpo 99.2 6.1E-11 1.3E-15 98.4 6.9 140 65-207 19-220 (251)
266 TIGR02857 CydD thiol reductant 99.2 2.6E-11 5.7E-16 110.7 5.0 155 46-206 320-529 (529)
267 TIGR00554 panK_bact pantothena 99.2 2.5E-11 5.4E-16 102.8 4.5 126 73-211 59-208 (290)
268 PRK14246 phosphate ABC transpo 99.2 4.6E-11 9.9E-16 99.7 6.0 155 47-208 11-227 (257)
269 TIGR01189 ccmA heme ABC export 99.2 4.8E-11 1E-15 95.6 5.9 137 64-204 14-196 (198)
270 PRK14273 phosphate ABC transpo 99.2 6.1E-11 1.3E-15 98.6 6.7 153 48-207 9-223 (254)
271 PRK09984 phosphonate/organopho 99.2 6.5E-11 1.4E-15 98.9 6.8 142 64-207 18-227 (262)
272 cd03369 ABCC_NFT1 Domain 2 of 99.2 8.9E-11 1.9E-15 94.6 7.4 155 47-207 7-197 (207)
273 PRK11160 cysteine/glutathione 99.2 2.5E-11 5.5E-16 112.0 4.7 156 47-208 339-548 (574)
274 TIGR03796 NHPM_micro_ABC1 NHPM 99.2 1.6E-11 3.4E-16 115.9 3.4 153 47-207 478-685 (710)
275 COG1129 MglA ABC-type sugar tr 99.2 8.8E-11 1.9E-15 105.2 7.9 153 47-207 9-219 (500)
276 COG4618 ArpD ABC-type protease 99.2 2.7E-11 5.9E-16 107.5 4.5 148 57-207 343-545 (580)
277 cd03299 ABC_ModC_like Archeal 99.2 3.3E-11 7.2E-16 99.2 4.7 141 65-207 14-204 (235)
278 COG4172 ABC-type uncharacteriz 99.2 1.1E-10 2.3E-15 101.4 7.9 143 62-207 299-501 (534)
279 PRK11176 lipid transporter ATP 99.2 2.1E-11 4.5E-16 112.5 3.8 156 47-208 342-553 (582)
280 PRK14253 phosphate ABC transpo 99.1 6.5E-11 1.4E-15 98.1 6.4 152 49-207 6-218 (249)
281 TIGR02633 xylG D-xylose ABC tr 99.1 4.4E-11 9.5E-16 108.6 5.7 153 49-207 4-215 (500)
282 PRK15177 Vi polysaccharide exp 99.1 9E-11 2E-15 95.3 6.9 139 66-207 3-177 (213)
283 PRK10636 putative ABC transpor 99.1 6.3E-11 1.4E-15 110.6 6.8 150 49-207 4-220 (638)
284 PRK14261 phosphate ABC transpo 99.1 5.2E-11 1.1E-15 99.0 5.5 141 64-207 20-222 (253)
285 PRK10744 pstB phosphate transp 99.1 1E-10 2.2E-15 97.7 7.2 154 47-207 14-229 (260)
286 COG4988 CydD ABC-type transpor 99.1 1.3E-10 2.9E-15 104.7 8.4 151 51-208 325-529 (559)
287 TIGR03375 type_I_sec_LssB type 99.1 1.9E-11 4E-16 115.2 3.1 155 47-207 464-673 (694)
288 PRK13642 cbiO cobalt transport 99.1 5.8E-11 1.3E-15 100.1 5.8 155 49-207 7-214 (277)
289 cd03250 ABCC_MRP_domain1 Domai 99.1 1.3E-10 2.9E-15 93.4 7.7 156 49-207 3-201 (204)
290 PRK14260 phosphate ABC transpo 99.1 6.1E-11 1.3E-15 98.9 5.9 152 49-207 10-223 (259)
291 cd03253 ABCC_ATM1_transporter 99.1 9.3E-11 2E-15 96.3 6.8 139 65-207 16-209 (236)
292 PRK14262 phosphate ABC transpo 99.1 6.5E-11 1.4E-15 98.1 5.9 152 49-207 6-219 (250)
293 TIGR03269 met_CoM_red_A2 methy 99.1 6.1E-11 1.3E-15 108.2 6.2 153 49-207 3-243 (520)
294 PRK14255 phosphate ABC transpo 99.1 8.7E-11 1.9E-15 97.5 6.6 152 49-207 8-221 (252)
295 PRK10261 glutathione transport 99.1 4.7E-11 1E-15 111.2 5.5 159 47-207 314-538 (623)
296 PRK14265 phosphate ABC transpo 99.1 5.8E-11 1.3E-15 100.0 5.5 154 47-207 21-234 (274)
297 TIGR01842 type_I_sec_PrtD type 99.1 3E-11 6.6E-16 110.8 4.0 158 46-208 316-528 (544)
298 PRK13539 cytochrome c biogenes 99.1 1.1E-10 2.4E-15 94.3 6.8 141 65-209 17-201 (207)
299 PRK13409 putative ATPase RIL; 99.1 8E-11 1.7E-15 108.9 6.7 139 65-207 89-285 (590)
300 TIGR03797 NHPM_micro_ABC2 NHPM 99.1 2.4E-11 5.3E-16 114.2 3.4 153 47-207 452-658 (686)
301 PRK10790 putative multidrug tr 99.1 2.6E-11 5.6E-16 112.2 3.4 154 47-207 341-548 (592)
302 PRK15134 microcin C ABC transp 99.1 7.2E-11 1.6E-15 108.0 6.3 142 64-207 300-500 (529)
303 PRK11174 cysteine/glutathione 99.1 2.5E-11 5.5E-16 112.1 3.3 140 64-207 364-557 (588)
304 PRK14275 phosphate ABC transpo 99.1 8.8E-11 1.9E-15 99.5 6.3 154 47-207 40-255 (286)
305 PRK13547 hmuV hemin importer A 99.1 5.1E-11 1.1E-15 100.3 4.7 142 64-207 15-229 (272)
306 TIGR03269 met_CoM_red_A2 methy 99.1 8.3E-11 1.8E-15 107.3 6.4 159 47-207 280-502 (520)
307 PRK14237 phosphate transporter 99.1 1E-10 2.2E-15 98.1 6.3 155 46-207 20-236 (267)
308 PRK14236 phosphate transporter 99.1 1.3E-10 2.9E-15 97.6 7.1 154 47-207 26-241 (272)
309 PRK14251 phosphate ABC transpo 99.1 9.5E-11 2.1E-15 97.2 6.0 153 48-207 6-220 (251)
310 PRK11147 ABC transporter ATPas 99.1 8.3E-11 1.8E-15 109.8 6.2 150 49-207 6-227 (635)
311 TIGR02633 xylG D-xylose ABC tr 99.1 1.3E-10 2.9E-15 105.5 7.4 158 47-207 258-477 (500)
312 PRK11819 putative ABC transpor 99.1 1.4E-10 2.9E-15 106.8 7.3 151 49-207 9-234 (556)
313 PRK14258 phosphate ABC transpo 99.1 8.8E-11 1.9E-15 98.1 5.3 153 49-207 10-225 (261)
314 PRK14271 phosphate ABC transpo 99.1 1.6E-10 3.4E-15 97.5 6.8 154 47-207 22-236 (276)
315 PRK13540 cytochrome c biogenes 99.1 9E-11 1.9E-15 94.2 5.0 130 64-193 15-189 (200)
316 PRK14249 phosphate ABC transpo 99.1 1.8E-10 3.9E-15 95.6 6.8 152 49-207 7-220 (251)
317 TIGR02203 MsbA_lipidA lipid A 99.1 5.4E-11 1.2E-15 109.5 3.9 155 47-207 331-541 (571)
318 KOG0058|consensus 99.1 1.1E-10 2.4E-15 107.4 5.8 156 47-207 466-676 (716)
319 TIGR01193 bacteriocin_ABC ABC- 99.1 4.7E-11 1E-15 112.7 3.3 153 47-207 474-682 (708)
320 COG4525 TauB ABC-type taurine 99.1 6.1E-10 1.3E-14 88.4 8.8 157 49-209 6-209 (259)
321 TIGR01257 rim_protein retinal- 99.1 7.2E-11 1.6E-15 120.6 4.3 156 47-207 929-1134(2272)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 2.3E-10 4.9E-15 105.2 7.1 152 48-207 6-232 (552)
323 PRK15064 ABC transporter ATP-b 99.1 1.5E-10 3.1E-15 106.0 5.7 152 47-207 320-509 (530)
324 cd02024 NRK1 Nicotinamide ribo 99.1 2.1E-10 4.6E-15 91.3 5.9 33 179-211 109-142 (187)
325 PRK14238 phosphate transporter 99.1 2.1E-10 4.5E-15 96.5 6.2 153 48-207 26-240 (271)
326 PRK14263 phosphate ABC transpo 99.1 1.7E-10 3.7E-15 96.5 5.6 141 64-207 22-222 (261)
327 PRK13657 cyclic beta-1,2-gluca 99.1 8.4E-11 1.8E-15 108.8 4.1 154 47-207 335-543 (588)
328 PRK14257 phosphate ABC transpo 99.1 1.7E-10 3.6E-15 99.7 5.6 155 48-207 82-298 (329)
329 PRK14244 phosphate ABC transpo 99.1 1.8E-10 3.9E-15 95.6 5.6 154 48-208 7-223 (251)
330 PRK10636 putative ABC transpor 99.1 2E-10 4.4E-15 107.2 6.4 152 47-207 313-501 (638)
331 PRK14264 phosphate ABC transpo 99.1 1.9E-10 4E-15 98.4 5.6 150 48-204 47-270 (305)
332 PRK14235 phosphate transporter 99.1 2.4E-10 5.2E-15 95.8 6.2 154 47-207 20-236 (267)
333 PRK10938 putative molybdenum t 99.1 1.6E-10 3.4E-15 104.8 5.4 155 47-207 261-477 (490)
334 PRK14252 phosphate ABC transpo 99.1 2.9E-10 6.2E-15 95.2 6.3 154 47-207 17-234 (265)
335 KOG0055|consensus 99.1 2.6E-10 5.7E-15 110.3 6.7 156 47-207 988-1198(1228)
336 TIGR02868 CydC thiol reductant 99.1 1.1E-10 2.3E-15 106.7 3.9 140 47-190 335-528 (529)
337 PLN02348 phosphoribulokinase 99.1 2.1E-10 4.5E-15 100.2 5.5 127 72-211 45-194 (395)
338 PRK14254 phosphate ABC transpo 99.0 2.9E-10 6.4E-15 96.3 6.2 151 48-205 41-251 (285)
339 cd03291 ABCC_CFTR1 The CFTR su 99.0 3.6E-10 7.9E-15 95.6 6.6 140 64-207 51-232 (282)
340 TIGR01194 cyc_pep_trnsptr cycl 99.0 3E-10 6.5E-15 104.5 6.5 158 47-207 338-544 (555)
341 PRK10789 putative multidrug tr 99.0 1.3E-10 2.8E-15 107.2 4.2 155 47-207 314-523 (569)
342 PLN03211 ABC transporter G-25; 99.0 3.4E-10 7.3E-15 106.0 6.9 143 64-207 82-281 (659)
343 PRK10522 multidrug transporter 99.0 2.9E-10 6.3E-15 104.4 6.0 156 46-207 322-523 (547)
344 cd03288 ABCC_SUR2 The SUR doma 99.0 3.8E-10 8.2E-15 94.1 6.1 155 47-207 20-228 (257)
345 TIGR01846 type_I_sec_HlyB type 99.0 9.9E-11 2.2E-15 110.3 2.9 155 47-207 456-665 (694)
346 TIGR01192 chvA glucan exporter 99.0 1.5E-10 3.3E-15 107.1 4.0 154 47-207 335-543 (585)
347 TIGR00958 3a01208 Conjugate Tr 99.0 1.4E-10 3E-15 109.7 3.7 154 47-207 479-687 (711)
348 COG1132 MdlB ABC-type multidru 99.0 1.7E-10 3.7E-15 106.3 4.2 155 47-208 329-538 (567)
349 PRK14266 phosphate ABC transpo 99.0 5.9E-10 1.3E-14 92.4 6.8 140 65-207 18-219 (250)
350 PRK11147 ABC transporter ATPas 99.0 1.9E-10 4.2E-15 107.4 3.8 152 47-207 320-511 (635)
351 PRK00777 phosphopantetheine ad 99.0 4.7E-10 1E-14 86.6 5.2 53 1-59 91-143 (153)
352 PRK09270 nucleoside triphospha 99.0 4.4E-10 9.6E-15 92.2 5.2 126 73-211 30-172 (229)
353 PLN03073 ABC transporter F fam 99.0 6.1E-10 1.3E-14 105.1 6.3 153 47-207 509-698 (718)
354 PRK13541 cytochrome c biogenes 99.0 8.3E-10 1.8E-14 88.3 6.2 126 69-194 19-186 (195)
355 TIGR02204 MsbA_rel ABC transpo 99.0 2.3E-10 5E-15 105.5 3.4 156 47-207 338-548 (576)
356 PRK05439 pantothenate kinase; 99.0 3.1E-10 6.8E-15 96.9 3.7 127 72-211 82-228 (311)
357 COG4559 ABC-type hemin transpo 99.0 1.2E-09 2.5E-14 87.8 6.7 141 64-207 15-215 (259)
358 PRK11819 putative ABC transpor 99.0 7.5E-10 1.6E-14 101.9 6.4 152 47-207 325-516 (556)
359 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 7.3E-10 1.6E-14 101.9 6.2 152 47-207 323-514 (552)
360 PLN03073 ABC transporter F fam 99.0 4.6E-10 1E-14 105.9 4.9 67 136-207 347-415 (718)
361 PTZ00265 multidrug resistance 99.0 9.1E-10 2E-14 110.8 7.2 70 136-208 582-654 (1466)
362 KOG0059|consensus 99.0 8.1E-10 1.8E-14 106.6 6.4 141 65-207 580-772 (885)
363 cd03270 ABC_UvrA_I The excisio 99.0 9.4E-10 2E-14 90.2 5.6 67 137-206 141-211 (226)
364 PRK10535 macrolide transporter 99.0 6.5E-10 1.4E-14 104.0 5.3 156 49-207 7-217 (648)
365 PLN03232 ABC transporter C fam 99.0 3.3E-10 7.2E-15 114.4 3.2 155 47-207 1235-1443(1495)
366 COG0396 sufC Cysteine desulfur 99.0 3.3E-09 7.1E-14 86.0 8.3 127 65-191 19-204 (251)
367 COG0488 Uup ATPase components 98.9 9.1E-10 2E-14 100.3 5.7 151 48-207 5-224 (530)
368 COG0488 Uup ATPase components 98.9 3.8E-09 8.2E-14 96.3 9.6 154 44-207 319-510 (530)
369 PF00485 PRK: Phosphoribulokin 98.9 4.6E-11 1E-15 95.6 -2.7 33 179-211 105-138 (194)
370 PLN03130 ABC transporter C fam 98.9 4.3E-10 9.4E-15 114.1 3.6 156 46-207 1237-1446(1622)
371 PRK01184 hypothetical protein; 98.9 2.5E-09 5.4E-14 84.6 7.1 34 76-109 1-34 (184)
372 COG1119 ModF ABC-type molybden 98.9 4.7E-09 1E-13 85.9 8.7 153 49-207 34-247 (257)
373 TIGR01187 potA spermidine/putr 98.9 9.6E-10 2.1E-14 94.8 4.9 70 136-207 103-175 (325)
374 cd02028 UMPK_like Uridine mono 98.9 9.3E-10 2E-14 87.1 4.1 120 78-211 1-129 (179)
375 COG1072 CoaA Panthothenate kin 98.9 1E-09 2.2E-14 91.1 4.5 126 71-211 77-222 (283)
376 TIGR00957 MRP_assoc_pro multi 98.9 4.7E-10 1E-14 113.5 2.7 156 46-207 1284-1493(1522)
377 PTZ00243 ABC transporter; Prov 98.9 7.1E-10 1.5E-14 112.3 3.7 155 47-207 1309-1518(1560)
378 TIGR00954 3a01203 Peroxysomal 98.9 1.8E-09 3.8E-14 101.3 6.1 153 47-208 452-653 (659)
379 PTZ00265 multidrug resistance 98.9 8.7E-10 1.9E-14 111.0 4.0 71 135-208 1360-1433(1466)
380 COG1102 Cmk Cytidylate kinase 98.9 6.5E-09 1.4E-13 80.0 7.8 98 78-211 2-102 (179)
381 COG4133 CcmA ABC-type transpor 98.9 6.9E-09 1.5E-13 81.8 7.8 129 65-193 17-192 (209)
382 TIGR00955 3a01204 The Eye Pigm 98.9 5E-09 1.1E-13 97.6 8.3 143 64-207 39-241 (617)
383 PLN02318 phosphoribulokinase/u 98.9 1.8E-09 3.9E-14 98.5 5.0 122 73-211 62-188 (656)
384 COG4161 ArtP ABC-type arginine 98.9 4.6E-09 9.9E-14 81.3 6.5 149 49-206 5-214 (242)
385 KOG0056|consensus 98.9 6.8E-09 1.5E-13 92.3 8.4 154 47-207 538-746 (790)
386 COG4167 SapF ABC-type antimicr 98.9 2.2E-10 4.8E-15 90.1 -1.1 38 62-99 25-62 (267)
387 COG4148 ModC ABC-type molybdat 98.9 6.7E-09 1.4E-13 86.6 7.2 136 69-207 17-203 (352)
388 TIGR00956 3a01205 Pleiotropic 98.8 4.4E-09 9.5E-14 105.7 6.8 143 64-207 777-977 (1394)
389 PRK08233 hypothetical protein; 98.8 1.3E-08 2.8E-13 79.9 7.8 104 76-211 3-109 (182)
390 COG4172 ABC-type uncharacteriz 98.8 6.4E-09 1.4E-13 90.6 6.5 158 47-207 7-232 (534)
391 TIGR02173 cyt_kin_arch cytidyl 98.8 1E-08 2.2E-13 79.7 6.8 31 78-108 2-33 (171)
392 TIGR01271 CFTR_protein cystic 98.8 2.4E-09 5.2E-14 108.2 3.8 155 47-207 1218-1425(1490)
393 COG4181 Predicted ABC-type tra 98.8 2.9E-08 6.3E-13 77.5 8.1 156 50-208 10-221 (228)
394 cd03278 ABC_SMC_barmotin Barmo 98.8 1.7E-08 3.7E-13 81.0 6.9 135 69-210 16-192 (197)
395 TIGR00956 3a01205 Pleiotropic 98.8 1.4E-08 2.9E-13 102.2 7.6 143 64-207 75-285 (1394)
396 COG1101 PhnK ABC-type uncharac 98.8 2.3E-08 5E-13 80.6 7.3 142 64-207 20-223 (263)
397 TIGR01271 CFTR_protein cystic 98.8 1.2E-08 2.7E-13 103.2 6.6 139 65-207 441-621 (1490)
398 TIGR00957 MRP_assoc_pro multi 98.7 1.4E-08 3.1E-13 102.9 6.4 156 47-207 637-835 (1522)
399 cd03272 ABC_SMC3_euk Eukaryoti 98.7 4.2E-08 9E-13 80.9 7.3 70 137-210 162-237 (243)
400 PRK04182 cytidylate kinase; Pr 98.7 3.5E-08 7.6E-13 77.2 6.4 32 77-108 1-33 (180)
401 PLN03232 ABC transporter C fam 98.7 2.1E-08 4.5E-13 101.6 6.3 156 47-207 615-813 (1495)
402 cd03280 ABC_MutS2 MutS2 homolo 98.7 7.3E-09 1.6E-13 83.2 2.4 133 67-207 18-164 (200)
403 cd02029 PRK_like Phosphoribulo 98.7 2.2E-08 4.8E-13 83.6 5.2 125 78-211 1-152 (277)
404 PLN03140 ABC transporter G fam 98.7 1.4E-08 3.1E-13 102.1 4.9 143 64-207 179-412 (1470)
405 PRK06547 hypothetical protein; 98.7 3.6E-08 7.8E-13 77.6 5.4 37 73-109 12-49 (172)
406 PLN03140 ABC transporter G fam 98.7 3.2E-08 6.9E-13 99.7 6.2 143 64-207 894-1094(1470)
407 cd02020 CMPK Cytidine monophos 98.7 6.3E-08 1.4E-12 73.2 6.3 30 78-107 1-31 (147)
408 cd03240 ABC_Rad50 The catalyti 98.6 1.4E-07 3E-12 76.1 8.4 65 143-210 131-199 (204)
409 PRK13477 bifunctional pantoate 98.6 9.7E-08 2.1E-12 86.7 8.0 143 65-211 274-432 (512)
410 COG0283 Cmk Cytidylate kinase 98.6 3.4E-07 7.5E-12 73.7 10.2 127 76-212 4-150 (222)
411 PLN03130 ABC transporter C fam 98.6 3.3E-08 7.1E-13 100.6 5.3 155 47-207 615-813 (1622)
412 COG4138 BtuD ABC-type cobalami 98.6 2.1E-08 4.6E-13 78.6 3.0 136 69-206 18-205 (248)
413 cd03279 ABC_sbcCD SbcCD and ot 98.6 4.3E-08 9.3E-13 79.5 4.8 70 136-207 126-207 (213)
414 COG4674 Uncharacterized ABC-ty 98.6 1.6E-08 3.5E-13 80.4 2.1 152 48-206 7-219 (249)
415 PTZ00243 ABC transporter; Prov 98.6 3.5E-08 7.6E-13 100.2 5.0 139 65-207 675-855 (1560)
416 COG4615 PvdE ABC-type sideroph 98.6 2.2E-08 4.7E-13 87.1 3.0 32 68-99 341-372 (546)
417 COG4170 SapD ABC-type antimicr 98.6 3.3E-08 7.1E-13 79.6 3.8 160 49-210 6-236 (330)
418 TIGR01360 aden_kin_iso1 adenyl 98.6 2E-07 4.4E-12 73.4 7.5 34 76-109 3-37 (188)
419 PF13207 AAA_17: AAA domain; P 98.6 5.2E-08 1.1E-12 71.5 3.5 31 78-108 1-32 (121)
420 KOG0061|consensus 98.6 5.5E-08 1.2E-12 90.5 4.5 143 64-207 44-245 (613)
421 PRK04040 adenylate kinase; Pro 98.6 2.4E-07 5.1E-12 74.0 7.6 32 76-107 2-36 (188)
422 PRK15453 phosphoribulokinase; 98.5 1.3E-07 2.8E-12 79.6 5.9 36 73-108 2-43 (290)
423 cd03271 ABC_UvrA_II The excisi 98.5 2.3E-07 4.9E-12 77.7 7.4 67 137-206 173-244 (261)
424 PLN02200 adenylate kinase fami 98.5 3.7E-07 8E-12 75.3 8.4 38 73-110 40-78 (234)
425 COG5265 ATM1 ABC-type transpor 98.5 4.2E-07 9E-12 79.7 8.8 140 64-207 277-471 (497)
426 PRK13946 shikimate kinase; Pro 98.5 3.2E-07 7E-12 72.8 7.5 35 75-109 9-44 (184)
427 COG4107 PhnK ABC-type phosphon 98.5 1.6E-07 3.4E-12 73.7 5.5 48 48-99 8-55 (258)
428 PRK00131 aroK shikimate kinase 98.5 3.5E-07 7.5E-12 71.0 7.4 35 75-109 3-38 (175)
429 KOG0062|consensus 98.5 1.2E-07 2.6E-12 84.7 4.8 120 68-190 98-254 (582)
430 KOG0054|consensus 98.5 5E-07 1.1E-11 89.5 9.4 159 45-207 517-716 (1381)
431 KOG0927|consensus 98.5 2.3E-07 5E-12 83.3 6.4 153 44-204 73-290 (614)
432 KOG3308|consensus 98.5 2.5E-07 5.4E-12 73.7 5.8 128 75-211 3-139 (225)
433 cd00820 PEPCK_HprK Phosphoenol 98.5 8.2E-08 1.8E-12 69.6 2.7 42 65-107 4-45 (107)
434 COG4136 ABC-type uncharacteriz 98.5 3.9E-07 8.5E-12 69.8 6.0 33 67-99 19-51 (213)
435 cd03275 ABC_SMC1_euk Eukaryoti 98.4 6.3E-07 1.4E-11 74.3 7.4 72 138-212 160-237 (247)
436 PRK03731 aroL shikimate kinase 98.4 8.5E-07 1.8E-11 69.2 7.6 36 77-112 3-39 (171)
437 PF00005 ABC_tran: ABC transpo 98.4 3.2E-08 6.9E-13 74.2 -0.6 31 69-99 4-34 (137)
438 COG1245 Predicted ATPase, RNas 98.4 1.6E-06 3.4E-11 76.9 9.2 134 72-207 363-530 (591)
439 PRK05057 aroK shikimate kinase 98.4 1.4E-06 3E-11 68.5 8.1 33 76-108 4-37 (172)
440 PRK00023 cmk cytidylate kinase 98.4 2.4E-06 5.3E-11 70.0 9.8 36 76-111 4-40 (225)
441 PRK06217 hypothetical protein; 98.4 3.8E-07 8.2E-12 72.2 4.7 36 77-112 2-38 (183)
442 cd03274 ABC_SMC4_euk Eukaryoti 98.4 2.9E-07 6.3E-12 74.8 4.1 68 137-208 131-204 (212)
443 KOG0054|consensus 98.4 4.5E-07 9.7E-12 89.9 5.7 159 44-208 1136-1348(1381)
444 COG4778 PhnL ABC-type phosphon 98.3 2.6E-07 5.7E-12 72.1 2.6 51 48-98 6-59 (235)
445 PRK05537 bifunctional sulfate 98.3 1.1E-06 2.3E-11 81.2 7.0 98 14-112 311-435 (568)
446 COG4178 ABC-type uncharacteriz 98.3 1.4E-06 3.1E-11 80.0 7.5 112 65-176 408-560 (604)
447 TIGR01351 adk adenylate kinase 98.3 1.8E-06 3.8E-11 69.9 7.2 35 79-113 2-37 (210)
448 PRK08118 topology modulation p 98.3 5.3E-07 1.1E-11 70.6 3.9 34 77-110 2-36 (167)
449 KOG0927|consensus 98.3 3.8E-07 8.2E-12 82.0 3.0 132 70-206 410-579 (614)
450 cd03285 ABC_MSH2_euk MutS2 hom 98.3 3.2E-07 7E-12 75.0 2.4 128 66-206 20-165 (222)
451 cd03227 ABC_Class2 ABC-type Cl 98.3 1E-06 2.3E-11 68.4 5.0 126 75-208 20-155 (162)
452 COG0529 CysC Adenylylsulfate k 98.3 6.8E-07 1.5E-11 70.0 3.8 43 72-114 19-67 (197)
453 COG1936 Predicted nucleotide k 98.3 1.1E-06 2.4E-11 68.5 4.9 30 78-107 2-31 (180)
454 COG0703 AroK Shikimate kinase 98.3 2E-06 4.3E-11 67.3 6.3 33 77-109 3-36 (172)
455 PRK09825 idnK D-gluconate kina 98.3 9.8E-07 2.1E-11 69.7 4.6 35 75-109 2-37 (176)
456 KOG2702|consensus 98.3 3.2E-07 7E-12 74.6 1.5 136 72-211 115-270 (323)
457 PRK13948 shikimate kinase; Pro 98.3 1.5E-06 3.3E-11 69.0 5.3 39 75-113 9-48 (182)
458 cd03239 ABC_SMC_head The struc 98.2 2.6E-06 5.6E-11 67.4 6.2 127 78-208 24-172 (178)
459 PRK07261 topology modulation p 98.2 1.2E-06 2.6E-11 68.8 4.2 34 78-111 2-36 (171)
460 PRK06762 hypothetical protein; 98.2 8.3E-07 1.8E-11 68.9 3.0 38 76-113 2-42 (166)
461 PRK13949 shikimate kinase; Pro 98.2 1.5E-06 3.2E-11 68.2 4.3 35 77-111 2-37 (169)
462 PLN02199 shikimate kinase 98.2 8.7E-07 1.9E-11 75.0 3.2 53 76-130 102-155 (303)
463 PRK03839 putative kinase; Prov 98.2 1.1E-06 2.4E-11 69.2 3.6 33 78-110 2-35 (180)
464 cd03276 ABC_SMC6_euk Eukaryoti 98.2 7.7E-06 1.7E-10 65.7 8.2 69 137-208 113-190 (198)
465 cd03282 ABC_MSH4_euk MutS4 hom 98.2 2.1E-06 4.6E-11 69.4 4.7 34 65-98 18-51 (204)
466 COG1245 Predicted ATPase, RNas 98.2 2.7E-06 5.8E-11 75.4 5.5 133 73-207 97-287 (591)
467 TIGR01313 therm_gnt_kin carboh 98.2 1.8E-06 4E-11 66.7 3.9 32 79-110 1-33 (163)
468 PRK10078 ribose 1,5-bisphospho 98.1 2.6E-06 5.7E-11 67.6 4.5 32 76-107 2-34 (186)
469 PRK03846 adenylylsulfate kinas 98.1 2.3E-06 4.9E-11 68.6 4.0 40 73-112 21-66 (198)
470 cd02021 GntK Gluconate kinase 98.1 2.5E-06 5.4E-11 65.0 4.0 34 78-111 1-35 (150)
471 PRK09518 bifunctional cytidyla 98.1 1.6E-05 3.5E-10 75.5 10.3 36 77-112 2-38 (712)
472 PRK11860 bifunctional 3-phosph 98.1 1.8E-05 3.9E-10 74.5 10.4 135 75-212 441-586 (661)
473 COG0563 Adk Adenylate kinase a 98.1 3.6E-06 7.8E-11 66.6 4.7 39 78-116 2-41 (178)
474 cd00464 SK Shikimate kinase (S 98.1 2.4E-06 5.2E-11 65.1 3.6 36 79-114 2-38 (154)
475 PRK08356 hypothetical protein; 98.1 4.5E-06 9.9E-11 66.7 5.2 33 76-108 5-37 (195)
476 TIGR01359 UMP_CMP_kin_fam UMP- 98.1 4.2E-06 9.2E-11 65.8 4.8 34 78-111 1-35 (183)
477 PF01583 APS_kinase: Adenylyls 98.1 2.2E-06 4.7E-11 66.3 3.0 39 75-113 1-45 (156)
478 PRK14530 adenylate kinase; Pro 98.1 2.8E-06 6E-11 69.0 3.8 36 76-111 3-39 (215)
479 PF13555 AAA_29: P-loop contai 98.1 3.7E-06 8.1E-11 54.8 3.5 24 76-99 23-46 (62)
480 PF03308 ArgK: ArgK protein; 98.1 1E-05 2.2E-10 67.2 6.8 113 74-210 27-153 (266)
481 PF13671 AAA_33: AAA domain; P 98.1 2.4E-06 5.2E-11 64.3 2.8 33 78-110 1-34 (143)
482 PRK14527 adenylate kinase; Pro 98.1 5.4E-06 1.2E-10 66.0 4.9 39 73-111 3-42 (191)
483 KOG3347|consensus 98.1 1.5E-05 3.3E-10 60.8 6.9 36 77-112 8-44 (176)
484 PRK08154 anaerobic benzoate ca 98.1 2.6E-06 5.6E-11 73.1 3.2 40 70-109 127-167 (309)
485 PRK13947 shikimate kinase; Pro 98.1 4.2E-06 9E-11 65.1 4.0 36 78-113 3-39 (171)
486 cd03283 ABC_MutS-like MutS-lik 98.1 2.8E-06 6.1E-11 68.3 3.0 24 75-98 24-47 (199)
487 TIGR03238 dnd_assoc_3 dnd syst 98.0 2.1E-06 4.5E-11 77.0 2.1 31 64-94 20-50 (504)
488 PRK14532 adenylate kinase; Pro 98.0 6.5E-06 1.4E-10 65.2 4.7 35 78-112 2-37 (188)
489 KOG3354|consensus 98.0 5.2E-06 1.1E-10 63.7 3.8 36 74-109 10-46 (191)
490 PRK00625 shikimate kinase; Pro 98.0 4.3E-06 9.3E-11 65.9 3.5 34 78-111 2-36 (173)
491 PRK00300 gmk guanylate kinase; 98.0 5.2E-06 1.1E-10 66.6 3.9 26 74-99 3-28 (205)
492 PRK02496 adk adenylate kinase; 98.0 6.7E-06 1.5E-10 64.9 4.4 37 77-113 2-39 (184)
493 cd01428 ADK Adenylate kinase ( 98.0 8.8E-06 1.9E-10 64.4 5.0 36 79-114 2-38 (194)
494 COG3265 GntK Gluconate kinase 98.0 1.1E-05 2.5E-10 61.3 5.3 98 82-189 1-100 (161)
495 KOG0064|consensus 98.0 1.7E-05 3.7E-10 71.5 7.2 108 69-176 501-657 (728)
496 TIGR02322 phosphon_PhnN phosph 98.0 4.9E-06 1.1E-10 65.3 3.4 24 76-99 1-24 (179)
497 PTZ00088 adenylate kinase 1; P 98.0 1.1E-05 2.3E-10 66.4 5.3 38 76-113 6-44 (229)
498 PRK00889 adenylylsulfate kinas 98.0 6E-06 1.3E-10 64.7 3.6 38 74-111 2-45 (175)
499 PRK14531 adenylate kinase; Pro 98.0 1.2E-05 2.5E-10 63.7 5.1 34 77-110 3-37 (183)
500 KOG0635|consensus 98.0 1.2E-05 2.7E-10 61.5 4.9 42 72-113 27-74 (207)
No 1
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.97 E-value=1.9e-31 Score=211.18 Aligned_cols=134 Identities=43% Similarity=0.728 Sum_probs=122.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHH
Q psy17138 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMN 156 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~ 156 (212)
++|||||+.||||||++++|..+|++++++|.++|++|.++...+..+.+.||.++++.+|.+||+.|+.++|+||..+.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~~ 80 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAELGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKLK 80 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHTT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHHCCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
.+++++||.+...+..++..... .+++++|.|+|+|.+|..+||.+|+|+||++
T Consensus 81 ~L~~iihP~I~~~~~~~~~~~~~-~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e 134 (180)
T PF01121_consen 81 KLENIIHPLIREEIEKFIKRNKS-EKVVVVEIPLLFESGLEKLCDEVIVVYAPEE 134 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHS-TSEEEEE-TTTTTTTGGGGSSEEEEEE--HH
T ss_pred HHHHHHhHHHHHHHHHHHHhccC-CCEEEEEcchhhhhhHhhhhceEEEEECCHH
Confidence 99999999999999999887542 3899999999999999999999999999975
No 2
>KOG3220|consensus
Probab=99.97 E-value=2.1e-30 Score=203.54 Aligned_cols=137 Identities=36% Similarity=0.545 Sum_probs=131.5
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEM 155 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~ 155 (212)
++++||+|++||||||+++.+.++|++++|+|.++|+.+.|+.+.+..+.+.||.+++..+|.+||..|++.+|+||+.+
T Consensus 1 M~iVGLTGgiatGKStVs~~f~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFKALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred CeEEEeecccccChHHHHHHHHHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCCCC
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~~ 212 (212)
..++.++||.++.++...+..+. .+++++++|.|+|+|++|.++|+.+|+|.||+++
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~ 138 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEEL 138 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHH
Confidence 99999999999999988876665 8999999999999999999999999999999873
No 3
>PLN02422 dephospho-CoA kinase
Probab=99.96 E-value=1.6e-29 Score=206.82 Aligned_cols=135 Identities=36% Similarity=0.605 Sum_probs=126.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHH
Q psy17138 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMN 156 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~ 156 (212)
.+|||+|++||||||++++|..+|++++|+|.++|++|.++...+..+.+.||.+++..+|.+||+.|+..+|+||..+.
T Consensus 2 ~~igltG~igsGKstv~~~l~~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~ 81 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKSSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQ 81 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHHCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence 47999999999999999999999999999999999999999889999999999999988999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 157 KLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
++++++||.+...+...+.+.. .+.+++++|.|+|+|++|.++||.+|+|+||++
T Consensus 82 ~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e 137 (232)
T PLN02422 82 LLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPE 137 (232)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhhhCCEEEEEECCHH
Confidence 9999999999999977775543 345799999999999999999999999999976
No 4
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.96 E-value=4.4e-29 Score=200.33 Aligned_cols=133 Identities=28% Similarity=0.388 Sum_probs=124.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHHH
Q psy17138 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNK 157 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~~ 157 (212)
++||+|++||||||++++|.++|+.++++|.++|++|.++...++.+.+.||..++..+|.+||..|+..+|+||..+.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~ 80 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKA 80 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHCCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 158 LNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 158 ~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
+++++||.+.+++...+.... ..+++++|.|+|+|++|..+||.+|+|+||++
T Consensus 81 L~~i~hP~v~~~~~~~~~~~~-~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e 133 (196)
T PRK14732 81 LNELIHPLVRKDFQKILQTTA-EGKLVIWEVPLLFETDAYTLCDATVTVDSDPE 133 (196)
T ss_pred HHHHhhHHHHHHHHHHHHHHh-cCCcEEEEeeeeeEcCchhhCCEEEEEECCHH
Confidence 999999999999988887653 34689999999999999999999999999976
No 5
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.96 E-value=6.4e-29 Score=199.22 Aligned_cols=135 Identities=35% Similarity=0.571 Sum_probs=126.4
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEM 155 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~ 155 (212)
+.+|||+|++||||||+++.|..+|++++++|.+.|++|.++...+..+...||..++..+|.++|+.|+..+|+++..+
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAELGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 57899999999999999999999999999999999999999988999999999999988789999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
.++++++||.+.+++...+.... ...++++|+|+|+|.+|.++||.+|+|+||++
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~-~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e 136 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAE-SSPYVVLDIPLLFENGLEKLVDRVLVVDAPPE 136 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc-cCCEEEEEehHhhcCCchhhCCeEEEEECCHH
Confidence 99999999999999988887653 23799999999999999999999999999975
No 6
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.96 E-value=2.5e-28 Score=196.69 Aligned_cols=137 Identities=30% Similarity=0.449 Sum_probs=127.8
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEM 155 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~ 155 (212)
+.+|||+|++||||||+++.|+.+|++++++|.++|++|.++...+..+.+.||..++..+|.+||+.|+..+|.|+..+
T Consensus 1 m~~igitG~igsGKst~~~~l~~~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 1 MLRIGLTGGIGSGKSTVADLLSSEGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHCCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 35899999999999999999999999999999999999999988999999999999998899999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCCCC
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~~ 212 (212)
.++++++||.+...+..++.... .+..+++++.|+|+|.+|.++||.+|+|+||+++
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ 138 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEE 138 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHH
Confidence 99999999999999988876654 4457999999999999999999999999999763
No 7
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.96 E-value=1.8e-28 Score=202.31 Aligned_cols=136 Identities=26% Similarity=0.358 Sum_probs=122.7
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDE 154 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~ 154 (212)
+.+|||||++||||||++++|.. +|++++|+|.++|++|.++...++.+.+.||..++..+|.+||..|+..+|+||..
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~ 80 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA 80 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence 46899999999999999999997 69999999999999999999999999999999998778999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhh---------c-CCCcEEEEEecccccccc-ccccCeEEEEEeCCC
Q psy17138 155 MNKLNQAIWPLILAQVKEEIARL---------S-ESHKVIVIEAAVLLSAKW-QDQVHEIWVTFIPEQ 211 (212)
Q Consensus 155 ~~~~~~i~~p~~~~~~~~~i~~~---------~-~~~~~vvie~~~l~e~~~-~~~~d~v~~v~~~~~ 211 (212)
++++++++||.+..++...+.+. . .+..++++|+|+|+|+++ ..+||.+|+|.||++
T Consensus 81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e 148 (244)
T PTZ00451 81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEE 148 (244)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHH
Confidence 99999999999999987777532 1 223599999999999985 468999999999976
No 8
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.96 E-value=1.9e-28 Score=196.67 Aligned_cols=134 Identities=36% Similarity=0.605 Sum_probs=125.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHc-CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCC-ccchHhHHHHhcCChHH
Q psy17138 77 YIIGLTGGIASGKSTIAKYLETL-GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG-SIDRKKLGAIVFSNKDE 154 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~l-g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~r~~l~~~vf~~~~~ 154 (212)
.+|||+|++||||||+++.|..+ |++++++|.+.|++|.++...+..+...||..++..+| .+||+.|+..+|.|+..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 47999999999999999999987 99999999999999999999999999999999998889 89999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 155 MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 155 ~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
+.++++++||.+.+.+...+.+. ....++++|.|+|+|.+|.++||.+|+|+||++
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~-~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e 137 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQL-KSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPE 137 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhc-CCCCEEEEEeHHhcCcchHhCCCEEEEEECCHH
Confidence 99999999999999998888664 245799999999999999999999999999976
No 9
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.95 E-value=5.9e-28 Score=195.62 Aligned_cols=138 Identities=29% Similarity=0.571 Sum_probs=126.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCC--Cc--cchHhHHHHhc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD--GS--IDRKKLGAIVF 149 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~--~~r~~l~~~vf 149 (212)
+.+++|||+|++||||||++++|.++|++++++|.++|++|.++...+.++...||.+++..+ +. ++|+.|+.++|
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAEMGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 446899999999999999999999999999999999999999998888999999999998543 43 89999999999
Q ss_pred CChHHHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 150 SNKDEMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 150 ~~~~~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
++|..+.++++++||.+..++...+.... .+..++++|+|+|+|++|...||.+|+|+||++
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e 145 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESGGDAGLDFIVVVAADTE 145 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHH
Confidence 99999999999999999999998887665 455799999999999999999999999999976
No 10
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.95 E-value=7.2e-28 Score=193.88 Aligned_cols=134 Identities=25% Similarity=0.405 Sum_probs=122.1
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCCh
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~ 152 (212)
..+++|||+|++||||||++++|.. +|++++++|.+.|++|.+ ...+..+.+.||.+++. +|.+||..|+..+|+|+
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~ 81 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESK 81 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCH
Confidence 4578999999999999999999985 899999999999999987 55788999999999986 78999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecccccccc--ccccCeEEEEEeCCC
Q psy17138 153 DEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKW--QDQVHEIWVTFIPEQ 211 (212)
Q Consensus 153 ~~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~--~~~~d~v~~v~~~~~ 211 (212)
..+.++++++||.+.+++.+++.+. +..++++|.|+|+|.+| ..+||.+|+|+||++
T Consensus 82 ~~~~~Le~i~HP~V~~~~~~~~~~~--~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e 140 (204)
T PRK14733 82 EAKKWLEDYLHPVINKEIKKQVKES--DTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLE 140 (204)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhc--CCCeEEEEechhhhccCchhhhCCEEEEEECCHH
Confidence 9999999999999999998888653 44699999999999986 579999999999976
No 11
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.95 E-value=9.6e-28 Score=190.04 Aligned_cols=133 Identities=41% Similarity=0.693 Sum_probs=124.3
Q ss_pred EEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHHH
Q psy17138 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNK 157 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~~ 157 (212)
+|||+|++||||||+++.|+.+|++++++|.+.|++|.++...+..+...||..++..+|.++|..|+..+|+++..+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~~ 80 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKELGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRKK 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHHH
Confidence 48999999999999999999999999999999999999998899999999999998888999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 158 LNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 158 ~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
+++++||.+..++...+.... ...++++|+|+|+|.+|..+||.+|+|+||++
T Consensus 81 l~~i~hp~i~~~~~~~~~~~~-~~~~vive~plL~e~~~~~~~D~vv~V~a~~~ 133 (179)
T cd02022 81 LEAITHPLIRKEIEEQLAEAR-KEKVVVLDIPLLFETGLEKLVDRVIVVDAPPE 133 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHcc-CCCEEEEEehHhhcCCcHHhCCeEEEEECCHH
Confidence 999999999999988887643 34699999999999999999999999999975
No 12
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.95 E-value=3.7e-27 Score=189.27 Aligned_cols=134 Identities=36% Similarity=0.549 Sum_probs=122.9
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEM 155 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~ 155 (212)
+.+|||||++||||||+++++..+|++++++|.+.|++|.++...+..+...||.++.+.+|.++|+.|+..+|+|+..+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~~ 81 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAELGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEAR 81 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHcCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHHH
Confidence 67999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
.++++++||.+++++. ...+.... .++++|.|+|+|.+...+||+||+|+||++
T Consensus 82 ~~Le~i~hPli~~~~~-~~~~~~~~-~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e 135 (201)
T COG0237 82 LKLEKILHPLIRAEIK-VVIDGARS-PYVVLEIPLLFEAGGEKYFDKVIVVYAPPE 135 (201)
T ss_pred HHHHHhhhHHHHHHHH-HHHHHhhC-CceEEEchHHHhccccccCCEEEEEECCHH
Confidence 9999999999999987 43333222 299999999999977778999999999976
No 13
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.94 E-value=4.5e-27 Score=187.46 Aligned_cols=134 Identities=33% Similarity=0.553 Sum_probs=124.9
Q ss_pred EEEEecCCCCcHHHHHHHHHHcC-CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHH
Q psy17138 78 IIGLTGGIASGKSTIAKYLETLG-AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMN 156 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~lg-~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~ 156 (212)
+|||+|++||||||+++.|+.+| ++++++|.+.|++|.++...+..+...||..++..+|.++|..|+..+|+||..+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 48999999999999999999886 99999999999999999889999999999999888899999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
++++++||.+.+++.+.+.+......++++++|++++.++..+||.+|+|++|++
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~ 135 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQ 135 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHH
Confidence 9999999999999999987765334699999999999889999999999999975
No 14
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=197.76 Aligned_cols=135 Identities=34% Similarity=0.486 Sum_probs=125.3
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEM 155 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~ 155 (212)
+.+|||||++||||||++++|+.+|++++|+|.++|++|.++...+..+.+.||..+++.+|.+||+.|+..+|.|+..+
T Consensus 1 m~~IgltG~igsGKStv~~~L~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 1 MLRIGLTGGIGAGKSTVAARLAELGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHCCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 35799999999999999999999999999999999999999988899999999999998899999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
.++++++||.+...+.+.+... .+..+++++.++|+|.+|..+||.+|+|++|.+
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~-~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e 135 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAA-PEDAVVVEDIPLLVESGMAPLFHLVVVVDADVE 135 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-CCCCEEEEEeeeeecCCchhhCCEEEEEECCHH
Confidence 9999999999999998877654 345688889999999999999999999999975
No 15
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.70 E-value=4.1e-17 Score=130.49 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=113.9
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccc----------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHR---------- 112 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~---------- 112 (212)
++++..++|+ ....++++++...+|+++.|+|||||||||++|+|++| |...++++.+...
T Consensus 4 ~i~~l~K~fg----~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 4 EIKNLSKSFG----DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred EEEeeeEEeC----CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 4667777776 34788899999999999999999999999999999987 6667776433210
Q ss_pred -------cccCCchh----------------------HHHHHHHhCCcc-------CCCCCccchHhHHHHhcCChH--H
Q psy17138 113 -------AYDVGTRG----------------------NQVVRELFGEDI-------ALPDGSIDRKKLGAIVFSNKD--E 154 (212)
Q Consensus 113 -------~~~~~~~~----------------------~~~~~~~~g~~~-------~~~~~~~~r~~l~~~vf~~~~--~ 154 (212)
.+.|.... -..+++..|..- .-+.|+.+|..|++.+--+|+ +
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmL 159 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVML 159 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEe
Confidence 01111100 112222223211 125678899999999999998 6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 155 MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 155 ~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
++++++.++|+...++.+.++++....-+.++.+|-|--| ++.+||++|++-
T Consensus 160 FDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA--r~VadrviFmd~ 211 (240)
T COG1126 160 FDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA--REVADRVIFMDQ 211 (240)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH--HHhhheEEEeeC
Confidence 7899999999999999999998885555666668988766 579999999874
No 16
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.66 E-value=1e-16 Score=126.98 Aligned_cols=154 Identities=12% Similarity=0.123 Sum_probs=112.0
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccccc----------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRA---------- 113 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~---------- 113 (212)
+.+..++|.. ..+++++++++..+|+++||.|+|||||||++|+|+.| |...+++-...++.
T Consensus 4 v~~l~K~y~~---~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 4 VTDLTKSYGS---KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred eeehhhhccC---HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 4455666653 55688999999999999999999999999999999987 55555532221111
Q ss_pred ------ccCCc--------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138 114 ------YDVGT--------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL 158 (212)
Q Consensus 114 ------~~~~~--------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~ 158 (212)
|..-+ ...+.+.+.|+..-. -+.|+.+|-.+++.+.+||+ .++++
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP 160 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEP 160 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCC
Confidence 10000 011222222222110 13467788899999999998 56889
Q ss_pred HhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 159 NQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 159 ~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.++-...+.+++++++++...+.+++.+|.|.|. ..+||+++++-
T Consensus 161 ~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Ev--ealCDrvivlh 207 (245)
T COG4555 161 TSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV--EALCDRVIVLH 207 (245)
T ss_pred CCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHH--HHhhheEEEEe
Confidence 999999999999999999987778999999999875 57999999874
No 17
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=6.7e-16 Score=126.16 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=111.8
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------c
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------H 111 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~ 111 (212)
.+++.++.|.. ..+++++++...+|++++|+||||||||||+|++++| |...+++..+. +
T Consensus 5 ~i~~v~~~f~~----~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 5 EIEGVSKSFGG----VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred EEEeeEEEeCc----eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence 46667777764 5788999999999999999999999999999999997 44444444320 0
Q ss_pred ccccCCc---------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138 112 RAYDVGT---------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQA 161 (212)
Q Consensus 112 ~~~~~~~---------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i 161 (212)
..+.|.. ......++.+|..-+ -+.|+.+|..|++.+..+|+ +++++-..
T Consensus 81 ~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA 160 (248)
T COG1116 81 DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160 (248)
T ss_pred CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence 0011110 123344455554322 25688999999999999998 55777777
Q ss_pred hhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeC
Q psy17138 162 IWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIP 209 (212)
Q Consensus 162 ~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~ 209 (212)
++...+..+++.+.++- ...+++++-+|.+.|| --+.||++++..-
T Consensus 161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EA--v~LsdRivvl~~~ 207 (248)
T COG1116 161 LDALTREELQDELLRLWEETRKTVLLVTHDVDEA--VYLADRVVVLSNR 207 (248)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH--HhhhCEEEEecCC
Confidence 88888888887776664 4456777779999997 3588999988764
No 18
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.62 E-value=7.4e-16 Score=127.57 Aligned_cols=142 Identities=20% Similarity=0.182 Sum_probs=104.9
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------c-cccCC------------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------R-AYDVG------------ 117 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~-~~~~~------------ 117 (212)
..++++++..++|.+++|+||||||||||+|+|+++ |...+++..+.. . .|.|+
T Consensus 16 ~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d 95 (258)
T COG1120 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE 95 (258)
T ss_pred eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEee
Confidence 456778899999999999999999999999999985 444555433210 0 01111
Q ss_pred -----------------ch---hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 118 -----------------TR---GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 118 -----------------~~---~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
.. ...+.++..|...+ -++|+.+|..+++.+.|++. +++++++.++....-
T Consensus 96 ~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~ 175 (258)
T COG1120 96 LVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQI 175 (258)
T ss_pred hHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHH
Confidence 00 12223444443322 14578899999999999998 678999999999999
Q ss_pred HHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.+.++++. .....+++..|.+..| ..+||+++++.
T Consensus 176 evl~ll~~l~~~~~~tvv~vlHDlN~A--~ryad~~i~lk 213 (258)
T COG1120 176 EVLELLRDLNREKGLTVVMVLHDLNLA--ARYADHLILLK 213 (258)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 9999998887 5567888889999876 47999999875
No 19
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.61 E-value=6.6e-16 Score=116.18 Aligned_cols=54 Identities=30% Similarity=0.563 Sum_probs=50.5
Q ss_pred CeEecccchhhHHHHHHHHHHCCCCCccEEEeecccCCCCCCcccccceechhhhhhhhc
Q psy17138 1 NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELG 60 (212)
Q Consensus 1 ~~vvs~et~~~~~~in~~r~~~gl~~l~~~~i~~~~~~~~~~~~~~~~iss~~~r~~~~g 60 (212)
+||||+||++||.+||+.|.++||+||+|++|++|. + .++.++||+++|.....
T Consensus 95 ~iVVS~ET~~~Al~IN~~R~~~Gl~pL~I~~i~~v~-a-----edg~~iSSTrIrrgeId 148 (158)
T COG1019 95 AIVVSPETYPGALKINEIREKRGLPPLEIIVIDYVL-A-----EDGKPISSTRIRRGEID 148 (158)
T ss_pred EEEEccccchhHHHHHHHHHHCCCCCeEEEEEehhh-h-----hcCCccchhhhhhhccC
Confidence 699999999999999999999999999999999998 6 68889999999988653
No 20
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.60 E-value=1.5e-15 Score=124.23 Aligned_cols=154 Identities=23% Similarity=0.208 Sum_probs=113.7
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------cc--
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------RA-- 113 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~~-- 113 (212)
+.+++++|. ..+++++++++...|+++.++|||||||||++|++++| |...++...+.. .+
T Consensus 4 ~~nvsk~y~----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 4 FENVSKRYG----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred eeeeehhcC----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 455667775 44788999999999999999999999999999999987 556665444311 00
Q ss_pred ------ccCCc---------------------hhHHHHHHHhCCcc--C-------CCCCccchHhHHHHhcCChH--HH
Q psy17138 114 ------YDVGT---------------------RGNQVVRELFGEDI--A-------LPDGSIDRKKLGAIVFSNKD--EM 155 (212)
Q Consensus 114 ------~~~~~---------------------~~~~~~~~~~g~~~--~-------~~~~~~~r~~l~~~vf~~~~--~~ 155 (212)
+.|.. ....++.+.+|.+- + -+.|+.+|--+++.+..+|. ++
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLM 159 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLM 159 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEee
Confidence 11110 12344555555432 1 14678889999999999998 66
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
+++-..++|..+..+++.+.++. .-.+++++.+|.+.|| .++.|++.+++.
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA--~kLadri~vm~~ 211 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEA--LKLADRIAVMDA 211 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHH--HhhhceEEEecC
Confidence 77888899999999999888776 4466777779999997 588999988763
No 21
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.58 E-value=2.5e-15 Score=127.75 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=111.6
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------cccc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------RAYD 115 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~~~~ 115 (212)
+.+.+++|.. ...+++++++...+|.++||+|||||||||++|+|.++ |...+++-.... --|.
T Consensus 7 ~~~l~k~~~~---~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 7 VRNLTKKYGG---DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred ecceEEEeCC---CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 4455555541 23678889999999999999999999999999999987 333333211100 0111
Q ss_pred CC----------------------------chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHH
Q psy17138 116 VG----------------------------TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKL 158 (212)
Q Consensus 116 ~~----------------------------~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~ 158 (212)
++ ....+.+++.+|..-.. +.|+.+|..++..+..+|+ .++++
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP 163 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEP 163 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 11 11234556666655311 3467778899999999998 56899
Q ss_pred HhhhhHHHHHHHHHHHHhhcC-CCcEEEEEeccccccccccccCeEEEEE
Q psy17138 159 NQAIWPLILAQVKEEIARLSE-SHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 159 ~~i~~p~~~~~~~~~i~~~~~-~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.++|..+.++++.++++.. +..+|++.+|.+-+. ..+||+++++.
T Consensus 164 t~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~--~~~~d~v~il~ 211 (293)
T COG1131 164 TSGLDPESRREIWELLRELAKEGGVTILLSTHILEEA--EELCDRVIILN 211 (293)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHH--HHhCCEEEEEe
Confidence 999999999999999999874 447999999999886 46799998875
No 22
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.55 E-value=3.4e-15 Score=113.92 Aligned_cols=51 Identities=39% Similarity=0.689 Sum_probs=47.9
Q ss_pred CeEecccchhhHHHHHHHHHHCCCCCccEEEeecccCCCCCCcccccceechhhhh
Q psy17138 1 NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRM 56 (212)
Q Consensus 1 ~~vvs~et~~~~~~in~~r~~~gl~~l~~~~i~~~~~~~~~~~~~~~~iss~~~r~ 56 (212)
|||||+||++||.+||+.|+|+||+||++++|+++. + ++++.|||||++|.
T Consensus 92 ~lVVS~ET~~~~~~iN~~R~~~gl~pl~i~~v~~v~-~----~~~~~kiSST~iR~ 142 (143)
T cd02164 92 AIVVSPETYPGALKINRKREENGLSPLEIVVVPLVK-A----DEDGEKISSTRIRR 142 (143)
T ss_pred EEEEcHHHhhhHHHHHHHHHHCCCCceeEEEEEeec-c----CCCCCeecchhhhC
Confidence 699999999999999999999999999999999999 4 36899999999985
No 23
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.5e-14 Score=119.38 Aligned_cols=153 Identities=15% Similarity=0.067 Sum_probs=110.0
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------ccccccCC
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------GHRAYDVG 117 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------~~~~~~~~ 117 (212)
+++.+.+|.. . .+++++++...+|.+++|+||||||||||+|.+.++ |...+....+ .+--|.|+
T Consensus 7 v~nl~v~y~~---~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 7 VENLTVSYGN---R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred EeeeEEEECC---E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 5555565531 2 478889999999999999999999999999999995 3333332211 01112222
Q ss_pred c----------------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--H
Q psy17138 118 T----------------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--E 154 (212)
Q Consensus 118 ~----------------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~ 154 (212)
. ......++..|..-+ -+.|+.+|..||+++.++|+ +
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lll 162 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLL 162 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEE
Confidence 1 112222333332211 14578899999999999999 5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 155 MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 155 ~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.+.+++.....+.+.+.+++...+.|++-+|.+... .++||+++.+.
T Consensus 163 LDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v--~~~~D~vi~Ln 213 (254)
T COG1121 163 LDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLV--MAYFDRVICLN 213 (254)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHh--HhhCCEEEEEc
Confidence 6899999999999999999999984488999999999764 57999998764
No 24
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.54 E-value=8.8e-15 Score=119.01 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=110.4
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccc-----------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHR----------- 112 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~----------- 112 (212)
+.+..+.|...+.....++++++...+|+++||+|+||||||||+++|+++ |...+++..+...
T Consensus 6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQ 85 (252)
T COG1124 6 VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQ 85 (252)
T ss_pred EeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcccee
Confidence 455556665554445788999999999999999999999999999999987 5556665433211
Q ss_pred -----cc---cCCch-------------------hHHHHHHHhCCcc--------CCCCCccchHhHHHHhcCChH--HH
Q psy17138 113 -----AY---DVGTR-------------------GNQVVRELFGEDI--------ALPDGSIDRKKLGAIVFSNKD--EM 155 (212)
Q Consensus 113 -----~~---~~~~~-------------------~~~~~~~~~g~~~--------~~~~~~~~r~~l~~~vf~~~~--~~ 155 (212)
.| .|... ....+.+.+|.+- .-+.|+.+|-.+++.+--+|. .+
T Consensus 86 mVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIl 165 (252)
T COG1124 86 MVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLIL 165 (252)
T ss_pred EEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEe
Confidence 01 11000 0223334444321 125688999999999999998 55
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++.+.+++.+...+++.+.+.+ .+-.++++ +|.+--. ..+|||+++++
T Consensus 166 DEptSaLD~siQa~IlnlL~~l~~~~~lt~l~I-sHdl~~v--~~~cdRi~Vm~ 216 (252)
T COG1124 166 DEPTSALDVSVQAQILNLLLELKKERGLTYLFI-SHDLALV--EHMCDRIAVMD 216 (252)
T ss_pred cCchhhhcHHHHHHHHHHHHHHHHhcCceEEEE-eCcHHHH--HHHhhheeeee
Confidence 88899999999999999988877 23345555 8888543 57999999876
No 25
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.53 E-value=8.9e-15 Score=118.97 Aligned_cols=156 Identities=19% Similarity=0.151 Sum_probs=109.4
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR 112 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~ 112 (212)
+.+..+.|...+....+++++++...+|++++|+||||||||||+++|.++ |...++...+. +.
T Consensus 4 ~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~ 83 (226)
T COG1136 4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRK 83 (226)
T ss_pred EeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHH
Confidence 445555565555557888999999999999999999999999999999987 44344431110 00
Q ss_pred -c--------ccCCc---------------------hhHHHHHHHhCCc-cC-------CCCCccchHhHHHHhcCChH-
Q psy17138 113 -A--------YDVGT---------------------RGNQVVRELFGED-IA-------LPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 113 -~--------~~~~~---------------------~~~~~~~~~~g~~-~~-------~~~~~~~r~~l~~~vf~~~~- 153 (212)
+ +.+.- .....+...+|.. .. -+.|+.+|..+++.+..+|.
T Consensus 84 ~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~i 163 (226)
T COG1136 84 KIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKI 163 (226)
T ss_pred hEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCe
Confidence 0 00000 0122334444443 11 13567889999999999998
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.++++.-+++...+++.+.+.+.. ....++++-+|...-+ .+|||++.+.
T Consensus 164 ilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA---~~~dr~i~l~ 216 (226)
T COG1136 164 ILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA---KYADRVIELK 216 (226)
T ss_pred EEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH---HhCCEEEEEe
Confidence 4478888999999999999998886 4466888889997654 6999998864
No 26
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1.7e-14 Score=123.70 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=110.6
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------cc--
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------RA-- 113 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------~~-- 113 (212)
..+++..++|+... +++++++....|++++|+|||||||||++|+|+|| |...++...+.. .+
T Consensus 4 i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 4 LELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 34667777775221 77888999999999999999999999999999998 555665444321 11
Q ss_pred ------ccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHH
Q psy17138 114 ------YDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNK 157 (212)
Q Consensus 114 ------~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~ 157 (212)
+.|.-. ...+.++..+.+-+ -+.|+.+|..+++.+..+|. ++++
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE 159 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE 159 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC
Confidence 122211 12233333332211 14678899999999999998 7788
Q ss_pred HHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 158 LNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 158 ~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+-+-+++..+..++..|+++. .-..+++.-+|...|+ -.+.|+++++.
T Consensus 160 PlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EA--mtladri~Vm~ 208 (338)
T COG3839 160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEA--MTLADRIVVMN 208 (338)
T ss_pred chhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHH--HhhCCEEEEEe
Confidence 888889999999988888765 3344666669999887 46899999886
No 27
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.51 E-value=1.7e-14 Score=123.37 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=109.1
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------c-cc
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------H-RA 113 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~-~~ 113 (212)
..+.+.+++|.. ...++++++...+|+++||+|||||||||++++|+++ |...++...+. + -.
T Consensus 8 i~i~~l~k~~~~----~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig 83 (306)
T PRK13537 8 IDFRNVEKRYGD----KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG 83 (306)
T ss_pred EEEEeEEEEECC----eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEE
Confidence 346677777742 2578889999999999999999999999999999987 33333322111 0 01
Q ss_pred ccCCc-------h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138 114 YDVGT-------R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN 156 (212)
Q Consensus 114 ~~~~~-------~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~ 156 (212)
|.++. . ...++++.++..-. -+.|+.+|..++..+.++|+ +++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLD 163 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD 163 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 11110 0 01122333443211 12356678889999999998 568
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.+.++|..++.+++.++++......+++.+|.+.+. ..+||++++++
T Consensus 164 EPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~--~~~~d~i~il~ 212 (306)
T PRK13537 164 EPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEA--ERLCDRLCVIE 212 (306)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence 99999999999999999988764467889999999875 47899999885
No 28
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.51 E-value=3.2e-14 Score=115.53 Aligned_cols=153 Identities=17% Similarity=0.217 Sum_probs=111.4
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccc----c----
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHR----A---- 113 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~----~---- 113 (212)
.++++..++|.. ....+++++...+|++++|+|||||||||++|.+.++ |...+++..+..- .
T Consensus 9 I~vr~v~~~fG~----~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 9 IEVRGVTKSFGD----RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred EEEeeeeeecCC----EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 457777787752 2567889999999999999999999999999999987 5555555443110 0
Q ss_pred ------ccCCc-----------------------hhHHHH--------------HHHhCCccCCCCCccchHhHHHHhcC
Q psy17138 114 ------YDVGT-----------------------RGNQVV--------------RELFGEDIALPDGSIDRKKLGAIVFS 150 (212)
Q Consensus 114 ------~~~~~-----------------------~~~~~~--------------~~~~g~~~~~~~~~~~r~~l~~~vf~ 150 (212)
++.+. ...+.+ .+.|..++ +.|+..|..|++.+.-
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsEL--SGGM~KRvaLARAial 162 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSEL--SGGMRKRVALARAIAL 162 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhh--cchHHHHHHHHHHHhc
Confidence 11110 001111 12222222 4678889999999999
Q ss_pred ChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 151 NKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
||+ .++++...++|.....+.+.|++++ +-..++++-+|.+.+. ...||+++++.
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~--~~i~Drv~~L~ 220 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSL--LTIADRVAVLA 220 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHH--HhhhceEEEEe
Confidence 998 4588999999999999999998887 4456777779999875 68999999874
No 29
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.50 E-value=3.2e-14 Score=122.64 Aligned_cols=155 Identities=16% Similarity=0.116 Sum_probs=109.0
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccc---------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHR--------- 112 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~--------- 112 (212)
..+++.+++|+ ...+++++++...+|++++|+|||||||||++|+|+|+ |...+++..+.+-
T Consensus 6 l~i~~v~k~yg----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 6 LEIRNVSKSFG----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred EEEEeeeeecC----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccce
Confidence 45777888886 44788999999999999999999999999999999987 4445554333110
Q ss_pred ---cc--cCC------------------ch----hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138 113 ---AY--DVG------------------TR----GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN 156 (212)
Q Consensus 113 ---~~--~~~------------------~~----~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~ 156 (212)
.| .|. .. ...+..+..+..-+ -+.|+.+|..|++.+-.+|. +++
T Consensus 82 VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLD 161 (352)
T COG3842 82 VFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLD 161 (352)
T ss_pred eecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhc
Confidence 00 010 00 12233333332211 14578889999999999887 557
Q ss_pred HHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 157 KLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++-..++..++.+++..++++. .-....+.-+|.-.|| ..++|+++++.
T Consensus 162 EPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEA--l~msDrI~Vm~ 211 (352)
T COG3842 162 EPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEA--LAMSDRIAVMN 211 (352)
T ss_pred CcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH--hhhccceEEcc
Confidence 7777888888888888887776 3355566669999887 57999998864
No 30
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=3.4e-14 Score=119.14 Aligned_cols=158 Identities=17% Similarity=0.153 Sum_probs=115.1
Q ss_pred eechhhhhhh-hccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138 49 LSSSNLRMRE-LGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------ 110 (212)
Q Consensus 49 iss~~~r~~~-~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------ 110 (212)
+.++++.|.. .+....+++++++..++|.++||+|.||+|||||+|+++.| |-..++++++.
T Consensus 4 l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~ 83 (339)
T COG1135 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQ 83 (339)
T ss_pred EEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHh
Confidence 4556666765 34456788999999999999999999999999999999987 55667765441
Q ss_pred -------cccccCCc---------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChHH-
Q psy17138 111 -------HRAYDVGT---------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKDE- 154 (212)
Q Consensus 111 -------~~~~~~~~---------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~~- 154 (212)
|-.+.... ....++++..|..-. -+.|+.+|..+++.+..+|+.
T Consensus 84 ~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iL 163 (339)
T COG1135 84 KIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKIL 163 (339)
T ss_pred hccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEE
Confidence 00011100 123344555554322 146788999999999999984
Q ss_pred -HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 155 -MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 155 -~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
-++.++.++|...+.+.+.+++.+ .-+-++++-+|-|.- .+++||+|.+++.
T Consensus 164 L~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V--vk~ic~rVavm~~ 217 (339)
T COG1135 164 LCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV--VKRICDRVAVLDQ 217 (339)
T ss_pred EecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH--HHHHhhhheEeeC
Confidence 478889999999999999998887 445556665888754 3689999998864
No 31
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.49 E-value=5.4e-14 Score=116.33 Aligned_cols=144 Identities=18% Similarity=0.139 Sum_probs=104.8
Q ss_pred ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccccccCCchhHHHHHHHhCCcc----
Q psy17138 62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDI---- 132 (212)
Q Consensus 62 ~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~---- 132 (212)
.+++++++++...+|+++||+|.|||||||++|+|.+| |..++++..+..-.-......+.+++...|..-
T Consensus 25 ~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ 104 (268)
T COG4608 25 YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLY 104 (268)
T ss_pred ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhh
Confidence 46889999999999999999999999999999999987 556666554322110000112333444434221
Q ss_pred ----CCCCCccchHhHHHHhcCChHH--HHHHHhhhhHHHHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEE
Q psy17138 133 ----ALPDGSIDRKKLGAIVFSNKDE--MNKLNQAIWPLILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIW 204 (212)
Q Consensus 133 ----~~~~~~~~r~~l~~~vf~~~~~--~~~~~~i~~p~~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~ 204 (212)
.-++|+.+|-.++..+.-+|++ .+++.+.++-.+...+...+.+++ .+-.++|+ +|.+.-. +.+||++.
T Consensus 105 ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFI-sHDL~vv--~~isdri~ 181 (268)
T COG4608 105 RYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFI-SHDLSVV--RYISDRIA 181 (268)
T ss_pred cCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEE-EEEHHhh--hhhcccEE
Confidence 1156889999999999888884 467888888888888888887776 45567777 8988764 57999999
Q ss_pred EEEe
Q psy17138 205 VTFI 208 (212)
Q Consensus 205 ~v~~ 208 (212)
+++.
T Consensus 182 VMy~ 185 (268)
T COG4608 182 VMYL 185 (268)
T ss_pred EEec
Confidence 8864
No 32
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=6e-14 Score=117.56 Aligned_cols=153 Identities=13% Similarity=0.100 Sum_probs=103.2
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC---cccc---------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD---QLGH--------- 111 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D---~i~~--------- 111 (212)
+.+.+++|... .+.+++++..+.|+.++|+|||||||||++|+|+|| |..+++.. +..+
T Consensus 5 i~~~~~~~~~~----~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 5 INNVKKRFGAF----GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ehhhhhhcccc----cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 45555666532 455689999999999999999999999999999997 44455433 1100
Q ss_pred ---------------ccc---------cCCc----hhHHHHHHHhCCcc-------CCCCCccchHhHHHHhcCChH--H
Q psy17138 112 ---------------RAY---------DVGT----RGNQVVRELFGEDI-------ALPDGSIDRKKLGAIVFSNKD--E 154 (212)
Q Consensus 112 ---------------~~~---------~~~~----~~~~~~~~~~g~~~-------~~~~~~~~r~~l~~~vf~~~~--~ 154 (212)
++. .++. ...+++++.....- .-+.|+.+|..|+..+.-+|. +
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLL 160 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLL 160 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEe
Confidence 000 0100 01122222211111 114678889999999988888 5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 155 MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 155 ~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++-..++..++.+++..++++- .-...+++-+|...|+ .++||+++++.
T Consensus 161 LDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea--~~ladrvvvl~ 212 (345)
T COG1118 161 LDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEA--LELADRVVVLN 212 (345)
T ss_pred ecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHH--HhhcceEEEec
Confidence 677888899999999988888776 3244555559999886 68999999874
No 33
>PLN02388 phosphopantetheine adenylyltransferase
Probab=99.49 E-value=2.1e-14 Score=112.66 Aligned_cols=54 Identities=37% Similarity=0.546 Sum_probs=49.4
Q ss_pred CeEecccchhhHHHHHHHHHHCCCCCccEEEeecccCCCCCCcccccceechhhhhhhh
Q psy17138 1 NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMREL 59 (212)
Q Consensus 1 ~~vvs~et~~~~~~in~~r~~~gl~~l~~~~i~~~~~~~~~~~~~~~~iss~~~r~~~~ 59 (212)
|||||+||++||.+||++|+++||+||+|++|+++. ++ .++.+||||++|....
T Consensus 112 ~LVVS~ET~~g~~~IN~~R~e~Gl~pL~i~~v~~v~-~~----~~~~kiSST~iR~~~~ 165 (177)
T PLN02388 112 AIVVSKETLPGGLSVNKKRAERGLSQLKIEVVDIVP-EE----STGNKLSSTTLRRLEA 165 (177)
T ss_pred EEEEcHhHhhhHHHHHHHHHHCCCCCeEEEEEEeEe-cC----CCCCccCHHHHHHHHH
Confidence 699999999999999999999999999999999999 41 4689999999998754
No 34
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.48 E-value=2.8e-14 Score=123.59 Aligned_cols=155 Identities=16% Similarity=0.122 Sum_probs=108.8
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------cc-c
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------HR-A 113 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~~-~ 113 (212)
..+.+.+++|.. ...++++++...+|.++||+||||||||||+++|+++ |...+++..+. +. .
T Consensus 42 i~i~nl~k~y~~----~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 42 IDLAGVSKSYGD----KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred EEEEEEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 346666666642 2478889999999999999999999999999999986 33333321110 00 0
Q ss_pred ccCC-------ch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138 114 YDVG-------TR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN 156 (212)
Q Consensus 114 ~~~~-------~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~ 156 (212)
|.++ .. ....+.+.+|..-. -+.|+.+|-.++..+.++|+ +++
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD 197 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD 197 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1110 00 01233444443311 13467778889999999998 568
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.+.++|..++.+++.+.+.......+++.+|.+.+. .++||+++++.
T Consensus 198 EPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~--~~~~d~i~il~ 246 (340)
T PRK13536 198 EPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEA--ERLCDRLCVLE 246 (340)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence 89999999999999999988764467889999999875 57999999885
No 35
>PRK07667 uridine kinase; Provisional
Probab=99.48 E-value=8.3e-15 Score=117.31 Aligned_cols=126 Identities=21% Similarity=0.227 Sum_probs=81.3
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH-c---C--CeeeeCCccccccccCCchhHHHHHHHhCCccCCC--CCccchHhHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET-L---G--AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP--DGSIDRKKLG 145 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~-l---g--~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~r~~l~ 145 (212)
++..+|||.|++||||||+++.|.. + | ..+++.|...+.... ....|..-... .-.+++..+.
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~---------~~~~~~~~~~~~~~~~~d~~~L~ 85 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNK---------RYHTGFEEWYEYYYLQWDIEWLR 85 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhh---------HHhcCCCchhhhhhhhhhHHHHH
Confidence 4568999999999999999999975 2 3 457787764322110 00111110000 0123555555
Q ss_pred HHhcCChHHHHHHHhhhhHHHHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 146 AIVFSNKDEMNKLNQAIWPLILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 146 ~~vf~~~~~~~~~~~i~~p~~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
..+|+ .+...+.+.+|.+............ ....++++|++++++.+|.++||.+|+|+||.+
T Consensus 86 ~~v~~---~L~~~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~ 150 (193)
T PRK07667 86 QKFFR---KLQNETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRE 150 (193)
T ss_pred HHHHH---hhcCCCeEEEeeeccccccccccceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHH
Confidence 44444 2223356788988877655443221 346899999999999999999999999999976
No 36
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.48 E-value=3.9e-14 Score=113.29 Aligned_cols=153 Identities=17% Similarity=0.185 Sum_probs=101.4
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCcccc------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLGH------ 111 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~~------ 111 (212)
.+++.++.|+ .-.++++++...+++.+.+++|||||||||++|+|+.+. -..+++..+..
T Consensus 9 ~~~~l~~yYg----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 9 EVRDLNLYYG----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred EecceeEEEC----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 3555666564 337888899999999999999999999999999999872 12222222210
Q ss_pred ----cc----ccCC---chhHH-------------------------------HHHHHhCCccC-CCCCccchHhHHHHh
Q psy17138 112 ----RA----YDVG---TRGNQ-------------------------------VVRELFGEDIA-LPDGSIDRKKLGAIV 148 (212)
Q Consensus 112 ----~~----~~~~---~~~~~-------------------------------~~~~~~g~~~~-~~~~~~~r~~l~~~v 148 (212)
.+ -.|. ...|+ ++-+......+ -+.|+.+|..+++.+
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal 164 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence 00 0000 00111 11111111111 145778899999998
Q ss_pred cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.-.|+ +++++++.++|.....+++.|.+++.+. ++++.+|.|.+| .+..|+.+|+.
T Consensus 165 Av~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~y-TIviVTHnmqQA--aRvSD~taFf~ 222 (253)
T COG1117 165 AVKPEVLLMDEPTSALDPISTLKIEELITELKKKY-TIVIVTHNMQQA--ARVSDYTAFFY 222 (253)
T ss_pred hcCCcEEEecCcccccCchhHHHHHHHHHHHHhcc-EEEEEeCCHHHH--HHHhHhhhhhc
Confidence 88888 7789999999999999999999987555 455559999886 35667766643
No 37
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.45 E-value=1.3e-13 Score=109.21 Aligned_cols=137 Identities=16% Similarity=0.183 Sum_probs=98.1
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc----------ccccCC----------ch
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH----------RAYDVG----------TR 119 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~----------~~~~~~----------~~ 119 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+.. -.|.+. ..
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 94 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLS 94 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCc
Confidence 56778889999999999999999999999999986 433444322210 112111 11
Q ss_pred hHHHHHHHhCCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccc
Q psy17138 120 GNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQ 197 (212)
Q Consensus 120 ~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~ 197 (212)
..+.+ .. +.. -+.|+.+|-.++..+..+|+ +++++.+.+++...+.+.+.+.+.......+++.+|.+.+. .
T Consensus 95 ~~e~l-~~-~~~--LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~--~ 168 (182)
T cd03215 95 VAENI-AL-SSL--LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDEL--L 168 (182)
T ss_pred HHHHH-HH-Hhh--cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--H
Confidence 12111 11 111 25677788889999999998 66889999999999999999987753356788889998653 5
Q ss_pred cccCeEEEEE
Q psy17138 198 DQVHEIWVTF 207 (212)
Q Consensus 198 ~~~d~v~~v~ 207 (212)
++||+++++.
T Consensus 169 ~~~d~v~~l~ 178 (182)
T cd03215 169 GLCDRILVMY 178 (182)
T ss_pred HhCCEEEEec
Confidence 7899999875
No 38
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=7.2e-14 Score=113.22 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=108.4
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccccc---------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRA--------- 113 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~--------- 113 (212)
++.+..++|. .-.++++++++..++|++++|+|+||||||||+|+|+++ |...++...+....
T Consensus 5 ~~~nl~k~yp---~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 5 EVKNLSKTYP---GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred EEeeeeeecC---CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 4666777774 233678889999999999999999999999999999987 44444443321000
Q ss_pred ----------ccCCchh-----------HHHHHHHhCC------------------c-------cCCCCCccchHhHHHH
Q psy17138 114 ----------YDVGTRG-----------NQVVRELFGE------------------D-------IALPDGSIDRKKLGAI 147 (212)
Q Consensus 114 ----------~~~~~~~-----------~~~~~~~~g~------------------~-------~~~~~~~~~r~~l~~~ 147 (212)
+-+.... .+.+...||. . -.-+.|+.+|..+++.
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARa 161 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARA 161 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHH
Confidence 0000000 0011111111 0 0114678889999999
Q ss_pred hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
+.|+|. +-+++-+-++|...+.+.+.+++.. ....++++.-|.+.-+ .++|||++-+..
T Consensus 162 L~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA--~~Y~~Riigl~~ 223 (258)
T COG3638 162 LVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLA--KKYADRIIGLKA 223 (258)
T ss_pred HhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHH--HHHHhhheEecC
Confidence 999998 4578888999999999999998876 5667888989988765 579999886653
No 39
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.44 E-value=1.1e-13 Score=117.97 Aligned_cols=142 Identities=18% Similarity=0.164 Sum_probs=100.9
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------c-ccccCCc-------h----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------H-RAYDVGT-------R---- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~-~~~~~~~-------~---- 119 (212)
..++++++...+|.++||+||||||||||+++|+++ |...++...+. + -.|.++. .
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 356778999999999999999999999999999987 33334332110 0 0011110 0
Q ss_pred -----------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHH
Q psy17138 120 -----------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEE 173 (212)
Q Consensus 120 -----------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~ 173 (212)
....+++.+|..-. -+.|+.+|..++..+.++|+ +++++.+.++|...+.+++.
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 166 (302)
T TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY 166 (302)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 11223444443211 13467778889999999998 56899999999999999999
Q ss_pred HHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 174 IARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 174 i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++.......+++.+|.+.+. .++||+++++.
T Consensus 167 l~~~~~~g~tvi~~sH~~~~~--~~~~d~v~~l~ 198 (302)
T TIGR01188 167 IRALKEEGVTILLTTHYMEEA--DKLCDRIAIID 198 (302)
T ss_pred HHHHHhCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence 988763456888889999774 47899999875
No 40
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.44 E-value=8.2e-14 Score=118.82 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=106.6
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------cccc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------RAYD 115 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~~~~ 115 (212)
+.+.+++|.. ...++++++...+|.++||+||||||||||+++|.++ |...+++..+.. -.|.
T Consensus 5 ~~~l~~~~~~----~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 5 VSSLTKLYGT----QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEECC----EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 4555666632 2467888999999999999999999999999999987 333333321100 0011
Q ss_pred CCc----------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138 116 VGT----------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL 158 (212)
Q Consensus 116 ~~~----------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~ 158 (212)
+.. .....+++.+|..-. -+.|+.+|-.++..+..+|. +++++
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEP 160 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEP 160 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 110 012233344443211 13466778889999999998 56899
Q ss_pred HhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 159 NQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 159 ~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.++|..++.+++.+++... ...+++.+|.+.+. .++||+++++.
T Consensus 161 t~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~--~~~~d~i~~l~ 206 (301)
T TIGR03522 161 TTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEV--EAICDRVIIIN 206 (301)
T ss_pred cccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHH--HHhCCEEEEEE
Confidence 999999999999999988754 47888999999875 47999999875
No 41
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.44 E-value=6.7e-14 Score=121.34 Aligned_cols=157 Identities=16% Similarity=0.149 Sum_probs=108.1
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-----------c
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-----------R 112 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-----------~ 112 (212)
+.+.+++|...+.....++++++...+|.++||+|+||||||||+++|+++ |...++...+.. .
T Consensus 4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~ 83 (343)
T TIGR02314 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQ 83 (343)
T ss_pred EEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence 455666664222223578889999999999999999999999999999987 444444322210 0
Q ss_pred c-c-------cCCchh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--H
Q psy17138 113 A-Y-------DVGTRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--E 154 (212)
Q Consensus 113 ~-~-------~~~~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~ 154 (212)
+ | .+.... ...+++.+|..-. -+.|+.+|-.|+..+..+|+ +
T Consensus 84 Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLL 163 (343)
T TIGR02314 84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL 163 (343)
T ss_pred EEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 0 1 110011 1223344443211 13467788899999999998 5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 155 MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 155 ~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.+.++|.....+.+.+++.. .....+++-+|.+... .++||++++++
T Consensus 164 lDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v--~~~~d~v~vl~ 215 (343)
T TIGR02314 164 CDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVV--KRICDCVAVIS 215 (343)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 688999999999999999998876 3356777779998764 57899999885
No 42
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.44 E-value=1.4e-13 Score=110.83 Aligned_cols=142 Identities=20% Similarity=0.186 Sum_probs=99.4
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----c-ccccCCc--------------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----H-RAYDVGT-------------- 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----~-~~~~~~~-------------- 118 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+..
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l 93 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREEL 93 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHH
Confidence 356778899999999999999999999999999986 33333322210 0 0010000
Q ss_pred -----------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc
Q psy17138 119 -----------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS 178 (212)
Q Consensus 119 -----------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~ 178 (212)
......++.+|..-+ -+.|+.+|-.++..+..+|+ +++++.+.++|...+.+.+.+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 173 (205)
T cd03226 94 LLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173 (205)
T ss_pred hhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 012233444544311 13467778888888888888 6688999999999999999998875
Q ss_pred CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 179 ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 179 ~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.....+++.+|.+.+. ..+||+++++.
T Consensus 174 ~~~~tii~~sH~~~~~--~~~~d~i~~l~ 200 (205)
T cd03226 174 AQGKAVIVITHDYEFL--AKVCDRVLLLA 200 (205)
T ss_pred HCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 3456788889998764 46899999875
No 43
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.41 E-value=2.9e-13 Score=106.42 Aligned_cols=137 Identities=18% Similarity=0.129 Sum_probs=95.5
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc---------ccccCCch-hHHHHHHHh
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH---------RAYDVGTR-GNQVVRELF 128 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~---------~~~~~~~~-~~~~~~~~~ 128 (212)
...+++++...+|.+++|+|+||||||||+++|+++ |...++...+.. -.|.+... .+...+
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv--- 92 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSI--- 92 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcH---
Confidence 356778889999999999999999999999999987 333343322110 01111110 000000
Q ss_pred CCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 129 GEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 129 g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
...+ -+.|+.+|-.++..+..+|+ +++++.+.+++.....+.+.+.+.......+++.+|.+... .+||+++++
T Consensus 93 ~~~l-LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~---~~~d~v~~l 168 (173)
T cd03246 93 AENI-LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL---ASADRILVL 168 (173)
T ss_pred HHHC-cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH---HhCCEEEEE
Confidence 0001 24677788899999999998 56889999999999999999987753356778889988653 479999988
Q ss_pred E
Q psy17138 207 F 207 (212)
Q Consensus 207 ~ 207 (212)
+
T Consensus 169 ~ 169 (173)
T cd03246 169 E 169 (173)
T ss_pred E
Confidence 5
No 44
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.41 E-value=1.7e-13 Score=113.25 Aligned_cols=146 Identities=18% Similarity=0.189 Sum_probs=102.4
Q ss_pred cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeee-CCcc-------------------------
Q psy17138 61 TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLIN-CDQL------------------------- 109 (212)
Q Consensus 61 ~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~-~D~i------------------------- 109 (212)
+...++.+++++.++|.++|++|+||+||||++|+|.|+ |...+. -|..
T Consensus 35 ~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 35 RSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 355788899999999999999999999999999999986 222221 1111
Q ss_pred -------ccccccCCch----hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138 110 -------GHRAYDVGTR----GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ 169 (212)
Q Consensus 110 -------~~~~~~~~~~----~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~ 169 (212)
.+.+|.-+.. ..+.+.+..+.+-+ -+.|+..|..|+..+.++|. .+++++-.++-.....
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ 194 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQAN 194 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHH
Confidence 1111211111 12222333332210 14577778889889999998 4577777788888999
Q ss_pred HHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 170 VKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 170 ~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
+++++++.. ....+|++.+|++.. +..+||+++.++.
T Consensus 195 ir~Flke~n~~~~aTVllTTH~~~d--i~~lc~rv~~I~~ 232 (325)
T COG4586 195 IREFLKEYNEERQATVLLTTHIFDD--IATLCDRVLLIDQ 232 (325)
T ss_pred HHHHHHHHHHhhCceEEEEecchhh--HHHhhhheEEeeC
Confidence 999998876 556799999999954 5689999999875
No 45
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.41 E-value=9.2e-14 Score=122.70 Aligned_cols=153 Identities=16% Similarity=0.124 Sum_probs=106.0
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------ccc-c
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HRA-Y 114 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~~-~ 114 (212)
+.+.+++|.. ...++++++...+|++++|+||||||||||+|+|+++ |...++...+. +.+ |
T Consensus 6 ~~nls~~y~~----~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 6 VSDLSVEFGD----TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred EeeEEEEECC----EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 4455555531 2467788999999999999999999999999999986 33333321110 000 0
Q ss_pred cC-----------------------------Cc---hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138 115 DV-----------------------------GT---RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 115 ~~-----------------------------~~---~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-- 153 (212)
.+ .. ......++.+|..-+ -+.|+.+|..|+..+.++|+
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iL 161 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVL 161 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 00 00 012233344443211 13467788899999999998
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.++|....++.+.++++......+++.+|.+.++ ..+||++|+++
T Consensus 162 LLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~--~~~adrii~l~ 213 (402)
T PRK09536 162 LLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLA--ARYCDELVLLA 213 (402)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence 56889999999999999999988763456888889999875 47899999885
No 46
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.41 E-value=2.3e-13 Score=116.13 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=105.0
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------cc-cc
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------HR-AY 114 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~~-~~ 114 (212)
.+.+.+++|.. ...++++++...+|.++||+|+||||||||+++|+++ |...+++..+. +. .|
T Consensus 6 ~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 6 DLVGVSKSYGD----KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred EEEeEEEEeCC----eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 35555566631 2467888999999999999999999999999999986 33333321110 00 01
Q ss_pred cCC-------chh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHH
Q psy17138 115 DVG-------TRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNK 157 (212)
Q Consensus 115 ~~~-------~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~ 157 (212)
.++ ... ...+.+.+|..-. -+.|+.+|-.++..+..+|+ ++++
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE 161 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 110 000 1122333443211 12366778889989999998 5689
Q ss_pred HHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 158 LNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 158 ~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.++|.....+.+.+.+.......+++.+|.+.+. .++||+++++.
T Consensus 162 Pt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~--~~~~d~i~~l~ 209 (303)
T TIGR01288 162 PTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEA--ERLCDRLCVLE 209 (303)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence 9999999999999999988754456788889999764 57899999875
No 47
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=3.7e-13 Score=108.96 Aligned_cols=153 Identities=16% Similarity=0.131 Sum_probs=103.4
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------cccccC
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------HRAYDV 116 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~~~~~~ 116 (212)
+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +-.|.+
T Consensus 3 ~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 78 (213)
T cd03259 3 LKGLSKTYGS----VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVF 78 (213)
T ss_pred eeeeEEEeCC----eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEc
Confidence 3444555531 1367888999999999999999999999999999986 33333322110 000111
Q ss_pred Cc-------h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHH
Q psy17138 117 GT-------R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLN 159 (212)
Q Consensus 117 ~~-------~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~ 159 (212)
.. . ....+++.+|..-. -+.|+.+|-.++..+..+|+ +++++.
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt 158 (213)
T cd03259 79 QDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPL 158 (213)
T ss_pred CchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 10 0 01223344443211 13467778889988999988 668999
Q ss_pred hhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 160 QAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 160 ~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+++.....+.+.+.+.. .....+++.+|.+.+. .++||+++++.
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~--~~~~d~v~~l~ 205 (213)
T cd03259 159 SALDAKLREELREELKELQRELGITTIYVTHDQEEA--LALADRIAVMN 205 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH--HHhcCEEEEEE
Confidence 9999999999999998765 3356777889998653 47899999875
No 48
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=2.4e-13 Score=110.66 Aligned_cols=142 Identities=20% Similarity=0.209 Sum_probs=97.6
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc---ccc-cccCC-------ch--------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL---GHR-AYDVG-------TR-------- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i---~~~-~~~~~-------~~-------- 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+ .+. .|.++ ..
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 97 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALG 97 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHH
Confidence 356778899999999999999999999999999987 3223322111 000 01000 00
Q ss_pred -------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhh
Q psy17138 120 -------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARL 177 (212)
Q Consensus 120 -------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~ 177 (212)
.....++.+|..-. -+.|+.+|..++..+..+|+ +++++.+.++|.....+.+.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~ 177 (220)
T cd03293 98 LELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDI 177 (220)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 11223344443211 13356678889989999988 568899999999999999999876
Q ss_pred c-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 178 S-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 178 ~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
. .....+++.+|.+.+. .++||++++++
T Consensus 178 ~~~~~~tiii~sH~~~~~--~~~~d~i~~l~ 206 (220)
T cd03293 178 WRETGKTVLLVTHDIDEA--VFLADRVVVLS 206 (220)
T ss_pred HHHcCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 4 3356777779998653 47899999886
No 49
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.40 E-value=1.6e-13 Score=106.95 Aligned_cols=135 Identities=16% Similarity=0.115 Sum_probs=94.9
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC-----CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCcc
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG-----AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSI 139 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg-----~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 139 (212)
.++++++...+|++++|+|+||||||||+++|+++- ...++...+... ...+......+.-..-+.|+.
T Consensus 15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~------~~~~~~~~~i~~~~qLS~G~~ 88 (163)
T cd03216 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA------SPRDARRAGIAMVYQLSVGER 88 (163)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcC------CHHHHHhcCeEEEEecCHHHH
Confidence 567788899999999999999999999999999872 223332211100 000000011111000256778
Q ss_pred chHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 140 DRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 140 ~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+|-.++..+..+|+ +++++.+.+++...+.+.+.+++.......+++.+|.+.+. ..+||+++++.
T Consensus 89 qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~--~~~~d~~~~l~ 156 (163)
T cd03216 89 QMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV--FEIADRVTVLR 156 (163)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 88899999999998 56888999999999999999987753356777779998653 46899999885
No 50
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.40 E-value=8.1e-13 Score=104.35 Aligned_cols=142 Identities=17% Similarity=0.061 Sum_probs=100.2
Q ss_pred ccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-CCeeeeCCc-c-c--cccccCCchhHHHHHHHhCCcc--
Q psy17138 60 GTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-GAGLINCDQ-L-G--HRAYDVGTRGNQVVRELFGEDI-- 132 (212)
Q Consensus 60 g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-g~~vi~~D~-i-~--~~~~~~~~~~~~~~~~~~g~~~-- 132 (212)
|....+++++++...+|.+++|+||||||||||++++..- |...+.... . . .-.|.+. .+.++.+|...
T Consensus 5 ~~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q----~~~l~~~~L~~~~ 80 (176)
T cd03238 5 GANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ----LQFLIDVGLGYLT 80 (176)
T ss_pred ceeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH----HHHHHHcCCCccc
Confidence 5566778889999999999999999999999999998531 333333221 0 0 0112221 34566666432
Q ss_pred CC------CCCccchHhHHHHhcCC--hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCe
Q psy17138 133 AL------PDGSIDRKKLGAIVFSN--KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHE 202 (212)
Q Consensus 133 ~~------~~~~~~r~~l~~~vf~~--~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~ 202 (212)
.. +.|+.+|-.++..+..+ |+ +++++.+.+++...+.+.+.+++.......+++-+|.+.+. ..||+
T Consensus 81 ~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~---~~~d~ 157 (176)
T cd03238 81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL---SSADW 157 (176)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH---HhCCE
Confidence 11 22456788888889999 87 56888999999999999998887653456777779988653 47999
Q ss_pred EEEEEe
Q psy17138 203 IWVTFI 208 (212)
Q Consensus 203 v~~v~~ 208 (212)
++++.-
T Consensus 158 i~~l~~ 163 (176)
T cd03238 158 IIDFGP 163 (176)
T ss_pred EEEECC
Confidence 988753
No 51
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=2.4e-13 Score=117.99 Aligned_cols=157 Identities=18% Similarity=0.186 Sum_probs=105.7
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR 112 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~ 112 (212)
+.+.+++|...+.....++++++...+|.++||+|+||||||||+++|+++ |...++...+. +.
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 83 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQ 83 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence 445555553111122467888999999999999999999999999999987 33333322111 00
Q ss_pred -cccCC-------ch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--H
Q psy17138 113 -AYDVG-------TR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--E 154 (212)
Q Consensus 113 -~~~~~-------~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~ 154 (212)
.|.++ .. ....+++.+|..-. -+.|+.+|-.|+..+..+|+ +
T Consensus 84 ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLl 163 (343)
T PRK11153 84 IGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL 163 (343)
T ss_pred EEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 01100 00 11123344443211 13467778889999999998 5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 155 MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 155 ~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.+.++|.....+.+.+.+.. .....+++.+|.+.+. .++||+++++.
T Consensus 164 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i--~~~~d~v~~l~ 215 (343)
T PRK11153 164 CDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVV--KRICDRVAVID 215 (343)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 688999999999999999998875 3356788889998764 57899999885
No 52
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.39 E-value=3.6e-13 Score=109.34 Aligned_cols=141 Identities=15% Similarity=0.112 Sum_probs=98.7
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c-ccccC-------Cc
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H-RAYDV-------GT 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~-~~~~~-------~~ 118 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+ ..
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL 97 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCC
Confidence 356778899999999999999999999999999987 33333321110 0 00100 00
Q ss_pred h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 119 R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 119 ~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
. .....++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.++|....
T Consensus 98 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (218)
T cd03255 98 TALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177 (218)
T ss_pred cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHH
Confidence 0 11223344443211 13467778889999999998 668999999999999
Q ss_pred HHHHHHHhhcC-CCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLSE-SHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~~-~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+.+... ....+++.+|.+.+. . +||+++++.
T Consensus 178 ~l~~~l~~~~~~~~~tii~~sH~~~~~--~-~~d~v~~l~ 214 (218)
T cd03255 178 EVMELLRELNKEAGTTIVVVTHDPELA--E-YADRIIELR 214 (218)
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHH--h-hhcEEEEee
Confidence 99999988753 456888889998764 3 899999885
No 53
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=5.2e-13 Score=109.89 Aligned_cols=144 Identities=19% Similarity=0.166 Sum_probs=104.1
Q ss_pred cCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-----------ccccCC
Q psy17138 63 RKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-----------RAYDVG 117 (212)
Q Consensus 63 l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-----------~~~~~~ 117 (212)
...++++++...+|..++|+|+|||||||++++|+++ |...++.-.+. + .++.+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t 96 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT 96 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence 4667788999999999999999999999999999997 33334322111 0 000000
Q ss_pred -------------------chhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138 118 -------------------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ 169 (212)
Q Consensus 118 -------------------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~ 169 (212)
...........|..-+ -+.|+.+|..|+..+..+|+ +++++.+.++|..+++
T Consensus 97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~ 176 (235)
T COG1122 97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176 (235)
T ss_pred HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHH
Confidence 0012233334443211 14678899999998888888 6689999999999999
Q ss_pred HHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 170 VKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 170 ~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
+.+.+.++. .....+++-+|.+... ..+||++|+++-
T Consensus 177 l~~~l~~L~~~~~~tii~~tHd~~~~--~~~ad~v~vl~~ 214 (235)
T COG1122 177 LLELLKKLKEEGGKTIIIVTHDLELV--LEYADRVVVLDD 214 (235)
T ss_pred HHHHHHHHHhcCCCeEEEEeCcHHHH--HhhCCEEEEEEC
Confidence 999999987 4457888889999774 578999999864
No 54
>PRK06696 uridine kinase; Validated
Probab=99.39 E-value=1.9e-13 Score=111.81 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=81.5
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH-c---CCeee--eCCccccccccCCchhHHHHHHHhCCccCC--CCCccchHhH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET-L---GAGLI--NCDQLGHRAYDVGTRGNQVVRELFGEDIAL--PDGSIDRKKL 144 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~-l---g~~vi--~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~r~~l 144 (212)
..++.+|||.|++||||||+++.|+. | |..++ ++|... ... ......|..-.. ..+.+|+..|
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~-----~~~----~~r~~~~~~~~~g~~~~~~d~~~L 89 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH-----NPR----VIRYRRGRESAEGYYEDAYDYTAL 89 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc-----CCH----HHHHHcCCCChhhcCccccCHHHH
Confidence 55689999999999999999999984 4 55544 366422 111 111122211100 0246888888
Q ss_pred HHHhcC--ChHHHHHHHhhhhHHHHHHHHH-HHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 145 GAIVFS--NKDEMNKLNQAIWPLILAQVKE-EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 145 ~~~vf~--~~~~~~~~~~i~~p~~~~~~~~-~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
...+|. ++.....++..+|+...+.... ..... ....++++|++++++.+++++||.+|+|+||.+
T Consensus 90 ~~~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e 158 (223)
T PRK06696 90 RRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLA-APNAVLIVDGTFLLRPELRDLWDYKIFLDTDFE 158 (223)
T ss_pred HHHHHhhccCCCceeEeeeeeccccCcccCCCceec-CCCCEEEEecHHHhhhhHHhhCCEEEEEECCHH
Confidence 888876 3322222344455554433221 11111 456799999999999889999999999999975
No 55
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.39 E-value=4.7e-13 Score=108.17 Aligned_cols=141 Identities=18% Similarity=0.190 Sum_probs=97.9
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-cccCCc--------h---
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR-AYDVGT--------R--- 119 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~-~~~~~~--------~--- 119 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .|.+.. .
T Consensus 16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~ 95 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEE 95 (211)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHH
Confidence 56778899999999999999999999999999986 33334322110 00 011100 0
Q ss_pred ------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHH
Q psy17138 120 ------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKE 172 (212)
Q Consensus 120 ------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~ 172 (212)
....+++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.+++.....+.+
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~ 175 (211)
T cd03225 96 EVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE 175 (211)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 01123333443211 12356778888888999988 5689999999999999999
Q ss_pred HHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 173 EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 173 ~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.......+++.+|.+.+. ..+||+++++.
T Consensus 176 ~l~~~~~~~~tvi~~sH~~~~~--~~~~d~i~~l~ 208 (211)
T cd03225 176 LLKKLKAEGKTIIIVTHDLDLL--LELADRVIVLE 208 (211)
T ss_pred HHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence 9987753356788889998764 46899999875
No 56
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.39 E-value=3.9e-12 Score=103.70 Aligned_cols=133 Identities=12% Similarity=0.133 Sum_probs=97.3
Q ss_pred eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc---------ccCCchhHHHHHHHhCCccCCCCCc----cchH
Q psy17138 77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA---------YDVGTRGNQVVRELFGEDIALPDGS----IDRK 142 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~~----~~r~ 142 (212)
.+|+|+||+||||||+++.|+ .+|+.+++++.+.+.+ ...+..........++......++. +++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNGE 82 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcCc
Confidence 689999999999999999998 4899999988765433 1122233445566677665433433 6788
Q ss_pred hHHHHhcCChHHHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 143 KLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 143 ~l~~~vf~~~~~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
.++..++++.-.........+|.++..+.+.++++... .-+|+++..+-.. +...+|.++|+++|.+
T Consensus 83 ~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~-~~~Vi~Gr~~~~~-v~~~a~~~ifl~a~~~ 149 (217)
T TIGR00017 83 DVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKN-DGIIADGRDIGTV-VFPNAEVKIFLDASVE 149 (217)
T ss_pred chHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-CCEEEEEcCcceE-EeCCCCEEEEEECCHH
Confidence 88888888887766777789999999999998887533 3588889964432 2233789999999875
No 57
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.39 E-value=5.1e-13 Score=120.22 Aligned_cols=157 Identities=20% Similarity=0.177 Sum_probs=110.5
Q ss_pred ceechhhhhhhhc-------cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------
Q psy17138 48 KLSSSNLRMRELG-------TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------ 109 (212)
Q Consensus 48 ~iss~~~r~~~~g-------~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------ 109 (212)
++.+..++|...+ ...++++++++...+|+++||+|+|||||||++|+|.+| |..+++...+
T Consensus 282 ~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~ 361 (539)
T COG1123 282 SVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGE 361 (539)
T ss_pred EeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccch
Confidence 3777888887532 356888999999999999999999999999999999998 4455554331
Q ss_pred ----cccc---c-------cCCch----------------------hHHHHHHHhCCcc--------CCCCCccchHhHH
Q psy17138 110 ----GHRA---Y-------DVGTR----------------------GNQVVRELFGEDI--------ALPDGSIDRKKLG 145 (212)
Q Consensus 110 ----~~~~---~-------~~~~~----------------------~~~~~~~~~g~~~--------~~~~~~~~r~~l~ 145 (212)
.+.. + .|... ....+.+..|.+- .-+.|+.+|-.++
T Consensus 362 ~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIA 441 (539)
T COG1123 362 LRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIA 441 (539)
T ss_pred hhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHH
Confidence 0000 1 01000 1112222222211 1256888999999
Q ss_pred HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+..+|. ..+++...++|.+...+.+.+.+++ -+-.++|| +|.|.-. +.+||++++++
T Consensus 442 RALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfI-SHDl~vV--~~i~drv~vm~ 504 (539)
T COG1123 442 RALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFI-SHDLAVV--RYIADRVAVMY 504 (539)
T ss_pred HHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEE-eCCHHHH--HhhCceEEEEE
Confidence 99999998 4477888999999999999988887 34567777 8887543 57999999886
No 58
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.39 E-value=7.3e-13 Score=106.48 Aligned_cols=140 Identities=18% Similarity=0.147 Sum_probs=98.3
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-------CCeeeeCCcccc----------ccccCCc------hh
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-------GAGLINCDQLGH----------RAYDVGT------RG 120 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-------g~~vi~~D~i~~----------~~~~~~~------~~ 120 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+.. -.|.+.. ..
T Consensus 14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (200)
T cd03217 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVK 93 (200)
T ss_pred EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCcc
Confidence 367788999999999999999999999999999986 223344322211 1122221 11
Q ss_pred HHHHHHHhCCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecccccccccc
Q psy17138 121 NQVVRELFGEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQD 198 (212)
Q Consensus 121 ~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~ 198 (212)
.......+...+ +.|+.+|..++..+..+|+ +++++.+.+++...+.+.+.+.+.......+++.+|.+... .+
T Consensus 94 ~~~~l~~~~~~L--S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~--~~ 169 (200)
T cd03217 94 NADFLRYVNEGF--SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLL--DY 169 (200)
T ss_pred HHHHHhhccccC--CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH--HH
Confidence 122222222222 4577788899999999998 56889999999999999999887753356788889988654 45
Q ss_pred -ccCeEEEEE
Q psy17138 199 -QVHEIWVTF 207 (212)
Q Consensus 199 -~~d~v~~v~ 207 (212)
+||+++++.
T Consensus 170 ~~~d~i~~l~ 179 (200)
T cd03217 170 IKPDRVHVLY 179 (200)
T ss_pred hhCCEEEEEE
Confidence 699998885
No 59
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.39 E-value=5e-13 Score=108.50 Aligned_cols=142 Identities=13% Similarity=0.164 Sum_probs=98.2
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------c-ccccCC-------ch----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------H-RAYDVG-------TR---- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~-~~~~~~-------~~---- 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+. ..
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 356778899999999999999999999999999987 33333321110 0 001000 00
Q ss_pred -----------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHH
Q psy17138 120 -----------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEE 173 (212)
Q Consensus 120 -----------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~ 173 (212)
.....++.+|..-. -+.|+.+|..++..+..+|+ +++++.+.+++...+.+.+.
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~ 178 (218)
T cd03266 99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF 178 (218)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 11223344443211 13466778888889999998 66889999999999999999
Q ss_pred HHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 174 IARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 174 i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.......+++.+|.+.+. .++||+++++.
T Consensus 179 l~~~~~~~~tii~~tH~~~~~--~~~~d~i~~l~ 210 (218)
T cd03266 179 IRQLRALGKCILFSTHIMQEV--ERLCDRVVVLH 210 (218)
T ss_pred HHHHHHCCCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence 988753356788889988664 46899999875
No 60
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=2.5e-13 Score=118.13 Aligned_cols=156 Identities=13% Similarity=0.063 Sum_probs=108.9
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------ccc-
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HRA- 113 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~~- 113 (212)
...+++.+++|.. ...++++++...+|++++|+||||||||||+++|+++ |...++...+. +.+
T Consensus 6 ~l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS----NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred EEEEEeEEEEECC----eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 3446677777642 2357788999999999999999999999999999987 44444432221 000
Q ss_pred -------ccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138 114 -------YDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN 156 (212)
Q Consensus 114 -------~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~ 156 (212)
+.+... ....+++.+|..-+ -+.|+.+|..|++.+..+|+ +++
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLD 161 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFD 161 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 011100 11223344443221 13467788899999999998 568
Q ss_pred HHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 157 KLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.+.+++..+..+++.++++. .....+++.+|.+.++ ..+||++++++
T Consensus 162 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~--~~laD~i~vm~ 211 (351)
T PRK11432 162 EPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEA--FAVSDTVIVMN 211 (351)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH--HHhCCEEEEEE
Confidence 8899999999999999988775 3356778889999885 47899999886
No 61
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.38 E-value=4.6e-13 Score=105.85 Aligned_cols=120 Identities=20% Similarity=0.146 Sum_probs=88.4
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHH
Q psy17138 71 HLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLG 145 (212)
Q Consensus 71 ~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~ 145 (212)
+...+|++++|+|+||||||||+++|+++ |...++...+. |.+.. ..-+.|+.+|..++
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~---~~~q~-------------~~LSgGq~qrv~la 83 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV---YKPQY-------------IDLSGGELQRVAIA 83 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEE---EEccc-------------CCCCHHHHHHHHHH
Confidence 56788999999999999999999999987 22223221111 11110 00256777888899
Q ss_pred HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
..+..+|+ +++++.+.+++...+.+.+.+.+.. .....+++.+|.+.+. ..+||+++++.-
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~--~~~~d~i~~l~~ 147 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVL--DYLSDRIHVFEG 147 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHH--HHhCCEEEEEcC
Confidence 88888888 5688899999999999999988765 3336777889998664 468999988864
No 62
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.38 E-value=3e-13 Score=126.58 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=106.3
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------ccc
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------GHR 112 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------~~~ 112 (212)
.-.+++.+++|...+. ..++++++..+.|+++||+|.||||||||+|+|.++ |...+|.-++ .+.
T Consensus 471 ~I~~~nvsf~y~~~~~--~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ 548 (709)
T COG2274 471 EIEFENVSFRYGPDDP--PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548 (709)
T ss_pred eEEEEEEEEEeCCCCc--chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence 3567777777754322 567889999999999999999999999999999997 3334443222 111
Q ss_pred c-ccCC------ch------------hHHHH------------HH-----------HhCCccCCCCCccchHhHHHHhcC
Q psy17138 113 A-YDVG------TR------------GNQVV------------RE-----------LFGEDIALPDGSIDRKKLGAIVFS 150 (212)
Q Consensus 113 ~-~~~~------~~------------~~~~~------------~~-----------~~g~~~~~~~~~~~r~~l~~~vf~ 150 (212)
+ |.++ +. ..+++ +. ..|..+ +.|+.+|-.|++.+.+
T Consensus 549 ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~L--SGGQrQrlalARaLl~ 626 (709)
T COG2274 549 VGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANL--SGGQRQRLALARALLS 626 (709)
T ss_pred eeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCC--CHHHHHHHHHHHHhcc
Confidence 1 1110 00 01111 11 111111 4578899999999999
Q ss_pred ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 151 NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
+|. ++++.++-+++...+.+.+.+.+...+ +++++-+|-+.-- +.||++++++-
T Consensus 627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~-~T~I~IaHRl~ti---~~adrIiVl~~ 682 (709)
T COG2274 627 KPKILLLDEATSALDPETEAIILQNLLQILQG-RTVIIIAHRLSTI---RSADRIIVLDQ 682 (709)
T ss_pred CCCEEEEeCcccccCHhHHHHHHHHHHHHhcC-CeEEEEEccchHh---hhccEEEEccC
Confidence 999 668899999999999998888877544 5666658877543 58999998763
No 63
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.38 E-value=8.1e-13 Score=108.27 Aligned_cols=142 Identities=16% Similarity=0.177 Sum_probs=97.6
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-ccccCCc-------h--
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RAYDVGT-------R-- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~~~~~~-------~-- 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+.. .
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVE 93 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHH
Confidence 367788999999999999999999999999999986 33333321110 0 0011110 0
Q ss_pred -------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHH
Q psy17138 120 -------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVK 171 (212)
Q Consensus 120 -------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~ 171 (212)
....+++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.+++...+.+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~ 173 (232)
T cd03218 94 ENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 01223333443211 12356677888888888888 568899999999999999
Q ss_pred HHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 172 EEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 172 ~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+++.......+++.+|.+.+. ..+||+++++.
T Consensus 174 ~~l~~~~~~~~tii~~sH~~~~~--~~~~d~i~~l~ 207 (232)
T cd03218 174 KIIKILKDRGIGVLITDHNVRET--LSITDRAYIIY 207 (232)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 99887753456788889988653 57899998875
No 64
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=6e-13 Score=108.33 Aligned_cols=142 Identities=18% Similarity=0.170 Sum_probs=97.9
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------c-ccccCC-------ch----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------H-RAYDVG-------TR---- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~-~~~~~~-------~~---- 119 (212)
..++++++...+|++++|+|+||||||||+++|+++ |...++...+. + -.|.+. ..
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWEN 93 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHH
Confidence 356788899999999999999999999999999986 32333321110 0 001111 00
Q ss_pred -----------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHH
Q psy17138 120 -----------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEE 173 (212)
Q Consensus 120 -----------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~ 173 (212)
....+++.+|..-. -+.|+.+|..++..+..+|+ +++++.+.+++.....+.+.
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (220)
T cd03265 94 LYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEY 173 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH
Confidence 11223344443211 13467778889989999998 56889999999999999999
Q ss_pred HHhhcCC-CcEEEEEeccccccccccccCeEEEEE
Q psy17138 174 IARLSES-HKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 174 i~~~~~~-~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.... ...+++.+|.+.+. ..+||+++++.
T Consensus 174 l~~~~~~~~~tvi~~tH~~~~~--~~~~d~i~~l~ 206 (220)
T cd03265 174 IEKLKEEFGMTILLTTHYMEEA--EQLCDRVAIID 206 (220)
T ss_pred HHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence 8877532 55777779988763 46899998875
No 65
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.38 E-value=5.5e-13 Score=108.19 Aligned_cols=141 Identities=12% Similarity=0.101 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc-cccCC-------ch-
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR-AYDVG-------TR- 119 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~-~~~~~-------~~- 119 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .|.+. ..
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTV 97 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccH
Confidence 56778899999999999999999999999999987 33333321110 00 01110 00
Q ss_pred --------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHH
Q psy17138 120 --------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQV 170 (212)
Q Consensus 120 --------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~ 170 (212)
.....++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.+++.....+
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 177 (216)
T TIGR00960 98 YDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDI 177 (216)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence 01122333443211 12367778889999999998 66899999999999999
Q ss_pred HHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 171 KEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 171 ~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+.......+++.+|.+.+. ..+||+++++.
T Consensus 178 ~~~l~~~~~~~~tii~vsH~~~~~--~~~~d~i~~l~ 212 (216)
T TIGR00960 178 MRLFEEFNRRGTTVLVATHDINLV--ETYRHRTLTLS 212 (216)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence 999987753356777779998654 46899999875
No 66
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=5.3e-13 Score=109.70 Aligned_cols=142 Identities=18% Similarity=0.146 Sum_probs=98.0
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc-cccCC-------ch
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR-AYDVG-------TR 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~-~~~~~-------~~ 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .|.+. ..
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLT 93 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCc
Confidence 356788899999999999999999999999999986 33333321110 00 01111 00
Q ss_pred h----------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 120 G----------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 120 ~----------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
. ....++.+|..-. -+.|+.+|..++..+..+|+ +++++.+.+++....
T Consensus 94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~ 173 (235)
T cd03261 94 VFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG 173 (235)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 0 1122333443211 12357778889989999988 668999999999999
Q ss_pred HHHHHHHhhcC-CCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLSE-SHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~~-~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+++... ....+++.+|.+.+. ..+||+++++.
T Consensus 174 ~l~~~l~~~~~~~~~tvi~vsH~~~~~--~~~~d~v~~l~ 211 (235)
T cd03261 174 VIDDLIRSLKKELGLTSIMVTHDLDTA--FAIADRIAVLY 211 (235)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHH--HHhcCEEEEEE
Confidence 99999987753 356777779998764 57899999885
No 67
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=8.1e-13 Score=103.83 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=95.9
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------ccccCCch-hHH--HHHHHh
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------RAYDVGTR-GNQ--VVRELF 128 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~~~~~~~~-~~~--~~~~~~ 128 (212)
.++++++...+|++++|+|+||||||||+++|+++ |...++...+.. -.|.++.. .+. .+.+.
T Consensus 15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~- 93 (173)
T cd03230 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVREN- 93 (173)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHH-
Confidence 56778899999999999999999999999999986 333343322210 01111110 000 00000
Q ss_pred CCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 129 GEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 129 g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
+.-+.|+.+|-.++..+..+|+ +++++.+.+++...+.+.+.+++.......+++.+|...+. ..+||+++++
T Consensus 94 ---~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~--~~~~d~i~~l 168 (173)
T cd03230 94 ---LKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEA--ERLCDRVAIL 168 (173)
T ss_pred ---hhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH--HHhCCEEEEE
Confidence 0024577788889999999998 66889999999999999999988753346777778987654 4689999988
Q ss_pred E
Q psy17138 207 F 207 (212)
Q Consensus 207 ~ 207 (212)
.
T Consensus 169 ~ 169 (173)
T cd03230 169 N 169 (173)
T ss_pred e
Confidence 6
No 68
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=3e-13 Score=117.93 Aligned_cols=155 Identities=15% Similarity=0.112 Sum_probs=106.4
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------cc---
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------RA--- 113 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------~~--- 113 (212)
.+.+.+++|. + ....++++++...+|.+++|+||||||||||+++|+++ |...++...+.. .+
T Consensus 5 ~i~~l~~~~~--~-~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 81 (356)
T PRK11650 5 KLQAVRKSYD--G-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMV 81 (356)
T ss_pred EEEeEEEEeC--C-CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 3555556652 1 12356778899999999999999999999999999987 433444322210 00
Q ss_pred -----ccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138 114 -----YDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL 158 (212)
Q Consensus 114 -----~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~ 158 (212)
+.+... ....+++.+|..-+ -+.|+.+|..|+..+..+|+ +++++
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP 161 (356)
T PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161 (356)
T ss_pred eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 011100 11233444444321 13467789999999999998 56888
Q ss_pred HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+++..+..+.+.++++. .....+++.+|.+.++ ..+||+++++.
T Consensus 162 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea--~~l~D~i~vl~ 209 (356)
T PRK11650 162 LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEA--MTLADRVVVMN 209 (356)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence 89999999999999888775 3356777779999775 57999999875
No 69
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.37 E-value=5.2e-13 Score=105.60 Aligned_cols=141 Identities=19% Similarity=0.140 Sum_probs=97.5
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccccc---ccCCchhHHHHHHHhCCccC---
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRA---YDVGTRGNQVVRELFGEDIA--- 133 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~---~~~~~~~~~~~~~~~g~~~~--- 133 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+.... +...-....+.++.+|..-.
T Consensus 14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~ 93 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADR 93 (180)
T ss_pred eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcC
Confidence 56778889999999999999999999999999987 33344432221100 00000011113344443211
Q ss_pred ----CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCC-CcEEEEEeccccccccccccCeEEEE
Q psy17138 134 ----LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSES-HKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 134 ----~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~-~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
-+.|+.+|-.++..+..+|+ +++++.+.+++.....+.+.+.+.... ...+++.+|.+.+. .++||+++++
T Consensus 94 ~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~--~~~~d~~~~l 171 (180)
T cd03214 94 PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA--ARYADRVILL 171 (180)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEE
Confidence 13467778889988999998 568899999999999999988877532 45777778988764 4689999987
Q ss_pred E
Q psy17138 207 F 207 (212)
Q Consensus 207 ~ 207 (212)
.
T Consensus 172 ~ 172 (180)
T cd03214 172 K 172 (180)
T ss_pred E
Confidence 5
No 70
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.37 E-value=6.9e-13 Score=108.14 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=107.3
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccccc-----ccCC
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRA-----YDVG 117 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~-----~~~~ 117 (212)
.+.+++++|+.. .+++++++..+.|+++|++|+||+||||++|+|.++ |...+++..+.... |.|.
T Consensus 4 ~ie~vtK~Fg~k----~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPE 79 (300)
T COG4152 4 EIEGVTKSFGDK----KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPE 79 (300)
T ss_pred EEecchhccCce----eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChh
Confidence 477888888743 788999999999999999999999999999999986 44455554433222 2222
Q ss_pred c-------hh---------------------HHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHh
Q psy17138 118 T-------RG---------------------NQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQ 160 (212)
Q Consensus 118 ~-------~~---------------------~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~ 160 (212)
. .. .+.+.+.+...... +.|..++-.+-..+.+.|+ .++++-+
T Consensus 80 ERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS 159 (300)
T COG4152 80 ERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS 159 (300)
T ss_pred hhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc
Confidence 1 01 11222222211110 1233344444457778887 4567777
Q ss_pred hhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 161 AIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 161 i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.++|.-.+.+++.|.+.+.....+++.+|.|-.. ..+||++..+.
T Consensus 160 GLDPVN~elLk~~I~~lk~~GatIifSsH~Me~v--EeLCD~llmL~ 204 (300)
T COG4152 160 GLDPVNVELLKDAIFELKEEGATIIFSSHRMEHV--EELCDRLLMLK 204 (300)
T ss_pred CCChhhHHHHHHHHHHHHhcCCEEEEecchHHHH--HHHhhhhheec
Confidence 8999999999999988886778999999999765 57999987764
No 71
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.36 E-value=9.5e-13 Score=106.57 Aligned_cols=142 Identities=14% Similarity=0.150 Sum_probs=97.9
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc-cccCCc-------h
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR-AYDVGT-------R 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~-~~~~~~-------~ 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .|.+.. .
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRT 95 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCc
Confidence 367788899999999999999999999999999987 32333321110 00 111110 0
Q ss_pred ---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138 120 ---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ 169 (212)
Q Consensus 120 ---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~ 169 (212)
....+++.+|..-. -+.|+.+|..++..+..+|+ +++++.+.+++..+..
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 175 (214)
T TIGR02673 96 VYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER 175 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHH
Confidence 01122333343211 12356778888888889988 6688999999999999
Q ss_pred HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.+++.......+++.+|.+.+. ..+||++++++
T Consensus 176 l~~~l~~~~~~~~tii~~tH~~~~~--~~~~d~i~~l~ 211 (214)
T TIGR02673 176 ILDLLKRLNKRGTTVIVATHDLSLV--DRVAHRVIILD 211 (214)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHH--HHhcCEEEEec
Confidence 9999988753356788889998764 46899999875
No 72
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.36 E-value=3.6e-13 Score=117.30 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=106.8
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------cc---
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------RA--- 113 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------~~--- 113 (212)
.+.+.+++|.. ...++++++....|.+++|+||||||||||+++|+++ |...+++..+.. .+
T Consensus 6 ~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 6 SIDNIRKRFGA----FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred EEEEEEEEeCC----eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 35555666631 1346778899999999999999999999999999987 434444322210 00
Q ss_pred -----ccCCc---------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138 114 -----YDVGT---------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL 158 (212)
Q Consensus 114 -----~~~~~---------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~ 158 (212)
+.+.. .....+++.+|..-+ -+.|+.+|..|+..+..+|+ +++++
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP 161 (353)
T TIGR03265 82 FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEP 161 (353)
T ss_pred eCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 01110 012233444443321 13467788899999999998 66888
Q ss_pred HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
...+++..++.+++.+++.. .....+++.+|.+.++ ..+||++++++
T Consensus 162 ~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea--~~l~d~i~vl~ 209 (353)
T TIGR03265 162 LSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEA--LSMADRIVVMN 209 (353)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH--HHhCCEEEEEE
Confidence 89999999999999988775 3355777779999875 57899999886
No 73
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=9e-13 Score=103.39 Aligned_cols=134 Identities=24% Similarity=0.240 Sum_probs=95.1
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc---------ccccCCchhHHHHHHHhC
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH---------RAYDVGTRGNQVVRELFG 129 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~---------~~~~~~~~~~~~~~~~~g 129 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+.+ -.|.+.... .+.
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~------~~~ 89 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPF------LFS 89 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCch------hcc
Confidence 367778899999999999999999999999999987 333343322211 011111100 011
Q ss_pred CccC---CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEE
Q psy17138 130 EDIA---LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIW 204 (212)
Q Consensus 130 ~~~~---~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~ 204 (212)
..+. -+.|+.+|-.++..+..+|+ +++++.+.+++...+.+.+.+.+... ...+++.+|.+.+. .. ||+++
T Consensus 90 ~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~--~~-~d~~~ 165 (171)
T cd03228 90 GTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLSTI--RD-ADRII 165 (171)
T ss_pred chHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHH--Hh-CCEEE
Confidence 1110 24567778889988999998 56889999999999999999987753 46788889998765 34 99998
Q ss_pred EEE
Q psy17138 205 VTF 207 (212)
Q Consensus 205 ~v~ 207 (212)
++.
T Consensus 166 ~l~ 168 (171)
T cd03228 166 VLD 168 (171)
T ss_pred EEc
Confidence 875
No 74
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.36 E-value=4.3e-13 Score=117.11 Aligned_cols=155 Identities=17% Similarity=0.099 Sum_probs=108.2
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-------CCeeeeCCccc------ccc
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-------GAGLINCDQLG------HRA 113 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-------g~~vi~~D~i~------~~~ 113 (212)
..+++.+++|.. ...++++++....|.+++|+||||||||||+++|+++ |...++...+. +.+
T Consensus 6 l~~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~i 81 (362)
T TIGR03258 6 IRIDHLRVAYGA----NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL 81 (362)
T ss_pred EEEEEEEEEECC----eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCE
Confidence 446677777742 2467888999999999999999999999999999986 33333322211 000
Q ss_pred --------ccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138 114 --------YDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM 155 (212)
Q Consensus 114 --------~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~ 155 (212)
+.+... ....+++.+|..-+ -+.|+.+|..|+..+..+|+ ++
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL 161 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL 161 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 011100 12233444443321 13367788899999999998 66
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhcCC--CcEEEEEeccccccccccccCeEEEEE
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLSES--HKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~~~--~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++.+.+++..+..+.+.++++... ...+++.+|.+.++ ..+||+++++.
T Consensus 162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea--~~l~dri~vl~ 213 (362)
T TIGR03258 162 DEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDA--LTLADKAGIMK 213 (362)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 8899999999999999999877632 46778889999886 47899999885
No 75
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.36 E-value=2.5e-12 Score=100.79 Aligned_cols=136 Identities=17% Similarity=0.165 Sum_probs=94.5
Q ss_pred CCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccc-c---------------------------ccC
Q psy17138 70 PHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHR-A---------------------------YDV 116 (212)
Q Consensus 70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~-~---------------------------~~~ 116 (212)
+...+.+++++|+||||||||||+++++++ |...++....... . ..|
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc
Confidence 345777999999999999999999999987 4445554432110 0 011
Q ss_pred C-------chhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-C
Q psy17138 117 G-------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-E 179 (212)
Q Consensus 117 ~-------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~ 179 (212)
+ ....+......|..-+ -+.|+.+|..|++.+..+.. +++++-+.++|..+.++...+.+.- +
T Consensus 99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E 178 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE 178 (231)
T ss_pred ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence 1 0122333334443221 14678899999987776644 5678888899999999999887765 5
Q ss_pred CCcEEEEEeccccccccccccCeEEEEE
Q psy17138 180 SHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 180 ~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
...++++.+|-..++ ..+.|++++++
T Consensus 179 ~~~TllmVTH~~~Da--~~ia~~~~fl~ 204 (231)
T COG3840 179 RKMTLLMVTHHPEDA--ARIADRVVFLD 204 (231)
T ss_pred hCCEEEEEeCCHHHH--HHhhhceEEEe
Confidence 566778889988775 57889999886
No 76
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.36 E-value=1.6e-12 Score=101.67 Aligned_cols=135 Identities=12% Similarity=0.025 Sum_probs=93.5
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---ccccccCCchhHHHHHHHhCCccCCC
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHRAYDVGTRGNQVVRELFGEDIALP 135 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~~~~~~~~~~~~~~~~~g~~~~~~ 135 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++.. .+ ..+.+.+.....+.+....... -+
T Consensus 16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~--LS 93 (166)
T cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDV--LS 93 (166)
T ss_pred eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCC--CC
Confidence 56778899999999999999999999999999987 33333321 11 1111111112222221101111 25
Q ss_pred CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.|+.+|-.++..+..+|+ +++++.+.+++...+.+.+.+.+. ...+++.+|.+.. ..+||++++++
T Consensus 94 ~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~---~~~~d~i~~l~ 161 (166)
T cd03223 94 GGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSL---WKFHDRVLDLD 161 (166)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhH---HhhCCEEEEEc
Confidence 677788899999999998 568899999999999999888775 2567777888743 35899998874
No 77
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.36 E-value=4.6e-13 Score=112.72 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=80.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChH
Q psy17138 78 IIGLTGGIASGKSTIAKYLETL----GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~ 153 (212)
++||+|+|||||||+++.|+++ +..++.+|.+.+ ... .+ ....|...+... ..+ + ..++++..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~----~~~---~~-r~~~g~~~~~p~-~~~---~-d~l~~~l~ 67 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHS----LDR---KG-RKETGITALDPR-ANN---F-DLMYEQLK 67 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccccc----CCH---HH-HHHhhccccccc-chh---H-HHHHHHHH
Confidence 5899999999999999999975 566788875432 111 11 122333222111 111 1 24556666
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEecccc-ccccccccCeEEEEEeCCCC
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLL-SAKWQDQVHEIWVTFIPEQE 212 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~-e~~~~~~~d~v~~v~~~~~~ 212 (212)
.+...+.+.+|.+.+.......... .+.+++++|+++++ +.+++++||.+|+|++|+++
T Consensus 68 ~Lk~g~~i~~P~y~~~~~~~~~~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~ 128 (273)
T cd02026 68 ALKEGQAIEKPIYNHVTGLIDPPELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEV 128 (273)
T ss_pred HHHCCCCcccccccccCCCcCCcEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhH
Confidence 7777778899988776644221111 44689999999854 66889999999999999863
No 78
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.35 E-value=6.4e-13 Score=115.99 Aligned_cols=141 Identities=23% Similarity=0.190 Sum_probs=100.8
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------------c-cc-------cCCch
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------------R-AY-------DVGTR 119 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------------~-~~-------~~~~~ 119 (212)
.++++++...+|++++|+|+||||||||+++|+++ |...+++..+.. . .| .+...
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T 87 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT 87 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence 56778899999999999999999999999999987 434444432210 0 01 11101
Q ss_pred h---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138 120 G---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ 169 (212)
Q Consensus 120 ~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~ 169 (212)
. ...+++.+|.+.+ -+.|+.+|-.++..+..+|+ +++++...++|..++.
T Consensus 88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~ 167 (363)
T TIGR01186 88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDS 167 (363)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 1 1122333343221 13467788889999999998 5688899999999999
Q ss_pred HHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 170 VKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 170 ~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.+.++. .....+++.+|.+.++ ..+||+++++.
T Consensus 168 l~~~l~~l~~~~~~Tii~vTHd~~ea--~~~~drI~vl~ 204 (363)
T TIGR01186 168 MQDELKKLQATLQKTIVFITHDLDEA--IRIGDRIVIMK 204 (363)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence 999998775 4456788889999875 57899999885
No 79
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.35 E-value=1.9e-12 Score=104.63 Aligned_cols=129 Identities=19% Similarity=0.170 Sum_probs=70.5
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHh
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIV 148 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~v 148 (212)
..++.+|+|+|+||||||||++.|.+. ...+++.|...+..-.. .... . ....+.....++...+...+
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~---~~~~---~-~~~~~~~~~~~~~~~l~~~l 75 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHL---SFEE---R-VKTNYDHPDAFDHDLLIEHL 75 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccC---CHHH---h-cccCccCcccccHHHHHHHH
Confidence 467999999999999999999999864 23455666532211000 0000 0 00001111122332222111
Q ss_pred cCChHHHHHHHhhhhHHHHHHHHHHHHhh-c-CCCcEEEEEeccccc-cccccccCeEEEEEeCCCC
Q psy17138 149 FSNKDEMNKLNQAIWPLILAQVKEEIARL-S-ESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQE 212 (212)
Q Consensus 149 f~~~~~~~~~~~i~~p~~~~~~~~~i~~~-~-~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~~ 212 (212)
..+.....+..|.+.........+. . .+..++++|++++++ .++.++||.+|+|++|.++
T Consensus 76 ----~~l~~~~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~ 138 (209)
T PRK05480 76 ----KALKAGKAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDI 138 (209)
T ss_pred ----HHHHcCCccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhH
Confidence 1111112233444443332221111 1 345699999999997 6888999999999999863
No 80
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.35 E-value=1.1e-12 Score=106.62 Aligned_cols=141 Identities=16% Similarity=0.131 Sum_probs=96.3
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c-ccccC-------Cc
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H-RAYDV-------GT 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~-~~~~~-------~~ 118 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+ ..
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF 98 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence 356778899999999999999999999999999986 33333321110 0 00100 00
Q ss_pred h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 119 R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 119 ~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
. ....+++.+|.... -+.|+.+|-.++..+..+|+ +++++.+.+++....
T Consensus 99 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 178 (221)
T TIGR02211 99 TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178 (221)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHH
Confidence 0 01123334443211 12356678888888889988 668899999999999
Q ss_pred HHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+.+.. .....+++.+|.+.+. ..||+++++.
T Consensus 179 ~l~~~l~~~~~~~~~tii~~tH~~~~~---~~~d~v~~l~ 215 (221)
T TIGR02211 179 IIFDLMLELNRELNTSFLVVTHDLELA---KKLDRVLEMK 215 (221)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHH---hhcCEEEEEe
Confidence 9999998775 3356788889998764 3479999885
No 81
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=2e-12 Score=105.48 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=96.8
Q ss_pred ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------------cccccc-----CC
Q psy17138 62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------------GHRAYD-----VG 117 (212)
Q Consensus 62 ~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------------~~~~~~-----~~ 117 (212)
...+++++++...+|+.+||+|.||||||||+|+|++. |-..++++.. ++++.. .+
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 44677889999999999999999999999999999985 3333333321 111100 00
Q ss_pred ------chhHHHHHH------HhCCccC-CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCc
Q psy17138 118 ------TRGNQVVRE------LFGEDIA-LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHK 182 (212)
Q Consensus 118 ------~~~~~~~~~------~~g~~~~-~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~ 182 (212)
...++.+++ ....++. -+.|+.-|..++-.+..+|+ ++++.-+.-++.+.+.-.+++.+...+..
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~ 198 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNK 198 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCC
Confidence 011222222 1112221 13456667777767777887 45666677888888888888888754457
Q ss_pred EEEEEeccccccccccccCeEEEEEe
Q psy17138 183 VIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 183 ~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
++++-+|.+-. ++++||+++++..
T Consensus 199 tiv~VSHd~~~--I~~~Cd~~i~l~~ 222 (249)
T COG1134 199 TIVLVSHDLGA--IKQYCDRAIWLEH 222 (249)
T ss_pred EEEEEECCHHH--HHHhcCeeEEEeC
Confidence 88888999865 4689999999864
No 82
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=1.4e-12 Score=106.93 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=102.9
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR 112 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~ 112 (212)
+.+.+++|.........++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +.
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRR 83 (233)
T ss_pred EecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 444555553211011356778899999999999999999999999999987 43444322211 00
Q ss_pred -cccCC-------chh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--H
Q psy17138 113 -AYDVG-------TRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--E 154 (212)
Q Consensus 113 -~~~~~-------~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~ 154 (212)
.|.+. ... ....++.+|..-. -+.|+.+|-.++..+..+|+ +
T Consensus 84 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 163 (233)
T cd03258 84 IGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLL 163 (233)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 01111 011 1122333333211 12356678888888888888 6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 155 MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 155 ~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.+.+++.....+.+.+.+.. .....+++.+|.+.+. ..+||+++++.
T Consensus 164 LDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~--~~~~d~i~~l~ 215 (233)
T cd03258 164 CDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVV--KRICDRVAVME 215 (233)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 688999999999999999998775 3356788889988653 56899998874
No 83
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=3e-13 Score=106.80 Aligned_cols=139 Identities=20% Similarity=0.169 Sum_probs=95.5
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-----------ccccCCch-hHH--HHH
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-----------RAYDVGTR-GNQ--VVR 125 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-----------~~~~~~~~-~~~--~~~ 125 (212)
.++++++...+|.+++|+|+||||||||+++|.++ |...++...+.. -.|.+... .+. .+.
T Consensus 15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 94 (178)
T cd03229 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVL 94 (178)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHH
Confidence 56778889999999999999999999999999986 333333322211 01111110 000 000
Q ss_pred HHhCCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCC-CcEEEEEeccccccccccccCe
Q psy17138 126 ELFGEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSES-HKVIVIEAAVLLSAKWQDQVHE 202 (212)
Q Consensus 126 ~~~g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~-~~~vvie~~~l~e~~~~~~~d~ 202 (212)
+..... -+.|+.+|-.++..+.++|+ +++++.+.+++.....+.+.+.+.... ...+++.+|.+.+. .++||+
T Consensus 95 ~~l~~~--lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~--~~~~d~ 170 (178)
T cd03229 95 ENIALG--LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA--ARLADR 170 (178)
T ss_pred Hheeec--CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhcCE
Confidence 000000 24567788889999999998 568899999999999999999877633 56788889988664 468999
Q ss_pred EEEEE
Q psy17138 203 IWVTF 207 (212)
Q Consensus 203 v~~v~ 207 (212)
+++++
T Consensus 171 i~~l~ 175 (178)
T cd03229 171 VVVLR 175 (178)
T ss_pred EEEEe
Confidence 99875
No 84
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=9.6e-13 Score=109.71 Aligned_cols=153 Identities=12% Similarity=0.084 Sum_probs=102.7
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------ccc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------HRA 113 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~~~ 113 (212)
+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. ...
T Consensus 4 ~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 4 ISHLYADYGG----KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred EEEEEEEeCC----eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 3444555531 1356778899999999999999999999999999987 33333321110 000
Q ss_pred -ccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138 114 -YDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAI 162 (212)
Q Consensus 114 -~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~ 162 (212)
+.+... ....+++.+|.... -+.|+.+|..++..+..+|+ +++++.+.+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~L 159 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 000000 11233344443211 12366778888889999988 568899999
Q ss_pred hHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 163 WPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 163 ~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.....+.+.+.++. .....+++.+|.+.+. ..+||+++++.
T Consensus 160 D~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~--~~~~d~i~~l~ 203 (255)
T PRK11248 160 DAFTREQMQTLLLKLWQETGKQVLLITHDIEEA--VFMATELVLLS 203 (255)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence 9999999999998763 3356777779998764 57899999986
No 85
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.35 E-value=5e-13 Score=116.37 Aligned_cols=153 Identities=13% Similarity=0.107 Sum_probs=106.4
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------cc-c--
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------RA-Y-- 114 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------~~-~-- 114 (212)
+++.+++|.. ...++++++...+|++++|+||||||||||+++|+++ |...++...+.. .+ |
T Consensus 5 i~~l~~~~~~----~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 5 IANIKKSFGR----TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEeCC----eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 5566666632 2367778899999999999999999999999999987 433444322210 00 0
Q ss_pred -----cCCch-------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138 115 -----DVGTR-------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM 155 (212)
Q Consensus 115 -----~~~~~-------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~ 155 (212)
.+... ...++++.+|..-+ -+.|+.+|..|+..+..+|+ ++
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLL 160 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL 160 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11000 11223444443211 13467788899999999998 56
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++.+.+++..+..+.+.+.++. .....+++.+|.+.++ ..+||++++++
T Consensus 161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea--~~~~Dri~vl~ 211 (353)
T PRK10851 161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEA--MEVADRVVVMS 211 (353)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 88899999999999999998876 3356778889999875 47899999886
No 86
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.34 E-value=8.4e-13 Score=106.89 Aligned_cols=141 Identities=16% Similarity=0.106 Sum_probs=97.0
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc----------ccccc---------------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL----------GHRAY--------------- 114 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i----------~~~~~--------------- 114 (212)
.++++++...+|++++|+|+||||||||+++|+++ |...++...+ ..+..
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~ 93 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLM 93 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHh
Confidence 56778899999999999999999999999999986 3223332110 00000
Q ss_pred --cC--------Cc---hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHH
Q psy17138 115 --DV--------GT---RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKE 172 (212)
Q Consensus 115 --~~--------~~---~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~ 172 (212)
.. .. .....+++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.++|.....+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 173 (213)
T cd03235 94 GLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE 173 (213)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00 00 011223344443211 13356778888888888888 5688999999999999999
Q ss_pred HHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 173 EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 173 ~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.......+++.+|.+.+. .++||+++++.
T Consensus 174 ~l~~~~~~~~tvi~~sH~~~~~--~~~~d~i~~l~ 206 (213)
T cd03235 174 LLRELRREGMTILVVTHDLGLV--LEYFDRVLLLN 206 (213)
T ss_pred HHHHHHhcCCEEEEEeCCHHHH--HHhcCEEEEEc
Confidence 9987753456778889998764 46899999875
No 87
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=1e-12 Score=108.26 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=103.0
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------c-ccccC
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------H-RAYDV 116 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~-~~~~~ 116 (212)
+++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+
T Consensus 5 ~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 5 VRNVSKRFGD----FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEeEEEEECC----EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 4455555531 1357778899999999999999999999999999987 32333321110 0 00100
Q ss_pred -------Cch-------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138 117 -------GTR-------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM 155 (212)
Q Consensus 117 -------~~~-------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~ 155 (212)
... ....+++.+|..-. -+.|+.+|..++..+..+|+ ++
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 160 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL 160 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 000 01222344443211 13467778889988888888 66
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++.+.+++...+.+.+.+.+.. .....+++.+|.+.+. ..+||++++++
T Consensus 161 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~--~~~~d~i~~l~ 211 (239)
T cd03296 161 DEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEA--LEVADRVVVMN 211 (239)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 89999999999999999998775 3356788889998653 46899999885
No 88
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.34 E-value=1.3e-12 Score=105.66 Aligned_cols=142 Identities=18% Similarity=0.135 Sum_probs=97.2
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-------ccccCC-------ch-----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-------RAYDVG-------TR----- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-------~~~~~~-------~~----- 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+.. -.|.+. ..
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 93 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI 93 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHH
Confidence 356788899999999999999999999999999986 323333211100 001110 00
Q ss_pred ----------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138 120 ----------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI 174 (212)
Q Consensus 120 ----------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i 174 (212)
....+.+.+|.... -+.|+.+|-.++..+..+|+ +++++.+.++|...+.+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 173 (213)
T cd03301 94 AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL 173 (213)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 01122334443211 13456677788888889888 668899999999999999999
Q ss_pred Hhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 175 ARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 175 ~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.. .....+++.+|.+.+. ..+||+++++.
T Consensus 174 ~~~~~~~~~tvi~~sH~~~~~--~~~~d~i~~l~ 205 (213)
T cd03301 174 KRLQQRLGTTTIYVTHDQVEA--MTMADRIAVMN 205 (213)
T ss_pred HHHHHHcCCEEEEEeCCHHHH--HHhcCeEEEEE
Confidence 8775 3356777889988654 46899998874
No 89
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.34 E-value=1.8e-12 Score=109.53 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=109.3
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----ee------eeCCcc--------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----GL------INCDQL-------- 109 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----~v------i~~D~i-------- 109 (212)
.|++.+..|.......++++++++...+|+++||+|.|||||||+++.+.++-. .+ +++..+
T Consensus 3 ~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~ 82 (316)
T COG0444 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKEL 82 (316)
T ss_pred eEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHH
Confidence 366777788766557799999999999999999999999999999999998632 12 222211
Q ss_pred ----cccc-c---------cCCchh-----------------------HHHHHHHhCCcc----------CCCCCccchH
Q psy17138 110 ----GHRA-Y---------DVGTRG-----------------------NQVVRELFGEDI----------ALPDGSIDRK 142 (212)
Q Consensus 110 ----~~~~-~---------~~~~~~-----------------------~~~~~~~~g~~~----------~~~~~~~~r~ 142 (212)
++++ + .|-... ..++.+..|.+- .-+.|+.+|.
T Consensus 83 ~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV 162 (316)
T COG0444 83 RKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRV 162 (316)
T ss_pred HhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHH
Confidence 0000 0 000000 001112222221 1146888999
Q ss_pred hHHHHhcCChHHH--HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 143 KLGAIVFSNKDEM--NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 143 ~l~~~vf~~~~~~--~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
.++..+..+|+++ ++++..++..+...+.+.+++++ .....+++=+|.|--. ..+||++.++++
T Consensus 163 ~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vv--a~~aDri~VMYa 229 (316)
T COG0444 163 MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVV--AEIADRVAVMYA 229 (316)
T ss_pred HHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhcceEEEEEC
Confidence 9998888999854 78899999999999999998887 3344444448988643 479999999875
No 90
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.34 E-value=7.8e-13 Score=110.45 Aligned_cols=155 Identities=17% Similarity=0.120 Sum_probs=104.7
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc----------cc
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL----------GH 111 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i----------~~ 111 (212)
..+.+..++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+ ..
T Consensus 13 l~i~~l~~~~~~----~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 13 LLLNAVSKRYGE----RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred EEEEEEEEEECC----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 446666666631 1356788999999999999999999999999999986 3223322111 00
Q ss_pred cc-ccCC---------------chhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138 112 RA-YDVG---------------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI 166 (212)
Q Consensus 112 ~~-~~~~---------------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~ 166 (212)
+. +.+. ......+++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.+++..
T Consensus 89 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~ 168 (257)
T PRK11247 89 DARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168 (257)
T ss_pred CccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 00 0000 0112233444543211 13356778888888989988 5688999999999
Q ss_pred HHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 167 LAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 167 ~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
...+.+.+.++. .....+++.+|.+.+. ..+||+++++.
T Consensus 169 ~~~l~~~L~~~~~~~~~tviivsHd~~~~--~~~~d~i~~l~ 208 (257)
T PRK11247 169 RIEMQDLIESLWQQHGFTVLLVTHDVSEA--VAMADRVLLIE 208 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 999999888764 3356778889998763 46899998875
No 91
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.34 E-value=6e-13 Score=116.56 Aligned_cols=154 Identities=15% Similarity=0.112 Sum_probs=105.5
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------ 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------ 110 (212)
.+++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+.
T Consensus 5 ~i~~l~~~~~~----~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v 80 (369)
T PRK11000 5 TLRNVTKAYGD----VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMV 80 (369)
T ss_pred EEEEEEEEeCC----eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEE
Confidence 35555666631 1356788899999999999999999999999999987 33333322110
Q ss_pred -ccc-ccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138 111 -HRA-YDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL 158 (212)
Q Consensus 111 -~~~-~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~ 158 (212)
.+. +.+... ....+++.+|..-+ -+.|+.+|-.|+..+..+|+ +++++
T Consensus 81 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEP 160 (369)
T PRK11000 81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (369)
T ss_pred eCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 000 001100 11223344454321 13467788899999999998 56889
Q ss_pred HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+++..+..+.+.++++. .....+++.+|.+.++ ..+||+++++.
T Consensus 161 ts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~--~~~~d~i~vl~ 208 (369)
T PRK11000 161 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA--MTLADKIVVLD 208 (369)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 99999999999999888775 3355777779998764 47899999885
No 92
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.34 E-value=1.9e-12 Score=106.38 Aligned_cols=141 Identities=14% Similarity=0.128 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-ccccCCc-------h---
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RAYDVGT-------R--- 119 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~~~~~~-------~--- 119 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+.. .
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~ 94 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLE 94 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHH
Confidence 56778899999999999999999999999999986 33333321110 0 0010000 0
Q ss_pred ----------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138 120 ----------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAI 162 (212)
Q Consensus 120 ----------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~ 162 (212)
.....++.+|.... -+.|+.+|..++..+..+|+ +++++.+.+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 174 (236)
T cd03219 95 NVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL 174 (236)
T ss_pred HHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 01222333443211 12356677888888888888 568899999
Q ss_pred hHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 163 WPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 163 ~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.....+.+.+.++......+++.+|.+.+. ..+||+++++.
T Consensus 175 D~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~--~~~~d~i~~l~ 217 (236)
T cd03219 175 NPEETEELAELIRELRERGITVLLVEHDMDVV--MSLADRVTVLD 217 (236)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH--HHhCCEEEEEe
Confidence 99999999999987753456778889998764 46899999875
No 93
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.34 E-value=2.6e-12 Score=106.67 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=92.6
Q ss_pred CCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---cccc-cCCch-----------------hHHH
Q psy17138 70 PHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---HRAY-DVGTR-----------------GNQV 123 (212)
Q Consensus 70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---~~~~-~~~~~-----------------~~~~ 123 (212)
+....+|++++|+|+||||||||+++|+++ |...++...++ .... ..... ....
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 98 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE 98 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHH
Confidence 345678999999999999999999999986 43333332121 1100 00000 0122
Q ss_pred HHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccc
Q psy17138 124 VRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLS 193 (212)
Q Consensus 124 ~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e 193 (212)
+++.+|.... -+.|+.+|..++..+..+|+ +++++.+.+++..+..+.+.+++.. .....+++.+|.+.+
T Consensus 99 ~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~ 178 (246)
T cd03237 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM 178 (246)
T ss_pred HHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 3333433211 13467788889999999998 6689999999999999999888775 335678888999876
Q ss_pred cccccccCeEEEEE
Q psy17138 194 AKWQDQVHEIWVTF 207 (212)
Q Consensus 194 ~~~~~~~d~v~~v~ 207 (212)
. ..+||++|++.
T Consensus 179 ~--~~~~d~i~~l~ 190 (246)
T cd03237 179 I--DYLADRLIVFE 190 (246)
T ss_pred H--HHhCCEEEEEc
Confidence 4 46899999874
No 94
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=7.7e-13 Score=114.09 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=107.1
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC---------eeeeCCcccc--------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA---------GLINCDQLGH-------- 111 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~---------~vi~~D~i~~-------- 111 (212)
+++.++.|...+....+++++++...+|+++||+|+||||||||+++|.++-. ..++...+..
T Consensus 6 v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~ 85 (326)
T PRK11022 6 VDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRN 85 (326)
T ss_pred EeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHH
Confidence 55555666432222457889999999999999999999999999999998632 1333322110
Q ss_pred ----c-cccCCc---------h----------------------hHHHHHHHhCCcc----C------CCCCccchHhHH
Q psy17138 112 ----R-AYDVGT---------R----------------------GNQVVRELFGEDI----A------LPDGSIDRKKLG 145 (212)
Q Consensus 112 ----~-~~~~~~---------~----------------------~~~~~~~~~g~~~----~------~~~~~~~r~~l~ 145 (212)
. .|.++. . ....+++.+|..- + -+.|+.+|..++
T Consensus 86 ~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iA 165 (326)
T PRK11022 86 LVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIA 165 (326)
T ss_pred HhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHH
Confidence 0 011100 0 0112233344321 0 134677888999
Q ss_pred HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
..+..+|+ +++++...+++.....+.+.+.++. .....+++-+|.+..+ ..+||++++++.
T Consensus 166 rAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~--~~~adri~vm~~ 229 (326)
T PRK11022 166 MAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALV--AEAAHKIIVMYA 229 (326)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEEC
Confidence 99999998 5588999999999999999998876 3355677779998764 468999998863
No 95
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=1.3e-12 Score=110.82 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=100.6
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------cc-cccCC--------ch
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------HR-AYDVG--------TR 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~~-~~~~~--------~~ 119 (212)
..++++++...+|+++||+|+||||||||+++|+++ |...++...+. +. .|.+. ..
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 100 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET 100 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence 467888999999999999999999999999999987 43334332111 00 01110 00
Q ss_pred ---------------------hHHHHHHHhCCc---cCC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHH
Q psy17138 120 ---------------------GNQVVRELFGED---IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLIL 167 (212)
Q Consensus 120 ---------------------~~~~~~~~~g~~---~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~ 167 (212)
.....++.+|.. ..+ +.|+.+|..|+..+..+|+ +++++.+.++|...
T Consensus 101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~ 180 (287)
T PRK13637 101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR 180 (287)
T ss_pred HHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHH
Confidence 112334555553 111 2356778889999999998 56889999999999
Q ss_pred HHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 168 AQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 168 ~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+.+.+.++. .....+++.+|.+.+. ..+||+++++.
T Consensus 181 ~~l~~~l~~l~~~~g~tvi~vtHd~~~~--~~~~drv~~l~ 219 (287)
T PRK13637 181 DEILNKIKELHKEYNMTIILVSHSMEDV--AKLADRIIVMN 219 (287)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 99999998875 3356788889998764 46899999875
No 96
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=1.5e-12 Score=109.39 Aligned_cols=153 Identities=17% Similarity=0.121 Sum_probs=102.9
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------c-c
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------H-R 112 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~-~ 112 (212)
+++.+++|. + ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -
T Consensus 4 ~~~l~~~~~--~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 4 TSDLWFRYQ--D--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred EEEEEEEcC--C--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 455555553 1 2467888999999999999999999999999999986 43334322210 0 0
Q ss_pred cccCCc--------hh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--H
Q psy17138 113 AYDVGT--------RG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--E 154 (212)
Q Consensus 113 ~~~~~~--------~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~ 154 (212)
.|.+.. .. .....+.+|...+ -+.|+.+|..++..+..+|+ +
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lll 159 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLL 159 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 011110 00 0112233332211 13466778889988999988 5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 155 MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 155 ~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.+.+++.....+.+.+.+.......+++.+|.+.+. ..+||+++++.
T Consensus 160 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~--~~~~d~i~~l~ 210 (271)
T PRK13638 160 LDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI--YEISDAVYVLR 210 (271)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 6889999999999999999887753345777779998764 46899998875
No 97
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.33 E-value=2.2e-12 Score=104.33 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=97.2
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------c-ccccCC-------ch--
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------H-RAYDVG-------TR-- 119 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~-~~~~~~-------~~-- 119 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+. ..
T Consensus 15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 94 (213)
T cd03262 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVL 94 (213)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHH
Confidence 56778899999999999999999999999999986 33333321110 0 001110 00
Q ss_pred --------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHH
Q psy17138 120 --------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQV 170 (212)
Q Consensus 120 --------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~ 170 (212)
.....++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.+++...+.+
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l 174 (213)
T cd03262 95 ENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEV 174 (213)
T ss_pred HHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 01122333443211 12356678888888999998 56889999999999999
Q ss_pred HHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 171 KEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 171 ~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+++.......+++.+|.+.+. .++||+++++.
T Consensus 175 ~~~l~~~~~~~~tvi~~sh~~~~~--~~~~d~i~~l~ 209 (213)
T cd03262 175 LDVMKDLAEEGMTMVVVTHEMGFA--REVADRVIFMD 209 (213)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence 999988753345777779988764 47899999886
No 98
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.33 E-value=5.7e-13 Score=108.50 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=105.4
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----ccccc---
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----HRAYD--- 115 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----~~~~~--- 115 (212)
.+++.+++|+ -+.++++++++.++|+++||+|||||||||+.+++.++ |...+++..+. |+...
T Consensus 6 ~v~~l~k~FG----Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 6 EVRGLSKRFG----GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeccceeecC----CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 4678888897 34899999999999999999999999999999999975 55555555441 11000
Q ss_pred ----------CCchh---------------------------------HHHHHHHhCCccCC-------CCCccchHhHH
Q psy17138 116 ----------VGTRG---------------------------------NQVVRELFGEDIAL-------PDGSIDRKKLG 145 (212)
Q Consensus 116 ----------~~~~~---------------------------------~~~~~~~~g~~~~~-------~~~~~~r~~l~ 145 (212)
++-.. -..+++..|..-.. +.|...+-.++
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence 00000 01122223322111 12444566788
Q ss_pred HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcC-CCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSE-SHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~-~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
..+..+|. +++++-+.+.|.-.+++.+.|++.+. ....+++-.|.|.- ..++||++++++-
T Consensus 162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~--Vm~l~dri~Vl~~ 225 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL--VMGLADRIVVLNY 225 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH--HhhhccEEEeccC
Confidence 89999998 56888889999999999999999873 33444444666643 2469999999864
No 99
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=1.3e-12 Score=104.35 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=95.4
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC-------CeeeeCCcc----cc-ccccCC-------chhHHHHH
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG-------AGLINCDQL----GH-RAYDVG-------TRGNQVVR 125 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg-------~~vi~~D~i----~~-~~~~~~-------~~~~~~~~ 125 (212)
.++++++...+|.+++|+|+||||||||+++|+++. ...++...+ .+ -.|.+. ....+.+.
T Consensus 22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 101 (192)
T cd03232 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALR 101 (192)
T ss_pred eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHH
Confidence 567788899999999999999999999999999752 122332121 01 111111 11222221
Q ss_pred H--HhCCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccC
Q psy17138 126 E--LFGEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVH 201 (212)
Q Consensus 126 ~--~~g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d 201 (212)
. ... . -+.|+.+|-.++..+..+|+ +++++.+.+++.....+.+.+++.......+++.+|.+.+ .+.++||
T Consensus 102 ~~~~~~-~--LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~-~~~~~~d 177 (192)
T cd03232 102 FSALLR-G--LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA-SIFEKFD 177 (192)
T ss_pred HHHHHh-c--CCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChH-HHHhhCC
Confidence 1 011 2 25677888899999999998 5688899999999999999998775335677888998752 1246899
Q ss_pred eEEEEE
Q psy17138 202 EIWVTF 207 (212)
Q Consensus 202 ~v~~v~ 207 (212)
+++++.
T Consensus 178 ~i~~l~ 183 (192)
T cd03232 178 RLLLLK 183 (192)
T ss_pred EEEEEc
Confidence 998875
No 100
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.33 E-value=2.5e-12 Score=116.50 Aligned_cols=154 Identities=19% Similarity=0.169 Sum_probs=106.6
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-cc
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RA 113 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~ 113 (212)
.+++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.
T Consensus 5 ~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 5 QISQGTFRLSD----TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEeEEEEcCC----eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 35566666642 1367889999999999999999999999999999986 33333221110 0 00
Q ss_pred ccC---------------Cc-------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138 114 YDV---------------GT-------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN 156 (212)
Q Consensus 114 ~~~---------------~~-------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~ 156 (212)
|.+ .. .....++..+|.... -+.|+.+|..++..+..+|+ +++
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 160 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILD 160 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 000 00 011233444554211 13467788899999999998 668
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.+.++|.....+.+.+.++......+++-+|.+.+. .++||+++++.
T Consensus 161 EPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~--~~~~d~v~~l~ 209 (490)
T PRK10938 161 EPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEI--PDFVQFAGVLA 209 (490)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH--HhhCCEEEEEE
Confidence 99999999999999999988763356777779998664 57899999885
No 101
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4e-12 Score=113.32 Aligned_cols=156 Identities=18% Similarity=0.180 Sum_probs=105.6
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC------Cc--cccc
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC------DQ--LGHR 112 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~------D~--i~~~ 112 (212)
...+.+++++|. +...+++++.++...+|+.|+|+|+|||||||++..|.+. |-..+++ +. +.+.
T Consensus 336 ~l~~~~vsF~y~--~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~ 413 (573)
T COG4987 336 ALELRNVSFTYP--GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRET 413 (573)
T ss_pred eeeeccceeecC--CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHH
Confidence 445667777665 4466788999999999999999999999999999999963 2222222 21 1111
Q ss_pred c-----------------c---cCC--chh---------HHHHHHHh--------CCccC-CCCCccchHhHHHHhcCCh
Q psy17138 113 A-----------------Y---DVG--TRG---------NQVVRELF--------GEDIA-LPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 113 ~-----------------~---~~~--~~~---------~~~~~~~~--------g~~~~-~~~~~~~r~~l~~~vf~~~ 152 (212)
+ + .++ .+. .+..++.. |+... -+.|+.+|-.|++++.+|.
T Consensus 414 i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~da 493 (573)
T COG4987 414 ISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA 493 (573)
T ss_pred HhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCC
Confidence 0 0 000 000 11111111 11110 1456778889999999987
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
. ++++++..++|...+.+.+.+.+.. .++.+++-+|-+... +.||++++++
T Consensus 494 pl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~l---e~~drIivl~ 546 (573)
T COG4987 494 PLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGL---ERMDRIIVLD 546 (573)
T ss_pred CeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccccH---hhcCEEEEEE
Confidence 7 6789999999999999998887664 456777779988764 5899999986
No 102
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.33 E-value=2.5e-13 Score=107.77 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=114.3
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccccc---------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRA--------- 113 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~--------- 113 (212)
.+.+..++|... +.++++++...+|+++||.||||+||||..-++.++ |-..++..++.+..
T Consensus 6 ~a~~l~K~y~kr----~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 6 VAENLAKSYKKR----KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EehhhhHhhCCe----eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 345566666532 677889999999999999999999999999999886 55666665553221
Q ss_pred -ccCCch------------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138 114 -YDVGTR------------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 114 -~~~~~~------------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-- 153 (212)
|.|+.. ..+.+++.|...-+ -+.|...|..++..+..+|.
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi 161 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFI 161 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEE
Confidence 333211 12234444443221 14567778899999999998
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
+++++-+.++|....+++..|..++...-=|++.-|..-|+ .++|||..++..
T Consensus 162 LLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREt--L~i~dRaYIi~~ 214 (243)
T COG1137 162 LLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRET--LDICDRAYIISD 214 (243)
T ss_pred EecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHH--HhhhheEEEEec
Confidence 67888889999999999999999985556778888999886 689999988864
No 103
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.33 E-value=1.4e-12 Score=106.12 Aligned_cols=142 Identities=18% Similarity=0.180 Sum_probs=96.5
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-ccccCCc-------hh-
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RAYDVGT-------RG- 120 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~~~~~~-------~~- 120 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+.. ..
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE 93 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence 356778899999999999999999999999999986 33333321110 0 0111110 00
Q ss_pred ------------------HHHHHHHh-CCc-cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHH
Q psy17138 121 ------------------NQVVRELF-GED-IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKE 172 (212)
Q Consensus 121 ------------------~~~~~~~~-g~~-~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~ 172 (212)
...+.+.+ +.. .. -+.|+.+|-.++..+..+|+ +++++.+.+++.....+.+
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 173 (222)
T cd03224 94 ENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 173 (222)
T ss_pred HHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHH
Confidence 11222223 111 00 13456677888888888887 5688899999999999999
Q ss_pred HHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 173 EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 173 ~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.......+++.+|.+.+. ..+||+++++.
T Consensus 174 ~l~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~ 206 (222)
T cd03224 174 AIRELRDEGVTILLVEQNARFA--LEIADRAYVLE 206 (222)
T ss_pred HHHHHHHCCCEEEEEeCCHHHH--HHhccEEEEee
Confidence 9987753456788889998653 47899999875
No 104
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.6e-12 Score=112.31 Aligned_cols=157 Identities=18% Similarity=0.155 Sum_probs=105.5
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC---------CeeeeCCccc---------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG---------AGLINCDQLG--------- 110 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg---------~~vi~~D~i~--------- 110 (212)
+.+.++.|...+.....++++++...+|+++||+|+||||||||+++|.++. ...++...+.
T Consensus 6 v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 85 (330)
T PRK15093 6 IRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred EeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHH
Confidence 4555555533222345788899999999999999999999999999999873 1223321110
Q ss_pred ---ccc-ccCCc---------h---------------------------hHHHHHHHhCCcc----C------CCCCccc
Q psy17138 111 ---HRA-YDVGT---------R---------------------------GNQVVRELFGEDI----A------LPDGSID 140 (212)
Q Consensus 111 ---~~~-~~~~~---------~---------------------------~~~~~~~~~g~~~----~------~~~~~~~ 140 (212)
+.+ |.++. . ....+++.+|..- + -+.|+.+
T Consensus 86 ~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~Q 165 (330)
T PRK15093 86 LVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQ 165 (330)
T ss_pred HhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 001 11110 0 0112233334321 0 1346778
Q ss_pred hHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcC-CCcEEEEEeccccccccccccCeEEEEE
Q psy17138 141 RKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSE-SHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 141 r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~-~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
|..++..+..+|+ +++++.+.+++.....+.+.++++.. ....+++-+|.+... ..+||++++++
T Consensus 166 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v--~~~~dri~vm~ 233 (330)
T PRK15093 166 KVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQML--SQWADKINVLY 233 (330)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence 8889999999998 55888999999999999999988763 355777779998765 47899999885
No 105
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=2e-12 Score=106.72 Aligned_cols=141 Identities=23% Similarity=0.210 Sum_probs=98.4
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc---------ccccCC-------ch----
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH---------RAYDVG-------TR---- 119 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~---------~~~~~~-------~~---- 119 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+.. -.|.+. ..
T Consensus 16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 95 (242)
T cd03295 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEEN 95 (242)
T ss_pred EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHH
Confidence 56778899999999999999999999999999986 433443322110 001111 00
Q ss_pred -----------------hHHHHHHHhCCcc---CC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHH
Q psy17138 120 -----------------GNQVVRELFGEDI---AL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVK 171 (212)
Q Consensus 120 -----------------~~~~~~~~~g~~~---~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~ 171 (212)
....+++.+|... .+ +.|+.+|..++..+..+|+ +++++.+.+++.....+.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 175 (242)
T cd03295 96 IALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQ 175 (242)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 1123344455431 11 2356678888888889988 568899999999999999
Q ss_pred HHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 172 EEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 172 ~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.+.. .....+++.+|.+.+. ..+||+++++.
T Consensus 176 ~~L~~~~~~~g~tvii~sH~~~~~--~~~~d~i~~l~ 210 (242)
T cd03295 176 EEFKRLQQELGKTIVFVTHDIDEA--FRLADRIAIMK 210 (242)
T ss_pred HHHHHHHHHcCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 9988775 3356788889988653 47899998875
No 106
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.32 E-value=1.7e-12 Score=106.14 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=102.4
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------ 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------ 110 (212)
.+.+.+++|.........++++++...+|.+++|+|+||||||||+++|+++ |...++...+.
T Consensus 8 ~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 87 (228)
T PRK10584 8 EVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRA 87 (228)
T ss_pred EEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHh
Confidence 3555555553211112356778899999999999999999999999999987 33333321110
Q ss_pred c-cccc-------CCchh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH-
Q psy17138 111 H-RAYD-------VGTRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 111 ~-~~~~-------~~~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~- 153 (212)
. -.|. +.... ....++.+|..-. -+.|+.+|..++..+..+|+
T Consensus 88 ~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~l 167 (228)
T PRK10584 88 KHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDV 167 (228)
T ss_pred heEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 0 0010 10000 1122333343211 12366778888888999988
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++...+.+.+.+.+.. .....+++.+|.+.+. ..||+++++.
T Consensus 168 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~---~~~d~i~~l~ 220 (228)
T PRK10584 168 LFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLA---ARCDRRLRLV 220 (228)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH---HhCCEEEEEE
Confidence 5688999999999999999998775 3356777779998764 3599998874
No 107
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=1.8e-12 Score=104.67 Aligned_cols=141 Identities=15% Similarity=0.186 Sum_probs=96.6
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----c-ccccC-------Cch--------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----H-RAYDV-------GTR-------- 119 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----~-~~~~~-------~~~-------- 119 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+ ...
T Consensus 15 ~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 94 (210)
T cd03269 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYL 94 (210)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHH
Confidence 56778889999999999999999999999999986 32233322110 0 00100 000
Q ss_pred -------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhh
Q psy17138 120 -------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARL 177 (212)
Q Consensus 120 -------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~ 177 (212)
...+.++.+|.... -+.|+.+|-.++..+..+|+ +++++.+.+++...+.+.+.+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~ 174 (210)
T cd03269 95 AQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL 174 (210)
T ss_pred HHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 11223334443211 13356677788888888888 568899999999999999998876
Q ss_pred cCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 178 SESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 178 ~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
......+++.+|.+.+. ..+||+++++.
T Consensus 175 ~~~~~tii~~sH~~~~~--~~~~d~i~~l~ 202 (210)
T cd03269 175 ARAGKTVILSTHQMELV--EELCDRVLLLN 202 (210)
T ss_pred HHCCCEEEEECCCHHHH--HHhhhEEEEEe
Confidence 53356788889998763 46899998875
No 108
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.32 E-value=7.4e-13 Score=116.13 Aligned_cols=155 Identities=14% Similarity=0.094 Sum_probs=106.9
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH---------- 111 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~---------- 111 (212)
..+++.+++|.. ...++++++...+|++++|+||||||||||+++|+++ |...++...+..
T Consensus 15 L~l~~l~~~~~~----~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 15 VELRGISKSFDG----KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred EEEEEEEEEECC----eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 346666666642 1356778899999999999999999999999999987 333444332210
Q ss_pred ---c-cccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHH
Q psy17138 112 ---R-AYDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNK 157 (212)
Q Consensus 112 ---~-~~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~ 157 (212)
+ .+.+... ....+++.+|..-+ -+.|+.+|..|+..+..+|+ ++++
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDE 170 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE 170 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 0111100 11223344443321 13467788899999999998 5688
Q ss_pred HHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 158 LNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 158 ~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+...+++..+..+.+.++++. .....+++.+|.+.++ ..+||+++++.
T Consensus 171 P~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea--~~laDri~vl~ 219 (375)
T PRK09452 171 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEA--LTMSDRIVVMR 219 (375)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 888999999999999998775 3356777779999875 57899999875
No 109
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.32 E-value=3.4e-12 Score=103.63 Aligned_cols=156 Identities=13% Similarity=0.039 Sum_probs=104.8
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----c-ccccC
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----H-RAYDV 116 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----~-~~~~~ 116 (212)
.+++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+
T Consensus 13 ~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 13 AAHALAFSRNE----EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred EEeeEEEecCC----ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence 35566665532 1356788899999999999999999999999999986 33333322111 0 00110
Q ss_pred C-------ch------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138 117 G-------TR------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAI 162 (212)
Q Consensus 117 ~-------~~------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~ 162 (212)
. .. ...+....+|..-. -+.|+.+|..++..+..+|+ +++++.+.+
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 168 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 0 00 11223333442211 12356677788888888988 568889999
Q ss_pred hHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeC
Q psy17138 163 WPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIP 209 (212)
Q Consensus 163 ~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~ 209 (212)
++...+.+.+.+.+.......+++-+|.+.+. .++||++|.+.+.
T Consensus 169 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~--~~~~~~i~~l~~~ 213 (214)
T PRK13543 169 DLEGITLVNRMISAHLRGGGAALVTTHGAYAA--PPVRTRMLTLEAA 213 (214)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecChhhh--hhhcceEEEEeec
Confidence 99999999999877653345777789998764 5799999998864
No 110
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.32 E-value=2.1e-12 Score=104.16 Aligned_cols=142 Identities=16% Similarity=0.157 Sum_probs=97.6
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------c-ccccCC-------ch-----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------H-RAYDVG-------TR----- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~-~~~~~~-------~~----- 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+. ..
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 93 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENL 93 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHH
Confidence 366778899999999999999999999999999986 33333332211 0 001111 00
Q ss_pred ------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc
Q psy17138 120 ------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS 178 (212)
Q Consensus 120 ------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~ 178 (212)
.....++.+|.... -+.|+.+|-.++..+..+|+ +++++.+.+++.....+.+.+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 173 (208)
T cd03268 94 RLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR 173 (208)
T ss_pred HHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence 11222334443211 13466677788888888888 6688999999999999999888765
Q ss_pred CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 179 ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 179 ~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.....+++.+|.+.+. ..+||+++++.
T Consensus 174 ~~~~tii~~tH~~~~~--~~~~d~v~~l~ 200 (208)
T cd03268 174 DQGITVLISSHLLSEI--QKVADRIGIIN 200 (208)
T ss_pred HCCCEEEEEcCCHHHH--HHhcCEEEEEE
Confidence 3346777779998764 46899999875
No 111
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.32 E-value=2.7e-12 Score=104.79 Aligned_cols=157 Identities=16% Similarity=0.144 Sum_probs=102.5
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL-------------- 109 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i-------------- 109 (212)
+++.+++|.........++++++...+|++++|+|+||||||||+++|+++ |...++...+
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKE 83 (228)
T ss_pred EEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhcc
Confidence 444555553211012356788999999999999999999999999999986 3223322111
Q ss_pred ----cccc---ccCCc-------------------hhH----HHHHHHhCCc--cCC------CCCccchHhHHHHhcCC
Q psy17138 110 ----GHRA---YDVGT-------------------RGN----QVVRELFGED--IAL------PDGSIDRKKLGAIVFSN 151 (212)
Q Consensus 110 ----~~~~---~~~~~-------------------~~~----~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~ 151 (212)
..+. +.+.. ... ......++.. ..+ +.|+.+|-.++..+..+
T Consensus 84 i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 163 (228)
T cd03257 84 IQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALN 163 (228)
T ss_pred EEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcC
Confidence 0000 00000 000 1223344432 111 23566788888888898
Q ss_pred hH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 152 KD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
|+ +++++.+.+++.....+.+.+.+.. .....+++.+|.+.+. ..+||+++++.
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~--~~~~d~i~~l~ 220 (228)
T cd03257 164 PKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVV--AKIADRVAVMY 220 (228)
T ss_pred CCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhcCeEEEEe
Confidence 88 6688999999999999999998775 3256788889998764 46899999875
No 112
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.32 E-value=2.9e-12 Score=106.22 Aligned_cols=153 Identities=14% Similarity=0.162 Sum_probs=101.6
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------- 110 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------- 110 (212)
+++.+++|. + ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+.
T Consensus 6 ~~~l~~~~~--~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 6 VKNLVKKFH--G--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EeceEEEEC--C--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 445555553 1 1367888999999999999999999999999999986 32233221110
Q ss_pred ---cc-ccc-------CCchh----------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcC
Q psy17138 111 ---HR-AYD-------VGTRG----------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFS 150 (212)
Q Consensus 111 ---~~-~~~-------~~~~~----------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~ 150 (212)
.. .|. +.... ....++.+|.... -+.|+.+|-.++..+..
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~ 161 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM 161 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc
Confidence 00 010 10001 1122233343211 12356778888888888
Q ss_pred ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 151 NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+|+ +++++.+.+++...+.+.+.+.++......+++.+|.+.+. .++||+++++.
T Consensus 162 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~--~~~~d~i~~l~ 218 (250)
T PRK11264 162 RPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFA--RDVADRAIFMD 218 (250)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence 988 56889999999999999998887753355777779998663 57899999885
No 113
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.31 E-value=5.5e-12 Score=106.28 Aligned_cols=141 Identities=23% Similarity=0.204 Sum_probs=100.5
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccccc--------------------ccCCc
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRA--------------------YDVGT 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~--------------------~~~~~ 118 (212)
-.+++.++....|+++.|.|-||||||||.|++++| |-..++..++..-. +.|..
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 456678999999999999999999999999999987 55556655442110 11110
Q ss_pred h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 119 R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 119 ~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
. ...+.++..|..-+ -+.|+.+|.-|++.+-.||+ ++++.-+.++|.++.
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~ 201 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence 0 11122233333222 14678889999999999998 557777889999999
Q ss_pred HHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEE
Q psy17138 169 QVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 169 ~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
++++.+.+++ .-.+++++-+|.|.|| .++-|++.++
T Consensus 202 ~mQdeLl~Lq~~l~KTIvFitHDLdEA--lriG~rIaim 238 (386)
T COG4175 202 EMQDELLELQAKLKKTIVFITHDLDEA--LRIGDRIAIM 238 (386)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHH--HhccceEEEe
Confidence 9999998887 4456666669999997 4677877664
No 114
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=2.8e-12 Score=103.31 Aligned_cols=158 Identities=11% Similarity=0.016 Sum_probs=100.8
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC--------eeeeCCccc-------c-
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA--------GLINCDQLG-------H- 111 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~--------~vi~~D~i~-------~- 111 (212)
.+++.++.+...+.....++++++...+|++++|+|+||||||||+++|+++-. ..++...+. +
T Consensus 5 ~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 84 (202)
T cd03233 5 SWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGE 84 (202)
T ss_pred EEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcce
Confidence 355555666543233356777889999999999999999999999999998632 223221111 0
Q ss_pred ccccCC-------chhHHHHHHH--h-CC-ccC-CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhh
Q psy17138 112 RAYDVG-------TRGNQVVREL--F-GE-DIA-LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARL 177 (212)
Q Consensus 112 ~~~~~~-------~~~~~~~~~~--~-g~-~~~-~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~ 177 (212)
-.|.+. ....+.+... . .. ... -+.|+.+|-.++..+..+|+ +++++.+.+++...+.+.+.+.+.
T Consensus 85 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 164 (202)
T cd03233 85 IIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164 (202)
T ss_pred EEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 112111 1122222110 0 11 110 13467778889999999998 568899999999999999999887
Q ss_pred c-C-CCcEEEEEeccccccccccccCeEEEEE
Q psy17138 178 S-E-SHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 178 ~-~-~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
. . +..++++..|.+.+. .++||+++++.
T Consensus 165 ~~~~~~t~ii~~~h~~~~~--~~~~d~i~~l~ 194 (202)
T cd03233 165 ADVLKTTTFVSLYQASDEI--YDLFDKVLVLY 194 (202)
T ss_pred HHhCCCEEEEEEcCCHHHH--HHhCCeEEEEE
Confidence 5 3 233455555554342 46899999875
No 115
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=1e-12 Score=115.41 Aligned_cols=155 Identities=14% Similarity=0.070 Sum_probs=106.2
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------cc-c
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------RA-Y 114 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------~~-~ 114 (212)
..+++.+++|.. ...++++++...+|.+++|+||||||||||+++|+++ |...++...+.. .+ |
T Consensus 20 l~l~~v~~~~~~----~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 20 LEIRNLTKSFDG----QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred EEEEeEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 446666666631 1356778899999999999999999999999999987 434444332210 00 0
Q ss_pred -------cCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHH
Q psy17138 115 -------DVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNK 157 (212)
Q Consensus 115 -------~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~ 157 (212)
.+... ...++++.+|..-+ -+.|+.+|-.|+..+..+|+ ++++
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE 175 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE 175 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11100 11233344444321 13467788899999999998 5688
Q ss_pred HHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 158 LNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 158 ~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+-+++..+..+.+.+.++. .....+++.+|.+.++ ..+||+++++.
T Consensus 176 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea--~~laDri~vl~ 224 (377)
T PRK11607 176 PMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEA--MTMAGRIAIMN 224 (377)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH--HHhCCEEEEEe
Confidence 888999999999988776664 3346777779998875 47999999885
No 116
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.31 E-value=2e-12 Score=104.68 Aligned_cols=142 Identities=13% Similarity=0.108 Sum_probs=97.3
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------c-ccccCCc-------h
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------H-RAYDVGT-------R 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~-~~~~~~~-------~ 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.++. .
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRN 94 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCc
Confidence 367778899999999999999999999999999987 33333321110 0 0011100 0
Q ss_pred ---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138 120 ---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ 169 (212)
Q Consensus 120 ---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~ 169 (212)
......+.+|.... -+.|+.+|-.++..+..+|+ +++++.+.++|...+.
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 174 (214)
T cd03292 95 VYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 01122333343211 12356677888888889988 5688999999999999
Q ss_pred HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.++++......+++.+|.+.+. .++||+++++.
T Consensus 175 ~~~~l~~~~~~~~tiiivtH~~~~~--~~~~d~i~~l~ 210 (214)
T cd03292 175 IMNLLKKINKAGTTVVVATHAKELV--DTTRHRVIALE 210 (214)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence 9999988753356788889988654 46899999885
No 117
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.6e-12 Score=106.09 Aligned_cols=153 Identities=15% Similarity=0.129 Sum_probs=102.8
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAY 114 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~ 114 (212)
+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. . -.|
T Consensus 6 ~~~l~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 6 FKEVSYSSFG----KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred EEeEEEEeCC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 4555555531 1356778899999999999999999999999999986 33334332210 0 001
Q ss_pred cCCc-----------------------hhHHHHHHHhCCc--cC------CCCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138 115 DVGT-----------------------RGNQVVRELFGED--IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQA 161 (212)
Q Consensus 115 ~~~~-----------------------~~~~~~~~~~g~~--~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i 161 (212)
.+.. .....+++.+|.. .. -+.|+.+|..++..+..+|+ +++++.+.
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 161 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA 161 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 0000 0112234444442 11 12356678888888889988 56889999
Q ss_pred hhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 162 IWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 162 ~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++...+.+.+.+++.. .....+++.+|.+.+. ..+||+++++.
T Consensus 162 LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~--~~~~d~i~~l~ 206 (241)
T PRK14250 162 LDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQA--KRIGDYTAFLN 206 (241)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH--HHhCCEEEEEe
Confidence 99999999999888775 3356778889988763 46899999885
No 118
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=4.8e-12 Score=104.20 Aligned_cols=142 Identities=17% Similarity=0.143 Sum_probs=97.8
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------c-ccccCC-------ch
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------H-RAYDVG-------TR 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~-~~~~~~-------~~ 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+. ..
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 94 (241)
T cd03256 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLS 94 (241)
T ss_pred EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCc
Confidence 356778899999999999999999999999999986 33334321111 0 001110 00
Q ss_pred h-----------------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138 120 G-----------------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQA 161 (212)
Q Consensus 120 ~-----------------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i 161 (212)
. ...+++.+|.... -+.|+.+|-.|+..+..+|+ +++++.+.
T Consensus 95 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 174 (241)
T cd03256 95 VLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS 174 (241)
T ss_pred HHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 0 1112333443211 12356678888888888888 56889999
Q ss_pred hhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 162 IWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 162 ~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++|.....+.+.+++.. .....+++.+|.+.+. .++||+++++.
T Consensus 175 LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~--~~~~d~v~~l~ 219 (241)
T cd03256 175 LDPASSRQVMDLLKRINREEGITVIVSLHQVDLA--REYADRIVGLK 219 (241)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 99999999999998875 3356788889998764 56899999885
No 119
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.30 E-value=3.6e-12 Score=104.62 Aligned_cols=139 Identities=17% Similarity=0.120 Sum_probs=94.9
Q ss_pred CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc----ccccCC-------ch-----------
Q psy17138 67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH----RAYDVG-------TR----------- 119 (212)
Q Consensus 67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~----~~~~~~-------~~----------- 119 (212)
+++++...+|.+++|+|+||||||||+++|+++ |...++...+.. ..|.+. ..
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 356778889999999999999999999999987 333333221110 001000 00
Q ss_pred ------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc
Q psy17138 120 ------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS 178 (212)
Q Consensus 120 ------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~ 178 (212)
.....++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.+++.....+.+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 161 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 01223334443211 13366778889889999998 6688999999999999999998765
Q ss_pred -CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 179 -ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 179 -~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.....+++.+|.+.+. ..+||+++++.
T Consensus 162 ~~~~~tii~~sH~~~~~--~~~~d~v~~l~ 189 (230)
T TIGR01184 162 EEHRVTVLMVTHDVDEA--LLLSDRVVMLT 189 (230)
T ss_pred HhcCCEEEEEeCCHHHH--HHhcCEEEEEe
Confidence 3356778889998653 57899998875
No 120
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2.8e-12 Score=105.75 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=101.6
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------cc-c
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------HR-A 113 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~~-~ 113 (212)
+++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .
T Consensus 6 ~~~l~~~~~~----~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 6 AKNLAKAYKG----RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred EeCcEEEeCC----EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 4455555531 1356778899999999999999999999999999986 33333321110 00 0
Q ss_pred ccCC-------ch----------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138 114 YDVG-------TR----------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM 155 (212)
Q Consensus 114 ~~~~-------~~----------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~ 155 (212)
|.+. .. ....+++.+|..-. -+.|+.+|..++..+..+|+ ++
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILL 161 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1000 00 11223333443211 13466677788888888888 56
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++.+.+++.....+.+.+.++......+++.+|.+.+. .++||+++++.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~--~~~~d~v~~l~ 211 (241)
T PRK10895 162 DEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRET--LAVCERAYIVS 211 (241)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH--HHhcCEEEEEe
Confidence 889999999999999888877654456788889988653 46899998875
No 121
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.30 E-value=3.4e-12 Score=103.75 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=97.1
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------c-ccccCC-------ch----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------H-RAYDVG-------TR---- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~-~~~~~~-------~~---- 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+. ..
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 95 (220)
T cd03263 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREH 95 (220)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHH
Confidence 367788899999999999999999999999999987 33333322210 0 001100 00
Q ss_pred -----------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHH
Q psy17138 120 -----------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEE 173 (212)
Q Consensus 120 -----------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~ 173 (212)
....+++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.+++.....+.+.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 175 (220)
T cd03263 96 LRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDL 175 (220)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHH
Confidence 01122333443211 12356677888888888888 56888999999999999999
Q ss_pred HHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 174 IARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 174 i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+...+ ..+++.+|.+.+. ..+||+++++.
T Consensus 176 l~~~~~~-~tii~~sH~~~~~--~~~~d~i~~l~ 206 (220)
T cd03263 176 ILEVRKG-RSIILTTHSMDEA--EALCDRIAIMS 206 (220)
T ss_pred HHHHhcC-CEEEEEcCCHHHH--HHhcCEEEEEE
Confidence 9877543 6788889998764 46899998875
No 122
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=1.8e-12 Score=114.46 Aligned_cols=142 Identities=23% Similarity=0.198 Sum_probs=100.7
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c-ccccC-------Cc
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H-RAYDV-------GT 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~-~~~~~-------~~ 118 (212)
.+++++++...+|++++|+|+||||||||+++|+++ |...++...+. + -.|.+ ..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 357888999999999999999999999999999987 43444432211 0 01111 10
Q ss_pred h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 119 R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 119 ~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
. ....+++.+|..-+ -+.|+.+|-.|+..+..+|+ +++++.+.++|..+.
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~ 201 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT 201 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 0 01123344444221 13467778889999999998 568899999999999
Q ss_pred HHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+.++. .....+++.+|.+.++ ..+||+++++.
T Consensus 202 ~l~~~L~~l~~~~g~TIIivTHd~~~~--~~~~Dri~vL~ 239 (400)
T PRK10070 202 EMQDELVKLQAKHQRTIVFISHDLDEA--MRIGDRIAIMQ 239 (400)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHH--HHhCCEEEEEE
Confidence 9999998775 3456788889998775 47899999875
No 123
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.30 E-value=2.9e-12 Score=104.79 Aligned_cols=153 Identities=13% Similarity=0.075 Sum_probs=101.4
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---c-ccccCCch
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---H-RAYDVGTR 119 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---~-~~~~~~~~ 119 (212)
+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. . ..+.+...
T Consensus 25 ~~~~~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~t 100 (224)
T cd03220 25 ILGRKGEVGE----FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELT 100 (224)
T ss_pred hhhhhhhcCC----eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCc
Confidence 4444454432 2467788999999999999999999999999999986 22223221110 0 01111100
Q ss_pred ---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138 120 ---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ 169 (212)
Q Consensus 120 ---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~ 169 (212)
....+.+.+|..-. -+.|+.+|..++..+.++|+ +++++.+.+++...+.
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~ 180 (224)
T cd03220 101 GRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEK 180 (224)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 11122333342211 12356677788888989998 5688999999999999
Q ss_pred HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.+.+.......+++.+|.+.+. ..+||+++++.
T Consensus 181 ~~~~l~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~ 216 (224)
T cd03220 181 CQRRLRELLKQGKTVILVSHDPSSI--KRLCDRALVLE 216 (224)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 9998887653356788889998764 46899998875
No 124
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.29 E-value=2.8e-12 Score=105.78 Aligned_cols=152 Identities=13% Similarity=0.108 Sum_probs=102.9
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c--cc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H--RA 113 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~--~~ 113 (212)
+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.
T Consensus 5 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 5 LEGLSVSFDG----FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEeeEEEcCC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 4455555531 1367888999999999999999999999999999986 33333322110 0 00
Q ss_pred ccCC-------ch-----------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcC
Q psy17138 114 YDVG-------TR-----------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFS 150 (212)
Q Consensus 114 ~~~~-------~~-----------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~ 150 (212)
|.+. .. .....++.+|..-. -+.|+.+|..++..+..
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~ 160 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ 160 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 1000 00 11222333443211 12356678888888889
Q ss_pred ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 151 NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+|+ +++++.+.++|...+.+.+.+++... ...+++.+|.+.+. .++||+++++.
T Consensus 161 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~--~~~~d~i~~l~ 216 (242)
T TIGR03411 161 DPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFV--RSIADKVTVLH 216 (242)
T ss_pred CCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHH--HHhCCEEEEEE
Confidence 888 66889999999999999999988754 46788889998764 46899998875
No 125
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.29 E-value=4e-12 Score=100.28 Aligned_cols=137 Identities=16% Similarity=0.130 Sum_probs=94.5
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------ccccCCch-hHH-HHHHHhC
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------RAYDVGTR-GNQ-VVRELFG 129 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~~~~~~~~-~~~-~~~~~~g 129 (212)
.++++++...+|++++|+|+||||||||+++|+++ |...++...+.. -.|.+... .+. .+.+...
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~ 96 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLG 96 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhc
Confidence 56778899999999999999999999999999987 333344322210 01111110 000 0011111
Q ss_pred CccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 130 EDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 130 ~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+ +.|+.+|-.++..+..+|+ +++++.+.+++...+.+.+.+.+... ...+++.+|.+.+. ..||++++++
T Consensus 97 ~~L--S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~---~~~d~~~~l~ 170 (178)
T cd03247 97 RRF--SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLIWITHHLTGI---EHMDKILFLE 170 (178)
T ss_pred ccC--CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHH---HhCCEEEEEE
Confidence 122 4567788889999999998 56888999999999999999987743 46777778988664 3699998875
No 126
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=2.9e-12 Score=110.56 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=106.7
Q ss_pred ceechhhhhhhhc------cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------
Q psy17138 48 KLSSSNLRMRELG------TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------ 110 (212)
Q Consensus 48 ~iss~~~r~~~~g------~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------ 110 (212)
++++.++.|...+ .....++++++...+|+++||+|+||||||||+++|.++ |...++...+.
T Consensus 7 ~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~ 86 (327)
T PRK11308 7 QAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEA 86 (327)
T ss_pred EEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHH
Confidence 4555555554211 123578889999999999999999999999999999987 43344332210
Q ss_pred -----cc-cccCCc-------------------------------hhHHHHHHHhCCc--cC------CCCCccchHhHH
Q psy17138 111 -----HR-AYDVGT-------------------------------RGNQVVRELFGED--IA------LPDGSIDRKKLG 145 (212)
Q Consensus 111 -----~~-~~~~~~-------------------------------~~~~~~~~~~g~~--~~------~~~~~~~r~~l~ 145 (212)
+. .|.++. .....+++.+|.. .+ -+.|+.+|..++
T Consensus 87 ~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iA 166 (327)
T PRK11308 87 QKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIA 166 (327)
T ss_pred HHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHH
Confidence 00 010000 0112233344432 11 134677888999
Q ss_pred HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
..+..+|+ +++++...+++.....+.+.+.++. .....+++-+|.+-.+ ..+||++++++.
T Consensus 167 rAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~--~~~adrv~vm~~ 230 (327)
T PRK11308 167 RALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVV--EHIADEVMVMYL 230 (327)
T ss_pred HHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEEC
Confidence 99999998 4578899999999999999988775 3345677779998764 468999998863
No 127
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=2.6e-12 Score=108.18 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=103.7
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAY 114 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~ 114 (212)
+.+.+++|.. ....++++++...+|.+++|+|+||||||||+++|+++ |...++...+. . -.|
T Consensus 7 ~~~l~~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 7 VEDLHFRYKD---GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred EEEEEEEeCC---CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 4555555531 12367888899999999999999999999999999986 43334332210 0 011
Q ss_pred cCCc--------h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138 115 DVGT--------R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN 156 (212)
Q Consensus 115 ~~~~--------~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~ 156 (212)
.+.. . ......+.+|..-. -+.|+.+|..++..+..+|+ +++
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD 163 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD 163 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 1110 0 01122233343211 12356678889989999988 568
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.+.++|.....+.+.+.++......+++.+|.+.+. .++||+++++.
T Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~--~~~~d~i~~l~ 212 (274)
T PRK13647 164 EPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLA--AEWADQVIVLK 212 (274)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 88999999999999999987753356788889998764 46899999885
No 128
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.29 E-value=3.6e-12 Score=115.77 Aligned_cols=153 Identities=14% Similarity=0.066 Sum_probs=105.4
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------cc-c
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------HR-A 113 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~~-~ 113 (212)
+++.+++|.. ...++++++...+|+++||+||||||||||+++|+++ |...++...+. +. .
T Consensus 7 ~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 7 LKGIDKAFPG----VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred EeeeEEEeCC----eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 5555566631 2467888999999999999999999999999999986 33334321110 00 0
Q ss_pred ccCC----------------------------c----hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH-
Q psy17138 114 YDVG----------------------------T----RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 114 ~~~~----------------------------~----~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~- 153 (212)
|.+. . .....+++.+|.... -+.|+.+|..++..+..+|+
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 162 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV 162 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1000 0 011233444444321 12467778899999999998
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.++|.....+.+.+.++......+++.+|.+.+. ..+||+++++.
T Consensus 163 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~--~~~~d~i~~l~ 215 (501)
T PRK10762 163 IIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEI--FEICDDVTVFR 215 (501)
T ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence 66899999999999999998887753356778889998764 47999999885
No 129
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.29 E-value=1.9e-11 Score=94.72 Aligned_cols=143 Identities=16% Similarity=0.092 Sum_probs=91.7
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-------------------------cc
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-------------------------RA 113 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-------------------------~~ 113 (212)
+-++++++...+|++++|+||||||||||+|+++.| |...+.+..+.- ++
T Consensus 17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDN 96 (223)
T COG4619 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDN 96 (223)
T ss_pred eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhc
Confidence 456778999999999999999999999999999987 444444433210 00
Q ss_pred -c--------cCCchhHHHHHHHhCCccC--------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138 114 -Y--------DVGTRGNQVVRELFGEDIA--------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI 174 (212)
Q Consensus 114 -~--------~~~~~~~~~~~~~~g~~~~--------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i 174 (212)
. .++......++..|+.+-. .+.|..+|-.|.+-+---|. ++++.++.+++.-.+.+.+.|
T Consensus 97 lifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi 176 (223)
T COG4619 97 LIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176 (223)
T ss_pred cccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHH
Confidence 0 0011123334444443211 13455666665544333444 567788889999999998888
Q ss_pred Hhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 175 ARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 175 ~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
-... +....++.-+|.-.++ -..+|++|.+..
T Consensus 177 ~~~v~~q~vAv~WiTHd~dqa--~rha~k~itl~~ 209 (223)
T COG4619 177 HRYVREQNVAVLWITHDKDQA--IRHADKVITLQP 209 (223)
T ss_pred HHHhhhhceEEEEEecChHHH--hhhhheEEEecc
Confidence 7665 4444444558887664 357899998864
No 130
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=3e-12 Score=108.49 Aligned_cols=157 Identities=11% Similarity=0.115 Sum_probs=105.0
Q ss_pred eechhhhhhhhcc-ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138 49 LSSSNLRMRELGT-LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------ 110 (212)
Q Consensus 49 iss~~~r~~~~g~-~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------ 110 (212)
+.+.+++|..... ....++++++...+|.+++|+|+||||||||+++|+++ |...++...+.
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (287)
T PRK13641 5 FENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLR 84 (287)
T ss_pred EEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence 4555565532110 12467888999999999999999999999999999987 43333332110
Q ss_pred cc-cccCCc--------h---------------------hHHHHHHHhCCc--cC------CCCCccchHhHHHHhcCCh
Q psy17138 111 HR-AYDVGT--------R---------------------GNQVVRELFGED--IA------LPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 111 ~~-~~~~~~--------~---------------------~~~~~~~~~g~~--~~------~~~~~~~r~~l~~~vf~~~ 152 (212)
+. .|.+.. . ....+++.+|.. .. -+.|+.+|..|+..+..+|
T Consensus 85 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p 164 (287)
T PRK13641 85 KKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEP 164 (287)
T ss_pred hceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 00 011110 0 012223344542 11 1235677888998999999
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+ +++++.+.+++.....+.+.+.++......+++.+|.+.+. ..+||+++++.
T Consensus 165 ~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~--~~~~d~v~~l~ 219 (287)
T PRK13641 165 EILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDV--AEYADDVLVLE 219 (287)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 8 56889999999999999999988753356777889998764 46899999885
No 131
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.29 E-value=2.3e-12 Score=98.50 Aligned_cols=120 Identities=14% Similarity=0.077 Sum_probs=89.6
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-----eeeeCCccccccccCCchhHHHHHHHhCCccCCCCCcc
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-----GLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSI 139 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-----~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 139 (212)
..+++++....|++++|+|+||||||||+++|+++-. ..++.. .+-.|.+. -+.|+.
T Consensus 15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--~~i~~~~~----------------lS~G~~ 76 (144)
T cd03221 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--VKIGYFEQ----------------LSGGEK 76 (144)
T ss_pred EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--EEEEEEcc----------------CCHHHH
Confidence 4566788899999999999999999999999998721 122210 00111111 246677
Q ss_pred chHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 140 DRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 140 ~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+|-.++..+..+|+ +++++.+.+++.....+.+.++++ ...+++.+|.+.+. ..+||+++++.
T Consensus 77 ~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~--~~~~d~v~~l~ 141 (144)
T cd03221 77 MRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFL--DQVATKIIELE 141 (144)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHH--HHhCCEEEEEe
Confidence 88888989999988 568888899999999999888875 24777778888664 46899998875
No 132
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=4.1e-12 Score=105.60 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=103.4
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c--c
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H--R 112 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~--~ 112 (212)
.+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -
T Consensus 7 ~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 7 SVSGLMMRFGG----LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred EEeeEEEEECC----EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 35555565531 2366778899999999999999999999999999987 43333322110 0 0
Q ss_pred cccCCc-------hh------------------------------------HHHHHHHhCCccC-------CCCCccchH
Q psy17138 113 AYDVGT-------RG------------------------------------NQVVRELFGEDIA-------LPDGSIDRK 142 (212)
Q Consensus 113 ~~~~~~-------~~------------------------------------~~~~~~~~g~~~~-------~~~~~~~r~ 142 (212)
.|.+.. .. ....++.+|.... -+.|+.+|.
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 162 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL 162 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence 010110 00 1111223333211 134567788
Q ss_pred hHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcC-CCcEEEEEeccccccccccccCeEEEEE
Q psy17138 143 KLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSE-SHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 143 ~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~-~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.++..+..+|+ +++++.+.+++...+.+.+.+.++.. ....+++.+|.+.+. .++||+++++.
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~--~~~~d~i~~l~ 228 (255)
T PRK11300 163 EIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLV--MGISDRIYVVN 228 (255)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 88889999998 66889999999999999999987753 256788889998764 47899999885
No 133
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=2.1e-12 Score=107.48 Aligned_cols=153 Identities=16% Similarity=0.107 Sum_probs=102.4
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAY 114 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~ 114 (212)
+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|
T Consensus 5 ~~~l~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 5 TENLTVGYGT----KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEeEEEEECC----EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 4445555531 1356778899999999999999999999999999986 32233221110 0 001
Q ss_pred cC-------Cch-------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138 115 DV-------GTR-------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 115 ~~-------~~~-------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-- 153 (212)
.+ ... .....++.+|.... -+.|+.+|-.++..+..+|+
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 160 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV 160 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 00 000 11222333443211 13466778889989999998
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++.....+.+.+.++......+++.+|.+.+. .++||+++++.
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~--~~~~d~i~~l~ 212 (255)
T PRK11231 161 LLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQA--SRYCDHLVVLA 212 (255)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH--HHhcCEEEEEE
Confidence 56889999999999999999987753356788889988763 57899999885
No 134
>PRK10908 cell division protein FtsE; Provisional
Probab=99.29 E-value=4e-12 Score=103.61 Aligned_cols=142 Identities=11% Similarity=0.041 Sum_probs=97.1
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc-cccCC-------ch
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR-AYDVG-------TR 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~-~~~~~-------~~ 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .|.+. ..
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 95 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRT 95 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccccc
Confidence 356778899999999999999999999999999986 33333321110 00 01111 00
Q ss_pred h---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138 120 G---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ 169 (212)
Q Consensus 120 ~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~ 169 (212)
. ....++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.+++...+.
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (222)
T PRK10908 96 VYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEG 175 (222)
T ss_pred HHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 0 1122333443211 12356678888888888888 5688999999999999
Q ss_pred HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.+.+.......+++.+|.+.+. ..+||+++++.
T Consensus 176 l~~~l~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~ 211 (222)
T PRK10908 176 ILRLFEEFNRVGVTVLMATHDIGLI--SRRSYRMLTLS 211 (222)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 9998887753356778889998764 46899999875
No 135
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.28 E-value=3.2e-12 Score=102.87 Aligned_cols=140 Identities=17% Similarity=0.162 Sum_probs=94.9
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c-cccc-------CCc
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H-RAYD-------VGT 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~-~~~~-------~~~ 118 (212)
..++++++...+|++++|+|+||||||||+++|+++ |...++...+. + -.|. +..
T Consensus 12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (206)
T TIGR03608 12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENE 91 (206)
T ss_pred EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCC
Confidence 356788899999999999999999999999999986 33333322110 0 0010 000
Q ss_pred h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 119 R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 119 ~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
. ....+++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.+++...+
T Consensus 92 t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~ 171 (206)
T TIGR03608 92 TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRD 171 (206)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHH
Confidence 0 01223333443211 12356678888889999998 568899999999999
Q ss_pred HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
.+.+.+++.......+++.+|.+... .+||+++++
T Consensus 172 ~l~~~l~~~~~~~~tii~~sh~~~~~---~~~d~i~~l 206 (206)
T TIGR03608 172 EVLDLLLELNDEGKTIIIVTHDPEVA---KQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHH---hhcCEEEeC
Confidence 99999987753356777779988543 479998763
No 136
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=4.2e-12 Score=102.65 Aligned_cols=138 Identities=17% Similarity=0.140 Sum_probs=94.8
Q ss_pred CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-------ccccCC-------ch---------
Q psy17138 68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-------RAYDVG-------TR--------- 119 (212)
Q Consensus 68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-------~~~~~~-------~~--------- 119 (212)
++++...+|++++|+|+||||||||+++|+++ |...++...+.. -.|.+. ..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 68889999999999999999999999999986 333333221100 000000 00
Q ss_pred ------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc
Q psy17138 120 ------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS 178 (212)
Q Consensus 120 ------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~ 178 (212)
......+.+|.... -+.|+.+|-.++..+..+|+ +++++.+.+++.....+.+.+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 175 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH 175 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 11223333443211 13356678888888888888 5688999999999999999998775
Q ss_pred -CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 179 -ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 179 -~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.....+++.+|.+.+. ..+||+++++.
T Consensus 176 ~~~~~tii~~sH~~~~~--~~~~d~i~~l~ 203 (211)
T cd03298 176 AETKMTVLMVTHQPEDA--KRLAQRVVFLD 203 (211)
T ss_pred HhcCCEEEEEecCHHHH--HhhhCEEEEEE
Confidence 3356777779998764 46899999875
No 137
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.28 E-value=2.5e-12 Score=111.10 Aligned_cols=144 Identities=17% Similarity=0.113 Sum_probs=100.4
Q ss_pred cCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------------cc---cccC
Q psy17138 63 RKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------------HR---AYDV 116 (212)
Q Consensus 63 l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------------~~---~~~~ 116 (212)
...++++++...+|+++||+|+||||||||+++|.++ |...+++..+. ++ .+.+
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 113 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence 4577889999999999999999999999999999987 33334322210 00 0111
Q ss_pred Cchh-----------------------HHHHHHHhCCc--cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138 117 GTRG-----------------------NQVVRELFGED--IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIW 163 (212)
Q Consensus 117 ~~~~-----------------------~~~~~~~~g~~--~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~ 163 (212)
.... ..++++.+|.. .. -+.|+.+|..++..+..+|+ +++++.+.++
T Consensus 114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD 193 (331)
T PRK15079 114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193 (331)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 1000 11223333431 11 13467788899999999998 5588899999
Q ss_pred HHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 164 PLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 164 p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
+.....+.+.+.++. .....+++-+|.+..+ ..+||++++++.
T Consensus 194 ~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~--~~~~dri~vl~~ 237 (331)
T PRK15079 194 VSIQAQVVNLLQQLQREMGLSLIFIAHDLAVV--KHISDRVLVMYL 237 (331)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEEC
Confidence 999999999998876 3345677779999765 468999999863
No 138
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.28 E-value=2.8e-12 Score=107.61 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=102.6
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------c
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------H 111 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~ 111 (212)
++++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +
T Consensus 9 ~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 9 DMRGVSFTRGN----RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred EEeCeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 35555555531 1356778899999999999999999999999999986 33333321110 0
Q ss_pred c-cccCC-------chhHH----------------------HHHHHhCCccC-------CCCCccchHhHHHHhcCChH-
Q psy17138 112 R-AYDVG-------TRGNQ----------------------VVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 112 ~-~~~~~-------~~~~~----------------------~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~- 153 (212)
. .|.+. ....+ ..++.+|..-. -+.|+.+|-.++..+..+|+
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l 164 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL 164 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 0 01111 01111 12233343211 12356678888888989988
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++.....+.+.+.++. .....+++.+|.+.+. ..+||+++++.
T Consensus 165 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~--~~~~d~v~~l~ 218 (269)
T PRK11831 165 IMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEV--LSIADHAYIVA 218 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH--HHhhCEEEEEE
Confidence 5688999999999999999998775 3356778889998664 57899998875
No 139
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.28 E-value=7e-12 Score=103.42 Aligned_cols=142 Identities=16% Similarity=0.145 Sum_probs=97.2
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc-cccCC-------ch
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR-AYDVG-------TR 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~-~~~~~-------~~ 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .|.+. ..
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLT 95 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccccc
Confidence 357788999999999999999999999999999986 33333321110 00 01100 00
Q ss_pred -----------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138 120 -----------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQA 161 (212)
Q Consensus 120 -----------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i 161 (212)
....+++.+|.... -+.|+.+|..++..+..+|+ +++++.+.
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 175 (243)
T TIGR02315 96 VLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175 (243)
T ss_pred HHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 01122233332211 12356678888889999988 56889999
Q ss_pred hhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 162 IWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 162 ~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++.....+.+.+.+.. .....+++.+|.+.+. .++||+++++.
T Consensus 176 LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~--~~~~d~v~~l~ 220 (243)
T TIGR02315 176 LDPKTSKQVMDYLKRINKEDGITVIINLHQVDLA--KKYADRIVGLK 220 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhcCeEEEEE
Confidence 99999999999998765 3356788889988663 57899998875
No 140
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.28 E-value=3.8e-12 Score=106.07 Aligned_cols=155 Identities=16% Similarity=0.169 Sum_probs=105.1
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
.++.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+.
T Consensus 6 l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 6 LNVIDLHKRYGE----HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred EEEeeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 346666666641 1367788999999999999999999999999999987 33333321110
Q ss_pred ----------cc-cccCC-------ch----------------------hHHHHHHHhCCccC--C------CCCccchH
Q psy17138 111 ----------HR-AYDVG-------TR----------------------GNQVVRELFGEDIA--L------PDGSIDRK 142 (212)
Q Consensus 111 ----------~~-~~~~~-------~~----------------------~~~~~~~~~g~~~~--~------~~~~~~r~ 142 (212)
+. .|.+. .. ....+++.+|.... . +.|+.+|.
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv 161 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRV 161 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 00 01000 00 01223344444321 1 23456778
Q ss_pred hHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 143 KLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 143 ~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.++..+..+|+ +++++.+.+++...+.+.+.+.++......+++.+|.+.+. .++||+++++.
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~--~~~~d~i~~l~ 226 (257)
T PRK10619 162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA--RHVSSHVIFLH 226 (257)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence 88889999988 56889999999999999999888753456777779988764 46899999885
No 141
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.28 E-value=4.8e-12 Score=103.61 Aligned_cols=142 Identities=18% Similarity=0.218 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-ccccCCc-------hh-
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RAYDVGT-------RG- 120 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~~~~~~-------~~- 120 (212)
..++++++...+|++++|+|+||||||||+++|+++ |...++...+. + -.|.+.. ..
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE 93 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHH
Confidence 356888999999999999999999999999999986 33333321110 0 0111110 00
Q ss_pred -----------------HHHHHHHhC-C-ccC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHH
Q psy17138 121 -----------------NQVVRELFG-E-DIA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEE 173 (212)
Q Consensus 121 -----------------~~~~~~~~g-~-~~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~ 173 (212)
...+...++ . ... -+.|+.+|..++..+..+|+ +++++.+.+++.....+.+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~ 173 (230)
T TIGR03410 94 ENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRV 173 (230)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 112222222 1 110 12356677788888888888 66889999999999999999
Q ss_pred HHhhcC-CCcEEEEEeccccccccccccCeEEEEE
Q psy17138 174 IARLSE-SHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 174 i~~~~~-~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+... ....+++.+|.+.+. ..+||+++++.
T Consensus 174 l~~~~~~~~~tii~~sH~~~~~--~~~~d~v~~l~ 206 (230)
T TIGR03410 174 IRRLRAEGGMAILLVEQYLDFA--RELADRYYVME 206 (230)
T ss_pred HHHHHHcCCcEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 987753 356788889998764 56899998875
No 142
>PRK07429 phosphoribulokinase; Provisional
Probab=99.28 E-value=1.8e-12 Score=111.56 Aligned_cols=126 Identities=19% Similarity=0.261 Sum_probs=82.7
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc-C---CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHh
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL-G---AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIV 148 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-g---~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~v 148 (212)
..++.+|||+|+|||||||+++.|+++ + ..+++.|... . + . ......+|...++.. ..+. ..+
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~-~-~--~----~~~r~~~g~~~l~p~-~~~~----d~l 71 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH-S-Y--D----RKQRKELGITALDPR-ANNL----DIM 71 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc-c-C--C----HHHHHhcCCcccCcc-chHH----HHH
Confidence 457899999999999999999999965 4 4577777642 1 1 1 112233454333221 1111 235
Q ss_pred cCChHHHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEecc-ccccccccccCeEEEEEeCCC
Q psy17138 149 FSNKDEMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAV-LLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 149 f~~~~~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~-l~e~~~~~~~d~v~~v~~~~~ 211 (212)
+++...+...+.+.+|.+.+.......... ...+++|+|+.+ +++..++++||.+|+|++|.+
T Consensus 72 ~~~l~~L~~g~~I~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~e 136 (327)
T PRK07429 72 YEHLKALKTGQPILKPIYNHETGTFDPPEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEE 136 (327)
T ss_pred HHHHHHHHCCCceecceeecCCCCcCCcEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHH
Confidence 555555556667788887776543321111 446799999997 566677899999999999875
No 143
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.28 E-value=2.7e-12 Score=116.89 Aligned_cols=155 Identities=14% Similarity=0.049 Sum_probs=107.0
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------cc
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------HR 112 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~~ 112 (212)
..+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. ..
T Consensus 12 l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 12 LCARSISKQYSG----VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred EEEEeEEEEeCC----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 346666666642 2367888999999999999999999999999999986 33333322110 00
Q ss_pred -cccCCc------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138 113 -AYDVGT------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL 158 (212)
Q Consensus 113 -~~~~~~------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~ 158 (212)
.|.+.. ......+..+|.... -+.|+.+|..++..+..+|+ +++++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEP 167 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEP 167 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 011110 011223444554321 12356778889999999998 56889
Q ss_pred HhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 159 NQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 159 ~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.++|.....+.+.++++......+++.+|.+.+. ..+||+++++.
T Consensus 168 t~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~--~~~~d~i~~l~ 214 (510)
T PRK15439 168 TASLTPAETERLFSRIRELLAQGVGIVFISHKLPEI--RQLADRISVMR 214 (510)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 999999999999999988753356788889998764 47899999885
No 144
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.28 E-value=6.8e-12 Score=103.21 Aligned_cols=140 Identities=13% Similarity=0.106 Sum_probs=96.7
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cccccCC-------chh----
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HRAYDVG-------TRG---- 120 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~~~~~~-------~~~---- 120 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +-.|.+. ...
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l 95 (236)
T TIGR03864 16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNL 95 (236)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHH
Confidence 56778899999999999999999999999999986 43334332210 0011111 000
Q ss_pred -----------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138 121 -----------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI 174 (212)
Q Consensus 121 -----------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i 174 (212)
...+++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.+++...+.+.+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 175 (236)
T TIGR03864 96 RYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHV 175 (236)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHH
Confidence 1122333443211 12356678888889999988 668899999999999999998
Q ss_pred Hhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 175 ARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 175 ~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.. .....+++.+|.+.+. . .||+++++.
T Consensus 176 ~~~~~~~~~tiii~sH~~~~~--~-~~d~i~~l~ 206 (236)
T TIGR03864 176 RALCRDQGLSVLWATHLVDEI--E-ADDRLVVLH 206 (236)
T ss_pred HHHHHhCCCEEEEEecChhhH--h-hCCEEEEEe
Confidence 8775 3356788889998775 2 499999885
No 145
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=2.4e-12 Score=108.68 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=103.7
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------c-cc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------R-AY 114 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~-~~ 114 (212)
+.+.+++|...+ ....++++++...+|++++|+|+||||||||+++|+++ |...++...+.. . .|
T Consensus 7 ~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13650 7 VKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGM 85 (279)
T ss_pred EEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceE
Confidence 445555553211 11367888999999999999999999999999999987 433443322110 0 01
Q ss_pred cCC--------ch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138 115 DVG--------TR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN 156 (212)
Q Consensus 115 ~~~--------~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~ 156 (212)
.+. .. .....++.+|..-+ -+.|+.+|-.|+..+..+|+ +++
T Consensus 86 v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD 165 (279)
T PRK13650 86 VFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILD 165 (279)
T ss_pred EEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 000 00 11222333443211 12356678889999999998 568
Q ss_pred HHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 157 KLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.+.+++...+.+.+.+.++. .....+++.+|.+.+. .+||+++++.
T Consensus 166 EPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~---~~~dri~~l~ 214 (279)
T PRK13650 166 EATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV---ALSDRVLVMK 214 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH---HhCCEEEEEE
Confidence 8899999999999999988775 3356888889998765 3699998885
No 146
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=4.6e-12 Score=106.36 Aligned_cols=142 Identities=25% Similarity=0.201 Sum_probs=98.8
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c-ccccCC-------c
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H-RAYDVG-------T 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~-~~~~~~-------~ 118 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...+++..+. + -.|.+. .
T Consensus 38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 117 (269)
T cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR 117 (269)
T ss_pred eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence 356788999999999999999999999999999987 33334332110 0 001110 0
Q ss_pred hh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 119 RG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 119 ~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
.. ...+++.+|..-. -+.|+.+|-.|+..+..+|+ +++++.+.+++...+
T Consensus 118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~ 197 (269)
T cd03294 118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRR 197 (269)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 00 1122333443211 13467778889999999998 668999999999999
Q ss_pred HHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+.++. .....+++.+|.+.+. ..+||+++++.
T Consensus 198 ~l~~~l~~~~~~~g~tiii~tH~~~~~--~~~~d~v~~l~ 235 (269)
T cd03294 198 EMQDELLRLQAELQKTIVFITHDLDEA--LRLGDRIAIMK 235 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence 9999988775 3356788889998763 57899999885
No 147
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=4.3e-12 Score=107.59 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=99.3
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------cc-cccCC--------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------HR-AYDVG-------- 117 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~~-~~~~~-------- 117 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .|.++
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 367789999999999999999999999999999987 43344332110 00 01000
Q ss_pred ch---------------------hHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138 118 TR---------------------GNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI 166 (212)
Q Consensus 118 ~~---------------------~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~ 166 (212)
.. .+...++.+|.. ... +.|+.+|..|+..+..+|+ +++++.+.++|..
T Consensus 100 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~ 179 (288)
T PRK13643 100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179 (288)
T ss_pred chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHH
Confidence 00 122333444542 111 2356678889988889988 5688999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.+.+.+.++......+++.+|.+.+. ..+||+++++.
T Consensus 180 ~~~l~~~l~~l~~~g~til~vtHd~~~~--~~~~dri~~l~ 218 (288)
T PRK13643 180 RIEMMQLFESIHQSGQTVVLVTHLMDDV--ADYADYVYLLE 218 (288)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 9999998887753356788889998664 46899999875
No 148
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.28 E-value=2.2e-12 Score=111.44 Aligned_cols=160 Identities=14% Similarity=0.075 Sum_probs=107.8
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC--------eeeeCCccc-------
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA--------GLINCDQLG------- 110 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~--------~vi~~D~i~------- 110 (212)
-..+++.++.|...+.....++++++...+|+++||+|+||||||||+++|.++-. ..++...+.
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 35577777777543333467889999999999999999999999999999998632 223322210
Q ss_pred -----cc-cccCCc---------hh----------------------HHHHHHHhCCcc----C------CCCCccchHh
Q psy17138 111 -----HR-AYDVGT---------RG----------------------NQVVRELFGEDI----A------LPDGSIDRKK 143 (212)
Q Consensus 111 -----~~-~~~~~~---------~~----------------------~~~~~~~~g~~~----~------~~~~~~~r~~ 143 (212)
+. .|.++. .. ...+++.+|.+- . -+.|+.+|..
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~ 171 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVM 171 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHH
Confidence 00 011110 00 011222233210 0 1345667888
Q ss_pred HHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 144 LGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 144 l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
|+..+..+|+ +++++.+.+++.....+.+.+.++. .....+++-+|.+..+ ..+||++++++
T Consensus 172 IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~--~~~~Dri~vm~ 236 (330)
T PRK09473 172 IAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVV--AGICDKVLVMY 236 (330)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence 9989999998 5588899999999999999988876 3345677779998764 46899999886
No 149
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=4.7e-12 Score=104.00 Aligned_cols=156 Identities=13% Similarity=0.095 Sum_probs=99.8
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H 111 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~ 111 (212)
+++.+++|.........++++++...+|++++|+|+||||||||+++|+++ |...++...+. +
T Consensus 8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 87 (233)
T PRK11629 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQ 87 (233)
T ss_pred EEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhc
Confidence 455555553211012356778899999999999999999999999999987 32233321110 0
Q ss_pred -ccccCCc-------h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138 112 -RAYDVGT-------R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 112 -~~~~~~~-------~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-- 153 (212)
-.|.+.. . .....++.+|..-. -+.|+.+|-.++..+..+|+
T Consensus 88 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~ll 167 (233)
T PRK11629 88 KLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLV 167 (233)
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 0011110 0 01223344443211 12356677788888888888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++.....+.+.+.+.. .....+++.+|.+.+.. .+|+++++.
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~---~~~~~~~l~ 219 (233)
T PRK11629 168 LADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAK---RMSRQLEMR 219 (233)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH---hhCEEEEEE
Confidence 5688999999999999999998775 34567788899987652 356776653
No 150
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.28 E-value=6.9e-12 Score=103.31 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc-------c-cccccC--------Cch---
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL-------G-HRAYDV--------GTR--- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i-------~-~~~~~~--------~~~--- 119 (212)
..++++++...+|++++|+|+||||||||+++|+++ |...++...+ . +-.|.+ ...
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e 114 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVID 114 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHH
Confidence 467788999999999999999999999999999986 3223322110 0 000111 000
Q ss_pred ------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHH
Q psy17138 120 ------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKE 172 (212)
Q Consensus 120 ------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~ 172 (212)
....+.+.+|..-. -+.|+.+|..++..+..+|+ +++++.+.+++...+.+.+
T Consensus 115 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 194 (236)
T cd03267 115 SFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRN 194 (236)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 01122333343211 12356677788888889988 6689999999999999999
Q ss_pred HHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 173 EIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 173 ~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.. .....+++.+|.+.+. ..+||+++++.
T Consensus 195 ~l~~~~~~~~~tiiivsH~~~~~--~~~~d~i~~l~ 228 (236)
T cd03267 195 FLKEYNRERGTTVLLTSHYMKDI--EALARRVLVID 228 (236)
T ss_pred HHHHHHhcCCCEEEEEecCHHHH--HHhCCEEEEEe
Confidence 998875 3356788889998653 57899999885
No 151
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.27 E-value=6.1e-12 Score=103.71 Aligned_cols=142 Identities=14% Similarity=0.126 Sum_probs=97.0
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-----------ccccC-------Cchh
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-----------RAYDV-------GTRG 120 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-----------~~~~~-------~~~~ 120 (212)
..++++++...+|++++|+|+||||||||+++|+++ |...++...+.. -.|.+ ....
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA 94 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcH
Confidence 356778899999999999999999999999999986 333333221110 00111 0000
Q ss_pred ----------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138 121 ----------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ 169 (212)
Q Consensus 121 ----------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~ 169 (212)
..++++.+|..-. -+.|+.+|..++..+..+|+ +++++.+.+++.....
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (240)
T PRK09493 95 LENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174 (240)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 1122333333211 12356677788888888888 5688999999999999
Q ss_pred HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.+.++......+++.+|.+.+. ..+||+++++.
T Consensus 175 l~~~l~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~ 210 (240)
T PRK09493 175 VLKVMQDLAEEGMTMVIVTHEIGFA--EKVASRLIFID 210 (240)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 9999887753356777889998764 46899999885
No 152
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.27 E-value=5e-12 Score=115.05 Aligned_cols=154 Identities=13% Similarity=0.037 Sum_probs=105.3
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-c
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-R 112 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~ 112 (212)
.+++.+++|.. ...++++++....|++++|+|+||||||||+++|+++ |...++...+. + -
T Consensus 7 ~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 7 SMAGIGKSFGP----VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred EEeeeEEEcCC----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 35555666631 1357889999999999999999999999999999986 33333321110 0 0
Q ss_pred cccCCc-----------------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcC
Q psy17138 113 AYDVGT-----------------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFS 150 (212)
Q Consensus 113 ~~~~~~-----------------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~ 150 (212)
.|.+.. .....+++.+|.... -+.|+.+|..++..+..
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 010000 011223344443211 12357778899999999
Q ss_pred ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 151 NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+|+ +++++.+.++|.....+.+.+.++......+++-+|.+.+. ..+||++++++
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~--~~~~d~v~~l~ 219 (510)
T PRK09700 163 DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEI--RRICDRYTVMK 219 (510)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 998 66899999999999999999988763356778889998764 47899999885
No 153
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=5.8e-12 Score=106.26 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=97.5
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------cc-cccCCc-------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------HR-AYDVGT------- 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~~-~~~~~~------- 118 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .|.+..
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE 100 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc
Confidence 356778899999999999999999999999999986 33333321110 00 011110
Q ss_pred -hh---------------------HHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138 119 -RG---------------------NQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI 166 (212)
Q Consensus 119 -~~---------------------~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~ 166 (212)
.. ...+++.+|.. ... +.|+.+|-.++..+..+|+ +++++.+.++|..
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 180 (280)
T PRK13649 101 ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180 (280)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 00 11222344442 111 2356678888888889988 5688999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
...+.+.+.+.......+++.+|.+.+. ..+||+++++.
T Consensus 181 ~~~l~~~l~~~~~~~~tiiivsH~~~~~--~~~~d~i~~l~ 219 (280)
T PRK13649 181 RKELMTLFKKLHQSGMTIVLVTHLMDDV--ANYADFVYVLE 219 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccHHHH--HHhCCEEEEEE
Confidence 9999999887753356788889998653 46899998875
No 154
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=4.3e-12 Score=107.72 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=105.5
Q ss_pred eechhhhhhhhcc-ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138 49 LSSSNLRMRELGT-LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------ 110 (212)
Q Consensus 49 iss~~~r~~~~g~-~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------ 110 (212)
+.+.+++|..... ....++++++...+|++++|+|+||||||||+++|.++ |...++.-.+.
T Consensus 5 ~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (290)
T PRK13634 5 FQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLR 84 (290)
T ss_pred EEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence 4555566632110 12467889999999999999999999999999999986 43334332110
Q ss_pred cc-cccCCc-----------------------------hhHHHHHHHhCCc-c-CC------CCCccchHhHHHHhcCCh
Q psy17138 111 HR-AYDVGT-----------------------------RGNQVVRELFGED-I-AL------PDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 111 ~~-~~~~~~-----------------------------~~~~~~~~~~g~~-~-~~------~~~~~~r~~l~~~vf~~~ 152 (212)
+. .|.++. .....+++.+|.. . .+ +.|+.+|..|+..+..+|
T Consensus 85 ~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P 164 (290)
T PRK13634 85 KKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEP 164 (290)
T ss_pred hhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 00 011110 0112233445542 1 11 235667888999999999
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+ +++++.+.++|.....+.+.+.++. .....+++-+|.+.+. ..+||+++++.
T Consensus 165 ~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~--~~~~drv~~l~ 220 (290)
T PRK13634 165 EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDA--ARYADQIVVMH 220 (290)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 8 5688899999999999999998775 3356778879998764 46899998875
No 155
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.27 E-value=4e-12 Score=106.09 Aligned_cols=142 Identities=15% Similarity=0.066 Sum_probs=96.6
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccccCC-------ch---
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAYDVG-------TR--- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~~~~-------~~--- 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+. ..
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 95 (258)
T PRK13548 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEE 95 (258)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHH
Confidence 357788899999999999999999999999999986 33333322110 0 001000 00
Q ss_pred ------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcC------ChH--HHHHHHhhhhHHH
Q psy17138 120 ------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFS------NKD--EMNKLNQAIWPLI 166 (212)
Q Consensus 120 ------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~------~~~--~~~~~~~i~~p~~ 166 (212)
.....++.+|..-. -+.|+.+|-.++..+.+ +|+ +++++.+.+++..
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~ 175 (258)
T PRK13548 96 VVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175 (258)
T ss_pred HHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHH
Confidence 11223333443211 12356678888888873 666 6688999999999
Q ss_pred HHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 167 LAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 167 ~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
...+.+.+.++. .....+++.+|.+.+. ..+||+++++.
T Consensus 176 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~ 215 (258)
T PRK13548 176 QHHVLRLARQLAHERGLAVIVVLHDLNLA--ARYADRIVLLH 215 (258)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECCHHHH--HHhcCEEEEEE
Confidence 999999988775 4456788889998764 46899999885
No 156
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.27 E-value=4e-12 Score=106.49 Aligned_cols=155 Identities=13% Similarity=0.062 Sum_probs=104.7
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR- 112 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~- 112 (212)
..+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +.
T Consensus 8 l~i~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 8 LRGEQLTLGYGK----YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEECC----EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 446666666642 1367888999999999999999999999999999986 33333321110 00
Q ss_pred cccCC-----------------------------c---hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH
Q psy17138 113 AYDVG-----------------------------T---RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 113 ~~~~~-----------------------------~---~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~ 153 (212)
.|.+. . ......++.+|..-. -+.|+.+|-.++..+..+|+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 163 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETA 163 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCC
Confidence 00000 0 011223333443211 13456778889999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++.....+.+.+.++. .....+++.+|.+.+. .++||+++++.
T Consensus 164 llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~--~~~~d~i~~l~ 218 (265)
T PRK10253 164 IMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQA--CRYASHLIALR 218 (265)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 5688999999999999999998775 3356777779998653 57899998874
No 157
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.27 E-value=4.3e-12 Score=111.39 Aligned_cols=142 Identities=24% Similarity=0.174 Sum_probs=101.1
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC----ccc------------cc-cc-------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD----QLG------------HR-AY------- 114 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D----~i~------------~~-~~------- 114 (212)
..+++++++..+|++++|+|+||||||||+++|+++ |...++.. .+. +. .|
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 456778999999999999999999999999999987 44455541 110 00 01
Q ss_pred cCCchh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhH
Q psy17138 115 DVGTRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWP 164 (212)
Q Consensus 115 ~~~~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p 164 (212)
.+.... ....++.+|..-+ -+.|+.+|..|+..+..+|+ +++++.+.++|
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~ 197 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDP 197 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 111111 1123334443221 13467778889999999998 56888999999
Q ss_pred HHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 165 LILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 165 ~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..++.+.+.+.++. .....+++-+|.+.++ .++||+++++.
T Consensus 198 ~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~--~~l~DrI~vl~ 239 (382)
T TIGR03415 198 LIRTQLQDELLELQAKLNKTIIFVSHDLDEA--LKIGNRIAIME 239 (382)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 99999999998876 3356788889999875 47899998875
No 158
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.27 E-value=6.9e-12 Score=101.25 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=75.3
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH-cCCe---eeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET-LGAG---LINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVF 149 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~---vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf 149 (212)
.++.+|||.|+|||||||+++.|.. ++.. +++-|. |...... .-....+...++....+|... ++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~-----YYk~~~~--~~~~~~~~~n~d~p~A~D~dL----l~ 74 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDD-----YYKDQSH--LPFEERNKINYDHPEAFDLDL----LI 74 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccc-----cccchhh--cCHhhcCCcCccChhhhcHHH----HH
Confidence 4579999999999999999999985 5532 444443 3222110 001111211222222344422 22
Q ss_pred CChHHHHHHHhhhhHHHHHHHHHHHHhh-c-CCCcEEEEEeccccc-cccccccCeEEEEEeCCCC
Q psy17138 150 SNKDEMNKLNQAIWPLILAQVKEEIARL-S-ESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQE 212 (212)
Q Consensus 150 ~~~~~~~~~~~i~~p~~~~~~~~~i~~~-~-~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~~ 212 (212)
++-..+..-..+.-|.+......+..+. . .+.++|++||-+++. ..|++++|..++|++|.|+
T Consensus 75 ~~L~~L~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~ 140 (218)
T COG0572 75 EHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADV 140 (218)
T ss_pred HHHHHHHcCCcccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccH
Confidence 2222222223345566655554443211 1 567899999999985 4799999999999999763
No 159
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=4.1e-12 Score=108.63 Aligned_cols=157 Identities=17% Similarity=0.093 Sum_probs=105.0
Q ss_pred eechhhhhhhhcc-ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc-------------
Q psy17138 49 LSSSNLRMRELGT-LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------- 109 (212)
Q Consensus 49 iss~~~r~~~~g~-~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------- 109 (212)
+++.+++|..... ....++++++...+|.+++|+|+||||||||+++|+++ |...++...+
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (305)
T PRK13651 5 VKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVL 84 (305)
T ss_pred EEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccc
Confidence 4555666632211 12467889999999999999999999999999999987 4333331100
Q ss_pred -------------------ccc-cccCCc--------h---------------------hHHHHHHHhCCc--cCC----
Q psy17138 110 -------------------GHR-AYDVGT--------R---------------------GNQVVRELFGED--IAL---- 134 (212)
Q Consensus 110 -------------------~~~-~~~~~~--------~---------------------~~~~~~~~~g~~--~~~---- 134 (212)
.+. .|.++. . .....++.+|.. ..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 164 (305)
T PRK13651 85 EKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPF 164 (305)
T ss_pred cccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChh
Confidence 000 011110 0 112333444542 111
Q ss_pred --CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 135 --PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 135 --~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.|+.+|..++..+..+|+ +++++.+.++|.....+.+.+.++......+++-+|.+.+. ..+||+++++.
T Consensus 165 ~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~--~~~adrv~vl~ 239 (305)
T PRK13651 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNV--LEWTKRTIFFK 239 (305)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHH--HHhCCEEEEEE
Confidence 2356778889999999998 56889999999999999999987753356777779998653 47899999885
No 160
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.26 E-value=5.8e-12 Score=102.70 Aligned_cols=141 Identities=15% Similarity=0.199 Sum_probs=95.8
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----cccccCC-------ch--------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----HRAYDVG-------TR-------- 119 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----~~~~~~~-------~~-------- 119 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+. .-.|.+. ..
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~ 94 (223)
T TIGR03740 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVH 94 (223)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHH
Confidence 56778889999999999999999999999999986 33333221110 0001110 01
Q ss_pred ---------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCC
Q psy17138 120 ---------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESH 181 (212)
Q Consensus 120 ---------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~ 181 (212)
....+.+.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.+++...+.+.+.+.+.....
T Consensus 95 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~ 174 (223)
T TIGR03740 95 TTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQG 174 (223)
T ss_pred HHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCC
Confidence 11223344443211 12356667788888888888 5688899999999999999998775334
Q ss_pred cEEEEEeccccccccccccCeEEEEE
Q psy17138 182 KVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 182 ~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+++.+|.+.+. ..+||+++++.
T Consensus 175 ~tiii~sH~~~~~--~~~~d~i~~l~ 198 (223)
T TIGR03740 175 ITVILSSHILSEV--QQLADHIGIIS 198 (223)
T ss_pred CEEEEEcCCHHHH--HHhcCEEEEEe
Confidence 5778889988663 46899998874
No 161
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.26 E-value=5.9e-12 Score=109.68 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=96.6
Q ss_pred CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------cc-ccc-------CCch---
Q psy17138 68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------HR-AYD-------VGTR--- 119 (212)
Q Consensus 68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~~-~~~-------~~~~--- 119 (212)
++++...+|++++|+|+||||||||+++|+++ |...++...+. +. .|. +...
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 57888899999999999999999999999987 33333321110 00 011 1100
Q ss_pred ------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc
Q psy17138 120 ------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS 178 (212)
Q Consensus 120 ------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~ 178 (212)
....+++.+|..-+ -+.|+.+|-.|+..+..+|+ +++++.+.+++..++.+.+.++++.
T Consensus 96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~ 175 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLA 175 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 12233444554311 12367778899999999998 6688999999999999999998775
Q ss_pred -CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 179 -ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 179 -~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.....+++.+|.+.+. ..+||+++++.
T Consensus 176 ~~~g~tii~vTHd~~~~--~~~~d~i~~l~ 203 (352)
T PRK11144 176 REINIPILYVSHSLDEI--LRLADRVVVLE 203 (352)
T ss_pred HhcCCeEEEEecCHHHH--HHhCCEEEEEe
Confidence 3345777779998764 57899998875
No 162
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.26 E-value=1e-11 Score=100.93 Aligned_cols=153 Identities=18% Similarity=0.160 Sum_probs=100.9
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAY 114 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~ 114 (212)
+++.+++|.. .....++++++...+|.+++|+|+||||||||+++|.++ |...++...+. . -.|
T Consensus 5 ~~~l~~~~~~--~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 5 FRNVSFSYPN--QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEcCC--CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 4555555531 112467888899999999999999999999999999986 33333321110 0 001
Q ss_pred cCC------ch---------------hHHHHHHHhCCcc------------------CCCCCccchHhHHHHhcCChH--
Q psy17138 115 DVG------TR---------------GNQVVRELFGEDI------------------ALPDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 115 ~~~------~~---------------~~~~~~~~~g~~~------------------~~~~~~~~r~~l~~~vf~~~~-- 153 (212)
.+. .. ........++..- .-+.|+.+|-.++..+..+|+
T Consensus 83 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ll 162 (220)
T cd03245 83 VPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPIL 162 (220)
T ss_pred eCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence 000 00 1112222222210 113456678888888888888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++.....+.+.+.+...+ ..+++.+|.+.. + .+||+++++.
T Consensus 163 llDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~--~-~~~d~v~~l~ 212 (220)
T cd03245 163 LLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL--L-DLVDRIIVMD 212 (220)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH--H-HhCCEEEEEe
Confidence 568899999999999999999887543 677888999864 2 5899998875
No 163
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=5.4e-12 Score=106.89 Aligned_cols=157 Identities=14% Similarity=0.138 Sum_probs=104.6
Q ss_pred eechhhhhhhhc-cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138 49 LSSSNLRMRELG-TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------ 110 (212)
Q Consensus 49 iss~~~r~~~~g-~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------ 110 (212)
+++.+++|.... .....++++++...+|++++|+|+||||||||+++|+++ |...++.-.+.
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (286)
T PRK13646 5 FDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVR 84 (286)
T ss_pred EEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence 455555653211 012467889999999999999999999999999999987 43344331110
Q ss_pred cc-cccCCc--------h---------------------hHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCCh
Q psy17138 111 HR-AYDVGT--------R---------------------GNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 111 ~~-~~~~~~--------~---------------------~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~ 152 (212)
+. .|.+.. . ....+++.+|.. ..+ +.|+.+|..++..+..+|
T Consensus 85 ~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p 164 (286)
T PRK13646 85 KRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNP 164 (286)
T ss_pred hheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 00 011110 0 011233344432 111 235667888888888998
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+ +++++.+.++|.....+.+.+.++. .....+++.+|.+.+. ..+||++++++
T Consensus 165 ~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~--~~~~dri~~l~ 220 (286)
T PRK13646 165 DIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEV--ARYADEVIVMK 220 (286)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 8 5688899999999999999998875 3456777779998764 46899998875
No 164
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.26 E-value=8.1e-12 Score=101.86 Aligned_cols=142 Identities=13% Similarity=0.021 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC----ccc------------c-ccccCCc---
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD----QLG------------H-RAYDVGT--- 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D----~i~------------~-~~~~~~~--- 118 (212)
..++++++...+|++++|+|+||||||||+++|+++ |...++.+ .+. + -.|.+..
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence 457788899999999999999999999999999987 44445421 110 0 0111110
Q ss_pred -------------------------hhHHHHHHHhCCcc-C-C------CCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138 119 -------------------------RGNQVVRELFGEDI-A-L------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIW 163 (212)
Q Consensus 119 -------------------------~~~~~~~~~~g~~~-~-~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~ 163 (212)
.....+++.+|... . + +.|+.+|..++..+..+|+ +++++.+.++
T Consensus 102 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 181 (224)
T TIGR02324 102 IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181 (224)
T ss_pred CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 00112233444321 1 1 2345677788888999988 5688999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 164 PLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 164 p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+...+.+.+.+.+.......+++.+|.+... .++||+++.+.
T Consensus 182 ~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~--~~~~d~i~~~~ 223 (224)
T TIGR02324 182 AANRQVVVELIAEAKARGAALIGIFHDEEVR--ELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhcceeEecC
Confidence 9999999999988753356777879986553 46899988764
No 165
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=5.1e-12 Score=103.97 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=99.5
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-cc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RA 113 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~ 113 (212)
+.+.+++|.. ...++++++...+|++++|+|+||||||||+++|+++ |...++...+. + -.
T Consensus 8 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 8 FDKVSAHYGK----IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEeEEEeeCC----ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 4555555531 2367778899999999999999999999999999986 32233221110 0 00
Q ss_pred ccCC-------chh-------------------HHHHHHHhC-Cc-cC------CCCCccchHhHHHHhcCChH--HHHH
Q psy17138 114 YDVG-------TRG-------------------NQVVRELFG-ED-IA------LPDGSIDRKKLGAIVFSNKD--EMNK 157 (212)
Q Consensus 114 ~~~~-------~~~-------------------~~~~~~~~g-~~-~~------~~~~~~~r~~l~~~vf~~~~--~~~~ 157 (212)
|.+. ... .....+.++ .. .. -+.|+.+|-.++..+..+|+ ++++
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDE 163 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 1010 000 111122221 11 00 13356677788888888888 5688
Q ss_pred HHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 158 LNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 158 ~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.+++.....+.+.+.+.......+++.+|.+.+. .++||+++++.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~ 211 (237)
T PRK11614 164 PSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQA--LKLADRGYVLE 211 (237)
T ss_pred ccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH--HhhCCEEEEEe
Confidence 8999999999999999887753356777779988653 47899999875
No 166
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.26 E-value=9.7e-12 Score=101.68 Aligned_cols=153 Identities=16% Similarity=0.076 Sum_probs=102.7
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-cc
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RA 113 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~ 113 (212)
.+.+.++.|. + ...++++++...+|++++|+|+||||||||+++|+++ |...++...+. . -.
T Consensus 9 ~~~~l~~~~~--~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 9 QLQNVGYLAG--D--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred EEeccEEeeC--C--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4555555553 1 2467888999999999999999999999999999986 33333321110 0 00
Q ss_pred ccCC-------------------------chhHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHH
Q psy17138 114 YDVG-------------------------TRGNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKL 158 (212)
Q Consensus 114 ~~~~-------------------------~~~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~ 158 (212)
|.+. ......+++.+|.. ..+ +.|+.+|-.++..+..+|+ +++++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEI 164 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 0000 00122344445542 111 2356677888899999998 56889
Q ss_pred HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+++...+.+.+.+.+.. .....+++.+|.+.+. ..||++++++
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~---~~~d~i~~l~ 211 (225)
T PRK10247 165 TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEI---NHADKVITLQ 211 (225)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHH---HhCCEEEEEe
Confidence 99999999999999888765 3345677778988764 3699999985
No 167
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=4.5e-12 Score=106.18 Aligned_cols=155 Identities=23% Similarity=0.214 Sum_probs=104.2
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-c
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-R 112 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~ 112 (212)
..+++.++++. + ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -
T Consensus 12 l~i~~l~~~~~--~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 12 FALRNVSFRVP--G--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred EEEeeEEEEEC--C--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 35666666663 1 1467888999999999999999999999999999986 33333331110 0 0
Q ss_pred cccC-------Cch-------------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH
Q psy17138 113 AYDV-------GTR-------------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 113 ~~~~-------~~~-------------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~ 153 (212)
.|.+ ... ......+.+|..-. -+.|+.+|..++..+..+|+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 167 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSR 167 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 0100 000 11222333333211 13456678888888889988
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++...+.+.+.+.++. .....+++.+|.+.+. .++||+++++.
T Consensus 168 lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i--~~~~d~i~~l~ 222 (265)
T PRK10575 168 CLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMA--ARYCDYLVALR 222 (265)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 5688999999999999999998775 3356777879988653 47899999885
No 168
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.25 E-value=8.5e-12 Score=100.80 Aligned_cols=129 Identities=19% Similarity=0.163 Sum_probs=65.0
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc-C---CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHh
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL-G---AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIV 148 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-g---~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~v 148 (212)
+++|.++||+|+|||||||+++.|.++ . ..++..|.... +... . ......+. .+.....++...+...+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~----~~~~-~-~~~~~~~~-~~~~~~~~~~~~l~~~l 75 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYK----DQSH-L-EMAERKKT-NFDHPDAFDNDLLYEHL 75 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccccc----Chhh-C-CHHHhcCC-CCCCccHhHHHHHHHHH
Confidence 567999999999999999999999975 2 33444443211 0000 0 00001110 11111111211111100
Q ss_pred cCChHHHHHHHhhhhHHHHHHHHHHHHhh-c-CCCcEEEEEecccc-ccccccccCeEEEEEeCCCC
Q psy17138 149 FSNKDEMNKLNQAIWPLILAQVKEEIARL-S-ESHKVIVIEAAVLL-SAKWQDQVHEIWVTFIPEQE 212 (212)
Q Consensus 149 f~~~~~~~~~~~i~~p~~~~~~~~~i~~~-~-~~~~~vvie~~~l~-e~~~~~~~d~v~~v~~~~~~ 212 (212)
..+.....+..|.+.........+. . ....++++|+.+++ +..+.++||.+|+|++|.++
T Consensus 76 ----~~l~~g~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~ 138 (207)
T TIGR00235 76 ----KNLKNGSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDI 138 (207)
T ss_pred ----HHHHCCCCEecccceeecCCCCCceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhH
Confidence 0000011122233322222211111 1 34679999988775 56688899999999999763
No 169
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=6e-12 Score=103.30 Aligned_cols=138 Identities=13% Similarity=0.120 Sum_probs=94.7
Q ss_pred CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------c-ccccCC-------ch---------
Q psy17138 68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------H-RAYDVG-------TR--------- 119 (212)
Q Consensus 68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~-~~~~~~-------~~--------- 119 (212)
++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+. ..
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 68899999999999999999999999999986 43333322110 0 001010 00
Q ss_pred ------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc
Q psy17138 120 ------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS 178 (212)
Q Consensus 120 ------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~ 178 (212)
....+++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.+++.....+.+.+.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~ 176 (232)
T PRK10771 97 NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC 176 (232)
T ss_pred ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 01222333443211 13456678888888888888 5688999999999999999888765
Q ss_pred -CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 179 -ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 179 -~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.....+++.+|.+.+. ..+||+++++.
T Consensus 177 ~~~~~tiii~sH~~~~~--~~~~d~i~~l~ 204 (232)
T PRK10771 177 QERQLTLLMVSHSLEDA--ARIAPRSLVVA 204 (232)
T ss_pred HhcCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence 3356778889998764 46899999885
No 170
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.25 E-value=4.1e-12 Score=114.47 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=111.3
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC---------CeeeeC-Ccc-------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG---------AGLINC-DQL------- 109 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg---------~~vi~~-D~i------- 109 (212)
.++++.++.|...+....++++++++..+|+++||+|.|||||||+++.|.++. -..++. |..
T Consensus 6 L~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~ 85 (539)
T COG1123 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREM 85 (539)
T ss_pred EEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHH
Confidence 357788888877776778999999999999999999999999999999999862 122332 111
Q ss_pred ----cc----------ccccCCch-------------------hHHH---HHHHhCCcc------C---CCCCccchHhH
Q psy17138 110 ----GH----------RAYDVGTR-------------------GNQV---VRELFGEDI------A---LPDGSIDRKKL 144 (212)
Q Consensus 110 ----~~----------~~~~~~~~-------------------~~~~---~~~~~g~~~------~---~~~~~~~r~~l 144 (212)
++ ..+.|... .... +.+..|.+- + -+.|+.+|..+
T Consensus 86 r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~i 165 (539)
T COG1123 86 RKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMI 165 (539)
T ss_pred HHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHH
Confidence 00 01111100 1111 111112110 0 14678899999
Q ss_pred HHHhcCChHH--HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 145 GAIVFSNKDE--MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 145 ~~~vf~~~~~--~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
+..+..+|.+ .++++..+++....++.+.++++. ...-.+++-+|++-- ...+||+++++..
T Consensus 166 AmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V--va~~aDrv~Vm~~ 230 (539)
T COG1123 166 AMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV--VAELADRVVVMYK 230 (539)
T ss_pred HHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH--HHHhcCeEEEEEC
Confidence 9999999994 478999999999999999998887 344455555898854 2479999999874
No 171
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.25 E-value=1.3e-11 Score=103.60 Aligned_cols=142 Identities=18% Similarity=0.114 Sum_probs=98.3
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccccCCc-----------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAYDVGT----------- 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~~~~~----------- 118 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+..
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv 106 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI 106 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence 467888999999999999999999999999999987 33333321110 0 0010000
Q ss_pred --------------------hhHHHHHHHhCCc-c-C------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 119 --------------------RGNQVVRELFGED-I-A------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 119 --------------------~~~~~~~~~~g~~-~-~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
......++.+|.. . . -+.|+.+|-.++..+..+|. +++++.+.++|....
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 186 (267)
T PRK15112 107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRS 186 (267)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHH
Confidence 0112234444541 1 1 12356678888888889988 668899999999999
Q ss_pred HHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+.+.. .....+++.+|.+.+. ..+||+++++.
T Consensus 187 ~l~~~l~~~~~~~g~tviivsH~~~~~--~~~~d~i~~l~ 224 (267)
T PRK15112 187 QLINLMLELQEKQGISYIYVTQHLGMM--KHISDQVLVMH 224 (267)
T ss_pred HHHHHHHHHHHHcCcEEEEEeCCHHHH--HHhcCEEEEEE
Confidence 9999998775 3356777779988663 57899999885
No 172
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=1.3e-11 Score=99.78 Aligned_cols=140 Identities=16% Similarity=0.191 Sum_probs=95.9
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------c-ccccCC-------chh---
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------H-RAYDVG-------TRG--- 120 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~-~~~~~~-------~~~--- 120 (212)
..++++++...+| +++|+|+||||||||+++|+++ |...++...+. . -.|.+. ...
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREF 92 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHH
Confidence 3567788888889 9999999999999999999986 33333322110 0 001110 000
Q ss_pred ------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHH
Q psy17138 121 ------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEE 173 (212)
Q Consensus 121 ------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~ 173 (212)
.....+.+|..-. -+.|+.+|..++..+..+|+ +++++.+.+++.....+.+.
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 172 (211)
T cd03264 93 LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNL 172 (211)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 1122333343211 13456678888888889998 67889999999999999999
Q ss_pred HHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 174 IARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 174 i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++...+ ..+++-+|.+.+. ..+||++++++
T Consensus 173 l~~~~~~-~tii~vsH~~~~~--~~~~d~i~~l~ 203 (211)
T cd03264 173 LSELGED-RIVILSTHIVEDV--ESLCNQVAVLN 203 (211)
T ss_pred HHHHhCC-CEEEEEcCCHHHH--HHhCCEEEEEE
Confidence 9887643 6777879988763 46899999885
No 173
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=8.7e-12 Score=105.14 Aligned_cols=142 Identities=13% Similarity=0.191 Sum_probs=98.4
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------c-cccC--------Cch--
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------R-AYDV--------GTR-- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~-~~~~--------~~~-- 119 (212)
..++++++...+|++++|+|+||||||||+++|+++ |...++...+.. . .|.+ ...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVE 97 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHH
Confidence 367888999999999999999999999999999987 433343221110 0 0100 000
Q ss_pred -------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHH
Q psy17138 120 -------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVK 171 (212)
Q Consensus 120 -------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~ 171 (212)
......+.+|..-. -+.|+.+|..++..+..+|+ +++++.+.+++...+.+.
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~ 177 (277)
T PRK13652 98 QDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177 (277)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 01222333333211 13467778889999999998 568899999999999999
Q ss_pred HHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 172 EEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 172 ~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.+.. .....+++.+|.+.+. .++||+++++.
T Consensus 178 ~~l~~l~~~~g~tvli~tH~~~~~--~~~~drv~~l~ 212 (277)
T PRK13652 178 DFLNDLPETYGMTVIFSTHQLDLV--PEMADYIYVMD 212 (277)
T ss_pred HHHHHHHHhcCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 9998775 3356788889998764 46899999885
No 174
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.25 E-value=9.3e-12 Score=103.77 Aligned_cols=154 Identities=16% Similarity=0.075 Sum_probs=104.1
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc-----cc-------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ-----LG------- 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~-----i~------- 110 (212)
++.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++... +.
T Consensus 8 ~~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 8 SVRGLTKLYGP----RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred EEeeeEEEcCC----ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 35555565532 1356778899999999999999999999999999986 433333322 10
Q ss_pred -----c-ccccCCc-------------------------------hhHHHHHHHhCCc--cCC------CCCccchHhHH
Q psy17138 111 -----H-RAYDVGT-------------------------------RGNQVVRELFGED--IAL------PDGSIDRKKLG 145 (212)
Q Consensus 111 -----~-~~~~~~~-------------------------------~~~~~~~~~~g~~--~~~------~~~~~~r~~l~ 145 (212)
+ -.|.+.. .....+++.+|.. ..+ +.|+.+|-.++
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la 163 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA 163 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence 0 0011100 0011233445542 111 23566788899
Q ss_pred HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+..+|+ +++++.+.+++...+.+.+.+.++. .....+++.+|.+.+. ..+||+++++.
T Consensus 164 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~--~~~~d~i~~l~ 226 (258)
T PRK11701 164 RNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA--RLLAHRLLVMK 226 (258)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH--HHhcCEEEEEE
Confidence 88999998 5688999999999999999988765 3356777879998764 36899998875
No 175
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.24 E-value=1.5e-11 Score=112.07 Aligned_cols=141 Identities=12% Similarity=0.130 Sum_probs=99.5
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------cccccCCc----------h
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------HRAYDVGT----------R 119 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~~~~~~~~----------~ 119 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +-.|.+.. .
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 46788999999999999999999999999999986 33333322110 00111100 0
Q ss_pred ------------------------hHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138 120 ------------------------GNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL 165 (212)
Q Consensus 120 ------------------------~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~ 165 (212)
....++..+|.. ..+ +.|+.+|-.|+..+..+|+ +++++.+.+++.
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 012233445542 111 3467778899999999998 568999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 166 ILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+.+.+.+.++......+++-+|.+.+. .++||+++++.
T Consensus 438 ~~~~l~~~l~~l~~~g~tiIivsHd~~~i--~~~~d~i~~l~ 477 (510)
T PRK15439 438 ARNDIYQLIRSIAAQNVAVLFISSDLEEI--EQMADRVLVMH 477 (510)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence 99999999988763356777779999774 57899999885
No 176
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=1.1e-11 Score=102.39 Aligned_cols=142 Identities=18% Similarity=0.131 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------------cc-ccccCC------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------------GH-RAYDVG------ 117 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------------~~-~~~~~~------ 117 (212)
..++++++...+|++++|+|+||||||||+++|+++ |...++...+ .+ -.|.+.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP 95 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence 356778899999999999999999999999999986 3333332211 00 011111
Q ss_pred -chh----------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138 118 -TRG----------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL 165 (212)
Q Consensus 118 -~~~----------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~ 165 (212)
... ....++.+|.... -+.|+.+|..++..+..+|+ +++++.+.+++.
T Consensus 96 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~ 175 (242)
T PRK11124 96 HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175 (242)
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHH
Confidence 011 1112233333211 12356677788888888888 568899999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 166 ILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
....+.+.+.+.......+++.+|.+.+. .++||+++++.
T Consensus 176 ~~~~l~~~l~~~~~~~~tii~~sh~~~~~--~~~~d~i~~l~ 215 (242)
T PRK11124 176 ITAQIVSIIRELAETGITQVIVTHEVEVA--RKTASRVVYME 215 (242)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence 99999999987753356788889998763 46899998875
No 177
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.1e-11 Score=104.12 Aligned_cols=154 Identities=16% Similarity=0.075 Sum_probs=102.2
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG------ 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~------ 110 (212)
..+.+..++|.. ...++++++...+|++++|+|+||||||||+++|+++.. ..++...+.
T Consensus 14 l~i~nl~~~~~~----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 14 ISLQNVTISYGT----FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred EEEEeEEEEECC----EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 345566666532 135788899999999999999999999999999998621 223221110
Q ss_pred ----c-ccccCCc------h--------------------hHHHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138 111 ----H-RAYDVGT------R--------------------GNQVVRELFGED-----IA------LPDGSIDRKKLGAIV 148 (212)
Q Consensus 111 ----~-~~~~~~~------~--------------------~~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v 148 (212)
+ -.|.+.. . .....++.++.. .. -+.|+.+|-.++..+
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral 169 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTI 169 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHH
Confidence 0 0111110 0 011122333321 01 123566777888888
Q ss_pred cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+|+ +++++.+.+++.....+.+.+.+... ...+++.+|.+.+. .++||++++++
T Consensus 170 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~--~~~~d~i~~l~ 227 (269)
T PRK14259 170 AIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQA--VRVSDMTAFFN 227 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH--HHhcCEEEEEe
Confidence 89988 66889999999999999999987753 35777879988664 57999999987
No 178
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=6e-12 Score=105.98 Aligned_cols=141 Identities=23% Similarity=0.188 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-cccc--------CCch-
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RAYD--------VGTR- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~~~--------~~~~- 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|. ....
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 95 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTV 95 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchH
Confidence 367888999999999999999999999999999987 33333322110 0 0000 0000
Q ss_pred --------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHH
Q psy17138 120 --------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQV 170 (212)
Q Consensus 120 --------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~ 170 (212)
....+++.+|...+ -+.|+.+|..++..+..+|+ +++++.+.++|.....+
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 175 (274)
T PRK13644 96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 01122333443211 12366778889999999998 56889999999999999
Q ss_pred HHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 171 KEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 171 ~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.++......+++.+|.+.+. ..||+++++.
T Consensus 176 ~~~l~~l~~~g~til~~tH~~~~~---~~~d~v~~l~ 209 (274)
T PRK13644 176 LERIKKLHEKGKTIVYITHNLEEL---HDADRIIVMD 209 (274)
T ss_pred HHHHHHHHhCCCEEEEEecCHHHH---hhCCEEEEEE
Confidence 999987754456788889999774 3599999885
No 179
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.24 E-value=8.7e-12 Score=108.71 Aligned_cols=138 Identities=21% Similarity=0.168 Sum_probs=96.0
Q ss_pred CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------ccc-cc-------CCchh--
Q psy17138 68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------HRA-YD-------VGTRG-- 120 (212)
Q Consensus 68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~~~-~~-------~~~~~-- 120 (212)
++++...+|++++|+|+||||||||+++|+++ |...++...+. +.+ |. +....
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 57788899999999999999999999999987 33333322110 000 11 11000
Q ss_pred -----------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138 121 -----------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI 174 (212)
Q Consensus 121 -----------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i 174 (212)
...+++.+|..-+ -+.|+.+|-.++..+..+|+ +++++.+.+++..++.+.+.+
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L 174 (354)
T TIGR02142 95 NLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL 174 (354)
T ss_pred HHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 1233344443211 13467778899999999998 568899999999999999999
Q ss_pred Hhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 175 ARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 175 ~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++. .....+++.+|.+.+. ..+||+++++.
T Consensus 175 ~~l~~~~g~tiiivtH~~~~~--~~~~d~i~~l~ 206 (354)
T TIGR02142 175 ERLHAEFGIPILYVSHSLQEV--LRLADRVVVLE 206 (354)
T ss_pred HHHHHhcCCEEEEEecCHHHH--HHhCCEEEEEe
Confidence 8875 3356777879998764 47899998875
No 180
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.24 E-value=5.7e-12 Score=117.34 Aligned_cols=159 Identities=13% Similarity=0.049 Sum_probs=109.8
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC--------------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-------------- 107 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-------------- 107 (212)
.++++.+++|...+.....++++++...+|.++||+|+||||||||+++|+++ |...++..
T Consensus 13 l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~ 92 (623)
T PRK10261 13 LAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSE 92 (623)
T ss_pred EEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccccc
Confidence 45777777775322233578889999999999999999999999999999987 22222210
Q ss_pred ------------ccc---ccc---ccCCch----------------------hHHHHHHHhCCcc----CC------CCC
Q psy17138 108 ------------QLG---HRA---YDVGTR----------------------GNQVVRELFGEDI----AL------PDG 137 (212)
Q Consensus 108 ------------~i~---~~~---~~~~~~----------------------~~~~~~~~~g~~~----~~------~~~ 137 (212)
.++ .+. +.+... ....+++.+|... ++ +.|
T Consensus 93 ~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgG 172 (623)
T PRK10261 93 QSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGG 172 (623)
T ss_pred CCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHH
Confidence 010 000 011100 0112344455421 11 346
Q ss_pred ccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 138 SIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 138 ~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+|..|+..+..+|+ +++++.+.++|.....+.+.++++. .....+++-+|.+.+. ..+||++++++
T Consensus 173 q~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~--~~~adri~vl~ 243 (623)
T PRK10261 173 MRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVV--AEIADRVLVMY 243 (623)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH--HHhCCEEEEee
Confidence 7788899999999998 5689999999999999999998875 3355777779998764 47999999986
No 181
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=1.1e-11 Score=101.73 Aligned_cols=153 Identities=14% Similarity=0.050 Sum_probs=102.4
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------cc-ccc-
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HR-AYD- 115 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~-~~~- 115 (212)
+++.++++.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .|.
T Consensus 3 ~~~l~~~~~~----~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (232)
T cd03300 3 LENVSKFYGG----FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVF 78 (232)
T ss_pred EEeEEEEeCC----eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEe
Confidence 4455555531 1467778899999999999999999999999999986 43334322110 00 000
Q ss_pred ------CCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHH
Q psy17138 116 ------VGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLN 159 (212)
Q Consensus 116 ------~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~ 159 (212)
++.. ....+++.+|..-+ -+.|+.+|-.++..+..+|+ +++++.
T Consensus 79 q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (232)
T cd03300 79 QNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL 158 (232)
T ss_pred cccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 0000 11223334444311 12356677788889999998 568899
Q ss_pred hhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 160 QAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 160 ~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+++...+.+.+.+.++. .....+++.+|.+.+. ..+||++++++
T Consensus 159 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~--~~~~d~i~~l~ 205 (232)
T cd03300 159 GALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA--LTMSDRIAVMN 205 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence 9999999999999988775 3356777779988663 46899999875
No 182
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=7.8e-12 Score=106.00 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=104.7
Q ss_pred cceechhhhhhhhc-cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc-----------
Q psy17138 47 DKLSSSNLRMRELG-TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL----------- 109 (212)
Q Consensus 47 ~~iss~~~r~~~~g-~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i----------- 109 (212)
..+.+.+++|.... .....++++++...+|.+++|+|+||||||||+++|+++ |...++...+
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 86 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHH
Confidence 34666666663211 012367788899999999999999999999999999986 3333332111
Q ss_pred --ccc-cccCCc--------h---------------------hHHHHHHHhCCc--cCC------CCCccchHhHHHHhc
Q psy17138 110 --GHR-AYDVGT--------R---------------------GNQVVRELFGED--IAL------PDGSIDRKKLGAIVF 149 (212)
Q Consensus 110 --~~~-~~~~~~--------~---------------------~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf 149 (212)
.+. .|.+.. . ....+.+.++.. ..+ +.|+.+|-.++..+.
T Consensus 87 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~ 166 (289)
T PRK13645 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIA 166 (289)
T ss_pred HHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 000 011110 0 011223334431 111 236677888888888
Q ss_pred CChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 150 SNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 150 ~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+|+ +++++.+.+++...+.+.+.+.+.. .....+++.+|.+.+. ..+||+++++.
T Consensus 167 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~--~~~~d~i~~l~ 225 (289)
T PRK13645 167 MDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQV--LRIADEVIVMH 225 (289)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 9988 5688999999999999999888765 3356788889998653 57899998885
No 183
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.23 E-value=1.4e-11 Score=102.23 Aligned_cols=141 Identities=21% Similarity=0.243 Sum_probs=95.5
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccc--------c-ccccCCc-------h-----
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLG--------H-RAYDVGT-------R----- 119 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~--------~-~~~~~~~-------~----- 119 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+.. .
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl 90 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence 56778899999999999999999999999999986 22233322110 0 0011100 0
Q ss_pred ---------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcC-------ChH--HHHHHHhhhhHHHHH
Q psy17138 120 ---------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFS-------NKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 120 ---------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~-------~~~--~~~~~~~i~~p~~~~ 168 (212)
....+++.+|..-. -+.|+.+|..++..+.+ +|+ +++++.+.+++....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~ 170 (248)
T PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA 170 (248)
T ss_pred HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHH
Confidence 11233344443211 12356677788888776 445 668899999999999
Q ss_pred HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+.+.......+++.+|.+.+. ..+||+++++.
T Consensus 171 ~l~~~L~~~~~~~~tvi~~sH~~~~~--~~~~d~i~~l~ 207 (248)
T PRK03695 171 ALDRLLSELCQQGIAVVMSSHDLNHT--LRHADRVWLLK 207 (248)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 99999887753456788889998764 57899999885
No 184
>KOG0055|consensus
Probab=99.23 E-value=8.8e-12 Score=120.29 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=106.2
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------ 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------ 110 (212)
...++.++|+... ...-++++++..+.|..++|+|+|||||||+.++|.++ |...+|+.++.
T Consensus 352 ef~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ig 430 (1228)
T KOG0055|consen 352 EFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIG 430 (1228)
T ss_pred EEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcC
Confidence 3455555554332 34566778999999999999999999999999999986 66667765541
Q ss_pred ---cc----------c--ccCCchhHHHHH------------HHh--------CCcc-CCCCCccchHhHHHHhcCChH-
Q psy17138 111 ---HR----------A--YDVGTRGNQVVR------------ELF--------GEDI-ALPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 111 ---~~----------~--~~~~~~~~~~~~------------~~~--------g~~~-~~~~~~~~r~~l~~~vf~~~~- 153 (212)
++ + |.......+++. ..+ |+.- .-+.|+.+|-.+++.+..||.
T Consensus 431 lV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~I 510 (1228)
T KOG0055|consen 431 LVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKI 510 (1228)
T ss_pred eeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCE
Confidence 11 0 111110111111 111 1110 124578889999999999999
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.+..+++.-.+.+++.+.++..+..++++ +|-|-.- ++ +|+++++.
T Consensus 511 LLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivV-aHRLStI--rn-aD~I~v~~ 561 (1228)
T KOG0055|consen 511 LLLDEATSALDAESERVVQEALDKASKGRTTIVV-AHRLSTI--RN-ADKIAVME 561 (1228)
T ss_pred EEecCcccccCHHHHHHHHHHHHHhhcCCeEEEE-eeehhhh--hc-cCEEEEEE
Confidence 678999999999999999999888655545555 8988763 34 89999875
No 185
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.23 E-value=1.1e-11 Score=100.94 Aligned_cols=141 Identities=18% Similarity=0.082 Sum_probs=96.4
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------c-ccccCC-------ch
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------H-RAYDVG-------TR 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~-~~~~~~-------~~ 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+. ..
T Consensus 19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (220)
T TIGR02982 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLT 98 (220)
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCC
Confidence 356778899999999999999999999999999986 32333322110 0 001000 00
Q ss_pred ----------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 120 ----------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 120 ----------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
.....++.+|..-. -+.|+.+|-.++..+.++|+ +++++...+++....
T Consensus 99 ~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~ 178 (220)
T TIGR02982 99 ARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGR 178 (220)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 12233334443211 12356677888889999988 568889999999999
Q ss_pred HHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+++.. .....+++.+|.+.. .++||++++++
T Consensus 179 ~l~~~l~~~~~~~~~tii~~sh~~~~---~~~~d~v~~l~ 215 (220)
T TIGR02982 179 DVVELMQKLAREQGCTILIVTHDNRI---LDVADRIVHME 215 (220)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHH---HhhCCEEEEEE
Confidence 9999988765 345778887999742 46899999885
No 186
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.23 E-value=2.3e-11 Score=100.30 Aligned_cols=142 Identities=18% Similarity=0.146 Sum_probs=95.2
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-------CCeeeeCCccc--------cc--cccCCc--------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-------GAGLINCDQLG--------HR--AYDVGT-------- 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-------g~~vi~~D~i~--------~~--~~~~~~-------- 118 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .|.+..
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVS 93 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcC
Confidence 356788999999999999999999999999999986 22233321110 00 011110
Q ss_pred ---------------------------hhHHHHHHHhCCc--cC-------CCCCccchHhHHHHhcCChH--HHHHHHh
Q psy17138 119 ---------------------------RGNQVVRELFGED--IA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQ 160 (212)
Q Consensus 119 ---------------------------~~~~~~~~~~g~~--~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~ 160 (212)
......++.+|.. .. -+.|+.+|-.++..+..+|+ +++++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 173 (243)
T TIGR01978 94 NLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDS 173 (243)
T ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 0011222233332 11 12345667788888888888 6688999
Q ss_pred hhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccc-cCeEEEEE
Q psy17138 161 AIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQ-VHEIWVTF 207 (212)
Q Consensus 161 i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~-~d~v~~v~ 207 (212)
.+++.....+.+.+.+.......+++.+|.+.+. ..+ ||+++++.
T Consensus 174 ~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~--~~~~~d~i~~l~ 219 (243)
T TIGR01978 174 GLDIDALKIVAEGINRLREPDRSFLIITHYQRLL--NYIKPDYVHVLL 219 (243)
T ss_pred cCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHH--HhhcCCeEEEEe
Confidence 9999999999999988753346777889988664 356 79998875
No 187
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.23 E-value=9.4e-12 Score=100.84 Aligned_cols=139 Identities=16% Similarity=0.128 Sum_probs=94.4
Q ss_pred CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------c-ccccC-------Cch--------
Q psy17138 67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------H-RAYDV-------GTR-------- 119 (212)
Q Consensus 67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~-~~~~~-------~~~-------- 119 (212)
.++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+ ...
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~ 94 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLG 94 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhH
Confidence 468889999999999999999999999999986 33333322110 0 00100 000
Q ss_pred -------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhh
Q psy17138 120 -------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARL 177 (212)
Q Consensus 120 -------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~ 177 (212)
....+++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.+++...+.+.+.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 174 (213)
T TIGR01277 95 LHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQL 174 (213)
T ss_pred hhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 11122333333211 13366678888888888888 568889999999999999998877
Q ss_pred c-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 178 S-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 178 ~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
. .....+++.+|.+.+. ..+||+++++.
T Consensus 175 ~~~~~~tii~vsh~~~~~--~~~~d~v~~l~ 203 (213)
T TIGR01277 175 CSERQRTLLMVTHHLSDA--RAIASQIAVVS 203 (213)
T ss_pred HHhcCCEEEEEeCCHHHH--HhhcCeEEEEE
Confidence 5 3356777778988653 46899999885
No 188
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.2e-11 Score=102.61 Aligned_cols=152 Identities=15% Similarity=0.104 Sum_probs=100.5
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCcccc-------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLGH------- 111 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~~------- 111 (212)
+++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...+++..+..
T Consensus 6 ~~~~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 6 ARDVNFWYGD----FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEECC----EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 4444555531 1356778899999999999999999999999999874 322233211110
Q ss_pred ----ccccCC------ch----------------------hHHHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138 112 ----RAYDVG------TR----------------------GNQVVRELFGED-----IA------LPDGSIDRKKLGAIV 148 (212)
Q Consensus 112 ----~~~~~~------~~----------------------~~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v 148 (212)
-.|.+. .. .....++.+|.. .. -+.|+.+|-.++..+
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM 161 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 001000 00 011223334421 01 123566777888888
Q ss_pred cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+|+ +++++.+.+++.....+.+.++++.. ...+++.+|.+.+. ..+||+++++.
T Consensus 162 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~--~~~~d~v~~l~ 219 (250)
T PRK14245 162 AVSPSVLLMDEPASALDPISTAKVEELIHELKK-DYTIVIVTHNMQQA--ARVSDKTAFFY 219 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHH--HhhCCEEEEEE
Confidence 88888 66889999999999999999988753 46778889988764 46899999885
No 189
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.23 E-value=6.8e-12 Score=103.17 Aligned_cols=140 Identities=16% Similarity=0.179 Sum_probs=93.9
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccccCCc------h----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAYDVGT------R---- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~~~~~------~---- 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+.. .
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n 95 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDN 95 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHH
Confidence 356778899999999999999999999999999987 33334332110 0 0010100 0
Q ss_pred --------hHHH---H---------HHHh--CCc------c-CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 120 --------GNQV---V---------RELF--GED------I-ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 120 --------~~~~---~---------~~~~--g~~------~-~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
.... . +..+ |.+ . .-+.|+.+|-.++..+..+|+ +++++.+.+++....
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 175 (237)
T cd03252 96 IALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175 (237)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence 0001 0 1111 100 0 013456677788888888888 568899999999999
Q ss_pred HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+.+... ...+++.+|.+.+. ..||+++++.
T Consensus 176 ~l~~~l~~~~~-~~tiii~sH~~~~~---~~~d~v~~l~ 210 (237)
T cd03252 176 AIMRNMHDICA-GRTVIIIAHRLSTV---KNADRIIVME 210 (237)
T ss_pred HHHHHHHHhcC-CCEEEEEeCCHHHH---HhCCEEEEEE
Confidence 99999988754 56788889998764 3599998875
No 190
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=1.1e-11 Score=112.76 Aligned_cols=154 Identities=14% Similarity=0.053 Sum_probs=105.5
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-------eeeeCCccc---------c
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-------GLINCDQLG---------H 111 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-------~vi~~D~i~---------~ 111 (212)
.+++.+++|.. ...++++++....|++++|+|+||||||||+++|+++-. ..++...+. +
T Consensus 7 ~~~nl~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 7 EMKNITKTFGG----VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred EEeeeEEEeCC----eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 35566666631 246788999999999999999999999999999998632 123221110 0
Q ss_pred cc-ccCC---------------------------c----hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCCh
Q psy17138 112 RA-YDVG---------------------------T----RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 112 ~~-~~~~---------------------------~----~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~ 152 (212)
.+ |.++ . .....+.+.+|.... -+.|+.+|-.++..+..+|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 00 0000 0 011233444554321 1236777889999999999
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+ +++++.+.++|.....+.+.+.++......+++-+|.+.+. ..+||+++++.
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~--~~~~d~v~~l~ 217 (506)
T PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEV--KAISDTICVIR 217 (506)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH--HHhcCEEEEEE
Confidence 8 66899999999999999999988753356778889998764 47899999875
No 191
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.23 E-value=1.4e-11 Score=98.99 Aligned_cols=140 Identities=17% Similarity=0.117 Sum_probs=94.3
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------cc-cccC-------C-------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------HR-AYDV-------G------- 117 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~~-~~~~-------~------- 117 (212)
.++++++...+|+++||+|+||||||||+++|+++ |...++...+. +. .|.+ .
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 94 (201)
T cd03231 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENL 94 (201)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHH
Confidence 56788899999999999999999999999999987 32333321110 00 0100 0
Q ss_pred --------chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCC
Q psy17138 118 --------TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSES 180 (212)
Q Consensus 118 --------~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~ 180 (212)
.......++.+|..-+. +.|+.+|..++..+.++|+ +++++.+.+++...+.+.+.+.+....
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 174 (201)
T cd03231 95 RFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174 (201)
T ss_pred HhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 01122333444432111 2356677888888888988 568899999999999999998776533
Q ss_pred CcEEEEEeccccccccccccCeEEEE
Q psy17138 181 HKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 181 ~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
...+++.+|...+ +...||+++..
T Consensus 175 g~tiii~sH~~~~--~~~~~~~~~~~ 198 (201)
T cd03231 175 GGMVVLTTHQDLG--LSEAGARELDL 198 (201)
T ss_pred CCEEEEEecCchh--hhhccceeEec
Confidence 5577777887655 34688888653
No 192
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=1.3e-11 Score=104.31 Aligned_cols=155 Identities=17% Similarity=0.148 Sum_probs=104.5
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------cc-
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------RA- 113 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~~- 113 (212)
.+++.+++|.. .....++++++...+|.+++|+|+||||||||+++|+++ |-..+++..+.. .+
T Consensus 7 ~~~~l~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 7 RVEHISFRYPD--AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred EEEEEEEEeCC--CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 46666666632 112367788899999999999999999999999999986 433343322210 00
Q ss_pred ccCC--------chh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138 114 YDVG--------TRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM 155 (212)
Q Consensus 114 ~~~~--------~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~ 155 (212)
|.+. ... ...++..+|..-+ -+.|+.+|..++..+..+|+ ++
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 164 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIIL 164 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1110 000 1222333343211 13356678888889999998 56
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++.+.++|.....+.+.+.++. .....+++.+|.+.+. . .||+++++.
T Consensus 165 DEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~--~-~~d~i~~l~ 214 (279)
T PRK13635 165 DEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEA--A-QADRVIVMN 214 (279)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHH--H-cCCEEEEEE
Confidence 88999999999999999998876 3356788889998775 2 499998875
No 193
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=1.1e-11 Score=104.49 Aligned_cols=154 Identities=12% Similarity=0.113 Sum_probs=102.0
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------c-c
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------H-R 112 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~-~ 112 (212)
+++.+++|.. ....++++++...+|++++|+|+||||||||+++|+++ |...++...+. + -
T Consensus 4 ~~~l~~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 4 TRDLKYSYPD---GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 4455555531 11356778899999999999999999999999999986 33333322110 0 0
Q ss_pred cccCCc--------hh---------------------HHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--H
Q psy17138 113 AYDVGT--------RG---------------------NQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--E 154 (212)
Q Consensus 113 ~~~~~~--------~~---------------------~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~ 154 (212)
.|.+.. .. ...+++.+|..-+. +.|+.+|..++..+..+|+ +
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 160 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV 160 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 011110 00 11222333332111 2356677888888999988 5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 155 MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 155 ~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.+.+++.....+.+.+.++......+++.+|.+.+. ..+||+++++.
T Consensus 161 lDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~--~~~~d~i~~l~ 211 (275)
T PRK13639 161 LDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLV--PVYADKVYVMS 211 (275)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 6889999999999999999988753356778889998764 46899998874
No 194
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.22 E-value=1.9e-11 Score=102.35 Aligned_cols=142 Identities=16% Similarity=0.112 Sum_probs=98.3
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------------cc---cccCC
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------------HR---AYDVG 117 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------------~~---~~~~~ 117 (212)
..++++++...+|++++|+|+||||||||+++|+++ |...++...+. .+ .+.+.
T Consensus 25 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 104 (265)
T TIGR02769 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPR 104 (265)
T ss_pred EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCC
Confidence 467888999999999999999999999999999987 33333321110 00 01100
Q ss_pred c----------------------hhHHHHHHHhCCc-c-CC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138 118 T----------------------RGNQVVRELFGED-I-AL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL 165 (212)
Q Consensus 118 ~----------------------~~~~~~~~~~g~~-~-~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~ 165 (212)
. ......++.+|.. . .+ +.|+.+|..++..+.++|+ +++++.+.+++.
T Consensus 105 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~ 184 (265)
T TIGR02769 105 MTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV 184 (265)
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 0 0112233445542 1 11 2356678888889999998 568889999999
Q ss_pred HHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 166 ILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 166 ~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
....+.+.+.++. .....+++.+|.+... ..+||+++++.
T Consensus 185 ~~~~l~~~l~~~~~~~g~tiiivsH~~~~~--~~~~d~i~~l~ 225 (265)
T TIGR02769 185 LQAVILELLRKLQQAFGTAYLFITHDLRLV--QSFCQRVAVMD 225 (265)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEeCCHHHH--HHHhcEEEEEe
Confidence 9999999888775 3356788889998764 46899998885
No 195
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.22 E-value=1.1e-11 Score=103.33 Aligned_cols=142 Identities=15% Similarity=0.042 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccccCCc-------h---
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAYDVGT-------R--- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~~~~~-------~--- 119 (212)
..++++++...+|++++|+|+||||||||+++|+++ |...++...+. + -.|.+.. .
T Consensus 15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (256)
T TIGR03873 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRD 94 (256)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHH
Confidence 367778899999999999999999999999999986 33333321110 0 0011000 0
Q ss_pred ----------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 120 ----------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 120 ----------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
.....++.+|..-. -+.|+.+|..++..+..+|+ +++++.+.+++....
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 174 (256)
T TIGR03873 95 VVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL 174 (256)
T ss_pred HHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 01122233333211 12356677788888888887 568899999999999
Q ss_pred HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+.+.......+++.+|.+.+. ..+||+++++.
T Consensus 175 ~l~~~l~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~ 211 (256)
T TIGR03873 175 ETLALVRELAATGVTVVAALHDLNLA--ASYCDHVVVLD 211 (256)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence 99999988753346788889988764 47899999885
No 196
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=2e-11 Score=98.96 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=93.8
Q ss_pred CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c-ccccC-------Cch---
Q psy17138 68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H-RAYDV-------GTR--- 119 (212)
Q Consensus 68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~-~~~~~-------~~~--- 119 (212)
++++...+ ++++|+|+||||||||+++|+++ |...++...+. + -.|.+ ...
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 78889999 99999999999999999999986 32333221110 0 00100 000
Q ss_pred ----------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138 120 ----------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI 174 (212)
Q Consensus 120 ----------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i 174 (212)
....+++.+|.... -+.|+.+|-.++..+..+|+ +++++.+.+++...+.+.+.+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 174 (214)
T cd03297 95 NLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPEL 174 (214)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 11223344443211 12356678888889999998 668899999999999999999
Q ss_pred Hhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 175 ARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 175 ~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.. .....+++-+|.+.+. ..+||+++++.
T Consensus 175 ~~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~ 206 (214)
T cd03297 175 KQIKKNLNIPVIFVTHDLSEA--EYLADRIVVME 206 (214)
T ss_pred HHHHHHcCcEEEEEecCHHHH--HHhcCEEEEEE
Confidence 8775 3355777779998763 46899999885
No 197
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.22 E-value=1.7e-11 Score=101.83 Aligned_cols=153 Identities=15% Similarity=0.062 Sum_probs=101.3
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc-----cc--------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ-----LG-------- 110 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~-----i~-------- 110 (212)
+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++... +.
T Consensus 6 ~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 6 VSGLSKSYGG----GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred EeeeEEEeCC----ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 4455555531 1346778899999999999999999999999999987 333333211 10
Q ss_pred ----c-ccccCCc---------h----------------------hHHHHHHHhCCc--cCC------CCCccchHhHHH
Q psy17138 111 ----H-RAYDVGT---------R----------------------GNQVVRELFGED--IAL------PDGSIDRKKLGA 146 (212)
Q Consensus 111 ----~-~~~~~~~---------~----------------------~~~~~~~~~g~~--~~~------~~~~~~r~~l~~ 146 (212)
+ -.|.+.. . ...++++.+|.. ..+ +.|+.+|..++.
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 0 0010000 0 011223334432 111 235667888999
Q ss_pred HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+..+|+ +++++.+.++|.....+.+.+.+.. .....+++.+|.+.+. ..+||+++++.
T Consensus 162 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~--~~~~d~~~~l~ 223 (253)
T TIGR02323 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVA--RLLAQRLLVMQ 223 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence 9999998 6688999999999999999887764 3355777778988654 46899998875
No 198
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.22 E-value=2e-11 Score=100.98 Aligned_cols=153 Identities=10% Similarity=0.063 Sum_probs=98.7
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC-------CeeeeCCccc---------cc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG-------AGLINCDQLG---------HR 112 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg-------~~vi~~D~i~---------~~ 112 (212)
+.+.+++|. + ...++++++...+|.+++|+|+||||||||+++|+++. ...++...+. ..
T Consensus 4 ~~nl~~~~~--~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 4 IKDLHVSVE--D--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred EEEEEEEeC--C--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 445555553 1 13577788999999999999999999999999999872 1233321110 00
Q ss_pred c-ccCCch-----------------------------------hHHHHHHHhCCc-------c--CCCCCccchHhHHHH
Q psy17138 113 A-YDVGTR-----------------------------------GNQVVRELFGED-------I--ALPDGSIDRKKLGAI 147 (212)
Q Consensus 113 ~-~~~~~~-----------------------------------~~~~~~~~~g~~-------~--~~~~~~~~r~~l~~~ 147 (212)
+ |.+... .....++.++.+ . .-+.|+.+|..++..
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara 159 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 159 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence 1 100000 001111222221 0 013456677888889
Q ss_pred hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccc-cCeEEEEE
Q psy17138 148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQ-VHEIWVTF 207 (212)
Q Consensus 148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~-~d~v~~v~ 207 (212)
+.++|+ +++++.+.+++.....+.+.+.++......+++.+|.+... ... ||+++++.
T Consensus 160 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~--~~~~~d~i~~l~ 220 (248)
T PRK09580 160 AVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL--DYIKPDYVHVLY 220 (248)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HhhhCCEEEEEE
Confidence 999998 66889999999999999988877653356778889987654 234 79988774
No 199
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.22 E-value=2e-11 Score=101.53 Aligned_cols=152 Identities=13% Similarity=0.099 Sum_probs=100.9
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC---------CeeeeCCcc------cc-c
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG---------AGLINCDQL------GH-R 112 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg---------~~vi~~D~i------~~-~ 112 (212)
+++.+++| +. ..++++++...+|.+++|+|+||||||||+++|+++- ...++...+ .+ -
T Consensus 7 ~~~l~~~~---~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 7 LRNIALQA---AQ--PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred EeCeEEEe---cc--ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 45555555 11 3577788999999999999999999999999999862 222332111 00 0
Q ss_pred cccCCc----------------------------hhHHHHHHHhCCcc----C------CCCCccchHhHHHHhcCChH-
Q psy17138 113 AYDVGT----------------------------RGNQVVRELFGEDI----A------LPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 113 ~~~~~~----------------------------~~~~~~~~~~g~~~----~------~~~~~~~r~~l~~~vf~~~~- 153 (212)
.|.++. ......++.+|... . -+.|+.+|-.++..+..+|+
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 161 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF 161 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 010000 01122233344321 0 12356678888888889988
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++...+.+.+.+++.. .....+++.+|.+.+. .++||+++++.
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~--~~~~d~v~~l~ 215 (254)
T PRK10418 162 IIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVV--ARLADDVAVMS 215 (254)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH--HHhCCEEEEEE
Confidence 5688889999999999999888764 3345777779988663 47899999885
No 200
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.22 E-value=1.8e-11 Score=101.62 Aligned_cols=152 Identities=14% Similarity=0.095 Sum_probs=100.5
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc--------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG-------- 110 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~-------- 110 (212)
+.+.+++|.. ...++++++...+|++++|+|+||||||||+++|+++ |...++...+.
T Consensus 9 ~~~l~~~~~~----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 9 ARGLSFFYGD----FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred EeeeEEEECC----eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 5555555531 1367888999999999999999999999999999976 22223321110
Q ss_pred --c-ccccCC------chh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138 111 --H-RAYDVG------TRG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIV 148 (212)
Q Consensus 111 --~-~~~~~~------~~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v 148 (212)
+ -.|.++ ... .....+.+|.. .. -+.|+.+|-.++..+
T Consensus 85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 164 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 0 011111 000 01112223321 00 123566777888888
Q ss_pred cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+|+ +++++.+.+++.....+.+.+.++.. ...+++.+|.+.+. ..+||+++++.
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~--~~~~d~v~~l~ 222 (253)
T PRK14242 165 AVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQA--ARVSDVTAFFY 222 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHH--HHhCCEEEEEE
Confidence 88888 56889999999999999999988754 46778889998764 47899998875
No 201
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.22 E-value=3.5e-11 Score=94.38 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=102.2
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccccccCC-----
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRAYDVG----- 117 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~~~~~----- 117 (212)
.+...-++|+ ....++++++..+.|.+|.|+|.|||||||++|+++-| |...++...+.-..-..+
T Consensus 8 ~v~dlHK~~G----~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 8 EVEDLHKRYG----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ehhHHHhhcc----cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 3455566675 33678889999999999999999999999999999966 444444433311000000
Q ss_pred -------------------------------------------chh---HHHHHHHhCCc-------cCCCCCccchHhH
Q psy17138 118 -------------------------------------------TRG---NQVVRELFGED-------IALPDGSIDRKKL 144 (212)
Q Consensus 118 -------------------------------------------~~~---~~~~~~~~g~~-------~~~~~~~~~r~~l 144 (212)
... -..++...|.. ..-+.|+.+|..+
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aI 163 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAI 163 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHH
Confidence 000 11112222211 1124577789999
Q ss_pred HHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 145 GAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 145 ~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
++.+.-+|. +++++++.++|+..-++...++++.+..++.++.+|-|--+ ++....++|+
T Consensus 164 ARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FA--R~Vss~v~fL 225 (256)
T COG4598 164 ARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFA--RDVSSHVIFL 225 (256)
T ss_pred HHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHH--HhhhhheEEe
Confidence 988888887 66888999999999999999988885555666668877554 4566666665
No 202
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.22 E-value=1.4e-11 Score=103.64 Aligned_cols=154 Identities=17% Similarity=0.103 Sum_probs=101.1
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----c-ccccC
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----H-RAYDV 116 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----~-~~~~~ 116 (212)
.+++.+++|.. + ...++++++...+|.+++|+|+||||||||+++|+++ |...+++..+. . -.|.+
T Consensus 8 ~~~~l~~~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~ 84 (272)
T PRK15056 8 VVNDVTVTWRN-G--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVP 84 (272)
T ss_pred EEEeEEEEecC-C--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEec
Confidence 35555555531 1 1356778899999999999999999999999999987 32223221110 0 00000
Q ss_pred C-------------------------------c---hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138 117 G-------------------------------T---RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 117 ~-------------------------------~---~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-- 153 (212)
. . ......++.+|..-. -+.|+.+|-.++..+..+|+
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 0 0 011223344443211 12356678888888999988
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
+++++.+.++|.....+.+.+.+.......+++.+|.+.+. ..+||+++++
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~--~~~~d~v~~~ 215 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSV--TEFCDYTVMV 215 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEE
Confidence 56889999999999999999988753356777879988653 4689998665
No 203
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.22 E-value=5e-11 Score=97.39 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=89.9
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----cccccCC-------------------------
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----HRAYDVG------------------------- 117 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----~~~~~~~------------------------- 117 (212)
...+|.+++|+|+||||||||+++|+++ |...++...+. +-.|.+.
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence 4567999999999999999999999986 33334332110 0001000
Q ss_pred ------c---hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcC
Q psy17138 118 ------T---RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSE 179 (212)
Q Consensus 118 ------~---~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~ 179 (212)
. ......++.+|..-.. +.|+.+|..++..+..+|+ +++++.+.+++.....+.+.+.++..
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~ 161 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG 161 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0 0122334444432111 2356677788888889888 56888999999999999999987753
Q ss_pred CCcEEEEEeccccccccccccCeEEEE
Q psy17138 180 SHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 180 ~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
....+++.+|.+.+. .++||+++++
T Consensus 162 ~~~tvii~sH~~~~~--~~~~d~i~~l 186 (223)
T TIGR03771 162 AGTAILMTTHDLAQA--MATCDRVVLL 186 (223)
T ss_pred cCCEEEEEeCCHHHH--HHhCCEEEEE
Confidence 456788889988753 5789999876
No 204
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.22 E-value=1.6e-11 Score=98.30 Aligned_cols=156 Identities=14% Similarity=0.117 Sum_probs=102.1
Q ss_pred eechhhhhhhh--ccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC--Ce-----eeeCCccc-----cc-c
Q psy17138 49 LSSSNLRMREL--GTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG--AG-----LINCDQLG-----HR-A 113 (212)
Q Consensus 49 iss~~~r~~~~--g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg--~~-----vi~~D~i~-----~~-~ 113 (212)
+++.+++|... +.....++++++...+|++++|+|+||||||||+++|+++- .+ .++...+. .. .
T Consensus 6 ~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~ 85 (194)
T cd03213 6 FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIG 85 (194)
T ss_pred EEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEE
Confidence 45555555321 00124678889999999999999999999999999999874 22 22221111 10 1
Q ss_pred ccCC-------chhHHHHHHHhCCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEE
Q psy17138 114 YDVG-------TRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVI 184 (212)
Q Consensus 114 ~~~~-------~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~v 184 (212)
|.+. ....+.+....... .-+.|+.+|-.++..+..+|+ +++++.+.+++...+.+.+.+++.......+
T Consensus 86 ~~~q~~~~~~~~t~~~~i~~~~~~~-~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~ti 164 (194)
T cd03213 86 YVPQDDILHPTLTVRETLMFAAKLR-GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTI 164 (194)
T ss_pred EccCcccCCCCCcHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 1111 11222111100000 125677788889999999988 5688899999999999999998775335678
Q ss_pred EEEecccc-ccccccccCeEEEEE
Q psy17138 185 VIEAAVLL-SAKWQDQVHEIWVTF 207 (212)
Q Consensus 185 vie~~~l~-e~~~~~~~d~v~~v~ 207 (212)
++.+|.+. +. ..+||+++++.
T Consensus 165 ii~sh~~~~~~--~~~~d~v~~l~ 186 (194)
T cd03213 165 ICSIHQPSSEI--FELFDKLLLLS 186 (194)
T ss_pred EEEecCchHHH--HHhcCEEEEEe
Confidence 88899874 32 46899998875
No 205
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=1.7e-11 Score=103.47 Aligned_cols=156 Identities=16% Similarity=0.101 Sum_probs=103.8
Q ss_pred eechhhhhhhhc--cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-
Q psy17138 49 LSSSNLRMRELG--TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H- 111 (212)
Q Consensus 49 iss~~~r~~~~g--~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~- 111 (212)
+.+.+++|.... .....++++++...+|++++|+|+||||||||+++|.++ |...++...+. +
T Consensus 7 ~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~ 86 (280)
T PRK13633 7 CKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNK 86 (280)
T ss_pred EeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhh
Confidence 555666664211 122477888999999999999999999999999999987 43334322211 0
Q ss_pred ccccCCc--------h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138 112 RAYDVGT--------R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 112 ~~~~~~~--------~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-- 153 (212)
-.|.+.. . ....+++.+|..-+ -+.|+.+|-.|+..+..+|.
T Consensus 87 i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 166 (280)
T PRK13633 87 AGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECI 166 (280)
T ss_pred eEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 0011110 0 01122233332211 12356677788888889988
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++.....+.+.+.++. .....+++.+|.+.+. .. ||+++++.
T Consensus 167 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~--~~-~d~v~~l~ 218 (280)
T PRK13633 167 IFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEA--VE-ADRIIVMD 218 (280)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHH--hc-CCEEEEEE
Confidence 5688999999999999999998775 3356778879999875 23 99998875
No 206
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.22 E-value=1.5e-11 Score=111.46 Aligned_cols=142 Identities=17% Similarity=0.113 Sum_probs=99.0
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------cc-cccCCc-------h--
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------HR-AYDVGT-------R-- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~~-~~~~~~-------~-- 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .|.++. .
T Consensus 12 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (491)
T PRK10982 12 KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVM 91 (491)
T ss_pred EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHH
Confidence 356788999999999999999999999999999986 33333332110 00 010000 0
Q ss_pred ----------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 120 ----------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 120 ----------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
....+++.+|.... -+.|+.+|..++..+..+|+ +++++.+.+++....
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~ 171 (491)
T PRK10982 92 DNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVN 171 (491)
T ss_pred HHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 11223334443211 12367778889999999998 568999999999999
Q ss_pred HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+.++......+++-+|.+.+. ..+||++++++
T Consensus 172 ~l~~~l~~l~~~g~tvii~tH~~~~~--~~~~d~i~~l~ 208 (491)
T PRK10982 172 HLFTIIRKLKERGCGIVYISHKMEEI--FQLCDEITILR 208 (491)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 99999988753455777779998764 46899999885
No 207
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=1.2e-11 Score=95.58 Aligned_cols=135 Identities=19% Similarity=0.165 Sum_probs=91.8
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC-----CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCcc
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG-----AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSI 139 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg-----~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 139 (212)
...++++...+|.+++|+|+|||||||++++|.++- ...++...+... .........+.-..-+.|+.
T Consensus 14 ~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~-------~~~~~~~~i~~~~qlS~G~~ 86 (157)
T cd00267 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKL-------PLEELRRRIGYVPQLSGGQR 86 (157)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccC-------CHHHHHhceEEEeeCCHHHH
Confidence 456677888899999999999999999999999862 222222111100 00001011110000246777
Q ss_pred chHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 140 DRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 140 ~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
.|..++..+..+|. +++++.+.+++.....+.+.+.+.......+++.+|.+.+. ..+||+++.+.-
T Consensus 87 ~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~--~~~~d~i~~l~~ 155 (157)
T cd00267 87 QRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELA--ELAADRVIVLKD 155 (157)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHhCCEEEEEeC
Confidence 78888888888877 56888899999999999998887653346888889998775 357899988753
No 208
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.21 E-value=2.9e-11 Score=99.47 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=93.5
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccccCCc------h-----
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAYDVGT------R----- 119 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~~~~~------~----- 119 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+.. .
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l 97 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI 97 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHh
Confidence 56778899999999999999999999999999987 33333331110 0 0011110 0
Q ss_pred ----------hHHHHHHHhC-----------Ccc-------CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138 120 ----------GNQVVRELFG-----------EDI-------ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ 169 (212)
Q Consensus 120 ----------~~~~~~~~~g-----------~~~-------~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~ 169 (212)
......+.++ ... .-+.|+.+|..++..+..+|+ +++++.+.++|..++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~ 177 (238)
T cd03249 98 RYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL 177 (238)
T ss_pred hccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHH
Confidence 0000111111 000 013355667788888888888 5688999999999999
Q ss_pred HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.+.+.. ....+++.+|.+.+. . +||+++++.
T Consensus 178 l~~~l~~~~-~g~~vi~~sh~~~~~--~-~~d~v~~l~ 211 (238)
T cd03249 178 VQEALDRAM-KGRTTIVIAHRLSTI--R-NADLIAVLQ 211 (238)
T ss_pred HHHHHHHhc-CCCEEEEEeCCHHHH--h-hCCEEEEEE
Confidence 999998775 456788889988764 3 699998874
No 209
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.6e-11 Score=102.87 Aligned_cols=154 Identities=15% Similarity=0.078 Sum_probs=102.1
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG------ 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~------ 110 (212)
..+++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+.
T Consensus 22 l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 22 LEVKDLSIYYGE----KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred EEEEEEEEEeCC----ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 346676666642 2367788899999999999999999999999999985 22223221110
Q ss_pred ----c-ccccCC------chhH----------------------HHHHHHhCCc-----cC------CCCCccchHhHHH
Q psy17138 111 ----H-RAYDVG------TRGN----------------------QVVRELFGED-----IA------LPDGSIDRKKLGA 146 (212)
Q Consensus 111 ----~-~~~~~~------~~~~----------------------~~~~~~~g~~-----~~------~~~~~~~r~~l~~ 146 (212)
+ -.|.+. ...+ ......++.. .. -+.|+.+|-.|+.
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lar 177 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIAR 177 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHH
Confidence 0 001110 0100 0111222211 00 1235667778888
Q ss_pred HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+..+|+ +++++.+.+++.....+.+.+.+...+ ..+++.+|.+.+. ..+||++++++
T Consensus 178 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~tiii~tH~~~~~--~~~~d~v~~l~ 237 (268)
T PRK14248 178 TLAMKPAVLLLDEPASALDPISNAKIEELITELKEE-YSIIIVTHNMQQA--LRVSDRTAFFL 237 (268)
T ss_pred HHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcC-CEEEEEEeCHHHH--HHhCCEEEEEE
Confidence 8889988 668899999999999999999887543 5788889998653 57899999885
No 210
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=3.1e-11 Score=98.67 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=99.6
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAY 114 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~ 114 (212)
+++.+++|.. .....+++++...+|.+++|+|+||||||||+++|+++ |...++...+. . -.|
T Consensus 5 ~~~l~~~~~~---~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 5 FENVNFSYDE---KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred EEEEEEecCC---CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 4555555531 11357778899999999999999999999999999986 43444332211 0 011
Q ss_pred cCCc---------------------hhHHHHHHHhCC-----------c-------cCCCCCccchHhHHHHhcCChH--
Q psy17138 115 DVGT---------------------RGNQVVRELFGE-----------D-------IALPDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 115 ~~~~---------------------~~~~~~~~~~g~-----------~-------~~~~~~~~~r~~l~~~vf~~~~-- 153 (212)
.+.. .........++. . ..-+.|+.+|-.|+..+.++|+
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ll 161 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKIL 161 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 1110 000111111110 0 0013456678889999999998
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++.....+.+.+.+... ...+++.+|.+.+. ..||+++++.
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~---~~~d~i~~l~ 211 (229)
T cd03254 162 ILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRLSTI---KNADKILVLD 211 (229)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHH---hhCCEEEEEe
Confidence 56889999999999999999987743 56788889988764 3499999884
No 211
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.21 E-value=2e-11 Score=101.42 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------------------ccc-c--
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------------------HRA-Y-- 114 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------------------~~~-~-- 114 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +.+ |
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 93 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVF 93 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEe
Confidence 356778899999999999999999999999999986 33333322110 000 1
Q ss_pred -----cCCchh----------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138 115 -----DVGTRG----------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKL 158 (212)
Q Consensus 115 -----~~~~~~----------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~ 158 (212)
.+.... ....++.+|..-. -+.|+.+|-.++..+..+|+ +++++
T Consensus 94 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (252)
T TIGR03005 94 QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173 (252)
T ss_pred cCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 000000 1122333343211 12356677888888888888 56888
Q ss_pred HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+++.....+.+.++++. .....+++.+|.+.+. .++||+++++.
T Consensus 174 ~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~--~~~~d~i~~l~ 221 (252)
T TIGR03005 174 TSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFA--REFADRVCFFD 221 (252)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH--HHhcCEEEEEE
Confidence 99999999999999888765 3356777779998763 56899999885
No 212
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.21 E-value=2e-11 Score=111.55 Aligned_cols=158 Identities=16% Similarity=0.107 Sum_probs=105.3
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCe----------eeeCCccc-------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAG----------LINCDQLG------- 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~----------vi~~D~i~------- 110 (212)
.+++.+++|...+.....++++++...+|++++|+|+||||||||+++|+++-.+ .++...+.
T Consensus 7 ~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 86 (529)
T PRK15134 7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTL 86 (529)
T ss_pred EEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHH
Confidence 3556666663211123467889999999999999999999999999999986321 22221110
Q ss_pred -----cc-cccCCc-------------------------------hhHHHHHHHhCCcc----C------CCCCccchHh
Q psy17138 111 -----HR-AYDVGT-------------------------------RGNQVVRELFGEDI----A------LPDGSIDRKK 143 (212)
Q Consensus 111 -----~~-~~~~~~-------------------------------~~~~~~~~~~g~~~----~------~~~~~~~r~~ 143 (212)
+. .|.++. ......++.+|... . -+.|+.+|..
T Consensus 87 ~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~ 166 (529)
T PRK15134 87 RGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVM 166 (529)
T ss_pred HHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHH
Confidence 00 010000 00112233344321 0 1235667889
Q ss_pred HHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 144 LGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 144 l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++..+..+|+ +++++.+.++|.....+.+.++++. .....+++-+|.+.+. ..+||+++++.
T Consensus 167 iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~--~~~~dri~~l~ 231 (529)
T PRK15134 167 IAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIV--RKLADRVAVMQ 231 (529)
T ss_pred HHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHH--HHhcCEEEEEE
Confidence 9999999998 6689999999999999999998875 3345777779998764 47899999875
No 213
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.6e-11 Score=105.64 Aligned_cols=159 Identities=14% Similarity=0.081 Sum_probs=106.7
Q ss_pred cceechhhhhhhhc-cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------
Q psy17138 47 DKLSSSNLRMRELG-TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g-~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------- 110 (212)
..+.+.+++|.... .....++++++...+|.+++|+|+||||||||+++|+++ |...++.-.+.
T Consensus 22 l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 101 (320)
T PRK13631 22 LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELIT 101 (320)
T ss_pred EEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccc
Confidence 34666666664211 112478889999999999999999999999999999987 43344321000
Q ss_pred --------------ccc-ccCC--------ch---------------------hHHHHHHHhCCc--cCC------CCCc
Q psy17138 111 --------------HRA-YDVG--------TR---------------------GNQVVRELFGED--IAL------PDGS 138 (212)
Q Consensus 111 --------------~~~-~~~~--------~~---------------------~~~~~~~~~g~~--~~~------~~~~ 138 (212)
+.+ |.+. .. .....++.+|.. ... +.|+
T Consensus 102 ~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq 181 (320)
T PRK13631 102 NPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQ 181 (320)
T ss_pred cccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHH
Confidence 000 0000 00 112223344432 111 2356
Q ss_pred cchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 139 IDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 139 ~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+|..|+..+..+|+ +++++.+.+++...+.+.+.+.++......+++.+|.+.+. ..+||+++++.
T Consensus 182 kqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~--~~~adri~vl~ 250 (320)
T PRK13631 182 KRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHV--LEVADEVIVMD 250 (320)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 778889999999998 56888999999999999999987653356777889998753 46899999875
No 214
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.1e-11 Score=101.63 Aligned_cols=153 Identities=15% Similarity=0.079 Sum_probs=101.1
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc-------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG------- 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~------- 110 (212)
.+++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++.. ..++...+.
T Consensus 6 ~i~~v~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 6 DVKDLNIYYGS----FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred EEeeEEEEECC----EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 35556666532 146778889999999999999999999999999998632 122221110
Q ss_pred ---cc-cccCC-------chh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHH
Q psy17138 111 ---HR-AYDVG-------TRG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGA 146 (212)
Q Consensus 111 ---~~-~~~~~-------~~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~ 146 (212)
+. .|.+. ... ...+.+.+|.. .. -+.|+.+|-.++.
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIAR 161 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 00 01000 000 01122233321 00 1235667888888
Q ss_pred HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+..+|+ +++++.+.+++.....+.+.+.+... ...+++.+|.+.+. .++||+++++.
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~--~~~~d~i~~l~ 221 (258)
T PRK14241 162 AIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQA--ARVSDQTAFFN 221 (258)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH--HHhCCEEEEEe
Confidence 8889988 56889999999999999999987753 35778889988763 57899998885
No 215
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=1.9e-11 Score=103.29 Aligned_cols=154 Identities=16% Similarity=0.110 Sum_probs=102.3
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc--------CCeeeeCCccc---------c
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL--------GAGLINCDQLG---------H 111 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l--------g~~vi~~D~i~---------~ 111 (212)
+.+.+++|... ....++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +
T Consensus 8 i~~l~~~~~~~--~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ 85 (282)
T PRK13640 8 FKHVSFTYPDS--KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREK 85 (282)
T ss_pred EEEEEEEcCCC--CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhh
Confidence 55555555311 12367788899999999999999999999999999986 23333332211 0
Q ss_pred ccccCC--------chh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138 112 RAYDVG--------TRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 112 ~~~~~~--------~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-- 153 (212)
-.|.+. ... ...+++.+|..-. -+.|+.+|-.|+..+.++|+
T Consensus 86 ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ll 165 (282)
T PRK13640 86 VGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKII 165 (282)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 001110 000 1122333443211 12356678888889999998
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++.....+.+.+.+.. .....+++.+|.+.+. ..||+++++.
T Consensus 166 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~---~~~d~i~~l~ 217 (282)
T PRK13640 166 ILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA---NMADQVLVLD 217 (282)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH---HhCCEEEEEE
Confidence 5688899999999999999998775 3356777779998764 3699998874
No 216
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.20 E-value=1.8e-11 Score=101.94 Aligned_cols=141 Identities=15% Similarity=0.092 Sum_probs=95.7
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---cccc--c-------------cCC--c
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHRA--Y-------------DVG--T 118 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~~--~-------------~~~--~ 118 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++.. .+ ..+. + .+. .
T Consensus 19 vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~ 98 (251)
T PRK09544 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKK 98 (251)
T ss_pred EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccH
Confidence 56778889999999999999999999999999986 22222211 00 0000 0 000 0
Q ss_pred hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEe
Q psy17138 119 RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEA 188 (212)
Q Consensus 119 ~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~ 188 (212)
......++.+|..-+ -+.|+.+|..++..+..+|+ +++++.+.+++.....+.+.+.+.. .....+++.+
T Consensus 99 ~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivs 178 (251)
T PRK09544 99 EDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVS 178 (251)
T ss_pred HHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 112233444443211 13356778888888888888 5688999999999999999887765 3246777779
Q ss_pred ccccccccccccCeEEEEE
Q psy17138 189 AVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 189 ~~l~e~~~~~~~d~v~~v~ 207 (212)
|.+.+. .++||+++++.
T Consensus 179 H~~~~i--~~~~d~i~~l~ 195 (251)
T PRK09544 179 HDLHLV--MAKTDEVLCLN 195 (251)
T ss_pred cCHHHH--HHhCCEEEEEC
Confidence 998763 46899998874
No 217
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.20 E-value=2.2e-11 Score=102.12 Aligned_cols=142 Identities=16% Similarity=0.071 Sum_probs=94.4
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc--ccccc-ccC---------------C--c
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ--LGHRA-YDV---------------G--T 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~--i~~~~-~~~---------------~--~ 118 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++... +.... +.+ + .
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~ 117 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKR 117 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCH
Confidence 345778999999999999999999999999999987 322222210 00000 000 0 0
Q ss_pred h----hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEE
Q psy17138 119 R----GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIV 185 (212)
Q Consensus 119 ~----~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vv 185 (212)
. ....+.+.++..-. -+.|+..|-.++..+..+|+ +++++.+.++|.....+.+.+.+.......++
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiI 197 (264)
T PRK13546 118 KEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIF 197 (264)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 0 01122233332111 13456667788888888888 56888999999999999888877653456777
Q ss_pred EEeccccccccccccCeEEEEE
Q psy17138 186 IEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 186 ie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+|.+.+. ..+||+++++.
T Consensus 198 iisH~~~~i--~~~~d~i~~l~ 217 (264)
T PRK13546 198 FVSHNLGQV--RQFCTKIAWIE 217 (264)
T ss_pred EEcCCHHHH--HHHcCEEEEEE
Confidence 779987664 46899998874
No 218
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.20 E-value=3.2e-11 Score=106.70 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=114.0
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..+.+..++|. -..+.+++++....|++-+|.|.||+|||||+++|.++ |-.++++..+.
T Consensus 5 l~~~~itK~f~----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 5 LEMRGITKRFP----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred EEEeccEEEcC----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 35778888886 44788899999999999999999999999999999986 33444433320
Q ss_pred ----c-------------ccc---cCC----------chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH
Q psy17138 111 ----H-------------RAY---DVG----------TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 111 ----~-------------~~~---~~~----------~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~ 153 (212)
| .+. .+. ......+.+.+|.++-. +-|..+|-.+-..+|++++
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~ 160 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGAR 160 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCC
Confidence 0 000 000 01244556677776521 1256788888899999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.++++++.+.|.-.+++...++.+....+.|++=+|-|-|. ..+||++.++.
T Consensus 161 iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev--~~iaDrvTVLR 214 (501)
T COG3845 161 LLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEV--MAIADRVTVLR 214 (501)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH--HHhhCeeEEEe
Confidence 56899999999999999999998885555555559999885 67999998764
No 219
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.20 E-value=3.2e-11 Score=109.80 Aligned_cols=141 Identities=18% Similarity=0.190 Sum_probs=99.0
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-ccccCCc-----------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RAYDVGT----------- 118 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~~~~~~----------- 118 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+..
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 357 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFS 357 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCc
Confidence 57888999999999999999999999999999986 33333321110 0 0010000
Q ss_pred -----------------------------hhHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHH
Q psy17138 119 -----------------------------RGNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLN 159 (212)
Q Consensus 119 -----------------------------~~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~ 159 (212)
.....+++.+|.. ..+ +.|+.+|..|+..+..+|+ +++++.
T Consensus 358 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 437 (510)
T PRK09700 358 IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPT 437 (510)
T ss_pred HHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 0012334455542 111 3467778889988888988 568999
Q ss_pred hhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 160 QAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 160 ~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+++.....+.+.+.++......+++-+|.+.+. ..+||+++++.
T Consensus 438 ~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~--~~~~d~i~~l~ 483 (510)
T PRK09700 438 RGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEI--ITVCDRIAVFC 483 (510)
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH--HhhCCEEEEEE
Confidence 99999999999999987753355778889998664 47899998874
No 220
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=3.7e-11 Score=100.86 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=102.4
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-c
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR-A 113 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~-~ 113 (212)
.+.+.+++|... ....++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .
T Consensus 9 ~i~~l~~~~~~~--~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 9 VFKNVSFQYQSD--ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred EEEEEEEEcCCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 355555655321 11356778899999999999999999999999999987 33333321110 00 0
Q ss_pred ccCCc-----------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138 114 YDVGT-----------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM 155 (212)
Q Consensus 114 ~~~~~-----------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~ 155 (212)
|.+.. .....+.+.+|..-+ -+.|+.+|-.++..+..+|+ ++
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL 166 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIIL 166 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 10000 011223344443211 12356677788889999988 56
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++.+.+++...+.+.+.+.+.. .....+++.+|.+.+. . .||+++++.
T Consensus 167 DEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~--~-~~d~i~~l~ 216 (269)
T PRK13648 167 DEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEA--M-EADHVIVMN 216 (269)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHH--h-cCCEEEEEE
Confidence 88999999999999999988765 3356778889998765 3 499998875
No 221
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.20 E-value=2.3e-11 Score=103.82 Aligned_cols=53 Identities=34% Similarity=0.522 Sum_probs=49.5
Q ss_pred CeEecccchhhHHHHHHHHHHCCCCCccEEEeecccCCCCCCcccccceechhhhhhhh
Q psy17138 1 NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMREL 59 (212)
Q Consensus 1 ~~vvs~et~~~~~~in~~r~~~gl~~l~~~~i~~~~~~~~~~~~~~~~iss~~~r~~~~ 59 (212)
+||||+||..+|.+||+.|+|+||+||+|++|+++. + .++.++||+++|....
T Consensus 88 ~IVVS~ET~~~~~~IN~~R~e~Gl~pleIv~I~~v~-~-----~d~~~iSSTrIr~~ei 140 (322)
T PRK01170 88 IIVVSPETYQRALKINEIRIKNGLPPLKIVRVPYVL-A-----EDLFPISSTRIINGEI 140 (322)
T ss_pred EEEEeccccccHHHHHHHHHHCCCCceEEEEEEeEE-c-----CCCCcccHHHHhhhhc
Confidence 599999999999999999999999999999999999 6 5678999999999865
No 222
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.20 E-value=3.2e-11 Score=97.63 Aligned_cols=142 Identities=20% Similarity=0.215 Sum_probs=95.7
Q ss_pred cCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccc----------cccCCch-------h
Q psy17138 63 RKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHR----------AYDVGTR-------G 120 (212)
Q Consensus 63 l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~----------~~~~~~~-------~ 120 (212)
...+.++++..++|++++|+|+||+||||+++.|+++ |...+++.++.+. .|.|... .
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTV 95 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTV 95 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcH
Confidence 4677889999999999999999999999999999987 4445555444211 0111110 0
Q ss_pred --------------------HHHHHHHhCCc--------cCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHH
Q psy17138 121 --------------------NQVVRELFGED--------IALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQV 170 (212)
Q Consensus 121 --------------------~~~~~~~~g~~--------~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~ 170 (212)
.+.+.+.|..- -.-+.|+.+...++..+..+|. +++++...+.|.+..++
T Consensus 96 eENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I 175 (237)
T COG0410 96 EENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 175 (237)
T ss_pred HHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHH
Confidence 22233333210 0013455667788889999998 56889999999999999
Q ss_pred HHHHHhhc-CCC-cEEEEEeccccccccccccCeEEEEE
Q psy17138 171 KEEIARLS-ESH-KVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 171 ~~~i~~~~-~~~-~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.|++++ ... .++++|=+ ...+ .++.|+..++.
T Consensus 176 ~~~i~~l~~~~g~tIlLVEQn-~~~A--l~iaDr~yvle 211 (237)
T COG0410 176 FEAIKELRKEGGMTILLVEQN-ARFA--LEIADRGYVLE 211 (237)
T ss_pred HHHHHHHHHcCCcEEEEEecc-HHHH--HHhhCEEEEEe
Confidence 99999987 333 45555433 3332 46788887765
No 223
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.20 E-value=2.4e-11 Score=99.32 Aligned_cols=141 Identities=20% Similarity=0.174 Sum_probs=95.6
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC-----C-----eeeeCCccc----------cc-cccCCc----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG-----A-----GLINCDQLG----------HR-AYDVGT---- 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg-----~-----~vi~~D~i~----------~~-~~~~~~---- 118 (212)
..++++++...+|++++|+|+||||||||+++|+++- . ..++...+. +. .|.+..
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 93 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF 93 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc
Confidence 3567788999999999999999999999999999864 2 122221110 00 011110
Q ss_pred --h----------------------hHHHHHHHhCCccC---------CCCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138 119 --R----------------------GNQVVRELFGEDIA---------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIW 163 (212)
Q Consensus 119 --~----------------------~~~~~~~~~g~~~~---------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~ 163 (212)
. ....+++.+|..-. -+.|+.+|..++..+..+|+ +++++.+.++
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 173 (227)
T cd03260 94 PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173 (227)
T ss_pred cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 0 01122333343211 12245567788888888887 5688999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 164 PLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 164 p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.....+.+.+.+.... ..+++.+|.+.+. .++||+++++.
T Consensus 174 ~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~--~~~~d~i~~l~ 214 (227)
T cd03260 174 PISTAKIEELIAELKKE-YTIVIVTHNMQQA--ARVADRTAFLL 214 (227)
T ss_pred HHHHHHHHHHHHHHhhC-cEEEEEeccHHHH--HHhCCEEEEEe
Confidence 99999999999887644 6788889998653 46899998875
No 224
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.20 E-value=2.7e-11 Score=100.27 Aligned_cols=141 Identities=16% Similarity=0.133 Sum_probs=96.3
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc----------cc-cccCC-----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG----------HR-AYDVG----- 117 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~----------~~-~~~~~----- 117 (212)
..++++++...+|++++|+|+||||||||+++|+++.. ..++...+. +. .|.+.
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 35678899999999999999999999999999997632 123221111 00 01000
Q ss_pred -ch----------------------hHHHHHHHhCCc-----cC------CCCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138 118 -TR----------------------GNQVVRELFGED-----IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQA 161 (212)
Q Consensus 118 -~~----------------------~~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i 161 (212)
.. .....++.+|.. .. -+.|+.+|-.++..+..+|+ +++++.+.
T Consensus 95 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 174 (247)
T TIGR00972 95 PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA 174 (247)
T ss_pred CCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 00 011222333432 11 12356678888888888988 56889999
Q ss_pred hhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 162 IWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 162 ~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++.....+.+.+.+...+ ..+++.+|.+.+. ..+||++++++
T Consensus 175 LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~~--~~~~d~i~~l~ 217 (247)
T TIGR00972 175 LDPIATGKIEELIQELKKK-YTIVIVTHNMQQA--ARISDRTAFFY 217 (247)
T ss_pred CCHHHHHHHHHHHHHHHhc-CeEEEEecCHHHH--HHhCCEEEEEE
Confidence 9999999999999877543 6788889998764 47899998875
No 225
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.7e-11 Score=100.64 Aligned_cols=152 Identities=13% Similarity=0.045 Sum_probs=100.3
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc--------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG-------- 110 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~-------- 110 (212)
+.+.+++|.. ...++++++...+|++++|+|+||||||||+++|+++- ...++...+.
T Consensus 7 ~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 7 TVNLRVYYGS----NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred EEeEEEEeCC----eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 4555555531 13678889999999999999999999999999999862 2223321111
Q ss_pred --cc-cccCC-------chh-----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHH
Q psy17138 111 --HR-AYDVG-------TRG-----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGA 146 (212)
Q Consensus 111 --~~-~~~~~-------~~~-----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~ 146 (212)
+. .|.+. ... .....+.+|.. .. -+.|+.+|-.++.
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR 162 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHH
Confidence 00 01100 000 11122333321 01 1235567778888
Q ss_pred HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.++|+ +++++.+.+++.....+.+.+.+... ...+++.+|.+.+. ..+||+++++.
T Consensus 163 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~--~~~~d~i~~l~ 222 (253)
T PRK14267 163 ALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQA--ARVSDYVAFLY 222 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHH--HhhCCEEEEEE
Confidence 8888888 56888999999999999999987753 36788889998663 56899998875
No 226
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=2.1e-11 Score=103.09 Aligned_cols=155 Identities=14% Similarity=0.160 Sum_probs=104.1
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------c-
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------H- 111 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~- 111 (212)
.+++.+++|.. + ...++++++...+|++++|+|+||||||||+++|+++ |...+++..+. .
T Consensus 7 ~~~~l~~~~~~-~--~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 7 KVEELNYNYSD-G--THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred EEEeEEEEeCC-C--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 35666666631 1 2367888999999999999999999999999999987 43334332210 0
Q ss_pred ccccCCc--------hh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138 112 RAYDVGT--------RG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 112 ~~~~~~~--------~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-- 153 (212)
-.|.+.. .. .....+.+|..-+ -+.|+.+|..++..+..+|.
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lL 163 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 163 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 0011110 00 1122233332211 12356678888888889988
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++.....+.+.+.+.. .....+++.+|.+.+. ..+||+++++.
T Consensus 164 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~--~~~~dri~~l~ 216 (283)
T PRK13636 164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIV--PLYCDNVFVMK 216 (283)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 5688999999999999999888775 3356788889999774 46899998874
No 227
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.6e-11 Score=100.51 Aligned_cols=152 Identities=14% Similarity=0.063 Sum_probs=100.6
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc--------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG-------- 110 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~-------- 110 (212)
+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++.. ..++...+.
T Consensus 6 ~~~l~~~~~~----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 6 IRDLKVSFGQ----VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred EEeeEEEECC----eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 4555555531 135678899999999999999999999999999998632 223221111
Q ss_pred ccc-cc-------CCchh-----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138 111 HRA-YD-------VGTRG-----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIV 148 (212)
Q Consensus 111 ~~~-~~-------~~~~~-----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v 148 (212)
..+ |. +.... ....++.+|.. .. -+.|+.+|-.++..+
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 161 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARAL 161 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 000 10 00000 11222333421 01 123556778888888
Q ss_pred cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+|+ +++++.+.+++.....+.+.+.+... ...+++.+|.+.+. ..+||+++++.
T Consensus 162 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~--~~~~d~i~~l~ 219 (250)
T PRK14247 162 AFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQA--ARISDYVAFLY 219 (250)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH--HHhcCEEEEEE
Confidence 88888 56889999999999999999988754 46788889988653 46899998875
No 228
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.20 E-value=3.3e-11 Score=98.50 Aligned_cols=157 Identities=10% Similarity=0.098 Sum_probs=99.2
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC--------eeeeCCccc-----cc-cc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA--------GLINCDQLG-----HR-AY 114 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~--------~vi~~D~i~-----~~-~~ 114 (212)
+.+..+++...+.....++++++...+|++++|+|+||||||||+++|+++-. ..++...+. +. .|
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~ 85 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAY 85 (226)
T ss_pred eecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEE
Confidence 44444555322112346777889999999999999999999999999997632 122221110 00 01
Q ss_pred cC-------Cchh------------------------HHH-HHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138 115 DV-------GTRG------------------------NQV-VRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 115 ~~-------~~~~------------------------~~~-~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-- 153 (212)
.+ .... ... .+..++.... -+.|+.+|-.++..+..+|+
T Consensus 86 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~il 165 (226)
T cd03234 86 VRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVL 165 (226)
T ss_pred eCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEE
Confidence 00 0000 001 2222232111 12355667778888888887
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecccc-ccccccccCeEEEEE
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLL-SAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~-e~~~~~~~d~v~~v~ 207 (212)
+++++...+++.....+.+.+.+.......+++.+|.+. +. ..+||+++++.
T Consensus 166 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~--~~~~d~i~~l~ 218 (226)
T cd03234 166 ILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDL--FRLFDRILLLS 218 (226)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHH--HHhCCEEEEEe
Confidence 568888999999999999999876533567788788873 43 46899999876
No 229
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.20 E-value=3.1e-11 Score=100.10 Aligned_cols=153 Identities=13% Similarity=0.116 Sum_probs=99.0
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCcc--------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQL-------- 109 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i-------- 109 (212)
.+.+.+++|.. ...++++++...+|++++|+|+||||||||+++|+++ |...++...+
T Consensus 7 ~~~~l~~~~~~----~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 7 QVSDLSVYYNK----KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred EEEeeEEEECC----eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 34555555531 1356778899999999999999999999999999976 2222332111
Q ss_pred --cc-ccccCC------chhHHH----------------------HHHHhCCc-----cC------CCCCccchHhHHHH
Q psy17138 110 --GH-RAYDVG------TRGNQV----------------------VRELFGED-----IA------LPDGSIDRKKLGAI 147 (212)
Q Consensus 110 --~~-~~~~~~------~~~~~~----------------------~~~~~g~~-----~~------~~~~~~~r~~l~~~ 147 (212)
.+ -.|.+. ....+. ..+.+|.. .. -+.|+.+|..++..
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARV 162 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 00 001111 001110 11122210 00 12355667788888
Q ss_pred hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+..+|+ +++++.+.+++.....+.+.+.+... ...+++.+|.+.+. ..+||+++++.
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~--~~~~d~i~~l~ 221 (252)
T PRK14239 163 LATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQA--SRISDRTGFFL 221 (252)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHH--HHhCCEEEEEE
Confidence 888888 56889999999999999999987753 36777879988653 46899999885
No 230
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=2.6e-11 Score=100.70 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=100.4
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc-------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG------- 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~------- 110 (212)
.+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++.. ..++...+.
T Consensus 6 ~~~nl~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 6 KLEQLNVHFGK----NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred EEEEEEEEeCC----eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 35555555531 136778889999999999999999999999999998731 122221110
Q ss_pred ---c-ccccCC-------ch----------------------hHHHHHHHhCCcc-----C------CCCCccchHhHHH
Q psy17138 111 ---H-RAYDVG-------TR----------------------GNQVVRELFGEDI-----A------LPDGSIDRKKLGA 146 (212)
Q Consensus 111 ---~-~~~~~~-------~~----------------------~~~~~~~~~g~~~-----~------~~~~~~~r~~l~~ 146 (212)
+ -.|.+. .. .....++.+|... . -+.|+.+|..++.
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 0 001000 00 0112223344210 0 1235666778888
Q ss_pred HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+..+|+ +++++.+.+++...+.+.+.++++..+ ..+++.+|.+.+. ..+||+++++.
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~~--~~~~d~i~~l~ 221 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKEK-YTIIIVTHNMQQA--ARVSDYTAFFY 221 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CcEEEEECCHHHH--HhhCCEEEEEE
Confidence 8888888 568888899999999999998887543 5777779988663 47899998875
No 231
>KOG0057|consensus
Probab=99.19 E-value=6.2e-11 Score=105.99 Aligned_cols=140 Identities=17% Similarity=0.144 Sum_probs=95.7
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCcccc---c------cccCCc------------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLGH---R------AYDVGT------------ 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~~---~------~~~~~~------------ 118 (212)
+.+++++++.++|+.+||+|+|||||||++|+|-++ |-..+|+-++.. + -|.|+.
T Consensus 366 ~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI 445 (591)
T KOG0057|consen 366 KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNI 445 (591)
T ss_pred ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHh
Confidence 467889999999999999999999999999999875 556666544310 0 011111
Q ss_pred ---------hhHHHHHHHhCCc-----------------c-CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138 119 ---------RGNQVVRELFGED-----------------I-ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ 169 (212)
Q Consensus 119 ---------~~~~~~~~~~g~~-----------------~-~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~ 169 (212)
+..-+.++.+|.. . .-+.|+.+|-.+++.+..||. ++++.++-++....++
T Consensus 446 ~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~ 525 (591)
T KOG0057|consen 446 KYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETERE 525 (591)
T ss_pred hcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHH
Confidence 0111122222211 0 114678899999999999988 5577788888887777
Q ss_pred HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+-+... ..+++++.-.|.+.-. +-||++++++
T Consensus 526 i~~~i~~~-~~~rTvI~IvH~l~ll---~~~DkI~~l~ 559 (591)
T KOG0057|consen 526 ILDMIMDV-MSGRTVIMIVHRLDLL---KDFDKIIVLD 559 (591)
T ss_pred HHHHHHHh-cCCCeEEEEEecchhH---hcCCEEEEEE
Confidence 77776653 4556666668887543 5799999986
No 232
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.19 E-value=3.2e-11 Score=109.31 Aligned_cols=141 Identities=14% Similarity=0.137 Sum_probs=98.2
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc----------ccccCCc----------h
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH----------RAYDVGT----------R 119 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~----------~~~~~~~----------~ 119 (212)
.++++++..++|+++||+|+||||||||+++|+++ |...++...+.. -.|.++. .
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 342 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLD 342 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCc
Confidence 56778899999999999999999999999999986 333343322110 0011100 0
Q ss_pred ---------------------------hHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138 120 ---------------------------GNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAI 162 (212)
Q Consensus 120 ---------------------------~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~ 162 (212)
.....+..++.. ..+ +.|+.+|..++..+..+|+ +++++.+.+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gL 422 (491)
T PRK10982 343 IGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGI 422 (491)
T ss_pred HHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCccc
Confidence 011222333321 111 3466778889988989998 668999999
Q ss_pred hHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 163 WPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 163 ~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.....+.+.+.++......+++-+|.+.+. ..+||+++++.
T Consensus 423 D~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~--~~~~d~v~~l~ 465 (491)
T PRK10982 423 DVGAKFEIYQLIAELAKKDKGIIIISSEMPEL--LGITDRILVMS 465 (491)
T ss_pred ChhHHHHHHHHHHHHHHCCCEEEEECCChHHH--HhhCCEEEEEE
Confidence 99999999999987763456777889998774 57999999885
No 233
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.19 E-value=2e-11 Score=110.98 Aligned_cols=153 Identities=18% Similarity=0.123 Sum_probs=103.9
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------cc-c
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------HR-A 113 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~~-~ 113 (212)
+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .
T Consensus 7 ~~~l~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 7 FDGIGKTFPG----VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred EeeeEEEECC----EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 4455555531 1356788899999999999999999999999999986 33333321110 00 0
Q ss_pred ccCC-------c------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138 114 YDVG-------T------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 114 ~~~~-------~------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-- 153 (212)
|.+. . .....+++.+|.... -+.|+.+|-.++..+..+|+
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI 162 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 1000 0 011223444454211 12367778889989999998
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.++|.....+.+.+.+.......+++-+|.+.+. ..+||+++++.
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~--~~~~d~i~~l~ 214 (501)
T PRK11288 163 AFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEI--FALCDAITVFK 214 (501)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 66899999999999999999887753356777779998764 47899999875
No 234
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.19 E-value=5.4e-11 Score=97.52 Aligned_cols=140 Identities=17% Similarity=0.035 Sum_probs=94.5
Q ss_pred CCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCe---------eeeCCccc------c-ccccCC---------ch-
Q psy17138 66 VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAG---------LINCDQLG------H-RAYDVG---------TR- 119 (212)
Q Consensus 66 ~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~---------vi~~D~i~------~-~~~~~~---------~~- 119 (212)
++++++...+|.+++|+|+||||||||+++|+++-.+ .++...+. + -.|.+. ..
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 3567788899999999999999999999999986322 22221110 0 001100 00
Q ss_pred --------------------hHHHHHHHhCCc----cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHH
Q psy17138 120 --------------------GNQVVRELFGED----IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLIL 167 (212)
Q Consensus 120 --------------------~~~~~~~~~g~~----~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~ 167 (212)
....+++.+|.. .. -+.|+.+|-.++..+..+|+ +++++.+.+++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~ 161 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ 161 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 011223333332 11 12356677888888889988 66889999999999
Q ss_pred HHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 168 AQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 168 ~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+.+.+.+.. .....+++.+|.+.+. ..+||+++++.
T Consensus 162 ~~l~~~l~~~~~~~~~tiii~sH~~~~~--~~~~d~i~~l~ 200 (230)
T TIGR02770 162 ARVLKLLRELRQLFGTGILLITHDLGVV--ARIADEVAVMD 200 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 99999888765 3356888889998764 46899999885
No 235
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.19 E-value=3.2e-11 Score=98.47 Aligned_cols=156 Identities=17% Similarity=0.148 Sum_probs=102.9
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-c
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-R 112 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~ 112 (212)
..+++.+++|...+ ....++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -
T Consensus 12 l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 90 (226)
T cd03248 12 VKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKV 90 (226)
T ss_pred EEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhE
Confidence 45667777664211 12467888999999999999999999999999999987 33333321110 0 0
Q ss_pred cccCCc------hh------------------------HHHHHHHh--CCccC-C------CCCccchHhHHHHhcCChH
Q psy17138 113 AYDVGT------RG------------------------NQVVRELF--GEDIA-L------PDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 113 ~~~~~~------~~------------------------~~~~~~~~--g~~~~-~------~~~~~~r~~l~~~vf~~~~ 153 (212)
.|.+.. .. ....+..+ |.... . +.|+.+|-.++..+..+|+
T Consensus 91 ~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~ 170 (226)
T cd03248 91 SLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQ 170 (226)
T ss_pred EEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 010000 00 01112223 22211 1 2356667788888889988
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++.....+.+.+.++.. ...+++.+|.+.+. ..||+++++.
T Consensus 171 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~---~~~d~i~~l~ 222 (226)
T cd03248 171 VLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTV---ERADQILVLD 222 (226)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHH---HhCCEEEEec
Confidence 56889999999999999999988754 36777879998765 2499999875
No 236
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=4.4e-11 Score=108.84 Aligned_cols=158 Identities=11% Similarity=0.035 Sum_probs=106.0
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC------eeeeCCccc---------c
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA------GLINCDQLG---------H 111 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~------~vi~~D~i~---------~ 111 (212)
..+++.+++|...+ ....++++++..++|++++|+|+||||||||+++|+++-. ..++...+. .
T Consensus 260 l~~~~l~~~~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 260 LEVRNLTAWDPVNP-HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred EEEecCcccccccc-ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 34666666653111 1246788999999999999999999999999999998632 122221110 0
Q ss_pred -ccccC----------C----------------------c----hhHHHHHHHhCCc--cCC------CCCccchHhHHH
Q psy17138 112 -RAYDV----------G----------------------T----RGNQVVRELFGED--IAL------PDGSIDRKKLGA 146 (212)
Q Consensus 112 -~~~~~----------~----------------------~----~~~~~~~~~~g~~--~~~------~~~~~~r~~l~~ 146 (212)
-.|.+ . . .....+++.+|.. ..+ +.|+.+|..++.
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~ 418 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAK 418 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHH
Confidence 00000 0 0 0112334445542 111 346777888998
Q ss_pred HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+..+|+ +++++.+.+++.....+.+.+.++......|++-+|.+.+. ..+||+++++.
T Consensus 419 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~--~~~~d~v~~l~ 479 (506)
T PRK13549 419 CLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEV--LGLSDRVLVMH 479 (506)
T ss_pred HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence 8888888 56899999999999999999887763456788889998764 47899998874
No 237
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.19 E-value=2.1e-11 Score=100.47 Aligned_cols=142 Identities=17% Similarity=0.154 Sum_probs=96.4
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------c-ccccCCc-------h-----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------H-RAYDVGT-------R----- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~-~~~~~~~-------~----- 119 (212)
..++++++...+|++++|+|+||||||||+++|+++ |...++...+. + -.|.+.. .
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl 93 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNI 93 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHH
Confidence 356778889999999999999999999999999986 33333322110 0 0111110 0
Q ss_pred ----------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138 120 ----------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI 174 (212)
Q Consensus 120 ----------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i 174 (212)
.....++.++..-. -+.|+.+|-.++..+..+|+ +++++.+.+++...+.+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l 173 (237)
T TIGR00968 94 AFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL 173 (237)
T ss_pred HhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 01122333333210 12356667788888888888 568889999999999999999
Q ss_pred HhhcCC-CcEEEEEeccccccccccccCeEEEEE
Q psy17138 175 ARLSES-HKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 175 ~~~~~~-~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.... ...+++.+|.+.+. .++||+++.++
T Consensus 174 ~~~~~~~~~tvli~sH~~~~~--~~~~d~i~~l~ 205 (237)
T TIGR00968 174 RKLHDEVHVTTVFVTHDQEEA--MEVADRIVVMS 205 (237)
T ss_pred HHHHHhcCCEEEEEeCCHHHH--HhhcCEEEEEE
Confidence 876532 56788889988653 57899999885
No 238
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.19 E-value=5e-11 Score=98.87 Aligned_cols=154 Identities=15% Similarity=0.121 Sum_probs=100.9
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-------CCeeeeCCccc--------c-
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-------GAGLINCDQLG--------H- 111 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-------g~~vi~~D~i~--------~- 111 (212)
.+++.+++|. + ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +
T Consensus 9 ~~~~l~~~~~--~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 9 EIKNLHASVN--E--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred EEEeEEEEeC--C--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4555555553 1 1367888999999999999999999999999999985 32333221110 0
Q ss_pred cc-ccCCc-------h----------------------------hHHHHHHHhCCc--cC-------CCCCccchHhHHH
Q psy17138 112 RA-YDVGT-------R----------------------------GNQVVRELFGED--IA-------LPDGSIDRKKLGA 146 (212)
Q Consensus 112 ~~-~~~~~-------~----------------------------~~~~~~~~~g~~--~~-------~~~~~~~r~~l~~ 146 (212)
.. |.+.. . .....+..+|.. .. -+.|+.+|..++.
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~ 164 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ 164 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence 00 00000 0 011223333332 11 1335567788888
Q ss_pred HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccc-cCeEEEEE
Q psy17138 147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQ-VHEIWVTF 207 (212)
Q Consensus 147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~-~d~v~~v~ 207 (212)
.+..+|+ +++++.+.+++...+.+.+.+.+.......+++.+|.+... ... ||+++++.
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~--~~~~~d~i~~l~ 226 (252)
T CHL00131 165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLL--DYIKPDYVHVMQ 226 (252)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH--HhhhCCEEEEEe
Confidence 9999998 66889999999999999999987753356777779987654 234 89998874
No 239
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.19 E-value=4.2e-11 Score=108.80 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=99.1
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc----------ccccCC------------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH----------RAYDVG------------ 117 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~----------~~~~~~------------ 117 (212)
.++++++...+|.+++|+|+||||||||+++|.++ |...++...+.. -.|.++
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 347 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHS 347 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCC
Confidence 56778899999999999999999999999999986 333443211100 000000
Q ss_pred ---------------------c----hhHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138 118 ---------------------T----RGNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAI 162 (212)
Q Consensus 118 ---------------------~----~~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~ 162 (212)
. .....++..+|.. ..+ +.|+.+|-.++..+.++|+ +++++.+.+
T Consensus 348 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~L 427 (501)
T PRK11288 348 VADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGI 427 (501)
T ss_pred HHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCC
Confidence 0 0112334445541 111 3467778889989989998 568999999
Q ss_pred hHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 163 WPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 163 ~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++...+.+.+.+.++......+++-+|.+.+. ..+||+++++.
T Consensus 428 D~~~~~~l~~~l~~l~~~g~tviivsHd~~~~--~~~~d~i~~l~ 470 (501)
T PRK11288 428 DVGAKHEIYNVIYELAAQGVAVLFVSSDLPEV--LGVADRIVVMR 470 (501)
T ss_pred CHhHHHHHHHHHHHHHhCCCEEEEECCCHHHH--HhhCCEEEEEE
Confidence 99999999999887763355777779999764 57999999885
No 240
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.19 E-value=5.4e-11 Score=96.68 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=97.8
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------cc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------GH 111 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------~~ 111 (212)
+++..+++... ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+ .+
T Consensus 3 ~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 3 VTNGYFSWGSG---LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeEEecCCC---CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 55666665311 2467778899999999999999999999999999986 3333322111 00
Q ss_pred -ccccCCc------h--------------hHHHHHHHhCCc-----------------c-CCCCCccchHhHHHHhcCCh
Q psy17138 112 -RAYDVGT------R--------------GNQVVRELFGED-----------------I-ALPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 112 -~~~~~~~------~--------------~~~~~~~~~g~~-----------------~-~~~~~~~~r~~l~~~vf~~~ 152 (212)
-.|.+.. . ......+.++.. . .-+.|+.+|-.|+..+..+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 0011110 0 011222222210 0 01235667888998999998
Q ss_pred H--HHHHHHhhhhHHHHHHHHH--HHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 153 D--EMNKLNQAIWPLILAQVKE--EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~--~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+ +++++.+.+++.....+.+ .+.........+++.+|.+... ..||+++++.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~---~~~d~i~~l~ 215 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL---PHADWIIAMK 215 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH---hhCCEEEEec
Confidence 8 5688899999998888876 4444443346778889998654 3699998774
No 241
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=3.1e-11 Score=110.41 Aligned_cols=150 Identities=14% Similarity=0.049 Sum_probs=101.4
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC-Cccc---ccc-ccCC-
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC-DQLG---HRA-YDVG- 117 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~-D~i~---~~~-~~~~- 117 (212)
+++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++. ..++ ... ..+.
T Consensus 4 i~~ls~~~~~----~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 79 (530)
T PRK15064 4 TANITMQFGA----KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEF 79 (530)
T ss_pred EEEEEEEeCC----cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCC
Confidence 4555555531 1367889999999999999999999999999999986 3222321 1110 000 0000
Q ss_pred ----------------------------------------------------chhHHHHHHHhCCcc-C-------CCCC
Q psy17138 118 ----------------------------------------------------TRGNQVVRELFGEDI-A-------LPDG 137 (212)
Q Consensus 118 ----------------------------------------------------~~~~~~~~~~~g~~~-~-------~~~~ 137 (212)
......++..+|... . -+.|
T Consensus 80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG 159 (530)
T PRK15064 80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPG 159 (530)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHH
Confidence 001122334444421 0 1346
Q ss_pred ccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 138 SIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 138 ~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+|..++..+..+|+ +++++.+.++|.....+.+.+.+ . ...+++-+|.+... ..+||+++++.
T Consensus 160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~-~~tiiivsHd~~~~--~~~~d~i~~l~ 226 (530)
T PRK15064 160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--R-NSTMIIISHDRHFL--NSVCTHMADLD 226 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--C-CCeEEEEeCCHHHH--HhhcceEEEEe
Confidence 7778899999999998 67899999999999999988864 2 35677779998763 57899999886
No 242
>PTZ00301 uridine kinase; Provisional
Probab=99.18 E-value=2.5e-11 Score=98.47 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=68.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-c----CC---eeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-L----GA---GLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAI 147 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-l----g~---~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~ 147 (212)
..+|||.|+|||||||+++.|.. + |. .++..|. |......... ...+..-++.-..+|...+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~-----yy~~~~~~~~--~~~~~~~~d~p~a~D~~~l~~~ 75 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDF-----YYRDQSNIPE--SERAYTNYDHPKSLEHDLLTTH 75 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCC-----CccCcccCCH--HHhcCCCCCChhhhCHHHHHHH
Confidence 47999999999999999987752 2 32 2344443 2211100000 0011111111123333333222
Q ss_pred hcCChHHHHHHHhhhhHHHHHHHHHHHHhhc--CCCcEEEEEecccc-ccccccccCeEEEEEeCCCC
Q psy17138 148 VFSNKDEMNKLNQAIWPLILAQVKEEIARLS--ESHKVIVIEAAVLL-SAKWQDQVHEIWVTFIPEQE 212 (212)
Q Consensus 148 vf~~~~~~~~~~~i~~p~~~~~~~~~i~~~~--~~~~~vvie~~~l~-e~~~~~~~d~v~~v~~~~~~ 212 (212)
+ ..+..-..+-.|.+......+..+.. .+.+++++||.+++ ...+.+++|..|+|++|.++
T Consensus 76 l----~~L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~ 139 (210)
T PTZ00301 76 L----RELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDI 139 (210)
T ss_pred H----HHHHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhH
Confidence 2 11111122344555554443332211 45689999999997 45688899999999999874
No 243
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.18 E-value=2.6e-11 Score=101.49 Aligned_cols=153 Identities=17% Similarity=0.089 Sum_probs=99.9
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc-------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG------- 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~------- 110 (212)
++++.+++|.. ...++++++...+|++++|+|+||||||||+++|+++ |...++...+.
T Consensus 12 ~i~~v~~~~~~----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 12 RTENLNVYYGS----FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEeeeEEEECC----EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 35555555531 1356788999999999999999999999999999975 22223321110
Q ss_pred ---cc-cccCC------chhH--------------------HHHHHHhCCc-----cC------CCCCccchHhHHHHhc
Q psy17138 111 ---HR-AYDVG------TRGN--------------------QVVRELFGED-----IA------LPDGSIDRKKLGAIVF 149 (212)
Q Consensus 111 ---~~-~~~~~------~~~~--------------------~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf 149 (212)
+. .|.+. .... ....+..+.. .. -+.|+.+|..++..+.
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~ 167 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA 167 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 00 01010 0000 0111222210 00 1235567778888888
Q ss_pred CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 150 SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 150 ~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+|+ +++++.+.+++.....+.+.+.+...+ ..+++.+|.+.+. ..+||+++++.
T Consensus 168 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~tvi~vtH~~~~~--~~~~d~v~~l~ 224 (264)
T PRK14243 168 VQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQA--ARVSDMTAFFN 224 (264)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CEEEEEecCHHHH--HHhCCEEEEEe
Confidence 8888 568888999999999999999877543 5777779988764 57999999986
No 244
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=5.6e-11 Score=97.45 Aligned_cols=140 Identities=17% Similarity=0.169 Sum_probs=94.1
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-cccCC------chh---
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR-AYDVG------TRG--- 120 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~-~~~~~------~~~--- 120 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .|.+. ...
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 95 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence 356778889999999999999999999999999987 33333322110 00 01110 000
Q ss_pred ------------H---------HHHHHHh--CCcc-------CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 121 ------------N---------QVVRELF--GEDI-------ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 121 ------------~---------~~~~~~~--g~~~-------~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
. ....+.+ |... .-+.|+.+|-.++..+..+|+ +++++.+.+++...+
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 175 (234)
T cd03251 96 IAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175 (234)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 0 0111111 1110 012356678888888989988 568889999999999
Q ss_pred HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+.+... ...+++.+|.+.+. . .||+++++.
T Consensus 176 ~l~~~l~~~~~-~~tii~~sh~~~~~--~-~~d~v~~l~ 210 (234)
T cd03251 176 LVQAALERLMK-NRTTFVIAHRLSTI--E-NADRIVVLE 210 (234)
T ss_pred HHHHHHHHhcC-CCEEEEEecCHHHH--h-hCCEEEEec
Confidence 99999987754 46788889998775 2 399999885
No 245
>PRK13409 putative ATPase RIL; Provisional
Probab=99.18 E-value=2.3e-11 Score=112.42 Aligned_cols=139 Identities=15% Similarity=0.108 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc---cccc-ccCCc----------------hh
Q psy17138 66 VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL---GHRA-YDVGT----------------RG 120 (212)
Q Consensus 66 ~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i---~~~~-~~~~~----------------~~ 120 (212)
++.+++...+|++++|+|+||||||||+++|+++ |...++. .+ ..+. ..+.. ..
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~-~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~ 433 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPEL-KISYKPQYIKPDYDGTVEDLLRSITDDLGSSYY 433 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEee-eEEEecccccCCCCCcHHHHHHHHhhhcChHHH
Confidence 5667788899999999999999999999999986 2222220 01 0000 00000 01
Q ss_pred HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEecc
Q psy17138 121 NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAV 190 (212)
Q Consensus 121 ~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~ 190 (212)
...+++.+|..-. -+.|+.+|..++..+.++|+ +++++.+.+++..+..+.+.++++. .....+++-+|.
T Consensus 434 ~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD 513 (590)
T PRK13409 434 KSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD 513 (590)
T ss_pred HHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 1233444443211 13567789999999999998 5689999999999999999998875 335677777999
Q ss_pred ccccccccccCeEEEEE
Q psy17138 191 LLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 191 l~e~~~~~~~d~v~~v~ 207 (212)
+.++ ..+||++++++
T Consensus 514 ~~~~--~~~aDrvivl~ 528 (590)
T PRK13409 514 IYMI--DYISDRLMVFE 528 (590)
T ss_pred HHHH--HHhCCEEEEEc
Confidence 8775 46899999875
No 246
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.18 E-value=1.3e-11 Score=100.87 Aligned_cols=120 Identities=22% Similarity=0.218 Sum_probs=67.6
Q ss_pred EEEEecCCCCcHHHHHHHHHHcC--------CeeeeCCccccccccCCchhHHH--HHHHhCCccCCCCCccchHhHHHH
Q psy17138 78 IIGLTGGIASGKSTIAKYLETLG--------AGLINCDQLGHRAYDVGTRGNQV--VRELFGEDIALPDGSIDRKKLGAI 147 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~lg--------~~vi~~D~i~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~r~~l~~~ 147 (212)
++||.|+|||||||+++.|.++- ..+++.|.. |.+.. .... .....|. .+.++...+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f----~~~~~-~~~~~~~~~~~g~-----p~~~d~~~l~~~ 70 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF----LYPNK-ELIERGLMDRKGF-----PESYDMEALLKF 70 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc----cCcHH-HHHHhhhhhcCCC-----cccCCHHHHHHH
Confidence 58999999999999999998641 234555542 22111 1110 1111111 123343333211
Q ss_pred hcCChHHHHH-HHhhhhHHHHHHHHHHHHhhc---CCCcEEEEEeccccccc------cccccCeEEEEEeCCC
Q psy17138 148 VFSNKDEMNK-LNQAIWPLILAQVKEEIARLS---ESHKVIVIEAAVLLSAK------WQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 148 vf~~~~~~~~-~~~i~~p~~~~~~~~~i~~~~---~~~~~vvie~~~l~e~~------~~~~~d~v~~v~~~~~ 211 (212)
+ ..+.. ...+..|.+.+...+...... .+.+++++||.+++... +.+++|..|+|++|.+
T Consensus 71 L----~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~ 140 (220)
T cd02025 71 L----KDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADED 140 (220)
T ss_pred H----HHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHH
Confidence 1 11111 123555666666554443221 45679999998777543 7789999999999975
No 247
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.18 E-value=4e-11 Score=99.41 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=100.1
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc-------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG------- 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~------- 110 (212)
.+++.++.|.. ...++++++...+|++++|+|+||||||||+++|+++ |...++...+.
T Consensus 5 ~~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 5 SVKDLDLFYGD----FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred EEEEEEEEECC----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 35555555531 1366788999999999999999999999999999985 22223321110
Q ss_pred ---cc-cccCC------chhHH----------------------HHHHHhCCc-----cC------CCCCccchHhHHHH
Q psy17138 111 ---HR-AYDVG------TRGNQ----------------------VVRELFGED-----IA------LPDGSIDRKKLGAI 147 (212)
Q Consensus 111 ---~~-~~~~~------~~~~~----------------------~~~~~~g~~-----~~------~~~~~~~r~~l~~~ 147 (212)
+. .|.+. ...++ ...+.++.. .. -+.|+.+|..++..
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARA 160 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 00 01111 00100 111122210 00 12356678888888
Q ss_pred hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+..+|+ +++++.+.+++.....+.+.+.+... ...+++.+|.+.+. .++||++++++
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~--~~~~d~v~~l~ 219 (250)
T PRK14240 161 LAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQA--SRISDKTAFFL 219 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHH--HhhCCEEEEEE
Confidence 889988 56888999999999999998887753 45778889988653 57899998885
No 248
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.18 E-value=4.3e-11 Score=99.88 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=93.4
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCee-----------eeCCccc-------cc----cccCC
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGL-----------INCDQLG-------HR----AYDVG 117 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~v-----------i~~D~i~-------~~----~~~~~ 117 (212)
.+++++ ...+|.+++|+|+||||||||+++|+++ |... ++...+. +. .|.++
T Consensus 16 ~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 94 (255)
T cd03236 16 KLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQ 94 (255)
T ss_pred hhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecc
Confidence 445666 4788999999999999999999999987 3221 2221110 00 00000
Q ss_pred ----------------------chhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138 118 ----------------------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI 166 (212)
Q Consensus 118 ----------------------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~ 166 (212)
......+++.+|..-. -+.|+.+|..++..+..+|+ +++++.+.+++..
T Consensus 95 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~ 174 (255)
T cd03236 95 YVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQ 174 (255)
T ss_pred hhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHH
Confidence 0112233444443211 12356677788888888887 5678889999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
...+.+.+++.......+++.+|.+.+. ..+||++++++-
T Consensus 175 ~~~l~~~l~~l~~~~~tIIiiSHd~~~~--~~~ad~i~~l~~ 214 (255)
T cd03236 175 RLNAARLIRELAEDDNYVLVVEHDLAVL--DYLSDYIHCLYG 214 (255)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHH--HHhCCEEEEECC
Confidence 9999888887753356777789998664 468999988853
No 249
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.18 E-value=2.8e-11 Score=102.05 Aligned_cols=153 Identities=15% Similarity=0.117 Sum_probs=100.7
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCcccc---------cccc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLGH---------RAYD 115 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~~---------~~~~ 115 (212)
+.+.+++|...+ ...++++++...+|++++|+|+||||||||+++|.++ |...++...+.. -.|.
T Consensus 5 ~~nls~~~~~~~--~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v 82 (275)
T cd03289 5 VKDLTAKYTEGG--NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVI 82 (275)
T ss_pred EEEEEEEeCCCC--CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEE
Confidence 455556653221 1367889999999999999999999999999999986 434444322210 0111
Q ss_pred CCc--------------------hhHHHHHHHhCCccC------------------CCCCccchHhHHHHhcCChH--HH
Q psy17138 116 VGT--------------------RGNQVVRELFGEDIA------------------LPDGSIDRKKLGAIVFSNKD--EM 155 (212)
Q Consensus 116 ~~~--------------------~~~~~~~~~~g~~~~------------------~~~~~~~r~~l~~~vf~~~~--~~ 155 (212)
+.. ......++.+|..-+ -+.|+.+|..|+..+..+|+ ++
T Consensus 83 ~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illl 162 (275)
T cd03289 83 PQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 162 (275)
T ss_pred CCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 110 011122222222100 13356678888889999888 56
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++.+.+++.....+.+.+.+.. ..+.+++-+|.+... ..||++++++
T Consensus 163 DEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i---~~~dri~vl~ 210 (275)
T cd03289 163 DEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAM---LECQRFLVIE 210 (275)
T ss_pred ECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHH---HhCCEEEEec
Confidence 78888999999999999998764 356777779998543 3499999885
No 250
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.18 E-value=4.1e-11 Score=108.93 Aligned_cols=141 Identities=11% Similarity=0.121 Sum_probs=98.6
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-ccccCCc-----------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-RAYDVGT----------- 118 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~~~~~~~----------- 118 (212)
.++++++...+|++++|+|+||||||||+++|+++ |...+++..+. + -.|.++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 46778899999999999999999999999999986 32333321110 0 0010000
Q ss_pred --------------------------hhHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138 119 --------------------------RGNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAI 162 (212)
Q Consensus 119 --------------------------~~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~ 162 (212)
.....++..+|.. ..+ +.|+.+|..++..+..+|. +++++.+.+
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 0112334445542 111 2366778889999999988 668999999
Q ss_pred hHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 163 WPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 163 ~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+|.....+.+.+.+.......+++-+|.+.+. ..+||+++++.
T Consensus 427 D~~~~~~l~~~l~~~~~~g~tviivtHd~~~~--~~~~d~v~~l~ 469 (501)
T PRK10762 427 DVGAKKEIYQLINQFKAEGLSIILVSSEMPEV--LGMSDRILVMH 469 (501)
T ss_pred CHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHH--HhhCCEEEEEE
Confidence 99999999999988763355777779998764 47899999885
No 251
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=2.2e-11 Score=100.85 Aligned_cols=152 Identities=13% Similarity=0.076 Sum_probs=102.0
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC--------CeeeeCCccc--------cc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG--------AGLINCDQLG--------HR 112 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg--------~~vi~~D~i~--------~~ 112 (212)
+++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++- ...++...+. +.
T Consensus 5 ~~~l~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 5 TTNLNLFYGK----KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred eeeeEEEECC----EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 4555565531 13567788999999999999999999999999999862 1222221110 00
Q ss_pred -cccCCc-------------------------h----hHHHHHHHhCCc-----cC------CCCCccchHhHHHHhcCC
Q psy17138 113 -AYDVGT-------------------------R----GNQVVRELFGED-----IA------LPDGSIDRKKLGAIVFSN 151 (212)
Q Consensus 113 -~~~~~~-------------------------~----~~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf~~ 151 (212)
.|.+.. . .....++.+|.. .. -+.|+.+|..++..+..+
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 010000 0 112334444441 01 123566788888899999
Q ss_pred hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 152 KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
|+ +++++.+.+++.....+.+.+.+... ...+++.+|.+.+. ..+||+++++.
T Consensus 161 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~--~~~~d~i~~l~ 215 (246)
T PRK14269 161 PKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQG--KRVADYTAFFH 215 (246)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHH--HhhCcEEEEEE
Confidence 88 56888999999999999999887654 56788889988764 47899999885
No 252
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.18 E-value=3.3e-11 Score=97.09 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=92.5
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cccc-------cCCc------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HRAY-------DVGT------ 118 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~~~-------~~~~------ 118 (212)
.++++++...+|++++|+|+||||||||+++|+++ |...++...+. +-.| .+..
T Consensus 16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l 95 (204)
T PRK13538 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENL 95 (204)
T ss_pred EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHH
Confidence 57788999999999999999999999999999986 43334332211 0000 0000
Q ss_pred ------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhh
Q psy17138 119 ------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARL 177 (212)
Q Consensus 119 ------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~ 177 (212)
......++.+|..-. -+.|+.+|..++..+..+|+ +++++.+.+++.....+.+.+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 175 (204)
T PRK13538 96 RFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQH 175 (204)
T ss_pred HHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 011233344443211 12356678888889999988 568899999999999999998876
Q ss_pred cCCCcEEEEEeccccccccccccCeEEE
Q psy17138 178 SESHKVIVIEAAVLLSAKWQDQVHEIWV 205 (212)
Q Consensus 178 ~~~~~~vvie~~~l~e~~~~~~~d~v~~ 205 (212)
......+++.+|.+.+. ..+-++++.
T Consensus 176 ~~~~~tiii~sh~~~~i--~~~~~~~~~ 201 (204)
T PRK13538 176 AEQGGMVILTTHQDLPV--ASDKVRKLR 201 (204)
T ss_pred HHCCCEEEEEecChhhh--ccCCceEEe
Confidence 53345777779987663 233345543
No 253
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.18 E-value=8.6e-11 Score=92.69 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=101.1
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------cc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----------HR 112 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----------~~ 112 (212)
.++++++|.. | ..+++++++..++|+++.|+|||||||||++|+|.+. |-..++.-.+. +.
T Consensus 4 f~~V~k~Y~~-g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 4 FENVSKAYPG-G--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred ehhhhhhcCC-C--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 4566677742 2 3588899999999999999999999999999999853 33333221110 00
Q ss_pred c---c-----cCCch---------------------hHHHHHHHhCCcc-------CCCCCccchHhHHHHhcCChHHH-
Q psy17138 113 A---Y-----DVGTR---------------------GNQVVRELFGEDI-------ALPDGSIDRKKLGAIVFSNKDEM- 155 (212)
Q Consensus 113 ~---~-----~~~~~---------------------~~~~~~~~~g~~~-------~~~~~~~~r~~l~~~vf~~~~~~- 155 (212)
+ + .+... .....++..|..- .-+.|..+|..++..+-..|.++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl 160 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL 160 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe
Confidence 0 0 00001 1223333333211 12467888999999999999844
Q ss_pred -HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 156 -NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 156 -~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
++++.-++|....++.+...+...-..+|++.+|...-. .++-++++.+
T Consensus 161 ADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv--~~~~~rvl~l 210 (223)
T COG2884 161 ADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV--NRMRHRVLAL 210 (223)
T ss_pred ecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH--HhccCcEEEE
Confidence 678888999999999999888875567888889976421 2344555543
No 254
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=3.1e-11 Score=100.68 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=101.6
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc-------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG------- 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~------- 110 (212)
.+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++-. ..++...+.
T Consensus 14 ~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 14 KVENLNLWYGE----KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred EEeeeEEEeCC----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 35555555531 135678889999999999999999999999999998621 122221110
Q ss_pred ---cc-cccCCc------hh---------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138 111 ---HR-AYDVGT------RG---------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIV 148 (212)
Q Consensus 111 ---~~-~~~~~~------~~---------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v 148 (212)
+. .|.+.. .. ...+++.+|.. .. -+.|+.+|-.++..+
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 169 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL 169 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHH
Confidence 00 011110 00 11233334321 01 123566788888889
Q ss_pred cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+|+ +++++.+.+++.....+.+.++++.. ...+++.+|.+.+. .++||+++++.
T Consensus 170 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~--~~~~d~i~~l~ 227 (258)
T PRK14268 170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQA--ARISDYTGFFL 227 (258)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHH--HHhCCEEEEEE
Confidence 89988 56888999999999999999987753 46778889998764 46899999885
No 255
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=3e-11 Score=101.52 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=101.9
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-c
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR-A 113 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~-~ 113 (212)
.+.+.+++|... ....++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +. .
T Consensus 9 ~~~nl~~~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 9 KVENVSFSYPNS--ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEeEEEEcCCC--CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 355555555311 12356778899999999999999999999999999987 33333321110 00 1
Q ss_pred ccCC--------chh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138 114 YDVG--------TRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM 155 (212)
Q Consensus 114 ~~~~--------~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~ 155 (212)
|.+. ... ...+++.+|..-+ -+.|+.+|-.++..+..+|+ ++
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL 166 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIF 166 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1111 000 1122233343211 12356678888889999988 56
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++.+.+++...+.+.+.+.+.. .+...+++.+|.+.+. .+||+++++.
T Consensus 167 DEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~---~~~d~v~~l~ 216 (271)
T PRK13632 167 DESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA---ILADKVIVFS 216 (271)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH---hhCCEEEEEE
Confidence 88999999999999999998775 3346788879988664 3699998875
No 256
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.18 E-value=7e-11 Score=96.08 Aligned_cols=153 Identities=18% Similarity=0.100 Sum_probs=99.4
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------c-ccc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------H-RAY 114 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~-~~~ 114 (212)
+.+.+++|... ....++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|
T Consensus 5 ~~~l~~~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 5 FKNVSLRYRPN--LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEecCCC--CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 45555555321 12467888999999999999999999999999999986 43333322110 0 001
Q ss_pred cCCc--------------------hhHHHHHHHhCCc-----------------c-CCCCCccchHhHHHHhcCChH--H
Q psy17138 115 DVGT--------------------RGNQVVRELFGED-----------------I-ALPDGSIDRKKLGAIVFSNKD--E 154 (212)
Q Consensus 115 ~~~~--------------------~~~~~~~~~~g~~-----------------~-~~~~~~~~r~~l~~~vf~~~~--~ 154 (212)
.+.. .......+.++.. . .-+.|+.+|-.++..+..+|+ +
T Consensus 83 ~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll 162 (221)
T cd03244 83 IPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILV 162 (221)
T ss_pred ECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1100 0011111212210 0 012356677888889999988 5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 155 MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 155 ~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.+.+++.....+.+.+++... ...+++.+|.+.+. ..||+++++.
T Consensus 163 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~---~~~d~i~~l~ 211 (221)
T cd03244 163 LDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTI---IDSDRILVLD 211 (221)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHH---hhCCEEEEEE
Confidence 6888999999999999999987754 35778889988664 2489998875
No 257
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.18 E-value=3.4e-11 Score=96.46 Aligned_cols=121 Identities=18% Similarity=0.143 Sum_probs=64.2
Q ss_pred EEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchH----hHHHHhc
Q psy17138 78 IIGLTGGIASGKSTIAKYLETL----GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRK----KLGAIVF 149 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~----~l~~~vf 149 (212)
+|||+|++||||||+++.|.++ ...+++.|...+....... ....+. .+.....++.. .+..+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~l~~l~~ 73 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEEL------EERKNN-NYDHPDAFDFDLLISHLQDLKN 73 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccH------HHhccC-CCCCCCcccHHHHHHHHHHHHC
Confidence 5899999999999999999875 3567777764332221110 011110 11111112211 2222222
Q ss_pred CChHHHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccc-cccccccCeEEEEEeCCC
Q psy17138 150 SNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 150 ~~~~~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~ 211 (212)
.++-..+..+...++.....+ . ..+..++++|++++.+ ..+.++||.+|+|++|.+
T Consensus 74 ~~~~~~p~~d~~~~~~~~~~~-----~-i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~ 130 (198)
T cd02023 74 GKSVEIPVYDFKTHSRLKETV-----T-VYPADVIILEGILALYDKELRDLMDLKIFVDTDAD 130 (198)
T ss_pred CCCEeccccccccCcccCCce-----e-cCCCCEEEEechhhccchhHHhhcCeEEEEECChh
Confidence 211111111111111111111 0 1456799999999986 467789999999999976
No 258
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.18 E-value=3.9e-11 Score=95.50 Aligned_cols=129 Identities=20% Similarity=0.181 Sum_probs=84.5
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------cc-cccCCc--------hh
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------HR-AYDVGT--------RG 120 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~~-~~~~~~--------~~ 120 (212)
.++++++...+|++++|+|+||||||||+++|.++ |...++...+. +. .|.+.. ..
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv 86 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADV 86 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccH
Confidence 56778899999999999999999999999999986 33333321110 00 011110 00
Q ss_pred ---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHH
Q psy17138 121 ---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQV 170 (212)
Q Consensus 121 ---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~ 170 (212)
....++.+|..-. -+.|+.+|..++..+..+|+ +++++.+.+++...+.+
T Consensus 87 ~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 166 (190)
T TIGR01166 87 DQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166 (190)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1122233333211 12356677788888888888 56888899999999999
Q ss_pred HHHHHhhcCCCcEEEEEeccccc
Q psy17138 171 KEEIARLSESHKVIVIEAAVLLS 193 (212)
Q Consensus 171 ~~~i~~~~~~~~~vvie~~~l~e 193 (212)
.+.+.+.......+++.+|.+.+
T Consensus 167 ~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 167 LAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHcCCEEEEEeecccc
Confidence 98888775334577777887643
No 259
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.18 E-value=6.2e-11 Score=94.12 Aligned_cols=152 Identities=19% Similarity=0.143 Sum_probs=96.2
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL-------------- 109 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i-------------- 109 (212)
++++++++... ..+++++.+.++|.+.+++||||+|||||+.++++| |...+++-.+
T Consensus 4 i~nv~K~y~~~----~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 4 IENVSKSYGTK----VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred ehhhhHhhCCE----EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 55566666532 567888999999999999999999999999999986 4444443222
Q ss_pred -------------------ccccccCCc------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138 110 -------------------GHRAYDVGT------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EM 155 (212)
Q Consensus 110 -------------------~~~~~~~~~------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~ 155 (212)
++-.|..+. ...++.++.+...-+ -+.|+.+|..++..+-||-+ ++
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL 159 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL 159 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence 111122221 112333333332211 14678889889855556665 56
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEE
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
+++-+-++..-...+.+.++.+. +-.+.+++.-|....|. .+.|.++-+
T Consensus 160 DEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS--~YsD~IVAl 209 (252)
T COG4604 160 DEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFAS--CYSDHIVAL 209 (252)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHH--hhhhheeee
Confidence 66656556555556666666655 44667777788887764 366777654
No 260
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.17 E-value=1.9e-11 Score=124.69 Aligned_cols=157 Identities=11% Similarity=0.057 Sum_probs=108.3
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------cc
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------RA 113 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~~ 113 (212)
..+++.+++|+. ....+++++++...+|+++||+|+|||||||++|+|.++ |...+++..+.. --
T Consensus 1938 L~v~nLsK~Y~~--~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1938 LRLNELTKVYSG--TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred EEEEEEEEEECC--CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 345566666631 123478889999999999999999999999999999986 444444322210 00
Q ss_pred ccCCc-------h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138 114 YDVGT-------R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN 156 (212)
Q Consensus 114 ~~~~~-------~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~ 156 (212)
|.++. . ....+++.+|..-. -+.|+.+|..++..+..+|+ +++
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLD 2095 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD 2095 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 11110 0 01122333443211 12456677788888999998 668
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.+.++|..++.+++.|.+.....+.+++.+|.+.++ ..+||+++++.
T Consensus 2096 EPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~--e~lcDrV~IL~ 2144 (2272)
T TIGR01257 2096 EPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEEC--EALCTRLAIMV 2144 (2272)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 99999999999999999988754467889999999886 47999998875
No 261
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.17 E-value=4.3e-11 Score=100.45 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=98.1
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------------cc---cccCC
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------------HR---AYDVG 117 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------------~~---~~~~~ 117 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. .+ .+.+.
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 105 (268)
T PRK10419 26 TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPR 105 (268)
T ss_pred eeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCC
Confidence 357888999999999999999999999999999986 32233322110 00 01000
Q ss_pred ch----------------------hHHHHHHHhCCc--cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138 118 TR----------------------GNQVVRELFGED--IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL 165 (212)
Q Consensus 118 ~~----------------------~~~~~~~~~g~~--~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~ 165 (212)
.. ....++..+|.. .. -+.|+.+|-.++..+..+|+ +++++.+.+++.
T Consensus 106 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~ 185 (268)
T PRK10419 106 KTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV 185 (268)
T ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 00 112333444432 11 13466778889999999998 568899999999
Q ss_pred HHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 166 ILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 166 ~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+.+.+.++++. .....+++.+|.+.+. ..+||+++++.
T Consensus 186 ~~~~~~~~l~~~~~~~~~tiiivsH~~~~i--~~~~d~i~~l~ 226 (268)
T PRK10419 186 LQAGVIRLLKKLQQQFGTACLFITHDLRLV--ERFCQRVMVMD 226 (268)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEECCHHHH--HHhCCEEEEEE
Confidence 9999988888765 3356778879998764 46899999885
No 262
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.17 E-value=2.3e-11 Score=109.99 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=103.4
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc--cccc-cccC---
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ--LGHR-AYDV--- 116 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~--i~~~-~~~~--- 116 (212)
.+++..+++.. +.....++++++...+|.++||+|+||||||||+++|+++ |...++... +... .+.+
T Consensus 23 ~lknL~~~~~~-~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lT 101 (549)
T PRK13545 23 KLKDLFFRSKD-GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLT 101 (549)
T ss_pred EEEEEEEecCC-CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCc
Confidence 35555444432 1122357888999999999999999999999999999987 322332211 0000 0000
Q ss_pred ------------C--ch----hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138 117 ------------G--TR----GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ 169 (212)
Q Consensus 117 ------------~--~~----~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~ 169 (212)
+ .. ....+++.+|.... -+.|+.+|..|+..+..+|+ +++++.+.++|...+.
T Consensus 102 V~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~ 181 (549)
T PRK13545 102 GIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKK 181 (549)
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 0 00 01123334443211 13467778889988999998 5688899999999999
Q ss_pred HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.+.++......+++.+|.+.+. ..+||+++++.
T Consensus 182 LlelL~el~~~G~TIIIVSHdl~~i--~~l~DrIivL~ 217 (549)
T PRK13545 182 CLDKMNEFKEQGKTIFFISHSLSQV--KSFCTKALWLH 217 (549)
T ss_pred HHHHHHHHHhCCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence 9998887653456788889998653 57899998875
No 263
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=3.3e-11 Score=100.49 Aligned_cols=153 Identities=18% Similarity=0.131 Sum_probs=100.9
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc-------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG------- 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~------- 110 (212)
.+++.+++|.. ...++++++...+|++++|+|+||||||||+++|+++. ...++...+.
T Consensus 14 ~i~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 14 QINGMNLWYGQ----HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred EEeeEEEEECC----eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 45566665531 13567788899999999999999999999999999752 2222221110
Q ss_pred ---cc-cccCCc------hh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHH
Q psy17138 111 ---HR-AYDVGT------RG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAI 147 (212)
Q Consensus 111 ---~~-~~~~~~------~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~ 147 (212)
.. .|.+.. .. ....++.+|.. .+ -+.|+.+|..|+..
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lara 169 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARA 169 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 00 011100 00 01112233321 01 12356678888888
Q ss_pred hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+..+|+ +++++.+.+++.....+.+.+.+... ...+++.+|.+.+. .++||++++++
T Consensus 170 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~--~~~~d~i~~l~ 228 (259)
T PRK14274 170 LATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQA--ARVSDQTAFFY 228 (259)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHH--HHhCCEEEEEE
Confidence 999988 56889999999999999999988754 46778889988653 47899999885
No 264
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=4.7e-11 Score=99.02 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=99.2
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc--------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG-------- 110 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~-------- 110 (212)
+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+.
T Consensus 7 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 7 AQDVNIYYGD----KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EeeeEEEECC----EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 4455555531 1357788999999999999999999999999999986 22233322211
Q ss_pred --c-ccccCC-------chhHHHH----------------------HHHhCC-----ccC------CCCCccchHhHHHH
Q psy17138 111 --H-RAYDVG-------TRGNQVV----------------------RELFGE-----DIA------LPDGSIDRKKLGAI 147 (212)
Q Consensus 111 --~-~~~~~~-------~~~~~~~----------------------~~~~g~-----~~~------~~~~~~~r~~l~~~ 147 (212)
+ -.|.+. ...++.+ ...++. ... -+.|+.+|-.++..
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 0 001111 0111100 111111 000 12355667788888
Q ss_pred hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.++|+ +++++.+.+++.....+.+.+++... ...+++.+|.+.+. .++||+++++.
T Consensus 163 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~--~~~~d~i~~l~ 221 (252)
T PRK14272 163 LAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQA--ARVSDTTSFFL 221 (252)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHH--HHhCCEEEEEE
Confidence 889988 56888999999999999999887754 46788889988764 46899999885
No 265
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=6.1e-11 Score=98.42 Aligned_cols=140 Identities=16% Similarity=0.094 Sum_probs=93.8
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCcccc-----------ccccCC------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLGH-----------RAYDVG------ 117 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~~-----------~~~~~~------ 117 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+.. -.|.+.
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (251)
T PRK14270 19 ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP 98 (251)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC
Confidence 56778899999999999999999999999999986 333333222110 001110
Q ss_pred chh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138 118 TRG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAI 162 (212)
Q Consensus 118 ~~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~ 162 (212)
... .....+.+|.. .. -+.|+.+|-.++..+..+|+ +++++.+.+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L 178 (251)
T PRK14270 99 MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSAL 178 (251)
T ss_pred CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 000 01122333320 00 12345567788888888887 568888999
Q ss_pred hHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 163 WPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 163 ~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.....+.+.+++...+ ..+++.+|.+.+. ..+||++++++
T Consensus 179 D~~~~~~l~~~L~~~~~~-~tiiivsH~~~~~--~~~~d~v~~l~ 220 (251)
T PRK14270 179 DPISTLKIEDLMVELKKE-YTIVIVTHNMQQA--SRVSDYTAFFL 220 (251)
T ss_pred CHHHHHHHHHHHHHHHhC-CeEEEEEcCHHHH--HHhcCEEEEEE
Confidence 999999999998877543 5777778988653 57899999885
No 266
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.16 E-value=2.6e-11 Score=110.72 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=102.3
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc-----------
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL----------- 109 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i----------- 109 (212)
.-.+++++++|.. .....++++++..++|..++|+|+||||||||+++|.++ |...++...+
T Consensus 320 ~i~~~~v~f~y~~--~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 320 SLEFSGLSVAYPG--RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred eEEEEEEEEECCC--CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 3456666666642 222357888999999999999999999999999999986 3333433221
Q ss_pred ----ccccccCC---------------chhHHHHHHHhCC-----------cc-------CCCCCccchHhHHHHhcCCh
Q psy17138 110 ----GHRAYDVG---------------TRGNQVVRELFGE-----------DI-------ALPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 110 ----~~~~~~~~---------------~~~~~~~~~~~g~-----------~~-------~~~~~~~~r~~l~~~vf~~~ 152 (212)
.++.+... .......++..+. +. .-+.|+.+|-.+++.+..+|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 11111000 0111111111111 00 01346778889999999999
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
+ +++++++.+++...+.+.+.+.+.. ..+++++-+|-+.. ...||+++++
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~---~~~~d~i~~l 529 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL---AERADRIVVL 529 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH---HHhCCEEEeC
Confidence 8 6688999999999999998888764 45677777998744 3579998763
No 267
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.16 E-value=2.5e-11 Score=102.81 Aligned_cols=126 Identities=21% Similarity=0.192 Sum_probs=71.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHcC--------CeeeeCCccccccccCCchhHHHHHHHhCCc-cCCCCCccchHh
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETLG--------AGLINCDQLGHRAYDVGTRGNQVVRELFGED-IALPDGSIDRKK 143 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~lg--------~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~r~~ 143 (212)
...+++|||.|+|||||||++++|.++- +.++..|. |.... ......|.. .......++...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~-----f~~~~----~~l~~~g~~~~~g~P~s~D~~~ 129 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG-----FLHPN----QVLKERNLMKKKGFPESYDMHR 129 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc-----ccccH----HHHHHcCCccccCCChhccHHH
Confidence 4568999999999999999999997641 22344443 21111 111112210 000112334333
Q ss_pred HHHHhcCChHHHHHHH-hhhhHHHHHHHHHHHHhh-c--CCCcEEEEEecccccc-c----------cccccCeEEEEEe
Q psy17138 144 LGAIVFSNKDEMNKLN-QAIWPLILAQVKEEIARL-S--ESHKVIVIEAAVLLSA-K----------WQDQVHEIWVTFI 208 (212)
Q Consensus 144 l~~~vf~~~~~~~~~~-~i~~p~~~~~~~~~i~~~-~--~~~~~vvie~~~l~e~-~----------~~~~~d~v~~v~~ 208 (212)
+...+ ..+..-. .+..|.+.+...++.... . .+.+++++||.+++.. . .+++||..|+|++
T Consensus 130 l~~~L----~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa 205 (290)
T TIGR00554 130 LVKFL----SDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDA 205 (290)
T ss_pred HHHHH----HHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEEC
Confidence 32111 1111111 255677777665554322 1 4678999999987742 2 2579999999999
Q ss_pred CCC
Q psy17138 209 PEQ 211 (212)
Q Consensus 209 ~~~ 211 (212)
|++
T Consensus 206 ~~d 208 (290)
T TIGR00554 206 EED 208 (290)
T ss_pred CHH
Confidence 975
No 268
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=4.6e-11 Score=99.74 Aligned_cols=155 Identities=17% Similarity=0.085 Sum_probs=103.4
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----------CCeeeeCCccc-----
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----------GAGLINCDQLG----- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----------g~~vi~~D~i~----- 110 (212)
..+++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |..+++...+.
T Consensus 11 i~~~~~~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 11 FNISRLYLYIND----KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred eeeeeEEEecCC----ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 456777777742 1357888999999999999999999999999999986 21112111110
Q ss_pred ---ccc-c-------cCCchh----------------------HHHHHHHhCCc-----cCC------CCCccchHhHHH
Q psy17138 111 ---HRA-Y-------DVGTRG----------------------NQVVRELFGED-----IAL------PDGSIDRKKLGA 146 (212)
Q Consensus 111 ---~~~-~-------~~~~~~----------------------~~~~~~~~g~~-----~~~------~~~~~~r~~l~~ 146 (212)
..+ | .++... .....+.+|.. ..+ +.|+.+|-.|++
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 166 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIAR 166 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHH
Confidence 000 0 011000 11222334431 111 224566778888
Q ss_pred HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
.+..+|+ +++++.+.+++...+.+.+.+.+... ...+++.+|.+... ..+||++++++-
T Consensus 167 al~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~--~~~~d~v~~l~~ 227 (257)
T PRK14246 167 ALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQV--ARVADYVAFLYN 227 (257)
T ss_pred HHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHH--HHhCCEEEEEEC
Confidence 9999988 56888999999999999999987753 36788889998654 468999998863
No 269
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.16 E-value=4.8e-11 Score=95.62 Aligned_cols=137 Identities=15% Similarity=0.035 Sum_probs=90.0
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------c-ccccCC-------ch----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------H-RAYDVG-------TR---- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~-~~~~~~-------~~---- 119 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+. ..
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 93 (198)
T TIGR01189 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALEN 93 (198)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHH
Confidence 356778899999999999999999999999999986 33333322110 0 001110 00
Q ss_pred -------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhh
Q psy17138 120 -------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARL 177 (212)
Q Consensus 120 -------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~ 177 (212)
.....++.+|..-+ -+.|+.+|-.++..+..+|+ +++++.+.+++.....+.+.+.+.
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 173 (198)
T TIGR01189 94 LHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173 (198)
T ss_pred HHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 11222333333211 02356667788888888888 568889999999999999999876
Q ss_pred cCCCcEEEEEeccccccccccccCeEE
Q psy17138 178 SESHKVIVIEAAVLLSAKWQDQVHEIW 204 (212)
Q Consensus 178 ~~~~~~vvie~~~l~e~~~~~~~d~v~ 204 (212)
......+++.+|...+. .|++++
T Consensus 174 ~~~~~tii~~sH~~~~~----~~~~~~ 196 (198)
T TIGR01189 174 LARGGIVLLTTHQDLGL----VEAREL 196 (198)
T ss_pred HhCCCEEEEEEcccccc----cceEEe
Confidence 43345777778877543 567665
No 270
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=6.1e-11 Score=98.57 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=100.9
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc-------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG------- 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~------- 110 (212)
.+.+.+++|.. ...++++++...+|++++|+|+||||||||+++|+++- ...++...+.
T Consensus 9 ~~~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 9 ETENLNLFYTD----FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred EEeeeEEEeCC----ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 35555555531 13568889999999999999999999999999999752 2223221110
Q ss_pred ---cc-cccCC------chhH----------------------HHHHHHhCC-----ccC------CCCCccchHhHHHH
Q psy17138 111 ---HR-AYDVG------TRGN----------------------QVVRELFGE-----DIA------LPDGSIDRKKLGAI 147 (212)
Q Consensus 111 ---~~-~~~~~------~~~~----------------------~~~~~~~g~-----~~~------~~~~~~~r~~l~~~ 147 (212)
.. .|.++ .... ....+.+|. ... -+.|+.+|-.++..
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lara 164 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIART 164 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 00 01110 0000 111122221 000 12356678888989
Q ss_pred hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+..+|+ +++++.+.+++.....+.+.+.+... ...+++-+|.+.+. ..+||+++++.
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~~--~~~~d~i~~l~ 223 (254)
T PRK14273 165 LAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQA--GRISDRTAFFL 223 (254)
T ss_pred HHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 999998 56889999999999999999988753 46777789988764 46899998874
No 271
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.16 E-value=6.5e-11 Score=98.88 Aligned_cols=142 Identities=13% Similarity=0.045 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC--------CeeeeCCccc-------------c-ccccCC----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG--------AGLINCDQLG-------------H-RAYDVG---- 117 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg--------~~vi~~D~i~-------------~-~~~~~~---- 117 (212)
..++++++...+|.+++|+|+||||||||+++|+++- ...++...+. + -.|.+.
T Consensus 18 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (262)
T PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNL 97 (262)
T ss_pred EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccccc
Confidence 3567788999999999999999999999999999862 1222221110 0 011111
Q ss_pred ---chh-----------------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138 118 ---TRG-----------------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN 156 (212)
Q Consensus 118 ---~~~-----------------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~ 156 (212)
... ....++.+|..-. -+.|+.+|..++..+..+|+ +++
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 177 (262)
T PRK09984 98 VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD 177 (262)
T ss_pred ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEec
Confidence 000 1122233333211 13356678888888999998 568
Q ss_pred HHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 157 KLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.+.+++...+.+.+.+.+.. .....+++.+|.+.+. ..+||+++++.
T Consensus 178 EPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~--~~~~d~i~~l~ 227 (262)
T PRK09984 178 EPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYA--LRYCERIVALR 227 (262)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 8999999999999999998875 3356788889998763 46899998875
No 272
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.16 E-value=8.9e-11 Score=94.64 Aligned_cols=155 Identities=15% Similarity=0.054 Sum_probs=100.5
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR- 112 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~- 112 (212)
..+.+..++|... ....++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +.
T Consensus 7 l~~~~l~~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 7 IEVENLSVRYAPD--LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred EEEEEEEEEeCCC--CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 4466666666421 12467788999999999999999999999999999986 33334322110 00
Q ss_pred cccCC------chhH-----------HHHHHHhCC--cc-CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHH
Q psy17138 113 AYDVG------TRGN-----------QVVRELFGE--DI-ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQV 170 (212)
Q Consensus 113 ~~~~~------~~~~-----------~~~~~~~g~--~~-~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~ 170 (212)
.|.+. .... ..+...+.. .. .-+.|+.+|-.++..+..+|+ +++++.+.+++...+.+
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l 164 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI 164 (207)
T ss_pred EEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHH
Confidence 01110 0111 111111111 00 012356677888888888888 56788889999999999
Q ss_pred HHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 171 KEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 171 ~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+... ...+++-+|.+.+. . .||+++++.
T Consensus 165 ~~~l~~~~~-~~tiii~th~~~~~--~-~~d~v~~l~ 197 (207)
T cd03369 165 QKTIREEFT-NSTILTIAHRLRTI--I-DYDKILVMD 197 (207)
T ss_pred HHHHHHhcC-CCEEEEEeCCHHHH--h-hCCEEEEEE
Confidence 999887643 56777779988764 2 489998875
No 273
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.16 E-value=2.5e-11 Score=111.98 Aligned_cols=156 Identities=16% Similarity=0.149 Sum_probs=104.4
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
-.+++.+++|... ....++++++..++|.+++|+|+||||||||+++|.++ |...++.-.+.
T Consensus 339 i~~~~v~f~y~~~--~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 339 LTLNNVSFTYPDQ--PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred EEEEEEEEECCCC--CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 5566777766421 12357889999999999999999999999999999986 44444432211
Q ss_pred ----cccc-------------cCC--chhHHHHHHHhCCcc-------C----------CCCCccchHhHHHHhcCChH-
Q psy17138 111 ----HRAY-------------DVG--TRGNQVVRELFGEDI-------A----------LPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 111 ----~~~~-------------~~~--~~~~~~~~~~~g~~~-------~----------~~~~~~~r~~l~~~vf~~~~- 153 (212)
++.+ .+. .......++..|..- + -+.|+.+|-.+++.+.++|+
T Consensus 417 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~i 496 (574)
T PRK11160 417 SVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL 496 (574)
T ss_pred eEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 1110 010 011122222222110 0 13467788899999999998
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
+++++.+.+++...+.+.+.+.+.. ..+++++-+|-+... ..||++++++-
T Consensus 497 lilDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~---~~~d~i~~l~~ 548 (574)
T PRK11160 497 LLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGL---EQFDRICVMDN 548 (574)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHH---HhCCEEEEEeC
Confidence 5588999999999999998887764 356777779987543 46999998863
No 274
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.16 E-value=1.6e-11 Score=115.92 Aligned_cols=153 Identities=21% Similarity=0.165 Sum_probs=102.1
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..+++++++|... .-..++++++..++|+.++|+|+||||||||+++|.++ |...++.-.+.
T Consensus 478 I~~~~vsf~y~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 478 VELRNITFGYSPL--EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred EEEEEEEEecCCC--CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 4567777777522 22467889999999999999999999999999999987 44444432210
Q ss_pred ----ccc----------c---cCC--chhHHHHHH---------Hh--CCcc-C------CCCCccchHhHHHHhcCChH
Q psy17138 111 ----HRA----------Y---DVG--TRGNQVVRE---------LF--GEDI-A------LPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 111 ----~~~----------~---~~~--~~~~~~~~~---------~~--g~~~-~------~~~~~~~r~~l~~~vf~~~~ 153 (212)
++. . .+. .....+.++ .+ |.+. . -+.|+.+|-.+++.+.++|+
T Consensus 556 ~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ 635 (710)
T TIGR03796 556 AMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS 635 (710)
T ss_pred eEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 111 0 000 011111111 11 1110 0 13467788899999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+-+++...+.+.+.+.+ ..+++++-+|-+.. ...||++++++
T Consensus 636 iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~---i~~~D~Iivl~ 685 (710)
T TIGR03796 636 ILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST---IRDCDEIIVLE 685 (710)
T ss_pred EEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH---HHhCCEEEEEe
Confidence 66888999999999999888875 24667776888744 35699999886
No 275
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.16 E-value=8.8e-11 Score=105.21 Aligned_cols=153 Identities=19% Similarity=0.155 Sum_probs=101.4
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..+++.+++|. -.++++++++...+|++.+|+|.||||||||+|+|++. |...+++..+.
T Consensus 9 l~~~~i~K~Fg----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 9 LELRGISKSFG----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeecceEEcC----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 45888899997 44899999999999999999999999999999999975 44444443321
Q ss_pred -----------------------cccccC-C----c---hhHHHHHHHhCCccCCCC--------CccchHhHHHHhcCC
Q psy17138 111 -----------------------HRAYDV-G----T---RGNQVVRELFGEDIALPD--------GSIDRKKLGAIVFSN 151 (212)
Q Consensus 111 -----------------------~~~~~~-~----~---~~~~~~~~~~g~~~~~~~--------~~~~r~~l~~~vf~~ 151 (212)
++...+ + . .....++...|.... .+ ++.+.-.++..+..+
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARALSFD 163 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHhcC
Confidence 110000 0 0 012233333343210 11 123334556666666
Q ss_pred hH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 152 KD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+. .++++++-+.+.-.+.+.+.+++++ .+..++++ +|-|.|. .++||++.++.
T Consensus 164 arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~I-SHrl~Ei--~~i~DritVlR 219 (500)
T COG1129 164 ARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYI-SHRLDEV--FEIADRITVLR 219 (500)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE-cCcHHHH--HHhcCEEEEEe
Confidence 65 4577777788888888888888888 55556666 9998774 68999998763
No 276
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.15 E-value=2.7e-11 Score=107.46 Aligned_cols=148 Identities=20% Similarity=0.165 Sum_probs=99.8
Q ss_pred hhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------cc-ccccCCc----
Q psy17138 57 RELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------GH-RAYDVGT---- 118 (212)
Q Consensus 57 ~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------~~-~~~~~~~---- 118 (212)
..+|.....+++++|....|..+||+||||||||||+|+|.+. |...+|+-.+ ++ --|.|+.
T Consensus 343 ~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF 422 (580)
T COG4618 343 APPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELF 422 (580)
T ss_pred cCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceec
Confidence 4456565667889999999999999999999999999999974 5555553222 11 1244432
Q ss_pred -hhHHHHHHHhCCcc------------------------C----------CCCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138 119 -RGNQVVRELFGEDI------------------------A----------LPDGSIDRKKLGAIVFSNKD--EMNKLNQA 161 (212)
Q Consensus 119 -~~~~~~~~~~g~~~------------------------~----------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i 161 (212)
....+-+..|+.+. + -+.|+.+|-.|++.+|.||. .++++++-
T Consensus 423 ~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsN 502 (580)
T COG4618 423 DGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502 (580)
T ss_pred CCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 11222222333211 0 13467889999999999998 56889999
Q ss_pred hhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 162 IWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 162 ~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++..-...+.+-|.+.+....++++-+|=.- ....+|++.++.
T Consensus 503 LD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs---~L~~~Dkilvl~ 545 (580)
T COG4618 503 LDSEGEAALAAAILAAKARGGTVVVIAHRPS---ALASVDKILVLQ 545 (580)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEecCHH---HHhhcceeeeec
Confidence 9988888888888877744445555577532 235678887653
No 277
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=3.3e-11 Score=99.16 Aligned_cols=141 Identities=14% Similarity=0.130 Sum_probs=97.4
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------------ccc-ccCCch------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------------HRA-YDVGTR------ 119 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------------~~~-~~~~~~------ 119 (212)
.++++++...+|++++|+|+||||||||+++|+++ |...++...+. ++. +.+...
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 57778899999999999999999999999999986 43334322110 000 000000
Q ss_pred ---------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHH
Q psy17138 120 ---------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIA 175 (212)
Q Consensus 120 ---------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~ 175 (212)
.....++.+|..-. -+.|+.+|..|+..+..+|+ +++++.+.+++...+.+.+.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 173 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHH
Confidence 01122333443211 13466778889999999988 5688899999999999999988
Q ss_pred hhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 176 RLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 176 ~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.. .....+++.+|.+.+. .++||+++++.
T Consensus 174 ~~~~~~~~tili~tH~~~~~--~~~~d~i~~l~ 204 (235)
T cd03299 174 KIRKEFGVTVLHVTHDFEEA--WALADKVAIML 204 (235)
T ss_pred HHHHhcCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 765 3256788889988763 46899998875
No 278
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.15 E-value=1.1e-10 Score=101.42 Aligned_cols=143 Identities=20% Similarity=0.174 Sum_probs=100.9
Q ss_pred ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccc------------------cccccCC--
Q psy17138 62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLG------------------HRAYDVG-- 117 (212)
Q Consensus 62 ~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~------------------~~~~~~~-- 117 (212)
.+++++++++..++|+.+||+|.|||||||+..+|.+| |...|++..+. .+.|..-
T Consensus 299 ~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsP 378 (534)
T COG4172 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSP 378 (534)
T ss_pred heEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCc
Confidence 34678889999999999999999999999999999986 55556544431 1111000
Q ss_pred ---------------------chh---HHHHHHHhCCccC--------CCCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138 118 ---------------------TRG---NQVVRELFGEDIA--------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIW 163 (212)
Q Consensus 118 ---------------------~~~---~~~~~~~~g~~~~--------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~ 163 (212)
... .....+..|.+-- -+.|+.+|-.++..+.-.|. +++++++.++
T Consensus 379 RmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD 458 (534)
T COG4172 379 RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458 (534)
T ss_pred ccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence 000 1111122232210 14678889899988888887 5688899999
Q ss_pred HHHHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 164 PLILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 164 p~~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+...+-+.+++++ .+-.+.|| +|.|.- .+.+||+|+++.
T Consensus 459 ~SVQaQvv~LLr~LQ~k~~LsYLFI-SHDL~V--vrAl~~~viVm~ 501 (534)
T COG4172 459 RSVQAQVLDLLRDLQQKHGLSYLFI-SHDLAV--VRALCHRVIVMR 501 (534)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEE-eccHHH--HHHhhceEEEEe
Confidence 999999999988887 44568888 888854 467999999874
No 279
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.15 E-value=2.1e-11 Score=112.55 Aligned_cols=156 Identities=16% Similarity=0.189 Sum_probs=103.7
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------ 109 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------ 109 (212)
..+++.++++... .-..++++++..++|..++|+|+||||||||+++|.++ |...++...+
T Consensus 342 i~~~~vsf~y~~~--~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 419 (582)
T PRK11176 342 IEFRNVTFTYPGK--EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQV 419 (582)
T ss_pred EEEEEEEEecCCC--CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhc
Confidence 5566666666321 22356788999999999999999999999999999987 4334433221
Q ss_pred ---cccc------------cc-CC---chhHHHHHHHhC---------Ccc---C------CCCCccchHhHHHHhcCCh
Q psy17138 110 ---GHRA------------YD-VG---TRGNQVVRELFG---------EDI---A------LPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 110 ---~~~~------------~~-~~---~~~~~~~~~~~g---------~~~---~------~~~~~~~r~~l~~~vf~~~ 152 (212)
.++. +. +. ........+..| ... . -+.|+.+|-.+++.+..+|
T Consensus 420 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~ 499 (582)
T PRK11176 420 ALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_pred eEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 1111 10 10 011111111111 111 0 1346778889999999999
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
+ +++++++.+++.....+.+.+.+.. ..+++++-+|-+.. ...||++++++-
T Consensus 500 ~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~---~~~~D~Ii~l~~ 553 (582)
T PRK11176 500 PILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST---IEKADEILVVED 553 (582)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHH---HHhCCEEEEEEC
Confidence 8 5688999999999999998887764 34677777898743 467999998863
No 280
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=6.5e-11 Score=98.07 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=99.0
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc--------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG-------- 110 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~-------- 110 (212)
+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++.. ..++...+.
T Consensus 6 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 6 IENLDLFYGE----NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred EeccEEEECC----eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 4455555531 236788899999999999999999999999999997622 122221110
Q ss_pred -c-ccccCCc------hhH----------------------HHHHHHhCCc-----cC------CCCCccchHhHHHHhc
Q psy17138 111 -H-RAYDVGT------RGN----------------------QVVRELFGED-----IA------LPDGSIDRKKLGAIVF 149 (212)
Q Consensus 111 -~-~~~~~~~------~~~----------------------~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf 149 (212)
+ -.|.+.. ... ....+.+|.. .. -+.|+.+|..|+..+.
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA 161 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence 0 0011100 000 0111222210 00 1235666778888899
Q ss_pred CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 150 SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 150 ~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+|+ +++++.+.+++.....+.+.+.++..+ ..+++.+|.+.+ +..+||+++++.
T Consensus 162 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh~~~~--~~~~~d~i~~l~ 218 (249)
T PRK14253 162 MEPDVILMDEPTSALDPIATHKIEELMEELKKN-YTIVIVTHSMQQ--ARRISDRTAFFL 218 (249)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CeEEEEecCHHH--HHHhCCEEEEEE
Confidence 9888 568888999999999999999887543 677777998865 357899999875
No 281
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.15 E-value=4.4e-11 Score=108.62 Aligned_cols=153 Identities=12% Similarity=0.005 Sum_probs=103.6
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-------eeeeCCccc---------c-
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-------GLINCDQLG---------H- 111 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-------~vi~~D~i~---------~- 111 (212)
+++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++-. ..++...+. +
T Consensus 4 i~~l~~~~~~----~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 4 MKGIVKTFGG----VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEeEEEEeCC----eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 4555555531 236788899999999999999999999999999998632 122221110 0
Q ss_pred ccccCCc--------------------------------hhHHHHHHHhCCccC--------CCCCccchHhHHHHhcCC
Q psy17138 112 RAYDVGT--------------------------------RGNQVVRELFGEDIA--------LPDGSIDRKKLGAIVFSN 151 (212)
Q Consensus 112 ~~~~~~~--------------------------------~~~~~~~~~~g~~~~--------~~~~~~~r~~l~~~vf~~ 151 (212)
-.|.+.. .....+++.+|.... -+.|+.+|..++..+..+
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~ 159 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhC
Confidence 0010000 011233444554211 123567788899899999
Q ss_pred hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 152 KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
|+ +++++.+.++|.....+.+.++++......+++-+|.+.+. ..+||+++++.
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~--~~~~d~i~~l~ 215 (500)
T TIGR02633 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEV--KAVCDTICVIR 215 (500)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH--HHhCCEEEEEe
Confidence 98 56899999999999999999988764455777779998764 47899999885
No 282
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.15 E-value=9e-11 Score=95.31 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=86.0
Q ss_pred CCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCee-eeCCcc--cccc-ccCCchhHH--------------
Q psy17138 66 VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGL-INCDQL--GHRA-YDVGTRGNQ-------------- 122 (212)
Q Consensus 66 ~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~v-i~~D~i--~~~~-~~~~~~~~~-------------- 122 (212)
++++++...+|.+++|+|+||||||||+++|+++ |... ++...+ .... +.+.-...+
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~ 82 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGD 82 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHH
Confidence 5678889999999999999999999999999986 3332 333221 1111 111101000
Q ss_pred ----HHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEec
Q psy17138 123 ----VVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAA 189 (212)
Q Consensus 123 ----~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~ 189 (212)
.+...++.+.. -+.|+.+|-.++..+..+|+ +++++.+-+++.....+.+.+.+...+ ..+++.+|
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~-~~ii~vsH 161 (213)
T PRK15177 83 EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ-KGLIVLTH 161 (213)
T ss_pred HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC-CcEEEEEC
Confidence 01111111100 12355667778888888887 456666667888888888776432222 34667799
Q ss_pred cccccccccccCeEEEEE
Q psy17138 190 VLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 190 ~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+. ..+||+++++.
T Consensus 162 ~~~~~--~~~~d~i~~l~ 177 (213)
T PRK15177 162 NPRLI--KEHCHAFGVLL 177 (213)
T ss_pred CHHHH--HHhcCeeEEEE
Confidence 98763 46899998875
No 283
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=6.3e-11 Score=110.61 Aligned_cols=150 Identities=15% Similarity=0.082 Sum_probs=101.0
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc-c---cccc------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ-L---GHRA------ 113 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~-i---~~~~------ 113 (212)
+.+.+++|+. ...++++++...+|.++||+|+||||||||+++|+++ |...++... + ....
T Consensus 4 i~nls~~~g~----~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~ 79 (638)
T PRK10636 4 FSSLQIRRGV----RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQP 79 (638)
T ss_pred EEEEEEEeCC----ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCC
Confidence 4555666642 2467889999999999999999999999999999986 322232211 0 0000
Q ss_pred ---ccCC---------------------------------------chhHHHHHHHhCCc--cCC------CCCccchHh
Q psy17138 114 ---YDVG---------------------------------------TRGNQVVRELFGED--IAL------PDGSIDRKK 143 (212)
Q Consensus 114 ---~~~~---------------------------------------~~~~~~~~~~~g~~--~~~------~~~~~~r~~ 143 (212)
|... ......++..+|.. ..+ +.|+..|..
T Consensus 80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~ 159 (638)
T PRK10636 80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN 159 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence 0000 00111223334432 111 245677889
Q ss_pred HHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 144 LGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 144 l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
|+..+..+|+ +++++.+.+++.....+.+.+.+. + ..+++-+|..... ..+||+++.++
T Consensus 160 LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~-~tviivsHd~~~l--~~~~d~i~~L~ 220 (638)
T PRK10636 160 LAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--Q-GTLILISHDRDFL--DPIVDKIIHIE 220 (638)
T ss_pred HHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--C-CeEEEEeCCHHHH--HHhcCEEEEEe
Confidence 9999999998 678999999999999999888764 2 3666679998764 57899999885
No 284
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=5.2e-11 Score=98.96 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=93.9
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc----------c-ccccCCc----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG----------H-RAYDVGT---- 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~----------~-~~~~~~~---- 118 (212)
..++++++...+|++++|+|+||||||||+++|+++ |...++...+. + -.|.+..
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 367788899999999999999999999999999975 22222221110 0 0010000
Q ss_pred --h------------------h----HHHHHHHhCCc--c---C------CCCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138 119 --R------------------G----NQVVRELFGED--I---A------LPDGSIDRKKLGAIVFSNKD--EMNKLNQA 161 (212)
Q Consensus 119 --~------------------~----~~~~~~~~g~~--~---~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i 161 (212)
. . .....+.++.. + . -+.|+.+|..++..+..+|+ +++++.+.
T Consensus 100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g 179 (253)
T PRK14261 100 PKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSA 179 (253)
T ss_pred cccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 0 0 01111222210 0 0 13356677888889999988 56888999
Q ss_pred hhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 162 IWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 162 ~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++...+.+.+.+.++..+ ..+++.+|.+.+. ..+||+++++.
T Consensus 180 LD~~~~~~l~~~l~~~~~~-~tvii~sh~~~~~--~~~~d~v~~l~ 222 (253)
T PRK14261 180 LDPIATAKIEDLIEDLKKE-YTVIIVTHNMQQA--ARVSDYTGFMY 222 (253)
T ss_pred CCHHHHHHHHHHHHHHhhC-ceEEEEEcCHHHH--HhhCCEEEEEE
Confidence 9999999999999877543 6777779988663 46899998875
No 285
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.14 E-value=1e-10 Score=97.71 Aligned_cols=154 Identities=12% Similarity=0.061 Sum_probs=102.3
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG------ 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~------ 110 (212)
..+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++. ...++...+.
T Consensus 14 l~~~~l~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 14 IQVRNLNFYYGK----FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred EEEEEEEEEeCC----eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 345666666632 13577889999999999999999999999999999762 1222221110
Q ss_pred ----c-ccccCCc------h----------------------hHHHHHHHhCCc-----cC------CCCCccchHhHHH
Q psy17138 111 ----H-RAYDVGT------R----------------------GNQVVRELFGED-----IA------LPDGSIDRKKLGA 146 (212)
Q Consensus 111 ----~-~~~~~~~------~----------------------~~~~~~~~~g~~-----~~------~~~~~~~r~~l~~ 146 (212)
+ -.|.+.. . .....++.++.. .. -+.|+.+|-.++.
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 169 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR 169 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 0 0010100 0 011223334321 01 1235677888888
Q ss_pred HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+..+|+ +++++.+.+++...+.+.+.+++... ...+++-+|.+.+. ..+||++++++
T Consensus 170 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~--~~~~d~i~~l~ 229 (260)
T PRK10744 170 GIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQA--ARCSDYTAFMY 229 (260)
T ss_pred HHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHH--HHhCCEEEEEE
Confidence 8989988 56889999999999999999988753 35777779988653 46899998885
No 286
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.3e-10 Score=104.69 Aligned_cols=151 Identities=18% Similarity=0.182 Sum_probs=101.1
Q ss_pred chhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC---Ccc------------c
Q psy17138 51 SSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC---DQL------------G 110 (212)
Q Consensus 51 s~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~---D~i------------~ 110 (212)
...++++. | . +.+.+.++..+.|..++|+|+|||||||+++.|.|+ |-..++. +.+ +
T Consensus 325 ~l~~~y~~-g-~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~ 401 (559)
T COG4988 325 NLSFRYPD-G-K-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVS 401 (559)
T ss_pred ceEEecCC-C-C-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeC
Confidence 55555532 2 2 677888899999999999999999999999999987 2233331 111 1
Q ss_pred cccccCCchh---------------HHHHH------HHh----CCcc-C------CCCCccchHhHHHHhcCChH--HHH
Q psy17138 111 HRAYDVGTRG---------------NQVVR------ELF----GEDI-A------LPDGSIDRKKLGAIVFSNKD--EMN 156 (212)
Q Consensus 111 ~~~~~~~~~~---------------~~~~~------~~~----g~~~-~------~~~~~~~r~~l~~~vf~~~~--~~~ 156 (212)
+..|...... ..+.+ +.. |.+. + -+.|+.+|-.+++.+..+++ +++
T Consensus 402 Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llD 481 (559)
T COG4988 402 QNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD 481 (559)
T ss_pred CCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 2222111110 11111 111 1111 0 02367789999998888876 678
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
++++-++.+..+.+.+.+.++.+ .+++++-+|-+... .-+|++|+++.
T Consensus 482 EpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~~---~~~D~I~vld~ 529 (559)
T COG4988 482 EPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDA---ADADRIVVLDN 529 (559)
T ss_pred CCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHHH---hcCCEEEEecC
Confidence 99999999999999999888753 47788879988654 57999999873
No 287
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.14 E-value=1.9e-11 Score=115.16 Aligned_cols=155 Identities=16% Similarity=0.115 Sum_probs=103.4
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..+++++++|.. .....++++++..++|..++|+|+||||||||+++|.++ |...++...+.
T Consensus 464 I~~~~vsf~Y~~--~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 464 IEFRNVSFAYPG--QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred EEEEEEEEEeCC--CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 456677777632 122357889999999999999999999999999999986 44445432221
Q ss_pred ----cccc-------------cCC--chhHHHH---------HHHhCC--cc-C------CCCCccchHhHHHHhcCChH
Q psy17138 111 ----HRAY-------------DVG--TRGNQVV---------RELFGE--DI-A------LPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 111 ----~~~~-------------~~~--~~~~~~~---------~~~~g~--~~-~------~~~~~~~r~~l~~~vf~~~~ 153 (212)
++.+ .+. ....... +..+.. +. . -+.|+.+|-.+++.+.++|+
T Consensus 542 ~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ 621 (694)
T TIGR03375 542 GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP 621 (694)
T ss_pred EEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 1100 000 0011111 111111 10 0 13467788899999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.++++++.+++...+.+.+.+.+... .+++++-+|-+.. ...||++++++
T Consensus 622 iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~---~~~~D~iivl~ 673 (694)
T TIGR03375 622 ILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL---LDLVDRIIVMD 673 (694)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH---HHhCCEEEEEe
Confidence 56888999999999999988877643 4566666888743 36799999885
No 288
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=5.8e-11 Score=100.11 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=101.1
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-cc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR-AY 114 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~-~~ 114 (212)
+++.+++|... .....++++++...+|++++|+|+||||||||+++|+++ |...+++..+. +. .|
T Consensus 7 ~~~l~~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (277)
T PRK13642 7 VENLVFKYEKE-SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGM 85 (277)
T ss_pred EEEEEEEcCCC-CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEE
Confidence 55556665321 112357888999999999999999999999999999986 33333321110 00 01
Q ss_pred cCC--------chhH---------------------HHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138 115 DVG--------TRGN---------------------QVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN 156 (212)
Q Consensus 115 ~~~--------~~~~---------------------~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~ 156 (212)
.+. .... ....+.+|..-+ -+.|+.+|..++..+..+|+ +++
T Consensus 86 v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllD 165 (277)
T PRK13642 86 VFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILD 165 (277)
T ss_pred EEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 000 0000 112222222111 12355677788889999988 568
Q ss_pred HHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 157 KLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.+.+++...+.+.+.+.++. .....+++.+|.+.+. ..||+++++.
T Consensus 166 EPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~---~~~d~i~~l~ 214 (277)
T PRK13642 166 ESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA---ASSDRILVMK 214 (277)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH---HhCCEEEEEE
Confidence 8899999999999999988775 3256777779998875 2599999886
No 289
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.14 E-value=1.3e-10 Score=93.43 Aligned_cols=156 Identities=16% Similarity=0.102 Sum_probs=96.4
Q ss_pred eechhhhhhhhcc-ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC-------Cc--c---c
Q psy17138 49 LSSSNLRMRELGT-LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC-------DQ--L---G 110 (212)
Q Consensus 49 iss~~~r~~~~g~-~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~-------D~--i---~ 110 (212)
+++.+++|...+. ....++++++..++|.+++|+|+||||||||+++|+++ |...++. +. . .
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~ 82 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTI 82 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcH
Confidence 4455555532110 01356788999999999999999999999999999986 3222221 10 0 0
Q ss_pred -cccccC---CchhHHHHHHHhCC-----------c-------cCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138 111 -HRAYDV---GTRGNQVVRELFGE-----------D-------IALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI 166 (212)
Q Consensus 111 -~~~~~~---~~~~~~~~~~~~g~-----------~-------~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~ 166 (212)
..++.. .........+.++. . ..-+.|+.+|-.++..+.++|+ +++++.+.+++..
T Consensus 83 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 162 (204)
T cd03250 83 RENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162 (204)
T ss_pred HHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 001100 00111111111110 0 0013466778889999999998 5688899999999
Q ss_pred HHHHHHH-HHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 167 LAQVKEE-IARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 167 ~~~~~~~-i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+. +.........+++.+|.+... .. ||+++++.
T Consensus 163 ~~~l~~~ll~~~~~~~~tvi~~sh~~~~~--~~-~d~i~~l~ 201 (204)
T cd03250 163 GRHIFENCILGLLLNNKTRILVTHQLQLL--PH-ADQIVVLD 201 (204)
T ss_pred HHHHHHHHHHHhccCCCEEEEEeCCHHHH--hh-CCEEEEEe
Confidence 8888764 454433356777778887654 34 99998875
No 290
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=6.1e-11 Score=98.94 Aligned_cols=152 Identities=14% Similarity=0.029 Sum_probs=99.9
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc--------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG-------- 110 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~-------- 110 (212)
+.+.+++|.. ...++++++...+|++++|+|+||||||||+++|+++ |...++...+.
T Consensus 10 ~~~l~~~~~~----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 10 VKDLSFYYNT----SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred EEEEEEEECC----eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 4555555531 1356788899999999999999999999999999986 22222221110
Q ss_pred --c-ccccCC------chh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138 111 --H-RAYDVG------TRG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIV 148 (212)
Q Consensus 111 --~-~~~~~~------~~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v 148 (212)
. -.|.+. ... ....++.+|.. .. -+.|+.+|..++..+
T Consensus 86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 165 (259)
T PRK14260 86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL 165 (259)
T ss_pred hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 0 001000 000 01112222320 11 123566778888888
Q ss_pred cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+|+ +++++.+.+++.....+.+.+.+... ...+++.+|.+.+. .++||+++++.
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i--~~~~d~i~~l~ 223 (259)
T PRK14260 166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQA--TRVSDFTAFFS 223 (259)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH--HHhcCeEEEEe
Confidence 88888 56888999999999999999987754 36788889988764 47899999985
No 291
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=9.3e-11 Score=96.28 Aligned_cols=139 Identities=18% Similarity=0.166 Sum_probs=93.1
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc---------ccccCC------chh----
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH---------RAYDVG------TRG---- 120 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~---------~~~~~~------~~~---- 120 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+.. -.|.+. ...
T Consensus 16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl 95 (236)
T cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNI 95 (236)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHH
Confidence 56778889999999999999999999999999987 433443322110 001110 000
Q ss_pred -----------HHH---------HHHHh--CCc------c-CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138 121 -----------NQV---------VRELF--GED------I-ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ 169 (212)
Q Consensus 121 -----------~~~---------~~~~~--g~~------~-~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~ 169 (212)
... ....+ |.+ . .-+.|+.+|-.++..+..+|+ +++++.+.+++.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~ 175 (236)
T cd03253 96 RYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTERE 175 (236)
T ss_pred hhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 000 00111 100 0 012356667788888889988 5688999999999999
Q ss_pred HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.+.+... ...+++.+|.+.+. ..||+++++.
T Consensus 176 l~~~l~~~~~-~~tiii~sh~~~~~---~~~d~~~~l~ 209 (236)
T cd03253 176 IQAALRDVSK-GRTTIVIAHRLSTI---VNADKIIVLK 209 (236)
T ss_pred HHHHHHHhcC-CCEEEEEcCCHHHH---HhCCEEEEEE
Confidence 9999887755 56788889988765 2499999885
No 292
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=6.5e-11 Score=98.14 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=98.4
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc--------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG-------- 110 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~-------- 110 (212)
+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+.
T Consensus 6 ~~~l~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 6 IENFSAYYGE----KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred EEeeEEEeCC----ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 4455555531 1356778899999999999999999999999999975 22233321110
Q ss_pred --c-ccccCC------chhHH----------------------HHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138 111 --H-RAYDVG------TRGNQ----------------------VVRELFGED-----IA------LPDGSIDRKKLGAIV 148 (212)
Q Consensus 111 --~-~~~~~~------~~~~~----------------------~~~~~~g~~-----~~------~~~~~~~r~~l~~~v 148 (212)
+ -.|.+. ...++ ...+.+|.. .. -+.|+.+|..++..+
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 0 001110 01111 111222211 00 123456677888888
Q ss_pred cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+|+ +++++.+.+++.....+.+.+.+... ...+++.+|.+.+. ..+||++++++
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~--~~~~d~i~~l~ 219 (250)
T PRK14262 162 AVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQA--IRIADYIAFMY 219 (250)
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 88887 56888899999999999999987754 46788889988653 46899998875
No 293
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.14 E-value=6.1e-11 Score=108.23 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=102.8
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC-------Ceeee----------------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG-------AGLIN---------------- 105 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg-------~~vi~---------------- 105 (212)
+++.+++|. + ...++++++...+|.+++|+|+||||||||+++|+++- ...++
T Consensus 3 ~~~l~~~~~--~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 3 VKNLTKKFD--G--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred EEEEEEEEC--C--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 445555553 1 24678899999999999999999999999999999872 11232
Q ss_pred -------CCc------------------ccccc-c--c------CCchh---------------------HHHHHHHhCC
Q psy17138 106 -------CDQ------------------LGHRA-Y--D------VGTRG---------------------NQVVRELFGE 130 (212)
Q Consensus 106 -------~D~------------------i~~~~-~--~------~~~~~---------------------~~~~~~~~g~ 130 (212)
... +.+.+ | + +.... ...+++.+|.
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 000 00000 1 0 00011 1122333343
Q ss_pred ccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEecccccccccccc
Q psy17138 131 DIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQV 200 (212)
Q Consensus 131 ~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~ 200 (212)
... -+.|+.+|..++..+..+|+ +++++.+.++|...+.+.+.++++. .....|++-+|.+... ..+|
T Consensus 159 ~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~--~~~~ 236 (520)
T TIGR03269 159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI--EDLS 236 (520)
T ss_pred hhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH--HHhc
Confidence 211 13467788899999999998 6789999999999999999888774 3356778889998764 4789
Q ss_pred CeEEEEE
Q psy17138 201 HEIWVTF 207 (212)
Q Consensus 201 d~v~~v~ 207 (212)
|+++++.
T Consensus 237 d~i~~l~ 243 (520)
T TIGR03269 237 DKAIWLE 243 (520)
T ss_pred CEEEEEe
Confidence 9999875
No 294
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=8.7e-11 Score=97.50 Aligned_cols=152 Identities=13% Similarity=0.072 Sum_probs=98.6
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc--------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG-------- 110 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~-------- 110 (212)
+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++. ...++...+.
T Consensus 8 ~~~l~~~~~~----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 8 SSDVHLFYGK----FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred EEeEEEEECC----eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 4555555531 13567788999999999999999999999999999852 1222221110
Q ss_pred --c-ccccCCc------hhHH----------------------HHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138 111 --H-RAYDVGT------RGNQ----------------------VVRELFGED-----IA------LPDGSIDRKKLGAIV 148 (212)
Q Consensus 111 --~-~~~~~~~------~~~~----------------------~~~~~~g~~-----~~------~~~~~~~r~~l~~~v 148 (212)
. -.|.+.. ..++ ...+.++.. .. -+.|+.+|..++..+
T Consensus 84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral 163 (252)
T PRK14255 84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL 163 (252)
T ss_pred hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence 0 0011100 0000 011112210 00 123566778888899
Q ss_pred cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+|+ +++++.+.+++.....+.+.+.+...+ ..+++-+|.+.+. ..+||+++++.
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~vsH~~~~~--~~~~d~i~~l~ 221 (252)
T PRK14255 164 AVKPDVILLDEPTSALDPISSTQIENMLLELRDQ-YTIILVTHSMHQA--SRISDKTAFFL 221 (252)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhC-CEEEEEECCHHHH--HHhCCEEEEEE
Confidence 99988 668899999999999999998877543 5777778988653 56899998885
No 295
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.14 E-value=4.7e-11 Score=111.22 Aligned_cols=159 Identities=17% Similarity=0.092 Sum_probs=107.5
Q ss_pred cceechhhhhhhh-c------cccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----
Q psy17138 47 DKLSSSNLRMREL-G------TLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~-g------~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---- 110 (212)
..+++.++.|... + .....++++++...+|+++||+|+||||||||+++|.++ |...++...+.
T Consensus 314 L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~ 393 (623)
T PRK10261 314 LQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSP 393 (623)
T ss_pred EEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCH
Confidence 3566666666321 1 112467889999999999999999999999999999987 33344332110
Q ss_pred --------------ccc---ccCCch----------------------hHHHHHHHhCCc--cCC------CCCccchHh
Q psy17138 111 --------------HRA---YDVGTR----------------------GNQVVRELFGED--IAL------PDGSIDRKK 143 (212)
Q Consensus 111 --------------~~~---~~~~~~----------------------~~~~~~~~~g~~--~~~------~~~~~~r~~ 143 (212)
.+. +.+... ....+++.+|.. ..+ +.|+.+|-.
T Consensus 394 ~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~ 473 (623)
T PRK10261 394 GKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRIC 473 (623)
T ss_pred HHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHH
Confidence 010 000000 111233445542 111 346778889
Q ss_pred HHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 144 LGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 144 l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
|+..+..+|+ +++++.+.+++.....+.+.+.++. .....+++-+|.+... ..+||++++++
T Consensus 474 iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v--~~~~dri~vl~ 538 (623)
T PRK10261 474 IARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVV--ERISHRVAVMY 538 (623)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 9999999998 5688999999999999999998875 3345677779998764 57899999985
No 296
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=5.8e-11 Score=100.00 Aligned_cols=154 Identities=16% Similarity=0.069 Sum_probs=102.6
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG------ 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~------ 110 (212)
..+.+.+++|.. ...++++++...+|++++|+|+||||||||+++|+++. ...++...+.
T Consensus 21 l~~~nl~~~~~~----~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 21 FEVEGVKVFYGG----FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred EEEeeEEEEeCC----eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 446666666642 13678889999999999999999999999999999762 2223221110
Q ss_pred ----cc-cccCCc------hhHH--------------------HHHHHhCC-----ccC------CCCCccchHhHHHHh
Q psy17138 111 ----HR-AYDVGT------RGNQ--------------------VVRELFGE-----DIA------LPDGSIDRKKLGAIV 148 (212)
Q Consensus 111 ----~~-~~~~~~------~~~~--------------------~~~~~~g~-----~~~------~~~~~~~r~~l~~~v 148 (212)
.. .|.++. ...+ ...+.++. +.. -+.|+.+|..|+..+
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 176 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAI 176 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 00 011110 1111 11122221 001 123566788888899
Q ss_pred cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+|+ +++++.+.+++.....+.+.+.+... ...+++.+|.+.+. ..+||+++++.
T Consensus 177 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~--~~~~d~i~~l~ 234 (274)
T PRK14265 177 AMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQA--SRVADWTAFFN 234 (274)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence 99988 56889999999999999999988754 35778879988664 57899999985
No 297
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.13 E-value=3e-11 Score=110.76 Aligned_cols=158 Identities=14% Similarity=0.092 Sum_probs=104.2
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc-----------
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL----------- 109 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i----------- 109 (212)
...+++.++++... .-..++++++..++|..++|+|+||||||||+++|.++ |...++...+
T Consensus 316 ~i~~~~v~~~y~~~--~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 316 HLSVENVTIVPPGG--KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred eEEEEEEEEEcCCC--CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 35566766666421 12357888999999999999999999999999999986 3333332111
Q ss_pred ----ccccc-------------cCC--chh---------HHHHHHHh--CCccC-------CCCCccchHhHHHHhcCCh
Q psy17138 110 ----GHRAY-------------DVG--TRG---------NQVVRELF--GEDIA-------LPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 110 ----~~~~~-------------~~~--~~~---------~~~~~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~ 152 (212)
.++.+ .+. ... ....++.+ |.+.. -+.|+.+|-.+++.+.++|
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 01100 000 000 01122222 11110 1346778889999999999
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
+ +++++.+.+++...+.+.+.+.+.....+.+++-+|-+.. .+.||++++++-
T Consensus 474 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~---~~~~d~i~~l~~ 528 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL---LGCVDKILVLQD 528 (544)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH---HHhCCEEEEEEC
Confidence 8 6688999999999999988887764334677777888753 357999998863
No 298
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.13 E-value=1.1e-10 Score=94.27 Aligned_cols=141 Identities=16% Similarity=0.089 Sum_probs=94.6
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----c-ccccC-------Cchh------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-----H-RAYDV-------GTRG------ 120 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-----~-~~~~~-------~~~~------ 120 (212)
.++++++...+|++++|+|+||||||||+++|.++ |...++...+. . ..|.+ ....
T Consensus 17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~ 96 (207)
T PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEF 96 (207)
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHH
Confidence 57778899999999999999999999999999987 43334332110 0 00110 0011
Q ss_pred -----------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCC
Q psy17138 121 -----------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSES 180 (212)
Q Consensus 121 -----------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~ 180 (212)
....++.+|.... -+.|+.+|-.++..+..+|+ +++++.+.+++...+.+.+.+.+....
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 176 (207)
T PRK13539 97 WAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176 (207)
T ss_pred HHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 1223333333211 12356667788888888888 568899999999999999999876534
Q ss_pred CcEEEEEeccccccccccccCeEEEEEeC
Q psy17138 181 HKVIVIEAAVLLSAKWQDQVHEIWVTFIP 209 (212)
Q Consensus 181 ~~~vvie~~~l~e~~~~~~~d~v~~v~~~ 209 (212)
...+++.+|.+.+.. . |+++-+..+
T Consensus 177 ~~tiii~sH~~~~~~--~--~~~~~~~~~ 201 (207)
T PRK13539 177 GGIVIAATHIPLGLP--G--ARELDLGPF 201 (207)
T ss_pred CCEEEEEeCCchhhc--c--CcEEeecCc
Confidence 567788899987652 2 777766543
No 299
>PRK13409 putative ATPase RIL; Provisional
Probab=99.13 E-value=8e-11 Score=108.91 Aligned_cols=139 Identities=17% Similarity=0.148 Sum_probs=95.7
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCee-----------eeCCcccc-----------ccccCC
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGL-----------INCDQLGH-----------RAYDVG 117 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~v-----------i~~D~i~~-----------~~~~~~ 117 (212)
.+.+++ .+.+|.++||+|+|||||||++++|+++ |-.. +++..+.. -.+.++
T Consensus 89 ~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q 167 (590)
T PRK13409 89 KLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQ 167 (590)
T ss_pred eEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeeccc
Confidence 455566 6899999999999999999999999986 3221 22211100 001011
Q ss_pred c----------------------hhHHHHHHHhCCccC-C------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138 118 T----------------------RGNQVVRELFGEDIA-L------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI 166 (212)
Q Consensus 118 ~----------------------~~~~~~~~~~g~~~~-~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~ 166 (212)
. .....+++.+|.... + +.|+.+|-.++..+..+|+ +++++.+.+++..
T Consensus 168 ~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~ 247 (590)
T PRK13409 168 YVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQ 247 (590)
T ss_pred chhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 0 011233344444321 1 2367788899999999998 6688999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
...+.+.++++.. ...+++-+|.+.+. ..+||+++++.
T Consensus 248 ~~~l~~~i~~l~~-g~tvIivsHd~~~l--~~~~D~v~vl~ 285 (590)
T PRK13409 248 RLNVARLIRELAE-GKYVLVVEHDLAVL--DYLADNVHIAY 285 (590)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence 9999999988765 67788889998764 57899998874
No 300
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.13 E-value=2.4e-11 Score=114.25 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=103.3
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..+++++++|... .-..++++++..++|+.++|+|+||||||||+++|.++ |...+++-.+.
T Consensus 452 I~~~nvsf~Y~~~--~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 452 IEVDRVTFRYRPD--GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred EEEEEEEEEcCCC--CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 4567777777422 12357889999999999999999999999999999987 44444432221
Q ss_pred ----cccccCC--------------chhHHHHHHHhCC-----------cc-C------CCCCccchHhHHHHhcCChH-
Q psy17138 111 ----HRAYDVG--------------TRGNQVVRELFGE-----------DI-A------LPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 111 ----~~~~~~~--------------~~~~~~~~~~~g~-----------~~-~------~~~~~~~r~~l~~~vf~~~~- 153 (212)
++.+... .......++..|. +. . -+.|+.+|-.+++.+.++|+
T Consensus 530 ~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i 609 (686)
T TIGR03797 530 GVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI 609 (686)
T ss_pred EEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 1111100 0111111221111 10 0 13467788899999999998
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.++++.+-+++...+.+.+.+.+. .+++++-+|-+.. -..||++++++
T Consensus 610 LiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~---i~~~D~Iivl~ 658 (686)
T TIGR03797 610 LLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST---IRNADRIYVLD 658 (686)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH---HHcCCEEEEEE
Confidence 568899999999999998888775 2577777998744 25699999885
No 301
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.13 E-value=2.6e-11 Score=112.24 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=103.5
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..+++.+++|.. ....++++++..++|+.++|+|+||||||||+++|.++ |...++...+.
T Consensus 341 i~~~~v~f~y~~---~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 341 IDIDNVSFAYRD---DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred EEEEEEEEEeCC---CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 445566665531 12357888999999999999999999999999999986 44455543221
Q ss_pred ----cccccCC--------------chhHHHHHHHhCC-----------ccC-------CCCCccchHhHHHHhcCChH-
Q psy17138 111 ----HRAYDVG--------------TRGNQVVRELFGE-----------DIA-------LPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 111 ----~~~~~~~--------------~~~~~~~~~~~g~-----------~~~-------~~~~~~~r~~l~~~vf~~~~- 153 (212)
++.+... .......++..|. +.. -+.|+.+|-.+++.+..+|+
T Consensus 418 ~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i 497 (592)
T PRK10790 418 AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI 497 (592)
T ss_pred EEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 1111110 0111122222221 100 13467788899999999998
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+-+++...+.+.+.+.+... .+++++-+|-+.. ...||++++++
T Consensus 498 lllDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~---l~~~D~ii~l~ 548 (592)
T PRK10790 498 LILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLST---IVEADTILVLH 548 (592)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHH---HHhCCEEEEEE
Confidence 66889999999999999888877643 4677777998744 35799999885
No 302
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.13 E-value=7.2e-11 Score=107.95 Aligned_cols=142 Identities=19% Similarity=0.149 Sum_probs=99.2
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCcc-----------ccc-cccC---------Cc
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQL-----------GHR-AYDV---------GT 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i-----------~~~-~~~~---------~~ 118 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++...+ .+. .|.+ ..
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~ 379 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRL 379 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcc
Confidence 467889999999999999999999999999999986 2223332111 000 0100 00
Q ss_pred h-----------------------hHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138 119 R-----------------------GNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL 165 (212)
Q Consensus 119 ~-----------------------~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~ 165 (212)
. ....+++.+|.. ..+ +.|+.+|..++..+..+|+ +++++.+.++|.
T Consensus 380 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 459 (529)
T PRK15134 380 NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKT 459 (529)
T ss_pred cHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHH
Confidence 0 111233445542 111 3467778899999999998 668999999999
Q ss_pred HHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 166 ILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 166 ~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+.+.+.+.+.. .....+++-+|.+.+. ..+||+++++.
T Consensus 460 ~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~--~~~~d~i~~l~ 500 (529)
T PRK15134 460 VQAQILALLKSLQQKHQLAYLFISHDLHVV--RALCHQVIVLR 500 (529)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEeCCHHHH--HHhcCeEEEEE
Confidence 9999999998775 3345777779998764 46899999885
No 303
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.13 E-value=2.5e-11 Score=112.14 Aligned_cols=140 Identities=20% Similarity=0.194 Sum_probs=95.4
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCcc---------------cccccc---------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQL---------------GHRAYD--------- 115 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i---------------~~~~~~--------- 115 (212)
..++++++..++|..++|+|+||||||||+++|.++ |...++...+ .++.+.
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI 443 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNV 443 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHh
Confidence 356788999999999999999999999999999986 3333333211 111111
Q ss_pred ----CC--chhHH---------HHHHHh--CCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138 116 ----VG--TRGNQ---------VVRELF--GEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ 169 (212)
Q Consensus 116 ----~~--~~~~~---------~~~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~ 169 (212)
+. .+.+. ..+..+ |.+.. -+.|+.+|-.|++.+..+|+ ++++.++.+++...+.
T Consensus 444 ~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~ 523 (588)
T PRK11174 444 LLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQL 523 (588)
T ss_pred hcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 10 01111 112222 11111 13467889999999999998 6688899999999999
Q ss_pred HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.+.+.. +.+++++-+|-+.. ...||++++++
T Consensus 524 i~~~l~~~~-~~~TvIiItHrl~~---i~~aD~Iivl~ 557 (588)
T PRK11174 524 VMQALNAAS-RRQTTLMVTHQLED---LAQWDQIWVMQ 557 (588)
T ss_pred HHHHHHHHh-CCCEEEEEecChHH---HHhCCEEEEEe
Confidence 988887764 45667776888743 35799999885
No 304
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=8.8e-11 Score=99.50 Aligned_cols=154 Identities=13% Similarity=0.091 Sum_probs=102.3
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCcc-------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQL------- 109 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i------- 109 (212)
..+++.+++|.. ...++++++....|++++|+|+||||||||+++|.++. ...++...+
T Consensus 40 l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 40 VVAKNFSIYYGE----FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEeeeEEEECC----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 456666666632 13567788999999999999999999999999999852 112222111
Q ss_pred ---cccc-ccCCc------h----------------------hHHHHHHHhCCc-----cC------CCCCccchHhHHH
Q psy17138 110 ---GHRA-YDVGT------R----------------------GNQVVRELFGED-----IA------LPDGSIDRKKLGA 146 (212)
Q Consensus 110 ---~~~~-~~~~~------~----------------------~~~~~~~~~g~~-----~~------~~~~~~~r~~l~~ 146 (212)
.+.+ |.+.. . ......+.+|.. .. -+.|+.+|..|+.
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAr 195 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVAR 195 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHH
Confidence 0000 11110 0 001122233321 11 1235677888998
Q ss_pred HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+..+|+ +++++.+.+++.....+.+.+.+... ...+++.+|.+.+. .++||++++++
T Consensus 196 aL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~--~~~~d~i~~L~ 255 (286)
T PRK14275 196 TLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQA--SRVSDYTMFFY 255 (286)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHH--HHhCCEEEEEE
Confidence 9999998 56888999999999999999987754 35778889988764 46899999885
No 305
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.12 E-value=5.1e-11 Score=100.33 Aligned_cols=142 Identities=15% Similarity=0.058 Sum_probs=93.8
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-------------eeeeCCccc--------cc-cccCC----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-------------GLINCDQLG--------HR-AYDVG---- 117 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-------------~vi~~D~i~--------~~-~~~~~---- 117 (212)
..++++++....|++++|+|+||||||||+++|+++-. ..++...+. +. .|.+.
T Consensus 15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~ 94 (272)
T PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94 (272)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence 35677889999999999999999999999999997521 122221110 00 01000
Q ss_pred ---chh-------------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcC---------ChH
Q psy17138 118 ---TRG-------------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFS---------NKD 153 (212)
Q Consensus 118 ---~~~-------------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~---------~~~ 153 (212)
... ....++.+|..-. -+.|+.+|..++..+.+ +|+
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~ 174 (272)
T PRK13547 95 AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPR 174 (272)
T ss_pred CCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCC
Confidence 000 1122223332211 12355667788877773 777
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++...+.+.+.++++. .....+++.+|.+.+. .++||+++++.
T Consensus 175 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~--~~~~d~i~~l~ 229 (272)
T PRK13547 175 YLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLA--ARHADRIAMLA 229 (272)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence 6688999999999999999998775 3256777779988653 46899998885
No 306
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.12 E-value=8.3e-11 Score=107.34 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=106.1
Q ss_pred cceechhhhhhhh-ccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeee-CCc-----------
Q psy17138 47 DKLSSSNLRMREL-GTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLIN-CDQ----------- 108 (212)
Q Consensus 47 ~~iss~~~r~~~~-g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~-~D~----------- 108 (212)
..+++.+++|... +.....++++++...+|.+++|+|+||||||||+++|+++ |...++ ...
T Consensus 280 l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~ 359 (520)
T TIGR03269 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359 (520)
T ss_pred EEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhh
Confidence 4456666665321 0112357788999999999999999999999999999987 334443 210
Q ss_pred ---cccc-cccCCc-------hh--------------------HHHHHHHhCCcc------CC------CCCccchHhHH
Q psy17138 109 ---LGHR-AYDVGT-------RG--------------------NQVVRELFGEDI------AL------PDGSIDRKKLG 145 (212)
Q Consensus 109 ---i~~~-~~~~~~-------~~--------------------~~~~~~~~g~~~------~~------~~~~~~r~~l~ 145 (212)
..+. .|.+.. .. ...++..+|... .+ +.|+.+|..++
T Consensus 360 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~la 439 (520)
T TIGR03269 360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALA 439 (520)
T ss_pred HHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHH
Confidence 0000 111110 00 112234455421 11 23567788899
Q ss_pred HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+..+|+ +++++.+.++|...+.+.+.+.++. .....+++-+|.+.+. ..+||+++++.
T Consensus 440 ral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~--~~~~d~i~~l~ 502 (520)
T TIGR03269 440 QVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFV--LDVCDRAALMR 502 (520)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 88889998 6689999999999999999998775 3345777779998764 57899999885
No 307
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1e-10 Score=98.11 Aligned_cols=155 Identities=15% Similarity=0.080 Sum_probs=102.0
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc-----
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG----- 110 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~----- 110 (212)
...+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++-. ..++...+.
T Consensus 20 ~l~~~nl~~~~~~----~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 20 ALSTKDLHVYYGK----KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred EEEEeeEEEEECC----eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 3456676666631 246788899999999999999999999999999998631 222321110
Q ss_pred -----c-ccccCCc------hhH----------------------HHHHHHhCCc-----cC------CCCCccchHhHH
Q psy17138 111 -----H-RAYDVGT------RGN----------------------QVVRELFGED-----IA------LPDGSIDRKKLG 145 (212)
Q Consensus 111 -----~-~~~~~~~------~~~----------------------~~~~~~~g~~-----~~------~~~~~~~r~~l~ 145 (212)
. -.|.+.. ... ...++.++.. .. -+.|+.+|-.++
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA 175 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence 0 0111110 000 1112222221 00 123556677888
Q ss_pred HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+..+|+ +++++.+.+++.....+.+.+.++.. ...+++.+|.+.+. .++||+++++.
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~--~~~~d~i~~l~ 236 (267)
T PRK14237 176 RAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQQA--ARASDYTAFFY 236 (267)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH--HHhcCEEEEEE
Confidence 88888888 56888899999999999999988753 45777778988653 47899999885
No 308
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.3e-10 Score=97.62 Aligned_cols=154 Identities=14% Similarity=0.108 Sum_probs=102.2
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG------ 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~------ 110 (212)
.++.+.+++|.. ...+.++++...+|.+++|+|+||||||||+++|+++. ...++...+.
T Consensus 26 l~~~nl~~~~~~----~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 26 LEVRNLNLFYGD----KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred EEEEEEEEEECC----eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 456677776632 13567788999999999999999999999999999872 1223221111
Q ss_pred ----cc-cccCCc------hh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHH
Q psy17138 111 ----HR-AYDVGT------RG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGA 146 (212)
Q Consensus 111 ----~~-~~~~~~------~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~ 146 (212)
+. .|.+.. .. .....+.++.. .. -+.|+.+|-.++.
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 181 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIAR 181 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHH
Confidence 00 011100 00 11112223321 00 1235667778888
Q ss_pred HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+..+|+ +++++.+.+++.....+.+.+.++.. ...+++.+|.+.+. ..+||++++++
T Consensus 182 al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~--~~~~d~i~~l~ 241 (272)
T PRK14236 182 AIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQA--ARVSDYTAFMY 241 (272)
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHH--HhhCCEEEEEE
Confidence 8888888 56888999999999999999988754 36778889998763 46899999885
No 309
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=9.5e-11 Score=97.21 Aligned_cols=153 Identities=10% Similarity=0.044 Sum_probs=100.0
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCcc--------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQL-------- 109 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i-------- 109 (212)
++.+.+++|.. ...++++++...+|++++|+|+||||||||+++|+++.. ..++...+
T Consensus 6 ~~~~l~~~~~~----~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 6 SAKDVHLSYGN----YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred EEEeeEEEECC----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 35556666531 235677889999999999999999999999999998632 11221111
Q ss_pred --cccc-ccCC------chh----------------------HHHHHHHhCCc-----cCC------CCCccchHhHHHH
Q psy17138 110 --GHRA-YDVG------TRG----------------------NQVVRELFGED-----IAL------PDGSIDRKKLGAI 147 (212)
Q Consensus 110 --~~~~-~~~~------~~~----------------------~~~~~~~~g~~-----~~~------~~~~~~r~~l~~~ 147 (212)
.+.+ |.+. ... .....+.++.. ... +.|+.+|-.++..
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lara 161 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARA 161 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHH
Confidence 0000 1000 000 11122233321 011 2356667788888
Q ss_pred hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.++|+ +++++.+.++|...+.+.+.+.+... ...+++.+|.+.+. .++||+++++.
T Consensus 162 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~--~~~~d~i~~l~ 220 (251)
T PRK14251 162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQA--GRISDQTAFLM 220 (251)
T ss_pred HhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHH--HhhcCEEEEEE
Confidence 888888 56888999999999999999987753 36778879988663 46899999875
No 310
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.12 E-value=8.3e-11 Score=109.81 Aligned_cols=150 Identities=16% Similarity=0.116 Sum_probs=100.2
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc-cc---ccc-ccCCc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ-LG---HRA-YDVGT 118 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~-i~---~~~-~~~~~ 118 (212)
+.+.++.|.. ...++++++...+|.++||+|+||||||||+++|+++ |...++.+. +. ... .....
T Consensus 6 i~~ls~~~~~----~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 6 IHGAWLSFSD----APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEG 81 (635)
T ss_pred EeeEEEEeCC----ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCC
Confidence 4555566631 2467888999999999999999999999999999986 333333221 00 000 00000
Q ss_pred -------------------------------------------------------hhHHHHHHHhCCccC-----CCCCc
Q psy17138 119 -------------------------------------------------------RGNQVVRELFGEDIA-----LPDGS 138 (212)
Q Consensus 119 -------------------------------------------------------~~~~~~~~~~g~~~~-----~~~~~ 138 (212)
.....++..+|...- -+.|+
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGe 161 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGW 161 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHH
Confidence 001112222332110 13456
Q ss_pred cchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 139 IDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 139 ~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+|..|+..+..+|+ +++++.+.+++.....+.+.+.+.. ..+++-+|..... ..+||++|.+.
T Consensus 162 kqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~~l--~~~~d~i~~L~ 227 (635)
T PRK11147 162 LRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRSFI--RNMATRIVDLD 227 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHHHH--HHhcCeEEEEE
Confidence 778899999999998 6689999999999999999998752 3677779998764 46899999885
No 311
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.12 E-value=1.3e-10 Score=105.46 Aligned_cols=158 Identities=11% Similarity=0.055 Sum_probs=105.5
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC------eeeeCCccc----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA------GLINCDQLG---------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~------~vi~~D~i~---------- 110 (212)
.++++.+++|...+ ....++++++...+|++++|+|+||||||||+++|+++-. ..++...+.
T Consensus 258 l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 258 LEARNLTCWDVINP-HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred EEEeCCcccccccc-cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 34555555552111 1246788899999999999999999999999999998632 223221110
Q ss_pred ------cc----cccCC---------------------c-----hhHHHHHHHhCCcc--CC------CCCccchHhHHH
Q psy17138 111 ------HR----AYDVG---------------------T-----RGNQVVRELFGEDI--AL------PDGSIDRKKLGA 146 (212)
Q Consensus 111 ------~~----~~~~~---------------------~-----~~~~~~~~~~g~~~--~~------~~~~~~r~~l~~ 146 (212)
.+ .+.+. . .....+++.++... .+ +.|+.+|..++.
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~ 416 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAK 416 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHH
Confidence 00 00000 0 01223345555421 11 235677888998
Q ss_pred HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+..+|+ +++++.+.+++.....+.+.+.++......+++.+|.+.+. ..+||+++++.
T Consensus 417 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~--~~~~d~v~~l~ 477 (500)
T TIGR02633 417 MLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEV--LGLSDRVLVIG 477 (500)
T ss_pred HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence 8888888 56899999999999999988887763356788889998764 57899999874
No 312
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.11 E-value=1.4e-10 Score=106.82 Aligned_cols=151 Identities=11% Similarity=0.041 Sum_probs=100.6
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---cccc-ccCCc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHRA-YDVGT 118 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~~-~~~~~ 118 (212)
+++.+++|.. + ...++++++....|.+++|+|+||||||||+++|+++ |...++.. .+ ..+. +.+..
T Consensus 9 i~~l~~~y~~-~--~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~ 85 (556)
T PRK11819 9 MNRVSKVVPP-K--KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEK 85 (556)
T ss_pred EeeEEEEeCC-C--CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCC
Confidence 5566666631 1 2367889999999999999999999999999999986 22222211 01 0110 00000
Q ss_pred hh---------------------------------------------------------HHHHHHHhCCccC------CC
Q psy17138 119 RG---------------------------------------------------------NQVVRELFGEDIA------LP 135 (212)
Q Consensus 119 ~~---------------------------------------------------------~~~~~~~~g~~~~------~~ 135 (212)
.. .......+|.... -+
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LS 165 (556)
T PRK11819 86 TVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLS 165 (556)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcC
Confidence 00 0111122222111 13
Q ss_pred CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.|+.+|-.|+..+..+|+ +++++.+.++|.....+.+.+++.. ..+++-+|.+.+. ..+||++|++.
T Consensus 166 gGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~--~~~~d~i~~l~ 234 (556)
T PRK11819 166 GGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFL--DNVAGWILELD 234 (556)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHH--HhhcCeEEEEe
Confidence 467778899999999998 6689999999999999999888752 3677779998664 47899999886
No 313
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=8.8e-11 Score=98.13 Aligned_cols=153 Identities=13% Similarity=0.012 Sum_probs=99.7
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCe----------eeeCCccc--------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAG----------LINCDQLG-------- 110 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~----------vi~~D~i~-------- 110 (212)
+++.+++|.. ...++++++...+|++++|+|+||||||||+++|+++..+ .++...+.
T Consensus 10 ~~nl~~~~~~----~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 10 VNNLSFYYDT----QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred EeeEEEEeCC----eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 5555555531 1356778899999999999999999999999999987221 12211110
Q ss_pred --c-ccccCC------chhH----------------------HHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138 111 --H-RAYDVG------TRGN----------------------QVVRELFGED-----IA------LPDGSIDRKKLGAIV 148 (212)
Q Consensus 111 --~-~~~~~~------~~~~----------------------~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v 148 (212)
. -.|.+. .... ....+.++.. .. -+.|+.+|-.++..+
T Consensus 86 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 165 (261)
T PRK14258 86 LRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL 165 (261)
T ss_pred hhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 0 001010 0110 1111222210 00 123566677888888
Q ss_pred cCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+|+ +++++.+.+++.....+.+.+.++. .....+++.+|.+.+. .++||+++++.
T Consensus 166 ~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i--~~~~d~i~~l~ 225 (261)
T PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQV--SRLSDFTAFFK 225 (261)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH--HHhcCEEEEEc
Confidence 88888 5688899999999999999888764 3356777779998764 57999999886
No 314
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1.6e-10 Score=97.52 Aligned_cols=154 Identities=16% Similarity=0.101 Sum_probs=103.2
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG------ 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~------ 110 (212)
..+.+.+++|.. ...++++++...+|++++|+|+||||||||+++|.++.. ..++...+.
T Consensus 22 l~i~nl~~~~~~----~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 22 MAAVNLTLGFAG----KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEeeEEEEECC----EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 467777777752 135778899999999999999999999999999998632 122221110
Q ss_pred ---c-ccccCC------chhH----------------------HHHHHHhCCcc-----C------CCCCccchHhHHHH
Q psy17138 111 ---H-RAYDVG------TRGN----------------------QVVRELFGEDI-----A------LPDGSIDRKKLGAI 147 (212)
Q Consensus 111 ---~-~~~~~~------~~~~----------------------~~~~~~~g~~~-----~------~~~~~~~r~~l~~~ 147 (212)
. -.|.+. ...+ ...++.+|... + -+.|+.+|..|+..
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAra 177 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLART 177 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 0 001111 0010 11223333321 0 12356678888888
Q ss_pred hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+..+|. +++++.+.+++...+.+.+.+.++... ..+++.+|.+.+. ..+||+++++.
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~tiiivsH~~~~~--~~~~dri~~l~ 236 (276)
T PRK14271 178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQA--ARISDRAALFF 236 (276)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 888888 568889999999999999988877543 6778889988653 57899998875
No 315
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.10 E-value=9e-11 Score=94.25 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=87.0
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-------c-ccc-------CCchh---
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-------R-AYD-------VGTRG--- 120 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-------~-~~~-------~~~~~--- 120 (212)
..++++++...+|++++|+|+||||||||+++|+++ |...++...+.+ . .|. +....
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 94 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLREN 94 (200)
T ss_pred eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHH
Confidence 357778899999999999999999999999999987 433444322210 0 011 11111
Q ss_pred -------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc
Q psy17138 121 -------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS 178 (212)
Q Consensus 121 -------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~ 178 (212)
....++.++.... -+.|+.+|-.++..+..+|+ +++++.+.+++.....+.+.+++..
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~ 174 (200)
T PRK13540 95 CLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR 174 (200)
T ss_pred HHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence 1223333333211 12356677788888889988 5688889999999999999998765
Q ss_pred CCCcEEEEEeccccc
Q psy17138 179 ESHKVIVIEAAVLLS 193 (212)
Q Consensus 179 ~~~~~vvie~~~l~e 193 (212)
.....+++.+|....
T Consensus 175 ~~~~tiii~sh~~~~ 189 (200)
T PRK13540 175 AKGGAVLLTSHQDLP 189 (200)
T ss_pred HcCCEEEEEeCCchh
Confidence 334567777887543
No 316
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1.8e-10 Score=95.60 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=99.5
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc--------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG-------- 110 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~-------- 110 (212)
+++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++...+.
T Consensus 7 ~~~l~~~~~~----~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 7 IRGVNFFYHK----HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred EEEEEEEECC----eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4455555531 1356788899999999999999999999999999986 33333322111
Q ss_pred --c-ccccCC------chh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHh
Q psy17138 111 --H-RAYDVG------TRG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIV 148 (212)
Q Consensus 111 --~-~~~~~~------~~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~v 148 (212)
+ -.|.+. ... .......+|.. .. -+.|+.+|..++..+
T Consensus 83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 162 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162 (251)
T ss_pred hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 0 001000 000 00111122210 01 123566778888888
Q ss_pred cCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+|+ +++++.+.+++.....+.+.+.++. ....+++.+|.+.+. .++||+++++.
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~--~~~~d~i~~l~ 220 (251)
T PRK14249 163 AIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQA--ARASDWTGFLL 220 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH--HhhCCEEEEEe
Confidence 89988 5688899999999999999888774 346788889988764 47899999885
No 317
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.10 E-value=5.4e-11 Score=109.50 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=103.0
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------ 109 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------ 109 (212)
..+++.++++...+ ...++++++..++|.+++|+|+||||||||+++|.++ |...++...+
T Consensus 331 i~~~~v~f~y~~~~--~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i 408 (571)
T TIGR02203 331 VEFRNVTFRYPGRD--RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV 408 (571)
T ss_pred EEEEEEEEEcCCCC--CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhc
Confidence 45666666663221 1346778899999999999999999999999999987 4444443211
Q ss_pred ---ccccccCC----------------chhHHHHHHHhC-----------Ccc-C------CCCCccchHhHHHHhcCCh
Q psy17138 110 ---GHRAYDVG----------------TRGNQVVRELFG-----------EDI-A------LPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 110 ---~~~~~~~~----------------~~~~~~~~~~~g-----------~~~-~------~~~~~~~r~~l~~~vf~~~ 152 (212)
.++.+... .......++..| .+. . -+.|+.+|-.+++.+.++|
T Consensus 409 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~ 488 (571)
T TIGR02203 409 ALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDA 488 (571)
T ss_pred eEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 11111111 011111111111 110 0 1346778889999999999
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+ +++++++-+++...+.+.+.+.+.. +.+++++-+|-.. +...||+++.++
T Consensus 489 ~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~---~~~~~D~ii~l~ 541 (571)
T TIGR02203 489 PILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS---TIEKADRIVVMD 541 (571)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH---HHHhCCEEEEEe
Confidence 8 5689999999999999988887764 4467777788873 357899999885
No 318
>KOG0058|consensus
Probab=99.09 E-value=1.1e-10 Score=107.38 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=101.8
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..-.++.+.|+... ....++++++..+.|++++|+|||||||||++++|..+ |...+|+-++.
T Consensus 466 IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~I 544 (716)
T KOG0058|consen 466 IEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKI 544 (716)
T ss_pred EEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHe
Confidence 34455555554321 33566889999999999999999999999999999986 44555544331
Q ss_pred ----ccc------------ccCCc---h-h--------HHHHHHHhCCcc---------CCCCCccchHhHHHHhcCChH
Q psy17138 111 ----HRA------------YDVGT---R-G--------NQVVRELFGEDI---------ALPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 111 ----~~~------------~~~~~---~-~--------~~~~~~~~g~~~---------~~~~~~~~r~~l~~~vf~~~~ 153 (212)
+|. |.... + . -.+.+..|.+.. .-+.|+.+|-.|++.+..+|.
T Consensus 545 g~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~ 624 (716)
T KOG0058|consen 545 GLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPR 624 (716)
T ss_pred eeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCC
Confidence 110 11110 0 0 112233332221 124578899999999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+++.+..++.+-...+++.+.+...+ .+|++=+|=|--- +.+|++++++
T Consensus 625 VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAHRLSTV---~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 625 VLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAHRLSTV---RHADQIVVID 676 (716)
T ss_pred EEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEehhhhHh---hhccEEEEEc
Confidence 568888889888888888888666444 4555547877532 3578888775
No 319
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.09 E-value=4.7e-11 Score=112.71 Aligned_cols=153 Identities=17% Similarity=0.143 Sum_probs=102.9
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------ 109 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------ 109 (212)
..+++++++|.. + -..++++++..++|..++|+|+||||||||+++|.++ |...+++-.+
T Consensus 474 I~~~~vsf~y~~-~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 474 IVINDVSYSYGY-G--SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred EEEEEEEEEcCC-C--CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 456777777741 1 2467889999999999999999999999999999987 4444443221
Q ss_pred ---cccc------------cc--CC--chhHHHHHHHhCC-----------cc-C------CCCCccchHhHHHHhcCCh
Q psy17138 110 ---GHRA------------YD--VG--TRGNQVVRELFGE-----------DI-A------LPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 110 ---~~~~------------~~--~~--~~~~~~~~~~~g~-----------~~-~------~~~~~~~r~~l~~~vf~~~ 152 (212)
.++. +. +. .......++..|. +. . -+.|+.+|-.+++.+.++|
T Consensus 551 ~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p 630 (708)
T TIGR01193 551 NYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS 630 (708)
T ss_pred EEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC
Confidence 0110 10 11 0111111221111 10 0 1346778889999999999
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+ +++++++-+++...+.+.+.+.+. ..+++++-+|-+.. ...||++++++
T Consensus 631 ~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~---~~~~D~i~~l~ 682 (708)
T TIGR01193 631 KVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV---AKQSDKIIVLD 682 (708)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH---HHcCCEEEEEE
Confidence 8 568889999999999998888764 24577777888754 35799999885
No 320
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.08 E-value=6.1e-10 Score=88.43 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=99.8
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCe-----eeeCCcc-----------ccc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAG-----LINCDQL-----------GHR 112 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~-----vi~~D~i-----------~~~ 112 (212)
+|..++.|...+ ...++++++....|.++.++|||||||||++++++++-.+ -++.-.| ..+
T Consensus 6 ~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~ 83 (259)
T COG4525 6 VSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNE 83 (259)
T ss_pred hhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccC
Confidence 444455554332 4567889999999999999999999999999999987221 1221111 011
Q ss_pred cccCCch---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138 113 AYDVGTR---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAI 162 (212)
Q Consensus 113 ~~~~~~~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~ 162 (212)
.+.|.-. ...+.....|..-. -+.|+.+|.-++..+--+|+ +++++-..+
T Consensus 84 ~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAl 163 (259)
T COG4525 84 ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGAL 163 (259)
T ss_pred ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhH
Confidence 1111100 11222333333221 14578889999999999998 446666677
Q ss_pred hHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeC
Q psy17138 163 WPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIP 209 (212)
Q Consensus 163 ~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~ 209 (212)
+...++.+++.+.++- ..++-+++-+|.+.|+= -+.++.++++-.
T Consensus 164 Da~tRe~mQelLldlw~~tgk~~lliTH~ieEAl--flatrLvvlsp~ 209 (259)
T COG4525 164 DALTREQMQELLLDLWQETGKQVLLITHDIEEAL--FLATRLVVLSPG 209 (259)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHH--hhhheeEEecCC
Confidence 7777888877775553 44566666699998873 366888777543
No 321
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.08 E-value=7.2e-11 Score=120.58 Aligned_cols=156 Identities=13% Similarity=0.063 Sum_probs=109.0
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------ccc-
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------HRA- 113 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------~~~- 113 (212)
..+++.+++|... ....++++++...+|++++|+|+|||||||++++|+|+ |...+++..+. +.+
T Consensus 929 L~I~nLsK~y~~~--~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 929 VCVKNLVKIFEPS--GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred EEEEeEEEEecCC--CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 4567777776321 12467889999999999999999999999999999997 33344432221 000
Q ss_pred ccCCc-------h---------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHH
Q psy17138 114 YDVGT-------R---------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMN 156 (212)
Q Consensus 114 ~~~~~-------~---------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~ 156 (212)
|.++. . ....+++.+|..-. -+.|+.+|..++..+..+|+ +++
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLD 1086 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD 1086 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 11110 0 11223344443211 12366778888888889988 668
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.+.++|..++.+++.+++.+ ....+++.+|.+.++ ..+||+++++.
T Consensus 1087 EPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea--~~laDrI~iL~ 1134 (2272)
T TIGR01257 1087 EPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEA--DLLGDRIAIIS 1134 (2272)
T ss_pred CCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence 9999999999999999998875 456888889999886 46899999875
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.07 E-value=2.3e-10 Score=105.23 Aligned_cols=152 Identities=12% Similarity=0.060 Sum_probs=100.2
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---ccccc-cCC
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHRAY-DVG 117 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~~~-~~~ 117 (212)
.+.+.+++|.. + ...++++++...+|.+++|+|+||||||||+++|+++ |...++.. .+ ..+.. .+.
T Consensus 6 ~~~nls~~~~~-~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~ 82 (552)
T TIGR03719 6 TMNRVSKVVPP-K--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPT 82 (552)
T ss_pred EEeeEEEecCC-C--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCC
Confidence 35566666641 1 1357889999999999999999999999999999986 32222211 11 00000 000
Q ss_pred chhH---------------------------------------------------------HHHHHHhCCccC------C
Q psy17138 118 TRGN---------------------------------------------------------QVVRELFGEDIA------L 134 (212)
Q Consensus 118 ~~~~---------------------------------------------------------~~~~~~~g~~~~------~ 134 (212)
.... ......+|.... -
T Consensus 83 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~L 162 (552)
T TIGR03719 83 KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKL 162 (552)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhc
Confidence 0000 001112222111 1
Q ss_pred CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 135 PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 135 ~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.|+.+|-.++..+..+|+ +++++.+.++|.....+.+.+.+. . ..+++-+|.+... ..+||+++++.
T Consensus 163 SgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~-~tvIiisHd~~~~--~~~~d~v~~l~ 232 (552)
T TIGR03719 163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--P-GTVVAVTHDRYFL--DNVAGWILELD 232 (552)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--C-CeEEEEeCCHHHH--HhhcCeEEEEE
Confidence 3467778899999999998 678999999999999999888764 2 3677779988653 56899999885
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.07 E-value=1.5e-10 Score=106.00 Aligned_cols=152 Identities=8% Similarity=0.028 Sum_probs=102.8
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---cccc---c
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHRA---Y 114 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~~---~ 114 (212)
..+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++.. .+ ..+. +
T Consensus 320 l~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 395 (530)
T PRK15064 320 LEVENLTKGFDN----GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDF 395 (530)
T ss_pred EEEEeeEEeeCC----ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccC
Confidence 346666666532 1356788999999999999999999999999999986 22222210 01 0110 0
Q ss_pred cCC----------------chhHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 115 DVG----------------TRGNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 115 ~~~----------------~~~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
.+. ......++..+|.. ..+ +.|+.+|..++..+..+|+ +++++.+.+++....
T Consensus 396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 475 (530)
T PRK15064 396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIE 475 (530)
T ss_pred CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 000 01122334445531 111 2367778889999999998 668999999999999
Q ss_pred HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+.+. + ..+++-+|.+.+. ..+||+++++.
T Consensus 476 ~l~~~l~~~--~-~tvi~vsHd~~~~--~~~~d~i~~l~ 509 (530)
T PRK15064 476 SLNMALEKY--E-GTLIFVSHDREFV--SSLATRIIEIT 509 (530)
T ss_pred HHHHHHHHC--C-CEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 999988875 2 3777779998764 46899999885
No 324
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.07 E-value=2.1e-10 Score=91.33 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=28.7
Q ss_pred CCCcEEEEEeccccc-cccccccCeEEEEEeCCC
Q psy17138 179 ESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 179 ~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~ 211 (212)
....+|++|+.+++. .++.++||.+|+|++|.+
T Consensus 109 ~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d 142 (187)
T cd02024 109 EDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYE 142 (187)
T ss_pred CCCcEEEEechHhcCCHHHHhhcCceeEecCCHH
Confidence 456799999999986 578899999999999976
No 325
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.07 E-value=2.1e-10 Score=96.46 Aligned_cols=153 Identities=16% Similarity=0.079 Sum_probs=98.8
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc-------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG------- 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~------- 110 (212)
.+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++- ...++...+.
T Consensus 26 ~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 26 DTQNLNLWYGE----DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred EEeeeEEEECC----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 34555555531 13567788999999999999999999999999999862 2223321110
Q ss_pred ---c-ccccCCc------hhHH----------------------HHHHHhCC--cc---C------CCCCccchHhHHHH
Q psy17138 111 ---H-RAYDVGT------RGNQ----------------------VVRELFGE--DI---A------LPDGSIDRKKLGAI 147 (212)
Q Consensus 111 ---~-~~~~~~~------~~~~----------------------~~~~~~g~--~~---~------~~~~~~~r~~l~~~ 147 (212)
. -.|.+.. ...+ ...+.++. .+ . -+.|+.+|-.++..
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lara 181 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARC 181 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 0 0011110 0000 11111110 00 0 12356677788888
Q ss_pred hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+..+|+ +++++.+.+++.....+.+.+.++.. ...+++.+|.+.+. ..+||+++++.
T Consensus 182 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i--~~~~d~i~~l~ 240 (271)
T PRK14238 182 LAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQA--ARISDKTAFFL 240 (271)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHH--HHhCCEEEEEE
Confidence 888888 56888899999999999999887754 46778889988663 57899999875
No 326
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.07 E-value=1.7e-10 Score=96.48 Aligned_cols=141 Identities=13% Similarity=0.061 Sum_probs=96.0
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc----------cc-cccCC-----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG----------HR-AYDVG----- 117 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~----------~~-~~~~~----- 117 (212)
..++++++...+|++++|+|+||||||||+++|+++.. ..++...+. +. .|.+.
T Consensus 22 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 101 (261)
T PRK14263 22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF 101 (261)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc
Confidence 35677889999999999999999999999999987631 122221110 00 01000
Q ss_pred -ch--------------------hHHHHHHHhCCc-----cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138 118 -TR--------------------GNQVVRELFGED-----IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIW 163 (212)
Q Consensus 118 -~~--------------------~~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~ 163 (212)
.. .....++.+|.. .. -+.|+.+|..++..+..+|+ +++++.+.++
T Consensus 102 ~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD 181 (261)
T PRK14263 102 SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181 (261)
T ss_pred cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 00 011223333321 00 13356678888888888888 5688899999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 164 PLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 164 p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.....+.+.+.++.. ...+++-+|.+.+. .++||+++++.
T Consensus 182 ~~~~~~l~~~l~~~~~-~~tii~isH~~~~i--~~~~d~v~~l~ 222 (261)
T PRK14263 182 PIATRRVEELMVELKK-DYTIALVTHNMQQA--IRVADTTAFFS 222 (261)
T ss_pred HHHHHHHHHHHHHHhc-CCeEEEEeCCHHHH--HHhCCEEEEEe
Confidence 9999999999988753 35777779988763 57899999985
No 327
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.07 E-value=8.4e-11 Score=108.77 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=101.8
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------ 109 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------ 109 (212)
..+++.++++. +. -..++++++...+|.+++|+|+||||||||+++|.++ |...++...+
T Consensus 335 I~~~~vsf~y~--~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 335 VEFDDVSFSYD--NS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred EEEEEEEEEeC--CC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 44666666653 11 1357888999999999999999999999999999987 4444443211
Q ss_pred ---cccccc-------------CC--chhHH---------HHHHHh--CCccC-------CCCCccchHhHHHHhcCChH
Q psy17138 110 ---GHRAYD-------------VG--TRGNQ---------VVRELF--GEDIA-------LPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 110 ---~~~~~~-------------~~--~~~~~---------~~~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~~ 153 (212)
.++.+. +. ..... ..+..+ |.+.. -+.|+.+|-.+++.+.++|+
T Consensus 412 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ 491 (588)
T PRK13657 412 AVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP 491 (588)
T ss_pred EEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 111110 10 01111 111111 11110 13467788899999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+-+++...+.+.+.+.+.. +.+++++-+|-+.. ...||+++.++
T Consensus 492 iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~---~~~~D~ii~l~ 543 (588)
T PRK13657 492 ILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLST---VRNADRILVFD 543 (588)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHH---HHhCCEEEEEE
Confidence 5688999999999999988887763 35677777888744 35799999885
No 328
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.07 E-value=1.7e-10 Score=99.74 Aligned_cols=155 Identities=15% Similarity=0.080 Sum_probs=102.9
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc-------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG------- 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~------- 110 (212)
.+++.+++|... .-..++++++...+|.++||+|+||||||||+++|.++. ...+++..+.
T Consensus 82 ~~~nls~~y~~~--~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~ 159 (329)
T PRK14257 82 EIRNFNFWYMNR--TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSL 159 (329)
T ss_pred EEEeeEEEecCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 456666666321 123578889999999999999999999999999999752 2223322221
Q ss_pred ---c-ccccCCc------hh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHH
Q psy17138 111 ---H-RAYDVGT------RG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAI 147 (212)
Q Consensus 111 ---~-~~~~~~~------~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~ 147 (212)
+ -.|.+.. .. +....+.++.. .. -+.|+.+|-.|++.
T Consensus 160 ~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARA 239 (329)
T PRK14257 160 ELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARA 239 (329)
T ss_pred hhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 0 0011110 00 11112222210 00 12366778889999
Q ss_pred hcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 148 VFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 148 vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+..+|+ +++++.+.+++.....+.+.++++.. ...+++-+|.+... .++||++++++
T Consensus 240 l~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i--~~~~Driivl~ 298 (329)
T PRK14257 240 IALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQA--QRISDETVFFY 298 (329)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 999998 56888999999999999999987754 36777779998764 46799999985
No 329
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.07 E-value=1.8e-10 Score=95.60 Aligned_cols=154 Identities=12% Similarity=0.037 Sum_probs=99.8
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc-------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG------- 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~------- 110 (212)
++++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++.. ..++...+.
T Consensus 7 ~~~~l~~~~~~----~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 7 SVKNLNLWYGS----KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EeeeEEEEECC----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 35555555531 135677889999999999999999999999999997631 122221110
Q ss_pred ---c-ccccCCc------hh-----------------------HHHHHHHhCCcc-----C------CCCCccchHhHHH
Q psy17138 111 ---H-RAYDVGT------RG-----------------------NQVVRELFGEDI-----A------LPDGSIDRKKLGA 146 (212)
Q Consensus 111 ---~-~~~~~~~------~~-----------------------~~~~~~~~g~~~-----~------~~~~~~~r~~l~~ 146 (212)
+ -.|.+.. .. .....+.+|..- . -+.|+.+|-.++.
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 162 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIAR 162 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHH
Confidence 0 0011110 00 012223334210 0 1234556777888
Q ss_pred HhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 147 IVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 147 ~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
.+..+|+ +++++.+.+++.....+.+.+.++.. ...+++.+|.+.+. ..+||++++++-
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~--~~~~d~i~~l~~ 223 (251)
T PRK14244 163 AIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMKQA--KKVSDRVAFFQS 223 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHH--HhhcCEEEEEEC
Confidence 8888887 56888889999999999998887753 46788889988753 468999998863
No 330
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=2e-10 Score=107.23 Aligned_cols=152 Identities=15% Similarity=0.121 Sum_probs=103.0
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---ccc---cc
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHR---AY 114 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~---~~ 114 (212)
..+.+..++|.. ...++++++...+|.++||+||||||||||+++|+++ |...++.. .+ ... .+
T Consensus 313 l~~~~l~~~y~~----~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l 388 (638)
T PRK10636 313 LKMEKVSAGYGD----RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFL 388 (638)
T ss_pred EEEEeeEEEeCC----eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhC
Confidence 456666666631 2356788999999999999999999999999999986 32222111 01 000 00
Q ss_pred cCCc---------------hhHHHHHHHhCCcc--C------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138 115 DVGT---------------RGNQVVRELFGEDI--A------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ 169 (212)
Q Consensus 115 ~~~~---------------~~~~~~~~~~g~~~--~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~ 169 (212)
.+.. .....++..|+... . -+.|+.+|..|+..+.++|+ +++++++.+++.....
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~ 468 (638)
T PRK10636 389 RADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQA 468 (638)
T ss_pred CccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 0000 01223344455321 1 13456778889989999988 6689999999999999
Q ss_pred HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.+.+. +. .|++.+|.+... ..+||++|++.
T Consensus 469 l~~~L~~~--~g-tvi~vSHd~~~~--~~~~d~i~~l~ 501 (638)
T PRK10636 469 LTEALIDF--EG-ALVVVSHDRHLL--RSTTDDLYLVH 501 (638)
T ss_pred HHHHHHHc--CC-eEEEEeCCHHHH--HHhCCEEEEEE
Confidence 99999876 23 677779998764 57899999885
No 331
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=1.9e-10 Score=98.40 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=98.1
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCccc-------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQLG------- 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i~------- 110 (212)
.+++.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++.. ..++...+.
T Consensus 47 ~i~nl~~~~~~----~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~ 122 (305)
T PRK14264 47 SVEDLDVYYGD----DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV 122 (305)
T ss_pred EEEEEEEEeCC----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence 46666666632 246788899999999999999999999999999998631 122221110
Q ss_pred ---c-ccccCCc------hh----------------------------------HHHHHHHhCCc-----cC------CC
Q psy17138 111 ---H-RAYDVGT------RG----------------------------------NQVVRELFGED-----IA------LP 135 (212)
Q Consensus 111 ---~-~~~~~~~------~~----------------------------------~~~~~~~~g~~-----~~------~~ 135 (212)
+ -.|.+.. .. ...+++.++.. .. -+
T Consensus 123 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 202 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLS 202 (305)
T ss_pred HHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCC
Confidence 0 0011110 00 01111222210 00 12
Q ss_pred CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEE
Q psy17138 136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIW 204 (212)
Q Consensus 136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~ 204 (212)
.|+.+|..|+..+.++|+ +++++.+.+++.....+.+.++++..+ ..+++.+|.+.+. ..+||+++
T Consensus 203 gGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~~~i--~~~~d~i~ 270 (305)
T PRK14264 203 GGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQQA--ARISDQTA 270 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCHHHH--HHhcCEEE
Confidence 356677788888889988 568888999999999999999887543 5788889988764 46899964
No 332
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.06 E-value=2.4e-10 Score=95.82 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=102.0
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG------ 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~------ 110 (212)
..+++..++|.. ...++++++...+|.+++|+|+||||||||+++|+++- ...++...+.
T Consensus 20 l~~~nl~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 20 MRARDVSVFYGE----KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred EEEEeEEEEECC----EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 345666666531 13567788999999999999999999999999999852 1223221110
Q ss_pred ----cc-cccCC------chh-----------------------HHHHHHHhCCc-----cC------CCCCccchHhHH
Q psy17138 111 ----HR-AYDVG------TRG-----------------------NQVVRELFGED-----IA------LPDGSIDRKKLG 145 (212)
Q Consensus 111 ----~~-~~~~~------~~~-----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~ 145 (212)
+. .|.+. ... .....+.+|.. .+ -+.|+.+|..++
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 00 01110 000 11222333431 01 123566788888
Q ss_pred HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+..+|+ +++++.+.+++...+.+.+.+++... ...+++.+|.+.+. ..+||++++++
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~--~~~~d~v~~l~ 236 (267)
T PRK14235 176 RAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQA--ARVSQRTAFFH 236 (267)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHH--HhhCCEEEEEE
Confidence 88888888 56888999999999999999987754 35788889988763 57899998875
No 333
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.06 E-value=1.6e-10 Score=104.78 Aligned_cols=155 Identities=13% Similarity=0.031 Sum_probs=102.0
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC------eeeeCCcc---------cc
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA------GLINCDQL---------GH 111 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~------~vi~~D~i---------~~ 111 (212)
..+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++-. ..++...+ .+
T Consensus 261 l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 261 IVLNNGVVSYND----RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred EEEeceEEEECC----eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 345555555531 135678899999999999999999999999999998622 12221000 00
Q ss_pred -ccccCC-------------------------------c---hhHHHHHHHhCCcc-C-C------CCCccchHhHHHHh
Q psy17138 112 -RAYDVG-------------------------------T---RGNQVVRELFGEDI-A-L------PDGSIDRKKLGAIV 148 (212)
Q Consensus 112 -~~~~~~-------------------------------~---~~~~~~~~~~g~~~-~-~------~~~~~~r~~l~~~v 148 (212)
-.|.+. . .....+++.+|... . + +.|+.+|..++..+
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al 416 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRAL 416 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHH
Confidence 000000 0 01123344455432 1 1 23566788888889
Q ss_pred cCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEecccccccccc-ccCeEEEEE
Q psy17138 149 FSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQD-QVHEIWVTF 207 (212)
Q Consensus 149 f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~-~~d~v~~v~ 207 (212)
..+|+ +++++.+.++|.....+.+.+.++. .+...+++-+|.+.+. .. +||+++++.
T Consensus 417 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~--~~~~~d~v~~l~ 477 (490)
T PRK10938 417 VKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA--PACITHRLEFVP 477 (490)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh--hhhhheeEEEec
Confidence 89988 5689999999999999999998876 3334577779998765 34 589998874
No 334
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=2.9e-10 Score=95.21 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=101.3
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC----------eeeeCCcc-------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA----------GLINCDQL------- 109 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~----------~vi~~D~i------- 109 (212)
..+.+.+++|.. ...++++++...+|++++|+|+||||||||+++|+++.. ..++...+
T Consensus 17 l~~~~l~~~~~~----~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 17 SEVNKLNFYYGG----YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred EEEEEEEEEECC----eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 456777777642 146788899999999999999999999999999998632 22322111
Q ss_pred -----ccc-cccCCc------hhH----------------------HHHHHHhCCc-----cC------CCCCccchHhH
Q psy17138 110 -----GHR-AYDVGT------RGN----------------------QVVRELFGED-----IA------LPDGSIDRKKL 144 (212)
Q Consensus 110 -----~~~-~~~~~~------~~~----------------------~~~~~~~g~~-----~~------~~~~~~~r~~l 144 (212)
.+. .|.+.. ... ....+..+.. .. -+.|+.+|-.|
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 172 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCI 172 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHH
Confidence 011 111110 100 1111122210 00 12345667788
Q ss_pred HHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 145 GAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 145 ~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+..+..+|+ +++++.+.+++.....+.+.+.++.. ...+++.+|.+.+. ..+||++++++
T Consensus 173 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~--~~~~d~i~~l~ 234 (265)
T PRK14252 173 ARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQA--ARVSDYTAYMY 234 (265)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 888888888 56888899999999999998887754 35777779988664 46899998875
No 335
>KOG0055|consensus
Probab=99.05 E-value=2.6e-10 Score=110.27 Aligned_cols=156 Identities=18% Similarity=0.183 Sum_probs=106.5
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
...+++.++|+.. .....+++.++..+.|..++|+|||||||||+..+|.++ |...+|..++.
T Consensus 988 I~~~~V~F~YPsR-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTR-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred EEEeeeEeeCCCC-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence 4566777777633 344666788999999999999999999999999999986 66667766541
Q ss_pred ----cc----------c--ccCCchhHHHHHH--------Hh----CC--c-------cCCCCCccchHhHHHHhcCChH
Q psy17138 111 ----HR----------A--YDVGTRGNQVVRE--------LF----GE--D-------IALPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 111 ----~~----------~--~~~~~~~~~~~~~--------~~----g~--~-------~~~~~~~~~r~~l~~~vf~~~~ 153 (212)
++ + |.......+++++ .| .. + ..-+.|+.+|-.+++.+..||.
T Consensus 1067 ~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPk 1146 (1228)
T KOG0055|consen 1067 GLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPK 1146 (1228)
T ss_pred ceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCC
Confidence 11 1 1100101111111 01 00 0 0114578899999999999999
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++-+..++-+-.+.+++.+..+..+ .++++-+|=|--- ..||.+.+++
T Consensus 1147 ILLLDEATSALDseSErvVQeALd~a~~g-RT~IvIAHRLSTI---qnaD~I~Vi~ 1198 (1228)
T KOG0055|consen 1147 ILLLDEATSALDSESERVVQEALDRAMEG-RTTIVIAHRLSTI---QNADVIAVLK 1198 (1228)
T ss_pred eeeeeccchhhhhhhHHHHHHHHHHhhcC-CcEEEEecchhhh---hcCCEEEEEE
Confidence 667888899999888888888887544 4555558877643 4689988875
No 336
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.05 E-value=1.1e-10 Score=106.69 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=91.9
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------ 109 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------ 109 (212)
..+++++++|... -..++++++..++|..++|+|+|||||||++++|.++ |...++.-.+
T Consensus 335 I~~~~vsf~Y~~~---~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 335 LELRDLSFGYPGS---PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred EEEEEEEEecCCC---CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheE
Confidence 4567777776421 1367889999999999999999999999999999986 4444443211
Q ss_pred --cccccc-------------CC--chhHHHHHHHhCC-----------cc-------CCCCCccchHhHHHHhcCChH-
Q psy17138 110 --GHRAYD-------------VG--TRGNQVVRELFGE-----------DI-------ALPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 110 --~~~~~~-------------~~--~~~~~~~~~~~g~-----------~~-------~~~~~~~~r~~l~~~vf~~~~- 153 (212)
.++.+. +. .+.....++..+. +. .-+.|+.+|-.+++.+.++|+
T Consensus 412 ~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 111111 10 0111111111111 10 013467889999999999998
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecc
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAV 190 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~ 190 (212)
.++++++-+++...+.+.+.+.+.. +.+++++-+|-
T Consensus 492 liLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHr 528 (529)
T TIGR02868 492 LLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHH 528 (529)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence 5688899999999999998887763 34566665663
No 337
>PLN02348 phosphoribulokinase
Probab=99.05 E-value=2.1e-10 Score=100.23 Aligned_cols=127 Identities=17% Similarity=0.128 Sum_probs=70.8
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHH-cCC--------------------eeeeCCccccccccCCchhHHHHHHHhCC
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLET-LGA--------------------GLINCDQLGHRAYDVGTRGNQVVRELFGE 130 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~-lg~--------------------~vi~~D~i~~~~~~~~~~~~~~~~~~~g~ 130 (212)
...++.+|||.|+|||||||+++.|.. |+. .+++.|..- .... ......|.
T Consensus 45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh----~~dr----~~r~~~g~ 116 (395)
T PLN02348 45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH----SLDR----TGRKEKGV 116 (395)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc----CCCh----hhHhhcCC
Confidence 346789999999999999999999985 431 345555421 1110 11111122
Q ss_pred ccCCCCCccchHhHHHHhcCChHHHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccc-cccccccCeEEEEEe
Q psy17138 131 DIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLS-AKWQDQVHEIWVTFI 208 (212)
Q Consensus 131 ~~~~~~~~~~r~~l~~~vf~~~~~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~ 208 (212)
..++. ...+...+. ++-..+..-..+..|.+.+.......... .+.+++|+|+..++- ..++++||.+|+|++
T Consensus 117 t~ldP-~a~dfDll~----~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~ 191 (395)
T PLN02348 117 TALDP-RANNFDLMY----EQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDI 191 (395)
T ss_pred ccCCc-ccccHHHHH----HHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCccccccCcEEEEEEC
Confidence 22211 122222221 11122222233455555554432211111 457899999987763 468899999999999
Q ss_pred CCC
Q psy17138 209 PEQ 211 (212)
Q Consensus 209 ~~~ 211 (212)
|++
T Consensus 192 ~~d 194 (395)
T PLN02348 192 SDD 194 (395)
T ss_pred CHH
Confidence 865
No 338
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=2.9e-10 Score=96.28 Aligned_cols=151 Identities=13% Similarity=0.107 Sum_probs=99.3
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCccc-------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQLG------- 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i~------- 110 (212)
.+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++- ...++...+.
T Consensus 41 ~i~~l~~~~~~----~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 116 (285)
T PRK14254 41 EARDLNVFYGD----EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116 (285)
T ss_pred EEEEEEEEECC----EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH
Confidence 45566665532 13678889999999999999999999999999999762 1122221110
Q ss_pred ---c-ccccCC------chh--------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHhc
Q psy17138 111 ---H-RAYDVG------TRG--------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIVF 149 (212)
Q Consensus 111 ---~-~~~~~~------~~~--------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf 149 (212)
+ -.|.+. ... ....++.+|.. .. -+.|+.+|-.|+..+.
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~ 196 (285)
T PRK14254 117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA 196 (285)
T ss_pred hhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 0 001110 000 11223333321 01 1235667888888888
Q ss_pred CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEE
Q psy17138 150 SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWV 205 (212)
Q Consensus 150 ~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~ 205 (212)
++|+ +++++.+.+++.....+.+.++++..+ ..+++.+|.+.+. ..+||++++
T Consensus 197 ~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~~i--~~~~dri~v 251 (285)
T PRK14254 197 PDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQA--ARISDKTAV 251 (285)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHH--HhhcCEEEE
Confidence 9988 568889999999999999999887543 5778889988764 468999754
No 339
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.05 E-value=3.6e-10 Score=95.63 Aligned_cols=140 Identities=13% Similarity=0.102 Sum_probs=89.7
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC-------Cc------ccccccc--C-CchhHH
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC-------DQ------LGHRAYD--V-GTRGNQ 122 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~-------D~------i~~~~~~--~-~~~~~~ 122 (212)
..++++++...+|.+++|+|+||||||||+++|+++ |...++. +. +...+.. . ......
T Consensus 51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~ 130 (282)
T cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYK 130 (282)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHH
Confidence 366778899999999999999999999999999986 3222211 10 0000000 0 000111
Q ss_pred HHHHHhCCc------------------cCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH-HhhcCCC
Q psy17138 123 VVRELFGED------------------IALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI-ARLSESH 181 (212)
Q Consensus 123 ~~~~~~g~~------------------~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i-~~~~~~~ 181 (212)
.....++.. ..-+.|+.+|-.++..+..+|+ +++++.+.++|.....+.+.+ ..+.. .
T Consensus 131 ~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~-~ 209 (282)
T cd03291 131 SVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA-N 209 (282)
T ss_pred HHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhC-C
Confidence 112211210 0113456678888888889988 568888999999988887654 44433 3
Q ss_pred cEEEEEeccccccccccccCeEEEEE
Q psy17138 182 KVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 182 ~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+++.+|.+.+. ..||+++++.
T Consensus 210 ~tIiiisH~~~~~---~~~d~i~~l~ 232 (282)
T cd03291 210 KTRILVTSKMEHL---KKADKILILH 232 (282)
T ss_pred CEEEEEeCChHHH---HhCCEEEEEE
Confidence 5777779988764 3699998875
No 340
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.04 E-value=3e-10 Score=104.52 Aligned_cols=158 Identities=16% Similarity=0.072 Sum_probs=103.2
Q ss_pred cceechhhhhhhhcc-ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------
Q psy17138 47 DKLSSSNLRMRELGT-LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~-~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------- 110 (212)
..+++++++|..... ....++++++..++|.+++|+|||||||||++++|.++ |...++...+.
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 417 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhh
Confidence 456677777643211 12357889999999999999999999999999999986 43344432221
Q ss_pred -----cccc----------cCC--chhHHHHHHHhCCccC-------------CCCCccchHhHHHHhcCChH--HHHHH
Q psy17138 111 -----HRAY----------DVG--TRGNQVVRELFGEDIA-------------LPDGSIDRKKLGAIVFSNKD--EMNKL 158 (212)
Q Consensus 111 -----~~~~----------~~~--~~~~~~~~~~~g~~~~-------------~~~~~~~r~~l~~~vf~~~~--~~~~~ 158 (212)
++.+ .+. .......++..+..-. -+.|+.+|-.+++.+..+|+ +++++
T Consensus 418 i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ 497 (555)
T TIGR01194 418 FSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEW 497 (555)
T ss_pred CcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1100 000 0111223333332211 13467788899999999998 66888
Q ss_pred HhhhhHHHHHHHHHHHH-hhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 159 NQAIWPLILAQVKEEIA-RLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 159 ~~i~~p~~~~~~~~~i~-~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+++...+.+.+.+. ......+++++-+|-+.. ...||++++++
T Consensus 498 ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~---~~~~d~i~~l~ 544 (555)
T TIGR01194 498 AADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY---FELADQIIKLA 544 (555)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH---HHhCCEEEEEE
Confidence 99999999998876553 333345677777898743 35899999885
No 341
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.04 E-value=1.3e-10 Score=107.16 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=101.2
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------ 109 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------ 109 (212)
..++..++++... ....++++++..++|.+++|+|+||||||||+++|.++ |...++...+
T Consensus 314 I~~~~v~~~y~~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 314 LDVNIRQFTYPQT--DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred EEEEEEEEECCCC--CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 4466666666421 12357888999999999999999999999999999986 3333332111
Q ss_pred ---ccccc-------------cCC--chhHHHHHHHhCC-----------ccC-------CCCCccchHhHHHHhcCChH
Q psy17138 110 ---GHRAY-------------DVG--TRGNQVVRELFGE-----------DIA-------LPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 110 ---~~~~~-------------~~~--~~~~~~~~~~~g~-----------~~~-------~~~~~~~r~~l~~~vf~~~~ 153 (212)
.++.+ .+. ........+..+. +.. -+.|+.+|-.+++.+.++|+
T Consensus 392 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ 471 (569)
T PRK10789 392 AVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE 471 (569)
T ss_pred EEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 00100 010 0011111111111 100 13356778889999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++...+.+.+.+.+.. ..+++++-+|-+.. ...||++++++
T Consensus 472 illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~---~~~~d~i~~l~ 523 (569)
T PRK10789 472 ILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA---LTEASEILVMQ 523 (569)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH---HHcCCEEEEEe
Confidence 5688999999999999999888764 45677777888744 35699998875
No 342
>PLN03211 ABC transporter G-25; Provisional
Probab=99.04 E-value=3.4e-10 Score=106.01 Aligned_cols=143 Identities=15% Similarity=0.093 Sum_probs=99.4
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-------eeeeCCccc----c-cccc----------------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-------GLINCDQLG----H-RAYD---------------- 115 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-------~vi~~D~i~----~-~~~~---------------- 115 (212)
..++++++..++|++++|+||||||||||+++|+++.. ..+++..+. + -.|.
T Consensus 82 ~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 161 (659)
T PLN03211 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETL 161 (659)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHH
Confidence 46788899999999999999999999999999998622 223221110 0 0010
Q ss_pred --------CCc-------hhHHHHHHHhCCccC------------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138 116 --------VGT-------RGNQVVRELFGEDIA------------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI 166 (212)
Q Consensus 116 --------~~~-------~~~~~~~~~~g~~~~------------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~ 166 (212)
+.. ...+.+++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.+++..
T Consensus 162 ~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~ 241 (659)
T PLN03211 162 VFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATA 241 (659)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHH
Confidence 000 012233444444211 13567788899999999998 5688999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
...+.+.++++......+++.+|.+.. ...++||+++++.
T Consensus 242 ~~~l~~~L~~l~~~g~TvI~~sH~~~~-~i~~~~D~iilL~ 281 (659)
T PLN03211 242 AYRLVLTLGSLAQKGKTIVTSMHQPSS-RVYQMFDSVLVLS 281 (659)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCCCH-HHHHhhceEEEec
Confidence 999999998876446788888998762 1246899998874
No 343
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.03 E-value=2.9e-10 Score=104.38 Aligned_cols=156 Identities=17% Similarity=0.076 Sum_probs=101.5
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR 112 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~ 112 (212)
...+++.+++|.. . ...++++++..++|..++|+|+||||||||+++|.++ |...++.-.+. +.
T Consensus 322 ~i~~~~v~f~y~~--~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 398 (547)
T PRK10522 322 TLELRNVTFAYQD--N-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL 398 (547)
T ss_pred eEEEEEEEEEeCC--C-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhh
Confidence 3456666676641 1 1357888999999999999999999999999999986 33333322111 00
Q ss_pred -cccCC-----------------chhHHHHHHHhCCccC------------CCCCccchHhHHHHhcCChH--HHHHHHh
Q psy17138 113 -AYDVG-----------------TRGNQVVRELFGEDIA------------LPDGSIDRKKLGAIVFSNKD--EMNKLNQ 160 (212)
Q Consensus 113 -~~~~~-----------------~~~~~~~~~~~g~~~~------------~~~~~~~r~~l~~~vf~~~~--~~~~~~~ 160 (212)
.|.++ .......++.+|.... -+.|+.+|-.+++.+.++|+ +++++++
T Consensus 399 i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts 478 (547)
T PRK10522 399 FSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAA 478 (547)
T ss_pred eEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 01111 0111222333332210 13467778889999999998 5688899
Q ss_pred hhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 161 AIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 161 i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+++...+.+.+.+.+.. ...+.+++-+|-+.. ...||++++++
T Consensus 479 ~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~---~~~~d~i~~l~ 523 (547)
T PRK10522 479 DQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY---FIHADRLLEMR 523 (547)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH---HHhCCEEEEEE
Confidence 999999888877775432 234567777887633 35799999886
No 344
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.03 E-value=3.8e-10 Score=94.09 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=99.2
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR- 112 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~- 112 (212)
..+.+.+++|... ....++++++...+|.+++|+|+||||||||+++|+++ |...++...+. +.
T Consensus 20 i~~~~l~~~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i 97 (257)
T cd03288 20 IKIHDLCVRYENN--LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRL 97 (257)
T ss_pred EEEEEEEEEeCCC--CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhE
Confidence 3455665655321 12356778899999999999999999999999999987 33333321110 00
Q ss_pred cccCC--------------------chhHHHHHHHhCC-----------cc-------CCCCCccchHhHHHHhcCChH-
Q psy17138 113 AYDVG--------------------TRGNQVVRELFGE-----------DI-------ALPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 113 ~~~~~--------------------~~~~~~~~~~~g~-----------~~-------~~~~~~~~r~~l~~~vf~~~~- 153 (212)
.|.+. ...........+. +. .-+.|+.+|..++..+..+|+
T Consensus 98 ~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 177 (257)
T cd03288 98 SIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSI 177 (257)
T ss_pred EEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 01000 0001111111111 10 012356677888888888888
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++...++|.....+.+.+.+... ...+++.+|.+.+.. .||+++++.
T Consensus 178 lllDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~---~~dri~~l~ 228 (257)
T cd03288 178 LIMDEATASIDMATENILQKVVMTAFA-DRTVVTIAHRVSTIL---DADLVLVLS 228 (257)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHhcC-CCEEEEEecChHHHH---hCCEEEEEE
Confidence 55788888999999999888877643 467788899987752 499999885
No 345
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.03 E-value=9.9e-11 Score=110.28 Aligned_cols=155 Identities=18% Similarity=0.160 Sum_probs=102.3
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..+.+.+++|... .-..++++++..++|..++|+|+||||||||+++|.++ |...+++-.+.
T Consensus 456 i~~~~vsf~y~~~--~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 456 ITFENIRFRYAPD--SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred EEEEEEEEEcCCC--CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 4566666666421 12357788999999999999999999999999999986 44444432221
Q ss_pred ----cccc-------------cCC--chhHH---------HHHHHh--CCccC-------CCCCccchHhHHHHhcCChH
Q psy17138 111 ----HRAY-------------DVG--TRGNQ---------VVRELF--GEDIA-------LPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 111 ----~~~~-------------~~~--~~~~~---------~~~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~~ 153 (212)
++.+ .+. ..... ..+..+ |.+.. -+.|+.+|-.+++.+.++|+
T Consensus 534 ~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ 613 (694)
T TIGR01846 534 GVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPR 613 (694)
T ss_pred eEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 1100 000 00011 111111 11110 13467788899999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++...+.+.+.+.+.. ..+++++-+|-+... ..||++++++
T Consensus 614 ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~---~~~d~ii~l~ 665 (694)
T TIGR01846 614 ILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTV---RACDRIIVLE 665 (694)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHH---HhCCEEEEEe
Confidence 5688899999999999999888764 345677778887543 4699998885
No 346
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.03 E-value=1.5e-10 Score=107.11 Aligned_cols=154 Identities=17% Similarity=0.136 Sum_probs=101.9
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------ 109 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------ 109 (212)
..+++.+++|... -..++++++..++|..++|+|+||||||||+++|.++ |...++...+
T Consensus 335 i~~~~v~~~y~~~---~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 335 VEFRHITFEFANS---SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred EEEEEEEEECCCC---CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 4566666666421 1357888999999999999999999999999999986 4334433211
Q ss_pred ---cccccc-------------CC--chhHHH---------HHHHh--CCcc-C------CCCCccchHhHHHHhcCChH
Q psy17138 110 ---GHRAYD-------------VG--TRGNQV---------VRELF--GEDI-A------LPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 110 ---~~~~~~-------------~~--~~~~~~---------~~~~~--g~~~-~------~~~~~~~r~~l~~~vf~~~~ 153 (212)
.++.+. +. ...... .+... |.+. . -+.|+.+|-.+++.+..+|+
T Consensus 412 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ 491 (585)
T TIGR01192 412 ATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP 491 (585)
T ss_pred EEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 111110 10 000001 11111 1110 0 13467788899999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++...+.+.+.+.+.. ..+++++-+|-+... ..||++++++
T Consensus 492 ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~---~~~d~i~~l~ 543 (585)
T TIGR01192 492 ILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTV---RNADLVLFLD 543 (585)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHH---HcCCEEEEEE
Confidence 5688899999999999998887764 356777779988553 4699999885
No 347
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.03 E-value=1.4e-10 Score=109.66 Aligned_cols=154 Identities=17% Similarity=0.165 Sum_probs=99.5
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------ 109 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------ 109 (212)
..+.+++++|.... ....++++++..++|+.++|+|+|||||||++++|.++ |...+|+..+
T Consensus 479 I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 557 (711)
T TIGR00958 479 IEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557 (711)
T ss_pred EEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhc
Confidence 45667777664211 12457889999999999999999999999999999987 4444443222
Q ss_pred ---ccccccCCc---------------hhHHHH---------HHHh--CCcc-C------CCCCccchHhHHHHhcCChH
Q psy17138 110 ---GHRAYDVGT---------------RGNQVV---------RELF--GEDI-A------LPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 110 ---~~~~~~~~~---------------~~~~~~---------~~~~--g~~~-~------~~~~~~~r~~l~~~vf~~~~ 153 (212)
.++.+.... ...... ++.+ |.+. . -+.|+.+|-.+++.+.++|+
T Consensus 558 ~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ 637 (711)
T TIGR00958 558 ALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPR 637 (711)
T ss_pred eEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 111111110 111111 1111 1110 0 13467788899999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.++++++-+++...+.+.+ ... ...+++++-+|-+.. -..||++++++
T Consensus 638 ILILDEpTSaLD~~te~~i~~-~~~--~~~~TvIiItHrl~~---i~~aD~IivL~ 687 (711)
T TIGR00958 638 VLILDEATSALDAECEQLLQE-SRS--RASRTVLLIAHRLST---VERADQILVLK 687 (711)
T ss_pred EEEEEccccccCHHHHHHHHH-hhc--cCCCeEEEEeccHHH---HHhCCEEEEEE
Confidence 5688888999988777766 222 345677777998754 35699999885
No 348
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.03 E-value=1.7e-10 Score=106.30 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=100.8
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
-...++.+.|.. .-...+++++..++|+.+||+|+|||||||+++.|.++ |...+|.-++.
T Consensus 329 I~f~~vsf~y~~---~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 329 IEFENVSFSYPG---KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred EEEEEEEEEcCC---CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 345555555532 22456778899999999999999999999999999986 54555432221
Q ss_pred ----ccc----------ccCCc------hh--------HHHHHHHh--CCccC-C------CCCccchHhHHHHhcCChH
Q psy17138 111 ----HRA----------YDVGT------RG--------NQVVRELF--GEDIA-L------PDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 111 ----~~~----------~~~~~------~~--------~~~~~~~~--g~~~~-~------~~~~~~r~~l~~~vf~~~~ 153 (212)
++. ...+. .. ....+..+ |.+.. . +.|+.+|-.+++.+..+|.
T Consensus 406 ~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ 485 (567)
T COG1132 406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP 485 (567)
T ss_pred cEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 111 11110 00 11112222 11111 1 2367889999999999997
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
.+++.++-+++.....+.+.+.+.. +++++++=+|-+-. + ..||++++++-
T Consensus 486 ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i-~~aD~IiVl~~ 538 (567)
T COG1132 486 ILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--I-KNADRIIVLDN 538 (567)
T ss_pred EEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--H-HhCCEEEEEEC
Confidence 5688888999999999988887654 33566666888743 2 34999999863
No 349
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=5.9e-10 Score=92.39 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=92.2
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----------CCeeeeCCccc----------c-ccccCCc-----
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----------GAGLINCDQLG----------H-RAYDVGT----- 118 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----------g~~vi~~D~i~----------~-~~~~~~~----- 118 (212)
.++++++...+|.+++|+|+||||||||+++|+++ |...++...+. + -.|.+..
T Consensus 18 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14266 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFP 97 (250)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCc
Confidence 56778889999999999999999999999999975 22222221110 0 0111100
Q ss_pred -hh----------------------HHHHHHHhCCc-----cC------CCCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138 119 -RG----------------------NQVVRELFGED-----IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAI 162 (212)
Q Consensus 119 -~~----------------------~~~~~~~~g~~-----~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~ 162 (212)
.. .....+.+|.. .. -+.|+.+|-.++..+..+|+ +++++.+.+
T Consensus 98 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gL 177 (250)
T PRK14266 98 KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSAL 177 (250)
T ss_pred chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccC
Confidence 00 01112222210 00 12356667788888888888 568889999
Q ss_pred hHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 163 WPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 163 ~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.....+.+.+.+... ...+++.+|.+.+. ..+||++++++
T Consensus 178 D~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~--~~~~~~i~~l~ 219 (250)
T PRK14266 178 DPISTTKIEDLIHKLKE-DYTIVIVTHNMQQA--TRVSKYTSFFL 219 (250)
T ss_pred CHHHHHHHHHHHHHHhc-CCeEEEEECCHHHH--HhhcCEEEEEE
Confidence 99999999999987754 45777778888764 46889988764
No 350
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.01 E-value=1.9e-10 Score=107.37 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=101.1
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---ccc--ccc
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHR--AYD 115 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~--~~~ 115 (212)
..+.+.+++|.. ...++++++...+|.++||+|+||||||||+++|+++ |...+..+ .+ ... .+.
T Consensus 320 l~~~~l~~~~~~----~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~ 395 (635)
T PRK11147 320 FEMENVNYQIDG----KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELD 395 (635)
T ss_pred EEEeeeEEEECC----eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccC
Confidence 456666666632 1356788999999999999999999999999999986 32222111 01 000 000
Q ss_pred CCch-------------------hHHHHHHHhCCc--cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138 116 VGTR-------------------GNQVVRELFGED--IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI 166 (212)
Q Consensus 116 ~~~~-------------------~~~~~~~~~g~~--~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~ 166 (212)
+... ....++..|+.. .. -+.|+.+|..|+..+..+|. +++++.+.+++..
T Consensus 396 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~ 475 (635)
T PRK11147 396 PEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET 475 (635)
T ss_pred CCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 0000 112233344431 11 13466778888888888888 6689999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
...+.+.+.+. + ..+++-+|.+... ..+||++|++.
T Consensus 476 ~~~l~~~l~~~--~-~tvi~vSHd~~~~--~~~~d~i~~l~ 511 (635)
T PRK11147 476 LELLEELLDSY--Q-GTVLLVSHDRQFV--DNTVTECWIFE 511 (635)
T ss_pred HHHHHHHHHhC--C-CeEEEEECCHHHH--HHhcCEEEEEe
Confidence 99998888764 2 3677779998764 47899999885
No 351
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.01 E-value=4.7e-10 Score=86.63 Aligned_cols=53 Identities=34% Similarity=0.613 Sum_probs=49.3
Q ss_pred CeEecccchhhHHHHHHHHHHCCCCCccEEEeecccCCCCCCcccccceechhhhhhhh
Q psy17138 1 NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMREL 59 (212)
Q Consensus 1 ~~vvs~et~~~~~~in~~r~~~gl~~l~~~~i~~~~~~~~~~~~~~~~iss~~~r~~~~ 59 (212)
+||||+||..|+.+||+.|+++|++||++++++++. + .++.++|||++|....
T Consensus 91 ~ivvs~et~~~~~~in~~r~~~gl~~l~i~~v~~~~-~-----~~~~~~SSt~Ir~~~~ 143 (153)
T PRK00777 91 AIVVSPETYPGALKINEIRRERGLKPLEIVVIDFVL-A-----EDGKPISSTRIRRGEI 143 (153)
T ss_pred EEEEChhhhhhHHHHHHHHHHCCCCceEEEEEeeee-c-----CCCCeeeHHHHHHhhh
Confidence 589999999999999999999999999999999999 6 5789999999998764
No 352
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.00 E-value=4.4e-10 Score=92.21 Aligned_cols=126 Identities=19% Similarity=0.299 Sum_probs=67.0
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc-----CC-ee-eeCCccccccccCCchhHHHHHHHhCCccC-CCCCccchHhH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL-----GA-GL-INCDQLGHRAYDVGTRGNQVVRELFGEDIA-LPDGSIDRKKL 144 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~-~v-i~~D~i~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~r~~l 144 (212)
..++.++||+|+||||||||++.|.++ |. .+ +..|.. +.+. . .....|.... .....++...+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~----~~~~-~----~~~~~g~~~~~~~~~~~d~~~~ 100 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF----HLDN-A----VLDAHGLRPRKGAPETFDVAGL 100 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc----cCCH-H----HHHhcccccccCCCCCCCHHHH
Confidence 556899999999999999999999864 21 23 555431 1111 0 1111111100 00112222222
Q ss_pred HHHhcCChHHHHHH-HhhhhHHHHHHHHHHHHhhc---CCCcEEEEEeccccc--cc---cccccCeEEEEEeCCC
Q psy17138 145 GAIVFSNKDEMNKL-NQAIWPLILAQVKEEIARLS---ESHKVIVIEAAVLLS--AK---WQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 145 ~~~vf~~~~~~~~~-~~i~~p~~~~~~~~~i~~~~---~~~~~vvie~~~l~e--~~---~~~~~d~v~~v~~~~~ 211 (212)
...+ ..+..- +.+.+|.+.+...+.+.... ....++++|+.+++. .+ +..+||.+|++++|.+
T Consensus 101 ~~~l----~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~ 172 (229)
T PRK09270 101 AALL----RRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAE 172 (229)
T ss_pred HHHH----HHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHH
Confidence 1111 111100 13455555544443332221 246799999998863 23 3459999999999975
No 353
>PLN03073 ABC transporter F family; Provisional
Probab=98.99 E-value=6.1e-10 Score=105.11 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=100.9
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC---------Cc----
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC---------DQ---- 108 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~---------D~---- 108 (212)
..+++.+++|.. ....++++++...+|.+++|+|+||||||||+++|+++ |...++. +.
T Consensus 509 L~~~~ls~~y~~---~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l 585 (718)
T PLN03073 509 ISFSDASFGYPG---GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGL 585 (718)
T ss_pred EEEEeeEEEeCC---CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccC
Confidence 345555555521 11246778899999999999999999999999999986 3222111 00
Q ss_pred -cccc-c-c----cCC--chhHHHHHHHhCCc--cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHH
Q psy17138 109 -LGHR-A-Y----DVG--TRGNQVVRELFGED--IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQ 169 (212)
Q Consensus 109 -i~~~-~-~----~~~--~~~~~~~~~~~g~~--~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~ 169 (212)
+... . + .+. ......++..+|.. .. -+.|+.+|..|+..+..+|. +++++.+.+++.....
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~ 665 (718)
T PLN03073 586 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEA 665 (718)
T ss_pred CcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 0000 0 0 000 11223445555543 11 13467778889989999998 6689999999999888
Q ss_pred HHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 170 VKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 170 ~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.+.+. +. .+++-+|.+... ..+||++|++.
T Consensus 666 l~~~L~~~--~g-tvIivSHd~~~i--~~~~drv~~l~ 698 (718)
T PLN03073 666 LIQGLVLF--QG-GVLMVSHDEHLI--SGSVDELWVVS 698 (718)
T ss_pred HHHHHHHc--CC-EEEEEECCHHHH--HHhCCEEEEEE
Confidence 87777653 23 677779998764 56899999885
No 354
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.99 E-value=8.3e-10 Score=88.26 Aligned_cols=126 Identities=11% Similarity=0.076 Sum_probs=83.1
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-----ccccC-------Cch------------
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH-----RAYDV-------GTR------------ 119 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~-----~~~~~-------~~~------------ 119 (212)
+++...+|++++|+|+||||||||+++|+++ |...++...+.. -.|.+ ...
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~ 98 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY 98 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhc
Confidence 6788899999999999999999999999987 434443322110 00111 000
Q ss_pred ----hHHHHHHHhCCcc-C------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEE
Q psy17138 120 ----GNQVVRELFGEDI-A------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVI 186 (212)
Q Consensus 120 ----~~~~~~~~~g~~~-~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvi 186 (212)
......+.+|... . -+.|+.+|-.++..+..+|+ +++++.+.++|...+.+.+.++........+++
T Consensus 99 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 178 (195)
T PRK13541 99 NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLL 178 (195)
T ss_pred ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 1122223334321 1 12356667788888888887 568888999999999999888654334567788
Q ss_pred Eecccccc
Q psy17138 187 EAAVLLSA 194 (212)
Q Consensus 187 e~~~l~e~ 194 (212)
.+|.+.+.
T Consensus 179 ~sh~~~~i 186 (195)
T PRK13541 179 SSHLESSI 186 (195)
T ss_pred EeCCcccc
Confidence 78887654
No 355
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.99 E-value=2.3e-10 Score=105.48 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=100.7
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------ 109 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------ 109 (212)
-.+++.++++.... ....++++++..++|+.++|+|+||||||||++.|.++ |...++...+
T Consensus 338 i~~~~v~f~y~~~~-~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 338 IEFEQVNFAYPARP-DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred EEEEEEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 34555556553211 12356778899999999999999999999999999987 3333433111
Q ss_pred ---ccccc-------------cCC--chhHH---------HHHHHh--CCccC-------CCCCccchHhHHHHhcCChH
Q psy17138 110 ---GHRAY-------------DVG--TRGNQ---------VVRELF--GEDIA-------LPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 110 ---~~~~~-------------~~~--~~~~~---------~~~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~~ 153 (212)
.++.+ .+. ..... ..+..+ |.+.. -+.|+.+|-.+++.+..+|+
T Consensus 417 ~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ 496 (576)
T TIGR02204 417 ALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP 496 (576)
T ss_pred eEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 01110 000 01111 112222 11110 12367788899999999988
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+-+++...+.+.+.+++.. ..+++++-+|-+.. ...||+++.++
T Consensus 497 ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~---~~~~d~vi~l~ 548 (576)
T TIGR02204 497 ILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLAT---VLKADRIVVMD 548 (576)
T ss_pred eEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHH---HHhCCEEEEEE
Confidence 5688899999999998988887764 34677777888743 36799998875
No 356
>PRK05439 pantothenate kinase; Provisional
Probab=98.98 E-value=3.1e-10 Score=96.87 Aligned_cols=127 Identities=19% Similarity=0.235 Sum_probs=73.6
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc-C-------CeeeeCCccccccccCCchh-HHHHHHHhCCccCCCCCccchH
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL-G-------AGLINCDQLGHRAYDVGTRG-NQVVRELFGEDIALPDGSIDRK 142 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l-g-------~~vi~~D~i~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~r~ 142 (212)
....+++|||+|++||||||+++.|..+ + ..++..|.. |.+.... ..+....+| ....+|..
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF----y~~~~~l~~~~l~~~kg-----~Pes~D~~ 152 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF----LYPNAVLEERGLMKRKG-----FPESYDMR 152 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc----ccCHHHHhhhhccccCC-----CcccccHH
Confidence 3567899999999999999999999853 1 234555532 2222110 001111112 12245554
Q ss_pred hHHHHhcCChHHHHHHH-hhhhHHHHHHHHHHHHhh-c--CCCcEEEEEeccccc-ccc------ccccCeEEEEEeCCC
Q psy17138 143 KLGAIVFSNKDEMNKLN-QAIWPLILAQVKEEIARL-S--ESHKVIVIEAAVLLS-AKW------QDQVHEIWVTFIPEQ 211 (212)
Q Consensus 143 ~l~~~vf~~~~~~~~~~-~i~~p~~~~~~~~~i~~~-~--~~~~~vvie~~~l~e-~~~------~~~~d~v~~v~~~~~ 211 (212)
.+...+ ..+..-. .+..|.+.+...+++... . .+..++++||.+++. ... ++++|..|+|++|.+
T Consensus 153 ~l~~~L----~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~ 228 (311)
T PRK05439 153 ALLRFL----SDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADED 228 (311)
T ss_pred HHHHHH----HHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHH
Confidence 443222 1111112 255566666666554221 1 467899999987663 222 789999999999975
No 357
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.98 E-value=1.2e-09 Score=87.79 Aligned_cols=141 Identities=16% Similarity=0.090 Sum_probs=82.3
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-C----CeeeeCCcc-----------------------------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-G----AGLINCDQL----------------------------- 109 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-g----~~vi~~D~i----------------------------- 109 (212)
+-++++++..+.|++.+|+|||||||||++|.|++. . -..++.-.+
T Consensus 15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~e 94 (259)
T COG4559 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQE 94 (259)
T ss_pred eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHH
Confidence 346778899999999999999999999999999963 1 111111100
Q ss_pred ----ccccccCCch--h----HHHHHHHh------CCccC-CCCCccchHhHHHHhcCC--hH------HHHHHHhhhhH
Q psy17138 110 ----GHRAYDVGTR--G----NQVVRELF------GEDIA-LPDGSIDRKKLGAIVFSN--KD------EMNKLNQAIWP 164 (212)
Q Consensus 110 ----~~~~~~~~~~--~----~~~~~~~~------g~~~~-~~~~~~~r~~l~~~vf~~--~~------~~~~~~~i~~p 164 (212)
++-.+..+.. . .+...... +.++. -+.|..+|..+++.+-|- |. +++++.+-++.
T Consensus 95 VV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi 174 (259)
T COG4559 95 VVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174 (259)
T ss_pred HHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccch
Confidence 0000100000 0 11111111 11111 135667788887665542 11 45667777777
Q ss_pred HHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 165 LILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 165 ~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.-.+.+.+..+++. .+. .|+.--|.|.-+ ..+||+++.+.
T Consensus 175 ~HQ~~tl~laR~la~~g~-~V~~VLHDLNLA--A~YaDrivll~ 215 (259)
T COG4559 175 AHQHHTLRLARQLAREGG-AVLAVLHDLNLA--AQYADRIVLLH 215 (259)
T ss_pred HHHHHHHHHHHHHHhcCC-cEEEEEccchHH--HHhhheeeeee
Confidence 77777777777665 443 444447887755 36999998763
No 358
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.98 E-value=7.5e-10 Score=101.92 Aligned_cols=152 Identities=15% Similarity=0.106 Sum_probs=102.3
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---ccc--ccc
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHR--AYD 115 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~--~~~ 115 (212)
..+++.++.|.. ...++++++...+|.++||+|+||||||||+++|+++ |...+..+ .+ ..+ .+.
T Consensus 325 l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~ 400 (556)
T PRK11819 325 IEAENLSKSFGD----RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALD 400 (556)
T ss_pred EEEEeEEEEECC----eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcC
Confidence 445565555531 1366788999999999999999999999999999986 32222211 01 111 000
Q ss_pred CC-------------------chhHHHHHHHhCCc--cCC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138 116 VG-------------------TRGNQVVRELFGED--IAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI 166 (212)
Q Consensus 116 ~~-------------------~~~~~~~~~~~g~~--~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~ 166 (212)
+. .......+..+|.. ..+ +.|+.+|..++..+..+|+ +++++.+.+++..
T Consensus 401 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 480 (556)
T PRK11819 401 PNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVET 480 (556)
T ss_pred CCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 00 00112344555542 111 2356778889989989998 6689999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
...+.+.+.+.. . .+++-+|.+.+. ..+||+++++.
T Consensus 481 ~~~l~~~l~~~~--~-tvi~vtHd~~~~--~~~~d~i~~l~ 516 (556)
T PRK11819 481 LRALEEALLEFP--G-CAVVISHDRWFL--DRIATHILAFE 516 (556)
T ss_pred HHHHHHHHHhCC--C-eEEEEECCHHHH--HHhCCEEEEEE
Confidence 999999998752 3 566779998764 47899999885
No 359
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.98 E-value=7.3e-10 Score=101.92 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=103.2
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc---cccc--cc
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL---GHRA--YD 115 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i---~~~~--~~ 115 (212)
..+.+.+++|.. ...++++++...+|.+++|+|+||||||||+++|+++ |...++.+ .+ ..+. +.
T Consensus 323 l~~~~l~~~~~~----~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~ 398 (552)
T TIGR03719 323 IEAENLSKGFGD----KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALD 398 (552)
T ss_pred EEEeeEEEEECC----eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccC
Confidence 345565555531 1367778999999999999999999999999999986 32222111 01 1110 00
Q ss_pred CC-------------------chhHHHHHHHhCCcc--CC------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138 116 VG-------------------TRGNQVVRELFGEDI--AL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI 166 (212)
Q Consensus 116 ~~-------------------~~~~~~~~~~~g~~~--~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~ 166 (212)
+. ......++..+|..- .+ +.|+.+|..++..+..+|+ +++++.+.+++..
T Consensus 399 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~ 478 (552)
T TIGR03719 399 PNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478 (552)
T ss_pred CCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 00 001123455555421 11 2356778889989999998 6689999999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 167 LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 167 ~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
...+.+.+.+.. . .+++-+|.+... ..+||++|+++
T Consensus 479 ~~~l~~~l~~~~--~-~viivsHd~~~~--~~~~d~i~~l~ 514 (552)
T TIGR03719 479 LRALEEALLEFA--G-CAVVISHDRWFL--DRIATHILAFE 514 (552)
T ss_pred HHHHHHHHHHCC--C-eEEEEeCCHHHH--HHhCCEEEEEE
Confidence 999999998763 2 577779998764 46899999986
No 360
>PLN03073 ABC transporter F family; Provisional
Probab=98.97 E-value=4.6e-10 Score=105.90 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=54.4
Q ss_pred CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.|+..|..|+..++.+|+ +++++.+.+++.....+.+.+.+. ...+++-+|.+.. +..+||+++.+.
T Consensus 347 gG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~--l~~~~d~i~~l~ 415 (718)
T PLN03073 347 GGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREF--LNTVVTDILHLH 415 (718)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHH--HHHhCCEEEEEE
Confidence 356678889999999998 568999999999999999998875 2467777898765 457899999885
No 361
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.97 E-value=9.1e-10 Score=110.82 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=57.2
Q ss_pred CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
.|+.+|-.|++.+..+|. +++++.+.+++.....+.+.+++.. ....++++-+|.+... ..||++++++-
T Consensus 582 GGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i---~~aD~Iivl~~ 654 (1466)
T PTZ00265 582 GGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI---RYANTIFVLSN 654 (1466)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH---HhCCEEEEEeC
Confidence 467788899999999998 5688999999999999999998875 2356777779988553 58999999864
No 362
>KOG0059|consensus
Probab=98.97 E-value=8.1e-10 Score=106.57 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=101.9
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------cc-cccCCch----------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------HR-AYDVGTR---------- 119 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~~-~~~~~~~---------- 119 (212)
+.+.+++..++++++|+.|+|||||||+++++.|. |...+.+-.+. +. -|-|+..
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 77889999999999999999999999999999986 55666332221 11 1333311
Q ss_pred ------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHH
Q psy17138 120 ------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKE 172 (212)
Q Consensus 120 ------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~ 172 (212)
..+..++.+|..-. -+.|...|-.++-.+..+|. .++++...++|..++.+|+
T Consensus 660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ 739 (885)
T KOG0059|consen 660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWD 739 (885)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHH
Confidence 12233333332111 13456666677777888888 6788999999999999999
Q ss_pred HHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 173 EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 173 ~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.|.+.+++.+.+++.+|.|.|++ .+|||+.++.
T Consensus 740 ii~~~~k~g~aiiLTSHsMeE~E--aLCtR~aImv 772 (885)
T KOG0059|consen 740 IIARLRKNGKAIILTSHSMEEAE--ALCTRTAIMV 772 (885)
T ss_pred HHHHHHhcCCEEEEEcCCHHHHH--HHhhhhheee
Confidence 99998855559999999999985 6999987653
No 363
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.96 E-value=9.4e-10 Score=90.16 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=51.6
Q ss_pred CccchHhHHHHhcCCh--H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 137 GSIDRKKLGAIVFSNK--D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 137 ~~~~r~~l~~~vf~~~--~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
|+.+|-.++..+..+| + +++++.+.+++.....+.+.+.++......+++-+|.+.+. .+||+++++
T Consensus 141 G~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~---~~~d~i~~l 211 (226)
T cd03270 141 GEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTI---RAADHVIDI 211 (226)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHH---HhCCEEEEe
Confidence 4566778888887776 3 55788889999999999988887653345677778988653 489999988
No 364
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.96 E-value=6.5e-10 Score=104.05 Aligned_cols=156 Identities=13% Similarity=0.096 Sum_probs=102.3
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc------------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH------------ 111 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~------------ 111 (212)
+++.+++|.........+++++++..+|++++|+|+||||||||+++|+++ |...++...+..
T Consensus 7 ~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 86 (648)
T PRK10535 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRRE 86 (648)
T ss_pred EeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhc
Confidence 455555553211112356778899999999999999999999999999987 333444322210
Q ss_pred c-cccCC-------chh---------------------HHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138 112 R-AYDVG-------TRG---------------------NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 112 ~-~~~~~-------~~~---------------------~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-- 153 (212)
. .|.++ ... ....++.+|..-. -+.|+.+|-.|+..+..+|+
T Consensus 87 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lL 166 (648)
T PRK10535 87 HFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVI 166 (648)
T ss_pred cEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 0 01110 000 1112223332211 12356677888888889998
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++...+++...+.+.+.++++......+++.+|.+... ..||++++++
T Consensus 167 llDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~---~~~d~i~~l~ 217 (648)
T PRK10535 167 LADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVA---AQAERVIEIR 217 (648)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH---HhCCEEEEEE
Confidence 56888999999999999999987754456778889998754 4699999886
No 365
>PLN03232 ABC transporter C family member; Provisional
Probab=98.95 E-value=3.3e-10 Score=114.40 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=105.2
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..+++++++|+.. .-..++++++..++|+.+||+|++||||||++++|.++ |...+|+.++.
T Consensus 1235 I~f~nVsf~Y~~~--~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1235 IKFEDVHLRYRPG--LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred EEEEEEEEEECCC--CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 4577777877421 12367889999999999999999999999999999987 55555543331
Q ss_pred --------------cccccCCch----hHHHH---------HHHh--CCccC-------CCCCccchHhHHHHhcCChH-
Q psy17138 111 --------------HRAYDVGTR----GNQVV---------RELF--GEDIA-------LPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 111 --------------~~~~~~~~~----~~~~~---------~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~~- 153 (212)
++++.+... ..... +... |.+.. -+.|+.+|-.|++.+.++|+
T Consensus 1313 ~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232 1313 SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 111111110 00111 1111 11100 12367788899999999998
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.++-+++...+.+++.+++.. +++++++-+|-+... ..||++++++
T Consensus 1393 LILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti---~~~DrIlVL~ 1443 (1495)
T PLN03232 1393 LVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTI---IDCDKILVLS 1443 (1495)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHH---HhCCEEEEEE
Confidence 5688888999999999998888764 346667768888442 4599999986
No 366
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.3e-09 Score=86.04 Aligned_cols=127 Identities=17% Similarity=0.095 Sum_probs=82.3
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-CC------eeeeCCcccc---------ccccCCc----------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-GA------GLINCDQLGH---------RAYDVGT---------- 118 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-g~------~vi~~D~i~~---------~~~~~~~---------- 118 (212)
-++++++....|++.+|.||||||||||+..|++. +| ..+++..|.. .++...+
T Consensus 19 ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~ 98 (251)
T COG0396 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTN 98 (251)
T ss_pred hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeH
Confidence 45667888999999999999999999999999986 33 3444433310 0000000
Q ss_pred -------------------h---hHHHHHHHhCCcc--C----C---CCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138 119 -------------------R---GNQVVRELFGEDI--A----L---PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL 165 (212)
Q Consensus 119 -------------------~---~~~~~~~~~g~~~--~----~---~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~ 165 (212)
. ......+..+.+- + + +.|...|..+.|++..+|. .++++.+.++-.
T Consensus 99 ~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDId 178 (251)
T COG0396 99 SDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDID 178 (251)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHH
Confidence 0 0111112222111 0 1 3467778899999999998 678888889888
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEeccc
Q psy17138 166 ILAQVKEEIARLSESHKVIVIEAAVL 191 (212)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~vvie~~~l 191 (212)
..+.+.+.+..++....-+++=+|+-
T Consensus 179 alk~V~~~i~~lr~~~~~~liITHy~ 204 (251)
T COG0396 179 ALKIVAEGINALREEGRGVLIITHYQ 204 (251)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecHH
Confidence 88888888888874444444448873
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.95 E-value=9.1e-10 Score=100.30 Aligned_cols=151 Identities=15% Similarity=0.058 Sum_probs=94.1
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-ccc---cccccCCc
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QLG---HRAYDVGT 118 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i~---~~~~~~~~ 118 (212)
.+++.++.|+ ...-++++++....|..+||+|.||||||||+|+|++. |-...... .++ .+......
T Consensus 5 ~~~~ls~~~g----~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 5 TLENLSLAYG----DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPE 80 (530)
T ss_pred EEeeeEEeeC----CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCC
Confidence 3555566663 12445778889999999999999999999999999974 21111111 111 00000000
Q ss_pred -hh-----------------H----------------------------------HHHHHHhCCccC------CCCCccc
Q psy17138 119 -RG-----------------N----------------------------------QVVRELFGEDIA------LPDGSID 140 (212)
Q Consensus 119 -~~-----------------~----------------------------------~~~~~~~g~~~~------~~~~~~~ 140 (212)
.. + ..+..-+|..-. -+.|...
T Consensus 81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~ 160 (530)
T COG0488 81 KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRR 160 (530)
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHH
Confidence 00 0 011111221111 0234556
Q ss_pred hHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 141 RKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 141 r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
|..|++.+|++|+ ++++++|-++-.....+.+.+.+. .. .+++-+|.=.- +.+.|+.+|-++
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~F--Ld~V~t~I~~ld 224 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYF--LDNVATHILELD 224 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHH--HHHHhhheEEec
Confidence 8899999999999 668999999999999999999864 33 56665886443 235788887765
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.95 E-value=3.8e-09 Score=96.28 Aligned_cols=154 Identities=14% Similarity=0.106 Sum_probs=99.3
Q ss_pred ccccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CC---------eeeeCCcc
Q psy17138 44 QEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GA---------GLINCDQL 109 (212)
Q Consensus 44 ~~~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~---------~vi~~D~i 109 (212)
.....+.+..+.|... .....++++...+|..|||+||||+|||||+|+|.+. |. .+++-+
T Consensus 319 ~~vl~~~~~~~~y~~~---~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~-- 393 (530)
T COG0488 319 KLVLEFENVSKGYDGG---RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQH-- 393 (530)
T ss_pred CeeEEEeccccccCCC---ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEeh--
Confidence 3444566666666322 2345668899999999999999999999999999652 11 112111
Q ss_pred ccccc------------cCC--chhHHHHHHHhCCccC--------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138 110 GHRAY------------DVG--TRGNQVVRELFGEDIA--------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL 165 (212)
Q Consensus 110 ~~~~~------------~~~--~~~~~~~~~~~g~~~~--------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~ 165 (212)
..++. .+. .......+..|+-..- -+.|+..|..|+..+.+.|+ ++++++|-++..
T Consensus 394 ~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~ 473 (530)
T COG0488 394 RDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIE 473 (530)
T ss_pred hhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHH
Confidence 00100 000 1122333344443210 14567788899989999888 668999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 166 ILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
....+.+.+... .+ .|++.+|.-.-. ...|+++|.+.
T Consensus 474 s~~aLe~aL~~f--~G-tvl~VSHDr~Fl--~~va~~i~~~~ 510 (530)
T COG0488 474 SLEALEEALLDF--EG-TVLLVSHDRYFL--DRVATRIWLVE 510 (530)
T ss_pred HHHHHHHHHHhC--CC-eEEEEeCCHHHH--HhhcceEEEEc
Confidence 999998888774 34 444448875532 46889998875
No 369
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.94 E-value=4.6e-11 Score=95.57 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=25.0
Q ss_pred CCCcEEEEEecccc-ccccccccCeEEEEEeCCC
Q psy17138 179 ESHKVIVIEAAVLL-SAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 179 ~~~~~vvie~~~l~-e~~~~~~~d~v~~v~~~~~ 211 (212)
.+.+++++||.+++ ...+++++|..|+|++|.+
T Consensus 105 ~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~ 138 (194)
T PF00485_consen 105 SPSDIVIVEGIYALYDEELRDLFDLKIFLDADED 138 (194)
T ss_dssp ES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HH
T ss_pred CCCCEEEEcccceeeeeeecccceeEEEecccHH
Confidence 45689999998865 4568899999999999864
No 370
>PLN03130 ABC transporter C family member; Provisional
Probab=98.94 E-value=4.3e-10 Score=114.06 Aligned_cols=156 Identities=18% Similarity=0.106 Sum_probs=106.3
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------- 110 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------- 110 (212)
...+++++++|+.. .-..++++++..++|+.+||+|++||||||++++|.++ |...+|+-++.
T Consensus 1237 ~I~f~nVsf~Y~~~--~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1237 SIKFEDVVLRYRPE--LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred cEEEEEEEEEeCCC--CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc
Confidence 35677777877421 11357889999999999999999999999999999987 55566653331
Q ss_pred -----cc----------cccCCch----hHH---------HHHHHh--CCccC-------CCCCccchHhHHHHhcCChH
Q psy17138 111 -----HR----------AYDVGTR----GNQ---------VVRELF--GEDIA-------LPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 111 -----~~----------~~~~~~~----~~~---------~~~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~~ 153 (212)
++ +..++.. ... ..+... |.+.. -+.|+.+|-.|++.+..+|.
T Consensus 1315 IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ 1394 (1622)
T PLN03130 1315 LGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSK 1394 (1622)
T ss_pred cEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 11 1111110 001 111111 11110 13467788899999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.++-+++...+.+++.|++.. .++++++-+|-+.-. ..||++++++
T Consensus 1395 ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI---~~~DrIlVLd 1446 (1622)
T PLN03130 1395 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTI---IDCDRILVLD 1446 (1622)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHH---HhCCEEEEEE
Confidence 5678888899999999998888764 356777779988653 3599999986
No 371
>PRK01184 hypothetical protein; Provisional
Probab=98.94 E-value=2.5e-09 Score=84.59 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=29.7
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCcc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQL 109 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i 109 (212)
+.+|+|+|++||||||+++++..+|+++++++++
T Consensus 1 ~~~i~l~G~~GsGKsT~a~~~~~~g~~~i~~~d~ 34 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSKIAREMGIPVVVMGDV 34 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHcCCcEEEhhHH
Confidence 4589999999999999999888899999997543
No 372
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.93 E-value=4.7e-09 Score=85.89 Aligned_cols=153 Identities=13% Similarity=0.091 Sum_probs=101.6
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCee------e-----eCCc---c-----
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGL------I-----NCDQ---L----- 109 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~v------i-----~~D~---i----- 109 (212)
+.++++++... +.+.+++-+.+.|+-++|+|+||||||||++++++...+- + ..|. +
T Consensus 34 l~~v~v~r~gk----~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG 109 (257)
T COG1119 34 LKNVSVRRNGK----KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG 109 (257)
T ss_pred ecceEEEECCE----eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence 45555555322 5567788899999999999999999999999999742210 0 0111 0
Q ss_pred ---------------ccc-----------ccc-CCc----hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCC
Q psy17138 110 ---------------GHR-----------AYD-VGT----RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSN 151 (212)
Q Consensus 110 ---------------~~~-----------~~~-~~~----~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~ 151 (212)
.++ +|. +.+ .....+.+.+|..-+. +.|+..|..+++.+..+
T Consensus 110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~ 189 (257)
T COG1119 110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKD 189 (257)
T ss_pred ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcC
Confidence 111 121 111 1233455666654321 23666788899999999
Q ss_pred hH--HHHHHHhhhhHHHHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 152 KD--EMNKLNQAIWPLILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
|. .++++.+.++...++.+.+++.+.. .+...+++-+|...|. ...++.+..+.
T Consensus 190 P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi--~~~~th~lll~ 247 (257)
T COG1119 190 PELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEI--PPCFTHRLLLK 247 (257)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhc--ccccceEEEee
Confidence 99 4688899999999999999988776 3456666669988774 46677666554
No 373
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.93 E-value=9.6e-10 Score=94.82 Aligned_cols=70 Identities=13% Similarity=0.056 Sum_probs=57.1
Q ss_pred CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.|+.+|-.|+..+..+|+ +++++.+.+++..+..+.+.+.+.. .....+++.+|.+.++ ..+||+++++.
T Consensus 103 gGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~--~~~~d~i~vl~ 175 (325)
T TIGR01187 103 GGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEA--MTMSDRIAIMR 175 (325)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 356678889999999988 5688999999999999999988775 3356777779998774 57899999875
No 374
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.92 E-value=9.3e-10 Score=87.11 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=67.0
Q ss_pred EEEEecCCCCcHHHHHHHHHHc------CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCC
Q psy17138 78 IIGLTGGIASGKSTIAKYLETL------GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSN 151 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~l------g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~ 151 (212)
+|+|.|++||||||+++.|... .+.+++.|..-+....+ ....|. .+....++...+.+.+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~--------~~~~g~--~d~~~~~d~~~l~~~l--- 67 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTP--------RDEDGN--YDFESILDLDLLNKNL--- 67 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccc--------cccCCC--CCCCccccHHHHHHHH---
Confidence 5899999999999999999854 34566666543321000 001111 0111112332222211
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHh--hc-CCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 152 KDEMNKLNQAIWPLILAQVKEEIAR--LS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 152 ~~~~~~~~~i~~p~~~~~~~~~i~~--~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
..+..-..+..|.+......+... .. .+..++++|+.+++...+++++|..++|++|.+
T Consensus 68 -~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~ 129 (179)
T cd02028 68 -HDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVH 129 (179)
T ss_pred -HHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCcc
Confidence 001111122334433333222211 11 466899999999998788899999999999976
No 375
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.92 E-value=1e-09 Score=91.09 Aligned_cols=126 Identities=20% Similarity=0.257 Sum_probs=81.2
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHcC--------CeeeeCCccccccccCCchhHHHHHHHhCCccCCC---CCcc
Q psy17138 71 HLSPYPYIIGLTGGIASGKSTIAKYLETLG--------AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP---DGSI 139 (212)
Q Consensus 71 ~~~~~~~iigl~G~~GsGKSTl~~~L~~lg--------~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~ 139 (212)
.....+++|||.|+.|+||||+++.|+.+- ...+-+|-. ......++.-| .... ...+
T Consensus 77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGF---------hy~n~~L~~~g--lm~rKGfPeSy 145 (283)
T COG1072 77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGF---------HYPNAVLDERG--LMARKGFPESY 145 (283)
T ss_pred CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecccc---------ccCHhHhhhcc--ccccCCCCccc
Confidence 347789999999999999999999998651 122223211 00111222111 1111 1256
Q ss_pred chHhHHHHhcCChHHHH-HHHhhhhHHHHHHHHHHHHhhc---CCCcEEEEEeccccccc-----cccccCeEEEEEeCC
Q psy17138 140 DRKKLGAIVFSNKDEMN-KLNQAIWPLILAQVKEEIARLS---ESHKVIVIEAAVLLSAK-----WQDQVHEIWVTFIPE 210 (212)
Q Consensus 140 ~r~~l~~~vf~~~~~~~-~~~~i~~p~~~~~~~~~i~~~~---~~~~~vvie~~~l~e~~-----~~~~~d~v~~v~~~~ 210 (212)
|...+.+++ ..++ ...++..|.+.+.+.+.+.... ...+++++||.+++..+ +.++||..++||+|+
T Consensus 146 D~~~ll~fl----~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~ 221 (283)
T COG1072 146 DVAALLRFL----SDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADE 221 (283)
T ss_pred cHHHHHHHH----HHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCH
Confidence 666555444 2222 2345778999999988885544 56789999999999643 466999999999986
Q ss_pred C
Q psy17138 211 Q 211 (212)
Q Consensus 211 ~ 211 (212)
+
T Consensus 222 ~ 222 (283)
T COG1072 222 E 222 (283)
T ss_pred H
Confidence 4
No 376
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.91 E-value=4.7e-10 Score=113.49 Aligned_cols=156 Identities=15% Similarity=0.039 Sum_probs=105.3
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------- 110 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------- 110 (212)
.....+++++|+... -..++++++..++|+.+||+|++|||||||++.|.++ |...+|+-++.
T Consensus 1284 ~I~f~nVsf~Y~~~~--~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~ 1361 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDL--DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361 (1522)
T ss_pred cEEEEEEEEEeCCCC--cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhc
Confidence 356677777775321 1467889999999999999999999999999999986 55555543321
Q ss_pred ---------------cccccCCc----hhHHHHHH---------Hh--CCccC-------CCCCccchHhHHHHhcCChH
Q psy17138 111 ---------------HRAYDVGT----RGNQVVRE---------LF--GEDIA-------LPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 111 ---------------~~~~~~~~----~~~~~~~~---------~~--g~~~~-------~~~~~~~r~~l~~~vf~~~~ 153 (212)
+++..+.. ......++ .+ |.+.. -+.|+.+|-.|++.+..+|.
T Consensus 1362 i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1441 (1522)
T TIGR00957 1362 ITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTK 1441 (1522)
T ss_pred CeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 11112111 00111111 11 11100 02367788899999999988
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.++-+++.....+.+.|++.. .++++++-+|-+... ..||++++++
T Consensus 1442 ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti---~~~DrIlVld 1493 (1522)
T TIGR00957 1442 ILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTI---MDYTRVIVLD 1493 (1522)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHH---HhCCEEEEEE
Confidence 5688888999999999998887764 345666668887542 4689999986
No 377
>PTZ00243 ABC transporter; Provisional
Probab=98.91 E-value=7.1e-10 Score=112.25 Aligned_cols=155 Identities=19% Similarity=0.152 Sum_probs=103.3
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..+++++++|+.. .-..++++++...+|+.|||+|++|||||||++.|.++ |...+|+-++.
T Consensus 1309 I~f~nVsf~Y~~~--~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1309 LVFEGVQMRYREG--LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred EEEEEEEEEeCCC--CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 4566777777421 11357889999999999999999999999999999987 55556543331
Q ss_pred ----c----------ccccCCc----hhHHHHHHHhCC-----------ccC-------CCCCccchHhHHHHhcCC-hH
Q psy17138 111 ----H----------RAYDVGT----RGNQVVRELFGE-----------DIA-------LPDGSIDRKKLGAIVFSN-KD 153 (212)
Q Consensus 111 ----~----------~~~~~~~----~~~~~~~~~~g~-----------~~~-------~~~~~~~r~~l~~~vf~~-~~ 153 (212)
+ ++..+.. ......++..|. +.. -+.|+.+|-.|++.+.++ +.
T Consensus 1387 ~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243 1387 SMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred eEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence 1 1111110 011111111111 100 134677888999999985 55
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.++-+++...+.+++.+++... .+++++-+|-+.- -..||++++++
T Consensus 1467 ILlLDEATSaLD~~te~~Iq~~L~~~~~-~~TvI~IAHRl~t---i~~~DrIlVLd 1518 (1560)
T PTZ00243 1467 FILMDEATANIDPALDRQIQATVMSAFS-AYTVITIAHRLHT---VAQYDKIIVMD 1518 (1560)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHCC-CCEEEEEeccHHH---HHhCCEEEEEE
Confidence 56788888999999999988887643 4566666888743 25699999986
No 378
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.91 E-value=1.8e-09 Score=101.32 Aligned_cols=153 Identities=12% Similarity=0.053 Sum_probs=100.0
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC-Ccc---ccc-----
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC-DQL---GHR----- 112 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~-D~i---~~~----- 112 (212)
..+.+.++++.. +. ..++++++..++|++++|+|+||||||||+++|+++ |...++. ..+ .++
T Consensus 452 i~~~nv~~~~~~-~~--~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~ 528 (659)
T TIGR00954 452 IKFENIPLVTPN-GD--VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL 528 (659)
T ss_pred EEEEeeEEECCC-CC--eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCC
Confidence 445565555531 11 356778999999999999999999999999999987 3211110 000 011
Q ss_pred ------ccc---------CC--chhHHHHHHHhCCcc----------------CCCCCccchHhHHHHhcCChH--HHHH
Q psy17138 113 ------AYD---------VG--TRGNQVVRELFGEDI----------------ALPDGSIDRKKLGAIVFSNKD--EMNK 157 (212)
Q Consensus 113 ------~~~---------~~--~~~~~~~~~~~g~~~----------------~~~~~~~~r~~l~~~vf~~~~--~~~~ 157 (212)
+.. ++ .......++.+|... .-+.|+.+|-.+++.+.++|+ ++++
T Consensus 529 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDE 608 (659)
T TIGR00954 529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE 608 (659)
T ss_pred cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 111 00 111122333333211 113467788899999999998 5688
Q ss_pred HHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 158 LNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 158 ~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
+.+.+++...+.+.+.+++. ...+++-+|.+... .+||++++++-
T Consensus 609 pts~LD~~~~~~l~~~l~~~---~~tvI~isH~~~~~---~~~d~il~l~~ 653 (659)
T TIGR00954 609 CTSAVSVDVEGYMYRLCREF---GITLFSVSHRKSLW---KYHEYLLYMDG 653 (659)
T ss_pred CccCCCHHHHHHHHHHHHHc---CCEEEEEeCchHHH---HhCCEEEEEeC
Confidence 99999999999888877652 45677778987653 67999998863
No 379
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.90 E-value=8.7e-10 Score=110.98 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=56.3
Q ss_pred CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 135 PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 135 ~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
+.|+.+|-.|++.+..+|. ++++.++.+++...+.+.+.+.+.. ...+++++-+|-+.. -..||++++++-
T Consensus 1360 SGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst---i~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1360 SGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS---IKRSDKIVVFNN 1433 (1466)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH---HHhCCEEEEEeC
Confidence 3467889999999999998 5688889999999999988887764 235677777888844 257999999863
No 380
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.90 E-value=6.5e-09 Score=79.98 Aligned_cols=98 Identities=20% Similarity=0.237 Sum_probs=68.9
Q ss_pred EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHH
Q psy17138 78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMN 156 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~ 156 (212)
+|.|.|++||||||+++.|+ .+|.+++++ +..+.++++..|.++.. ++ .+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsa-----------G~iFR~~A~e~gmsl~e----f~-----~~--------- 52 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSA-----------GTIFREMARERGMSLEE----FS-----RY--------- 52 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeec-----------cHHHHHHHHHcCCCHHH----HH-----HH---------
Confidence 68999999999999999998 478888775 34566777777755411 11 11
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccc--cccCeEEEEEeCCC
Q psy17138 157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQ--DQVHEIWVTFIPEQ 211 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~--~~~d~v~~v~~~~~ 211 (212)
+=-+|.++.++..+..+... ..-+++|+++ ++|- ...|..+++.+|.+
T Consensus 53 ---AE~~p~iD~~iD~rq~e~a~-~~nvVlegrL---A~Wi~k~~adlkI~L~Apl~ 102 (179)
T COG1102 53 ---AEEDPEIDKEIDRRQKELAK-EGNVVLEGRL---AGWIVREYADLKIWLKAPLE 102 (179)
T ss_pred ---HhcCchhhHHHHHHHHHHHH-cCCeEEhhhh---HHHHhccccceEEEEeCcHH
Confidence 12346666777666655543 5678899998 5553 36899999999864
No 381
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.9e-09 Score=81.81 Aligned_cols=129 Identities=15% Similarity=0.098 Sum_probs=84.4
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------------cccc------------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------------GHRA------------ 113 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------------~~~~------------ 113 (212)
-..+.++....|+.+-|+||||||||||+|+|+++ |-..++...+ +|..
T Consensus 17 lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL 96 (209)
T COG4133 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENL 96 (209)
T ss_pred eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHH
Confidence 34557788999999999999999999999999997 3334443322 1111
Q ss_pred ------ccC-CchhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhh
Q psy17138 114 ------YDV-GTRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARL 177 (212)
Q Consensus 114 ------~~~-~~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~ 177 (212)
+.. +.....+.+..+|...+. +.|+..|..|++....... +++++..-+++.-...+...+...
T Consensus 97 ~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H 176 (209)
T COG4133 97 HFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH 176 (209)
T ss_pred HHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHH
Confidence 000 011122333444432221 2355567788876666554 567788888888888888888776
Q ss_pred cCCCcEEEEEeccccc
Q psy17138 178 SESHKVIVIEAAVLLS 193 (212)
Q Consensus 178 ~~~~~~vvie~~~l~e 193 (212)
.....+|++.+|.-+-
T Consensus 177 ~~~GGiVllttHq~l~ 192 (209)
T COG4133 177 AAQGGIVLLTTHQPLP 192 (209)
T ss_pred hcCCCEEEEecCCccC
Confidence 6566799999997653
No 382
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.88 E-value=5e-09 Score=97.60 Aligned_cols=143 Identities=14% Similarity=0.143 Sum_probs=99.3
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC--------eeeeCCcccc------ccccCCc-----------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA--------GLINCDQLGH------RAYDVGT----------- 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~--------~vi~~D~i~~------~~~~~~~----------- 118 (212)
..+++++...++|++++|+||||||||||+++|+++-. ..+++..+.. -.|.++.
T Consensus 39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e 118 (617)
T TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVRE 118 (617)
T ss_pred ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHH
Confidence 46788899999999999999999999999999997521 2233322110 0010000
Q ss_pred --------------------hhHHHHHHHhCCcc-----C--------CCCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138 119 --------------------RGNQVVRELFGEDI-----A--------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIW 163 (212)
Q Consensus 119 --------------------~~~~~~~~~~g~~~-----~--------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~ 163 (212)
...+.+++.+|..- . -+.|+.+|-.++..+..+|+ +++++.+.++
T Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD 198 (617)
T TIGR00955 119 HLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198 (617)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchh
Confidence 01233444444311 0 13467778899999999998 5688999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 164 PLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 164 p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.....+.+.+++.......+++.+|.... ...++||+++++.
T Consensus 199 ~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~-~i~~~~D~i~ll~ 241 (617)
T TIGR00955 199 SFMAYSVVQVLKGLAQKGKTIICTIHQPSS-ELFELFDKIILMA 241 (617)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCCCH-HHHHHhceEEEee
Confidence 999999999988876446788888998752 1356899998875
No 383
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.88 E-value=1.8e-09 Score=98.51 Aligned_cols=122 Identities=14% Similarity=0.132 Sum_probs=70.1
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc--CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcC
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL--GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFS 150 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l--g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~ 150 (212)
..+..+|||.|||||||||+++.|.++ ...++..|... .. .. ..+. .++....++...+. +
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~-----~~----~~---~i~~-nfD~P~a~D~d~L~----e 124 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN-----DS----SR---IIDG-NFDDPRLTDYDTLL----D 124 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee-----cc----hh---hhCc-cCCChhhcchhHHH----H
Confidence 445789999999999999999999975 24456655421 10 00 0010 01100111111111 1
Q ss_pred ChHHHHHHHhhhhHHHHHHHHHHHHh--hc-CCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 151 NKDEMNKLNQAIWPLILAQVKEEIAR--LS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 151 ~~~~~~~~~~i~~p~~~~~~~~~i~~--~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
+-..+..-..+..|.+......+... .. ....++++||.+++...+++++|..|||++|.+
T Consensus 125 nL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr~LlDlkIFVDtdvD 188 (656)
T PLN02318 125 NIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVH 188 (656)
T ss_pred HHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccHhHHhhCCEEEEEcCCcc
Confidence 11111111223456555554433321 11 467899999999998889999999999998754
No 384
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.88 E-value=4.6e-09 Score=81.27 Aligned_cols=149 Identities=16% Similarity=0.153 Sum_probs=91.4
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeee-----eCCcc---------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLI-----NCDQL--------- 109 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi-----~~D~i--------- 109 (212)
+.+.++.|+.. .++-++.+..+.|..+.+.||||+|||||+|.|+-| |.-.+ |....
T Consensus 5 v~~in~~yg~~----q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 5 LNGINCFYGAH----QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred Ecccccccccc----hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 44455555432 345567788899999999999999999999999855 22111 11100
Q ss_pred cccc------c--cCCchh----------------------HHHHHH---------HhCCccCCCCCccchHhHHHHhcC
Q psy17138 110 GHRA------Y--DVGTRG----------------------NQVVRE---------LFGEDIALPDGSIDRKKLGAIVFS 150 (212)
Q Consensus 110 ~~~~------~--~~~~~~----------------------~~~~~~---------~~g~~~~~~~~~~~r~~l~~~vf~ 150 (212)
.++. | .|.-.. -.++.+ .|... -+.|+.+|..+++.+.-
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plh--lsggqqqrvaiaralmm 158 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLH--LSGGQQQRVAIARALMM 158 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCcee--cccchhhhHHHHHHHhc
Confidence 0000 0 111000 001111 11111 14577789999998888
Q ss_pred ChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEE
Q psy17138 151 NKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
.|+ +++++++.++|++...+-+.|+++. .+..-|++ +|-.--+ ++.+.+|+++
T Consensus 159 kpqvllfdeptaaldpeitaqvv~iikel~~tgitqviv-thev~va--~k~as~vvym 214 (242)
T COG4161 159 EPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIV-THEVEVA--RKTASRVVYM 214 (242)
T ss_pred CCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEE-EeehhHH--HhhhhheEee
Confidence 887 6688999999999999999999987 44434444 5654433 3456666665
No 385
>KOG0056|consensus
Probab=98.88 E-value=6.8e-09 Score=92.31 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=96.5
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
...|++.+.+. .....+.++++....|..++++||||+||||++|+|-++ |...+|+.+|.
T Consensus 538 i~fsnvtF~Y~---p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 538 IEFSNVTFAYD---PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred EEEEEeEEecC---CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 34555555543 233456789999999999999999999999999999875 66666665541
Q ss_pred ----ccc------------c-cCCc---hhHH----------------HHHHHhCCccC-CCCCccchHhHHHHhcCChH
Q psy17138 111 ----HRA------------Y-DVGT---RGNQ----------------VVRELFGEDIA-LPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 111 ----~~~------------~-~~~~---~~~~----------------~~~~~~g~~~~-~~~~~~~r~~l~~~vf~~~~ 153 (212)
++. | .++. +.++ +.....|+..+ -++|..+|..+++.+..+|.
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 000 1 1110 0111 11112222222 25678899999999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.++.++....+.++.-+.+.-++...+++ +|-|.-- -.+|.+.+++
T Consensus 695 iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVv-AHRLSTi---vnAD~ILvi~ 746 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAIQAALARLCANRTTIVV-AHRLSTI---VNADLILVIS 746 (790)
T ss_pred EEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEE-eeeehhe---ecccEEEEEe
Confidence 667777777777777776666655445545555 6765431 2456666653
No 386
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.87 E-value=2.2e-10 Score=90.15 Aligned_cols=38 Identities=29% Similarity=0.335 Sum_probs=35.6
Q ss_pred ccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 62 LRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 62 ~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...+++.+++..+++..++++|.||||||||+|+|+++
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm 62 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc
Confidence 44788899999999999999999999999999999997
No 387
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.86 E-value=6.7e-09 Score=86.57 Aligned_cols=136 Identities=18% Similarity=0.172 Sum_probs=90.4
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------------------------ccc----c
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------------------------GHR----A 113 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------------------------~~~----~ 113 (212)
..+..+..-+.+|-|+|||||||+++++++| |...++...+ .|- +
T Consensus 17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgN 96 (352)
T COG4148 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGN 96 (352)
T ss_pred EeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecc
Confidence 3455666789999999999999999999997 3333332211 110 0
Q ss_pred --c---cCCchhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChHH--HHHHHhhhhHHHHHHHHHHHHhhc-
Q psy17138 114 --Y---DVGTRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKDE--MNKLNQAIWPLILAQVKEEIARLS- 178 (212)
Q Consensus 114 --~---~~~~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~~--~~~~~~i~~p~~~~~~~~~i~~~~- 178 (212)
| ......++.++...|..-+ -+.|..+|..++..+..+|++ ++++-+-++-.-.+++...++.+.
T Consensus 97 L~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~ 176 (352)
T COG4148 97 LRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD 176 (352)
T ss_pred hhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHH
Confidence 1 0001235666666665422 256788999999999999984 466666666666667766666665
Q ss_pred -CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 179 -ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 179 -~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
-+..++.+ +|-+.|. ..++|+++++.
T Consensus 177 e~~IPIlYV-SHS~~Ev--~RLAd~vV~le 203 (352)
T COG4148 177 EINIPILYV-SHSLDEV--LRLADRVVVLE 203 (352)
T ss_pred hcCCCEEEE-ecCHHHH--HhhhheEEEec
Confidence 23455555 7887764 57999999875
No 388
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.85 E-value=4.4e-09 Score=105.68 Aligned_cols=143 Identities=12% Similarity=0.088 Sum_probs=98.2
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC--------CeeeeCCccc----cc-cccCCc-------h----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG--------AGLINCDQLG----HR-AYDVGT-------R---- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg--------~~vi~~D~i~----~~-~~~~~~-------~---- 119 (212)
..++++++....|.+++|+|+||||||||+++|+++- ...+++..+. +. .|.++. .
T Consensus 777 ~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~ 856 (1394)
T TIGR00956 777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRES 856 (1394)
T ss_pred EeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHH
Confidence 4678889999999999999999999999999999762 2233332111 00 011110 0
Q ss_pred --------------------hHHHHHHHhCCccC-----------CCCCccchHhHHHHhcCChH---HHHHHHhhhhHH
Q psy17138 120 --------------------GNQVVRELFGEDIA-----------LPDGSIDRKKLGAIVFSNKD---EMNKLNQAIWPL 165 (212)
Q Consensus 120 --------------------~~~~~~~~~g~~~~-----------~~~~~~~r~~l~~~vf~~~~---~~~~~~~i~~p~ 165 (212)
..+++++.+|..-. -+.|+.+|-.++..+..+|+ +++++.+.+++.
T Consensus 857 L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~ 936 (1394)
T TIGR00956 857 LRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQ 936 (1394)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHH
Confidence 11233344443211 13456778889988889995 679999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 166 ILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
....+.+.++++......+++.+|.+... +.+.||+++++.
T Consensus 937 ~~~~i~~~L~~la~~g~tvI~t~H~~~~~-~~~~~D~vl~L~ 977 (1394)
T TIGR00956 937 TAWSICKLMRKLADHGQAILCTIHQPSAI-LFEEFDRLLLLQ 977 (1394)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCCHH-HHHhcCEEEEEc
Confidence 99999999988764457888889987542 235689998875
No 389
>PRK08233 hypothetical protein; Provisional
Probab=98.83 E-value=1.3e-08 Score=79.89 Aligned_cols=104 Identities=13% Similarity=0.225 Sum_probs=56.3
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cC-CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LG-AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg-~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~ 153 (212)
+.+|+|+|++||||||+++.|+. ++ ..++..|...... .. ........ .+. .+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~---~~---~~~~~~~~------~~~---------~~---- 57 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDN---CP---EDICKWID------KGA---------NY---- 57 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEccc---Cc---hhhhhhhh------ccC---------Ch----
Confidence 68999999999999999999985 43 3344333221110 00 00000000 000 00
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccc-cccccccCeEEEEEeCCC
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~ 211 (212)
.......+.+.+...... .+..++++|+++... ..+...+|.++++++|.+
T Consensus 58 -----~~~~~~~~~~~l~~~~~~--~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~ 109 (182)
T PRK08233 58 -----SEWVLTPLIKDIQELIAK--SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLD 109 (182)
T ss_pred -----hhhhhHHHHHHHHHHHcC--CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHH
Confidence 011112222222222211 223688899987653 456778999999999976
No 390
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.83 E-value=6.4e-09 Score=90.56 Aligned_cols=158 Identities=18% Similarity=0.138 Sum_probs=110.7
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----------CeeeeCCcc-------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----------AGLINCDQL------- 109 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----------~~vi~~D~i------- 109 (212)
..+.+.+..|...+....++++++++..+|+.++|+|.||||||-.+..+.+|- -..+++..+
T Consensus 7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~ 86 (534)
T COG4172 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ 86 (534)
T ss_pred eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence 457888888988888889999999999999999999999999999999998861 223333222
Q ss_pred ---------ccccccCCc-------------------------hh---HHHHHHHhCCcc----------CCCCCccchH
Q psy17138 110 ---------GHRAYDVGT-------------------------RG---NQVVRELFGEDI----------ALPDGSIDRK 142 (212)
Q Consensus 110 ---------~~~~~~~~~-------------------------~~---~~~~~~~~g~~~----------~~~~~~~~r~ 142 (212)
+.-+-+|-. .. .-++.+..|.+- .-+.|+.+|.
T Consensus 87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRV 166 (534)
T COG4172 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRV 166 (534)
T ss_pred HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHH
Confidence 111100000 00 112222223221 1146788999
Q ss_pred hHHHHhcCChHHH--HHHHhhhhHHHHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 143 KLGAIVFSNKDEM--NKLNQAIWPLILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 143 ~l~~~vf~~~~~~--~~~~~i~~p~~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.++..+..+|+++ ++++..++-.+...+.+.+++++ .+-.++|| +|.|-- .++++|+|.++.
T Consensus 167 MIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfI-THDL~i--Vr~~ADrV~VM~ 232 (534)
T COG4172 167 MIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFI-THDLGI--VRKFADRVYVMQ 232 (534)
T ss_pred HHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEE-eccHHH--HHHhhhhEEEEe
Confidence 9998899999855 67888899999999999998887 44567777 888753 357889998764
No 391
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.82 E-value=1e-08 Score=79.68 Aligned_cols=31 Identities=42% Similarity=0.587 Sum_probs=27.8
Q ss_pred EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCc
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQ 108 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~ 108 (212)
+|+|+|++||||||+++.|++ +|+++++.|.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~ 33 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGD 33 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHH
Confidence 799999999999999999975 7999988764
No 392
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.82 E-value=2.4e-09 Score=108.21 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=104.2
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccc------------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLG------------ 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~------------ 110 (212)
..++++.++|+.. .-..++++++..++|+.+||+|++|||||||+++|.++ |...+|+-.+.
T Consensus 1218 I~f~nVs~~Y~~~--~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1218 MDVQGLTAKYTEA--GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred EEEEEEEEEeCCC--CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceE
Confidence 4567777777532 12467889999999999999999999999999999987 44555543321
Q ss_pred -------------cccccCCc----hhHHHHHHH---------h--CCccC-------CCCCccchHhHHHHhcCChH--
Q psy17138 111 -------------HRAYDVGT----RGNQVVREL---------F--GEDIA-------LPDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 111 -------------~~~~~~~~----~~~~~~~~~---------~--g~~~~-------~~~~~~~r~~l~~~vf~~~~-- 153 (212)
++++.+.. ......++. . |.+.. -+.|+.+|-.|++.+..++.
T Consensus 1296 ~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~IL 1375 (1490)
T TIGR01271 1296 VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKIL 1375 (1490)
T ss_pred EEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEE
Confidence 11111111 000111111 1 11100 03467778889999999988
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.++-+++.....+.+.|++... .+++++-+|-+.-. ..||++++++
T Consensus 1376 lLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~ti---~~~DrIlvL~ 1425 (1490)
T TIGR01271 1376 LLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVEAL---LECQQFLVIE 1425 (1490)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHH---HhCCEEEEEE
Confidence 56888889999999999999987643 46777778887432 4699999986
No 393
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.79 E-value=2.9e-08 Score=77.50 Aligned_cols=156 Identities=14% Similarity=0.080 Sum_probs=93.2
Q ss_pred echhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeee------eCCccc--------
Q psy17138 50 SSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLI------NCDQLG-------- 110 (212)
Q Consensus 50 ss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi------~~D~i~-------- 110 (212)
.+..+.-......+..++++++...+|+.++|+||||||||||+-.|++| |-..+ ..|+-+
T Consensus 10 ~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~ 89 (228)
T COG4181 10 HHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARH 89 (228)
T ss_pred hhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccc
Confidence 33344444444466777888999999999999999999999999999987 11111 111100
Q ss_pred ----------------cccc-----cCC---chh---HHHHHHHhCCc--c-----CCCCCccchHhHHHHhcCChHHH-
Q psy17138 111 ----------------HRAY-----DVG---TRG---NQVVRELFGED--I-----ALPDGSIDRKKLGAIVFSNKDEM- 155 (212)
Q Consensus 111 ----------------~~~~-----~~~---~~~---~~~~~~~~g~~--~-----~~~~~~~~r~~l~~~vf~~~~~~- 155 (212)
-++. ..+ ... -..+....|.. . .-+.|..+|..|++.+...|+.+
T Consensus 90 vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLf 169 (228)
T COG4181 90 VGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLF 169 (228)
T ss_pred eeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEe
Confidence 0000 000 011 12222333321 1 11456778999998887778743
Q ss_pred -HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 156 -NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 156 -~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
++++.-++...-+.+.+.+-+.+ +...+.++.+|...-+ ..|+|.+.+..
T Consensus 170 ADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA---~Rc~R~~r~~~ 221 (228)
T COG4181 170 ADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA---ARCDRQLRLRS 221 (228)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH---Hhhhheeeeec
Confidence 45555566666666666664444 3445666668886543 57999887653
No 394
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.78 E-value=1.7e-08 Score=81.04 Aligned_cols=135 Identities=10% Similarity=0.103 Sum_probs=82.9
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-------------eee-eCCcc------ccccccCC----------c
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-------------GLI-NCDQL------GHRAYDVG----------T 118 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-------------~vi-~~D~i------~~~~~~~~----------~ 118 (212)
+++....| +++|+||||||||||+++|.++.. .++ ..... .+-.|.++ .
T Consensus 16 ~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~ 94 (197)
T cd03278 16 TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQ 94 (197)
T ss_pred eeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEeh
Confidence 44556668 999999999999999999986510 011 11000 00001111 0
Q ss_pred hhHHHHHHHhCCccCC------CCCccchHhHHHHhc----CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEE
Q psy17138 119 RGNQVVRELFGEDIAL------PDGSIDRKKLGAIVF----SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVI 186 (212)
Q Consensus 119 ~~~~~~~~~~g~~~~~------~~~~~~r~~l~~~vf----~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvi 186 (212)
.....+++. . ...+ +.|+.+|..++..+. ++|. +++++.+.++|.....+.+.++++..+ ..+++
T Consensus 95 ~~~~~~l~~-~-~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~tiIi 171 (197)
T cd03278 95 GDVSEIIEA-P-GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKE-TQFIV 171 (197)
T ss_pred hhHHHHHhC-C-CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccC-CEEEE
Confidence 112223332 1 1111 234556667776543 4444 568888999999999999999887543 45666
Q ss_pred EeccccccccccccCeEEEEEeCC
Q psy17138 187 EAAVLLSAKWQDQVHEIWVTFIPE 210 (212)
Q Consensus 187 e~~~l~e~~~~~~~d~v~~v~~~~ 210 (212)
-+|.+... +.||+++.+...+
T Consensus 172 itH~~~~~---~~~d~v~~~~~~~ 192 (197)
T cd03278 172 ITHRKGTM---EAADRLYGVTMQE 192 (197)
T ss_pred EECCHHHH---hhcceEEEEEecc
Confidence 69988653 4799999988765
No 395
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.77 E-value=1.4e-08 Score=102.19 Aligned_cols=143 Identities=10% Similarity=0.059 Sum_probs=98.4
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC---------CeeeeCCccc------c--ccccCC---------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG---------AGLINCDQLG------H--RAYDVG--------- 117 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg---------~~vi~~D~i~------~--~~~~~~--------- 117 (212)
..+++++....+|++++|+||||||||||+|+|+++. ...+++..+. + -.|.++
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence 4567788999999999999999999999999999751 1223221110 0 001000
Q ss_pred ----------------------chh-----HHHHHHHhCCccC------------CCCCccchHhHHHHhcCChH--HHH
Q psy17138 118 ----------------------TRG-----NQVVRELFGEDIA------------LPDGSIDRKKLGAIVFSNKD--EMN 156 (212)
Q Consensus 118 ----------------------~~~-----~~~~~~~~g~~~~------------~~~~~~~r~~l~~~vf~~~~--~~~ 156 (212)
... .+.+++.+|.... -+.|+.+|..++..+..+|. +++
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD 234 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD 234 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence 000 1223444554321 14578889999999999998 568
Q ss_pred HHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 157 KLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++.+.+++.....+.+.++++. .....+++..|...+. ..++||+++++.
T Consensus 235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~-i~~l~D~v~~L~ 285 (1394)
T TIGR00956 235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQD-AYELFDKVIVLY 285 (1394)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHH-HHHhhceEEEEe
Confidence 8999999999999999998876 3356788878876432 357899999875
No 396
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.77 E-value=2.3e-08 Score=80.56 Aligned_cols=142 Identities=14% Similarity=0.112 Sum_probs=90.9
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccccc-----------ccCCc---------
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRA-----------YDVGT--------- 118 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~-----------~~~~~--------- 118 (212)
++++.+++....+.++.|+|.|||||||+++.+++- |...++..++.+.. ++...
T Consensus 20 ~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTi 99 (263)
T COG1101 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTI 99 (263)
T ss_pred HHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccH
Confidence 566778999999999999999999999999999973 66666655442211 00000
Q ss_pred -------------------------hhHHHHHHHhCCccC---------CCCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138 119 -------------------------RGNQVVRELFGEDIA---------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAI 162 (212)
Q Consensus 119 -------------------------~~~~~~~~~~g~~~~---------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~ 162 (212)
..+...+...|.... -+.|+.+--.|....++.|. ++++-++.+
T Consensus 100 eENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAAL 179 (263)
T COG1101 100 EENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAAL 179 (263)
T ss_pred HHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcC
Confidence 011222222222111 12344444455556677777 567888899
Q ss_pred hHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 163 WPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 163 ~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+|.....+.+.-++.- ...-..+.-+|.|.+| .++-+|.+++.
T Consensus 180 DPkta~~vm~lT~kiV~~~klTtlMVTHnm~~A--l~yG~RlImLh 223 (263)
T COG1101 180 DPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDA--LDYGNRLIMLH 223 (263)
T ss_pred CcchHHHHHHHHHHHHHhcCCceEEEeccHHHH--HhhCCeEEEEe
Confidence 9998888876665554 3344566668998776 46777877654
No 397
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.75 E-value=1.2e-08 Score=103.15 Aligned_cols=139 Identities=15% Similarity=0.138 Sum_probs=92.3
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc------------cccccccCC----chhHHH
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ------------LGHRAYDVG----TRGNQV 123 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~------------i~~~~~~~~----~~~~~~ 123 (212)
.++++++..++|.+++|+||+|||||||++.|.++ |...+++.. ..+++...+ ...+..
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~ 520 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTS 520 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHH
Confidence 46778899999999999999999999999999986 332232210 011111000 111222
Q ss_pred HHHH---------h--CCc------c-CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHH-HHhhcCCCc
Q psy17138 124 VREL---------F--GED------I-ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEE-IARLSESHK 182 (212)
Q Consensus 124 ~~~~---------~--g~~------~-~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~-i~~~~~~~~ 182 (212)
.++. + |.. . .-+.|+.+|-.|++.+.++|+ +++.+.+.+++...+.+.+. +.... ..+
T Consensus 521 ~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~ 599 (1490)
T TIGR01271 521 VIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNK 599 (1490)
T ss_pred HHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCC
Confidence 2221 1 110 0 013467789999999999998 66888899999999999875 44442 356
Q ss_pred EEEEEeccccccccccccCeEEEEE
Q psy17138 183 VIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 183 ~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+++-+|.+... ..||++++++
T Consensus 600 tvilvtH~~~~~---~~ad~ii~l~ 621 (1490)
T TIGR01271 600 TRILVTSKLEHL---KKADKILLLH 621 (1490)
T ss_pred eEEEEeCChHHH---HhCCEEEEEE
Confidence 777779998654 4699999885
No 398
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.73 E-value=1.4e-08 Score=102.86 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=99.7
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC--ccccc-------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD--QLGHR------- 112 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D--~i~~~------- 112 (212)
..+++.++.+.. .....++++++..++|.+++|+|+||||||||+++|.++ |...++.. -+.++
T Consensus 637 i~~~~~~~~~~~--~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~T 714 (1522)
T TIGR00957 637 ITVHNATFTWAR--DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDS 714 (1522)
T ss_pred EEEEEeEEEcCC--CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCc
Confidence 445555555531 112356788999999999999999999999999999986 32222210 00111
Q ss_pred ---cccC----CchhHHHHHHH---------h--CCc------c-CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138 113 ---AYDV----GTRGNQVVREL---------F--GED------I-ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL 165 (212)
Q Consensus 113 ---~~~~----~~~~~~~~~~~---------~--g~~------~-~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~ 165 (212)
+... ....+....+. + |.+ . .-+.|+.+|-.|++.+.++|+ +++++.+.+++.
T Consensus 715 i~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~ 794 (1522)
T TIGR00957 715 LRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 794 (1522)
T ss_pred HHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 1110 11122222221 1 110 0 013467889999999999998 668889999999
Q ss_pred HHHHHHHHHHhhc--CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 166 ILAQVKEEIARLS--ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 166 ~~~~~~~~i~~~~--~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+.+.+.+.... ...+.+++-+|.+... ..||++++++
T Consensus 795 ~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l---~~~D~ii~l~ 835 (1522)
T TIGR00957 795 VGKHIFEHVIGPEGVLKNKTRILVTHGISYL---PQVDVIIVMS 835 (1522)
T ss_pred HHHHHHHHHhhhhhhhcCCEEEEEeCChhhh---hhCCEEEEec
Confidence 9999988875421 2346777779987553 4599998875
No 399
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.71 E-value=4.2e-08 Score=80.86 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=51.3
Q ss_pred CccchHhHHHHhc----CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCC
Q psy17138 137 GSIDRKKLGAIVF----SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPE 210 (212)
Q Consensus 137 ~~~~r~~l~~~vf----~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~ 210 (212)
|+.+|..++..+. ++|. +++++.+.++|...+.+.+.+.++.. ..++++.+|.. + ...+||+++++..+.
T Consensus 162 G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~-~--~~~~~d~i~~l~~~~ 237 (243)
T cd03272 162 GQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP-E--LLEVADKFYGVKFRN 237 (243)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-H--HHhhCCEEEEEEEEC
Confidence 4556667776553 3454 56888899999999999999888744 45777777763 3 347999999998764
No 400
>PRK04182 cytidylate kinase; Provisional
Probab=98.70 E-value=3.5e-08 Score=77.20 Aligned_cols=32 Identities=34% Similarity=0.572 Sum_probs=28.1
Q ss_pred eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQ 108 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~ 108 (212)
++|+|+|++||||||+++.|+ .+|++++++|.
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~ 33 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGE 33 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHH
Confidence 379999999999999999998 58999888654
No 401
>PLN03232 ABC transporter C family member; Provisional
Probab=98.70 E-value=2.1e-08 Score=101.62 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=97.0
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc---c--------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL---G-------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i---~-------- 110 (212)
..+++.++.+... .....++++++..++|.+++|+|++|||||||++.|.++ |-.+.-...+ .
T Consensus 615 I~~~~vsF~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~g 693 (1495)
T PLN03232 615 ISIKNGYFSWDSK-TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNA 693 (1495)
T ss_pred EEEEeeEEEcCCC-CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccc
Confidence 4456666655421 111346788999999999999999999999999999975 2111000111 1
Q ss_pred --cccccC----CchhHHHHHHHhCC-----------cc-C------CCCCccchHhHHHHhcCChH--HHHHHHhhhhH
Q psy17138 111 --HRAYDV----GTRGNQVVRELFGE-----------DI-A------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWP 164 (212)
Q Consensus 111 --~~~~~~----~~~~~~~~~~~~g~-----------~~-~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p 164 (212)
+++... +...+...++..+. +- . -+.|+.+|-.|++.++++|+ +++.+.+.+++
T Consensus 694 TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~ 773 (1495)
T PLN03232 694 TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA 773 (1495)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 111110 11223333332221 10 0 13467889999999999998 66888888998
Q ss_pred HHHHHHHHH-HHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 165 LILAQVKEE-IARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 165 ~~~~~~~~~-i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
...+.+.+. +... ...+++++-+|-+.. ...||++++++
T Consensus 774 ~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~---l~~aD~Ii~L~ 813 (1495)
T PLN03232 774 HVAHQVFDSCMKDE-LKGKTRVLVTNQLHF---LPLMDRIILVS 813 (1495)
T ss_pred HHHHHHHHHHhhhh-hcCCEEEEEECChhh---HHhCCEEEEEe
Confidence 888777544 3332 234677777887643 35799998885
No 402
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.70 E-value=7.3e-09 Score=83.24 Aligned_cols=133 Identities=12% Similarity=0.016 Sum_probs=72.9
Q ss_pred CCCCCCCCCC-eEEEEecCCCCcHHHHHHHHH------HcCCeeeeCC--ccc--cccccCCchhHHHHHHHhCCccCCC
Q psy17138 67 QPKPHLSPYP-YIIGLTGGIASGKSTIAKYLE------TLGAGLINCD--QLG--HRAYDVGTRGNQVVRELFGEDIALP 135 (212)
Q Consensus 67 ~~~~~~~~~~-~iigl~G~~GsGKSTl~~~L~------~lg~~vi~~D--~i~--~~~~~~~~~~~~~~~~~~g~~~~~~ 135 (212)
.+.++....+ .+++|+|||||||||+++.+. ..|+.+.... .++ .+.+..-.. +..+.. +..-+ .
T Consensus 18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~--~~~l~~-~~s~f-s 93 (200)
T cd03280 18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGD--EQSIEQ-SLSTF-S 93 (200)
T ss_pred EcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCc--hhhhhc-CcchH-H
Confidence 3456667777 589999999999999999988 2243322111 111 111110000 000000 00000 1
Q ss_pred CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHH-HHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVK-EEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~-~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.++.++..+... ..+|+ +++++...++|.....+. ..++.+......+++.+|.. + +..+||+++.+.
T Consensus 94 ~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~-~--l~~~~d~~~~l~ 164 (200)
T cd03280 94 SHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG-E--LKAYAYKREGVE 164 (200)
T ss_pred HHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH-H--HHHHHhcCCCeE
Confidence 223334444433 45665 557788888998888774 45555543345777778863 2 456888876653
No 403
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.69 E-value=2.2e-08 Score=83.56 Aligned_cols=125 Identities=12% Similarity=0.094 Sum_probs=64.6
Q ss_pred EEEEecCCCCcHHHHHHHHHH----cC--CeeeeCCccccccccCCchhHHHH-H--HHhCCccCCC--CCccchHhHHH
Q psy17138 78 IIGLTGGIASGKSTIAKYLET----LG--AGLINCDQLGHRAYDVGTRGNQVV-R--ELFGEDIALP--DGSIDRKKLGA 146 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~----lg--~~vi~~D~i~~~~~~~~~~~~~~~-~--~~~g~~~~~~--~~~~~r~~l~~ 146 (212)
+|||+|+|||||||+++.|.. .| ..+++.|..-+ |.. ...... . ..-+... +. ....+...|..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr--~~r--~~~~~~~~~a~~~~~nf-dHf~PeAnd~dlL~~ 75 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR--YER--MEMKMAIAEALDAGRNF-SHFGPEANLFDLLEE 75 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc--CCc--hhHHHHHHHHhhcCCCC-CCCCcccccHHHHHH
Confidence 589999999999999998873 23 45677776443 111 111110 1 1111111 11 11233332221
Q ss_pred HhcCChHHHHHHHhhhhHHHHHHHH----------HHH--HhhcCCCcEEEEEecc----ccccccccccCeEEEEEeCC
Q psy17138 147 IVFSNKDEMNKLNQAIWPLILAQVK----------EEI--ARLSESHKVIVIEAAV----LLSAKWQDQVHEIWVTFIPE 210 (212)
Q Consensus 147 ~vf~~~~~~~~~~~i~~p~~~~~~~----------~~i--~~~~~~~~~vvie~~~----l~e~~~~~~~d~v~~v~~~~ 210 (212)
. -..+..-..+-.|.+.+... .+. .....+.+++|+||-. +....+++++|..++|+++.
T Consensus 76 ~----l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~ 151 (277)
T cd02029 76 L----FRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPII 151 (277)
T ss_pred H----HHHHHcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcH
Confidence 1 11111112233344433110 000 0011467899999996 33457889999999999876
Q ss_pred C
Q psy17138 211 Q 211 (212)
Q Consensus 211 ~ 211 (212)
+
T Consensus 152 d 152 (277)
T cd02029 152 N 152 (277)
T ss_pred H
Confidence 5
No 404
>PLN03140 ABC transporter G family member; Provisional
Probab=98.69 E-value=1.4e-08 Score=102.15 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=96.9
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC--------eeeeCCccc-----c-ccccCCc-------h---
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA--------GLINCDQLG-----H-RAYDVGT-------R--- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~--------~vi~~D~i~-----~-~~~~~~~-------~--- 119 (212)
..+++++....+|++++|+||||||||||+++|+++-. ..+++..+. + -.|.++. .
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 258 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence 45677889999999999999999999999999997521 122221110 0 0010000 0
Q ss_pred ----------------------------------------------------hHHHHHHHhCCccC------------CC
Q psy17138 120 ----------------------------------------------------GNQVVRELFGEDIA------------LP 135 (212)
Q Consensus 120 ----------------------------------------------------~~~~~~~~~g~~~~------------~~ 135 (212)
..+.+++.+|.+.. -+
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 01223444554321 13
Q ss_pred CCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 136 DGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 136 ~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.|+.+|..++..+..+|. +++++.+.+++.....+.+.+++.. .....+++..|...+ ...++||+++++.
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~-~i~~lfD~vilL~ 412 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAP-ETFDLFDDIILLS 412 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCH-HHHHHhheEEEee
Confidence 567788899999999988 5688899999999999998888875 345678887876542 2357999999875
No 405
>PRK06547 hypothetical protein; Provisional
Probab=98.66 E-value=3.6e-08 Score=77.59 Aligned_cols=37 Identities=30% Similarity=0.342 Sum_probs=31.7
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQL 109 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i 109 (212)
..++.+|+|.|++||||||+++.|++ ++..+++.|.+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~ 49 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDL 49 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccce
Confidence 45588999999999999999999974 78888888764
No 406
>PLN03140 ABC transporter G family member; Provisional
Probab=98.66 E-value=3.2e-08 Score=99.71 Aligned_cols=143 Identities=14% Similarity=0.038 Sum_probs=96.5
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-------eeeeCCccc-----cc-cccCCc-------h----
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-------GLINCDQLG-----HR-AYDVGT-------R---- 119 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-------~vi~~D~i~-----~~-~~~~~~-------~---- 119 (212)
..+++++....+|.+++|+||||||||||+++|+++.. ..+++-... +. .|.++. .
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~ 973 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRES 973 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHH
Confidence 45677888999999999999999999999999998621 223221110 00 011100 0
Q ss_pred --------------------hHHHHHHHhCCccC------------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHH
Q psy17138 120 --------------------GNQVVRELFGEDIA------------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL 165 (212)
Q Consensus 120 --------------------~~~~~~~~~g~~~~------------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~ 165 (212)
..+++++.+|..-. -+.|+.+|..++..+..+|+ +++++.+.+++.
T Consensus 974 L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~ 1053 (1470)
T PLN03140 974 LIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1053 (1470)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Confidence 11233444443211 12345667888888999998 568899999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 166 ILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 166 ~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
....+.+.+++.......+++.+|.+... ....||+++++.
T Consensus 1054 ~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~-i~~~~D~vllL~ 1094 (1470)
T PLN03140 1054 AAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELLLMK 1094 (1470)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHH-HHHhCCEEEEEc
Confidence 99999999988764456888889987521 235899998875
No 407
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.65 E-value=6.3e-08 Score=73.18 Aligned_cols=30 Identities=43% Similarity=0.644 Sum_probs=27.0
Q ss_pred EEEEecCCCCcHHHHHHHHHH-cCCeeeeCC
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-LGAGLINCD 107 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D 107 (212)
+|.|+|++||||||+++.|+. +|.++++.|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 479999999999999999985 789988877
No 408
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.64 E-value=1.4e-07 Score=76.14 Aligned_cols=65 Identities=11% Similarity=0.001 Sum_probs=47.5
Q ss_pred hHHHHhcCChH--HHHHHHhhhhHHHHH-HHHHHHHhhcCC-CcEEEEEeccccccccccccCeEEEEEeCC
Q psy17138 143 KLGAIVFSNKD--EMNKLNQAIWPLILA-QVKEEIARLSES-HKVIVIEAAVLLSAKWQDQVHEIWVTFIPE 210 (212)
Q Consensus 143 ~l~~~vf~~~~--~~~~~~~i~~p~~~~-~~~~~i~~~~~~-~~~vvie~~~l~e~~~~~~~d~v~~v~~~~ 210 (212)
.++..+..+|. +++++.+.++|.... .+.+.+.+.... ...+++-+|.+.. ...||+++.+.-+.
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~---~~~~d~i~~l~~~~ 199 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEEL---VDAADHIYRVEKDG 199 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHH---HhhCCEEEEEeeCC
Confidence 45566667777 568888899999998 898888877532 4466666887644 35799999887553
No 409
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.63 E-value=9.7e-08 Score=86.65 Aligned_cols=143 Identities=11% Similarity=0.110 Sum_probs=76.9
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc----cc----CC-chhHHHHHHHhCCccCC
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA----YD----VG-TRGNQVVRELFGEDIAL 134 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~----~~----~~-~~~~~~~~~~~g~~~~~ 134 (212)
-.+++.+.. ++.+|+|.|||||||||+++.|+ .+|+.+++++.+.+.+ .. .. ......++..+......
T Consensus 274 LIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~ 352 (512)
T PRK13477 274 LIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKP 352 (512)
T ss_pred EEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeecc
Confidence 345555555 68999999999999999999998 5799999988765543 11 10 01111112111111100
Q ss_pred C-CCc----cchHhHHHHhcCChHHHHHHHh-hhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 135 P-DGS----IDRKKLGAIVFSNKDEMNKLNQ-AIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 135 ~-~~~----~~r~~l~~~vf~~~~~~~~~~~-i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
. ++. ++-..+...+ ..+..-..... -..|.+++.+....+++.... -+++|+.++-.. ....+|..+|++|
T Consensus 353 ~~~~~~~i~~~~~dv~~~i-Rs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~-~iV~eGRDigtv-V~P~AdlKIfL~A 429 (512)
T PRK13477 353 SSGSPQRVWINGEDVTEAI-RSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKG-GLVAEGRDIGTH-VFPDAELKIFLTA 429 (512)
T ss_pred CCCCCceEEeCCcchHhhh-cchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcC-CEEEEcccceeE-EcCCCCEEEEEEC
Confidence 0 000 0000011000 11111111111 145778888877766654222 489999985432 1234799999999
Q ss_pred CCC
Q psy17138 209 PEQ 211 (212)
Q Consensus 209 ~~~ 211 (212)
+.+
T Consensus 430 s~e 432 (512)
T PRK13477 430 SVE 432 (512)
T ss_pred CHH
Confidence 875
No 410
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.63 E-value=3.4e-07 Score=73.70 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=71.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccc--------cCC-chhHHHHHHHhCCccCCCCCccchHhHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAY--------DVG-TRGNQVVRELFGEDIALPDGSIDRKKLG 145 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~--------~~~-~~~~~~~~~~~g~~~~~~~~~~~r~~l~ 145 (212)
..+|+|-||+||||||+++.|+ .||+.++++..+-+.+- ... ......+...+....... +
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~----~----- 74 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVND----D----- 74 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceeccc----c-----
Confidence 3789999999999999999998 68999998765433210 000 011111111111111000 0
Q ss_pred HHhcCChHH----H-HHHHh-----hhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCCC
Q psy17138 146 AIVFSNKDE----M-NKLNQ-----AIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212 (212)
Q Consensus 146 ~~vf~~~~~----~-~~~~~-----i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~~ 212 (212)
+.++.+.+. + +...+ -.+|.+++.+.++.++......-+++||-.+=-. ..--++..+|+++++|+
T Consensus 75 ~v~l~gedvs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGTv-V~PdA~lKiFLtAS~e~ 150 (222)
T COG0283 75 RVFLNGEDVSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGTV-VFPDAELKIFLTASPEE 150 (222)
T ss_pred eEEECCchhhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcce-ECCCCCeEEEEeCCHHH
Confidence 011111111 0 11111 2568888888777776654445688888876432 22356889999988763
No 411
>PLN03130 ABC transporter C family member; Provisional
Probab=98.63 E-value=3.3e-08 Score=100.64 Aligned_cols=155 Identities=14% Similarity=0.112 Sum_probs=96.6
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc------CCeeeeCCcc---c-------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL------GAGLINCDQL---G------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l------g~~vi~~D~i---~------- 110 (212)
..+++.++++... .....++++++..++|.+++|+|++|||||||++.|.+. |...+.. .+ .
T Consensus 615 I~~~nvsf~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~-~Iayv~Q~p~Lfn 692 (1622)
T PLN03130 615 ISIKNGYFSWDSK-AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG-TVAYVPQVSWIFN 692 (1622)
T ss_pred eEEEeeEEEccCC-CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC-eEEEEcCccccCC
Confidence 4456666655321 111346788999999999999999999999999999975 2211111 11 1
Q ss_pred ---cccccC----CchhHHHHHHHhC-----------Ccc-C------CCCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138 111 ---HRAYDV----GTRGNQVVRELFG-----------EDI-A------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIW 163 (212)
Q Consensus 111 ---~~~~~~----~~~~~~~~~~~~g-----------~~~-~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~ 163 (212)
+++... ....+...++..+ .+. . -+.|+.+|-.|++.++++++ +++.+.+.++
T Consensus 693 gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD 772 (1622)
T PLN03130 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772 (1622)
T ss_pred CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence 111111 1122333332211 110 0 13467889999999999998 6678888899
Q ss_pred HHHHHHHHH-HHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 164 PLILAQVKE-EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 164 p~~~~~~~~-~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+...+.+.+ .+.... ..+++++-+|-+.. ...||++++++
T Consensus 773 ~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~---l~~aD~Ii~L~ 813 (1622)
T PLN03130 773 AHVGRQVFDKCIKDEL-RGKTRVLVTNQLHF---LSQVDRIILVH 813 (1622)
T ss_pred HHHHHHHHHHHhhHHh-cCCEEEEEECCHhH---HHhCCEEEEEe
Confidence 887776643 344332 34677777888743 46799998875
No 412
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.62 E-value=2.1e-08 Score=78.55 Aligned_cols=136 Identities=20% Similarity=0.218 Sum_probs=77.3
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccc---------ccc--------------------cc
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLG---------HRA--------------------YD 115 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~---------~~~--------------------~~ 115 (212)
.+.+...|+++-++|||||||||++..++++ |-..+++-.+. |.. +.
T Consensus 18 lS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~q 97 (248)
T COG4138 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQ 97 (248)
T ss_pred cccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcC
Confidence 4467889999999999999999999999987 44444443321 111 22
Q ss_pred CCchh---HHHHHHHhCCccC-------CCCCccchHhHHHHhcC-----ChH----HHHHHHhhhhHHHHHHHHHHHHh
Q psy17138 116 VGTRG---NQVVRELFGEDIA-------LPDGSIDRKKLGAIVFS-----NKD----EMNKLNQAIWPLILAQVKEEIAR 176 (212)
Q Consensus 116 ~~~~~---~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~-----~~~----~~~~~~~i~~p~~~~~~~~~i~~ 176 (212)
|.... .+.+....+.+.. -+.|..+|..++..+.| ||. +++++-+-++-.-...+...+.+
T Consensus 98 P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~ 177 (248)
T COG4138 98 PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSA 177 (248)
T ss_pred chHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHH
Confidence 22111 2223333322110 13567788888765554 222 22333333433333333334444
Q ss_pred hcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 177 LSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 177 ~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
+-.....|++.+|.|..+ ..-+|++|.+
T Consensus 178 ~c~~G~~vims~HDLNhT--LrhA~~~wLL 205 (248)
T COG4138 178 LCQQGLAIVMSSHDLNHT--LRHAHRAWLL 205 (248)
T ss_pred HHhCCcEEEEeccchhhH--HHHHHHHHHH
Confidence 434567889999999865 3456777653
No 413
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.62 E-value=4.3e-08 Score=79.52 Aligned_cols=70 Identities=10% Similarity=0.023 Sum_probs=49.6
Q ss_pred CCccchHhHHHHhcC----------ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeE
Q psy17138 136 DGSIDRKKLGAIVFS----------NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEI 203 (212)
Q Consensus 136 ~~~~~r~~l~~~vf~----------~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v 203 (212)
.|+..|..++..+.. +|+ +++++.+.++|...+.+.+.+.++......+++-+|.+... ..+||++
T Consensus 126 ~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~--~~~~~~i 203 (213)
T cd03279 126 GGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELK--ERIPQRL 203 (213)
T ss_pred HHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHH--HhhCcEE
Confidence 456667777766643 333 45677888999999999888877754355777779987654 4678888
Q ss_pred EEEE
Q psy17138 204 WVTF 207 (212)
Q Consensus 204 ~~v~ 207 (212)
+++.
T Consensus 204 ~~~~ 207 (213)
T cd03279 204 EVIK 207 (213)
T ss_pred EEEe
Confidence 8875
No 414
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.62 E-value=1.6e-08 Score=80.41 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=94.9
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC-cc------------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD-QL------------ 109 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D-~i------------ 109 (212)
.+.+.+.+|+ -.+++++.++....|++-+|+||||+||||++..|.+. |-.+++.+ ++
T Consensus 7 ~~~~vsVsF~----GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 7 YLDGVSVSFG----GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred EEeceEEEEc----ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 3555666665 23788889999999999999999999999999999975 44555542 11
Q ss_pred -ccccccCC---------------------------------chhHHHHHHHhCCccC-------CCCCccchHhHHHHh
Q psy17138 110 -GHRAYDVG---------------------------------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIV 148 (212)
Q Consensus 110 -~~~~~~~~---------------------------------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~v 148 (212)
++..-.|. ....+++....|..-. -+-|+.++..++..+
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll 162 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL 162 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee
Confidence 11111111 0012222332222110 134677888898888
Q ss_pred cCChHH--HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 149 FSNKDE--MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 149 f~~~~~--~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
.|+|.+ ++++-+.+-.+-....-+.++.++..+.++++ .|.|-- .+.++++|.++
T Consensus 163 ~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVV-EHDM~F--vr~~A~~VTVl 219 (249)
T COG4674 163 AQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVV-EHDMGF--VREIADKVTVL 219 (249)
T ss_pred ccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEE-eccHHH--HHHhhheeEEE
Confidence 899984 46666666666666777777777555556666 555532 13466666554
No 415
>PTZ00243 ABC transporter; Provisional
Probab=98.61 E-value=3.5e-08 Score=100.18 Aligned_cols=139 Identities=17% Similarity=0.080 Sum_probs=88.4
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeee-------CCc-c----ccccccCC----chhHHH
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLIN-------CDQ-L----GHRAYDVG----TRGNQV 123 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~-------~D~-i----~~~~~~~~----~~~~~~ 123 (212)
.++++++..++|.+++|+|+||||||||+++|.++ |...++ -+. + .++....+ ...+..
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~ 754 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLAD 754 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHH
Confidence 45678889999999999999999999999999986 221111 010 0 01111000 001111
Q ss_pred HH---------HHh--CC------ccC-CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH-HhhcCCCc
Q psy17138 124 VR---------ELF--GE------DIA-LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI-ARLSESHK 182 (212)
Q Consensus 124 ~~---------~~~--g~------~~~-~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i-~~~~~~~~ 182 (212)
.+ +.+ |. ... -+.|+.+|-.|++.+..+|+ +++++.+.+++...+.+.+.+ ... ...+
T Consensus 755 ~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~-~~~~ 833 (1560)
T PTZ00243 755 AVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA-LAGK 833 (1560)
T ss_pred HHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHh-hCCC
Confidence 11 112 11 110 13467788899999999998 668888999998877775533 222 2346
Q ss_pred EEEEEeccccccccccccCeEEEEE
Q psy17138 183 VIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 183 ~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+++-+|.+... ..||++++++
T Consensus 834 TvIlvTH~~~~~---~~ad~ii~l~ 855 (1560)
T PTZ00243 834 TRVLATHQVHVV---PRADYVVALG 855 (1560)
T ss_pred EEEEEeCCHHHH---HhCCEEEEEE
Confidence 777779988654 4799999875
No 416
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.61 E-value=2.2e-08 Score=87.11 Aligned_cols=32 Identities=38% Similarity=0.368 Sum_probs=29.7
Q ss_pred CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
++.....+|+++.|+|.|||||||+++.|.||
T Consensus 341 PiNl~ikrGelvFliG~NGsGKST~~~LLtGL 372 (546)
T COG4615 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGL 372 (546)
T ss_pred ceeeEEecCcEEEEECCCCCcHHHHHHHHhcc
Confidence 35678999999999999999999999999998
No 417
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.61 E-value=3.3e-08 Score=79.61 Aligned_cols=160 Identities=19% Similarity=0.221 Sum_probs=102.4
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC--eeeeCCcc-----------------
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA--GLINCDQL----------------- 109 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~--~vi~~D~i----------------- 109 (212)
|.+..+.+.+....+++++.++.....|++-|++|.||||||-++|.+++..- -.+-+|..
T Consensus 6 IrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk 85 (330)
T COG4170 6 IRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred ccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhh
Confidence 56666777766678899999999999999999999999999999999997411 11122221
Q ss_pred --cccc----------ccCCchhHH---------------------------HHHHHhCCcc----C------CCCCccc
Q psy17138 110 --GHRA----------YDVGTRGNQ---------------------------VVRELFGEDI----A------LPDGSID 140 (212)
Q Consensus 110 --~~~~----------~~~~~~~~~---------------------------~~~~~~g~~~----~------~~~~~~~ 140 (212)
++++ +.|+...-. ++.+..|... . -.+|.-+
T Consensus 86 ~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~Q 165 (330)
T COG4170 86 LVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQ 165 (330)
T ss_pred hhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcce
Confidence 1111 111111111 1122222210 0 0234444
Q ss_pred hHhHHHHhcCChHHH--HHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCC
Q psy17138 141 RKKLGAIVFSNKDEM--NKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPE 210 (212)
Q Consensus 141 r~~l~~~vf~~~~~~--~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~ 210 (212)
+..++-.+...|.++ +++++-+.|.....+.+.+..+. .....+++-+|.+.- +..+||++-+++|-.
T Consensus 166 KVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~--is~W~d~i~VlYCGQ 236 (330)
T COG4170 166 KVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM--ISQWADKINVLYCGQ 236 (330)
T ss_pred eeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH--HHHHhhheEEEEecc
Confidence 555555566666643 56778888998888888887776 445677777888854 467899999998853
No 418
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.58 E-value=2e-07 Score=73.44 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=28.4
Q ss_pred CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL 109 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i 109 (212)
..+++|+|++||||||+++.|+ .+|+.+++++.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~ 37 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDL 37 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence 5689999999999999999997 568888776543
No 419
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.56 E-value=5.2e-08 Score=71.51 Aligned_cols=31 Identities=45% Similarity=0.583 Sum_probs=28.3
Q ss_pred EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCc
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQ 108 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~ 108 (212)
+|+|+|++||||||+++.|+. +|+.++++|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 589999999999999999996 6999998876
No 420
>KOG0061|consensus
Probab=98.56 E-value=5.5e-08 Score=90.49 Aligned_cols=143 Identities=13% Similarity=0.090 Sum_probs=98.8
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC--------CeeeeCCcc-----------------------c--
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG--------AGLINCDQL-----------------------G-- 110 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg--------~~vi~~D~i-----------------------~-- 110 (212)
+-+++++.....|++.||.||||||||||+++|++.. ...+++-.. .
T Consensus 44 ~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~E 123 (613)
T KOG0061|consen 44 TILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRE 123 (613)
T ss_pred eeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHH
Confidence 4456677788899999999999999999999999752 222333110 0
Q ss_pred -----cccccCC-------chhHHHHHHHhCCccC------------CCCCccchHhHHHHhcCChH--HHHHHHhhhhH
Q psy17138 111 -----HRAYDVG-------TRGNQVVRELFGEDIA------------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWP 164 (212)
Q Consensus 111 -----~~~~~~~-------~~~~~~~~~~~g~~~~------------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p 164 (212)
..+..+. ...++.++..+|..-. .+.|+..|..+|.-+..||. .+++++..++.
T Consensus 124 tL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS 203 (613)
T KOG0061|consen 124 TLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDS 203 (613)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcch
Confidence 0011111 1235556666665411 12357778889988899998 45889999999
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 165 LILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 165 ~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.....+-+.+++...+.++|+...|-.-- .+.+++|+++++.
T Consensus 204 ~sA~~vv~~Lk~lA~~grtVi~tIHQPss-~lf~lFD~l~lLs 245 (613)
T KOG0061|consen 204 FSALQVVQLLKRLARSGRTVICTIHQPSS-ELFELFDKLLLLS 245 (613)
T ss_pred hhHHHHHHHHHHHHhCCCEEEEEEeCCcH-HHHHHHhHhhhhc
Confidence 99999988888887558999999997643 3556788776653
No 421
>PRK04040 adenylate kinase; Provisional
Probab=98.56 E-value=2.4e-07 Score=73.95 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=26.7
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-c--CCeeeeCC
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-L--GAGLINCD 107 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-l--g~~vi~~D 107 (212)
+.+|+|+|.+||||||+++.|.. + ++.+++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g 36 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFG 36 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecc
Confidence 57899999999999999999974 5 67766644
No 422
>PRK15453 phosphoribulokinase; Provisional
Probab=98.55 E-value=1.3e-07 Score=79.57 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=28.7
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH-c-----CCeeeeCCc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET-L-----GAGLINCDQ 108 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~-l-----g~~vi~~D~ 108 (212)
+.++.+|||+|+|||||||+++.|+. + ...+++.|.
T Consensus 2 s~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~ 43 (290)
T PRK15453 2 SAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDS 43 (290)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 45678999999999999999999974 2 245666664
No 423
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.55 E-value=2.3e-07 Score=77.72 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=51.1
Q ss_pred CccchHhHHHHhcCC---hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 137 GSIDRKKLGAIVFSN---KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 137 ~~~~r~~l~~~vf~~---~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
|+.+|-.++..+..+ |. +++++...++|.....+.+.+.++......+++-+|.+... ..||+++.+
T Consensus 173 Ge~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i---~~aD~ii~L 244 (261)
T cd03271 173 GEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVI---KCADWIIDL 244 (261)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH---HhCCEEEEe
Confidence 566788888877775 44 56788899999999999998887764455677778988654 368988776
No 424
>PLN02200 adenylate kinase family protein
Probab=98.54 E-value=3.7e-07 Score=75.31 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=31.6
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLG 110 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~ 110 (212)
...+.+|.|+|++||||||+++.|+ .+|+.+++++.+.
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdll 78 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLL 78 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHH
Confidence 4457899999999999999999997 5799888875443
No 425
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4.2e-07 Score=79.67 Aligned_cols=140 Identities=18% Similarity=0.183 Sum_probs=89.5
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------------------------cc
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------------------------HR 112 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------------------------~~ 112 (212)
.-+.++++..+.|..++++|++|+||||+++.|-++ |...+|...+. +.
T Consensus 277 ~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yn 356 (497)
T COG5265 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYN 356 (497)
T ss_pred hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHH
Confidence 344667889999999999999999999999999864 55555433320 00
Q ss_pred c-ccCCch------------hHHHHHHHhC--------CccC-CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 113 A-YDVGTR------------GNQVVRELFG--------EDIA-LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 113 ~-~~~~~~------------~~~~~~~~~g--------~~~~-~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
+ |..... .....++.+. +..+ -+.|+.+|..+++.+..+|. .+++.+..++....+
T Consensus 357 i~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~ 436 (497)
T COG5265 357 IKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQ 436 (497)
T ss_pred HhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHH
Confidence 0 000000 0111112111 1111 24578889999999999998 457777788887778
Q ss_pred HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++..++....++..+++ +|-|--- --+|++++++
T Consensus 437 ~iq~~l~~~~~~rttlvi-ahrlsti---~~adeiivl~ 471 (497)
T COG5265 437 AIQAALREVSAGRTTLVI-AHRLSTI---IDADEIIVLD 471 (497)
T ss_pred HHHHHHHHHhCCCeEEEE-eehhhhc---cCCceEEEee
Confidence 887777777656666666 6766431 2468887765
No 426
>PRK13946 shikimate kinase; Provisional
Probab=98.53 E-value=3.2e-07 Score=72.75 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=30.9
Q ss_pred CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL 109 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i 109 (212)
....|.|+|++||||||+++.|+ .||++++++|.+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~ 44 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTE 44 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHH
Confidence 35679999999999999999998 589999999854
No 427
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.53 E-value=1.6e-07 Score=73.69 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=39.0
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
++++.++.|.. .+.-.+++|....|+++||+|.||||||||+++|.+.
T Consensus 8 ~V~~lsk~Yg~----~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r 55 (258)
T COG4107 8 SVSGLSKLYGP----GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR 55 (258)
T ss_pred eehhhhhhhCC----CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcc
Confidence 35666666642 2455679999999999999999999999999999863
No 428
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.52 E-value=3.5e-07 Score=71.02 Aligned_cols=35 Identities=40% Similarity=0.495 Sum_probs=30.7
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQL 109 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i 109 (212)
++..|.|+|++||||||+++.|+. +|+.+++.|.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~ 38 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHL 38 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHH
Confidence 467899999999999999999984 79999988754
No 429
>KOG0062|consensus
Probab=98.50 E-value=1.2e-07 Score=84.65 Aligned_cols=120 Identities=14% Similarity=0.071 Sum_probs=74.7
Q ss_pred CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc---CCee---eeCCcccc------------ccccCCc---------hh
Q psy17138 68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL---GAGL---INCDQLGH------------RAYDVGT---------RG 120 (212)
Q Consensus 68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l---g~~v---i~~D~i~~------------~~~~~~~---------~~ 120 (212)
.-++...+|...||+|+||+|||||+|+|+.- ++++ +.+|.+.+ ++...+. ..
T Consensus 98 ~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei 177 (582)
T KOG0062|consen 98 KANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEI 177 (582)
T ss_pred CCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHH
Confidence 34556788999999999999999999999862 3333 22333322 1111110 11
Q ss_pred HHHHHHHhCCcc-------CC-CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecc
Q psy17138 121 NQVVRELFGEDI-------AL-PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAV 190 (212)
Q Consensus 121 ~~~~~~~~g~~~-------~~-~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~ 190 (212)
+..++.-+|-.- -. +.|=..|..|++.+|++|+ ++++++|.++-.....+..-+... ..++++.+|.
T Consensus 178 ~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD 254 (582)
T KOG0062|consen 178 YDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD 254 (582)
T ss_pred HHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc
Confidence 111222233211 00 2333458899999999999 568899999888777877777654 2466666774
No 430
>KOG0054|consensus
Probab=98.50 E-value=5e-07 Score=89.52 Aligned_cols=159 Identities=14% Similarity=0.143 Sum_probs=99.6
Q ss_pred cccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH-c----CCeeeeCCc--c--------
Q psy17138 45 EEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET-L----GAGLINCDQ--L-------- 109 (212)
Q Consensus 45 ~~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~-l----g~~vi~~D~--i-------- 109 (212)
....+++.+..+.. ...-..++++++..++|.+++|+|+.|||||+|+.+|.| + |...+++.. +
T Consensus 517 ~~i~i~~~sfsW~~-~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~n 595 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDS-ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQN 595 (1381)
T ss_pred ceEEEeeeeEecCC-CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhC
Confidence 33456666666544 223336788899999999999999999999999999986 3 333333221 0
Q ss_pred --ccccccCC----chhHHHHHHHhC-----------Cc------cC-CCCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138 110 --GHRAYDVG----TRGNQVVRELFG-----------ED------IA-LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIW 163 (212)
Q Consensus 110 --~~~~~~~~----~~~~~~~~~~~g-----------~~------~~-~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~ 163 (212)
.+++...+ ...|+..++.-. +. .. -++|+.+|-.||+.|++|.+ +++.+-..++
T Consensus 596 gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVD 675 (1381)
T KOG0054|consen 596 GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVD 675 (1381)
T ss_pred CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhh
Confidence 11111111 234555544321 11 01 14578889999999999988 5666666666
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 164 PLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 164 p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
..+-+.+.+..-...-.++++++.+|.+. +...||.++++.
T Consensus 676 ahvg~~if~~ci~~~L~~KT~ILVTHql~---~L~~ad~Iivl~ 716 (1381)
T KOG0054|consen 676 AHVGKHIFEECIRGLLRGKTVILVTHQLQ---FLPHADQIIVLK 716 (1381)
T ss_pred HhhhHHHHHHHHHhhhcCCEEEEEeCchh---hhhhCCEEEEec
Confidence 66666654443222245678888899543 346789998874
No 431
>KOG0927|consensus
Probab=98.50 E-value=2.3e-07 Score=83.34 Aligned_cols=153 Identities=15% Similarity=0.099 Sum_probs=91.2
Q ss_pred ccccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCee--------eeCCccc-----
Q psy17138 44 QEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGL--------INCDQLG----- 110 (212)
Q Consensus 44 ~~~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~v--------i~~D~i~----- 110 (212)
....++++.++.|. ...+..+..++..+|+.+||+|+|||||||+++++.+--.|. ++.....
T Consensus 73 s~dvk~~sls~s~~----g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH----GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQA 148 (614)
T ss_pred cccceeeeeeeccC----CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHH
Confidence 45566777777665 225567788899999999999999999999999998642221 1111000
Q ss_pred -ccc-----------------ccC---C--ch----hHH---------------HHHHHhCCc-------cC-CCCCccc
Q psy17138 111 -HRA-----------------YDV---G--TR----GNQ---------------VVRELFGED-------IA-LPDGSID 140 (212)
Q Consensus 111 -~~~-----------------~~~---~--~~----~~~---------------~~~~~~g~~-------~~-~~~~~~~ 140 (212)
+.. |.. + .. .++ .+..-.|.. +. -++|...
T Consensus 149 v~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrm 228 (614)
T KOG0927|consen 149 VQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRM 228 (614)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHH
Confidence 000 000 0 00 000 000001100 00 0345556
Q ss_pred hHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEE
Q psy17138 141 RKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIW 204 (212)
Q Consensus 141 r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~ 204 (212)
|..|+..+|+.|+ +++.+.+.+++.....+.+.+.+.. ...+++..|.-.- +..+|.-++
T Consensus 229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d--~~~lVi~sh~QDf--ln~vCT~Ii 290 (614)
T KOG0927|consen 229 RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD--RIILVIVSHSQDF--LNGVCTNII 290 (614)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc--CceEEEEecchhh--hhhHhhhhh
Confidence 8899999999999 5688999999999999998887642 2245554665321 233554443
No 432
>KOG3308|consensus
Probab=98.49 E-value=2.5e-07 Score=73.65 Aligned_cols=128 Identities=18% Similarity=0.223 Sum_probs=66.1
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc--CCeeeeCCccccccccCCchhHHHHHHHh-CCccCCCCCccchHh----HHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL--GAGLINCDQLGHRAYDVGTRGNQVVRELF-GEDIALPDGSIDRKK----LGAI 147 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l--g~~vi~~D~i~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~r~~----l~~~ 147 (212)
+-.+|||.|.+-||||||++.|..+ |+.+|+-|+ .|.+.. ++.... |..-++....++..+ ++.+
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDD----FyKp~~----Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~ 74 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDD----FYKPEN----EIEVDYNNIDNWDLLESLDMEKFLEKIATW 74 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeecccc----ccCchh----hhhcccCCcchhcchhhhhHHHHHHHHHHH
Confidence 3478999999999999999999875 677777664 333331 111111 111111111222221 2211
Q ss_pred hcCChHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecccccc-ccccccCeEEEEEeCCC
Q psy17138 148 VFSNKDEMN-KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSA-KWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 148 vf~~~~~~~-~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~-~~~~~~d~v~~v~~~~~ 211 (212)
+-+ +...+ ..+.++.-....+....-..-..+..++++|+.++++. +..+.||+.+++.+|-+
T Consensus 75 l~~-~~~~~~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~ 139 (225)
T KOG3308|consen 75 LDS-RHNAPEAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYE 139 (225)
T ss_pred hcC-ccccchHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHH
Confidence 111 00000 00111111111111111111114567899999999963 56789999999988754
No 433
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.48 E-value=8.2e-08 Score=69.58 Aligned_cols=42 Identities=17% Similarity=-0.043 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCC
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCD 107 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D 107 (212)
++.++++....+.+++|+||||||||||++++. -|...++.+
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-~G~i~~~g~ 45 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI-KRKHRLVGD 45 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-CCeEEEeeE
Confidence 445567778889999999999999999999987 333344443
No 434
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.46 E-value=3.9e-07 Score=69.84 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=29.5
Q ss_pred CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+++.+.+|+++.|.|||||||||++..+.+.
T Consensus 19 a~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~ 51 (213)
T COG4136 19 ANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGA 51 (213)
T ss_pred EeeeEEecCCcEEEEECCCCccHHHHHHHHHhh
Confidence 346788999999999999999999999999874
No 435
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.44 E-value=6.3e-07 Score=74.31 Aligned_cols=72 Identities=6% Similarity=0.013 Sum_probs=49.5
Q ss_pred ccchHhHHHHhcC----ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 138 SIDRKKLGAIVFS----NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 138 ~~~r~~l~~~vf~----~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
+.+|..++..+.. .|. +++++.+.+++.....+.+.+.++......+++-+|... +...||+++.+.-+.+
T Consensus 160 ~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~---~~~~~d~i~~~~~~~~ 236 (247)
T cd03275 160 EKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEE---FFSKADALVGVYRDQE 236 (247)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHH---HHhhCCeEEEEEecCC
Confidence 3445556654432 344 557888889999999998888887533446666688742 3468999999987765
Q ss_pred C
Q psy17138 212 E 212 (212)
Q Consensus 212 ~ 212 (212)
+
T Consensus 237 ~ 237 (247)
T cd03275 237 C 237 (247)
T ss_pred C
Confidence 3
No 436
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.44 E-value=8.5e-07 Score=69.17 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=30.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR 112 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~ 112 (212)
..+.|+|++||||||+++.|+. +|+++++.|.+.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~ 39 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQS 39 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHH
Confidence 3578999999999999999985 79999998865544
No 437
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.43 E-value=3.2e-08 Score=74.20 Aligned_cols=31 Identities=32% Similarity=0.254 Sum_probs=27.8
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+++...+|.+++|+|+||||||||+++|.++
T Consensus 4 v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 4 VSLEIKPGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEETTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEEccCCCccccceeeeccc
Confidence 4556778999999999999999999999986
No 438
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.40 E-value=1.6e-06 Score=76.88 Aligned_cols=134 Identities=16% Similarity=0.108 Sum_probs=79.1
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCc------hhHHHHHH-----HhCCc---------
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGT------RGNQVVRE-----LFGED--------- 131 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~------~~~~~~~~-----~~g~~--------- 131 (212)
....++++|++||||-||||++++|++.--+.=..+.-.+-.|.|+. ...+.++. .++..
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~p 442 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKP 442 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCc
Confidence 56789999999999999999999999741110000000011122220 01111110 01111
Q ss_pred ----------cC-CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccc
Q psy17138 132 ----------IA-LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQ 197 (212)
Q Consensus 132 ----------~~-~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~ 197 (212)
+. -+.|.++|..++..+..+.+ +++++.+.++-+-+-.+...|+... ...+..++-.|.++-..
T Consensus 443 l~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~d-- 520 (591)
T COG1245 443 LNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMID-- 520 (591)
T ss_pred cchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhh--
Confidence 10 14578999999988888776 6788888888776655555555554 44566666677776542
Q ss_pred cccCeEEEEE
Q psy17138 198 DQVHEIWVTF 207 (212)
Q Consensus 198 ~~~d~v~~v~ 207 (212)
=+.|+++++.
T Consensus 521 yvsDr~ivF~ 530 (591)
T COG1245 521 YVSDRLIVFE 530 (591)
T ss_pred hhhceEEEEe
Confidence 2567777664
No 439
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.40 E-value=1.4e-06 Score=68.49 Aligned_cols=33 Identities=36% Similarity=0.451 Sum_probs=29.0
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQ 108 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~ 108 (212)
...|.|+|++||||||+++.|++ +|++++++|.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 45699999999999999999984 6889998885
No 440
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.40 E-value=2.4e-06 Score=70.00 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=31.4
Q ss_pred CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH 111 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~ 111 (212)
..+|+|.|++||||||+++.|+ .+|+++++++.+.+
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r 40 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYR 40 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHH
Confidence 4789999999999999999997 68999999887543
No 441
>PRK06217 hypothetical protein; Validated
Probab=98.39 E-value=3.8e-07 Score=72.21 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=31.5
Q ss_pred eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHR 112 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~ 112 (212)
..|.|+|++||||||+++.|+ .+|+++++.|.+.+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~ 38 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWL 38 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeec
Confidence 569999999999999999998 579999999976653
No 442
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.39 E-value=2.9e-07 Score=74.78 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=46.6
Q ss_pred CccchHhHHHHhc----CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 137 GSIDRKKLGAIVF----SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 137 ~~~~r~~l~~~vf----~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
|+.+|..++..+. ++|+ .++++.+.++|.....+++.++++..+..++++ +|.. ...++||+++++.-
T Consensus 131 G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iiv-s~~~---~~~~~~d~v~~~~~ 204 (212)
T cd03274 131 GEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVI-SLRN---NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEE-ECcH---HHHHhCCEEEEEEe
Confidence 3445666665442 2344 567888899999999999999887544445555 5653 24579999998864
No 443
>KOG0054|consensus
Probab=98.38 E-value=4.5e-07 Score=89.87 Aligned_cols=159 Identities=16% Similarity=0.093 Sum_probs=104.5
Q ss_pred ccccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------
Q psy17138 44 QEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG-------- 110 (212)
Q Consensus 44 ~~~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~-------- 110 (212)
..+..+.+.+.||+.. .-..++++++....++.|||+|..|||||||+..|-++ |...||.-++.
T Consensus 1136 ~G~I~f~~~~~RYrp~--lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPN--LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred CCeEEEEEeEEEeCCC--CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHH
Confidence 4445688888888643 22466889999999999999999999999999999876 66677654441
Q ss_pred -----------------cccccCCchh-------------HHHHHHHhCCcc--C-C------CCCccchHhHHHHhcCC
Q psy17138 111 -----------------HRAYDVGTRG-------------NQVVRELFGEDI--A-L------PDGSIDRKKLGAIVFSN 151 (212)
Q Consensus 111 -----------------~~~~~~~~~~-------------~~~~~~~~g~~~--~-~------~~~~~~r~~l~~~vf~~ 151 (212)
+.+++|.... ....+....... . . +-|+.+--.|++.+...
T Consensus 1214 srlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~ 1293 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRK 1293 (1381)
T ss_pred hcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhcc
Confidence 2222222110 112222222111 0 1 12344455677777766
Q ss_pred hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 152 KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
.+ .+++.++-+++..+.-+++-|++..++. +|+.=+|=+.-- --||+|+++|.
T Consensus 1294 skILvLDEATAsVD~~TD~lIQ~tIR~~F~dc-TVltIAHRl~TV---md~DrVlVld~ 1348 (1381)
T KOG0054|consen 1294 SKILVLDEATASVDPETDALIQKTIREEFKDC-TVLTIAHRLNTV---MDSDRVLVLDA 1348 (1381)
T ss_pred CCEEEEecccccCChHHHHHHHHHHHHHhcCC-eEEEEeeccchh---hhcCeEEEeeC
Confidence 65 4577788899999999999998876444 444447776532 25899999875
No 444
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.34 E-value=2.6e-07 Score=72.13 Aligned_cols=51 Identities=20% Similarity=0.088 Sum_probs=43.6
Q ss_pred ceechhhhhhh---hccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 48 KLSSSNLRMRE---LGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 48 ~iss~~~r~~~---~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+++.++.|.. .|-.+..++++++....|+++.+-|||||||||++|+|-+
T Consensus 6 ~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYa 59 (235)
T COG4778 6 NVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYA 59 (235)
T ss_pred eeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHh
Confidence 35666777754 3667888899999999999999999999999999999975
No 445
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.34 E-value=1.1e-06 Score=81.18 Aligned_cols=98 Identities=20% Similarity=0.145 Sum_probs=69.3
Q ss_pred HHHHHHHHCCCCCccEEEeecccC-------CCCCCcccccceechhhhhhhhccccCCCCC-------------CCCCC
Q psy17138 14 KVNELRVANSLKPLDVVSVPLLPS-------DGKVDEQEEDKLSSSNLRMRELGTLRKPVQP-------------KPHLS 73 (212)
Q Consensus 14 ~in~~r~~~gl~~l~~~~i~~~~~-------~~~~~~~~~~~iss~~~r~~~~g~~l~~~~~-------------~~~~~ 73 (212)
-+.+.-.+.|++++.+..+.|-.. +.++.+.+-..+|++.+|....... .||+. .+...
T Consensus 311 i~~~~~~~l~i~~~~~~~~~Y~~~~~~~~~~~~cph~~~~~~~sgt~ir~~l~~G~-~pP~~f~rpeV~~iL~~~~~~r~ 389 (568)
T PRK05537 311 LFAKYADEIGITMVPFKEMVYVQDKAQYVPVDEVPQGATVLTISGTELRRRLREGL-EIPEWFSFPEVVAELRRTYPPRH 389 (568)
T ss_pred HHHhCccccCceEEecceeEEEcCCCeEEecCcCCCCcceeccCHHHHHHHHHCCC-CCChhhcHHHHHHHHHHHhcccc
Confidence 334444688999999999888873 1123344567799999987654222 23322 25567
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH-cCC------eeeeCCccccc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET-LGA------GLINCDQLGHR 112 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~------~vi~~D~i~~~ 112 (212)
.+|++|.|+|.+||||||+++.|+. ++. .++|.|.+.+.
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~ 435 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKH 435 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHh
Confidence 7899999999999999999999984 553 77888877543
No 446
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.33 E-value=1.4e-06 Score=79.97 Aligned_cols=112 Identities=15% Similarity=0.103 Sum_probs=73.2
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCc----cccccccCCchh---------------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQ----LGHRAYDVGTRG--------------- 120 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~----i~~~~~~~~~~~--------------- 120 (212)
-+++.++..++|.-+-|.|+||||||||+|.|+|+ |......|. +++..|.|.+..
T Consensus 408 ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d 487 (604)
T COG4178 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSD 487 (604)
T ss_pred eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCCh
Confidence 34556788999999999999999999999999997 322222221 233444443211
Q ss_pred --HHHHHHHhCCcc----------C---CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHh
Q psy17138 121 --NQVVRELFGEDI----------A---LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIAR 176 (212)
Q Consensus 121 --~~~~~~~~g~~~----------~---~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~ 176 (212)
..+.....|..- + -+.|+.+|-.+++++++.|+ .+++-++.+++.....+.+.+++
T Consensus 488 ~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 488 AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 111111111110 1 13467788899999999988 56777888888888888777765
No 447
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.32 E-value=1.8e-06 Score=69.86 Aligned_cols=35 Identities=31% Similarity=0.303 Sum_probs=29.4
Q ss_pred EEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc
Q psy17138 79 IGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA 113 (212)
Q Consensus 79 igl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~ 113 (212)
|.|+|++||||||+++.|+ .+|+.+++++.+.++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~ 37 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAE 37 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHh
Confidence 6889999999999999997 5899999876554443
No 448
>PRK08118 topology modulation protein; Reviewed
Probab=98.32 E-value=5.3e-07 Score=70.58 Aligned_cols=34 Identities=38% Similarity=0.320 Sum_probs=29.7
Q ss_pred eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLG 110 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~ 110 (212)
..|.|+|++||||||+++.|+ .++.++++.|.+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~ 36 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALF 36 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence 468999999999999999998 5789988888654
No 449
>KOG0927|consensus
Probab=98.30 E-value=3.8e-07 Score=81.99 Aligned_cols=132 Identities=16% Similarity=0.173 Sum_probs=82.0
Q ss_pred CCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCee----------------------eeCCcccccc----ccC--CchhH
Q psy17138 70 PHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGL----------------------INCDQLGHRA----YDV--GTRGN 121 (212)
Q Consensus 70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~v----------------------i~~D~i~~~~----~~~--~~~~~ 121 (212)
.+-......++++||||+||||++|++.+.-.+. .+.|.-+-+. |.+ .....
T Consensus 410 ~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~ 489 (614)
T KOG0927|consen 410 NFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEM 489 (614)
T ss_pred hcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHH
Confidence 4567778889999999999999999998751111 0111111111 111 11234
Q ss_pred HHHHHHhCCccC--------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccc
Q psy17138 122 QVVRELFGEDIA--------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVL 191 (212)
Q Consensus 122 ~~~~~~~g~~~~--------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l 191 (212)
..++..||...- -++|+..|...+....+.|. +++++.+.++-...+.+.+.|.+. .+.+|++ +|.+
T Consensus 490 r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~v-SHDf 566 (614)
T KOG0927|consen 490 RSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLV-SHDF 566 (614)
T ss_pred HHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeee-echh
Confidence 566667775521 13566667777777778887 568888888888888888888774 3345555 6665
Q ss_pred cccccccccCeEEEE
Q psy17138 192 LSAKWQDQVHEIWVT 206 (212)
Q Consensus 192 ~e~~~~~~~d~v~~v 206 (212)
.-- ....+++|.|
T Consensus 567 rlI--~qVaeEi~~c 579 (614)
T KOG0927|consen 567 RLI--SQVAEEIWVC 579 (614)
T ss_pred hHH--HHHHHHhHhh
Confidence 531 2355666654
No 450
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.30 E-value=3.2e-07 Score=75.05 Aligned_cols=128 Identities=15% Similarity=0.085 Sum_probs=69.2
Q ss_pred CCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH------cCCeeeeCCccccccccCCchhHHHHHHHhCCccC----CC
Q psy17138 66 VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET------LGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIA----LP 135 (212)
Q Consensus 66 ~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~------lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~----~~ 135 (212)
++++.+..+.+.+++|+|||||||||+++.+.- .|+++. ++... + ...+.+...+|..-. .+
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vp-a~~~~---~----~~~~~il~~~~l~d~~~~~lS 91 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVP-CDSAD---I----PIVDCILARVGASDSQLKGVS 91 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcC-cccEE---E----eccceeEeeeccccchhcCcC
Confidence 455666677789999999999999999999763 354322 11100 0 011111222221100 01
Q ss_pred CCccchHhHHHHh--cCChH--HHHHH---HhhhhHHHHHHHH-HHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 136 DGSIDRKKLGAIV--FSNKD--EMNKL---NQAIWPLILAQVK-EEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 136 ~~~~~r~~l~~~v--f~~~~--~~~~~---~~i~~p~~~~~~~-~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
.++.++..++..+ ..+++ +++++ .+.+++....... +.+.+ .....+++.+|+ .+ +.++||++..+
T Consensus 92 ~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~--~~~~~vlisTH~-~e--l~~~~~~~~~i 165 (222)
T cd03285 92 TFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT--QIKCFCLFATHF-HE--LTALADEVPNV 165 (222)
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh--cCCCeEEEEech-HH--HHHHhhcCCCe
Confidence 2233455555454 45665 45666 5566766554322 22322 234578888995 33 45678776544
No 451
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.29 E-value=1e-06 Score=68.39 Aligned_cols=126 Identities=13% Similarity=0.070 Sum_probs=72.5
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc-CCe---eeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcC
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL-GAG---LINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFS 150 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l-g~~---vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~ 150 (212)
.+.+..|+|||||||||+++.+.-. +.. ....+.+....+.+..... ++.. -.. .+.|+.++..++..+..
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~i~~-~~~--lS~G~~~~~~la~~L~~ 94 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAE--LIFT-RLQ--LSGGEKELSALALILAL 94 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEE--Eehh-eee--ccccHHHHHHHHHHHHh
Confidence 3478999999999999999998631 100 0000000000000000000 0000 001 14556667777766643
Q ss_pred ----ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 151 ----NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 151 ----~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
+|. +++++...++|.....+.+.+.+.......+++.+|..... ..+|+++.+..
T Consensus 95 ~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~---~~~d~~~~l~~ 155 (162)
T cd03227 95 ASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELA---ELADKLIHIKK 155 (162)
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH---HhhhhEEEEEE
Confidence 344 55777888889888888777766542245777779987654 46798887765
No 452
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.29 E-value=6.8e-07 Score=69.97 Aligned_cols=43 Identities=37% Similarity=0.341 Sum_probs=35.3
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHH----cCC--eeeeCCccccccc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLET----LGA--GLINCDQLGHRAY 114 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~----lg~--~vi~~D~i~~~~~ 114 (212)
...+|.++.+||.|||||||++..|.. +|. .++|+|.+.|.+.
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~ 67 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN 67 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc
Confidence 356689999999999999999999974 354 5678998887764
No 453
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.28 E-value=1.1e-06 Score=68.46 Aligned_cols=30 Identities=37% Similarity=0.607 Sum_probs=27.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHcCCeeeeCC
Q psy17138 78 IIGLTGGIASGKSTIAKYLETLGAGLINCD 107 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~lg~~vi~~D 107 (212)
.|+|+|.+|.||||+++.|..+|+.+++..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLRELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHHhCCceeeHH
Confidence 689999999999999999999999887643
No 454
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.28 E-value=2e-06 Score=67.30 Aligned_cols=33 Identities=39% Similarity=0.452 Sum_probs=29.1
Q ss_pred eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL 109 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i 109 (212)
.-|.|+|+.||||||+.+.|+ .|+.+++|+|.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~ 36 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE 36 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHH
Confidence 457899999999999999998 589999999853
No 455
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.28 E-value=9.8e-07 Score=69.66 Aligned_cols=35 Identities=34% Similarity=0.308 Sum_probs=29.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc-CCeeeeCCcc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL-GAGLINCDQL 109 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l-g~~vi~~D~i 109 (212)
.|++++|+|+|||||||+++.|+++ +...+++|.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCccc
Confidence 3789999999999999999999974 6667777654
No 456
>KOG2702|consensus
Probab=98.26 E-value=3.2e-07 Score=74.63 Aligned_cols=136 Identities=14% Similarity=0.193 Sum_probs=69.7
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc---CCeeeeCCccc--cccccCCchhHHHHHHHhCCccCC-----CCCccch
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL---GAGLINCDQLG--HRAYDVGTRGNQVVRELFGEDIAL-----PDGSIDR 141 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l---g~~vi~~D~i~--~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~r 141 (212)
.+....++|+.|++|+||||++..+..- ...-+..+.+. .-+-+.+-..+...+..|..+-.. +...+|-
T Consensus 115 ~~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~ 194 (323)
T KOG2702|consen 115 TSNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDS 194 (323)
T ss_pred cccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCH
Confidence 3667889999999999999999999752 11111111111 111112222223333333221100 0011221
Q ss_pred HhHHHHhcCChHHHHH--HHhhhhHHHHHHHHHHHHhhc---CCCcEEEEEecccc--cccccc---ccCeEEEEEeCCC
Q psy17138 142 KKLGAIVFSNKDEMNK--LNQAIWPLILAQVKEEIARLS---ESHKVIVIEAAVLL--SAKWQD---QVHEIWVTFIPEQ 211 (212)
Q Consensus 142 ~~l~~~vf~~~~~~~~--~~~i~~p~~~~~~~~~i~~~~---~~~~~vvie~~~l~--e~~~~~---~~d~v~~v~~~~~ 211 (212)
..+ ++--.+++. ...+.-|.+.+.+.+....-. ...+++++|+.|++ +..|.+ ++|..|+++++-+
T Consensus 195 ~lf----l~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~ 270 (323)
T KOG2702|consen 195 NLF----LQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYE 270 (323)
T ss_pred HHH----HHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHH
Confidence 111 111112221 112344666666655543322 45789999999988 445765 6688999988643
No 457
>PRK13948 shikimate kinase; Provisional
Probab=98.26 E-value=1.5e-06 Score=69.00 Aligned_cols=39 Identities=28% Similarity=0.283 Sum_probs=33.7
Q ss_pred CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA 113 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~ 113 (212)
++..|.|+|.+||||||+++.|+ .+|.+++|+|.+.++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~ 48 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERV 48 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHH
Confidence 46789999999999999999998 5899999999765443
No 458
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.24 E-value=2.6e-06 Score=67.37 Aligned_cols=127 Identities=16% Similarity=0.185 Sum_probs=72.6
Q ss_pred EEEEecCCCCcHHHHHHHHHH-cCCe--eeeCCc-c--ccccccCCchh------HHH-HHHHhC---CccCCCCCccch
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-LGAG--LINCDQ-L--GHRAYDVGTRG------NQV-VRELFG---EDIALPDGSIDR 141 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-lg~~--vi~~D~-i--~~~~~~~~~~~------~~~-~~~~~g---~~~~~~~~~~~r 141 (212)
+.+|+|+||||||+++..|.- ++.. ....+. + .++...++... +.. ....+. .++ -+.|+..|
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~-LS~Ge~~r 102 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQI-LSGGEKSL 102 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCccc-CCHHHHHH
Confidence 889999999999999999973 3211 111010 0 01111111000 000 000000 011 13456667
Q ss_pred HhHHHHhc----CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEe
Q psy17138 142 KKLGAIVF----SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFI 208 (212)
Q Consensus 142 ~~l~~~vf----~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~ 208 (212)
..++..+. .+|+ +++++.+.+++.....+.+.+.+.......+++.+|.... ...+|+++.+.-
T Consensus 103 ~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~---~~~adrvi~i~~ 172 (178)
T cd03239 103 SALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEM---FENADKLIGVLF 172 (178)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH---HhhCCeEEEEEE
Confidence 77775542 4555 5577888899999998888887765333566666887643 247999988864
No 459
>PRK07261 topology modulation protein; Provisional
Probab=98.23 E-value=1.2e-06 Score=68.80 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=29.3
Q ss_pred EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccc
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGH 111 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~ 111 (212)
.|.|+|++||||||+++.|+. ++.++++.|.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 589999999999999999984 6888888887643
No 460
>PRK06762 hypothetical protein; Provisional
Probab=98.22 E-value=8.3e-07 Score=68.87 Aligned_cols=38 Identities=37% Similarity=0.477 Sum_probs=30.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-c--CCeeeeCCcccccc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-L--GAGLINCDQLGHRA 113 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-l--g~~vi~~D~i~~~~ 113 (212)
+.+|+|+|++||||||+++.|+. + ++.+++.|.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l 42 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM 42 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh
Confidence 57899999999999999999975 4 46667777665543
No 461
>PRK13949 shikimate kinase; Provisional
Probab=98.22 E-value=1.5e-06 Score=68.20 Aligned_cols=35 Identities=34% Similarity=0.414 Sum_probs=30.5
Q ss_pred eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH 111 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~ 111 (212)
..|.|+|++||||||+++.|+ .++++++++|.+.+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~ 37 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIE 37 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHH
Confidence 358999999999999999998 47999999997643
No 462
>PLN02199 shikimate kinase
Probab=98.21 E-value=8.7e-07 Score=75.03 Aligned_cols=53 Identities=28% Similarity=0.409 Sum_probs=40.9
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccccCCchhHHHHHHHhCC
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDVGTRGNQVVRELFGE 130 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~ 130 (212)
+..|.|+|.+||||||++++|+. +|++++|+|.+.++.+. ......+...+|.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~--G~sI~eIf~~~GE 155 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN--GTSVAEIFVHHGE 155 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc--CCCHHHHHHHhCH
Confidence 66899999999999999999985 89999999988777542 1233444555554
No 463
>PRK03839 putative kinase; Provisional
Probab=98.21 E-value=1.1e-06 Score=69.16 Aligned_cols=33 Identities=33% Similarity=0.575 Sum_probs=29.3
Q ss_pred EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccc
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLG 110 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~ 110 (212)
.|.|+|++||||||+++.|+. +++++++.|.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~ 35 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFA 35 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhh
Confidence 589999999999999999985 799999988654
No 464
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.19 E-value=7.7e-06 Score=65.70 Aligned_cols=69 Identities=6% Similarity=0.055 Sum_probs=49.3
Q ss_pred CccchHhHHHHh----cCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-C--CCcEEEEEeccccccccccccCeEEEEE
Q psy17138 137 GSIDRKKLGAIV----FSNKD--EMNKLNQAIWPLILAQVKEEIARLS-E--SHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 137 ~~~~r~~l~~~v----f~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~--~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
|+.+|..++..+ .++|+ +++++.+.+++.....+.+.+.+.. . +...+++.+|.+.+.. .+|+|-++.
T Consensus 113 G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~---~~d~v~~~~ 189 (198)
T cd03276 113 GERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLA---SSDDVKVFR 189 (198)
T ss_pred hHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccc---cccceeEEE
Confidence 455566666555 46776 6688899999999999988887754 3 3457888889998752 358887665
Q ss_pred e
Q psy17138 208 I 208 (212)
Q Consensus 208 ~ 208 (212)
.
T Consensus 190 ~ 190 (198)
T cd03276 190 M 190 (198)
T ss_pred e
Confidence 4
No 465
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.18 E-value=2.1e-06 Score=69.37 Aligned_cols=34 Identities=24% Similarity=0.012 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.++++++....+.+++|+|||||||||+++.+..
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4555677777889999999999999999999975
No 466
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.18 E-value=2.7e-06 Score=75.43 Aligned_cols=133 Identities=18% Similarity=0.193 Sum_probs=79.2
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc-----CCee--eeCCcccc------------ccccCC----------------
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL-----GAGL--INCDQLGH------------RAYDVG---------------- 117 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~v--i~~D~i~~------------~~~~~~---------------- 117 (212)
++.|.++||+|+||-||||.+++|++- |-.- .++|.+-+ .++...
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 677999999999999999999999963 2110 12222200 000000
Q ss_pred --------------chhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138 118 --------------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI 174 (212)
Q Consensus 118 --------------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i 174 (212)
...++++++.++..-. -+.|.++|..++..+.++.+ .++++...++-.-+-.+.+.|
T Consensus 177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~I 256 (591)
T COG1245 177 VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVI 256 (591)
T ss_pred hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHH
Confidence 0123444444443211 14578899999887777665 455555555544444555566
Q ss_pred HhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 175 ARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 175 ~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++....++|++-.|.|.-.+| +.|.+-+++
T Consensus 257 rel~~~~k~ViVVEHDLavLD~--lsD~vhI~Y 287 (591)
T COG1245 257 RELAEDGKYVIVVEHDLAVLDY--LSDFVHILY 287 (591)
T ss_pred HHHhccCCeEEEEechHHHHHH--hhheeEEEe
Confidence 6665446777777888864333 567766654
No 467
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.16 E-value=1.8e-06 Score=66.72 Aligned_cols=32 Identities=50% Similarity=0.561 Sum_probs=27.9
Q ss_pred EEEecCCCCcHHHHHHHHHH-cCCeeeeCCccc
Q psy17138 79 IGLTGGIASGKSTIAKYLET-LGAGLINCDQLG 110 (212)
Q Consensus 79 igl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~ 110 (212)
|.|+|++||||||+++.|++ ++..+++.|.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCcccc
Confidence 46899999999999999984 688899988764
No 468
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.15 E-value=2.6e-06 Score=67.57 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=25.7
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc-CCeeeeCC
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL-GAGLINCD 107 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l-g~~vi~~D 107 (212)
|.+++|+|||||||||++++|+++ +..++..|
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~ 34 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAH 34 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcC
Confidence 678999999999999999999876 34444433
No 469
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.14 E-value=2.3e-06 Score=68.65 Aligned_cols=40 Identities=33% Similarity=0.353 Sum_probs=32.4
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc------CCeeeeCCccccc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL------GAGLINCDQLGHR 112 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l------g~~vi~~D~i~~~ 112 (212)
..+|.+++|+|++||||||+++.|+++ +..++++|.+.+.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~ 66 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG 66 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh
Confidence 456899999999999999999999863 3567788876543
No 470
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.14 E-value=2.5e-06 Score=65.01 Aligned_cols=34 Identities=47% Similarity=0.567 Sum_probs=29.2
Q ss_pred EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccc
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGH 111 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~ 111 (212)
++.|+|++||||||+++.|.. ++..+++.|.+.+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~ 35 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHP 35 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCccccc
Confidence 478999999999999999985 6888899887654
No 471
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.13 E-value=1.6e-05 Score=75.46 Aligned_cols=36 Identities=22% Similarity=0.443 Sum_probs=31.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR 112 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~ 112 (212)
.+|+|.||+||||||+++.|++ +|+.++++..+.+.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~ 38 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRA 38 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHH
Confidence 4799999999999999999984 79999998776544
No 472
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.12 E-value=1.8e-05 Score=74.51 Aligned_cols=135 Identities=11% Similarity=0.045 Sum_probs=71.9
Q ss_pred CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc----ccCC----c-hhHHHHHHHhCCccCCCCCccchHhH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA----YDVG----T-RGNQVVRELFGEDIALPDGSIDRKKL 144 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~----~~~~----~-~~~~~~~~~~g~~~~~~~~~~~r~~l 144 (212)
+..+|+|.||+||||||+++.|+ .+|+++++++.+.+.+ ...+ . ..+......+........-.++-..+
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDV 520 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEc
Confidence 35689999999999999999998 5899999988765443 1110 0 01111111111111000000000001
Q ss_pred HHHhcCChHHHHHHHh-hhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCCC
Q psy17138 145 GAIVFSNKDEMNKLNQ-AIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212 (212)
Q Consensus 145 ~~~vf~~~~~~~~~~~-i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~~ 212 (212)
.. ...+++.-..... ..+|.+++.+....++... ..-+|+|+.++--. ..-.+|..+|++++.++
T Consensus 521 ~~-~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~-~~~~v~eGRdigtv-v~p~a~~kifl~a~~~~ 586 (661)
T PRK11860 521 TD-AIRTEAAGMGASRVSALPAVRAALLALQRSFRR-LPGLVADGRDMGTV-IFPDAALKVFLTASAEA 586 (661)
T ss_pred hh-hhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhh-CCCEEEECCCCccE-ECCCCCeEEEEECChhH
Confidence 00 0111111111111 2458888888777766542 23478999886432 22347999999998764
No 473
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.12 E-value=3.6e-06 Score=66.62 Aligned_cols=39 Identities=31% Similarity=0.317 Sum_probs=31.4
Q ss_pred EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccccC
Q psy17138 78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAYDV 116 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~~~ 116 (212)
.|.|+|+|||||||+++.|+ .++.++++.+.+-+.....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~ 41 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAE 41 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhcc
Confidence 57899999999999999997 5788999877665544433
No 474
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.11 E-value=2.4e-06 Score=65.08 Aligned_cols=36 Identities=31% Similarity=0.506 Sum_probs=31.0
Q ss_pred EEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccc
Q psy17138 79 IGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAY 114 (212)
Q Consensus 79 igl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~ 114 (212)
|.|+|++||||||+++.|+ .+|+.++++|.+.+..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~ 38 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRA 38 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHc
Confidence 7899999999999999998 67999999987655544
No 475
>PRK08356 hypothetical protein; Provisional
Probab=98.11 E-value=4.5e-06 Score=66.71 Aligned_cols=33 Identities=39% Similarity=0.765 Sum_probs=29.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQ 108 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~ 108 (212)
..+|+|+||+||||||+++.|...|+.++.+..
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~~g~~~is~~~ 37 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEEKGFCRVSCSD 37 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHCCCcEEeCCC
Confidence 467999999999999999999988988887654
No 476
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.10 E-value=4.2e-06 Score=65.81 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=28.6
Q ss_pred EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138 78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH 111 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~ 111 (212)
+|.|+|++||||||+++.|+ .+|+.+++++.+.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr 35 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLR 35 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHH
Confidence 47899999999999999997 58999999755433
No 477
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.10 E-value=2.2e-06 Score=66.30 Aligned_cols=39 Identities=44% Similarity=0.572 Sum_probs=30.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH-c---C--CeeeeCCcccccc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET-L---G--AGLINCDQLGHRA 113 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~-l---g--~~vi~~D~i~~~~ 113 (212)
+|.+|.|+|.+||||||+++.|.. | | ..++|+|.+.+.+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 588999999999999999999984 2 4 4456777666543
No 478
>PRK14530 adenylate kinase; Provisional
Probab=98.10 E-value=2.8e-06 Score=68.97 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=29.9
Q ss_pred CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH 111 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~ 111 (212)
+..|.|+|++||||||+++.|+ .+|+.+++.+.+.+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr 39 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALR 39 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHH
Confidence 3468999999999999999997 57999888765443
No 479
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.09 E-value=3.7e-06 Score=54.79 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
|.+..|+|+|||||||++.++.-+
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 558999999999999999999854
No 480
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.08 E-value=1e-05 Score=67.22 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=57.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc----C--CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL----G--AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAI 147 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l----g--~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~ 147 (212)
.+..+|||+||+|+|||||...|... | ..++--|. .... -|..++- ||-.+. .
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDP--------SSp~-------tGGAlLG-----DRiRM~-~ 85 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDP--------SSPF-------TGGALLG-----DRIRMQ-E 85 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-G--------GGGC-------C---SS-------GGGCH-H
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECC--------CCCC-------CCCcccc-----cHHHhc-C
Confidence 45789999999999999999998742 2 23333332 2110 1222211 222221 2
Q ss_pred hcCChHHH--HHH----HhhhhHHHHHHHHHHHHhhcCCCcEEEEEecccc--ccccccccCeEEEEEeCC
Q psy17138 148 VFSNKDEM--NKL----NQAIWPLILAQVKEEIARLSESHKVIVIEAAVLL--SAKWQDQVHEIWVTFIPE 210 (212)
Q Consensus 148 vf~~~~~~--~~~----~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~--e~~~~~~~d~v~~v~~~~ 210 (212)
...||..+ ... ...+.+...+ ....+.. .+.++|++|+--.= |.++.+++|.+++|-.|-
T Consensus 86 ~~~d~~vfIRS~atRG~lGGls~~t~~-~v~ll~a--aG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg 153 (266)
T PF03308_consen 86 LSRDPGVFIRSMATRGSLGGLSRATRD-AVRLLDA--AGFDVIIIETVGVGQSEVDIADMADTVVLVLVPG 153 (266)
T ss_dssp HHTSTTEEEEEE---SSHHHHHHHHHH-HHHHHHH--TT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESS
T ss_pred cCCCCCEEEeecCcCCCCCCccHhHHH-HHHHHHH--cCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCC
Confidence 33333310 000 0112222222 2222332 57899999998755 455678999999998874
No 481
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.07 E-value=2.4e-06 Score=64.29 Aligned_cols=33 Identities=48% Similarity=0.586 Sum_probs=27.9
Q ss_pred EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccc
Q psy17138 78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLG 110 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~ 110 (212)
+|.+.|++||||||+++.|. .+++.+++.|.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~ 34 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIR 34 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHH
Confidence 57899999999999999998 6788888877543
No 482
>PRK14527 adenylate kinase; Provisional
Probab=98.07 E-value=5.4e-06 Score=66.00 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=32.2
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH 111 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~ 111 (212)
..++.+|.++|++||||||+++.|+ .+|+.+++.+.+.+
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r 42 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILR 42 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3468899999999999999999997 57888887765543
No 483
>KOG3347|consensus
Probab=98.07 E-value=1.5e-05 Score=60.82 Aligned_cols=36 Identities=33% Similarity=0.336 Sum_probs=29.3
Q ss_pred eEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR 112 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~ 112 (212)
.-|-|+|.+|+||||++..|+. +|+.+++...++++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkE 44 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKE 44 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhh
Confidence 3478899999999999999985 68888886655544
No 484
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.07 E-value=2.6e-06 Score=73.06 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=34.5
Q ss_pred CCCCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138 70 PHLSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL 109 (212)
Q Consensus 70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i 109 (212)
...+.++..|+|+|++||||||+++.|+ .+|+++++.|..
T Consensus 127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~ 167 (309)
T PRK08154 127 GRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNRE 167 (309)
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHH
Confidence 4457778899999999999999999997 579999988743
No 485
>PRK13947 shikimate kinase; Provisional
Probab=98.06 E-value=4.2e-06 Score=65.12 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=31.1
Q ss_pred EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc
Q psy17138 78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA 113 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~ 113 (212)
-|.|+|++||||||+++.|+ .+|+++++.|.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~ 39 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM 39 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh
Confidence 48999999999999999997 5899999999765443
No 486
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.05 E-value=2.8e-06 Score=68.35 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=22.2
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+.+++|+|||||||||++|.+++
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 369999999999999999999985
No 487
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.04 E-value=2.1e-06 Score=76.97 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHH
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAK 94 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~ 94 (212)
.+++++++...+|++++|+|||||||||+++
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 5678889999999999999999999999999
No 488
>PRK14532 adenylate kinase; Provisional
Probab=98.04 E-value=6.5e-06 Score=65.20 Aligned_cols=35 Identities=29% Similarity=0.204 Sum_probs=29.4
Q ss_pred EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccc
Q psy17138 78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHR 112 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~ 112 (212)
.|.|+|++||||||+++.|+ .+|+.++++|.+-++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHH
Confidence 37889999999999999997 579999998655443
No 489
>KOG3354|consensus
Probab=98.03 E-value=5.2e-06 Score=63.70 Aligned_cols=36 Identities=47% Similarity=0.716 Sum_probs=31.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL 109 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i 109 (212)
+-.+.+.+.|.+||||||++++|. .||+.++++|.+
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~ 46 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDL 46 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccC
Confidence 346789999999999999999997 689999999874
No 490
>PRK00625 shikimate kinase; Provisional
Probab=98.03 E-value=4.3e-06 Score=65.87 Aligned_cols=34 Identities=29% Similarity=0.258 Sum_probs=29.9
Q ss_pred EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138 78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH 111 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~ 111 (212)
.|.|+|.+||||||+++.|+ .+|++++|+|.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~ 36 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIV 36 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHH
Confidence 48899999999999999997 47999999997644
No 491
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.02 E-value=5.2e-06 Score=66.55 Aligned_cols=26 Identities=35% Similarity=0.345 Sum_probs=24.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+|.+++|+|||||||||+++.|.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999999875
No 492
>PRK02496 adk adenylate kinase; Provisional
Probab=98.01 E-value=6.7e-06 Score=64.92 Aligned_cols=37 Identities=24% Similarity=0.179 Sum_probs=30.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccccc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRA 113 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~ 113 (212)
..+.|+|++||||||+++.|+. +|+++++.+.+.++.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~ 39 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQA 39 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHH
Confidence 5689999999999999999985 799888876554443
No 493
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.01 E-value=8.8e-06 Score=64.40 Aligned_cols=36 Identities=33% Similarity=0.291 Sum_probs=30.4
Q ss_pred EEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccc
Q psy17138 79 IGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAY 114 (212)
Q Consensus 79 igl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~ 114 (212)
|.|+|++||||||+++.|+. +|+.+++.|.+.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~ 38 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEI 38 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHH
Confidence 78999999999999999985 6999999877655443
No 494
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.00 E-value=1.1e-05 Score=61.34 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=53.0
Q ss_pred ecCCCCcHHHHHHHHH-HcCCeeeeCCccccccccCCchhHHHHHH-HhCCccCCCCCccchHhHHHHhcCChHHHHHHH
Q psy17138 82 TGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAYDVGTRGNQVVRE-LFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLN 159 (212)
Q Consensus 82 ~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~~~~ 159 (212)
.|.+||||||++..|+ .||+.++++|.+ -| .+.+.+ .-|.++-+.+...--..++...++-...-. ..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdl-----Hp----~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~-~~ 70 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDL-----HP----PANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNK-HV 70 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceeccccc-----CC----HHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCC-ce
Confidence 4899999999999998 689999999963 11 122222 125554333322112233333333211100 01
Q ss_pred hhhhHHHHHHHHHHHHhhcCCCcEEEEEec
Q psy17138 160 QAIWPLILAQVKEEIARLSESHKVIVIEAA 189 (212)
Q Consensus 160 ~i~~p~~~~~~~~~i~~~~~~~~~vvie~~ 189 (212)
-+......+.-+++++....+-.+|++++.
T Consensus 71 vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~ 100 (161)
T COG3265 71 VIACSALKRSYRDLLREANPGLRFVYLDGD 100 (161)
T ss_pred EEecHHHHHHHHHHHhccCCCeEEEEecCC
Confidence 123455666667777765444556666554
No 495
>KOG0064|consensus
Probab=98.00 E-value=1.7e-05 Score=71.54 Aligned_cols=108 Identities=14% Similarity=0.143 Sum_probs=65.0
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CC---------------eeeeCCccccccccCCch---------
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GA---------------GLINCDQLGHRAYDVGTR--------- 119 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~---------------~vi~~D~i~~~~~~~~~~--------- 119 (212)
.+++...|.-+-|+||||||||+|.|+|.++ |. |+....-+..++..|...
T Consensus 501 Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~ 580 (728)
T KOG0064|consen 501 LTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYT 580 (728)
T ss_pred eeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCC
Confidence 5678889999999999999999999999997 11 111111111122222210
Q ss_pred -----------hHHHHHHHhCC-ccC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHh
Q psy17138 120 -----------GNQVVRELFGE-DIA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIAR 176 (212)
Q Consensus 120 -----------~~~~~~~~~g~-~~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~ 176 (212)
..+.++++-|. +.. -+.|..+|..+++++|+-|. ++++-++.+.+.+...+.+..+.
T Consensus 581 d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~ 657 (728)
T KOG0064|consen 581 DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD 657 (728)
T ss_pred HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh
Confidence 01122222221 110 13577789999989888886 66666777777776666555544
No 496
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.00 E-value=4.9e-06 Score=65.34 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
|.+++|+|+|||||||+++.|+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 497
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.99 E-value=1.1e-05 Score=66.41 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=32.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA 113 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~ 113 (212)
+..|.|+||+||||||+++.|+ .+|+++++.+.+-++.
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~ 44 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREE 44 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHH
Confidence 4569999999999999999998 4799999988765543
No 498
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.98 E-value=6e-06 Score=64.67 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=30.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc----C--CeeeeCCcccc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL----G--AGLINCDQLGH 111 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l----g--~~vi~~D~i~~ 111 (212)
.+|.+++|+|++||||||+++.|++. | ..++++|.+.+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 46889999999999999999999854 2 45678886543
No 499
>PRK14531 adenylate kinase; Provisional
Probab=97.97 E-value=1.2e-05 Score=63.71 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=28.8
Q ss_pred eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLG 110 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~ 110 (212)
..|.++|++||||||+++.|+ .+|+.+++++.+-
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHH
Confidence 468999999999999999996 6899999875443
No 500
>KOG0635|consensus
Probab=97.97 E-value=1.2e-05 Score=61.50 Aligned_cols=42 Identities=31% Similarity=0.294 Sum_probs=34.4
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc------CCeeeeCCcccccc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL------GAGLINCDQLGHRA 113 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l------g~~vi~~D~i~~~~ 113 (212)
...+|.+|.|+|-|||||||++-.|..+ -...+|+|.+.|.+
T Consensus 27 ~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGL 74 (207)
T KOG0635|consen 27 LKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGL 74 (207)
T ss_pred hcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccc
Confidence 3567999999999999999999999753 24567899887765
Done!