Query psy17138
Match_columns 212
No_of_seqs 274 out of 2181
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 22:51:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f6r_A COA synthase, bifunctio 100.0 1.6E-34 5.3E-39 242.7 13.8 198 13-211 13-211 (281)
2 4i1u_A Dephospho-COA kinase; s 100.0 3.2E-31 1.1E-35 213.4 10.4 137 73-211 6-143 (210)
3 2grj_A Dephospho-COA kinase; T 99.9 4.4E-25 1.5E-29 175.6 11.0 132 73-211 9-141 (192)
4 1jjv_A Dephospho-COA kinase; P 99.9 9.7E-24 3.3E-28 168.2 12.8 134 76-211 2-135 (206)
5 2if2_A Dephospho-COA kinase; a 99.9 6.7E-22 2.3E-26 157.2 9.4 134 77-211 2-135 (204)
6 1vht_A Dephospho-COA kinase; s 99.8 2.4E-20 8.1E-25 149.9 13.9 135 75-211 3-137 (218)
7 1uf9_A TT1252 protein; P-loop, 99.8 5.1E-19 1.8E-23 139.8 9.5 131 73-211 5-136 (203)
8 3tui_C Methionine import ATP-b 99.5 8.2E-16 2.8E-20 132.9 1.4 159 47-207 25-238 (366)
9 3fvq_A Fe(3+) IONS import ATP- 99.5 3.6E-15 1.2E-19 128.6 2.3 154 48-207 6-213 (359)
10 3gfo_A Cobalt import ATP-bindi 99.5 4.8E-15 1.7E-19 123.7 2.8 155 48-207 9-218 (275)
11 4g1u_C Hemin import ATP-bindin 99.5 3.1E-15 1.1E-19 124.3 0.3 154 48-207 13-222 (266)
12 3rlf_A Maltose/maltodextrin im 99.5 3.5E-15 1.2E-19 129.6 0.1 154 48-207 5-208 (381)
13 1vpl_A ABC transporter, ATP-bi 99.5 9.8E-15 3.3E-19 120.6 1.8 159 43-207 12-220 (256)
14 1g6h_A High-affinity branched- 99.5 2.9E-14 9.8E-19 117.8 4.1 155 47-207 8-227 (257)
15 3tif_A Uncharacterized ABC tra 99.5 8.8E-15 3E-19 119.4 0.9 156 49-207 4-219 (235)
16 2pcj_A ABC transporter, lipopr 99.4 1.1E-14 3.9E-19 117.9 1.4 152 49-207 7-213 (224)
17 2olj_A Amino acid ABC transpor 99.4 1.5E-14 5.3E-19 119.9 1.9 155 47-207 25-233 (263)
18 1v43_A Sugar-binding transport 99.4 2.6E-14 8.9E-19 123.9 3.3 155 47-207 12-216 (372)
19 1z47_A CYSA, putative ABC-tran 99.4 2E-14 6.8E-19 123.9 2.2 159 44-207 12-220 (355)
20 2it1_A 362AA long hypothetical 99.4 2.8E-14 9.6E-19 123.3 3.2 154 48-207 5-208 (362)
21 2yyz_A Sugar ABC transporter, 99.4 1.7E-14 5.7E-19 124.6 1.4 154 48-207 5-208 (359)
22 1b0u_A Histidine permease; ABC 99.4 1.1E-14 3.6E-19 120.8 -0.0 154 48-207 8-227 (262)
23 3d31_A Sulfate/molybdate ABC t 99.4 2.8E-14 9.7E-19 122.7 1.4 152 49-207 4-202 (348)
24 1g29_1 MALK, maltose transport 99.4 3E-14 1E-18 123.6 1.1 154 48-207 5-214 (372)
25 3ake_A Cytidylate kinase; CMP 99.4 1.9E-13 6.6E-18 107.9 5.7 130 78-211 4-147 (208)
26 2onk_A Molybdate/tungstate ABC 99.4 4.8E-14 1.7E-18 115.4 1.7 150 49-207 4-201 (240)
27 1oxx_K GLCV, glucose, ABC tran 99.4 2.2E-14 7.6E-19 123.6 -0.5 154 48-207 5-215 (353)
28 1ji0_A ABC transporter; ATP bi 99.4 2.4E-14 8.2E-19 117.1 -0.5 154 48-207 8-213 (240)
29 2ihy_A ABC transporter, ATP-bi 99.4 4.4E-14 1.5E-18 118.1 0.7 155 47-207 22-237 (279)
30 2nq2_C Hypothetical ABC transp 99.4 6.2E-14 2.1E-18 115.6 1.4 154 49-207 7-203 (253)
31 2d2e_A SUFC protein; ABC-ATPas 99.4 2.8E-13 9.6E-18 111.4 4.7 153 49-207 6-218 (250)
32 1uj2_A Uridine-cytidine kinase 99.4 2.3E-13 7.8E-18 111.6 4.1 118 73-211 19-162 (252)
33 1rz3_A Hypothetical protein rb 99.4 9.5E-14 3.2E-18 110.2 1.6 126 73-212 19-156 (201)
34 2yz2_A Putative ABC transporte 99.4 2.7E-13 9.3E-18 112.5 4.2 141 65-207 22-212 (266)
35 2zu0_C Probable ATP-dependent 99.4 2.1E-13 7.3E-18 113.2 3.3 155 47-207 21-239 (267)
36 2ff7_A Alpha-hemolysin translo 99.4 1.7E-13 5.9E-18 112.5 2.7 156 46-207 7-217 (247)
37 2qt1_A Nicotinamide riboside k 99.3 1.6E-12 5.4E-17 103.2 7.6 119 72-211 17-141 (207)
38 1sgw_A Putative ABC transporte 99.3 1.3E-14 4.3E-19 117.0 -4.9 157 47-210 11-210 (214)
39 2ghi_A Transport protein; mult 99.3 3.5E-13 1.2E-17 111.5 3.1 156 47-207 18-227 (260)
40 2qi9_C Vitamin B12 import ATP- 99.3 2.1E-13 7.3E-18 112.2 1.6 141 65-207 15-207 (249)
41 3gd7_A Fusion complex of cysti 99.3 6.3E-13 2.1E-17 115.9 4.4 156 46-207 19-227 (390)
42 1mv5_A LMRA, multidrug resista 99.3 9.2E-14 3.2E-18 113.8 -1.0 152 49-207 4-211 (243)
43 1cke_A CK, MSSA, protein (cyti 99.3 7.3E-13 2.5E-17 106.2 3.1 133 76-211 5-152 (227)
44 2ixe_A Antigen peptide transpo 99.3 7E-13 2.4E-17 110.3 2.6 157 47-207 17-230 (271)
45 2pjz_A Hypothetical protein ST 99.3 7.5E-13 2.6E-17 109.7 2.6 137 65-207 20-200 (263)
46 3nh6_A ATP-binding cassette SU 99.3 4.1E-13 1.4E-17 113.6 0.0 155 46-207 53-262 (306)
47 3ozx_A RNAse L inhibitor; ATP 99.3 1.2E-12 4E-17 118.6 2.7 137 70-208 288-461 (538)
48 1sq5_A Pantothenate kinase; P- 99.3 1.2E-12 4.1E-17 110.6 2.3 126 73-211 77-226 (308)
49 2cbz_A Multidrug resistance-as 99.2 1.7E-12 5.8E-17 105.9 2.7 154 48-207 5-202 (237)
50 3b5x_A Lipid A export ATP-bind 99.2 9.4E-12 3.2E-16 113.7 7.1 155 47-207 342-552 (582)
51 1q3t_A Cytidylate kinase; nucl 99.2 8.5E-12 2.9E-16 101.2 5.0 131 72-211 12-164 (236)
52 2pze_A Cystic fibrosis transme 99.2 1.4E-12 4.7E-17 105.9 0.3 154 48-207 8-203 (229)
53 3tqc_A Pantothenate kinase; bi 99.2 8.3E-13 2.8E-17 112.4 -1.2 126 73-211 89-238 (321)
54 3j16_B RLI1P; ribosome recycli 99.2 1.3E-11 4.3E-16 113.3 5.9 134 72-207 99-295 (608)
55 3ozx_A RNAse L inhibitor; ATP 99.2 1.5E-11 5E-16 111.4 5.7 132 73-207 22-211 (538)
56 2h92_A Cytidylate kinase; ross 99.2 1.7E-11 5.8E-16 97.8 5.4 128 76-211 3-147 (219)
57 3asz_A Uridine kinase; cytidin 99.2 2.5E-12 8.7E-17 102.1 0.5 128 73-211 3-136 (211)
58 2jeo_A Uridine-cytidine kinase 99.2 6.9E-12 2.3E-16 102.3 3.1 39 64-102 13-52 (245)
59 1yqt_A RNAse L inhibitor; ATP- 99.2 3.2E-11 1.1E-15 109.3 7.5 140 65-207 37-232 (538)
60 3qf4_B Uncharacterized ABC tra 99.2 2.4E-12 8.2E-17 118.0 -0.3 155 46-207 354-563 (598)
61 3bk7_A ABC transporter ATP-bin 99.2 8.9E-12 3E-16 114.3 3.4 140 65-207 107-302 (607)
62 3bk7_A ABC transporter ATP-bin 99.2 1.2E-11 4.1E-16 113.5 3.6 137 69-207 375-546 (607)
63 2bbs_A Cystic fibrosis transme 99.1 3.5E-12 1.2E-16 107.1 -0.1 140 64-207 52-232 (290)
64 3qf4_A ABC transporter, ATP-bi 99.1 1.9E-12 6.5E-17 118.4 -2.3 155 47-207 342-551 (587)
65 4e22_A Cytidylate kinase; P-lo 99.1 4E-11 1.4E-15 98.4 5.5 137 72-211 23-174 (252)
66 3b60_A Lipid A export ATP-bind 99.1 1.5E-11 5.1E-16 112.3 2.6 155 47-207 342-552 (582)
67 4a82_A Cystic fibrosis transme 99.1 1.7E-11 5.7E-16 112.0 2.8 155 47-207 340-549 (578)
68 2j41_A Guanylate kinase; GMP, 99.1 1.6E-11 5.6E-16 96.7 2.4 111 73-210 3-127 (207)
69 3j16_B RLI1P; ribosome recycli 99.1 2.6E-11 9E-16 111.2 4.1 140 66-207 363-542 (608)
70 1yqt_A RNAse L inhibitor; ATP- 99.1 1.5E-11 5E-16 111.5 1.1 137 69-207 305-476 (538)
71 1a7j_A Phosphoribulokinase; tr 99.1 1.7E-11 5.9E-16 102.8 1.4 38 74-111 3-46 (290)
72 2yl4_A ATP-binding cassette SU 99.1 1.1E-11 3.8E-16 113.5 0.2 156 47-207 342-555 (595)
73 1ukz_A Uridylate kinase; trans 99.1 1.6E-10 5.3E-15 91.1 5.7 42 72-113 11-53 (203)
74 3g5u_A MCG1178, multidrug resi 99.0 2.4E-11 8.3E-16 119.8 0.4 156 47-207 1031-1243(1284)
75 1tev_A UMP-CMP kinase; ploop, 99.0 3.9E-10 1.3E-14 87.6 5.9 40 75-114 2-42 (196)
76 2iw3_A Elongation factor 3A; a 99.0 1.7E-10 5.7E-15 110.4 3.5 138 65-207 450-619 (986)
77 1qf9_A UMP/CMP kinase, protein 99.0 7.7E-10 2.6E-14 85.8 6.2 40 75-114 5-45 (194)
78 4eun_A Thermoresistant glucoki 99.0 5.1E-10 1.7E-14 88.3 5.1 37 73-109 26-63 (200)
79 3aez_A Pantothenate kinase; tr 99.0 6.3E-10 2.1E-14 94.2 5.8 33 179-211 193-229 (312)
80 3dl0_A Adenylate kinase; phosp 98.9 1.2E-09 4E-14 86.9 6.6 52 78-129 2-54 (216)
81 4gp7_A Metallophosphoesterase; 98.9 2.7E-11 9.1E-16 93.7 -3.3 125 69-194 2-162 (171)
82 4f4c_A Multidrug resistance pr 98.9 2.5E-10 8.7E-15 112.8 2.6 156 47-207 416-626 (1321)
83 3c8u_A Fructokinase; YP_612366 98.9 7.1E-11 2.4E-15 93.9 -1.2 27 73-99 19-45 (208)
84 4f4c_A Multidrug resistance pr 98.9 2.6E-11 9E-16 119.8 -5.0 157 46-207 1076-1289(1321)
85 3do8_A Phosphopantetheine aden 98.9 4.7E-10 1.6E-14 85.1 3.0 53 1-59 89-141 (148)
86 3fb4_A Adenylate kinase; psych 98.9 5.8E-10 2E-14 88.6 3.7 41 78-118 2-43 (216)
87 2bwj_A Adenylate kinase 5; pho 98.9 1.2E-09 4.3E-14 85.2 5.5 37 76-112 12-49 (199)
88 3ux8_A Excinuclease ABC, A sub 98.9 3E-10 1E-14 105.3 1.9 68 136-206 205-276 (670)
89 3g5u_A MCG1178, multidrug resi 98.9 3E-11 1E-15 119.1 -5.3 156 47-207 388-598 (1284)
90 2pt5_A Shikimate kinase, SK; a 98.9 1E-09 3.5E-14 83.6 4.2 34 78-111 2-36 (168)
91 3vaa_A Shikimate kinase, SK; s 98.9 2.9E-09 9.8E-14 83.9 6.8 45 64-108 13-58 (199)
92 2ehv_A Hypothetical protein PH 98.8 4.9E-09 1.7E-13 84.5 7.0 26 72-97 26-51 (251)
93 2iw3_A Elongation factor 3A; a 98.8 4.5E-10 1.5E-14 107.4 0.4 68 135-207 903-972 (986)
94 3ux8_A Excinuclease ABC, A sub 98.8 1E-09 3.5E-14 101.7 2.7 68 136-206 546-618 (670)
95 2pbr_A DTMP kinase, thymidylat 98.8 1.1E-08 3.7E-13 79.4 7.9 31 78-108 2-36 (195)
96 3tlx_A Adenylate kinase 2; str 98.8 4.6E-09 1.6E-13 85.6 5.8 45 75-119 28-73 (243)
97 3r20_A Cytidylate kinase; stru 98.8 1.4E-08 4.9E-13 82.4 8.4 137 73-211 6-157 (233)
98 2c95_A Adenylate kinase 1; tra 98.8 9.8E-09 3.4E-13 79.9 6.6 38 75-112 8-46 (196)
99 3t61_A Gluconokinase; PSI-biol 98.7 4E-09 1.4E-13 83.0 3.2 35 75-109 17-52 (202)
100 1y63_A LMAJ004144AAA protein; 98.7 7.2E-09 2.5E-13 80.6 2.8 44 69-112 3-48 (184)
101 1tq4_A IIGP1, interferon-induc 98.6 1.5E-08 5.2E-13 88.8 4.4 126 78-203 71-247 (413)
102 1knq_A Gluconate kinase; ALFA/ 98.6 3E-08 1E-12 76.0 5.4 37 74-110 6-43 (175)
103 1z6g_A Guanylate kinase; struc 98.6 1.5E-08 5E-13 81.2 2.9 36 64-99 11-46 (218)
104 1kag_A SKI, shikimate kinase I 98.6 1.7E-08 5.8E-13 77.1 3.1 35 76-110 4-39 (173)
105 1zuh_A Shikimate kinase; alpha 98.6 2.1E-08 7.2E-13 76.5 3.3 39 74-112 5-44 (168)
106 1lw7_A Transcriptional regulat 98.6 9.1E-08 3.1E-12 82.3 7.1 50 46-99 142-193 (365)
107 4aby_A DNA repair protein RECN 98.6 1.4E-08 4.7E-13 88.4 1.6 68 135-206 297-368 (415)
108 3cm0_A Adenylate kinase; ATP-b 98.6 3.9E-08 1.3E-12 76.0 3.9 39 75-113 3-42 (186)
109 3tr0_A Guanylate kinase, GMP k 98.5 3.7E-08 1.3E-12 77.2 3.6 27 73-99 4-30 (205)
110 2v54_A DTMP kinase, thymidylat 98.5 8.6E-08 2.9E-12 75.0 5.4 33 75-107 3-37 (204)
111 1zp6_A Hypothetical protein AT 98.5 5.1E-08 1.8E-12 75.6 4.0 37 73-109 6-45 (191)
112 1znw_A Guanylate kinase, GMP k 98.5 4.3E-08 1.5E-12 77.6 3.5 29 72-100 16-44 (207)
113 2xb4_A Adenylate kinase; ATP-b 98.5 1.8E-07 6.1E-12 74.9 6.9 37 78-114 2-39 (223)
114 3lnc_A Guanylate kinase, GMP k 98.5 2.5E-08 8.5E-13 80.2 1.8 36 65-100 16-52 (231)
115 1htw_A HI0065; nucleotide-bind 98.5 3.3E-08 1.1E-12 75.6 2.4 35 65-99 22-56 (158)
116 3nwj_A ATSK2; P loop, shikimat 98.5 7.7E-09 2.6E-13 84.9 -1.7 49 65-113 34-86 (250)
117 2w0m_A SSO2452; RECA, SSPF, un 98.5 5.9E-08 2E-12 77.0 3.5 27 73-99 20-46 (235)
118 1tf7_A KAIC; homohexamer, hexa 98.5 8.3E-08 2.8E-12 86.5 4.8 133 72-207 277-441 (525)
119 3pih_A Uvrabc system protein A 98.5 4E-08 1.4E-12 93.7 2.7 69 135-206 807-880 (916)
120 2z0h_A DTMP kinase, thymidylat 98.5 1.6E-07 5.5E-12 72.9 5.7 30 78-107 2-35 (197)
121 2r6f_A Excinuclease ABC subuni 98.5 4.6E-08 1.6E-12 93.3 2.9 67 137-206 849-920 (972)
122 2vf7_A UVRA2, excinuclease ABC 98.5 1.3E-08 4.3E-13 96.3 -0.9 67 137-206 734-805 (842)
123 3kb2_A SPBC2 prophage-derived 98.5 1.1E-07 3.7E-12 72.2 4.2 35 77-111 2-37 (173)
124 2wwf_A Thymidilate kinase, put 98.5 1.5E-07 5.1E-12 74.1 5.0 34 74-107 8-42 (212)
125 2ygr_A Uvrabc system protein A 98.4 7.2E-08 2.5E-12 92.2 3.4 68 136-206 866-938 (993)
126 2cdn_A Adenylate kinase; phosp 98.4 1.3E-07 4.3E-12 74.2 4.3 40 73-112 17-57 (201)
127 2gks_A Bifunctional SAT/APS ki 98.4 1.8E-07 6.2E-12 84.7 5.7 96 12-108 287-410 (546)
128 3qf7_A RAD50; ABC-ATPase, ATPa 98.4 9E-08 3.1E-12 82.5 3.1 68 137-207 283-358 (365)
129 3uie_A Adenylyl-sulfate kinase 98.4 1.5E-07 5.2E-12 73.9 3.8 39 73-111 22-66 (200)
130 3lw7_A Adenylate kinase relate 98.4 1.3E-07 4.5E-12 71.5 2.9 32 77-108 2-33 (179)
131 2iyv_A Shikimate kinase, SK; t 98.4 8.9E-08 3.1E-12 73.9 1.8 36 77-112 3-39 (184)
132 2v9p_A Replication protein E1; 98.4 3E-08 1E-12 83.6 -1.1 46 49-99 104-149 (305)
133 3cr8_A Sulfate adenylyltranfer 98.4 1.4E-07 4.6E-12 85.6 3.0 94 15-109 289-409 (552)
134 1aky_A Adenylate kinase; ATP:A 98.4 2.4E-07 8.2E-12 73.7 4.0 39 74-112 2-41 (220)
135 3a00_A Guanylate kinase, GMP k 98.4 1.6E-07 5.5E-12 73.0 2.8 24 76-99 1-24 (186)
136 1e6c_A Shikimate kinase; phosp 98.3 1.3E-07 4.6E-12 72.0 2.1 34 76-109 2-36 (173)
137 1kgd_A CASK, peripheral plasma 98.3 2.7E-07 9.1E-12 71.4 3.6 26 74-99 3-28 (180)
138 2pez_A Bifunctional 3'-phospho 98.3 3.7E-07 1.3E-11 70.2 4.2 37 74-110 3-45 (179)
139 3trf_A Shikimate kinase, SK; a 98.3 2.4E-07 8.3E-12 71.4 3.1 36 76-111 5-41 (185)
140 3b9q_A Chloroplast SRP recepto 98.3 8.9E-07 3.1E-11 74.4 6.5 33 67-99 91-123 (302)
141 1s96_A Guanylate kinase, GMP k 98.3 3.1E-07 1.1E-11 73.8 3.5 28 73-100 13-40 (219)
142 3thx_A DNA mismatch repair pro 98.3 1.1E-07 3.7E-12 91.0 0.7 129 65-203 651-794 (934)
143 3b85_A Phosphate starvation-in 98.3 2.2E-07 7.4E-12 74.1 2.2 114 74-194 20-161 (208)
144 2rhm_A Putative kinase; P-loop 98.3 3.5E-07 1.2E-11 70.7 3.3 37 74-110 3-40 (193)
145 1lvg_A Guanylate kinase, GMP k 98.3 2.6E-07 9E-12 72.7 2.6 25 75-99 3-27 (198)
146 1ly1_A Polynucleotide kinase; 98.3 2.8E-07 9.5E-12 70.4 2.6 34 76-109 2-37 (181)
147 1via_A Shikimate kinase; struc 98.2 3.4E-07 1.2E-11 70.2 2.5 33 77-109 5-38 (175)
148 2ga8_A Hypothetical 39.9 kDa p 98.2 2.3E-08 7.7E-13 85.9 -4.6 28 76-103 24-52 (359)
149 2bbw_A Adenylate kinase 4, AK4 98.2 4E-07 1.4E-11 73.8 2.9 33 75-107 26-59 (246)
150 3tau_A Guanylate kinase, GMP k 98.2 7E-07 2.4E-11 70.7 4.2 27 73-99 5-31 (208)
151 1ye8_A Protein THEP1, hypothet 98.2 5E-07 1.7E-11 70.2 3.2 61 137-202 80-152 (178)
152 1zd8_A GTP:AMP phosphotransfer 98.2 6.3E-07 2.1E-11 71.7 3.5 39 74-112 5-44 (227)
153 2ze6_A Isopentenyl transferase 98.2 1.1E-06 3.8E-11 71.8 4.9 34 76-109 1-35 (253)
154 2og2_A Putative signal recogni 98.2 1.9E-06 6.6E-11 74.1 6.3 32 68-99 149-180 (359)
155 1kht_A Adenylate kinase; phosp 98.2 4.1E-07 1.4E-11 70.1 1.8 32 76-107 3-40 (192)
156 3iij_A Coilin-interacting nucl 98.2 6.2E-07 2.1E-11 68.9 2.9 36 74-109 9-45 (180)
157 1ak2_A Adenylate kinase isoenz 98.2 8.3E-07 2.9E-11 71.3 3.7 41 72-112 12-53 (233)
158 2bdt_A BH3686; alpha-beta prot 98.2 9.2E-07 3.2E-11 68.5 3.6 35 76-110 2-38 (189)
159 2npi_A Protein CLP1; CLP1-PCF1 98.2 6.5E-07 2.2E-11 79.5 2.9 39 69-107 131-176 (460)
160 2cvh_A DNA repair and recombin 98.2 1.7E-06 6E-11 68.0 5.1 26 73-98 17-42 (220)
161 2yhs_A FTSY, cell division pro 98.2 1.4E-06 4.7E-11 77.8 4.9 34 66-99 283-316 (503)
162 2eyu_A Twitching motility prot 98.2 1.1E-06 3.9E-11 72.3 3.9 27 73-99 22-48 (261)
163 4a74_A DNA repair and recombin 98.2 1E-06 3.5E-11 69.9 3.4 27 73-99 22-48 (231)
164 2pt7_A CAG-ALFA; ATPase, prote 98.1 8.5E-07 2.9E-11 75.4 2.9 115 69-205 164-286 (330)
165 2vp4_A Deoxynucleoside kinase; 98.1 1.1E-06 3.6E-11 70.7 3.0 29 72-100 16-44 (230)
166 3be4_A Adenylate kinase; malar 98.1 8E-07 2.7E-11 70.7 2.3 37 75-111 4-41 (217)
167 2i3b_A HCR-ntpase, human cance 98.1 1.1E-06 3.7E-11 69.0 2.8 24 76-99 1-24 (189)
168 1qhx_A CPT, protein (chloramph 98.1 2.5E-06 8.6E-11 65.1 4.6 33 76-108 3-38 (178)
169 2vli_A Antibiotic resistance p 98.1 1.5E-06 5E-11 66.7 3.1 31 74-104 3-34 (183)
170 3thx_B DNA mismatch repair pro 98.1 7.1E-07 2.4E-11 85.2 1.5 126 64-195 661-800 (918)
171 1zak_A Adenylate kinase; ATP:A 98.1 1.2E-06 4.1E-11 69.7 2.6 37 75-111 4-41 (222)
172 3umf_A Adenylate kinase; rossm 98.1 3.3E-06 1.1E-10 67.7 5.0 38 72-109 25-63 (217)
173 1g8f_A Sulfate adenylyltransfe 98.1 3.7E-06 1.3E-10 75.5 5.7 97 11-108 310-435 (511)
174 2p5t_B PEZT; postsegregational 98.1 2.9E-06 9.9E-11 69.2 4.6 39 73-111 29-70 (253)
175 1e4v_A Adenylate kinase; trans 98.1 1.2E-06 4.2E-11 69.3 2.3 35 78-112 2-37 (214)
176 3euj_A Chromosome partition pr 98.1 8.4E-07 2.9E-11 79.1 1.2 35 64-99 18-52 (483)
177 3a4m_A L-seryl-tRNA(SEC) kinas 98.0 2.8E-06 9.6E-11 69.5 4.2 37 75-111 3-45 (260)
178 3zvl_A Bifunctional polynucleo 98.0 4.1E-06 1.4E-10 73.3 5.2 41 69-109 251-292 (416)
179 1odf_A YGR205W, hypothetical 3 98.0 3.1E-06 1.1E-10 70.7 4.1 27 73-99 28-54 (290)
180 1rj9_A FTSY, signal recognitio 98.0 2.8E-06 9.5E-11 71.5 3.8 26 74-99 100-125 (304)
181 3sop_A Neuronal-specific septi 98.0 2.5E-06 8.5E-11 70.6 3.3 23 77-99 3-25 (270)
182 1gvn_B Zeta; postsegregational 98.0 4.5E-06 1.5E-10 69.5 4.7 38 73-110 30-70 (287)
183 3e70_C DPA, signal recognition 98.0 3.4E-06 1.2E-10 71.7 4.1 27 73-99 126-152 (328)
184 1dek_A Deoxynucleoside monopho 98.0 6.2E-06 2.1E-10 67.2 5.2 45 76-130 1-46 (241)
185 1u0l_A Probable GTPase ENGC; p 98.0 8.7E-07 3E-11 74.3 0.1 25 75-99 168-192 (301)
186 3ney_A 55 kDa erythrocyte memb 98.0 4.4E-06 1.5E-10 66.0 4.0 27 73-99 16-42 (197)
187 3ec2_A DNA replication protein 98.0 3.7E-06 1.2E-10 64.6 3.2 27 73-99 35-61 (180)
188 2qag_B Septin-6, protein NEDD5 98.0 1.7E-06 5.9E-11 76.0 1.4 34 66-99 30-65 (427)
189 2qor_A Guanylate kinase; phosp 97.9 4.2E-06 1.4E-10 65.8 3.3 27 73-99 9-35 (204)
190 2obl_A ESCN; ATPase, hydrolase 97.9 3.3E-06 1.1E-10 72.3 2.7 35 64-99 60-94 (347)
191 2qm8_A GTPase/ATPase; G protei 97.9 3.8E-06 1.3E-10 71.6 2.9 33 67-99 46-78 (337)
192 1ltq_A Polynucleotide kinase; 97.9 3.5E-06 1.2E-10 69.9 2.6 36 76-111 2-39 (301)
193 3gmt_A Adenylate kinase; ssgci 97.9 5.9E-06 2E-10 66.8 3.8 39 76-114 8-47 (230)
194 2yvu_A Probable adenylyl-sulfa 97.9 9E-06 3.1E-10 62.7 4.6 38 72-109 9-52 (186)
195 1m7g_A Adenylylsulfate kinase; 97.9 4.1E-06 1.4E-10 66.2 2.7 26 73-98 22-47 (211)
196 2dpy_A FLII, flagellum-specifi 97.9 5.1E-06 1.7E-10 73.3 3.5 34 65-99 147-180 (438)
197 3jvv_A Twitching mobility prot 97.9 4.6E-06 1.6E-10 71.7 3.0 27 73-99 120-146 (356)
198 3kta_A Chromosome segregation 97.9 4E-06 1.4E-10 64.3 2.4 30 69-99 20-49 (182)
199 1cr0_A DNA primase/helicase; R 97.9 2.5E-06 8.6E-11 70.8 0.9 35 65-99 24-58 (296)
200 2jaq_A Deoxyguanosine kinase; 97.9 9.8E-06 3.4E-10 62.9 4.1 27 78-104 2-29 (205)
201 3d3q_A TRNA delta(2)-isopenten 97.9 1.2E-05 4E-10 68.7 4.7 33 77-109 8-41 (340)
202 2f1r_A Molybdopterin-guanine d 97.9 3.6E-06 1.2E-10 64.9 1.5 24 76-99 2-25 (171)
203 3sr0_A Adenylate kinase; phosp 97.9 7.5E-06 2.6E-10 65.0 3.3 33 77-109 1-34 (206)
204 2gza_A Type IV secretion syste 97.8 5.8E-06 2E-10 71.1 2.7 31 69-99 168-198 (361)
205 1nn5_A Similar to deoxythymidy 97.8 9.2E-06 3.1E-10 63.7 3.7 25 74-98 7-31 (215)
206 2ewv_A Twitching motility prot 97.8 1E-05 3.4E-10 69.9 4.0 27 73-99 133-159 (372)
207 1m8p_A Sulfate adenylyltransfe 97.8 3.3E-05 1.1E-09 70.3 7.6 99 11-110 312-437 (573)
208 3crm_A TRNA delta(2)-isopenten 97.8 1.5E-05 5E-10 67.6 4.9 34 76-109 5-39 (323)
209 1tf7_A KAIC; homohexamer, hexa 97.8 3.6E-06 1.2E-10 75.7 1.0 45 63-107 25-77 (525)
210 2plr_A DTMP kinase, probable t 97.8 1.3E-05 4.5E-10 62.5 4.0 27 75-101 3-30 (213)
211 1p9r_A General secretion pathw 97.8 1.6E-05 5.4E-10 69.7 4.9 26 74-99 165-190 (418)
212 3a8t_A Adenylate isopentenyltr 97.8 1.7E-05 5.7E-10 67.6 4.9 36 74-109 38-74 (339)
213 3hdt_A Putative kinase; struct 97.8 1E-05 3.5E-10 65.1 3.4 40 71-110 9-49 (223)
214 2x8a_A Nuclear valosin-contain 97.8 1.4E-05 4.8E-10 66.0 4.1 34 68-103 38-72 (274)
215 1nks_A Adenylate kinase; therm 97.8 1.3E-05 4.5E-10 61.5 3.6 23 76-98 1-23 (194)
216 1wb9_A DNA mismatch repair pro 97.8 7.1E-06 2.4E-10 77.4 2.1 34 65-99 597-630 (800)
217 1vma_A Cell division protein F 97.7 2.9E-05 9.8E-10 65.3 5.3 31 69-99 97-127 (306)
218 1pui_A ENGB, probable GTP-bind 97.7 7.3E-06 2.5E-10 63.9 1.5 29 71-99 21-49 (210)
219 2kjq_A DNAA-related protein; s 97.7 1.1E-05 3.7E-10 60.7 2.3 25 75-99 35-59 (149)
220 3fdi_A Uncharacterized protein 97.7 1.6E-05 5.3E-10 62.8 3.1 33 76-108 6-39 (201)
221 1zu4_A FTSY; GTPase, signal re 97.7 4E-05 1.4E-09 64.8 5.6 33 67-99 96-128 (320)
222 4eaq_A DTMP kinase, thymidylat 97.7 2.8E-05 9.6E-10 62.5 4.3 27 73-99 23-49 (229)
223 2rcn_A Probable GTPase ENGC; Y 97.7 1.9E-05 6.4E-10 67.9 3.2 25 75-99 214-238 (358)
224 1ewq_A DNA mismatch repair pro 97.7 1.1E-05 3.9E-10 75.6 1.9 31 66-99 569-599 (765)
225 1ixz_A ATP-dependent metallopr 97.7 2.9E-05 9.9E-10 62.8 4.1 29 69-99 44-72 (254)
226 1svm_A Large T antigen; AAA+ f 97.7 1.8E-05 6.2E-10 68.4 3.0 31 69-99 162-192 (377)
227 1nij_A Hypothetical protein YJ 97.7 1.9E-05 6.6E-10 66.5 3.1 25 75-99 3-27 (318)
228 3exa_A TRNA delta(2)-isopenten 97.7 3.6E-05 1.2E-09 65.0 4.5 34 76-109 3-37 (322)
229 1n0w_A DNA repair protein RAD5 97.7 2.3E-05 7.9E-10 62.4 3.2 26 73-98 21-46 (243)
230 2yv5_A YJEQ protein; hydrolase 97.6 2.7E-05 9.3E-10 65.2 3.7 25 74-99 163-187 (302)
231 2qmh_A HPR kinase/phosphorylas 97.6 4.2E-05 1.4E-09 60.5 4.4 35 75-109 33-67 (205)
232 2oap_1 GSPE-2, type II secreti 97.6 1.8E-05 6E-10 71.2 2.4 30 70-99 254-283 (511)
233 3foz_A TRNA delta(2)-isopenten 97.6 5.3E-05 1.8E-09 63.8 5.1 34 75-108 9-43 (316)
234 1oix_A RAS-related protein RAB 97.6 3.8E-05 1.3E-09 59.4 3.7 28 74-101 27-54 (191)
235 1iy2_A ATP-dependent metallopr 97.6 4.3E-05 1.5E-09 62.8 4.1 30 68-99 67-96 (278)
236 1gtv_A TMK, thymidylate kinase 97.6 1.9E-05 6.5E-10 61.9 1.6 21 78-98 2-22 (214)
237 2o8b_B DNA mismatch repair pro 97.6 2E-05 6.9E-10 76.1 2.1 133 64-205 770-924 (1022)
238 2f9l_A RAB11B, member RAS onco 97.5 5.2E-05 1.8E-09 58.8 3.8 25 76-100 5-29 (199)
239 1t9h_A YLOQ, probable GTPase E 97.5 1.2E-05 4.2E-10 67.6 -0.0 28 72-99 169-196 (307)
240 1nlf_A Regulatory protein REPA 97.5 4E-05 1.4E-09 63.0 3.0 27 72-98 26-52 (279)
241 1qhl_A Protein (cell division 97.5 6.2E-06 2.1E-10 66.6 -1.9 23 77-99 28-50 (227)
242 2o5v_A DNA replication and rep 97.5 3.5E-05 1.2E-09 66.2 2.7 31 67-98 18-48 (359)
243 1pzn_A RAD51, DNA repair and r 97.5 4.6E-05 1.6E-09 65.1 3.2 29 71-99 126-154 (349)
244 1xjc_A MOBB protein homolog; s 97.5 6.5E-05 2.2E-09 57.8 3.6 24 75-98 3-26 (169)
245 1np6_A Molybdopterin-guanine d 97.5 7.2E-05 2.5E-09 57.8 3.7 23 76-98 6-28 (174)
246 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 8.6E-05 2.9E-09 55.7 3.9 22 76-97 23-44 (149)
247 2px0_A Flagellar biosynthesis 97.5 6.6E-05 2.2E-09 62.8 3.5 35 74-108 103-144 (296)
248 1in4_A RUVB, holliday junction 97.4 6.9E-05 2.4E-09 63.4 3.3 25 77-101 52-77 (334)
249 2www_A Methylmalonic aciduria 97.4 0.00011 3.6E-09 62.8 4.1 26 74-99 72-97 (349)
250 1ls1_A Signal recognition part 97.4 0.00013 4.5E-09 60.8 4.6 31 67-99 91-121 (295)
251 3eph_A TRNA isopentenyltransfe 97.4 0.00011 3.8E-09 64.0 4.2 33 76-108 2-35 (409)
252 1ni3_A YCHF GTPase, YCHF GTP-b 97.4 9.8E-05 3.3E-09 64.2 3.8 28 72-99 16-43 (392)
253 3szr_A Interferon-induced GTP- 97.4 5.5E-05 1.9E-09 69.3 2.2 21 79-99 48-68 (608)
254 3tqf_A HPR(Ser) kinase; transf 97.4 0.00021 7.1E-09 55.3 5.0 35 75-109 15-49 (181)
255 1ex7_A Guanylate kinase; subst 97.4 0.0001 3.6E-09 57.5 3.3 20 79-98 4-23 (186)
256 1w1w_A Structural maintenance 97.4 0.0001 3.5E-09 64.5 3.6 27 73-99 23-49 (430)
257 2gj8_A MNME, tRNA modification 97.4 0.00011 3.8E-09 55.7 3.4 26 75-100 3-28 (172)
258 3p32_A Probable GTPase RV1496/ 97.4 0.00065 2.2E-08 57.9 8.5 25 74-98 77-101 (355)
259 2ocp_A DGK, deoxyguanosine kin 97.3 0.00013 4.4E-09 58.6 3.8 29 75-103 1-31 (241)
260 1x6v_B Bifunctional 3'-phospho 97.3 0.00017 5.9E-09 66.1 4.6 32 75-106 51-86 (630)
261 2wji_A Ferrous iron transport 97.3 0.00015 5E-09 54.5 3.2 24 76-99 3-26 (165)
262 1p5z_B DCK, deoxycytidine kina 97.3 8.6E-05 2.9E-09 60.5 1.9 33 72-104 20-54 (263)
263 1e69_A Chromosome segregation 97.2 8.4E-05 2.9E-09 62.6 1.7 62 138-203 224-291 (322)
264 4hlc_A DTMP kinase, thymidylat 97.2 0.00094 3.2E-08 52.7 7.7 23 76-98 2-24 (205)
265 2qnr_A Septin-2, protein NEDD5 97.2 0.00013 4.4E-09 61.0 2.7 23 77-99 19-41 (301)
266 2qag_C Septin-7; cell cycle, c 97.2 0.00015 5E-09 63.6 3.0 24 77-100 32-55 (418)
267 4edh_A DTMP kinase, thymidylat 97.2 0.00025 8.5E-09 56.4 4.1 24 75-98 5-28 (213)
268 2dr3_A UPF0273 protein PH0284; 97.2 0.00017 5.8E-09 57.4 3.0 25 73-97 20-44 (247)
269 2wjg_A FEOB, ferrous iron tran 97.2 0.00026 8.9E-09 53.8 3.9 25 75-99 6-30 (188)
270 2p67_A LAO/AO transport system 97.2 0.00019 6.5E-09 61.0 3.2 28 72-99 52-79 (341)
271 3qks_A DNA double-strand break 97.2 0.00029 9.9E-09 55.4 3.9 22 76-97 23-44 (203)
272 1lv7_A FTSH; alpha/beta domain 97.1 0.00072 2.4E-08 54.5 6.2 31 79-109 48-81 (257)
273 1ega_A Protein (GTP-binding pr 97.1 0.00024 8.2E-09 59.3 3.4 26 74-99 6-31 (301)
274 3lda_A DNA repair protein RAD5 97.1 0.0002 6.8E-09 62.4 2.9 26 72-97 174-199 (400)
275 3ld9_A DTMP kinase, thymidylat 97.1 0.00037 1.3E-08 55.9 4.2 26 73-98 18-43 (223)
276 3qkt_A DNA double-strand break 97.1 0.00031 1.1E-08 59.5 3.9 64 143-209 264-329 (339)
277 3lv8_A DTMP kinase, thymidylat 97.1 0.00031 1.1E-08 56.8 3.5 24 75-98 26-49 (236)
278 1ko7_A HPR kinase/phosphatase; 97.1 0.00055 1.9E-08 57.7 5.0 35 75-109 143-177 (314)
279 3cf0_A Transitional endoplasmi 97.1 0.00055 1.9E-08 56.9 5.0 31 74-104 47-78 (301)
280 2zej_A Dardarin, leucine-rich 97.1 0.00023 7.9E-09 54.3 2.4 23 77-99 3-25 (184)
281 2ffh_A Protein (FFH); SRP54, s 97.1 0.0006 2.1E-08 59.8 5.3 30 68-99 92-121 (425)
282 1udx_A The GTP-binding protein 97.0 8.2E-05 2.8E-09 65.2 -0.4 31 69-99 150-180 (416)
283 3v9p_A DTMP kinase, thymidylat 97.0 0.00027 9.3E-09 56.8 2.6 25 74-98 23-47 (227)
284 3kl4_A SRP54, signal recogniti 97.0 0.00052 1.8E-08 60.3 4.4 35 74-108 95-135 (433)
285 2dhr_A FTSH; AAA+ protein, hex 97.0 0.00055 1.9E-08 61.3 4.5 41 66-108 56-99 (499)
286 3t15_A Ribulose bisphosphate c 97.0 0.00048 1.7E-08 57.1 3.9 32 73-104 33-65 (293)
287 3m6a_A ATP-dependent protease 97.0 0.0004 1.4E-08 62.7 3.6 25 75-99 107-131 (543)
288 4tmk_A Protein (thymidylate ki 97.0 0.00045 1.5E-08 54.9 3.5 24 75-98 2-25 (213)
289 3tmk_A Thymidylate kinase; pho 97.0 0.00051 1.7E-08 54.8 3.7 27 75-101 4-31 (216)
290 2lkc_A Translation initiation 97.0 0.00064 2.2E-08 50.9 4.1 26 73-98 5-30 (178)
291 1j8m_F SRP54, signal recogniti 97.0 0.00057 1.9E-08 57.1 4.1 39 69-108 92-136 (297)
292 3b9p_A CG5977-PA, isoform A; A 96.9 0.00081 2.8E-08 55.3 4.9 29 76-104 54-83 (297)
293 1z2a_A RAS-related protein RAB 96.9 0.00061 2.1E-08 50.4 3.8 26 74-99 3-28 (168)
294 2ged_A SR-beta, signal recogni 96.9 0.00067 2.3E-08 51.7 3.9 26 74-99 46-71 (193)
295 1ky3_A GTP-binding protein YPT 96.9 0.00069 2.3E-08 50.8 3.7 26 74-99 6-31 (182)
296 3lxx_A GTPase IMAP family memb 96.9 0.00057 1.9E-08 54.6 3.4 26 74-99 27-52 (239)
297 3dm5_A SRP54, signal recogniti 96.9 0.0012 4.1E-08 58.2 5.7 34 75-108 99-138 (443)
298 1kao_A RAP2A; GTP-binding prot 96.9 0.00072 2.5E-08 49.8 3.7 24 76-99 3-26 (167)
299 1jbk_A CLPB protein; beta barr 96.9 0.00073 2.5E-08 50.9 3.8 23 76-98 43-65 (195)
300 3bos_A Putative DNA replicatio 96.9 0.00068 2.3E-08 53.3 3.7 24 75-98 51-74 (242)
301 3k53_A Ferrous iron transport 96.9 0.00061 2.1E-08 55.7 3.5 24 76-99 3-26 (271)
302 3hjn_A DTMP kinase, thymidylat 96.9 0.0029 1E-07 49.4 7.3 27 78-104 2-32 (197)
303 2ce2_X GTPase HRAS; signaling 96.9 0.0007 2.4E-08 49.7 3.5 24 76-99 3-26 (166)
304 2fn4_A P23, RAS-related protei 96.9 0.00083 2.8E-08 50.3 4.0 26 74-99 7-32 (181)
305 2gf9_A RAS-related protein RAB 96.9 0.0009 3.1E-08 51.0 4.2 28 72-99 18-45 (189)
306 2dyk_A GTP-binding protein; GT 96.9 0.00083 2.8E-08 49.3 3.9 23 77-99 2-24 (161)
307 1u8z_A RAS-related protein RAL 96.8 0.00094 3.2E-08 49.2 4.1 24 76-99 4-27 (168)
308 3h4m_A Proteasome-activating n 96.8 0.0012 4.1E-08 53.8 5.1 30 76-105 51-81 (285)
309 3hr8_A Protein RECA; alpha and 96.8 0.00064 2.2E-08 58.3 3.4 26 73-98 58-83 (356)
310 3clv_A RAB5 protein, putative; 96.8 0.0011 3.7E-08 50.4 4.5 26 74-99 5-30 (208)
311 2nzj_A GTP-binding protein REM 96.8 0.00074 2.5E-08 50.3 3.4 25 75-99 3-27 (175)
312 3ch4_B Pmkase, phosphomevalona 96.8 0.0011 3.9E-08 52.3 4.5 32 74-105 9-44 (202)
313 1upt_A ARL1, ADP-ribosylation 96.8 0.0011 3.6E-08 49.3 4.1 25 74-98 5-29 (171)
314 1fzq_A ADP-ribosylation factor 96.8 0.00088 3E-08 50.9 3.7 26 74-99 14-39 (181)
315 1c1y_A RAS-related protein RAP 96.8 0.00096 3.3E-08 49.2 3.8 24 76-99 3-26 (167)
316 2erx_A GTP-binding protein DI- 96.8 0.00085 2.9E-08 49.7 3.4 23 76-98 3-25 (172)
317 1ypw_A Transitional endoplasmi 96.8 0.00087 3E-08 63.3 4.2 34 71-104 233-267 (806)
318 1g16_A RAS-related protein SEC 96.8 0.00094 3.2E-08 49.4 3.5 24 76-99 3-26 (170)
319 1sxj_E Activator 1 40 kDa subu 96.8 0.00072 2.5E-08 56.9 3.2 20 79-98 39-58 (354)
320 1yrb_A ATP(GTP)binding protein 96.8 0.0018 6.1E-08 52.1 5.4 38 71-108 9-51 (262)
321 2w58_A DNAI, primosome compone 96.7 0.00094 3.2E-08 51.7 3.6 22 77-98 55-76 (202)
322 1z08_A RAS-related protein RAB 96.7 0.0009 3.1E-08 49.6 3.4 25 75-99 5-29 (170)
323 3con_A GTPase NRAS; structural 96.7 0.00092 3.1E-08 50.8 3.4 25 75-99 20-44 (190)
324 2qu8_A Putative nucleolar GTP- 96.7 0.0011 3.9E-08 52.3 4.0 27 73-99 26-52 (228)
325 3pqc_A Probable GTP-binding pr 96.7 0.0011 3.8E-08 50.2 3.9 26 74-99 21-46 (195)
326 2hxs_A RAB-26, RAS-related pro 96.7 0.0012 4.2E-08 49.3 4.0 25 74-98 4-28 (178)
327 1moz_A ARL1, ADP-ribosylation 96.7 0.00076 2.6E-08 50.8 2.9 25 74-98 16-40 (183)
328 2axn_A 6-phosphofructo-2-kinas 96.7 0.0011 3.8E-08 59.5 4.3 38 73-110 32-75 (520)
329 2p65_A Hypothetical protein PF 96.7 0.0009 3.1E-08 50.3 3.2 23 76-98 43-65 (187)
330 1svi_A GTP-binding protein YSX 96.7 0.0011 3.6E-08 50.6 3.6 26 74-99 21-46 (195)
331 1mky_A Probable GTP-binding pr 96.7 0.0011 3.9E-08 58.0 4.2 27 74-100 178-204 (439)
332 1z0f_A RAB14, member RAS oncog 96.7 0.0011 3.9E-08 49.4 3.7 27 73-99 12-38 (179)
333 2h17_A ADP-ribosylation factor 96.7 0.00089 3E-08 50.7 3.0 28 72-99 17-44 (181)
334 2oil_A CATX-8, RAS-related pro 96.7 0.0012 4.1E-08 50.4 3.8 27 73-99 22-48 (193)
335 3k1j_A LON protease, ATP-depen 96.7 0.0008 2.8E-08 61.4 3.2 28 72-99 56-83 (604)
336 2wsm_A Hydrogenase expression/ 96.7 0.0012 4E-08 51.7 3.8 24 75-98 29-52 (221)
337 3bc1_A RAS-related protein RAB 96.7 0.0012 4E-08 50.0 3.7 26 74-99 9-34 (195)
338 4fcw_A Chaperone protein CLPB; 96.7 0.0017 5.7E-08 53.5 4.9 24 76-99 47-70 (311)
339 1sxj_C Activator 1 40 kDa subu 96.7 0.00088 3E-08 56.4 3.2 21 79-99 49-69 (340)
340 4dsu_A GTPase KRAS, isoform 2B 96.7 0.0011 3.8E-08 50.0 3.4 25 75-99 3-27 (189)
341 1wms_A RAB-9, RAB9, RAS-relate 96.7 0.001 3.6E-08 49.7 3.2 25 75-99 6-30 (177)
342 3t34_A Dynamin-related protein 96.6 0.0014 4.7E-08 55.9 4.2 22 78-99 36-57 (360)
343 3b1v_A Ferrous iron uptake tra 96.6 0.0011 3.6E-08 54.6 3.4 24 76-99 3-26 (272)
344 1ek0_A Protein (GTP-binding pr 96.6 0.0014 4.8E-08 48.3 3.8 24 76-99 3-26 (170)
345 2a9k_A RAS-related protein RAL 96.6 0.0014 4.7E-08 49.3 3.8 25 75-99 17-41 (187)
346 1z0j_A RAB-22, RAS-related pro 96.6 0.0014 4.8E-08 48.4 3.8 25 75-99 5-29 (170)
347 1r2q_A RAS-related protein RAB 96.6 0.0009 3.1E-08 49.4 2.7 24 75-98 5-28 (170)
348 1m2o_B GTP-binding protein SAR 96.6 0.0011 3.8E-08 50.8 3.3 23 76-98 23-45 (190)
349 1nrj_B SR-beta, signal recogni 96.6 0.0015 5.2E-08 50.9 3.9 26 74-99 10-35 (218)
350 3ice_A Transcription terminati 96.6 0.0015 5E-08 56.8 4.0 31 69-99 167-197 (422)
351 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.0016 5.4E-08 52.3 4.1 30 75-104 38-68 (262)
352 2p5s_A RAS and EF-hand domain 96.6 0.0016 5.4E-08 50.2 3.9 28 72-99 24-51 (199)
353 3kkq_A RAS-related protein M-R 96.6 0.0018 6.3E-08 48.7 4.2 26 74-99 16-41 (183)
354 1knx_A Probable HPR(Ser) kinas 96.6 0.0015 5E-08 55.0 4.0 34 75-108 146-179 (312)
355 3q72_A GTP-binding protein RAD 96.6 0.0013 4.3E-08 48.7 3.2 23 76-98 2-24 (166)
356 1njg_A DNA polymerase III subu 96.6 0.0013 4.5E-08 51.2 3.5 22 77-98 46-67 (250)
357 2g6b_A RAS-related protein RAB 96.6 0.0016 5.4E-08 48.8 3.8 26 74-99 8-33 (180)
358 2j37_W Signal recognition part 96.6 0.002 6.8E-08 57.7 4.9 36 73-108 98-139 (504)
359 3q85_A GTP-binding protein REM 96.6 0.0015 5.2E-08 48.4 3.6 22 77-98 3-24 (169)
360 2y8e_A RAB-protein 6, GH09086P 96.6 0.0013 4.3E-08 49.2 3.2 24 76-99 14-37 (179)
361 3bwd_D RAC-like GTP-binding pr 96.6 0.0016 5.4E-08 48.9 3.8 26 74-99 6-31 (182)
362 2bme_A RAB4A, RAS-related prot 96.6 0.0016 5.3E-08 49.2 3.7 26 74-99 8-33 (186)
363 2hf9_A Probable hydrogenase ni 96.6 0.0016 5.6E-08 51.0 3.9 24 75-98 37-60 (226)
364 3tw8_B RAS-related protein RAB 96.6 0.0013 4.4E-08 49.2 3.2 25 74-98 7-31 (181)
365 1zd9_A ADP-ribosylation factor 96.6 0.0015 5.1E-08 49.8 3.6 27 73-99 19-45 (188)
366 2zr9_A Protein RECA, recombina 96.6 0.001 3.6E-08 56.7 2.9 26 73-98 58-83 (349)
367 2bov_A RAla, RAS-related prote 96.6 0.0018 6.3E-08 49.6 4.1 26 74-99 12-37 (206)
368 2qby_A CDC6 homolog 1, cell di 96.6 0.0012 4E-08 55.7 3.1 25 74-98 43-67 (386)
369 1bif_A 6-phosphofructo-2-kinas 96.6 0.0016 5.3E-08 57.6 4.0 26 73-98 36-61 (469)
370 1f6b_A SAR1; gtpases, N-termin 96.5 0.0013 4.6E-08 50.8 3.2 23 76-98 25-47 (198)
371 3ihw_A Centg3; RAS, centaurin, 96.5 0.0021 7.1E-08 49.1 4.2 27 73-99 17-43 (184)
372 2ohf_A Protein OLA1, GTP-bindi 96.5 0.0011 3.9E-08 57.5 3.0 27 73-99 19-45 (396)
373 3hws_A ATP-dependent CLP prote 96.5 0.0017 5.8E-08 55.2 4.0 30 76-105 51-81 (363)
374 3pih_A Uvrabc system protein A 96.5 0.00074 2.5E-08 64.5 1.9 34 60-93 8-41 (916)
375 1vg8_A RAS-related protein RAB 96.5 0.0018 6E-08 49.9 3.7 26 74-99 6-31 (207)
376 2il1_A RAB12; G-protein, GDP, 96.5 0.0015 5.1E-08 50.0 3.3 26 73-98 23-48 (192)
377 3cbq_A GTP-binding protein REM 96.5 0.0013 4.4E-08 50.8 2.9 26 73-98 20-45 (195)
378 3iev_A GTP-binding protein ERA 96.5 0.0013 4.6E-08 54.9 3.2 27 73-99 7-33 (308)
379 2vf7_A UVRA2, excinuclease ABC 96.5 0.0006 2.1E-08 64.6 1.2 34 60-93 20-53 (842)
380 1c9k_A COBU, adenosylcobinamid 96.5 0.0012 3.9E-08 51.3 2.6 25 79-103 2-26 (180)
381 2a5j_A RAS-related protein RAB 96.5 0.0026 9E-08 48.5 4.7 27 73-99 18-44 (191)
382 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0017 5.8E-08 49.3 3.5 26 74-99 5-30 (184)
383 2gf0_A GTP-binding protein DI- 96.5 0.0021 7.3E-08 49.0 4.1 25 75-99 7-31 (199)
384 2efe_B Small GTP-binding prote 96.5 0.0016 5.5E-08 48.8 3.4 26 74-99 10-35 (181)
385 3t1o_A Gliding protein MGLA; G 96.5 0.0019 6.5E-08 49.0 3.8 25 75-99 13-37 (198)
386 3lxw_A GTPase IMAP family memb 96.5 0.0016 5.5E-08 52.6 3.5 27 73-99 18-44 (247)
387 2ce7_A Cell division protein F 96.5 0.0019 6.5E-08 57.4 4.2 31 72-104 47-78 (476)
388 2h57_A ADP-ribosylation factor 96.5 0.0013 4.5E-08 50.1 2.8 27 72-98 17-43 (190)
389 3tkl_A RAS-related protein RAB 96.5 0.002 6.8E-08 49.0 3.8 26 74-99 14-39 (196)
390 2iwr_A Centaurin gamma 1; ANK 96.5 0.0021 7.3E-08 48.1 3.9 25 75-99 6-30 (178)
391 1d2n_A N-ethylmaleimide-sensit 96.5 0.0023 7.8E-08 52.0 4.4 30 75-104 63-93 (272)
392 4b4t_K 26S protease regulatory 96.5 0.0024 8.1E-08 56.0 4.7 31 75-105 205-236 (428)
393 3n70_A Transport activator; si 96.5 0.0018 6.3E-08 47.7 3.5 22 78-99 26-47 (145)
394 2fv8_A H6, RHO-related GTP-bin 96.5 0.0013 4.4E-08 51.1 2.7 31 69-99 18-48 (207)
395 1fnn_A CDC6P, cell division co 96.5 0.0017 6E-08 54.9 3.7 21 78-98 46-66 (389)
396 3auy_A DNA double-strand break 96.5 0.0017 5.8E-08 55.6 3.7 22 76-97 25-46 (371)
397 2atv_A RERG, RAS-like estrogen 96.5 0.0022 7.6E-08 49.1 4.0 26 74-99 26-51 (196)
398 1zj6_A ADP-ribosylation factor 96.5 0.0019 6.6E-08 49.0 3.6 25 74-98 14-38 (187)
399 1ksh_A ARF-like protein 2; sma 96.5 0.0021 7E-08 48.6 3.7 25 74-98 16-40 (186)
400 1mh1_A RAC1; GTP-binding, GTPa 96.5 0.0021 7E-08 48.4 3.7 24 75-98 4-27 (186)
401 4b4t_L 26S protease subunit RP 96.5 0.0026 8.8E-08 55.9 4.7 31 75-105 214-245 (437)
402 1r8s_A ADP-ribosylation factor 96.4 0.002 6.9E-08 47.4 3.5 21 78-98 2-22 (164)
403 1v5w_A DMC1, meiotic recombina 96.4 0.002 6.7E-08 54.7 3.8 27 72-98 118-144 (343)
404 2xtp_A GTPase IMAP family memb 96.4 0.0018 6.2E-08 52.2 3.5 25 75-99 21-45 (260)
405 4b4t_M 26S protease regulatory 96.4 0.0026 9E-08 55.8 4.7 32 74-105 213-245 (434)
406 2qtf_A Protein HFLX, GTP-bindi 96.4 0.0014 4.9E-08 56.2 3.0 23 78-100 181-203 (364)
407 3oes_A GTPase rhebl1; small GT 96.4 0.002 6.9E-08 49.6 3.5 26 74-99 22-47 (201)
408 1z06_A RAS-related protein RAB 96.4 0.0022 7.6E-08 48.7 3.7 26 74-99 18-43 (189)
409 4bas_A ADP-ribosylation factor 96.4 0.002 6.7E-08 49.2 3.4 28 72-99 13-40 (199)
410 3c5c_A RAS-like protein 12; GD 96.4 0.0023 7.7E-08 48.9 3.7 27 73-99 18-44 (187)
411 2xxa_A Signal recognition part 96.4 0.0033 1.1E-07 55.2 5.2 37 72-108 96-139 (433)
412 1l8q_A Chromosomal replication 96.4 0.0015 5.2E-08 54.5 2.9 23 76-98 37-59 (324)
413 2cxx_A Probable GTP-binding pr 96.4 0.0015 5.2E-08 49.3 2.7 23 77-99 2-24 (190)
414 1p6x_A Thymidine kinase; P-loo 96.4 0.0016 5.6E-08 55.2 3.1 26 74-99 5-30 (334)
415 2fg5_A RAB-22B, RAS-related pr 96.4 0.0018 6.3E-08 49.5 3.2 26 74-99 21-46 (192)
416 2b6h_A ADP-ribosylation factor 96.4 0.0025 8.6E-08 48.9 3.9 26 73-98 26-51 (192)
417 3a1s_A Iron(II) transport prot 96.4 0.0018 6.1E-08 52.8 3.1 25 75-99 4-28 (258)
418 2dby_A GTP-binding protein; GD 96.4 0.0016 5.4E-08 56.1 2.8 23 77-99 2-24 (368)
419 3cph_A RAS-related protein SEC 96.4 0.0026 9E-08 49.0 3.9 26 74-99 18-43 (213)
420 3iby_A Ferrous iron transport 96.4 0.0017 6E-08 52.8 3.0 23 77-99 2-24 (256)
421 1zbd_A Rabphilin-3A; G protein 96.4 0.0024 8.2E-08 49.1 3.6 25 75-99 7-31 (203)
422 4ad8_A DNA repair protein RECN 96.3 0.00059 2E-08 61.1 0.0 31 68-99 53-83 (517)
423 2ew1_A RAS-related protein RAB 96.3 0.0023 7.9E-08 49.7 3.4 26 74-99 24-49 (201)
424 2orw_A Thymidine kinase; TMTK, 96.3 0.0023 7.9E-08 49.4 3.4 22 76-97 3-25 (184)
425 2fh5_B SR-beta, signal recogni 96.3 0.0024 8.2E-08 49.6 3.5 25 75-99 6-30 (214)
426 1um8_A ATP-dependent CLP prote 96.3 0.0026 8.9E-08 54.3 4.0 29 77-105 73-102 (376)
427 2chg_A Replication factor C sm 96.3 0.0023 7.9E-08 49.2 3.3 20 79-98 41-60 (226)
428 2ygr_A Uvrabc system protein A 96.3 0.00089 3E-08 64.3 1.0 34 60-93 30-63 (993)
429 3eie_A Vacuolar protein sortin 96.3 0.0036 1.2E-07 52.4 4.6 29 76-104 51-80 (322)
430 3dz8_A RAS-related protein RAB 96.3 0.0027 9.2E-08 48.4 3.6 26 74-99 21-46 (191)
431 1g41_A Heat shock protein HSLU 96.3 0.0026 9E-08 56.0 3.9 29 78-106 52-81 (444)
432 2v3c_C SRP54, signal recogniti 96.3 0.0023 7.8E-08 56.2 3.5 35 74-108 97-137 (432)
433 2r6f_A Excinuclease ABC subuni 96.3 0.0009 3.1E-08 64.0 1.0 34 60-93 28-61 (972)
434 3reg_A RHO-like small GTPase; 96.3 0.0025 8.6E-08 48.6 3.4 26 74-99 21-46 (194)
435 3llu_A RAS-related GTP-binding 96.3 0.0021 7.1E-08 49.4 2.9 27 72-98 16-42 (196)
436 2gco_A H9, RHO-related GTP-bin 96.3 0.0035 1.2E-07 48.3 4.2 28 72-99 21-48 (201)
437 1x3s_A RAS-related protein RAB 96.3 0.0021 7.3E-08 48.7 2.9 25 75-99 14-38 (195)
438 3i8s_A Ferrous iron transport 96.3 0.0025 8.5E-08 52.3 3.5 24 76-99 3-26 (274)
439 3t5g_A GTP-binding protein RHE 96.3 0.0028 9.7E-08 47.6 3.6 24 75-98 5-28 (181)
440 4b4t_J 26S protease regulatory 96.3 0.0031 1.1E-07 54.8 4.2 29 77-105 183-212 (405)
441 2bcg_Y Protein YP2, GTP-bindin 96.3 0.0027 9.2E-08 48.9 3.4 26 74-99 6-31 (206)
442 4dhe_A Probable GTP-binding pr 96.3 0.0013 4.4E-08 51.4 1.6 26 74-99 27-52 (223)
443 2q3h_A RAS homolog gene family 96.3 0.0032 1.1E-07 48.3 3.7 26 73-98 17-42 (201)
444 3d8b_A Fidgetin-like protein 1 96.3 0.0041 1.4E-07 52.9 4.8 30 75-104 116-146 (357)
445 1gwn_A RHO-related GTP-binding 96.3 0.0029 9.8E-08 49.3 3.5 26 74-99 26-51 (205)
446 2e87_A Hypothetical protein PH 96.2 0.0026 8.9E-08 54.1 3.5 26 74-99 165-190 (357)
447 2r62_A Cell division protease 96.2 0.0013 4.5E-08 53.2 1.6 26 79-104 47-73 (268)
448 2dy1_A Elongation factor G; tr 96.2 0.0027 9.3E-08 58.6 3.8 28 72-99 5-32 (665)
449 3syl_A Protein CBBX; photosynt 96.2 0.003 1E-07 52.0 3.8 23 76-98 67-89 (309)
450 2cjw_A GTP-binding protein GEM 96.2 0.0035 1.2E-07 48.1 3.9 23 76-98 6-28 (192)
451 1zcb_A G alpha I/13; GTP-bindi 96.2 0.0033 1.1E-07 53.9 3.9 26 73-98 30-55 (362)
452 2hup_A RAS-related protein RAB 96.2 0.003 1E-07 48.8 3.3 27 73-99 26-52 (201)
453 2o52_A RAS-related protein RAB 96.2 0.0028 9.5E-08 48.9 3.0 25 74-98 23-47 (200)
454 2qp9_X Vacuolar protein sortin 96.2 0.0037 1.3E-07 53.2 4.0 29 77-105 85-114 (355)
455 2v1u_A Cell division control p 96.2 0.0029 1E-07 53.3 3.3 25 74-98 42-66 (387)
456 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.0039 1.3E-07 52.3 4.0 29 76-104 45-75 (322)
457 3end_A Light-independent proto 96.1 0.0056 1.9E-07 50.6 4.9 36 73-108 38-79 (307)
458 4b4t_H 26S protease regulatory 96.1 0.0044 1.5E-07 54.8 4.3 32 74-105 241-273 (467)
459 2j1l_A RHO-related GTP-binding 96.1 0.0037 1.3E-07 48.8 3.5 25 74-98 32-56 (214)
460 2z43_A DNA repair and recombin 96.1 0.0027 9.1E-08 53.4 2.9 27 72-98 103-129 (324)
461 2x77_A ADP-ribosylation factor 96.1 0.0028 9.7E-08 48.1 2.7 25 74-98 20-44 (189)
462 4gzl_A RAS-related C3 botulinu 96.1 0.0041 1.4E-07 48.1 3.7 25 74-98 28-52 (204)
463 1jal_A YCHF protein; nucleotid 96.1 0.0036 1.2E-07 53.7 3.6 24 76-99 2-25 (363)
464 1ypw_A Transitional endoplasmi 96.1 0.0056 1.9E-07 57.8 5.2 28 71-98 506-533 (806)
465 1sxj_A Activator 1 95 kDa subu 96.1 0.0051 1.7E-07 55.0 4.7 30 76-105 77-107 (516)
466 2r6a_A DNAB helicase, replicat 96.1 0.0039 1.3E-07 54.9 3.9 27 72-98 199-225 (454)
467 1wf3_A GTP-binding protein; GT 96.1 0.0034 1.2E-07 52.3 3.3 24 76-99 7-30 (301)
468 1ofh_A ATP-dependent HSL prote 96.1 0.0035 1.2E-07 51.3 3.3 32 77-108 51-85 (310)
469 2z4s_A Chromosomal replication 96.1 0.0034 1.2E-07 55.1 3.4 23 76-98 130-152 (440)
470 1e2k_A Thymidine kinase; trans 96.1 0.0025 8.6E-08 54.0 2.4 24 75-98 3-26 (331)
471 2fu5_C RAS-related protein RAB 96.1 0.0022 7.7E-08 48.2 1.9 25 74-98 6-30 (183)
472 2b8t_A Thymidine kinase; deoxy 96.0 0.0047 1.6E-07 49.4 3.9 24 74-97 10-33 (223)
473 3pfi_A Holliday junction ATP-d 96.0 0.005 1.7E-07 51.4 4.3 27 78-104 57-84 (338)
474 4ag6_A VIRB4 ATPase, type IV s 96.0 0.0035 1.2E-07 53.9 3.3 24 75-98 34-57 (392)
475 1of1_A Thymidine kinase; trans 96.0 0.003 1E-07 54.4 2.8 25 74-98 47-71 (376)
476 2f7s_A C25KG, RAS-related prot 96.0 0.0042 1.4E-07 48.2 3.5 26 74-99 23-48 (217)
477 1sxj_D Activator 1 41 kDa subu 96.0 0.0037 1.3E-07 52.3 3.3 20 79-98 61-80 (353)
478 3llm_A ATP-dependent RNA helic 96.0 0.0036 1.2E-07 49.8 3.1 23 75-97 75-97 (235)
479 3t5d_A Septin-7; GTP-binding p 96.0 0.0037 1.3E-07 51.1 3.2 23 76-98 8-30 (274)
480 4b4t_I 26S protease regulatory 96.0 0.0061 2.1E-07 53.4 4.6 32 74-105 214-246 (437)
481 2qag_A Septin-2, protein NEDD5 96.0 0.0029 1E-07 54.1 2.6 24 76-99 37-60 (361)
482 2atx_A Small GTP binding prote 96.0 0.0048 1.6E-07 47.0 3.5 25 75-99 17-41 (194)
483 3vfd_A Spastin; ATPase, microt 96.0 0.0069 2.4E-07 52.0 4.8 30 76-105 148-178 (389)
484 1tue_A Replication protein E1; 95.9 0.0045 1.5E-07 49.1 3.3 24 76-99 58-81 (212)
485 2i1q_A DNA repair and recombin 95.9 0.0043 1.5E-07 51.9 3.3 26 73-98 95-120 (322)
486 2j0v_A RAC-like GTP-binding pr 95.9 0.0068 2.3E-07 46.8 4.2 25 75-99 8-32 (212)
487 3uk6_A RUVB-like 2; hexameric 95.9 0.0046 1.6E-07 52.2 3.4 23 76-98 70-92 (368)
488 2zts_A Putative uncharacterize 95.9 0.0046 1.6E-07 48.9 3.2 25 73-97 27-51 (251)
489 3q3j_B RHO-related GTP-binding 95.9 0.0062 2.1E-07 47.6 3.9 26 74-99 25-50 (214)
490 1jwy_B Dynamin A GTPase domain 95.9 0.0045 1.5E-07 51.2 3.2 24 76-99 24-47 (315)
491 3def_A T7I23.11 protein; chlor 95.9 0.0046 1.6E-07 50.1 3.2 25 75-99 35-59 (262)
492 2qby_B CDC6 homolog 3, cell di 95.9 0.0053 1.8E-07 51.9 3.7 24 75-98 44-67 (384)
493 3cpj_B GTP-binding protein YPT 95.9 0.0057 1.9E-07 47.9 3.5 26 74-99 11-36 (223)
494 2r2a_A Uncharacterized protein 95.8 0.0052 1.8E-07 48.2 3.3 22 75-96 4-25 (199)
495 2aka_B Dynamin-1; fusion prote 95.8 0.005 1.7E-07 50.4 3.1 24 76-99 26-49 (299)
496 3bh0_A DNAB-like replicative h 95.8 0.0061 2.1E-07 51.0 3.7 26 73-98 65-90 (315)
497 2g3y_A GTP-binding protein GEM 95.8 0.0067 2.3E-07 47.7 3.7 25 74-98 35-59 (211)
498 1h65_A Chloroplast outer envel 95.8 0.0058 2E-07 49.7 3.4 25 75-99 38-62 (270)
499 3co5_A Putative two-component 95.8 0.0027 9.2E-08 46.7 1.2 21 79-99 30-50 (143)
500 3l0i_B RAS-related protein RAB 95.7 0.0012 4E-08 50.9 -1.0 27 72-98 29-55 (199)
No 1
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=100.00 E-value=1.6e-34 Score=242.71 Aligned_cols=198 Identities=44% Similarity=0.721 Sum_probs=150.6
Q ss_pred HHHHHHHHHCCCCCccEEEeecccCCCCCCcccccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHH
Q psy17138 13 VKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTI 92 (212)
Q Consensus 13 ~~in~~r~~~gl~~l~~~~i~~~~~~~~~~~~~~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl 92 (212)
.++|+.|.||||++|++++|.++. ++++++..+.++|+++.|+..+|+.+.++...+..+.++++|+|+|++||||||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~iI~I~G~~GSGKSTv 91 (281)
T 2f6r_A 13 MAVNRFRLENGKEELALYQIQLLK-DQSHNENEEDKVSSSSFRQRILGNLLQPPNERPELPSGLYVLGLTGISGSGKSSV 91 (281)
T ss_dssp ---------------CCCCCCEEC-C-----------------CEETTSCCSCCCCCTTSCTTCEEEEEEECTTSCHHHH
T ss_pred HHhhHHHHHCCCCcceEEEEEeec-CCCcccccceeecchHHHHHHHHHHhCCccccccCCCCCEEEEEECCCCCCHHHH
Confidence 479999999999999999999999 7777788899999999999999999999876667788899999999999999999
Q ss_pred HHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHHHHHhhhhHHHHHHHHH
Q psy17138 93 AKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKE 172 (212)
Q Consensus 93 ~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~~~~~i~~p~~~~~~~~ 172 (212)
++.|+.+|++++++|.+.++.+.++...+..+...||..++..+|.++|..++..+|.++..+.+++.+++|.+...+.+
T Consensus 92 a~~La~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~~~~l~~i~~P~i~~~~~~ 171 (281)
T 2f6r_A 92 AQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQMKILTDIVWPVIAKLARE 171 (281)
T ss_dssp HHHHHHHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHHHHHhhcccChHHHHHHHH
Confidence 99999999999999999999999988888888999999888777889999999999999999999999999999988887
Q ss_pred HHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 173 EIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 173 ~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
.+.+.. .+..++++|++++++.+|..+||.+|+++||++
T Consensus 172 ~~~~~~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~e 211 (281)
T 2f6r_A 172 EMDVAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPET 211 (281)
T ss_dssp HHHHHHHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHH
T ss_pred HHHHHhccCCCEEEEEechhhccchHHhCCEEEEEcCCHH
Confidence 776544 445799999999999889899999999999975
No 2
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.97 E-value=3.2e-31 Score=213.36 Aligned_cols=137 Identities=29% Similarity=0.528 Sum_probs=129.5
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCCh
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~ 152 (212)
...++-|||||++||||||++++|+.+|++++|+|.++|+++.++...+..+...||..++..+|.+||..|++.+|+||
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~ 85 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAARGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDE 85 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHHTTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCH
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHCCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCH
Confidence 45689999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccc-cccccccCeEEEEEeCCC
Q psy17138 153 DEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 153 ~~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~ 211 (212)
..+.++++++||.++.++.+++.+ .+..++++|+|+|+| .+|.++||.+|+|+||++
T Consensus 86 ~~~~~L~~i~HP~I~~~~~~~~~~--~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e 143 (210)
T 4i1u_A 86 DARRRLEAITHPLIRAETEREARD--AQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVD 143 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--CCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh--cCCCEEEEEEecccccCCccccCCeEEEEECCHH
Confidence 999999999999999999998876 345789999999999 999999999999999975
No 3
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.92 E-value=4.4e-25 Score=175.59 Aligned_cols=132 Identities=33% Similarity=0.553 Sum_probs=119.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc-CCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCC
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL-GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSN 151 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~ 151 (212)
...-++|||+|++||||||+++.|+.. |++++++|.+.++.+.+ .++.+...||..++. +|.++|..|+..+|.+
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~ 84 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLE-DGKVNRKKLAGIVFES 84 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBS-SSSBCHHHHHHHHTTC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcC-CCCcCHHHHHHHHhCC
Confidence 345689999999999999999999976 99999999999998876 567888999999988 8899999999999999
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 152 KDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 152 ~~~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
+..+.++++++||.++..+..++... ..++++|+|++++.+|.++||.+|+|+||++
T Consensus 85 ~~~~~~l~~i~hP~i~~~~~~~~~~~---~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e 141 (192)
T 2grj_A 85 RENLKKLELLVHPLMKKRVQEIINKT---SGLIVIEAALLKRMGLDQLCDHVITVVASRE 141 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CEEEEEECTTTTTTTGGGGCSEEEEEECCHH
T ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHc---CCEEEEEEeceeecChHHhCCEEEEEECCHH
Confidence 99999999999999999988777642 4699999999999999999999999999975
No 4
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.91 E-value=9.7e-24 Score=168.22 Aligned_cols=134 Identities=28% Similarity=0.447 Sum_probs=115.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEM 155 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~ 155 (212)
+.+|||+|++||||||++++|+++|++++++|.+.++++.++...+..+...||..++..++..+|..++..+|+++..+
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHTTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHCCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 46899999999999999999999999999999999888888777888899999998877678899999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
.+++++++|.+++.+.+.+... ....+++++|++.+.+|...||.+|++++|++
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e 135 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDVSPQ 135 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEECCHH
T ss_pred HHHHhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEECCHH
Confidence 9999999999999988877653 24589999999999888899999999999875
No 5
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.86 E-value=6.7e-22 Score=157.15 Aligned_cols=134 Identities=31% Similarity=0.513 Sum_probs=117.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHHHH
Q psy17138 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDEMN 156 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~~~ 156 (212)
.+|+|+|++||||||+++.|+++|++++++|.+.++.+.++...++.+...+|..++..++..+|..++..+|+++..+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~~ 81 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRELGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKLR 81 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHTTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHCCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHHH
Confidence 57999999999999999999999999999999988888777677788888899887655678899999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 157 ~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
+++.+.+|.+...+.+.+.... +..++++|++++++.+|..+||.+|++++|++
T Consensus 82 ~l~~l~~~~v~~~~~~~~~~~~-~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e 135 (204)
T 2if2_A 82 KLEEITHRALYKEIEKITKNLS-EDTLFILEASLLVEKGTYKNYDKLIVVYAPYE 135 (204)
T ss_dssp HHHHHHHHHHTTTHHHHHHHSC-TTCCEEEECSCSTTTTCGGGSSEEEEECCCHH
T ss_pred HHHHhhCHHHHHHHHHHHHhcc-CCCEEEEEccccccCCchhhCCEEEEEECCHH
Confidence 9999999999988887776532 22689999999999888889999999999865
No 6
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.84 E-value=2.4e-20 Score=149.86 Aligned_cols=135 Identities=27% Similarity=0.506 Sum_probs=117.7
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCChHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNKDE 154 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~~~ 154 (212)
++.+|+|+|++||||||+++.|+++|++++++|.+.++.+.++......+...+|...+..++.+++..++..+|+++..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~~ 82 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEE 82 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHcCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHHH
Confidence 46899999999999999999999999999999999998887777677888889998887666778999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 155 MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 155 ~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
+.+++++++|.+...+...+... ...+++++.+++++.+|...+|.+|++++|++
T Consensus 83 ~~~l~~~~~p~v~~~~~~~~~~~--~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e 137 (218)
T 1vht_A 83 KNWLNALLHPLIQQETQHQIQQA--TSPYVLWVVPLLVENSLYKKANRVLVVDVSPE 137 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--CSSEEEEECTTTTTTTGGGGCSEEEEEECCHH
T ss_pred HHHHHHhHCHHHHHHHHHHHHhc--CCCEEEEEeeeeeccCccccCCEEEEEECCHH
Confidence 99999999999988877666542 34578899999998878889999999999865
No 7
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.78 E-value=5.1e-19 Score=139.77 Aligned_cols=131 Identities=28% Similarity=0.541 Sum_probs=105.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCCh
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~~ 152 (212)
..++.+|+|+|++||||||+++.|+..|++++++|.+.+..+ ++.. ..+...| ...+. ++.+++..++..+|.++
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~g~~~id~d~~~~~~~-~~~~--~~i~~~~-~~~~~-~g~i~~~~l~~~~~~~~ 79 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSWGYPVLDLDALAARAR-ENKE--EELKRLF-PEAVV-GGRLDRRALARLVFSDP 79 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHTTCCEEEHHHHHHHHH-HHTH--HHHHHHC-GGGEE-TTEECHHHHHHHHTTSH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHCCCEEEcccHHHHHhc-CChH--HHHHHHH-HHHHh-CCCcCHHHHHHHHhCCH
Confidence 456889999999999999999999988999999998877765 3322 4555666 55554 67789999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 153 DEMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 153 ~~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
..+.+++.+.+|.+. .+.+.... .+..+++++++++++.+|...+|.+|++++|.+
T Consensus 80 ~~~~~l~~~~~~~i~---~~~i~~~~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e 136 (203)
T 1uf9_A 80 ERLKALEAVVHPEVR---RLLMEELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLE 136 (203)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHH
T ss_pred HHHHHHHHHhChHHH---HHHHHHhhhcCCCEEEEEecceeccCchhhCCEEEEEECCHH
Confidence 988888888999886 23344333 346799999999998888888999999999865
No 8
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.54 E-value=8.2e-16 Score=132.85 Aligned_cols=159 Identities=17% Similarity=0.153 Sum_probs=113.4
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..+++.+++|...+....+++++++...+|+++||+||||||||||+|+|+++ |...++...+.
T Consensus 25 i~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r 104 (366)
T 3tui_C 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 104 (366)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 45777777775433334578889999999999999999999999999999997 33344432221
Q ss_pred ccc-cc-------CCc---------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH-
Q psy17138 111 HRA-YD-------VGT---------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 111 ~~~-~~-------~~~---------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~- 153 (212)
+.+ |. +.. .....+++.+|..-.. +.|+.+|..|+..+.++|+
T Consensus 105 ~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~l 184 (366)
T 3tui_C 105 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV 184 (366)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSE
T ss_pred CcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 000 10 100 0123445556653221 3367789999999999998
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.++|.....+.+.++++. .....+++-+|.+.++ ..+||+++++.
T Consensus 185 LLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~--~~~aDrv~vl~ 238 (366)
T 3tui_C 185 LLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV--KRICDCVAVIS 238 (366)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 5688999999999999999998875 3356777779999775 57899999885
No 9
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.50 E-value=3.6e-15 Score=128.62 Aligned_cols=154 Identities=15% Similarity=0.118 Sum_probs=108.0
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc----------ccc
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL----------GHR 112 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i----------~~~ 112 (212)
.+++.+++|.. ...++++++...+|++++|+||||||||||+|+|+++ |...++...+ .+.
T Consensus 6 ~i~~ls~~y~~----~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 6 HIGHLSKSFQN----TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp EEEEEEEEETT----EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEeEEEEECC----EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 46666677742 2467788899999999999999999999999999997 3333332211 000
Q ss_pred c-c-------cCCc---------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--H
Q psy17138 113 A-Y-------DVGT---------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--E 154 (212)
Q Consensus 113 ~-~-------~~~~---------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~ 154 (212)
+ | .+.- .....+++.+|..-+. +.|+.+|-.|+..+..+|+ +
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLL 161 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELIL 161 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 0 0 0000 1233455566654321 3467789999999999998 5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 155 MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 155 ~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.+.++|..+..+.+.+.+.. .....+++-+|.+.++ ..+||+++++.
T Consensus 162 LDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea--~~~aDri~vl~ 213 (359)
T 3fvq_A 162 LDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA--LQYADRIAVMK 213 (359)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH--HHHCSEEEEEE
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHHCCEEEEEE
Confidence 688999999999999987765543 3456777779999886 47899999875
No 10
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.50 E-value=4.8e-15 Score=123.70 Aligned_cols=155 Identities=12% Similarity=0.125 Sum_probs=108.1
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------cc
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------HR 112 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~~ 112 (212)
.+.+.+++|... ...++++++...+|++++|+||||||||||+++|+++ |...++...+. +.
T Consensus 9 ~i~~ls~~y~~~---~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 9 KVEELNYNYSDG---THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEECTTS---CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEECCC---CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 466666666421 1367778899999999999999999999999999987 33334332220 00
Q ss_pred -cccCC--------ch---------------------hHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--
Q psy17138 113 -AYDVG--------TR---------------------GNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 113 -~~~~~--------~~---------------------~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~-- 153 (212)
.|.++ .. .....++.+|..-+. +.|+.+|..|+..+..+|+
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lL 165 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 165 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 01110 00 122334555543221 3467788999999999998
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.++|.....+.+.++++. .....+++-+|.+.++ ..+||+++++.
T Consensus 166 lLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~--~~~~drv~~l~ 218 (275)
T 3gfo_A 166 ILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV--PLYCDNVFVMK 218 (275)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG--GGGCSEEEEEE
T ss_pred EEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 5688999999999999999988775 3356777789999775 47899999885
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.48 E-value=3.1e-15 Score=124.32 Aligned_cols=154 Identities=13% Similarity=0.066 Sum_probs=107.5
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-----------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH----------- 111 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~----------- 111 (212)
.+.+.+++|.. ...++++++...+|+++||+||||||||||+++|+++ |...++...+..
T Consensus 13 ~~~~l~~~~~~----~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 13 EASHLHYHVQQ----QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEETT----EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred EEEeEEEEeCC----eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 45555565532 2456778899999999999999999999999999987 333443322110
Q ss_pred ------ccccC---------------C---chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcC------ChH-
Q psy17138 112 ------RAYDV---------------G---TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFS------NKD- 153 (212)
Q Consensus 112 ------~~~~~---------------~---~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~------~~~- 153 (212)
.++.+ . ........+.+|..-+. +.|+.+|-.|+..+.+ +|+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 00000 0 01233445566643221 3467788899998888 888
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.++|.....+.+.++++. .+...+++-+|.+.++ ..+||+++++.
T Consensus 169 LllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~--~~~~d~v~vl~ 222 (266)
T 4g1u_C 169 LFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLA--ALYADRIMLLA 222 (266)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHH--HHhCCEEEEEE
Confidence 5688999999999999999998875 4455788889999775 46899999885
No 12
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.47 E-value=3.5e-15 Score=129.57 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=109.0
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------ccc---
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HRA--- 113 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~~--- 113 (212)
.+++.+++|.. ...++++++...+|++++|+||||||||||+|+|+++ |...++...+. +.+
T Consensus 5 ~~~~l~~~yg~----~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V 80 (381)
T 3rlf_A 5 QLQNVTKAWGE----VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80 (381)
T ss_dssp EEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE
T ss_pred EEEeEEEEECC----EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE
Confidence 46667777742 2467788999999999999999999999999999997 33334332211 000
Q ss_pred -----ccCCc---------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHH
Q psy17138 114 -----YDVGT---------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKL 158 (212)
Q Consensus 114 -----~~~~~---------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~ 158 (212)
+.+.- .....+++.+|...+. +.|+.+|-.|+..+..+|+ +++++
T Consensus 81 fQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEP 160 (381)
T 3rlf_A 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (381)
T ss_dssp CTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred ecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 01110 1123445555654321 3467789999999999998 56889
Q ss_pred HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+++..+..+.+.++++. .....+++-+|.+.++ ..+||+++++.
T Consensus 161 ts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea--~~~aDri~vl~ 208 (381)
T 3rlf_A 161 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA--MTLADKIVVLD 208 (381)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred CcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH--HHhCCEEEEEE
Confidence 99999999999999988775 3245677779999875 57999999875
No 13
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.46 E-value=9.8e-15 Score=120.64 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=109.8
Q ss_pred cccccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-------
Q psy17138 43 EQEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------- 110 (212)
Q Consensus 43 ~~~~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------- 110 (212)
.+....+.+.+++|.. ...++++++...+|.+++|+||||||||||+++|+++ |...++...+.
T Consensus 12 ~~~~l~i~~l~~~y~~----~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 87 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGK----KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 87 (256)
T ss_dssp --CCEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHH
T ss_pred cCCeEEEEEEEEEECC----EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHh
Confidence 3455567777777742 2356778899999999999999999999999999987 32333321110
Q ss_pred cc-cccCCc----------------------------hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH-
Q psy17138 111 HR-AYDVGT----------------------------RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 111 ~~-~~~~~~----------------------------~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~- 153 (212)
+. .|.++. .....+++.+|..-. -+.|+.+|..++..+.++|+
T Consensus 88 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 167 (256)
T 1vpl_A 88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL 167 (256)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 00 011110 012234455554321 13467788899999999998
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.++|.....+.+.+.++......+++.+|.+.+. ..+||+++++.
T Consensus 168 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~--~~~~d~v~~l~ 220 (256)
T 1vpl_A 168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV--EFLCDRIALIH 220 (256)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH--TTTCSEEEEEE
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH--HHHCCEEEEEE
Confidence 56899999999999999999988753356778889998764 46899999875
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.45 E-value=2.9e-14 Score=117.81 Aligned_cols=155 Identities=13% Similarity=0.124 Sum_probs=107.1
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------cc
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------HR 112 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~~ 112 (212)
..+++.+++|.. ...++++++...+|++++|+||||||||||+|+|+++ |...++...+. +.
T Consensus 8 l~i~~l~~~y~~----~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 8 LRTENIVKYFGE----FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEETT----EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEeeeEEEECC----EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 346666666632 1357788999999999999999999999999999987 22233221110 00
Q ss_pred c-ccC------------------------C-------------c----hhHHHHHHHhCCccCC-------CCCccchHh
Q psy17138 113 A-YDV------------------------G-------------T----RGNQVVRELFGEDIAL-------PDGSIDRKK 143 (212)
Q Consensus 113 ~-~~~------------------------~-------------~----~~~~~~~~~~g~~~~~-------~~~~~~r~~ 143 (212)
+ |.+ + . .....+++.+|..-.. +.|+.+|-.
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~ 163 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE 163 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHH
Confidence 0 000 0 0 0123344555543211 236778889
Q ss_pred HHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 144 LGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 144 l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++..+.++|+ +++++.+.++|.....+.+.++++......+++-+|.+.+. ..+||+++++.
T Consensus 164 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~--~~~~d~v~~l~ 227 (257)
T 1g6h_A 164 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV--LNYIDHLYVMF 227 (257)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT--GGGCSEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 9999999998 56889999999999999999988763356777889998764 47899999875
No 15
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.45 E-value=8.8e-15 Score=119.39 Aligned_cols=156 Identities=12% Similarity=0.043 Sum_probs=104.0
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H 111 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~ 111 (212)
+.+.+++|.........++++++...+|++++|+||||||||||+++|+++ |...++...+. +
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 83 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRD 83 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred EEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhc
Confidence 444555553221122456778899999999999999999999999999987 33333332110 0
Q ss_pred -ccccCC-------ch------------------------hHHHHHHHhCCcc-C-C------CCCccchHhHHHHhcCC
Q psy17138 112 -RAYDVG-------TR------------------------GNQVVRELFGEDI-A-L------PDGSIDRKKLGAIVFSN 151 (212)
Q Consensus 112 -~~~~~~-------~~------------------------~~~~~~~~~g~~~-~-~------~~~~~~r~~l~~~vf~~ 151 (212)
-.|.++ .. ........+|..- . + +.|+.+|-.++..+.++
T Consensus 84 ~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~ 163 (235)
T 3tif_A 84 KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN 163 (235)
T ss_dssp HEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 001000 00 1123344455321 1 1 23677788999999999
Q ss_pred hH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 152 KD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
|+ +++++.+.++|.....+.+.+.++. .....+++-+|.+.. ..+||+++++.
T Consensus 164 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~---~~~~d~i~~l~ 219 (235)
T 3tif_A 164 PPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV---ARFGERIIYLK 219 (235)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH---HTTSSEEEEEE
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH---HHhCCEEEEEE
Confidence 98 5689999999999999999998875 325677777999853 26899999875
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.45 E-value=1.1e-14 Score=117.88 Aligned_cols=152 Identities=13% Similarity=0.100 Sum_probs=103.7
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------c
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------H 111 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------~ 111 (212)
+.+.+++|.. ...++++++...+|.+++|+||||||||||+++|+++ |...++...+. +
T Consensus 7 ~~~l~~~y~~----~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 7 AENIKKVIRG----YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEETT----EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred EEeEEEEECC----EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 4555555532 2356778889999999999999999999999999987 33333321110 0
Q ss_pred c-cccCCc-------h---------------------hHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--
Q psy17138 112 R-AYDVGT-------R---------------------GNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD-- 153 (212)
Q Consensus 112 ~-~~~~~~-------~---------------------~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~-- 153 (212)
. .|.++. . ....+++.+|..-.. +.|+.+|-.++..+.++|+
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILL 162 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 0 011110 0 112334555543211 2356778899999999998
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 ~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.++|.....+.+.+.++......+++.+|.+.++ .+||+++++.
T Consensus 163 lLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~---~~~d~v~~l~ 213 (224)
T 2pcj_A 163 FADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA---ELTHRTLEMK 213 (224)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH---TTSSEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH---HhCCEEEEEE
Confidence 56889999999999999999988762356777789997653 5899999875
No 17
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.44 E-value=1.5e-14 Score=119.90 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=106.7
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------c
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------H 111 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~ 111 (212)
..+.+.+++|.. ...++++++...+|++++|+||||||||||+++|+++ |...++...+. +
T Consensus 25 l~i~~l~~~y~~----~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 25 IDVHQLKKSFGS----LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp EEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred EEEEeEEEEECC----EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 345666666631 1356778899999999999999999999999999987 33333321110 0
Q ss_pred c-cccCCc-------h----------------------hHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH-
Q psy17138 112 R-AYDVGT-------R----------------------GNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 112 ~-~~~~~~-------~----------------------~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~- 153 (212)
. .|.++. . ....+++.+|..-. -+.|+.+|..++..+.++|+
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l 180 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI 180 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE
Confidence 0 011110 0 11233445554321 12366778899999999998
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.++|.....+.+.++++......+++.+|.+.++ ..+||+++++.
T Consensus 181 llLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~--~~~~d~v~~l~ 233 (263)
T 2olj_A 181 MLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA--REVGDRVLFMD 233 (263)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH--HHhCCEEEEEE
Confidence 56899999999999999999988753356778889998764 46899999875
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.44 E-value=2.6e-14 Score=123.91 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=108.7
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------ccc-c
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HRA-Y 114 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~~-~ 114 (212)
..+.+.+++|.. ...++++++...+|++++|+||||||||||+|+|+++ |...++...+. +.+ |
T Consensus 12 l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 87 (372)
T 1v43_A 12 VKLENLTKRFGN----FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87 (372)
T ss_dssp EEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred EEEEEEEEEECC----EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEE
Confidence 345666666632 2356778899999999999999999999999999987 33333321110 000 0
Q ss_pred -------cCC-----------------c----hhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHH
Q psy17138 115 -------DVG-----------------T----RGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNK 157 (212)
Q Consensus 115 -------~~~-----------------~----~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~ 157 (212)
.+. . .....+++.+|..-+ -+.|+.+|..|+..+..+|+ ++++
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 167 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 167 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 000 0 113345566665322 14578889999999999998 5688
Q ss_pred HHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 158 LNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 158 ~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.+.+++..+..+.+.++++. .....+++.+|.+.++ ..+||+++++.
T Consensus 168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a--~~~adri~vl~ 216 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA--MTMGDRIAVMN 216 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 999999999999999988775 3245677779998775 47899999875
No 19
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.44 E-value=2e-14 Score=123.93 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=110.5
Q ss_pred ccccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------cc
Q psy17138 44 QEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HR 112 (212)
Q Consensus 44 ~~~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~ 112 (212)
.....+.+.+++|. + ....++++++...+|++++|+||||||||||+|+|+++ |...++...+. +.
T Consensus 12 ~~~l~~~~l~~~y~--g-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 12 SMTIEFVGVEKIYP--G-GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp CEEEEEEEEEECCT--T-STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred CceEEEEEEEEEEc--C-CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCc
Confidence 33456777777772 1 12456778899999999999999999999999999987 33333322110 00
Q ss_pred c-c-------cCCc---------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--H
Q psy17138 113 A-Y-------DVGT---------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--E 154 (212)
Q Consensus 113 ~-~-------~~~~---------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~ 154 (212)
+ | .+.- .....+++.+|..-+. +.|+.+|..|+..+..+|+ +
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 168 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLL 168 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 0 0 0100 0123445556653221 3467789999999999998 5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 155 MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 155 ~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++.+.+++..+..+.+.++++. .....+++.+|.+.++ ..+||+++++.
T Consensus 169 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a--~~~adri~vl~ 220 (355)
T 1z47_A 169 FDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA--LEVADRVLVLH 220 (355)
T ss_dssp EESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence 688899999999999999988775 3245777779998875 47899999875
No 20
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.44 E-value=2.8e-14 Score=123.30 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=107.0
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------ccc-c-
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HRA-Y- 114 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~~-~- 114 (212)
.+.+.+++|.. ...++++++...+|++++|+||||||||||+|+|+++ |...++...+. +.+ |
T Consensus 5 ~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (362)
T 2it1_A 5 KLENIVKKFGN----FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80 (362)
T ss_dssp EEEEEEEESSS----SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEeEEEEECC----EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEE
Confidence 35566666631 2356778899999999999999999999999999997 33334322110 000 1
Q ss_pred ------cCCc---------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHH
Q psy17138 115 ------DVGT---------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKL 158 (212)
Q Consensus 115 ------~~~~---------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~ 158 (212)
.+.- ....++++.+|..-+. +.|+.+|..|+..+..+|+ +++++
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 160 (362)
T 2it1_A 81 FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEP 160 (362)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESG
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 0110 0123445556653221 3367788999999999998 56899
Q ss_pred HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+++..+..+.+.++++. .....+++.+|.+.++ ..+||+++++.
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a--~~~adri~vl~ 208 (362)
T 2it1_A 161 LSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEA--LAMADRIAVIR 208 (362)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH--HHhCCEEEEEE
Confidence 99999999999999998775 3245677779998775 47899999885
No 21
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.43 E-value=1.7e-14 Score=124.57 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=107.7
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------ccc-c-
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HRA-Y- 114 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~~-~- 114 (212)
.+++.+++|.. ...++++++...+|++++|+||||||||||+|+|+++ |...++...+. +.+ |
T Consensus 5 ~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (359)
T 2yyz_A 5 RVVNLKKYFGK----VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV 80 (359)
T ss_dssp EEEEEEEEETT----EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEEEEECC----EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE
Confidence 35566666631 2356778899999999999999999999999999997 33333321110 000 0
Q ss_pred ------cCC---------------------chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHH
Q psy17138 115 ------DVG---------------------TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKL 158 (212)
Q Consensus 115 ------~~~---------------------~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~ 158 (212)
.+. ......+++.+|..-+. +.|+.+|..|+..+..+|+ +++++
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEP 160 (359)
T ss_dssp CSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 000 01234556666654221 3467789999999999998 56889
Q ss_pred HhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 159 NQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 159 ~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+++..+..+.+.++++. .....+++.+|.+.++ ..+||+++++.
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~--~~~adri~vl~ 208 (359)
T 2yyz_A 161 LSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEA--MTMASRIAVFN 208 (359)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH--HHhCCEEEEEE
Confidence 99999999999999988775 3245777779998775 47899999875
No 22
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.43 E-value=1.1e-14 Score=120.79 Aligned_cols=154 Identities=17% Similarity=0.176 Sum_probs=105.2
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------------ 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------------ 110 (212)
.+.+.+++|.. ...++++++...+|.+++|+||||||||||+++|+++ |...++...+.
T Consensus 8 ~i~~l~~~y~~----~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 8 HVIDLHKRYGG----HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp EEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEeeEEEEECC----EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 35566666631 1356778899999999999999999999999999987 33333321111
Q ss_pred ---------ccc-ccCCc-------h----------------------hHHHHHHHhCCccC--C------CCCccchHh
Q psy17138 111 ---------HRA-YDVGT-------R----------------------GNQVVRELFGEDIA--L------PDGSIDRKK 143 (212)
Q Consensus 111 ---------~~~-~~~~~-------~----------------------~~~~~~~~~g~~~~--~------~~~~~~r~~ 143 (212)
+.+ |.++. . ....+++.+|..-. + +.|+.+|..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~ 163 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 163 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHH
Confidence 000 11100 0 11233444554321 1 235677889
Q ss_pred HHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 144 LGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 144 l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++..+.++|+ +++++.+.++|.....+.+.++++......+++.+|.+.++ ..+||+++++.
T Consensus 164 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~--~~~~d~v~~l~ 227 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA--RHVSSHVIFLH 227 (262)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHH--HHHCSEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 9999999998 56889999999999999999988753355677779998764 46899999875
No 23
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.41 E-value=2.8e-14 Score=122.71 Aligned_cols=152 Identities=13% Similarity=0.118 Sum_probs=105.9
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------ccc-c--
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HRA-Y-- 114 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~~-~-- 114 (212)
+.+.+++|. .. .++++++...+|++++|+||||||||||+|+|+++ |...++...+. +.+ |
T Consensus 4 ~~~l~~~y~---~~--~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 4 IESLSRKWK---NF--SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp EEEEEEECS---SC--EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred EEEEEEEEC---CE--EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 445555553 11 56778889999999999999999999999999997 33334322110 000 1
Q ss_pred -----cCCc------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhhh
Q psy17138 115 -----DVGT------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQAI 162 (212)
Q Consensus 115 -----~~~~------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~ 162 (212)
.+.- .....+++.+|..-+. +.|+.+|-.|+..+..+|+ +++++.+.+
T Consensus 79 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~L 158 (348)
T 3d31_A 79 QNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL 158 (348)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTS
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 0110 1223445556643221 3367788899999999998 568889999
Q ss_pred hHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 163 WPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 163 ~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++..+..+.+.++++. .....+++.+|.+.++ ..+||+++++.
T Consensus 159 D~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~--~~~adri~vl~ 202 (348)
T 3d31_A 159 DPRTQENAREMLSVLHKKNKLTVLHITHDQTEA--RIMADRIAVVM 202 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH--HHHCSEEEEES
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 9999999999998875 3355777779998775 47899999874
No 24
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.41 E-value=3e-14 Score=123.62 Aligned_cols=154 Identities=17% Similarity=0.121 Sum_probs=106.4
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc-----------
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH----------- 111 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~----------- 111 (212)
.+++.+++|.. ...++++++...+|++++|+||||||||||+|+|+++ |...++...+..
T Consensus 5 ~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 5 RLVDVWKVFGE----VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred EEEeEEEEECC----EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH
Confidence 35566666631 2356778889999999999999999999999999987 333333211100
Q ss_pred -cc-c-------cCCc---------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH-
Q psy17138 112 -RA-Y-------DVGT---------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 112 -~~-~-------~~~~---------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~- 153 (212)
.+ | .+.- .....+++.+|..-+. +.|+.+|..|+..+..+|+
T Consensus 81 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 160 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV 160 (372)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 00 1 1110 0123445556653221 3467788899999999998
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++..+..+.+.++++. .....+++.+|.+.++ ..+||+++++.
T Consensus 161 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a--~~~adri~vl~ 214 (372)
T 1g29_1 161 FLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA--MTMGDRIAVMN 214 (372)
T ss_dssp EEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred EEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH--HHhCCEEEEEe
Confidence 5688899999999999999888775 3245677779998775 47899999875
No 25
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.41 E-value=1.9e-13 Score=107.93 Aligned_cols=130 Identities=18% Similarity=0.121 Sum_probs=83.9
Q ss_pred EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccccC----C-----chhHHHHHHHhCCccCCCCCccchHhHHHH
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDV----G-----TRGNQVVRELFGEDIALPDGSIDRKKLGAI 147 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~~~----~-----~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~ 147 (212)
+|+|+|++||||||+++.|++ +|++++++|.+.+....+ + ...+..+...++..+...++..+....+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 899999999999999999986 799999999887654211 1 124556666666544322221111111112
Q ss_pred hcCChH---HHHH-HHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 148 VFSNKD---EMNK-LNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 148 vf~~~~---~~~~-~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
+|.+.. +... .....+|.+++.+.+.+++.. ..++++++++. ..+...+|.+|++++|++
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e 147 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP---PPFVAEGRDMG-TAVFPEAAHKFYLTASPE 147 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC---SCEEEEESSCC-CCCCTTCSEEEEEECCHH
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc---CCEEEEcccee-EEEecCCcEEEEEECCHH
Confidence 222111 1111 113578888888877766543 67899999887 456677999999999975
No 26
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.40 E-value=4.8e-14 Score=115.40 Aligned_cols=150 Identities=16% Similarity=0.093 Sum_probs=101.6
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc------cc-cccC
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG------HR-AYDV 116 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~------~~-~~~~ 116 (212)
+++.+++|.. .++++++...+ .+++|+||||||||||+++|+++ |...++...+. +. .|.+
T Consensus 4 ~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 4 KVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp EEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred EEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence 4455555531 26778888999 99999999999999999999987 32333321110 00 0111
Q ss_pred Cc--------------------------hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhh
Q psy17138 117 GT--------------------------RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQA 161 (212)
Q Consensus 117 ~~--------------------------~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i 161 (212)
+. .....+++.+|..-.. +.|+.+|..++..+.++|+ +++++.+.
T Consensus 77 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~ 156 (240)
T 2onk_A 77 QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSA 156 (240)
T ss_dssp SSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSS
T ss_pred CCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 00 0122344555543211 2356778899999999998 56889999
Q ss_pred hhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 162 IWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 162 ~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++|...+.+.+.+.+.. .....+++.+|.+.+. ..+||+++++.
T Consensus 157 LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~--~~~~d~i~~l~ 201 (240)
T 2onk_A 157 VDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA--AMLADEVAVML 201 (240)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH--HHHCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 99999999999998775 3245677779998764 46899999875
No 27
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.39 E-value=2.2e-14 Score=123.64 Aligned_cols=154 Identities=8% Similarity=0.074 Sum_probs=106.9
Q ss_pred ceechhhhhhhhccccC--CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------
Q psy17138 48 KLSSSNLRMRELGTLRK--PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------- 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~--~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------- 110 (212)
.+++.+++|.. .. .++++++...+|++++|+||||||||||+|+|+++ |...++...+.
T Consensus 5 ~i~~l~~~y~~----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 5 IVKNVSKVFKK----GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEGG----GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEeEEEEECC----EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 35566666632 13 56778899999999999999999999999999987 32333221110
Q ss_pred -ccc-c-------cCC---------------------chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH
Q psy17138 111 -HRA-Y-------DVG---------------------TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 111 -~~~-~-------~~~---------------------~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~ 153 (212)
+.+ | .+. ......+++.+|..-+. +.|+.+|..|+..+..+|+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~ 160 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS 160 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 000 0 000 01123455566653221 3467789999999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++..+..+.+.++++. .....+++.+|.+.++ ..+||+++++.
T Consensus 161 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~--~~~adri~vl~ 215 (353)
T 1oxx_K 161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI--FAIADRVGVLV 215 (353)
T ss_dssp EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 5688999999999999999888775 3245777779998775 47899999875
No 28
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.39 E-value=2.4e-14 Score=117.14 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=103.1
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc---------c-c
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------H-R 112 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------~-~ 112 (212)
.+++.+++|.. ...++++++...+|++++|+||||||||||+++|+++ |...++...+. + -
T Consensus 8 ~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 8 EVQSLHVYYGA----IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred EEEeEEEEECC----eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 35566666632 1356778889999999999999999999999999987 22233221110 0 0
Q ss_pred cccCC------------------------ch---hHHHHHHHhC-CccC-------CCCCccchHhHHHHhcCChH--HH
Q psy17138 113 AYDVG------------------------TR---GNQVVRELFG-EDIA-------LPDGSIDRKKLGAIVFSNKD--EM 155 (212)
Q Consensus 113 ~~~~~------------------------~~---~~~~~~~~~g-~~~~-------~~~~~~~r~~l~~~vf~~~~--~~ 155 (212)
.|.++ .. ....+++.++ ..-. -+.|+.+|-.++..+.++|+ ++
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL 163 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM 163 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 01000 00 1223333342 2111 13457778899999999998 56
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 156 NKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 156 ~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++.+.++|.....+.+.+++.......+++.+|.+.+. ..+||+++++.
T Consensus 164 DEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~--~~~~d~v~~l~ 213 (240)
T 1ji0_A 164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGA--LKVAHYGYVLE 213 (240)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHH--HHHCSEEEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH--HHhCCEEEEEE
Confidence 889999999999999999987753345677779998654 46899999875
No 29
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.38 E-value=4.4e-14 Score=118.11 Aligned_cols=155 Identities=11% Similarity=0.079 Sum_probs=105.3
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------c
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------H 111 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------~ 111 (212)
..+.+.+++|.. ...++++++...+|++++|+||||||||||+++|+++ |...++...+. +
T Consensus 22 l~~~~l~~~y~~----~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 22 IQLDQIGRMKQG----KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred EEEEeEEEEECC----EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 456666666642 1356778899999999999999999999999999987 33333321111 0
Q ss_pred cc-cc-------CC------------------------c---hhHHHHHHHhCCccCC-------CCCccchHhHHHHhc
Q psy17138 112 RA-YD-------VG------------------------T---RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVF 149 (212)
Q Consensus 112 ~~-~~-------~~------------------------~---~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf 149 (212)
.+ |. .. . .....+++.+|..-+. +.|+.+|..++..+.
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~ 177 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALM 177 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh
Confidence 00 00 00 0 0112334455543211 235677889999999
Q ss_pred CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEE--EEEeccccccccccccCeEEEEE
Q psy17138 150 SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVI--VIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 150 ~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~v--vie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+|+ +++++.+.++|...+.+.+.++++......+ ++-+|.+.+. ..+||+++++.
T Consensus 178 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~--~~~~d~v~~l~ 237 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEI--TANFSKILLLK 237 (279)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGC--CTTCCEEEEEE
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHH--HHhCCEEEEEE
Confidence 9998 5688999999999999999988775223445 6679998764 47899999875
No 30
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.38 E-value=6.2e-14 Score=115.59 Aligned_cols=154 Identities=9% Similarity=-0.038 Sum_probs=104.8
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-----e-------eeeCC-cc-----c
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-----G-------LINCD-QL-----G 110 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-----~-------vi~~D-~i-----~ 110 (212)
+++.+++|.. + ...++++++...+|.+++|+||||||||||+++|+++-. . ++.-+ .+ .
T Consensus 7 i~~l~~~y~~-~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv 83 (253)
T 2nq2_C 7 VENLGFYYQA-E--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSV 83 (253)
T ss_dssp EEEEEEEETT-T--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBH
T ss_pred EeeEEEEeCC-C--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCH
Confidence 4555555531 1 134667888899999999999999999999999998721 1 11111 00 0
Q ss_pred ccc--cc----------CCc---hhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138 111 HRA--YD----------VGT---RGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI 166 (212)
Q Consensus 111 ~~~--~~----------~~~---~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~ 166 (212)
.+. +. +.. .....+++.+|..-+. +.|+.+|-.++..+..+|+ +++++.+.++|..
T Consensus 84 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~ 163 (253)
T 2nq2_C 84 LDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLAN 163 (253)
T ss_dssp HHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHH
T ss_pred HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 000 00 011 1234455666654221 3467788899999999998 5688999999999
Q ss_pred HHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 167 LAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 167 ~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.+.+.+.. .....+++.+|.+.+. ..+||+++++.
T Consensus 164 ~~~l~~~l~~l~~~~g~tvi~vtHd~~~~--~~~~d~v~~l~ 203 (253)
T 2nq2_C 164 QDIVLSLLIDLAQSQNMTVVFTTHQPNQV--VAIANKTLLLN 203 (253)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEESCHHHH--HHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHH--HHhCCEEEEEe
Confidence 999999998875 3256777889998764 46899999875
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.37 E-value=2.8e-13 Score=111.41 Aligned_cols=153 Identities=12% Similarity=0.094 Sum_probs=102.0
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-------CCeeeeCCccc--------c-c
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-------GAGLINCDQLG--------H-R 112 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-------g~~vi~~D~i~--------~-~ 112 (212)
+++.+++|.. ...++++++...+|++++|+||||||||||+++|+++ |...++...+. + .
T Consensus 6 ~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 6 IRDLWASIDG----ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred EEeEEEEECC----EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 4555555531 2356778889999999999999999999999999996 22233321110 0 0
Q ss_pred c-ccCCc-------------------------------hhHHHHHHHhCCc--cC-------CCCCccchHhHHHHhcCC
Q psy17138 113 A-YDVGT-------------------------------RGNQVVRELFGED--IA-------LPDGSIDRKKLGAIVFSN 151 (212)
Q Consensus 113 ~-~~~~~-------------------------------~~~~~~~~~~g~~--~~-------~~~~~~~r~~l~~~vf~~ 151 (212)
+ |.++. .....+++.+|.. .. -+.|+.+|-.++..+.++
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~ 161 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE 161 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence 0 11110 0112233445541 11 135677888999999999
Q ss_pred hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccc-cCeEEEEE
Q psy17138 152 KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQ-VHEIWVTF 207 (212)
Q Consensus 152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~-~d~v~~v~ 207 (212)
|+ +++++.+.++|.....+.+.++++......+++.+|.+.+. ..+ ||+++++.
T Consensus 162 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~--~~~~~d~v~~l~ 218 (250)
T 2d2e_A 162 PTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL--NYIQPDKVHVMM 218 (250)
T ss_dssp CSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG--GTSCCSEEEEEE
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH--HHhcCCEEEEEE
Confidence 98 56889999999999999999988754456778889998664 356 59999875
No 32
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.37 E-value=2.3e-13 Score=111.63 Aligned_cols=118 Identities=18% Similarity=0.272 Sum_probs=70.2
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH-cCCe----------eeeCCccccccccCCchhHHHHHHHhCCccCCCCCccch
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET-LGAG----------LINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDR 141 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~----------vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r 141 (212)
..++.+|+|+|++||||||+++.|+. +|++ ++++|.+.+.+.. + .+++
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~-------~--------------~~~~ 77 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTS-------E--------------QKAK 77 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCH-------H--------------HHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccCh-------h--------------hhhh
Confidence 34578999999999999999999986 8877 6788876554211 0 0111
Q ss_pred HhHHHHhcCChHH------HHHHHhhhhHHHHH------HHHHHHHh-hc-CCCcEEEEEecccc-ccccccccCeEEEE
Q psy17138 142 KKLGAIVFSNKDE------MNKLNQAIWPLILA------QVKEEIAR-LS-ESHKVIVIEAAVLL-SAKWQDQVHEIWVT 206 (212)
Q Consensus 142 ~~l~~~vf~~~~~------~~~~~~i~~p~~~~------~~~~~i~~-~~-~~~~~vvie~~~l~-e~~~~~~~d~v~~v 206 (212)
...+...|.+|.. ...++.+.+|.... .....+.+ .. ....++++|+++++ +.++.+.||.+|++
T Consensus 78 ~~~g~~~f~~~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l 157 (252)
T 1uj2_A 78 ALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFV 157 (252)
T ss_dssp HHTTCSCTTSGGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEE
T ss_pred hccCCCCCCCcchhhHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEE
Confidence 2222234444443 23333333221000 00000000 00 24579999999987 67788889999999
Q ss_pred EeCCC
Q psy17138 207 FIPEQ 211 (212)
Q Consensus 207 ~~~~~ 211 (212)
++|++
T Consensus 158 ~~~~e 162 (252)
T 1uj2_A 158 DTDAD 162 (252)
T ss_dssp ECCHH
T ss_pred eCCHH
Confidence 99865
No 33
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.37 E-value=9.5e-14 Score=110.19 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=77.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc----CCee--eeCCcccccc---ccCCchhHHHHHHHhCCccCCCCCccchHh
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL----GAGL--INCDQLGHRA---YDVGTRGNQVVRELFGEDIALPDGSIDRKK 143 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~v--i~~D~i~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~ 143 (212)
..++.+++|+|++||||||+++.|.++ |..+ ++.|...+.. +..+.....+ ++ .+.+++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~--------~~--~~~~d~~~ 88 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFE--------YY--YLQWDVEW 88 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHH--------HH--HTSSCHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccC--------CC--ccccCHHH
Confidence 566899999999999999999999863 4433 3456544321 1121111000 00 24578888
Q ss_pred HHHHhcCChHH--HHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEEeCCCC
Q psy17138 144 LGAIVFSNKDE--MNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQE 212 (212)
Q Consensus 144 l~~~vf~~~~~--~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~~ 212 (212)
++..+|++... ...+..+.||.... .. .... ....++++|++++++.+|.++||.+|+|+||+++
T Consensus 89 l~~~v~~~l~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~ 156 (201)
T 1rz3_A 89 LTHQLFRQLKASHQLTLPFYDHETDTH---SK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREI 156 (201)
T ss_dssp HHHHTGGGTTTCSEEEEEEEETTTTEE---EE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC---
T ss_pred HHHHHHHHHhcCCccccCceeccCCCC---CC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHH
Confidence 88888876532 11122344441100 00 0111 3567999999999998899999999999999874
No 34
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.36 E-value=2.7e-13 Score=112.49 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=100.1
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------ccc---ccc---------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------GHR---AYD--------- 115 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------~~~---~~~--------- 115 (212)
.++++++...+|.+++|+||||||||||+++|+++ |...++...+ ..+ .+.
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~ 101 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVA 101 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHH
Confidence 46778889999999999999999999999999987 2223322111 000 000
Q ss_pred -------CC---chhHHHHHHHhCCc--cC-C------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138 116 -------VG---TRGNQVVRELFGED--IA-L------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI 174 (212)
Q Consensus 116 -------~~---~~~~~~~~~~~g~~--~~-~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i 174 (212)
+. ......+++.+|.. -+ + +.|+.+|-.++..+..+|+ +++++.+.++|.....+.+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l 181 (266)
T 2yz2_A 102 FAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 181 (266)
T ss_dssp HTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 00 01134455666654 21 1 2356778899999999998 568899999999999999999
Q ss_pred HhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 175 ARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 175 ~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.......+++.+|.+.+. ..+||+++++.
T Consensus 182 ~~l~~~g~tii~vtHd~~~~--~~~~d~v~~l~ 212 (266)
T 2yz2_A 182 EKWKTLGKTVILISHDIETV--INHVDRVVVLE 212 (266)
T ss_dssp HHHHHTTCEEEEECSCCTTT--GGGCSEEEEEE
T ss_pred HHHHHcCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 88752356778889998764 46899999875
No 35
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.36 E-value=2.1e-13 Score=113.21 Aligned_cols=155 Identities=11% Similarity=0.062 Sum_probs=104.8
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-------CCeeeeCCccc--------c
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-------GAGLINCDQLG--------H 111 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-------g~~vi~~D~i~--------~ 111 (212)
..+.+.+++|.. ...++++++...+|.+++|+||||||||||+++|+++ |...++...+. +
T Consensus 21 l~~~~l~~~y~~----~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 21 LSIKDLHVSVED----KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp EEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred EEEEeEEEEECC----EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 346666666631 2356778899999999999999999999999999996 22233321110 0
Q ss_pred -cc-ccCCc-----------------------------------hhHHHHHHHhCCc--cCC-------CCCccchHhHH
Q psy17138 112 -RA-YDVGT-----------------------------------RGNQVVRELFGED--IAL-------PDGSIDRKKLG 145 (212)
Q Consensus 112 -~~-~~~~~-----------------------------------~~~~~~~~~~g~~--~~~-------~~~~~~r~~l~ 145 (212)
.+ |.++. .....+++.+|.. ..+ +.|+.+|-.|+
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA 176 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 176 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 00 11100 0112334455642 111 22455788899
Q ss_pred HHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccc-cCeEEEEE
Q psy17138 146 AIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQ-VHEIWVTF 207 (212)
Q Consensus 146 ~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~-~d~v~~v~ 207 (212)
..+..+|+ +++++.+.++|.....+.+.++++......+++.+|.+.+. ..+ ||+++++.
T Consensus 177 raL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~--~~~~~d~v~~l~ 239 (267)
T 2zu0_C 177 QMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRIL--DYIKPDYVHVLY 239 (267)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGG--GTSCCSEEEEEE
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHH--HhhcCCEEEEEE
Confidence 99999998 56889999999999999999988754456788889998664 344 89999874
No 36
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.36 E-value=1.7e-13 Score=112.55 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=103.7
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR 112 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~ 112 (212)
...+++.+++|... ....++++++...+|++++|+||||||||||+++|+++ |...++...+. +.
T Consensus 7 ~~~~~~l~~~y~~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 7 DITFRNIRFRYKPD--SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEESSTT--SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred ceeEEEEEEEeCCC--CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 34566666666211 12356778899999999999999999999999999987 33333321110 00
Q ss_pred -cccCC---------------------chhHHHHHHHhCCc------------------cCCCCCccchHhHHHHhcCCh
Q psy17138 113 -AYDVG---------------------TRGNQVVRELFGED------------------IALPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 113 -~~~~~---------------------~~~~~~~~~~~g~~------------------~~~~~~~~~r~~l~~~vf~~~ 152 (212)
.|.++ .......++.++.. ..-+.|+.+|-.++..+..+|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 01110 00111222222221 011346778889999999999
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+ +++++.+.++|.....+.+.+++... ...+++-+|.+... ..||+++++.
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~-g~tviivtH~~~~~---~~~d~v~~l~ 217 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTV---KNADRIIVME 217 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGGG---TTSSEEEEEE
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEeCCHHHH---HhCCEEEEEE
Confidence 8 56889999999999999999988753 56777779998654 3599999875
No 37
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.35 E-value=1.6e-12 Score=103.15 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=72.8
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc--CCeeeeCCccccccccCCchhHHHHHHHhCCccC---CCCCccchHhHHH
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL--GAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIA---LPDGSIDRKKLGA 146 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l--g~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~r~~l~~ 146 (212)
...++.+++|+|++||||||+++.|+++ ++.+++.|.+.+. .... ..+...+ .....+++..+..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~----~~~~------~~~~~~~~~~~~~~~~~~~~l~~ 86 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKP----ESEI------ETDKNGFLQYDVLEALNMEKMMS 86 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCC----GGGS------CBCTTSCBCCSSGGGBCHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccC----HhHh------hccccCCChhHHHHHhHHHHHHH
Confidence 4667899999999999999999999985 8899998865432 1100 0011000 0111234444432
Q ss_pred HhcCChHHHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccc-cccccccCeEEEEEeCCC
Q psy17138 147 IVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 147 ~vf~~~~~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~ 211 (212)
.+ ..+++..++|.+...+.. ..+..++++|++++++ ..|.+.||.++++++|++
T Consensus 87 ~i------~~~l~~~~~~~~~~~~~~-----~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~ 141 (207)
T 2qt1_A 87 AI------SCWMESARHSVVSTDQES-----AEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYE 141 (207)
T ss_dssp HH------HHHHHHHTTSSCCC----------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHH
T ss_pred HH------HHHHhCCCCCCcCCCeee-----cCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHH
Confidence 22 223334444433322221 1346799999999887 367889999999999865
No 38
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.34 E-value=1.3e-14 Score=116.97 Aligned_cols=157 Identities=14% Similarity=0.076 Sum_probs=105.9
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc---ccc-cccCC
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL---GHR-AYDVG 117 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i---~~~-~~~~~ 117 (212)
..+++.+++|. . ..++++++...+|++++|+||||||||||+++|+++ |...++...+ .+. .|.++
T Consensus 11 l~~~~ls~~y~---~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 11 LEIRDLSVGYD---K--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp EEEEEEEEESS---S--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred EEEEEEEEEeC---C--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 34566666663 2 456778899999999999999999999999999987 3233332111 000 01000
Q ss_pred --------------------------chhHHHHHHHhCCccCC------CCCccchHhHHHHhcCChH--HHHHHHhhhh
Q psy17138 118 --------------------------TRGNQVVRELFGEDIAL------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIW 163 (212)
Q Consensus 118 --------------------------~~~~~~~~~~~g~~~~~------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~ 163 (212)
......+++.+|..-.. +.|+.+|-.++..+..+|+ +++++.+.++
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD 165 (214)
T 1sgw_A 86 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165 (214)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 01223445556543211 2356778889999999998 5688999999
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCC
Q psy17138 164 PLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPE 210 (212)
Q Consensus 164 p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~ 210 (212)
|.....+.+.+.+.......+++.+|.+.+. ..+||++|+...+.
T Consensus 166 ~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~--~~~~d~v~~~~~~~ 210 (214)
T 1sgw_A 166 EDSKHKVLKSILEILKEKGIVIISSREELSY--CDVNENLHKYSTKI 210 (214)
T ss_dssp TTTHHHHHHHHHHHHHHHSEEEEEESSCCTT--SSEEEEGGGGBC--
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEeCCcc
Confidence 9999999998877652345777789998764 47899988766554
No 39
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.33 E-value=3.5e-13 Score=111.52 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=102.5
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccc--------cc-c
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLG--------HR-A 113 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~--------~~-~ 113 (212)
..+++.+++|.... ....++++++...+|.+++|+||||||||||+++|+++ |...++...+. +. .
T Consensus 18 l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~ 96 (260)
T 2ghi_A 18 IEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIG 96 (260)
T ss_dssp EEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEE
T ss_pred EEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEE
Confidence 34566666663211 12356778889999999999999999999999999987 33333321110 00 0
Q ss_pred ccCC---------------------chhHHHHHHHhCCc-----------------c-CCCCCccchHhHHHHhcCChH-
Q psy17138 114 YDVG---------------------TRGNQVVRELFGED-----------------I-ALPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 114 ~~~~---------------------~~~~~~~~~~~g~~-----------------~-~~~~~~~~r~~l~~~vf~~~~- 153 (212)
|.++ .......++.++.. . .-+.|+.+|-.++..+..+|+
T Consensus 97 ~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 176 (260)
T 2ghi_A 97 IVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKI 176 (260)
T ss_dssp EECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCE
Confidence 1111 00111222222210 0 113466778889999999998
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.++|.....+.+.+.+... ...+++-+|.+... ..||+++++.
T Consensus 177 llLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~---~~~d~i~~l~ 227 (260)
T 2ghi_A 177 VIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTI---SSAESIILLN 227 (260)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGS---TTCSEEEEEE
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHH---HhCCEEEEEE
Confidence 56888999999999999999988754 56788889998664 3599999875
No 40
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.33 E-value=2.1e-13 Score=112.15 Aligned_cols=141 Identities=20% Similarity=0.194 Sum_probs=98.4
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccc--------cc-cccCC--------------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLG--------HR-AYDVG-------------- 117 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~--------~~-~~~~~-------------- 117 (212)
.++++++...+|.+++|+||||||||||+++|+++ |...++...+. +. .|.++
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 94 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL 94 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHH
Confidence 45667888999999999999999999999999987 32233321110 00 01000
Q ss_pred ---------chhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH-------H--HHHHHhhhhHHHHHHHHH
Q psy17138 118 ---------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD-------E--MNKLNQAIWPLILAQVKE 172 (212)
Q Consensus 118 ---------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~-------~--~~~~~~i~~p~~~~~~~~ 172 (212)
......+++.+|..-+ -+.|+.+|-.++..+.++|+ + ++++.+.++|.....+.+
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~ 174 (249)
T 2qi9_C 95 TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK 174 (249)
T ss_dssp HTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHH
T ss_pred HHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHH
Confidence 1123345555664322 13366778889988888887 3 578999999999999999
Q ss_pred HHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 173 EIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 173 ~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+++.......+++.+|.+.+. ..+||+++++.
T Consensus 175 ~l~~l~~~g~tviivtHd~~~~--~~~~d~v~~l~ 207 (249)
T 2qi9_C 175 ILSALSQQGLAIVMSSHDLNHT--LRHAHRAWLLK 207 (249)
T ss_dssp HHHHHHHTTCEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred HHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEE
Confidence 9988752356777889998664 46899999875
No 41
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.32 E-value=6.3e-13 Score=115.91 Aligned_cols=156 Identities=15% Similarity=0.089 Sum_probs=106.3
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CCeeeeCCccc--------ccc
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GAGLINCDQLG--------HRA 113 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi~~D~i~--------~~~ 113 (212)
...+++.+++|... ....++++++...+|++++|+||||||||||+++|+++ |...++...+. +.+
T Consensus 19 ~i~~~~l~~~y~~~--~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 19 QMTVKDLTAKYTEG--GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CEEEEEEEEESSSS--SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTE
T ss_pred eEEEEEEEEEecCC--CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCE
Confidence 35677777777421 23467888999999999999999999999999999987 33344432221 000
Q ss_pred -ccCC--------------------chhHHHHHHHhCCccC------------------CCCCccchHhHHHHhcCChH-
Q psy17138 114 -YDVG--------------------TRGNQVVRELFGEDIA------------------LPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 114 -~~~~--------------------~~~~~~~~~~~g~~~~------------------~~~~~~~r~~l~~~vf~~~~- 153 (212)
|.++ .......++.++..-+ -+.|+.+|-.|+..+..+|+
T Consensus 97 g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l 176 (390)
T 3gd7_A 97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 176 (390)
T ss_dssp EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 1000 0112233333332110 14567789999999999998
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.++|..+..+.+.+++... ...+++-+|.+ ++ ..+||+++++.
T Consensus 177 LLLDEPts~LD~~~~~~l~~~l~~~~~-~~tvi~vtHd~-e~--~~~aDri~vl~ 227 (390)
T 3gd7_A 177 LLLDEPSAHLDPVTYQIIRRTLKQAFA-DCTVILCEARI-EA--MLECDQFLVIE 227 (390)
T ss_dssp EEEESHHHHSCHHHHHHHHHHHHTTTT-TSCEEEECSSS-GG--GTTCSEEEEEE
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhC-CCEEEEEEcCH-HH--HHhCCEEEEEE
Confidence 56889999999999999999887643 45677779986 33 24699999885
No 42
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.32 E-value=9.2e-14 Score=113.80 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=100.8
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc--------cccc-c
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL--------GHRA-Y 114 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i--------~~~~-~ 114 (212)
+++.+++|. + ....++++++...+|.+++|+||||||||||+++|+++ |...++...+ .+.+ |
T Consensus 4 ~~~l~~~y~--~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 4 ARHVDFAYD--D-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEECSS--S-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEeC--C-CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 444555552 1 12356778889999999999999999999999999987 4444433111 0000 1
Q ss_pred cCC----------------------chhHHHHHHHhCCccC------------------CCCCccchHhHHHHhcCChH-
Q psy17138 115 DVG----------------------TRGNQVVRELFGEDIA------------------LPDGSIDRKKLGAIVFSNKD- 153 (212)
Q Consensus 115 ~~~----------------------~~~~~~~~~~~g~~~~------------------~~~~~~~r~~l~~~vf~~~~- 153 (212)
.+. .......++.+|..-+ -+.|+.+|-.++..+.++|+
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 000 0112233334443211 13356678889999999998
Q ss_pred -HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 -EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 -~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.++|.....+.+.+.+.. ....+++.+|.+... ..||+++++.
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~---~~~d~v~~l~ 211 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTI---VDADKIYFIE 211 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHH---HHCSEEEEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHH---HhCCEEEEEE
Confidence 5678888999999989988887775 356778889998653 3599999885
No 43
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.30 E-value=7.3e-13 Score=106.18 Aligned_cols=133 Identities=9% Similarity=0.058 Sum_probs=75.5
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccccccc----CC-----chhHHHHHHHhCCccCCCCC----ccch
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYD----VG-----TRGNQVVRELFGEDIALPDG----SIDR 141 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~~----~~-----~~~~~~~~~~~g~~~~~~~~----~~~r 141 (212)
+.+|+|+|++||||||+++.|++ +|++++++|.+.+.... .+ ......+...+|.......+ ....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 56899999999999999999986 69999998877654311 11 11223333434332211000 0001
Q ss_pred HhHHHHhcCChHHHHHH-HhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 142 KKLGAIVFSNKDEMNKL-NQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 142 ~~l~~~vf~~~~~~~~~-~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
..+. .-|.+....... ..-.+|.++..+....... .....+++|++.+.+ .+...+|.+|++++|.+
T Consensus 85 ~~v~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~vldg~~~~~-~~~~~~d~~i~l~~~~e 152 (227)
T 1cke_A 85 EDVS-GEIRTQEVANAASQVAAFPRVREALLRRQRAF-RELPGLIADGRDMGT-VVFPDAPVKIFLDASSE 152 (227)
T ss_dssp EECH-HHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCTTCEEEEESSCCC-CCCTTCSEEEEEECCHH
T ss_pred eeCc-hhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHH-HhCCCEEEECCCccc-eEecCCCEEEEEeCCHH
Confidence 0111 112222222111 1125667666665444332 234688999997655 34567999999999865
No 44
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.29 E-value=7e-13 Score=110.31 Aligned_cols=157 Identities=18% Similarity=0.120 Sum_probs=103.5
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------c-
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------R- 112 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~- 112 (212)
..+.+.+++|...+ ....++++++...+|++++|+||||||||||+++|+++ |...++...+.. .
T Consensus 17 l~~~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 95 (271)
T 2ixe_A 17 VKFQDVSFAYPNHP-NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV 95 (271)
T ss_dssp EEEEEEEECCTTCT-TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred EEEEEEEEEeCCCC-CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccE
Confidence 45666666664210 12356778899999999999999999999999999987 333333221100 0
Q ss_pred cccCC------chh----------------H---------HHHHHHh--CCccC-------CCCCccchHhHHHHhcCCh
Q psy17138 113 AYDVG------TRG----------------N---------QVVRELF--GEDIA-------LPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 113 ~~~~~------~~~----------------~---------~~~~~~~--g~~~~-------~~~~~~~r~~l~~~vf~~~ 152 (212)
.|.++ ... . ..++..+ |..-. -+.|+.+|-.|+..+..+|
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p 175 (271)
T 2ixe_A 96 AAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP 175 (271)
T ss_dssp EEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCC
T ss_pred EEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 01000 000 0 1112222 11100 1346778889999999999
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+ +++++.+.++|.....+.+.+.+.. .....+++.+|.+... ..||+++++.
T Consensus 176 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~---~~~d~v~~l~ 230 (271)
T 2ixe_A 176 RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLA---ERAHHILFLK 230 (271)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHH---TTCSEEEEEE
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH---HhCCEEEEEE
Confidence 8 5688999999999999999998875 3356778889998764 2499999875
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.29 E-value=7.5e-13 Score=109.71 Aligned_cols=137 Identities=9% Similarity=-0.042 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcC----CeeeeCCccc------ccc-ccCCc---------------
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG----AGLINCDQLG------HRA-YDVGT--------------- 118 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg----~~vi~~D~i~------~~~-~~~~~--------------- 118 (212)
.++++++... |.+++|+||||||||||+++|+++- ...++...+. +-. |.++.
T Consensus 20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~ 98 (263)
T 2pjz_A 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYE 98 (263)
T ss_dssp EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHH
T ss_pred eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhh
Confidence 4667888899 9999999999999999999999873 2223321110 001 11110
Q ss_pred -------hhHHHHHHHhCCc-cC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCC
Q psy17138 119 -------RGNQVVRELFGED-IA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESH 181 (212)
Q Consensus 119 -------~~~~~~~~~~g~~-~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~ 181 (212)
.....+++.+|.. -. -+.|+.+|-.++..+..+|+ +++++.+.++|.....+.+.+++...
T Consensus 99 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-- 176 (263)
T 2pjz_A 99 ELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK-- 176 (263)
T ss_dssp HHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--
T ss_pred hhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--
Confidence 1123445566654 21 12356778899999999998 56889999999999999999987642
Q ss_pred cEEEEEeccccccccccccC-eEEEEE
Q psy17138 182 KVIVIEAAVLLSAKWQDQVH-EIWVTF 207 (212)
Q Consensus 182 ~~vvie~~~l~e~~~~~~~d-~v~~v~ 207 (212)
.+++.+|.+.+. ..+|| +++++.
T Consensus 177 -tviivtHd~~~~--~~~~d~~i~~l~ 200 (263)
T 2pjz_A 177 -EGILVTHELDML--NLYKEYKAYFLV 200 (263)
T ss_dssp -EEEEEESCGGGG--GGCTTSEEEEEE
T ss_pred -cEEEEEcCHHHH--HHhcCceEEEEE
Confidence 777889998664 47899 998875
No 46
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.27 E-value=4.1e-13 Score=113.59 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=103.3
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc--------c
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH--------R 112 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~--------~ 112 (212)
...+.+++++|.. ....++++++..++|++++|+||||||||||+++|.++ |...+++..+.. .
T Consensus 53 ~i~~~~vs~~y~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~ 129 (306)
T 3nh6_A 53 RIEFENVHFSYAD---GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH 129 (306)
T ss_dssp CEEEEEEEEESST---TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHT
T ss_pred eEEEEEEEEEcCC---CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcc
Confidence 3557777777742 12356778899999999999999999999999999987 333444322210 0
Q ss_pred -cccCC------c---------------hhHHHHHHHhCCc------------------cCCCCCccchHhHHHHhcCCh
Q psy17138 113 -AYDVG------T---------------RGNQVVRELFGED------------------IALPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 113 -~~~~~------~---------------~~~~~~~~~~g~~------------------~~~~~~~~~r~~l~~~vf~~~ 152 (212)
.|.++ . .......+..+.. ..-+.|+.+|-.|++.+..+|
T Consensus 130 i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p 209 (306)
T 3nh6_A 130 IGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAP 209 (306)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred eEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCC
Confidence 01100 0 0111111111110 001346778899999999999
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
. +++++.+.++|.....+.+.+.+...+ .++++-+|.+... . .||++++++
T Consensus 210 ~iLlLDEPts~LD~~~~~~i~~~l~~l~~~-~Tvi~itH~l~~~--~-~aD~i~vl~ 262 (306)
T 3nh6_A 210 GIILLDEATSALDTSNERAIQASLAKVCAN-RTTIVVAHRLSTV--V-NADQILVIK 262 (306)
T ss_dssp SEEEEECCSSCCCHHHHHHHHHHHHHHHTT-SEEEEECCSHHHH--H-TCSEEEEEE
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEEcChHHH--H-cCCEEEEEE
Confidence 8 557888899999999999888877543 5667779998764 3 499999885
No 47
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.26 E-value=1.2e-12 Score=118.62 Aligned_cols=137 Identities=19% Similarity=0.111 Sum_probs=92.7
Q ss_pred CCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc---cccc-CCchhH------------------H
Q psy17138 70 PHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH---RAYD-VGTRGN------------------Q 122 (212)
Q Consensus 70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~---~~~~-~~~~~~------------------~ 122 (212)
++...+|+++||+|+||||||||+++|+++ |...++...++. .... ...... .
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~ 367 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE 367 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHH
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHH
Confidence 445678999999999999999999999986 333222222111 1100 001111 1
Q ss_pred HHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEecccc
Q psy17138 123 VVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLL 192 (212)
Q Consensus 123 ~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~ 192 (212)
.+++.+|..-. -+.|+.+|..|+.++.++|+ +++++.+.+++.....+.+.++++. .....+++-+|.+.
T Consensus 368 ~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~ 447 (538)
T 3ozx_A 368 EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS 447 (538)
T ss_dssp HTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 11222222111 13367788999999999998 5688999999999999999998775 34567777799998
Q ss_pred ccccccccCeEEEEEe
Q psy17138 193 SAKWQDQVHEIWVTFI 208 (212)
Q Consensus 193 e~~~~~~~d~v~~v~~ 208 (212)
++ ..+||+++++.-
T Consensus 448 ~~--~~~aDri~vl~~ 461 (538)
T 3ozx_A 448 IH--DYIADRIIVFKG 461 (538)
T ss_dssp HH--HHHCSEEEEEEE
T ss_pred HH--HHhCCEEEEEeC
Confidence 75 478999999863
No 48
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.26 E-value=1.2e-12 Score=110.64 Aligned_cols=126 Identities=25% Similarity=0.246 Sum_probs=71.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc-C-------CeeeeCCccccccccCCchhHHHHHHHhCCc-cCCCCCccchHh
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL-G-------AGLINCDQLGHRAYDVGTRGNQVVRELFGED-IALPDGSIDRKK 143 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-g-------~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~r~~ 143 (212)
..+|.++||+|+|||||||++++|+++ + ..++++|.... + .. .....|.- .....+.++...
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~----~-~~----~~~~~~~vq~~~~~~~~~~~~ 147 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH----P-NQ----VLKERGLMKKKGFPESYDMHR 147 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC----C-HH----HHHHHTCTTCTTSGGGBCHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC----c-HH----HHHhCCEeecCCCCCCccHHH
Confidence 467999999999999999999999984 3 34556664332 1 11 11122211 000011223222
Q ss_pred HHHHhcCChHHHHHHH-hhhhHHHHHHHHHHHHhh--c-CCCcEEEEEecccccc-----------ccccccCeEEEEEe
Q psy17138 144 LGAIVFSNKDEMNKLN-QAIWPLILAQVKEEIARL--S-ESHKVIVIEAAVLLSA-----------KWQDQVHEIWVTFI 208 (212)
Q Consensus 144 l~~~vf~~~~~~~~~~-~i~~p~~~~~~~~~i~~~--~-~~~~~vvie~~~l~e~-----------~~~~~~d~v~~v~~ 208 (212)
+..++.. +.... .+.+|.+.....+++... . .+.+++++|++++++. ++.++||.+|+|++
T Consensus 148 ~~~~~~~----l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~ 223 (308)
T 1sq5_A 148 LVKFVSD----LKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDA 223 (308)
T ss_dssp HHHHHHH----HTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEEC
T ss_pred HHHHHHH----HhCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEEC
Confidence 2211110 00001 144555544443333211 1 3467999999999976 78889999999999
Q ss_pred CCC
Q psy17138 209 PEQ 211 (212)
Q Consensus 209 ~~~ 211 (212)
|.+
T Consensus 224 ~~~ 226 (308)
T 1sq5_A 224 PED 226 (308)
T ss_dssp CHH
T ss_pred CHH
Confidence 864
No 49
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.25 E-value=1.7e-12 Score=105.93 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=97.8
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeC-------Ccc-----c
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINC-------DQL-----G 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~-------D~i-----~ 110 (212)
.+++.+++|... ....++++++...+|.+++|+||||||||||+++|+++ |...++. +.. .
T Consensus 5 ~~~~l~~~y~~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv 82 (237)
T 2cbz_A 5 TVRNATFTWARS--DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSL 82 (237)
T ss_dssp EEEEEEEESCTT--SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEH
T ss_pred EEEEEEEEeCCC--CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCH
Confidence 345555555311 12356778889999999999999999999999999987 2222221 100 0
Q ss_pred ccc--cc--CCchhHHHHHHH------hCC-----------cc-CCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138 111 HRA--YD--VGTRGNQVVREL------FGE-----------DI-ALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI 166 (212)
Q Consensus 111 ~~~--~~--~~~~~~~~~~~~------~g~-----------~~-~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~ 166 (212)
.+. +. ..........+. ++. .. .-+.|+.+|-.++..+..+|+ +++++.+.++|..
T Consensus 83 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~ 162 (237)
T 2cbz_A 83 RENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 162 (237)
T ss_dssp HHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHH
T ss_pred HHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 000 00 001112222221 111 00 013467778899999999998 5688999999999
Q ss_pred HHHHHHHHH---hhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 167 LAQVKEEIA---RLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 167 ~~~~~~~i~---~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
...+.+.+. +. .....+++.+|.+... ..||+++++.
T Consensus 163 ~~~i~~~l~~~~~~-~~~~tviivtH~~~~~---~~~d~v~~l~ 202 (237)
T 2cbz_A 163 GKHIFENVIGPKGM-LKNKTRILVTHSMSYL---PQVDVIIVMS 202 (237)
T ss_dssp HHHHHHHTTSTTST-TTTSEEEEECSCSTTG---GGSSEEEEEE
T ss_pred HHHHHHHHHHHHhh-cCCCEEEEEecChHHH---HhCCEEEEEe
Confidence 999988884 22 2356788889998653 4699999875
No 50
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.23 E-value=9.4e-12 Score=113.67 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=105.5
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc--------cc-
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG--------HR- 112 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~--------~~- 112 (212)
..+++.+++|... ....++++++..++|++++|+|||||||||++++|.++ |...+++..+. +.
T Consensus 342 i~~~~v~~~y~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 342 VDVKDVTFTYQGK--EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred EEEEEEEEEcCCC--CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 5567777777421 12467889999999999999999999999999999986 44444432210 00
Q ss_pred cccC--------------------C--chhHHHHHHHhCCc------------------cCCCCCccchHhHHHHhcCCh
Q psy17138 113 AYDV--------------------G--TRGNQVVRELFGED------------------IALPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 113 ~~~~--------------------~--~~~~~~~~~~~g~~------------------~~~~~~~~~r~~l~~~vf~~~ 152 (212)
.|.+ . .......++..|.. ..-+.|+.+|-.+++.+..+|
T Consensus 420 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p 499 (582)
T 3b5x_A 420 ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA 499 (582)
T ss_pred EEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 0100 0 01111222222211 001346778889999999999
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+ +++++.+.++|...+.+.+.+.+... .+.+++-+|.+... ..||++++++
T Consensus 500 ~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~---~~~d~i~~l~ 552 (582)
T 3b5x_A 500 PVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLSTI---EQADEILVVD 552 (582)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHH---HhCCEEEEEE
Confidence 8 66899999999999999999887754 56777779988653 3699999885
No 51
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.21 E-value=8.5e-12 Score=101.15 Aligned_cols=131 Identities=15% Similarity=0.097 Sum_probs=80.0
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccccccc----CCch-----hHHHHHHH----h------CCc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYD----VGTR-----GNQVVREL----F------GED 131 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~~----~~~~-----~~~~~~~~----~------g~~ 131 (212)
...++.+|+|+|++||||||+++.|++ +|++++++|.+.+.... .+.. .+...+.. | |..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 91 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQL 91 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEE
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccce
Confidence 466789999999999999999999986 89999999987654321 2211 22222221 1 122
Q ss_pred cCCCCCc-cchHhHH-HHhcCChHHHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeC
Q psy17138 132 IALPDGS-IDRKKLG-AIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIP 209 (212)
Q Consensus 132 ~~~~~~~-~~r~~l~-~~vf~~~~~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~ 209 (212)
++. .|. ..| .+. ..+|+++. ..+.+|.++..+.+.+..... ...+++++.... ..+...||.+|++++|
T Consensus 92 i~~-~G~~~~r-~l~~~~v~~~~~-----~~~~~~~vr~~~~~~~~~~~~-~~~~v~~g~~~~-~~~l~~~d~vi~L~a~ 162 (236)
T 1q3t_A 92 VFV-GDVDITH-PIRENEVTNHVS-----AIAAIPEVREKLVSLQQEIAQ-QGGIVMDGRDIG-TVVLPQAELKIFLVAS 162 (236)
T ss_dssp EEE-TTEEESS-SSCSHHHHHHHH-----HHHTSHHHHHHHHHHHHHHHT-TSCEEEECSSCS-SSSGGGCSEEEEEECC
T ss_pred EeE-CCcCchh-hhccHHHHHHHH-----HHccCHHHHHHHHHHHHHhcc-cCCEEEECCcch-hhhccCCCEEEEEECC
Confidence 221 222 222 111 13444333 257888888887766654432 346777887543 2344578999999998
Q ss_pred CC
Q psy17138 210 EQ 211 (212)
Q Consensus 210 ~~ 211 (212)
++
T Consensus 163 ~e 164 (236)
T 1q3t_A 163 VD 164 (236)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 52
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.21 E-value=1.4e-12 Score=105.92 Aligned_cols=154 Identities=12% Similarity=0.072 Sum_probs=97.2
Q ss_pred ceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC--cc----------c
Q psy17138 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD--QL----------G 110 (212)
Q Consensus 48 ~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D--~i----------~ 110 (212)
.+.+.+++|... ....++++++..++|++++|+||||||||||+++|+++ |...++.. .+ .
T Consensus 8 ~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv 85 (229)
T 2pze_A 8 VMENVTAFWEEG--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTI 85 (229)
T ss_dssp EEEEEEECSSTT--SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCH
T ss_pred EEEEEEEEeCCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCH
Confidence 455555655311 12356778889999999999999999999999999987 22222210 00 0
Q ss_pred cccccC----CchhHHHHHHHhCCc------------------cCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHH
Q psy17138 111 HRAYDV----GTRGNQVVRELFGED------------------IALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLI 166 (212)
Q Consensus 111 ~~~~~~----~~~~~~~~~~~~g~~------------------~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~ 166 (212)
.+.... .........+.++.. ..-+.|+.+|-.++..+.++|+ +++++.+.++|..
T Consensus 86 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~ 165 (229)
T 2pze_A 86 KENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165 (229)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHH
T ss_pred HHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHH
Confidence 010000 001111222222210 0113456778899999999998 5688999999999
Q ss_pred HHHHHHHH-HhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 167 LAQVKEEI-ARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 167 ~~~~~~~i-~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
...+.+.+ .+.. ....+++.+|.+.+. ..||+++++.
T Consensus 166 ~~~i~~~l~~~~~-~~~tvi~vtH~~~~~---~~~d~v~~l~ 203 (229)
T 2pze_A 166 EKEIFESCVCKLM-ANKTRILVTSKMEHL---KKADKILILH 203 (229)
T ss_dssp HHHHHHHCCCCCT-TTSEEEEECCCHHHH---HHCSEEEEEE
T ss_pred HHHHHHHHHHHhh-CCCEEEEEcCChHHH---HhCCEEEEEE
Confidence 99988763 3432 346778889997653 3599999875
No 53
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.21 E-value=8.3e-13 Score=112.36 Aligned_cols=126 Identities=20% Similarity=0.217 Sum_probs=68.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc-C-------CeeeeCCccccccccCCchhHHHHHHHhCCcc-CCCCCccchHh
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL-G-------AGLINCDQLGHRAYDVGTRGNQVVRELFGEDI-ALPDGSIDRKK 143 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-g-------~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~r~~ 143 (212)
..+++++||+|||||||||++++|.++ . ..++..|.. .... .. ....+... ......++...
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f-----~~~~---~~-l~~~~~~~~~g~P~~~D~~~ 159 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF-----LYSN---AK-LEKQGLMKRKGFPESYDMPS 159 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG-----BCCH---HH-HHHTTCGGGTTSGGGBCHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc-----ccch---hh-hhhHHHHhhccCcccccHHH
Confidence 556899999999999999999999875 2 233444431 1111 11 11111100 00111233332
Q ss_pred HHHHhcCChHHHHHHH-hhhhHHHHHHHHHHHHhh--c-CCCcEEEEEeccccccc-----------cccccCeEEEEEe
Q psy17138 144 LGAIVFSNKDEMNKLN-QAIWPLILAQVKEEIARL--S-ESHKVIVIEAAVLLSAK-----------WQDQVHEIWVTFI 208 (212)
Q Consensus 144 l~~~vf~~~~~~~~~~-~i~~p~~~~~~~~~i~~~--~-~~~~~vvie~~~l~e~~-----------~~~~~d~v~~v~~ 208 (212)
+...+ ..+.... .+..|.+.....+++... . ...+++++|+.++++.+ +.++||.+|+|++
T Consensus 160 l~~~L----~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda 235 (321)
T 3tqc_A 160 LLRVL----NAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDA 235 (321)
T ss_dssp HHHHH----HHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEEC
T ss_pred HHHHH----HhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEEC
Confidence 22111 1111111 233344433333322111 1 45689999999998755 7789999999999
Q ss_pred CCC
Q psy17138 209 PEQ 211 (212)
Q Consensus 209 ~~~ 211 (212)
|++
T Consensus 236 ~~d 238 (321)
T 3tqc_A 236 QAQ 238 (321)
T ss_dssp CHH
T ss_pred CHH
Confidence 965
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.3e-11 Score=113.28 Aligned_cols=134 Identities=16% Similarity=0.137 Sum_probs=94.5
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCe-----------eeeCCccc--------ccc-------cc-----
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL-----GAG-----------LINCDQLG--------HRA-------YD----- 115 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~-----------vi~~D~i~--------~~~-------~~----- 115 (212)
.+.+|+++||+||||||||||+++|+++ |.. ++....+. .+. |.
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 4778999999999999999999999986 221 11111100 000 00
Q ss_pred ------------------CCchhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 116 ------------------VGTRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 116 ------------------~~~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
........+++.+|.... -+.|+.+|..|+..+.++|+ +++++.+.++|....
T Consensus 179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~ 258 (608)
T 3j16_B 179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRL 258 (608)
T ss_dssp HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHH
T ss_pred hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHH
Confidence 000223445566665432 13367788899999999998 568899999999999
Q ss_pred HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.++++......+++-+|.+.+. ..+||++++++
T Consensus 259 ~l~~~l~~l~~~g~tvi~vtHdl~~~--~~~~drv~vl~ 295 (608)
T 3j16_B 259 NAAQIIRSLLAPTKYVICVEHDLSVL--DYLSDFVCIIY 295 (608)
T ss_dssp HHHHHHHGGGTTTCEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHH--HHhCCEEEEEe
Confidence 99999988874456777779999775 57899999885
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.18 E-value=1.5e-11 Score=111.45 Aligned_cols=132 Identities=18% Similarity=0.237 Sum_probs=92.9
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc-----CCe-----------eeeCCccc--------------ccc-c-------
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL-----GAG-----------LINCDQLG--------------HRA-Y------- 114 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~-----------vi~~D~i~--------------~~~-~------- 114 (212)
+.+|+++||+||||||||||+|+|+++ |.. .++...+. ... +
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 677999999999999999999999986 221 11111110 000 0
Q ss_pred cCC-----------chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH
Q psy17138 115 DVG-----------TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI 174 (212)
Q Consensus 115 ~~~-----------~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i 174 (212)
..+ ......+.+.+|..... +.|+.+|..|+..+.++|+ +++++.+.++|.....+.+.+
T Consensus 102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l 181 (538)
T 3ozx_A 102 LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI 181 (538)
T ss_dssp CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 000 01234455666654321 2367788899999999998 568899999999999999999
Q ss_pred HhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 175 ARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 175 ~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++.. ...+++-+|.+.+. ..+||+++++.
T Consensus 182 ~~l~~-g~tii~vsHdl~~~--~~~~d~i~vl~ 211 (538)
T 3ozx_A 182 RELLK-NKYVIVVDHDLIVL--DYLTDLIHIIY 211 (538)
T ss_dssp HHHCT-TSEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred HHHhC-CCEEEEEEeChHHH--HhhCCEEEEec
Confidence 88765 56777779999764 57899998875
No 56
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.18 E-value=1.7e-11 Score=97.78 Aligned_cols=128 Identities=17% Similarity=0.149 Sum_probs=76.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccccc----ccCCc-hhHHHHHHH----h------CCccCCCCCcc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRA----YDVGT-RGNQVVREL----F------GEDIALPDGSI 139 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~----~~~~~-~~~~~~~~~----~------g~~~~~~~~~~ 139 (212)
+.+|+|+|++||||||+++.|+. +|++++++|.+.+.. ...+. ......... | |..++. +|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~-~g~~ 81 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVIL-DNED 81 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEE-TTEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEe-CCcc
Confidence 56899999999999999999986 799999999876643 22221 111111111 2 323321 2322
Q ss_pred chHhHHHHhcCChHHHHHHHh-hhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 140 DRKKLGAIVFSNKDEMNKLNQ-AIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 140 ~r~~l~~~vf~~~~~~~~~~~-i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
.++. +.++......+. ..||.+.+.+......... ...++++++.+ +..+...+|.+|++++|.+
T Consensus 82 ~~~~-----~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~-~~~~vi~g~~~-~~~~~~~~~~vi~l~a~~e 147 (219)
T 2h92_A 82 VTDF-----LRNNDVTQHVSYVASKEPVRSFAVKKQKELAA-EKGIVMDGRDI-GTVVLPDADLKVYMIASVE 147 (219)
T ss_dssp CGGG-----SSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHT-TCCEEEEESSC-CCCCCTTCSEEEEEECCHH
T ss_pred chhh-----cCcHHHHHHHHHhccCHHHHHHHHHHHHHhcc-CCcEEEEcCCc-cceecCCCCEEEEEECCHH
Confidence 2211 233333333333 5788887776554433322 23577888755 3345567899999999875
No 57
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.18 E-value=2.5e-12 Score=102.06 Aligned_cols=128 Identities=18% Similarity=0.197 Sum_probs=68.1
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc-C--CeeeeCCccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL-G--AGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVF 149 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l-g--~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf 149 (212)
..+|.++||+|+|||||||++++|+++ + ..+++.|...+...... .... . .+. +...+..++..+...+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~--~~~~-~-~~~---~~~~~~~~~~~~~~~l- 74 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLP--LEER-L-RVN---YDHPDAFDLALYLEHA- 74 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSC--HHHH-H-HSC---TTSGGGBCHHHHHHHH-
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCccccc--HHHh-c-CCC---CCChhhhhHHHHHHHH-
Confidence 356899999999999999999999985 7 77788776543321111 1111 1 111 1112233443333222
Q ss_pred CChHHHHHHHhhhhHHHHHHHHHHHHhh-c-CCCcEEEEEeccccc-cccccccCeEEEEEeCCC
Q psy17138 150 SNKDEMNKLNQAIWPLILAQVKEEIARL-S-ESHKVIVIEAAVLLS-AKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 150 ~~~~~~~~~~~i~~p~~~~~~~~~i~~~-~-~~~~~vvie~~~l~e-~~~~~~~d~v~~v~~~~~ 211 (212)
..+...+.+.+|........+..+. . ....++++++++++. ..+..+||.+|+++++.+
T Consensus 75 ---~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~ 136 (211)
T 3asz_A 75 ---QALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD 136 (211)
T ss_dssp ---HHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred ---HHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence 1111111122221111110000000 1 345699999999884 456779999999999753
No 58
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.18 E-value=6.9e-12 Score=102.33 Aligned_cols=39 Identities=36% Similarity=0.543 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH-cCCe
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET-LGAG 102 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~ 102 (212)
..++++++...+|.++||+|||||||||++++|++ +|..
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 45777889999999999999999999999999998 4765
No 59
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.17 E-value=3.2e-11 Score=109.26 Aligned_cols=140 Identities=20% Similarity=0.208 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCe---------eeeCCccc--------c--cc-cc----
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAG---------LINCDQLG--------H--RA-YD---- 115 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~---------vi~~D~i~--------~--~~-~~---- 115 (212)
.+.+++ ...+|+++||+|+||||||||+|+|+++ |.. .+++..+. . .+ +.
T Consensus 37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~ 115 (538)
T 1yqt_A 37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV 115 (538)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCG
T ss_pred cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhh
Confidence 355677 7899999999999999999999999986 221 01111000 0 00 00
Q ss_pred ---C----C-----------chhHHHHHHHhCCccCC-------CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 116 ---V----G-----------TRGNQVVRELFGEDIAL-------PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 116 ---~----~-----------~~~~~~~~~~~g~~~~~-------~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
+ . ......+++.+|..... +.|+.+|..|+..+.++|+ +++++.+.++|....
T Consensus 116 ~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~ 195 (538)
T 1yqt_A 116 DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRL 195 (538)
T ss_dssp GGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred hhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 0 0 01234455666654321 2367788899999999998 568899999999999
Q ss_pred HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.++++......+++-+|.+.+. ..+||+++++.
T Consensus 196 ~l~~~L~~l~~~g~tvi~vsHd~~~~--~~~~dri~vl~ 232 (538)
T 1yqt_A 196 NAARAIRRLSEEGKSVLVVEHDLAVL--DYLSDIIHVVY 232 (538)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHH--HHhCCEEEEEc
Confidence 99988887753355677779998764 56899999875
No 60
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.17 E-value=2.4e-12 Score=117.96 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=104.4
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------- 110 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------- 110 (212)
...+++.+++|.. ....++++++..++|++++|+|||||||||++++|.++ |...+++..+.
T Consensus 354 ~i~~~~v~~~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 354 EIEFKNVWFSYDK---KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp CEEEEEEECCSSS---SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEEEEEECCC---CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhc
Confidence 3456777777642 22467889999999999999999999999999999987 33344432221
Q ss_pred -----cccccCCchh---------------HHHH---------HHHhCCcc---------CCCCCccchHhHHHHhcCCh
Q psy17138 111 -----HRAYDVGTRG---------------NQVV---------RELFGEDI---------ALPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 111 -----~~~~~~~~~~---------------~~~~---------~~~~g~~~---------~~~~~~~~r~~l~~~vf~~~ 152 (212)
++.+...... .... +..+.... .-+.|+.+|-.+++.+.++|
T Consensus 431 i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p 510 (598)
T 3qf4_B 431 IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP 510 (598)
T ss_dssp EEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCC
T ss_pred eEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 1111000011 1111 11111000 01446778889999999999
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+ +++++.+.++|.....+.+.+.+... .+++++-+|.+... ..||++++++
T Consensus 511 ~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~---~~~d~i~~l~ 563 (598)
T 3qf4_B 511 KILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAHRLNTI---KNADLIIVLR 563 (598)
T ss_dssp SEEEECCCCTTCCHHHHHHHHHHHHHHHT-TSEEEEESCCTTHH---HHCSEEEEEC
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHH---HcCCEEEEEE
Confidence 8 56888999999999999988887753 56777779998764 4599999885
No 61
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.17 E-value=8.9e-12 Score=114.34 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=97.2
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCe---------eeeCCccc--------c--cc-cc----
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAG---------LINCDQLG--------H--RA-YD---- 115 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~---------vi~~D~i~--------~--~~-~~---- 115 (212)
.+.+++ ...+|+++||+|+||||||||+++|+++ |.. .+++..+. . .. +.
T Consensus 107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~ 185 (607)
T 3bk7_A 107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV 185 (607)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCG
T ss_pred eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechh
Confidence 455667 7899999999999999999999999986 321 11111100 0 00 00
Q ss_pred ---C----C-----------chhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHH
Q psy17138 116 ---V----G-----------TRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILA 168 (212)
Q Consensus 116 ---~----~-----------~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~ 168 (212)
+ . ......+++.+|.... -+.|+.+|..|+..+.++|+ +++++.+.++|....
T Consensus 186 ~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~ 265 (607)
T 3bk7_A 186 DLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRL 265 (607)
T ss_dssp GGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHH
T ss_pred hhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 0 0 0123445556664321 13467789999999999998 568899999999999
Q ss_pred HHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 169 QVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 169 ~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+.+.++++......+++-+|.+.+. ..+||+++++.
T Consensus 266 ~l~~~L~~l~~~g~tvIivsHdl~~~--~~~adri~vl~ 302 (607)
T 3bk7_A 266 KVARVIRRLANEGKAVLVVEHDLAVL--DYLSDVIHVVY 302 (607)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHH--HHHCSEEEEEE
T ss_pred HHHHHHHHHHhcCCEEEEEecChHHH--HhhCCEEEEEC
Confidence 99999988753356777779998764 46899999885
No 62
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.15 E-value=1.2e-11 Score=113.45 Aligned_cols=137 Identities=16% Similarity=0.095 Sum_probs=93.3
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeee-------eCCc------cccccccC-------CchhHHH
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLI-------NCDQ------LGHRAYDV-------GTRGNQV 123 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi-------~~D~------i~~~~~~~-------~~~~~~~ 123 (212)
+++...+|+++||+||||||||||+++|+++ |...+ .-+. ...++... .......
T Consensus 375 ~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 454 (607)
T 3bk7_A 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE 454 (607)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHH
Confidence 4455678999999999999999999999986 22111 1110 00000000 0011223
Q ss_pred HHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccc
Q psy17138 124 VRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLS 193 (212)
Q Consensus 124 ~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e 193 (212)
+++.+|..-. -+.|+.+|..|+..+.++|+ +++++.+.+++.....+.+.++++. .....+++-+|.+.+
T Consensus 455 ~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~ 534 (607)
T 3bk7_A 455 LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 534 (607)
T ss_dssp THHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 3445554321 13467778899999999998 5688999999999999999998764 334577777999877
Q ss_pred cccccccCeEEEEE
Q psy17138 194 AKWQDQVHEIWVTF 207 (212)
Q Consensus 194 ~~~~~~~d~v~~v~ 207 (212)
+ ..+||+++++.
T Consensus 535 ~--~~~adrv~vl~ 546 (607)
T 3bk7_A 535 I--DYVSDRLIVFE 546 (607)
T ss_dssp H--HHHCSEEEEEE
T ss_pred H--HHhCCEEEEEc
Confidence 5 46899999986
No 63
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.15 E-value=3.5e-12 Score=107.13 Aligned_cols=140 Identities=11% Similarity=0.080 Sum_probs=91.2
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCC-----eeeeC-------Cc-----cccccccC---CchhHHH
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGA-----GLINC-------DQ-----LGHRAYDV---GTRGNQV 123 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~-----~vi~~-------D~-----i~~~~~~~---~~~~~~~ 123 (212)
..++++++...+|.+++|+||||||||||+++|+++-. ..++. +. ...+.... .......
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 131 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRS 131 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHH
Confidence 45677889999999999999999999999999998722 22211 00 00011100 0001111
Q ss_pred HHHHhCCc------------------cCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHH-HhhcCCCc
Q psy17138 124 VRELFGED------------------IALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEI-ARLSESHK 182 (212)
Q Consensus 124 ~~~~~g~~------------------~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i-~~~~~~~~ 182 (212)
....++.. ..-+.|+.+|-.++..+.++|+ +++++.+.++|.....+.+.+ .+.. ...
T Consensus 132 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~ 210 (290)
T 2bbs_A 132 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANK 210 (290)
T ss_dssp HHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTS
T ss_pred HHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCC
Confidence 22222210 0113467788899999999998 568899999999999998763 3332 346
Q ss_pred EEEEEeccccccccccccCeEEEEE
Q psy17138 183 VIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 183 ~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
.+++-+|.+... ..||+++++.
T Consensus 211 tviivtHd~~~~---~~~d~i~~l~ 232 (290)
T 2bbs_A 211 TRILVTSKMEHL---KKADKILILH 232 (290)
T ss_dssp EEEEECCCHHHH---HHSSEEEEEE
T ss_pred EEEEEecCHHHH---HcCCEEEEEE
Confidence 778889998653 3699999875
No 64
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.14 E-value=1.9e-12 Score=118.42 Aligned_cols=155 Identities=12% Similarity=0.096 Sum_probs=104.0
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcccc---------c
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGH---------R 112 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~---------~ 112 (212)
..+.+.+++|... ....++++++..++|++++|+|||||||||++++|.++ |...+++..+.. -
T Consensus 342 i~~~~v~~~y~~~--~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 342 VSFENVEFRYFEN--TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp EEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred EEEEEEEEEcCCC--CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 4566666666421 22456778899999999999999999999999999986 333444332210 0
Q ss_pred cccCC---------------------chhHHHHHHHhC-----------Cc------c-CCCCCccchHhHHHHhcCChH
Q psy17138 113 AYDVG---------------------TRGNQVVRELFG-----------ED------I-ALPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 113 ~~~~~---------------------~~~~~~~~~~~g-----------~~------~-~~~~~~~~r~~l~~~vf~~~~ 153 (212)
.|.++ ........+..+ .+ . .-+.|+.+|-.+++.+..+|+
T Consensus 420 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ 499 (587)
T 3qf4_A 420 SAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499 (587)
T ss_dssp EEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCS
T ss_pred EEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence 01110 001111111111 10 0 013467789999999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.++|...+.+.+.+++.. ..+++++-+|.+... ..||++++++
T Consensus 500 illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~---~~~d~i~vl~ 551 (587)
T 3qf4_A 500 VLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTA---LLADKILVLH 551 (587)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHH---TTSSEEEEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHH---HhCCEEEEEE
Confidence 5688899999999999999888764 456777779998654 4799999885
No 65
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.13 E-value=4e-11 Score=98.41 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=72.8
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccc--------cC-CchhHHHHHHHhCCccCCCCCccch
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAY--------DV-GTRGNQVVRELFGEDIALPDGSIDR 141 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~--------~~-~~~~~~~~~~~~g~~~~~~~~~~~r 141 (212)
...++.+|+|+|||||||||++++|+ .||+.+++++.+.+.+. .. .......+...+|..... .+..++
T Consensus 23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (252)
T 4e22_A 23 MTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS-QNGQLQ 101 (252)
T ss_dssp CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE-ETTEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec-CCCCce
Confidence 34568999999999999999999997 56999888776542211 00 111122222222221100 000000
Q ss_pred HhHHHHhcCChHHHHHHHh-----hhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 142 KKLGAIVFSNKDEMNKLNQ-----AIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 142 ~~l~~~vf~~~~~~~~~~~-----i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
..+....+.+.-....... ..+|.+++.+.+..+.... ..-+++++..+... +...+|.+||++||.+
T Consensus 102 ~~l~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~-~~~~V~~gr~~~~~-v~~~~~~~ifl~A~~e 174 (252)
T 4e22_A 102 VILEGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFRE-APGLIADGRDMGTI-VFPDAPVKIFLDASSQ 174 (252)
T ss_dssp EEETTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCC-SSCEEEEESSCCCC-CSTTCSEEEEEECCHH
T ss_pred EEECCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh-CCCEEEEeceecee-ecCCCCEEEEEECCHH
Confidence 0000011111111111111 2467787777776666543 33577788766432 2234789999999875
No 66
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.12 E-value=1.5e-11 Score=112.34 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=103.8
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..+.+.+++|... ....++++++..++|++++|+||||||||||+++|.++ |...+++..+.
T Consensus 342 i~~~~v~~~y~~~--~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 342 LEFRNVTFTYPGR--EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp EEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred EEEEEEEEEcCCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 4566776766421 12356778899999999999999999999999999987 33334332210
Q ss_pred ----ccc------------c-c-CC--chhHHHHHHHhCCc------------------cCCCCCccchHhHHHHhcCCh
Q psy17138 111 ----HRA------------Y-D-VG--TRGNQVVRELFGED------------------IALPDGSIDRKKLGAIVFSNK 152 (212)
Q Consensus 111 ----~~~------------~-~-~~--~~~~~~~~~~~g~~------------------~~~~~~~~~r~~l~~~vf~~~ 152 (212)
++. + . +. .......++..+.. ..-+.|+.+|-.+++.+.++|
T Consensus 420 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p 499 (582)
T 3b60_A 420 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_dssp EEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred eEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 000 0 0 00 01111222222210 001346778889999999999
Q ss_pred H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 153 D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 153 ~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+ +++++.+.++|...+.+.+.+.+... .+.+++-+|.+... ..||++++++
T Consensus 500 ~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~---~~~d~i~~l~ 552 (582)
T 3b60_A 500 PILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTI---EQADEIVVVE 552 (582)
T ss_dssp SEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGT---TTCSEEEEEE
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHH---HhCCEEEEEE
Confidence 8 66889999999999999999887754 56777779998654 3699999885
No 67
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.12 E-value=1.7e-11 Score=111.97 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=103.0
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..+++.+++|.. .....++++++..++|++++|+|||||||||++++|.++ |...+++..+.
T Consensus 340 i~~~~v~~~y~~--~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 340 IDIDHVSFQYND--NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp EEEEEEEECSCS--SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred EEEEEEEEEcCC--CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 456666666642 122456778899999999999999999999999999986 33334432211
Q ss_pred ----cccccCCc---------------hhHHHHHHHhCCc-----------c-------CCCCCccchHhHHHHhcCChH
Q psy17138 111 ----HRAYDVGT---------------RGNQVVRELFGED-----------I-------ALPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 111 ----~~~~~~~~---------------~~~~~~~~~~g~~-----------~-------~~~~~~~~r~~l~~~vf~~~~ 153 (212)
++.+.... .......+..+.. - .-+.|+.+|-.+++.+.++|+
T Consensus 418 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ 497 (578)
T 4a82_A 418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497 (578)
T ss_dssp EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred EEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 00000000 0111112211110 0 013467788899999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.++|...+.+.+.+.+... .+++++-+|.+... ..||++++++
T Consensus 498 illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~---~~~d~i~~l~ 549 (578)
T 4a82_A 498 ILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLSTI---THADKIVVIE 549 (578)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGT---TTCSEEEEEE
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHH---HcCCEEEEEE
Confidence 56888999999999999888877753 46777779998764 3599999885
No 68
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.12 E-value=1.6e-11 Score=96.66 Aligned_cols=111 Identities=15% Similarity=0.263 Sum_probs=62.8
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCC-ccccccccCCchhHHHHHHHhCCccCCCCCccchHhHHHHhcCC
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCD-QLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVFSN 151 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D-~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~~~vf~~ 151 (212)
..+|.+++|+|+|||||||++++|+++..+ +.+ .+.+....+. .+..++ . .++|++
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~--~~~~~i~~~~~~~~------------------~~~~~~--~-~~~~~~ 59 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPST--SYKYSISMTTRQMR------------------EGEVDG--V-DYFFKT 59 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTC--CEECCCCEECSCCC------------------TTCCBT--T-TBEECC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCC--CeEEecccccCCCC------------------CCccCC--C-ceEEcC
Confidence 456899999999999999999999987533 111 1111111111 011111 1 366777
Q ss_pred hHHHHHH----HhhhhHHH--------HHHHHHHHHhhcCCCcEEEEEecccccccccccc-CeEEEEEeCC
Q psy17138 152 KDEMNKL----NQAIWPLI--------LAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQV-HEIWVTFIPE 210 (212)
Q Consensus 152 ~~~~~~~----~~i~~p~~--------~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~-d~v~~v~~~~ 210 (212)
+..+..+ +.+.++.+ ...+...+. ....++++.++.....+.+.| |.++++.+|+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~l~----~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~ 127 (207)
T 2j41_A 60 RDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMD----EGHDVFLEIEVEGAKQVRKKFPDALFIFLAPP 127 (207)
T ss_dssp HHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHH----TTCEEEEECCGGGHHHHHHHCTTSEEEEEECC
T ss_pred HHHHHHHHHcCCeEEEEeECCeecCCCHHHHHHHHH----cCCeEEEEECHHHHHHHHHhcCCeEEEEEECC
Confidence 6654443 11222211 222333232 246899999887766666667 8677776653
No 69
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.11 E-value=2.6e-11 Score=111.18 Aligned_cols=140 Identities=14% Similarity=0.042 Sum_probs=93.5
Q ss_pred CCCCCCCCCCC-----eEEEEecCCCCcHHHHHHHHHHc-----CCe-------eeeCCcc------ccccc----cC--
Q psy17138 66 VQPKPHLSPYP-----YIIGLTGGIASGKSTIAKYLETL-----GAG-------LINCDQL------GHRAY----DV-- 116 (212)
Q Consensus 66 ~~~~~~~~~~~-----~iigl~G~~GsGKSTl~~~L~~l-----g~~-------vi~~D~i------~~~~~----~~-- 116 (212)
.+++++...+| +++||+|+||||||||+++|+++ |.. ++.-+.. ..+++ ..
T Consensus 363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~ 442 (608)
T 3j16_B 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQF 442 (608)
T ss_dssp CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTT
T ss_pred cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhccc
Confidence 34555655556 78999999999999999999987 211 1110000 00000 00
Q ss_pred -CchhHHHHHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEE
Q psy17138 117 -GTRGNQVVRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIV 185 (212)
Q Consensus 117 -~~~~~~~~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vv 185 (212)
.......+++.+|..-. -+.|+.+|..|+.++.++|+ +++++.+.+++.....+.+.++++. .....++
T Consensus 443 ~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvi 522 (608)
T 3j16_B 443 LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522 (608)
T ss_dssp TSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred ccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 00112334445553221 13467789999999999998 5688999999999999998888764 3345777
Q ss_pred EEeccccccccccccCeEEEEE
Q psy17138 186 IEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 186 ie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+-+|.+.++ ..+||+++++.
T Consensus 523 ivtHdl~~~--~~~aDrvivl~ 542 (608)
T 3j16_B 523 IVEHDFIMA--TYLADKVIVFE 542 (608)
T ss_dssp EECSCHHHH--HHHCSEEEECE
T ss_pred EEeCCHHHH--HHhCCEEEEEe
Confidence 779999875 46899999876
No 70
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.09 E-value=1.5e-11 Score=111.46 Aligned_cols=137 Identities=17% Similarity=0.126 Sum_probs=90.1
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCC--ccccccc-cCCchh-----------------HHH
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCD--QLGHRAY-DVGTRG-----------------NQV 123 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D--~i~~~~~-~~~~~~-----------------~~~ 123 (212)
+++...+|+++||+|+||||||||+++|.++ |...+... .+..+.. .+.... ...
T Consensus 305 ~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 384 (538)
T 1yqt_A 305 EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTE 384 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHH
T ss_pred CccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHH
Confidence 4455678999999999999999999999986 22111000 0000000 011000 111
Q ss_pred HHHHhCCccC-------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhc-CCCcEEEEEeccccc
Q psy17138 124 VRELFGEDIA-------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLS-ESHKVIVIEAAVLLS 193 (212)
Q Consensus 124 ~~~~~g~~~~-------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~-~~~~~vvie~~~l~e 193 (212)
++..+|..-. -+.|+.+|..|+.++.++|+ +++++.+.+++.....+.+.++++. .....+++-+|.+.+
T Consensus 385 ~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~ 464 (538)
T 1yqt_A 385 LLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 464 (538)
T ss_dssp TTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 1222232111 12356778899999999998 5688999999999999999988764 334567777999877
Q ss_pred cccccccCeEEEEE
Q psy17138 194 AKWQDQVHEIWVTF 207 (212)
Q Consensus 194 ~~~~~~~d~v~~v~ 207 (212)
+ ..+||+++++.
T Consensus 465 ~--~~~~drv~vl~ 476 (538)
T 1yqt_A 465 I--DYVSDRLMVFE 476 (538)
T ss_dssp H--HHHCSEEEEEE
T ss_pred H--HHhCCEEEEEe
Confidence 5 47899999986
No 71
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.09 E-value=1.7e-11 Score=102.82 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=30.1
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH-cC-----CeeeeCCcccc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET-LG-----AGLINCDQLGH 111 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg-----~~vi~~D~i~~ 111 (212)
.++.+|||+|++||||||+++.|+. +| +.++++|.+.+
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 4578999999999999999999986 56 78899998765
No 72
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.09 E-value=1.1e-11 Score=113.46 Aligned_cols=156 Identities=18% Similarity=0.160 Sum_probs=104.2
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..+++.+++|.... ....++++++..++|++++|+||||||||||+++|.++ |...+++..+.
T Consensus 342 i~~~~v~~~y~~~~-~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i 420 (595)
T 2yl4_A 342 LEFKNVHFAYPARP-EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKI 420 (595)
T ss_dssp EEEEEEEEECSSCT-TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSE
T ss_pred EEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhce
Confidence 55667777664210 12356778899999999999999999999999999987 33333332110
Q ss_pred ----cc----------c--c-cC-----CchhHHHHHHHhCCc------------------cCCCCCccchHhHHHHhcC
Q psy17138 111 ----HR----------A--Y-DV-----GTRGNQVVRELFGED------------------IALPDGSIDRKKLGAIVFS 150 (212)
Q Consensus 111 ----~~----------~--~-~~-----~~~~~~~~~~~~g~~------------------~~~~~~~~~r~~l~~~vf~ 150 (212)
++ . + .+ ........++..|.. ..-+.|+.+|-.+++.+.+
T Consensus 421 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~ 500 (595)
T 2yl4_A 421 GTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500 (595)
T ss_dssp EEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc
Confidence 00 0 0 00 011122233333310 0013467788899999999
Q ss_pred ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 151 NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+|+ +++++.+.++|...+.+.+.+.+... .+.+++-+|.+... ..||++++++
T Consensus 501 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~---~~~d~i~~l~ 555 (595)
T 2yl4_A 501 NPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTI---KNANMVAVLD 555 (595)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHH---HHSSEEEEEE
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH---HcCCEEEEEE
Confidence 998 56888999999999999999887754 46777779988653 3599999875
No 73
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.06 E-value=1.6e-10 Score=91.09 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=35.9
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA 113 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~ 113 (212)
.+.++.+|+|+|++||||||+++.|+ .+|+.++++|.+.+..
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~ 53 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAE 53 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHH
Confidence 46678899999999999999999997 6899999988765544
No 74
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.04 E-value=2.4e-11 Score=119.77 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=103.0
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..+++..++|.... ....++++++..++|+++||+|+||||||||+++|.++ |...+++..+.
T Consensus 1031 i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 1109 (1284)
T 3g5u_A 1031 VQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL 1109 (1284)
T ss_dssp EEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSC
T ss_pred EEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhce
Confidence 45666666664221 22467889999999999999999999999999999987 33334432221
Q ss_pred ----cc----------cc---cCC----chhHHHHHHHhC---------Ccc---------CCCCCccchHhHHHHhcCC
Q psy17138 111 ----HR----------AY---DVG----TRGNQVVRELFG---------EDI---------ALPDGSIDRKKLGAIVFSN 151 (212)
Q Consensus 111 ----~~----------~~---~~~----~~~~~~~~~~~g---------~~~---------~~~~~~~~r~~l~~~vf~~ 151 (212)
.+ +. .+. ........+..+ ... .-+.|+.+|-.+++.+..+
T Consensus 1110 ~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~ 1189 (1284)
T 3g5u_A 1110 GIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189 (1284)
T ss_dssp EEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred EEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcC
Confidence 00 00 000 000111111111 000 0134677888999999999
Q ss_pred hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 152 KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 152 ~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
|+ +++++++.+++...+.+.+.+++... .+.+++-+|.+... ..||++++++
T Consensus 1190 p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~-~~tvi~isH~l~~i---~~~dri~vl~ 1243 (1284)
T 3g5u_A 1190 PHILLLDEATSALDTESEKVVQEALDKARE-GRTCIVIAHRLSTI---QNADLIVVIQ 1243 (1284)
T ss_dssp CSSEEEESCSSSCCHHHHHHHHHHHHHHSS-SSCEEEECSCTTGG---GSCSEEEEEE
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhCC-CCEEEEEecCHHHH---HcCCEEEEEE
Confidence 98 55788999999999999998877643 45666669998764 3599999886
No 75
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.00 E-value=3.9e-10 Score=87.57 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=33.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAY 114 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~ 114 (212)
++.+|+|+|++||||||+++.|+ .+|+++++.|.+.+...
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~ 42 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDER 42 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHH
Confidence 36799999999999999999997 47999999887655443
No 76
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.98 E-value=1.7e-10 Score=110.38 Aligned_cols=138 Identities=14% Similarity=0.038 Sum_probs=96.2
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc---CCe--------eeeCC--cc-----cccccc---CC-chhHH
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL---GAG--------LINCD--QL-----GHRAYD---VG-TRGNQ 122 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l---g~~--------vi~~D--~i-----~~~~~~---~~-~~~~~ 122 (212)
.++++++...+|.+++|+|+||||||||+|+|++- |.. ++.-+ .. ..+... .+ .....
T Consensus 450 iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~ 529 (986)
T 2iw3_A 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIK 529 (986)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHH
T ss_pred eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHH
Confidence 56778899999999999999999999999999851 111 00000 00 000000 00 11234
Q ss_pred HHHHHhCCc--cC------CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecccc
Q psy17138 123 VVRELFGED--IA------LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLL 192 (212)
Q Consensus 123 ~~~~~~g~~--~~------~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~ 192 (212)
..++.+|.. .. -+.|+.+|..|+..+..+|+ +++++.+.+++.....+.+.+.+ . ...+++-+|.+.
T Consensus 530 ~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~-g~tvIivSHdl~ 606 (986)
T 2iw3_A 530 DKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--C-GITSITISHDSV 606 (986)
T ss_dssp HHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--S-CSEEEEECSCHH
T ss_pred HHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--C-CCEEEEEECCHH
Confidence 455666752 11 14567789999999999998 56889999999999999999887 2 457777799987
Q ss_pred ccccccccCeEEEEE
Q psy17138 193 SAKWQDQVHEIWVTF 207 (212)
Q Consensus 193 e~~~~~~~d~v~~v~ 207 (212)
+. ..+||+++++.
T Consensus 607 ~l--~~~adrii~L~ 619 (986)
T 2iw3_A 607 FL--DNVCEYIINYE 619 (986)
T ss_dssp HH--HHHCSEEEEEE
T ss_pred HH--HHhCCEEEEEE
Confidence 64 57899999874
No 77
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.96 E-value=7.7e-10 Score=85.77 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=33.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAY 114 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~ 114 (212)
.+.+|+|+|++||||||+++.|+. +|+.+++.|.+.+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~ 45 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQ 45 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHH
Confidence 467999999999999999999985 7999999886655443
No 78
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.96 E-value=5.1e-10 Score=88.29 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=31.4
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQL 109 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i 109 (212)
..+|.+++|+|+|||||||+++.|++ +|..++++|.+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~ 63 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAF 63 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEccccc
Confidence 34689999999999999999999986 59998888764
No 79
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.95 E-value=6.3e-10 Score=94.25 Aligned_cols=33 Identities=9% Similarity=0.023 Sum_probs=28.5
Q ss_pred CCCcEEEEEeccccc----cccccccCeEEEEEeCCC
Q psy17138 179 ESHKVIVIEAAVLLS----AKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 179 ~~~~~vvie~~~l~e----~~~~~~~d~v~~v~~~~~ 211 (212)
.+.+++++|++++++ ..+.+++|.+|+|++|.+
T Consensus 193 ~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~ 229 (312)
T 3aez_A 193 RHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIE 229 (312)
T ss_dssp CSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHH
T ss_pred cCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHH
Confidence 456899999999986 578899999999999864
No 80
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.94 E-value=1.2e-09 Score=86.90 Aligned_cols=52 Identities=17% Similarity=0.108 Sum_probs=39.6
Q ss_pred EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccccCCchhHHHHHHHhC
Q psy17138 78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAYDVGTRGNQVVRELFG 129 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g 129 (212)
.|+|+|++||||||+++.|+ .+|+.++++|.+.++...++......+...++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~ 54 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYID 54 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 58999999999999999995 68999999988777765555444444444443
No 81
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.93 E-value=2.7e-11 Score=93.68 Aligned_cols=125 Identities=18% Similarity=0.006 Sum_probs=70.9
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCccccccccCC------chhHHH------HHHHhCCccC---
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVG------TRGNQV------VRELFGEDIA--- 133 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i~~~~~~~~------~~~~~~------~~~~~g~~~~--- 133 (212)
+++..++|++++|+|+|||||||+++++.. |..+++.|.+...+.... ...++. .....|....
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~-~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 80 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFK-PTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDA 80 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSC-GGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEES
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHcc-CCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEEC
Confidence 345677899999999999999999996542 334444443321111111 001111 1112232211
Q ss_pred ---CCCCccchHhHHHHhcCChH--HHHHHHhhhhHH----------------HHHHHHHHHHhhcCCCcEEEEEecccc
Q psy17138 134 ---LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL----------------ILAQVKEEIARLSESHKVIVIEAAVLL 192 (212)
Q Consensus 134 ---~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~----------------~~~~~~~~i~~~~~~~~~vvie~~~l~ 192 (212)
...+..+|..++..+..+|. +++++.+.++|. ....+.+.++++......+++.+|.+.
T Consensus 81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 11234456678777777776 446677777777 446666666555422445666689887
Q ss_pred cc
Q psy17138 193 SA 194 (212)
Q Consensus 193 e~ 194 (212)
++
T Consensus 161 ~~ 162 (171)
T 4gp7_A 161 EV 162 (171)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 82
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.92 E-value=2.5e-10 Score=112.85 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=101.0
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc------------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL------------ 109 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i------------ 109 (212)
..+++++++|... .....++++++..++|..++|+|++||||||++++|.++ |...+++-.+
T Consensus 416 I~~~nvsF~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 416 ITVENVHFTYPSR-PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp EEEEEEEECCSSS-TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred EEEEEeeeeCCCC-CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 4456666666421 122345778899999999999999999999999999986 3344443221
Q ss_pred ---ccccccCCc---------------hhHHH---------HHHHhCCcc---------CCCCCccchHhHHHHhcCChH
Q psy17138 110 ---GHRAYDVGT---------------RGNQV---------VRELFGEDI---------ALPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 110 ---~~~~~~~~~---------------~~~~~---------~~~~~g~~~---------~~~~~~~~r~~l~~~vf~~~~ 153 (212)
.++.+.... ..+.. .+..+.... .-+.|+.+|-.|++.+..+|+
T Consensus 495 ~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~ 574 (1321)
T 4f4c_A 495 AVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK 574 (1321)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCS
T ss_pred cccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCC
Confidence 111111110 11111 122221110 013467889999999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
++++..+.+++...+.+.+.+.++.. .+++++-+|-+.-. ..||++++++
T Consensus 575 IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~i---~~aD~Iivl~ 626 (1321)
T 4f4c_A 575 ILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLSTI---RNADLIISCK 626 (1321)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTTT---TTCSEEEEEE
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHHH---HhCCEEEEee
Confidence 56778888898888888887876643 45666668887543 5799999885
No 83
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.92 E-value=7.1e-11 Score=93.90 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=24.9
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+|.+++|+||||||||||+++|+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999999975
No 84
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.91 E-value=2.6e-11 Score=119.81 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=103.8
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc----------
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG---------- 110 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~---------- 110 (212)
....++++++|+.. .....++++++..++|+.+||+|++||||||++++|.++ |...+|+-++.
T Consensus 1076 ~I~f~nVsf~Y~~~-~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER-PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp CEEEEEEEECCTTS-CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred eEEEEEEEEeCCCC-CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 34567777777432 123456788999999999999999999999999999987 55555543321
Q ss_pred -----cc----------c--c--cCCchh---HHHHHHHhCC-----------cc-C------CCCCccchHhHHHHhcC
Q psy17138 111 -----HR----------A--Y--DVGTRG---NQVVRELFGE-----------DI-A------LPDGSIDRKKLGAIVFS 150 (212)
Q Consensus 111 -----~~----------~--~--~~~~~~---~~~~~~~~g~-----------~~-~------~~~~~~~r~~l~~~vf~ 150 (212)
++ + | .+.... ....++..+. +. . -+.|+.+|-.|++.+..
T Consensus 1155 i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr 1234 (1321)
T 4f4c_A 1155 IAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR 1234 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS
T ss_pred eEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh
Confidence 11 1 1 111101 1111111111 10 0 02356788899999999
Q ss_pred ChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 151 NKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 151 ~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+|. ++++.++-+++...+.+.+.+++.. ..+++++-+|=|--. ..||++++++
T Consensus 1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi---~~aD~I~Vld 1289 (1321)
T 4f4c_A 1235 NPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTV---MNADCIAVVS 1289 (1321)
T ss_dssp CCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTT---TTCSEEEEES
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHH---HhCCEEEEEE
Confidence 998 5578888899999999988887764 345666668877542 4699999985
No 85
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=98.91 E-value=4.7e-10 Score=85.10 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=43.6
Q ss_pred CeEecccchhhHHHHHHHHHHCCCCCccEEEeecccCCCCCCcccccceechhhhhhhh
Q psy17138 1 NLIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMREL 59 (212)
Q Consensus 1 ~~vvs~et~~~~~~in~~r~~~gl~~l~~~~i~~~~~~~~~~~~~~~~iss~~~r~~~~ 59 (212)
+||||+||+.++..+|++|.+.|++||++++++.+. . .++.++|||++|....
T Consensus 89 ~ivvs~Et~~~~~~l~~~~~~~G~~~l~V~~v~~~~-~-----~~~~~iSST~IR~~~i 141 (148)
T 3do8_A 89 YLVVSPETYEMALKINQKREELGKRKITIVKVDWMM-A-----EDGKPISSTRIKRGEI 141 (148)
T ss_dssp EEEECTTTHHHHHHHHHHHHHHTCCCCEEEEEECCC-------------CCCCCCCSCC
T ss_pred EEEEChhhcccHHHHHHHHHHcCCCeeEEEEeccEE-c-----CCCCEEEHHHHHHHHH
Confidence 589999999999999999999999999999999997 3 3678999999998755
No 86
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.91 E-value=5.8e-10 Score=88.61 Aligned_cols=41 Identities=27% Similarity=0.184 Sum_probs=34.3
Q ss_pred EEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccccCCc
Q psy17138 78 IIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAYDVGT 118 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~~~~~ 118 (212)
.|+|+|++||||||+++.|+ .+|+.++++|.+.+..+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~ 43 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGT 43 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCC
Confidence 58999999999999999995 689999998877766555443
No 87
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.90 E-value=1.2e-09 Score=85.21 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=32.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR 112 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~ 112 (212)
+.+|+|+|++||||||+++.|+. +|+.+++.|.+.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~ 49 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLRE 49 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHH
Confidence 57899999999999999999985 79999998866544
No 88
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.90 E-value=3e-10 Score=105.25 Aligned_cols=68 Identities=6% Similarity=0.013 Sum_probs=54.7
Q ss_pred CCccchHhHHHHhcCChH----HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 136 DGSIDRKKLGAIVFSNKD----EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 136 ~~~~~r~~l~~~vf~~~~----~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
.|+.+|..|+..+.++|+ +++++.+.++|.....+.+.++++......+++-+|.+... ..||+++++
T Consensus 205 GGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~---~~~d~ii~l 276 (670)
T 3ux8_A 205 GGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTM---LAADYLIDI 276 (670)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHH---HHCSEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH---hhCCEEEEe
Confidence 356788899999999876 55889999999999999999988763345677779998653 469999987
No 89
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.89 E-value=3e-11 Score=119.11 Aligned_cols=156 Identities=13% Similarity=0.091 Sum_probs=102.2
Q ss_pred cceechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccc-----------
Q psy17138 47 DKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLG----------- 110 (212)
Q Consensus 47 ~~iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~----------- 110 (212)
..+++.+++|... .....++++++..++|++++|+|+||||||||+++|.++ |...+++..+.
T Consensus 388 i~~~~v~~~y~~~-~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 466 (1284)
T 3g5u_A 388 LEFKNIHFSYPSR-KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII 466 (1284)
T ss_dssp EEEEEEEECCSST-TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEEEEEcCCC-CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhhe
Confidence 4566777776422 122456778999999999999999999999999999986 33344432221
Q ss_pred ----cccccCCc---------------hhHH---------HHHHHhCCcc---------CCCCCccchHhHHHHhcCChH
Q psy17138 111 ----HRAYDVGT---------------RGNQ---------VVRELFGEDI---------ALPDGSIDRKKLGAIVFSNKD 153 (212)
Q Consensus 111 ----~~~~~~~~---------------~~~~---------~~~~~~g~~~---------~~~~~~~~r~~l~~~vf~~~~ 153 (212)
++.+.... .... ..+..++... .-+.|+.+|-.|++.+..+|+
T Consensus 467 ~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~ 546 (1284)
T 3g5u_A 467 GVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546 (1284)
T ss_dssp EEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCC
Confidence 11110000 0011 1112221110 013467788899999999998
Q ss_pred --HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 154 --EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 154 --~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+++++.+.+++...+.+.+.++.... .+++++-+|-+... ..||++++++
T Consensus 547 iliLDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~i---~~~d~i~vl~ 598 (1284)
T 3g5u_A 547 ILLLDEATSALDTESEAVVQAALDKARE-GRTTIVIAHRLSTV---RNADVIAGFD 598 (1284)
T ss_dssp EEEEESTTCSSCHHHHHHHHHHHHHHHT-TSEEEEECSCHHHH---TTCSEEEECS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHH---HcCCEEEEEE
Confidence 56788889999988888888876644 45677779998764 3499999874
No 90
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.88 E-value=1e-09 Score=83.59 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=29.8
Q ss_pred EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccc
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGH 111 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~ 111 (212)
+|+|+|++||||||+++.|+. +|++++++|.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~ 36 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQ 36 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHH
Confidence 689999999999999999986 7999999876543
No 91
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=2.9e-09 Score=83.88 Aligned_cols=45 Identities=27% Similarity=0.201 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCc
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQ 108 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~ 108 (212)
.+.+++++...++.+|+|+|++||||||+++.|++ +|+.+++.|.
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~ 58 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDW 58 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchH
Confidence 34566788888899999999999999999999984 7888888764
No 92
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.84 E-value=4.9e-09 Score=84.52 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLE 97 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~ 97 (212)
..++|.+++|+||||||||||+++|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 46679999999999999999999998
No 93
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.82 E-value=4.5e-10 Score=107.40 Aligned_cols=68 Identities=10% Similarity=0.138 Sum_probs=54.5
Q ss_pred CCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 135 PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 135 ~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
+.|+.+|-.|+..+.++|+ +++++.+.+++.....+.+.+++. + ..+++-+|.+.+. ..+||++|++.
T Consensus 903 SGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g-~tVIiISHD~e~v--~~l~DrVivL~ 972 (986)
T 2iw3_A 903 SGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--E-GGVIIITHSAEFT--KNLTEEVWAVK 972 (986)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--S-SEEEEECSCHHHH--TTTCCEEECCB
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--C-CEEEEEECCHHHH--HHhCCEEEEEE
Confidence 3467778899999999998 568899999999999888888764 2 4677779998764 47899999874
No 94
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.82 E-value=1e-09 Score=101.67 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=54.7
Q ss_pred CCccchHhHHHHhcCChH-----HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 136 DGSIDRKKLGAIVFSNKD-----EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 136 ~~~~~r~~l~~~vf~~~~-----~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
.|+.+|..|+..+.++|. +++++.+.++|.....+.+.++++......+++-+|.+..+ ..||+++++
T Consensus 546 gG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~---~~~d~i~~l 618 (670)
T 3ux8_A 546 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI---KTADYIIDL 618 (670)
T ss_dssp HHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH---TTCSEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH---HhCCEEEEe
Confidence 467789999999888763 56889999999999999999988763355777779998754 469999987
No 95
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.81 E-value=1.1e-08 Score=79.35 Aligned_cols=31 Identities=35% Similarity=0.302 Sum_probs=27.6
Q ss_pred EEEEecCCCCcHHHHHHHHHH-c---CCeeeeCCc
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-L---GAGLINCDQ 108 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-l---g~~vi~~D~ 108 (212)
+|+|+|++||||||+++.|+. + |++++++|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 689999999999999999985 3 899998874
No 96
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.81 E-value=4.6e-09 Score=85.57 Aligned_cols=45 Identities=20% Similarity=0.042 Sum_probs=37.6
Q ss_pred CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccccCCch
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAYDVGTR 119 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~~~~~~ 119 (212)
++.+|+|+|++||||||+++.|+ .+|+.++++|.+.+....++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~ 73 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTE 73 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccch
Confidence 57899999999999999999997 5899999988777765555443
No 97
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.79 E-value=1.4e-08 Score=82.42 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=69.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccc--------cCC-chhHHHHHHHhCCccCCCCCccchH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAY--------DVG-TRGNQVVRELFGEDIALPDGSIDRK 142 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~--------~~~-~~~~~~~~~~~g~~~~~~~~~~~r~ 142 (212)
..++.+++|+||+||||||+++.|+ .+|+.+++.|.+.+.+. ... ......+...+...+....+. ++.
T Consensus 6 ~~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~-~~v 84 (233)
T 3r20_A 6 VSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDV-DAA 84 (233)
T ss_dssp ---CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTS-CCE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCC-cEE
Confidence 3457899999999999999999997 57999999887644321 010 111222333222111100000 000
Q ss_pred hHHH-Hh---cCChHHHHHH-HhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeCCC
Q psy17138 143 KLGA-IV---FSNKDEMNKL-NQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIPEQ 211 (212)
Q Consensus 143 ~l~~-~v---f~~~~~~~~~-~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~~~ 211 (212)
.+.. -+ ...+..-... .-..+|.+++.+.+..+++.....-+|+++..+-..-+ ...|..+|+++|.+
T Consensus 85 ~l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~-pda~lkifl~A~~e 157 (233)
T 3r20_A 85 FLAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVL-PDADVKIFLTASAE 157 (233)
T ss_dssp EETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCC-TTCSEEEEEECCHH
T ss_pred EECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEc-CCCCEEEEEECCHH
Confidence 0000 00 0000000000 01235777777766666554331457778886543212 23689999999865
No 98
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.78 E-value=9.8e-09 Score=79.85 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=32.9
Q ss_pred CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHR 112 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~ 112 (212)
++.+|+|+|++||||||+++.|+ .+|+.+++.|.+.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~ 46 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRS 46 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHH
Confidence 47799999999999999999998 579999998865544
No 99
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.74 E-value=4e-09 Score=83.00 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=31.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQL 109 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i 109 (212)
.+.+|+|+|++||||||+++.|++ +|+.++++|.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~ 52 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDAL 52 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcC
Confidence 467899999999999999999975 69999998864
No 100
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.67 E-value=7.2e-09 Score=80.63 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=35.7
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc--CCeeeeCCccccc
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL--GAGLINCDQLGHR 112 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l--g~~vi~~D~i~~~ 112 (212)
.+..+.++..|+|+|++||||||+++.|+.. |++++++|.+.++
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~ 48 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE 48 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHH
Confidence 3455667889999999999999999999865 9999998876554
No 101
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.65 E-value=1.5e-08 Score=88.81 Aligned_cols=126 Identities=11% Similarity=0.045 Sum_probs=78.1
Q ss_pred EEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCcc----------------cccc--ccCCchhHHHHHHHhCCccCC
Q psy17138 78 IIGLTGGIASGKSTIAKYLETL-----GAGLINCDQL----------------GHRA--YDVGTRGNQVVRELFGEDIAL 134 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i----------------~~~~--~~~~~~~~~~~~~~~g~~~~~ 134 (212)
++||+|+||||||||+++|.++ |...++...+ ..+. +...........+.++..-..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~ 150 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD 150 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccC
Confidence 9999999999999999999985 3222221110 0010 000112345566666543211
Q ss_pred -----CCC--ccchHhHHHHhcC----------ChH--HHHHHHhhhhHHHHHHHHHHHHhhc---------CCCcEEEE
Q psy17138 135 -----PDG--SIDRKKLGAIVFS----------NKD--EMNKLNQAIWPLILAQVKEEIARLS---------ESHKVIVI 186 (212)
Q Consensus 135 -----~~~--~~~r~~l~~~vf~----------~~~--~~~~~~~i~~p~~~~~~~~~i~~~~---------~~~~~vvi 186 (212)
+.| +.+|..++..+.+ +|+ +++++.+.++|.....+.+.+++.. ....++++
T Consensus 151 ~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iili 230 (413)
T 1tq4_A 151 FFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLL 230 (413)
T ss_dssp EEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEEC
T ss_pred CeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 223 5667777777777 777 4577777777777777766665541 12468889
Q ss_pred EeccccccccccccCeE
Q psy17138 187 EAAVLLSAKWQDQVHEI 203 (212)
Q Consensus 187 e~~~l~e~~~~~~~d~v 203 (212)
.+|.+.+.++.++||++
T Consensus 231 Ssh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 231 SNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp CTTCTTSTTHHHHHHHH
T ss_pred ecCcCCccCHHHHHHHH
Confidence 99998876777777764
No 102
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.64 E-value=3e-08 Score=76.05 Aligned_cols=37 Identities=32% Similarity=0.295 Sum_probs=32.9
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLG 110 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~ 110 (212)
.+|.+++|+|+|||||||+++.|++ +|..++++|.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCcccc
Confidence 4589999999999999999999986 599999988754
No 103
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.61 E-value=1.5e-08 Score=81.24 Aligned_cols=36 Identities=19% Similarity=0.066 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..++++++...+|.+++|+||||||||||+++|.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345678888999999999999999999999999986
No 104
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.60 E-value=1.7e-08 Score=77.09 Aligned_cols=35 Identities=34% Similarity=0.356 Sum_probs=30.4
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLG 110 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~ 110 (212)
+.+|+|+|+|||||||++++|++ +++.++++|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~ 39 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEI 39 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHH
Confidence 56899999999999999999997 688888877543
No 105
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.59 E-value=2.1e-08 Score=76.47 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=31.9
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR 112 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~ 112 (212)
..+.+|+|+|++||||||+++.|+. +|++++++|.+.++
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~ 44 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISE 44 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 4578999999999999999999986 79999998865443
No 106
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.57 E-value=9.1e-08 Score=82.28 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=41.1
Q ss_pred ccceechhhhhhhhccccCCCCCCCCCCCC--CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 46 EDKLSSSNLRMRELGTLRKPVQPKPHLSPY--PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 46 ~~~iss~~~r~~~~g~~l~~~~~~~~~~~~--~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...||||.+|.... .....+++...+ +..++|+|+||||||||+++|+++
T Consensus 142 ~~~iSsT~IRe~~~----~~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 142 FFNVSATKIRTTPF----QYWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp SSCCCHHHHHHCGG----GGGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHhChh----hChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 45799999987532 123457788888 999999999999999999999987
No 107
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.56 E-value=1.4e-08 Score=88.44 Aligned_cols=68 Identities=13% Similarity=0.238 Sum_probs=53.2
Q ss_pred CCCccchHhHHHHhcCCh--H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 135 PDGSIDRKKLGAIVFSNK--D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 135 ~~~~~~r~~l~~~vf~~~--~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
+.|+.+|-.|+..+.++| . +++++.+.+++.....+.+.++++. ....|++-+|.+.. .++||+++++
T Consensus 297 SgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~---~~~~d~i~~l 368 (415)
T 4aby_A 297 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQI---AARAHHHYKV 368 (415)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHH---HTTCSEEEEE
T ss_pred CHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHH---HhhcCeEEEE
Confidence 345666778888888888 6 5688899999999999999998875 34566666998743 3579999988
No 108
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.55 E-value=3.9e-08 Score=75.98 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=33.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccccc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRA 113 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~ 113 (212)
+|.+|+|+|++||||||+++.|+ .+|+.++++|.+.+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~ 42 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDH 42 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHH
Confidence 57899999999999999999997 5799999987665543
No 109
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.54 E-value=3.7e-08 Score=77.16 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=24.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+|.+++|+|||||||||++++|+++
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 446899999999999999999999987
No 110
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.53 E-value=8.6e-08 Score=75.00 Aligned_cols=33 Identities=18% Similarity=0.076 Sum_probs=27.7
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc--CCeeeeCC
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL--GAGLINCD 107 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l--g~~vi~~D 107 (212)
+|.+|+|+|++||||||+++.|+.. |+.+++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4789999999999999999999864 57666643
No 111
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.53 E-value=5.1e-08 Score=75.59 Aligned_cols=37 Identities=38% Similarity=0.339 Sum_probs=30.5
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc---CCeeeeCCcc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL---GAGLINCDQL 109 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l---g~~vi~~D~i 109 (212)
..+|.+++|+|+|||||||++++|+++ |...++.|.+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 557899999999999999999999975 3346677654
No 112
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.52 E-value=4.3e-08 Score=77.57 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=24.6
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHcC
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETLG 100 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~lg 100 (212)
...+|++++|+|||||||||++++|.++-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57789999999999999999999999863
No 113
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.51 E-value=1.8e-07 Score=74.94 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=31.5
Q ss_pred EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccc
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAY 114 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~ 114 (212)
+|.|+|++||||||+++.|+. +|+.++++|.+.++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~ 39 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHI 39 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHH
Confidence 689999999999999999984 7999999877665543
No 114
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.51 E-value=2.5e-08 Score=80.16 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHH-HcC
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLE-TLG 100 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~-~lg 100 (212)
-..++++...+|.+++|+|||||||||++++|. ++.
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345577888999999999999999999999999 874
No 115
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.51 E-value=3.3e-08 Score=75.58 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+.+++...+|.+++|+||||||||||+|+|+++
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34456677889999999999999999999999986
No 116
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.49 E-value=7.7e-09 Score=84.89 Aligned_cols=49 Identities=29% Similarity=0.390 Sum_probs=39.7
Q ss_pred CCCCCCCCCCC---CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccccc
Q psy17138 65 PVQPKPHLSPY---PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRA 113 (212)
Q Consensus 65 ~~~~~~~~~~~---~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~ 113 (212)
.++++++...+ +.+|+|+|++||||||++++|++ +|+.++++|.+.+..
T Consensus 34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~ 86 (250)
T 3nwj_A 34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQA 86 (250)
T ss_dssp HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHH
Confidence 34455666666 89999999999999999999986 899999988655443
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.49 E-value=5.9e-08 Score=77.01 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.++|.+++|+|+|||||||+++.|++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 456899999999999999999999853
No 118
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.49 E-value=8.3e-08 Score=86.48 Aligned_cols=133 Identities=9% Similarity=-0.121 Sum_probs=76.2
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc----CCe--eeeCCccccccc----cCCchhHHHHHHHhCCccC-C------
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL----GAG--LINCDQLGHRAY----DVGTRGNQVVRELFGEDIA-L------ 134 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~--vi~~D~i~~~~~----~~~~~~~~~~~~~~g~~~~-~------ 134 (212)
...+|.+++|+|+||||||||++.|+++ |.. ++....-...+. ..+.. ...+. .+|...+ .
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~-~~~~~-~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD-FEEME-RQNLLKIVCAYPESA 354 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCC-HHHHH-HTTSEEECCCCGGGS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCC-HHHHH-hCCCEEEEEeccccC
Confidence 5678999999999999999999999875 321 222211100000 00000 01111 1121111 1
Q ss_pred CCCccchHhHHHHhcCChH--HHHHHHhhhhHH-----HHHHHHHHHHhhcCCCcEEEEEecccc-c-------cccccc
Q psy17138 135 PDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPL-----ILAQVKEEIARLSESHKVIVIEAAVLL-S-------AKWQDQ 199 (212)
Q Consensus 135 ~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~-----~~~~~~~~i~~~~~~~~~vvie~~~l~-e-------~~~~~~ 199 (212)
+.++.+|..++.+...+|+ .++ +.+.+++. .+..+.+.++.++.....+++.+|... + ..+..+
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~ 433 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTI 433 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTT
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCccccee
Confidence 2234556667766666776 345 56666666 777777777766533456677788871 1 224568
Q ss_pred cCeEEEEE
Q psy17138 200 VHEIWVTF 207 (212)
Q Consensus 200 ~d~v~~v~ 207 (212)
||+++++.
T Consensus 434 ~D~vi~L~ 441 (525)
T 1tf7_A 434 TDTIILLQ 441 (525)
T ss_dssp CSEEEEEE
T ss_pred eeEEEEEE
Confidence 99999775
No 119
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.48 E-value=4e-08 Score=93.70 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=53.6
Q ss_pred CCCccchHhHHHHhcCCh---H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 135 PDGSIDRKKLGAIVFSNK---D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 135 ~~~~~~r~~l~~~vf~~~---~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
+.|+.+|-.|+..+.++| . +++++++.+|+...+.+.+.+.++......|++-+|.+... ..||+++++
T Consensus 807 SGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i---~~ADrIivL 880 (916)
T 3pih_A 807 SGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVI---KNADHIIDL 880 (916)
T ss_dssp CHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH---TTCSEEEEE
T ss_pred CHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH---HhCCEEEEe
Confidence 346778999998888765 3 56889999999999999999887763345666668998654 359999887
No 120
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.48 E-value=1.6e-07 Score=72.92 Aligned_cols=30 Identities=37% Similarity=0.367 Sum_probs=25.1
Q ss_pred EEEEecCCCCcHHHHHHHHHH-c---CCeeeeCC
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-L---GAGLINCD 107 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-l---g~~vi~~D 107 (212)
+|+|+|++||||||+++.|+. + |+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 799999999999999999986 4 88887543
No 121
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.47 E-value=4.6e-08 Score=93.27 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=53.4
Q ss_pred CccchHhHHHHhcCCh---H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 137 GSIDRKKLGAIVFSNK---D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 137 ~~~~r~~l~~~vf~~~---~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
|+.+|..|+..+..+| . +++++.+.+++.....+.+.+.++......|++-+|.+.+. ..||+++++
T Consensus 849 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i---~~aDrIivL 920 (972)
T 2r6f_A 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI---KTADYIIDL 920 (972)
T ss_dssp HHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH---TTCSEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH---HhCCEEEEE
Confidence 5677889998888765 4 66889999999999999999988763345677779998764 479999988
No 122
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.47 E-value=1.3e-08 Score=96.32 Aligned_cols=67 Identities=9% Similarity=0.182 Sum_probs=53.4
Q ss_pred CccchHhHHHHhcCC---hH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 137 GSIDRKKLGAIVFSN---KD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 137 ~~~~r~~l~~~vf~~---~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
|+.+|-.|+..+..+ |. +++++.+.+++.....+.+.+.++......|++-+|.+.+. ..||+++++
T Consensus 734 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i---~~aDrii~L 805 (842)
T 2vf7_A 734 GEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV---AASDWVLDI 805 (842)
T ss_dssp HHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH---TTCSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH---HhCCEEEEE
Confidence 566788899888886 35 66889999999999999999988763355677779998764 479999987
No 123
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.46 E-value=1.1e-07 Score=72.17 Aligned_cols=35 Identities=29% Similarity=0.200 Sum_probs=30.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGH 111 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~ 111 (212)
.+|+|+|++||||||+++.|+. +|+++++.|.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~ 37 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFEL 37 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCccccc
Confidence 5799999999999999999974 6999999987543
No 124
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.46 E-value=1.5e-07 Score=74.06 Aligned_cols=34 Identities=29% Similarity=0.204 Sum_probs=27.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCC
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCD 107 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D 107 (212)
.+|.+|+|+|++||||||+++.|+. ++...++.|
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 3578999999999999999999985 554444443
No 125
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.44 E-value=7.2e-08 Score=92.16 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=53.5
Q ss_pred CCccchHhHHHHhcCCh---H--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEE
Q psy17138 136 DGSIDRKKLGAIVFSNK---D--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVT 206 (212)
Q Consensus 136 ~~~~~r~~l~~~vf~~~---~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v 206 (212)
.|+.+|..|+..+..+| . +++++.+.+++.....+.+.+.++......|++-+|.+.+. ..||+++++
T Consensus 866 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i---~~aDrIivL 938 (993)
T 2ygr_A 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI---KTSDWIIDL 938 (993)
T ss_dssp HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH---TTCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH---HhCCEEEEE
Confidence 35677889998888764 4 66889999999999999999887763345666668998764 479999988
No 126
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.44 E-value=1.3e-07 Score=74.24 Aligned_cols=40 Identities=30% Similarity=0.237 Sum_probs=34.1
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR 112 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~ 112 (212)
..++.+|+|+|++||||||+++.|+. +|+++++.|.+.++
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~ 57 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRR 57 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHH
Confidence 45578999999999999999999985 79999998766554
No 127
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.44 E-value=1.8e-07 Score=84.74 Aligned_cols=96 Identities=20% Similarity=0.135 Sum_probs=53.7
Q ss_pred HHHHHHHHHHCCCCCccEEEeecccC-------CCCCC-cccccceechhhhhh-hhccccCCCCCC-------------
Q psy17138 12 GVKVNELRVANSLKPLDVVSVPLLPS-------DGKVD-EQEEDKLSSSNLRMR-ELGTLRKPVQPK------------- 69 (212)
Q Consensus 12 ~~~in~~r~~~gl~~l~~~~i~~~~~-------~~~~~-~~~~~~iss~~~r~~-~~g~~l~~~~~~------------- 69 (212)
..-+.+...+.|++|+.+....|... +..+. ......||++.+|.. ..... .+|...
T Consensus 287 ~~~~~~~~~~lgi~~v~fd~~~y~~~~g~~i~id~~~~~~~~~~~iSgt~iR~~~L~~g~-~~p~~~~r~eV~~~lr~~~ 365 (546)
T 2gks_A 287 QELFKKYEDEIGIKMVPFEELVYVPELDQYVEINEAKKRNLKYINISGTEIRENFLKQGR-KLPEWFTRPEVAEILAETY 365 (546)
T ss_dssp HHHHHHHHHHHTCEEEECCCCEEETTTTEEECSCC---------------CTHHHHTTTC-CCCTTTSCHHHHHHHHHHS
T ss_pred HHHHHhcccccCceEEeccceEEEcCCCeEEeeeccCCCCceeeecchhhhhhhhhcCCC-CCCccccchhHHHHHHHhh
Confidence 34456666788999988888777652 11222 344567999999887 43222 232211
Q ss_pred CCCCCCCeEEEEecCCCCcHHHHHHHHHH-cC-----CeeeeCCc
Q psy17138 70 PHLSPYPYIIGLTGGIASGKSTIAKYLET-LG-----AGLINCDQ 108 (212)
Q Consensus 70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~~-lg-----~~vi~~D~ 108 (212)
+.....+.+|.++|++||||||+++.|+. ++ +.++++|.
T Consensus 366 ~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 366 VPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred ccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 11234578999999999999999999985 43 24556554
No 128
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.42 E-value=9e-08 Score=82.54 Aligned_cols=68 Identities=10% Similarity=-0.020 Sum_probs=49.2
Q ss_pred CccchHhHHHHhc------CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEE
Q psy17138 137 GSIDRKKLGAIVF------SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTF 207 (212)
Q Consensus 137 ~~~~r~~l~~~vf------~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~ 207 (212)
|+.+|..++..+. ++|+ +++++.+.++|.....+.+.+.++......+++-+|.+.. ...||+++++.
T Consensus 283 Ge~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~---~~~~d~~~~l~ 358 (365)
T 3qf7_A 283 GERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF---SEAFDRKLRIT 358 (365)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH---HTTCSCEEEEE
T ss_pred HHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH---HHhCCEEEEEE
Confidence 3445555554444 5665 5577888899999999999998876445677777998865 35799999875
No 129
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.40 E-value=1.5e-07 Score=73.93 Aligned_cols=39 Identities=33% Similarity=0.418 Sum_probs=32.0
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc----CCe--eeeCCcccc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL----GAG--LINCDQLGH 111 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l----g~~--vi~~D~i~~ 111 (212)
..+|.+|+|+|+|||||||+++.|+++ |.. +++.|.+..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 466999999999999999999999863 555 777776543
No 130
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.38 E-value=1.3e-07 Score=71.49 Aligned_cols=32 Identities=41% Similarity=0.444 Sum_probs=28.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHcCCeeeeCCc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQ 108 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~ 108 (212)
.+|+|+|++||||||+++.|..+|+.+++.|.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L~~~g~~~i~~~~ 33 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLLKERGAKVIVMSD 33 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTCEEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHCCCcEEEHhH
Confidence 47999999999999999999778999988654
No 131
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.37 E-value=8.9e-08 Score=73.93 Aligned_cols=36 Identities=39% Similarity=0.429 Sum_probs=31.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR 112 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~ 112 (212)
.+|+|+|++||||||+++.|+. +|++++++|.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~ 39 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQ 39 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHH
Confidence 4699999999999999999985 79999998865443
No 132
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.37 E-value=3e-08 Score=83.61 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=36.3
Q ss_pred eechhhhhhhhccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 49 LSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 49 iss~~~r~~~~g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+.+++++|. ...++++++..++|.+++|+||||||||||+++|.++
T Consensus 104 ~~~vs~~y~-----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 104 YQNIELITF-----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HTTCCHHHH-----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEEEEcC-----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 444555553 1245567788999999999999999999999999986
No 133
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.36 E-value=1.4e-07 Score=85.65 Aligned_cols=94 Identities=20% Similarity=0.174 Sum_probs=63.6
Q ss_pred HHHHHHHCCCCCccEEEeecccC-------CCCCCcccccceechhhhhhhhccccCCCCCC-------------CCCCC
Q psy17138 15 VNELRVANSLKPLDVVSVPLLPS-------DGKVDEQEEDKLSSSNLRMRELGTLRKPVQPK-------------PHLSP 74 (212)
Q Consensus 15 in~~r~~~gl~~l~~~~i~~~~~-------~~~~~~~~~~~iss~~~r~~~~g~~l~~~~~~-------------~~~~~ 74 (212)
+.+...+.|++|+.+....|... +..+.......||++.+|+...... .+|... +....
T Consensus 289 ~~~~~~~l~i~pv~f~~~~y~~~~g~~~~~d~~~~~~~~~~isgt~ir~~Lr~G~-~~p~~f~~peV~~vLR~~~~~~~~ 367 (552)
T 3cr8_A 289 VAERAEKIGVRLIAYPRMVYVEDRAEHLPEAEAPQGARLLTLSGEEFQRRMRAGL-KIPEWYSFPEVLAELHRQTPPRER 367 (552)
T ss_dssp SHHHHHHHTCEEECCCCEEEEGGGTEEEEGGGSCTTCCEECCCHHHHHHHHTTTC-CCCTTTSCHHHHHHHHHHSCCGGG
T ss_pred HHhhhhhcCCeeeeccceEEecCCCeEEecccCCCCcccccCCHHHHHHHHhcCC-CCCccccccchhhhhhhhcccccc
Confidence 34455678999999988877762 1123344556799999988754222 222111 12356
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc-----C--CeeeeCCcc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL-----G--AGLINCDQL 109 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l-----g--~~vi~~D~i 109 (212)
+|.+++|+|+|||||||++++|+++ | ..+++.|.+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 8999999999999999999999964 2 234676654
No 134
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.36 E-value=2.4e-07 Score=73.73 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=32.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR 112 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~ 112 (212)
.+|.+|.|+|++||||||+++.|+. +|+.+++.|.+.++
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~ 41 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRS 41 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHH
Confidence 4578999999999999999999984 79999998765554
No 135
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.35 E-value=1.6e-07 Score=73.01 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=22.0
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
|.+++|+|||||||||++++|.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 467999999999999999999975
No 136
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.34 E-value=1.3e-07 Score=71.95 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=29.8
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQL 109 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i 109 (212)
+.+|+|+|++||||||+++.|+. +|++++++|.+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~ 36 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIF 36 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHH
Confidence 35799999999999999999985 79999987754
No 137
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.33 E-value=2.7e-07 Score=71.44 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=23.7
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+|.+++|+||||||||||++.|.++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45889999999999999999999875
No 138
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.32 E-value=3.7e-07 Score=70.22 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=29.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc----CCeee--eCCccc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL----GAGLI--NCDQLG 110 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l----g~~vi--~~D~i~ 110 (212)
.+|.+|+|+|++||||||+++.|++. |++++ ++|.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence 45899999999999999999999874 87766 444443
No 139
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.32 E-value=2.4e-07 Score=71.43 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=31.3
Q ss_pred CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH 111 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~ 111 (212)
+..|.|+|++||||||+++.|+ .+|++++++|.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~ 41 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIE 41 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHH
Confidence 5689999999999999999997 47999999886543
No 140
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.31 E-value=8.9e-07 Score=74.45 Aligned_cols=33 Identities=21% Similarity=0.077 Sum_probs=29.5
Q ss_pred CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.++++...+|.+++|+|+|||||||+++.|+++
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 356777889999999999999999999999975
No 141
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.30 E-value=3.1e-07 Score=73.75 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=24.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHcC
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETLG 100 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~lg 100 (212)
-++|.+++|+||||||||||+++|.++-
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4569999999999999999999999863
No 142
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.29 E-value=1.1e-07 Score=91.01 Aligned_cols=129 Identities=9% Similarity=-0.035 Sum_probs=69.6
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH------cCCeeeeC-Cc--cccccccCCchhHHHHHHHhCCccCCC
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET------LGAGLINC-DQ--LGHRAYDVGTRGNQVVRELFGEDIALP 135 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~------lg~~vi~~-D~--i~~~~~~~~~~~~~~~~~~~g~~~~~~ 135 (212)
.++++++...+|.+++|+|||||||||++|+++. .|..+... .. +...++..-+ ..+.+.. + . +
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig-~~d~l~~--~--l--S 723 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVG-AGDSQLK--G--V--S 723 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC----------------C
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcC-chhhHHH--h--H--h
Confidence 3455677778899999999999999999999943 24322110 00 0011111000 0000000 0 0 1
Q ss_pred CCccchHhHHHHh--cCChH--HHHHHHhhhhHHHHHHH-HHHHHhhc-CCCcEEEEEeccccccccccccCeE
Q psy17138 136 DGSIDRKKLGAIV--FSNKD--EMNKLNQAIWPLILAQV-KEEIARLS-ESHKVIVIEAAVLLSAKWQDQVHEI 203 (212)
Q Consensus 136 ~~~~~r~~l~~~v--f~~~~--~~~~~~~i~~p~~~~~~-~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d~v 203 (212)
.++..+..++.++ ..+|+ +++++...++|.-...+ +..++.+. .....+++.+|+..-+ .+||++
T Consensus 724 tf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~---~lad~~ 794 (934)
T 3thx_A 724 TFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT---ALANQI 794 (934)
T ss_dssp HHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG---GGGGTC
T ss_pred hhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH---HHhccc
Confidence 1122344444444 56666 45677777888766666 44555544 3356777889985433 456654
No 143
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.28 E-value=2.2e-07 Score=74.11 Aligned_cols=114 Identities=15% Similarity=0.048 Sum_probs=60.5
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc----CCee---eeCC--ccccc-cccCCchhHHHH-------HHHhCC-cc---
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL----GAGL---INCD--QLGHR-AYDVGTRGNQVV-------RELFGE-DI--- 132 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l----g~~v---i~~D--~i~~~-~~~~~~~~~~~~-------~~~~g~-~~--- 132 (212)
.+|.+++|+||||||||||+++|+++ |... +... ...+. .|.++.. .+.+ ...... ..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-~enl~~~~~~~~~~~~~~~~~~~ 98 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTL-NEKIDPYLRPLHDALRDMVEPEV 98 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC-------CTTTHHHHHHHTTTSCTTH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCH-HHHHHHHHHHHHHHHHHhccHHH
Confidence 56899999999999999999999987 2111 1100 01111 1222110 0000 000000 00
Q ss_pred ----C-CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEecccccc
Q psy17138 133 ----A-LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSA 194 (212)
Q Consensus 133 ----~-~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~ 194 (212)
+ ...|+.+|..++..+..+|+ +++++.+. ....+.+.+.++ .....++ .+|.+.+.
T Consensus 99 ~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 99 IPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQV 161 (208)
T ss_dssp HHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC----
T ss_pred HHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHH
Confidence 0 01166777788888888887 44556555 556666667665 3445666 78887654
No 144
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.28 E-value=3.5e-07 Score=70.72 Aligned_cols=37 Identities=35% Similarity=0.455 Sum_probs=32.1
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLG 110 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~ 110 (212)
.++.+|.|+|++||||||+++.|+. +|+.+++.|.+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~ 40 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFK 40 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHH
Confidence 3578999999999999999999985 799999887654
No 145
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.28 E-value=2.6e-07 Score=72.70 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=21.7
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+|.+++|+||||||||||+++|.++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4778999999999999999999875
No 146
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.28 E-value=2.8e-07 Score=70.41 Aligned_cols=34 Identities=38% Similarity=0.246 Sum_probs=29.3
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH--cCCeeeeCCcc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET--LGAGLINCDQL 109 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~--lg~~vi~~D~i 109 (212)
+.+|.|.|++||||||+++.|+. +|+.+++.|.+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~ 37 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY 37 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHH
Confidence 46899999999999999999986 68888887654
No 147
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.25 E-value=3.4e-07 Score=70.20 Aligned_cols=33 Identities=36% Similarity=0.414 Sum_probs=28.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLET-LGAGLINCDQL 109 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i 109 (212)
..|.|+|++||||||+++.|+. +|+++++.|.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~ 38 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFL 38 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHH
Confidence 4689999999999999999984 79999887753
No 148
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.25 E-value=2.3e-08 Score=85.89 Aligned_cols=28 Identities=36% Similarity=0.348 Sum_probs=22.8
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCee
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGL 103 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~v 103 (212)
...++|+|++||||||++++|++ +++.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34599999999999999999985 45444
No 149
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.24 E-value=4e-07 Score=73.81 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=27.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCC
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCD 107 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D 107 (212)
+|.+++|+|+|||||||++++|+ .+|...++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G 59 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSG 59 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 47899999999999999999998 4566555543
No 150
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.24 E-value=7e-07 Score=70.67 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=24.7
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.++|.+++|+|||||||||+++.|.+.
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred cCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 456899999999999999999999976
No 151
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.24 E-value=5e-07 Score=70.17 Aligned_cols=61 Identities=5% Similarity=-0.129 Sum_probs=38.8
Q ss_pred CccchHhHHHH-----hcCChH--HHHH--HHhhhhHHHHHHHHHHHHhhcCCCcEEEEEec---cccccccccccCe
Q psy17138 137 GSIDRKKLGAI-----VFSNKD--EMNK--LNQAIWPLILAQVKEEIARLSESHKVIVIEAA---VLLSAKWQDQVHE 202 (212)
Q Consensus 137 ~~~~r~~l~~~-----vf~~~~--~~~~--~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~---~l~e~~~~~~~d~ 202 (212)
|+.+|..++.. +..+|+ ++++ +.+.++|...+.+.+.+.+ ....+++.+| .+... ..+||+
T Consensus 80 G~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~--~~i~~r 152 (178)
T 1ye8_A 80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLV--KEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHH--HHHHTC
T ss_pred HHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHH--HHHHhc
Confidence 44556667764 678887 4577 7788899988888877754 2343555564 43322 346776
No 152
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.22 E-value=6.3e-07 Score=71.67 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=32.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHR 112 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~ 112 (212)
.++.+|.|+|++||||||+++.|+ .+|+.+++.|.+.+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~ 44 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRD 44 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHH
Confidence 346889999999999999999997 689999988765443
No 153
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.21 E-value=1.1e-06 Score=71.82 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=30.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL 109 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i 109 (212)
+.++.|+|++||||||+++.|+ .+++.+++.|.+
T Consensus 1 M~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred CeEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 3579999999999999999997 579999999875
No 154
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.19 E-value=1.9e-06 Score=74.10 Aligned_cols=32 Identities=22% Similarity=0.079 Sum_probs=29.1
Q ss_pred CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
++++...+|.+++|+|+|||||||+++.|+++
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 46777889999999999999999999999975
No 155
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.19 E-value=4.1e-07 Score=70.14 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=27.4
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cC-----CeeeeCC
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LG-----AGLINCD 107 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg-----~~vi~~D 107 (212)
+.+|.|+|++||||||+++.|+. ++ +.+++.|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 57899999999999999999985 66 7777654
No 156
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.19 E-value=6.2e-07 Score=68.92 Aligned_cols=36 Identities=36% Similarity=0.322 Sum_probs=30.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL 109 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i 109 (212)
.++.+|.|+|++||||||+++.|+ .+|+.+++.|.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~ 45 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDL 45 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHH
Confidence 346788999999999999999997 569998887754
No 157
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.19 E-value=8.3e-07 Score=71.35 Aligned_cols=41 Identities=22% Similarity=0.124 Sum_probs=33.2
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHR 112 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~ 112 (212)
...++.+|.|+|++||||||+++.|+ .+++.++++|.+.++
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~ 53 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRA 53 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence 35567899999999999999999998 589999998765444
No 158
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.18 E-value=9.2e-07 Score=68.48 Aligned_cols=35 Identities=31% Similarity=0.375 Sum_probs=28.3
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-c-CCeeeeCCccc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-L-GAGLINCDQLG 110 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-l-g~~vi~~D~i~ 110 (212)
|.+++|+|+|||||||+++.|++ + |..+++.|.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~ 38 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIIN 38 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchh
Confidence 57899999999999999999986 3 33667776553
No 159
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.17 E-value=6.5e-07 Score=79.53 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=32.7
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----C-C-eeeeCC
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----G-A-GLINCD 107 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g-~-~vi~~D 107 (212)
+++...+|.+++|+||||||||||+|+|+++ | . ..++.|
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~ 176 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD 176 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC
Confidence 4556778999999999999999999999987 6 5 556654
No 160
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.17 E-value=1.7e-06 Score=68.05 Aligned_cols=26 Identities=27% Similarity=0.175 Sum_probs=23.8
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.++|.+++|+|+|||||||+++.|+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 55689999999999999999999975
No 161
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.16 E-value=1.4e-06 Score=77.84 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 66 VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 66 ~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+++++...+|.+++|+|+|||||||+++.|+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHH
Confidence 3567788899999999999999999999999975
No 162
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.15 E-value=1.1e-06 Score=72.26 Aligned_cols=27 Identities=30% Similarity=0.188 Sum_probs=24.8
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+|.+++|+|||||||||++++|.++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 567999999999999999999999874
No 163
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.15 E-value=1e-06 Score=69.87 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.9
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.++|.+++|+||||||||||+++|+++
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999999999974
No 164
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.14 E-value=8.5e-07 Score=75.43 Aligned_cols=115 Identities=12% Similarity=0.015 Sum_probs=64.1
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-----CCeeeeCCccccccccC-CchhHHHHHHHhCCccCCCCCccchH
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL-----GAGLINCDQLGHRAYDV-GTRGNQVVRELFGEDIALPDGSIDRK 142 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-----g~~vi~~D~i~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~r~ 142 (212)
+++....|.+++|+|+|||||||++++|.++ |...++... +...+ .... + .+....+...|.
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~---e~~~~~~~~~----i-----~~~~ggg~~~r~ 231 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE---EIVFKHHKNY----T-----QLFFGGNITSAD 231 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC---CCCCSSCSSE----E-----EEECBTTBCHHH
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee---ccccccchhE----E-----EEEeCCChhHHH
Confidence 4455667899999999999999999999986 323333211 10000 0000 0 000014556677
Q ss_pred hHHHHhcCChHH--HHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEE
Q psy17138 143 KLGAIVFSNKDE--MNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWV 205 (212)
Q Consensus 143 ~l~~~vf~~~~~--~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~ 205 (212)
.++..+.++|+. ++++.. . ++.+.++.+..++..+++.+|.+. ..+.||++++
T Consensus 232 ~la~aL~~~p~ilildE~~~---~----e~~~~l~~~~~g~~tvi~t~H~~~---~~~~~dri~~ 286 (330)
T 2pt7_A 232 CLKSCLRMRPDRIILGELRS---S----EAYDFYNVLCSGHKGTLTTLHAGS---SEEAFIRLAN 286 (330)
T ss_dssp HHHHHTTSCCSEEEECCCCS---T----HHHHHHHHHHTTCCCEEEEEECSS---HHHHHHHHHH
T ss_pred HHHHHhhhCCCEEEEcCCCh---H----HHHHHHHHHhcCCCEEEEEEcccH---HHHHhhhhee
Confidence 888888888873 232222 2 233445444445556777788754 2345555443
No 165
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.12 E-value=1.1e-06 Score=70.71 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=26.1
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHcC
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETLG 100 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~lg 100 (212)
...+|.+|+|.|++||||||++++|++++
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~~ 44 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKYK 44 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhcc
Confidence 35679999999999999999999999874
No 166
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.12 E-value=8e-07 Score=70.68 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=31.7
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcccc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGH 111 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~ 111 (212)
+|.+|.|+|++||||||+++.|+. +|+.+++.|.+.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~ 41 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLR 41 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHH
Confidence 467899999999999999999975 8999999876544
No 167
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.11 E-value=1.1e-06 Score=68.97 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.9
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
|.+++|+|+|||||||++++|+++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhh
Confidence 467999999999999999999975
No 168
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.10 E-value=2.5e-06 Score=65.14 Aligned_cols=33 Identities=33% Similarity=0.516 Sum_probs=26.3
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCeee--eCCc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGLI--NCDQ 108 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi--~~D~ 108 (212)
+.+|.|+|++||||||+++.|+. ++..++ +.|.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 56899999999999999999985 555444 4553
No 169
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.09 E-value=1.5e-06 Score=66.67 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHH-HcCCeee
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLE-TLGAGLI 104 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi 104 (212)
.+|.+|.|+|++||||||+++.|+ .+|.+++
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 357899999999999999999998 5788776
No 170
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.09 E-value=7.1e-07 Score=85.19 Aligned_cols=126 Identities=8% Similarity=0.026 Sum_probs=68.3
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc------CCeeeeCCcc----ccccccCCchhHHHHHHHhCCccC
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL------GAGLINCDQL----GHRAYDVGTRGNQVVRELFGEDIA 133 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l------g~~vi~~D~i----~~~~~~~~~~~~~~~~~~~g~~~~ 133 (212)
..++++++...+|.+++|+|||||||||++|++..+ |..+. +... ...++..-+ ..+.+ . .+...+
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vp-a~~~~i~~~d~i~~~ig-~~d~l-~-~~~stf 736 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVP-AEEATIGIVDGIFTRMG-AADNI-Y-KGRSTF 736 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBS-SSEEEEECCSEEEEEC-------------CCH
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcccc-chhhhhhHHHHHHHhCC-hHHHH-H-HhHHHh
Confidence 456778888899999999999999999999998743 33221 1100 011111000 00000 0 000000
Q ss_pred CCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHHHHHH-HHHHhhc-CCCcEEEEEeccccccc
Q psy17138 134 LPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVK-EEIARLS-ESHKVIVIEAAVLLSAK 195 (212)
Q Consensus 134 ~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~-~~i~~~~-~~~~~vvie~~~l~e~~ 195 (212)
..++.++..+... ..+|+ +++++...++|.....+. ..++.+. .....+++.+|++.-+.
T Consensus 737 -s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 737 -MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp -HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred -hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence 0112222233222 45665 457778888888776665 4555543 34567778899975443
No 171
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.08 E-value=1.2e-06 Score=69.71 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=31.1
Q ss_pred CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcccc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGH 111 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~ 111 (212)
+|.+|.|+|++||||||+++.|+ .++..+++.|.+.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~ 41 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLR 41 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHH
Confidence 56789999999999999999997 57888888765443
No 172
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.08 E-value=3.3e-06 Score=67.71 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=32.2
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL 109 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i 109 (212)
...++.+|.|+||+||||+|.++.|+ .+|++++++..+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdl 63 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDL 63 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHH
Confidence 35678899999999999999999997 579998886443
No 173
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.07 E-value=3.7e-06 Score=75.51 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHCCCCCccEEEeecccCC-------CCCC-cccccceechhhhhhhhccccCCCCC-------------C
Q psy17138 11 GGVKVNELRVANSLKPLDVVSVPLLPSD-------GKVD-EQEEDKLSSSNLRMRELGTLRKPVQP-------------K 69 (212)
Q Consensus 11 ~~~~in~~r~~~gl~~l~~~~i~~~~~~-------~~~~-~~~~~~iss~~~r~~~~g~~l~~~~~-------------~ 69 (212)
+-.-..+...+.|++||.+....|-... ..+. ..+-..+|++.+|....... .+|+. .
T Consensus 310 aq~i~~~~~~~l~i~pv~fd~~~y~~~~g~~i~~d~~p~~~~~~~~iSgt~IR~~Lr~G~-~~P~~f~rpeV~~vLr~~~ 388 (511)
T 1g8f_A 310 AQELVESYKHELDIEVVPFRMVTYLPDEDRYAPIDQIDTTKTRTLNISGTELRRRLRVGG-EIPEWFSYPEVVKILRESN 388 (511)
T ss_dssp HHHHHHHTHHHHCSEEECCCCEEEEGGGTEEEEGGGCSSSCCCCBCCCHHHHHHHHHHTC-CCCTTTSCHHHHHHHHHHS
T ss_pred HHHHHHhCccccCceEEeecceeEecccCeEEEcccCCCCcccccccCHHHHHHHHhCCC-CCCccccChhhHHHHHHhc
Confidence 3445566667889999988888776621 1122 13446799999988754222 23221 1
Q ss_pred CCCCCCCeEEEEecCCCCcHHHHHHHHH-HcCC-------eeeeCCc
Q psy17138 70 PHLSPYPYIIGLTGGIASGKSTIAKYLE-TLGA-------GLINCDQ 108 (212)
Q Consensus 70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~-------~vi~~D~ 108 (212)
+....++..|.|+|.+||||||+++.|+ .|+. .++|+|.
T Consensus 389 ~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 389 PPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 1123578999999999999999999998 4554 5667775
No 174
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.07 E-value=2.9e-06 Score=69.15 Aligned_cols=39 Identities=28% Similarity=0.362 Sum_probs=32.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH-cC--CeeeeCCcccc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET-LG--AGLINCDQLGH 111 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~-lg--~~vi~~D~i~~ 111 (212)
..+|.++.|+|++||||||+++.|+. ++ +.++++|.+.+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRS 70 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHH
Confidence 55689999999999999999999985 44 56778887644
No 175
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.06 E-value=1.2e-06 Score=69.34 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=29.9
Q ss_pred EEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccc
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHR 112 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~ 112 (212)
.|+|+|++||||||+++.|+. +|+.++++|.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~ 37 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRA 37 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHH
Confidence 589999999999999999985 89999998765444
No 176
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.05 E-value=8.4e-07 Score=79.13 Aligned_cols=35 Identities=23% Similarity=0.179 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+++++++...+ .+++|+||||||||||+++|+++
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 345567778888 99999999999999999999986
No 177
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.05 E-value=2.8e-06 Score=69.55 Aligned_cols=37 Identities=32% Similarity=0.300 Sum_probs=30.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH----cCCeee--eCCcccc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET----LGAGLI--NCDQLGH 111 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~----lg~~vi--~~D~i~~ 111 (212)
+|.+|.|+|++||||||+++.|+. +|+.++ +.|.+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 478999999999999999999985 688777 7775543
No 178
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.03 E-value=4.1e-06 Score=73.32 Aligned_cols=41 Identities=32% Similarity=0.324 Sum_probs=35.2
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL 109 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i 109 (212)
.++...++.+|.|+|++||||||+++.|. .+++.+++.|.+
T Consensus 251 ~~~~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 292 (416)
T 3zvl_A 251 SSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL 292 (416)
T ss_dssp SCSCCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred cccCCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence 34456678999999999999999999997 579999999876
No 179
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.03 E-value=3.1e-06 Score=70.69 Aligned_cols=27 Identities=26% Similarity=0.269 Sum_probs=24.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..++.+|||+|++||||||+++.|.++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999999864
No 180
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.02 E-value=2.8e-06 Score=71.50 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=24.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+|.+++|+|||||||||+++.|+++
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999999999975
No 181
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.02 E-value=2.5e-06 Score=70.56 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=21.5
Q ss_pred eEEEEecCCCCcHHHHHHHHHHc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+.++|+|+||||||||+++|.++
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999986
No 182
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.01 E-value=4.5e-06 Score=69.52 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=32.2
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH-c--CCeeeeCCccc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET-L--GAGLINCDQLG 110 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~-l--g~~vi~~D~i~ 110 (212)
..+|.+|.|+|+|||||||+++.|.. + ++.++++|.+.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 44688999999999999999999974 5 67888988653
No 183
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.01 E-value=3.4e-06 Score=71.68 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=25.0
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+|.+++|+|||||||||+++.|+++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999999975
No 184
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.00 E-value=6.2e-06 Score=67.17 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=35.9
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccccccccCCchhHHHHHHHhCC
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDVGTRGNQVVRELFGE 130 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~~~~~~~~~~~~~~~~~~~g~ 130 (212)
+.+|||+|++||||||+++.|.. +|++++ .++....+.+...||.
T Consensus 1 m~~i~ltG~~~sGK~tv~~~l~~~~g~~~~----------~~~~~~~~~~~~~~g~ 46 (241)
T 1dek_A 1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKY----------QLAGPIKDALAYAWGV 46 (241)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSCEEEC----------CTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCeEE----------ecChHHHHHHHHHccc
Confidence 36899999999999999999997 788763 3445566677777774
No 185
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.99 E-value=8.7e-07 Score=74.31 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+.+++|+|+||||||||+++|.++
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEECCCCCcHHHHHHHhccc
Confidence 5789999999999999999999986
No 186
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.98 E-value=4.4e-06 Score=66.00 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=24.1
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+-+|.+++|+||||||||||++.|.+.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 346889999999999999999999865
No 187
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.97 E-value=3.7e-06 Score=64.61 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=23.7
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..++..++|+||+||||||+++.+++.
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 445889999999999999999999853
No 188
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.96 E-value=1.7e-06 Score=75.98 Aligned_cols=34 Identities=24% Similarity=0.097 Sum_probs=30.2
Q ss_pred CCCCCCCCCCCeE--EEEecCCCCcHHHHHHHHHHc
Q psy17138 66 VQPKPHLSPYPYI--IGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 66 ~~~~~~~~~~~~i--igl~G~~GsGKSTl~~~L~~l 99 (212)
++++++...+|.+ ++|+|+||||||||+++|.++
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 5667788999999 999999999999999999986
No 189
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.95 E-value=4.2e-06 Score=65.78 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=23.8
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
-.+|.+|+|+|||||||||+++.|...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999999853
No 190
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.93 E-value=3.3e-06 Score=72.29 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 64 KPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 64 ~~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
++++.+ +...+|.++||+|+||||||||+++|+++
T Consensus 60 ~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 60 RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 445556 78889999999999999999999999986
No 191
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.93 E-value=3.8e-06 Score=71.61 Aligned_cols=33 Identities=27% Similarity=0.255 Sum_probs=28.6
Q ss_pred CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+++++...++.+++|+|+||||||||++.|.++
T Consensus 46 ~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 46 DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345566788999999999999999999999975
No 192
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.92 E-value=3.5e-06 Score=69.90 Aligned_cols=36 Identities=36% Similarity=0.234 Sum_probs=30.7
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH--cCCeeeeCCcccc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET--LGAGLINCDQLGH 111 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~--lg~~vi~~D~i~~ 111 (212)
+.+|.|+|++||||||+++.|+. +|+.+++.|.+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~ 39 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQ 39 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHH
Confidence 46899999999999999999986 4888998886543
No 193
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.92 E-value=5.9e-06 Score=66.79 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=31.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCccccccc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQLGHRAY 114 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i~~~~~ 114 (212)
-..+||+|++||||||+++.|+ .+|+++++++.+.++..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~ 47 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAV 47 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhc
Confidence 4578999999999999999997 48999999766555433
No 194
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.91 E-value=9e-06 Score=62.72 Aligned_cols=38 Identities=34% Similarity=0.339 Sum_probs=29.6
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc----CC--eeeeCCcc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL----GA--GLINCDQL 109 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~--~vi~~D~i 109 (212)
...++.+|.|+|++||||||+++.|+.. |. .+++.|.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 3556899999999999999999999853 32 45566654
No 195
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.91 E-value=4.1e-06 Score=66.19 Aligned_cols=26 Identities=50% Similarity=0.396 Sum_probs=23.4
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..+|.+|.|+|++||||||+++.|++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44588999999999999999999985
No 196
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.91 E-value=5.1e-06 Score=73.30 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=30.4
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.++++ +...+|.+++|+||||||||||+++|+++
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44556 78999999999999999999999999986
No 197
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.90 E-value=4.6e-06 Score=71.68 Aligned_cols=27 Identities=26% Similarity=0.171 Sum_probs=23.8
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..++.+++|+|||||||||++++|.++
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 456679999999999999999999864
No 198
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.90 E-value=4e-06 Score=64.33 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=24.2
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+++...++ +.+|+|+|||||||++++|..+
T Consensus 20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 20 VVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 33444456 8999999999999999999863
No 199
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.88 E-value=2.5e-06 Score=70.84 Aligned_cols=35 Identities=23% Similarity=0.142 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.++++++...+|.+++|+|+||||||||++.|+++
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 34445566888999999999999999999999864
No 200
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.86 E-value=9.8e-06 Score=62.86 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=23.5
Q ss_pred EEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-LGAGLI 104 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-lg~~vi 104 (212)
+|+|+|++||||||+++.|+. ++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 689999999999999999985 676554
No 201
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.86 E-value=1.2e-05 Score=68.69 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=29.6
Q ss_pred eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL 109 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i 109 (212)
.+|+|+||+||||||+++.|+ .++..++++|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 589999999999999999998 578888999865
No 202
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.86 E-value=3.6e-06 Score=64.95 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+.+++|+|+||||||||++.|.++
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999975
No 203
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.86 E-value=7.5e-06 Score=65.02 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=27.9
Q ss_pred eEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL 109 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i 109 (212)
++|.|+||+||||+|.++.|+ .+|++++++..+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdl 34 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDI 34 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHH
Confidence 367899999999999999997 579999985443
No 204
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.85 E-value=5.8e-06 Score=71.07 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=27.3
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+++...+|.+++|+|||||||||++++|.++
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4455668999999999999999999999986
No 205
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.85 E-value=9.2e-06 Score=63.68 Aligned_cols=25 Identities=32% Similarity=0.231 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+|.+|+|+|++||||||+++.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999984
No 206
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.84 E-value=1e-05 Score=69.91 Aligned_cols=27 Identities=30% Similarity=0.188 Sum_probs=24.8
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..++.+++|+|||||||||+++.|.++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 567899999999999999999999874
No 207
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.83 E-value=3.3e-05 Score=70.34 Aligned_cols=99 Identities=23% Similarity=0.257 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHCCCCCccEEEeecccC-------CCCCCcccccceechhhhhhhhccccCCCCC-------------CC
Q psy17138 11 GGVKVNELRVANSLKPLDVVSVPLLPS-------DGKVDEQEEDKLSSSNLRMRELGTLRKPVQP-------------KP 70 (212)
Q Consensus 11 ~~~~in~~r~~~gl~~l~~~~i~~~~~-------~~~~~~~~~~~iss~~~r~~~~g~~l~~~~~-------------~~ 70 (212)
+..-+.+...+.|++|+.+....|... +..+.......+|++.+|....... .++.. .+
T Consensus 312 a~~i~~~~~~~l~i~~v~fd~~~y~~~~g~~i~id~~~~~~~~~~iSgt~ir~~l~~g~-~~p~w~~~~eVsr~lRe~~~ 390 (573)
T 1m8p_A 312 AQHAVEKYKDELGIEVVEFQMVTYLPDTDEYRPVDQVPAGVKTLNISGTELRRRLRSGA-HIPEWFSYPEVVKILRESNP 390 (573)
T ss_dssp HHHHHHHHHHHHCCEEEECCCCCBBTTTTBCCCSSSSCTTSCCBCCCHHHHHHHHHHTC-CCCTTTSCHHHHHHHHTTSC
T ss_pred HHHHHHhhhhhcCceeEeccceEEEcCCCcEEecccCCCCceeecCChHHHHHHHhccC-CCCcccccccccHHHHHhcc
Confidence 344556677788999988888777663 1122344556799998887643211 11111 11
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHH-cC------CeeeeCCccc
Q psy17138 71 HLSPYPYIIGLTGGIASGKSTIAKYLET-LG------AGLINCDQLG 110 (212)
Q Consensus 71 ~~~~~~~iigl~G~~GsGKSTl~~~L~~-lg------~~vi~~D~i~ 110 (212)
....++.+|.|+|.+||||||+++.|+. |+ +.+++.|.+.
T Consensus 391 ~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 391 PRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp CTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred cccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 1345678999999999999999999984 33 3455666543
No 208
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.83 E-value=1.5e-05 Score=67.61 Aligned_cols=34 Identities=38% Similarity=0.452 Sum_probs=30.0
Q ss_pred CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL 109 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i 109 (212)
+.+|.|+||+||||||+++.|+ .++..++++|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4689999999999999999998 578889998864
No 209
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.82 E-value=3.6e-06 Score=75.73 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=35.1
Q ss_pred cCCCCCCCC-CCCCCeEEEEecCCCCcHHHHHHH--HHHc-----CCeeeeCC
Q psy17138 63 RKPVQPKPH-LSPYPYIIGLTGGIASGKSTIAKY--LETL-----GAGLINCD 107 (212)
Q Consensus 63 l~~~~~~~~-~~~~~~iigl~G~~GsGKSTl~~~--L~~l-----g~~vi~~D 107 (212)
...++++++ ..++|.+++|+|+||||||||+++ ++++ |..+++..
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 345667788 888999999999999999999999 5554 44455543
No 210
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.81 E-value=1.3e-05 Score=62.54 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH-cCC
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET-LGA 101 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~ 101 (212)
++.+|.|.|++||||||+++.|+. ++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 367999999999999999999985 544
No 211
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.81 E-value=1.6e-05 Score=69.74 Aligned_cols=26 Identities=35% Similarity=0.057 Sum_probs=23.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.++.+++|+|||||||||+++.|.++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 56889999999999999999999875
No 212
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.81 E-value=1.7e-05 Score=67.65 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=31.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCcc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQL 109 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~i 109 (212)
.++.+|.|+||+|||||||+..|+ .++..+|++|..
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 345799999999999999999998 578899999865
No 213
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.81 E-value=1e-05 Score=65.05 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=32.2
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCccc
Q psy17138 71 HLSPYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLG 110 (212)
Q Consensus 71 ~~~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i~ 110 (212)
++..+..+|+|.|++||||||+++.|+. ||++++|.|.+.
T Consensus 9 ~m~~~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~ 49 (223)
T 3hdt_A 9 FMGNKNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILK 49 (223)
T ss_dssp ---CCCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHH
T ss_pred ccCCCCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHH
Confidence 4455578999999999999999999984 899999976543
No 214
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.80 E-value=1.4e-05 Score=66.04 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc-CCee
Q psy17138 68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL-GAGL 103 (212)
Q Consensus 68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l-g~~v 103 (212)
.+++.+++| ++|.|||||||||++++|++. +...
T Consensus 38 ~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~ 72 (274)
T 2x8a_A 38 ALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNF 72 (274)
T ss_dssp HTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred HcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCE
Confidence 345566777 999999999999999999863 4433
No 215
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.79 E-value=1.3e-05 Score=61.50 Aligned_cols=23 Identities=30% Similarity=0.156 Sum_probs=20.9
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+.+|.|+|++||||||+++.|+.
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 216
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.77 E-value=7.1e-06 Score=77.42 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 65 ~~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.++++++. ..|.+++|+|||||||||++|+++++
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45566667 78999999999999999999999864
No 217
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.74 E-value=2.9e-05 Score=65.34 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=26.6
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+...+|.+++|+|++||||||+++.|+++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 3445678999999999999999999999864
No 218
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.74 E-value=7.3e-06 Score=63.94 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=26.1
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 71 HLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 71 ~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...++..++|+|++|||||||++.|.+.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 55778999999999999999999999864
No 219
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.74 E-value=1.1e-05 Score=60.72 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=23.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
++..++|+|++|||||||++++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999864
No 220
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.72 E-value=1.6e-05 Score=62.80 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=28.9
Q ss_pred CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQ 108 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~ 108 (212)
..+|+|.|++||||||+++.|+ .||++++|.+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D~~~ 39 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYSKEL 39 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEECHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEECHHH
Confidence 4589999999999999999998 58999998443
No 221
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.70 E-value=4e-05 Score=64.84 Aligned_cols=33 Identities=18% Similarity=0.061 Sum_probs=28.9
Q ss_pred CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.++++...++.+++|+|++||||||++..|+++
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356777888999999999999999999999863
No 222
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.69 E-value=2.8e-05 Score=62.52 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=24.2
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+|.+|.|.|++||||||+++.|++.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 447899999999999999999999853
No 223
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.68 E-value=1.9e-05 Score=67.91 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=23.2
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+|.+++|+|+||||||||+++|.++
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhcc
Confidence 4789999999999999999999975
No 224
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.67 E-value=1.1e-05 Score=75.65 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=25.8
Q ss_pred CCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 66 VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 66 ~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
++++++. |.+++|+|||||||||++|+++++
T Consensus 569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEES---SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred eeeccCC---CcEEEEECCCCCChHHHHHHHHhh
Confidence 3344444 899999999999999999999874
No 225
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.67 E-value=2.9e-05 Score=62.79 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=24.4
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+++..++| +.|+|||||||||++++|++.
T Consensus 44 ~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 44 MGARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp TTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 45556666 899999999999999999864
No 226
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.67 E-value=1.8e-05 Score=68.44 Aligned_cols=31 Identities=32% Similarity=0.222 Sum_probs=27.2
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+++..+++.+++|+|||||||||+++.|++.
T Consensus 162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456778999999999999999999999864
No 227
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.67 E-value=1.9e-05 Score=66.54 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+..+++|+|++||||||+++.|.++
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3578999999999999999999965
No 228
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.65 E-value=3.6e-05 Score=65.01 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=29.3
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCeeeeCCcc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQL 109 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~~D~i 109 (212)
+.+|.|+||+|||||||+..|+. ++..++++|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 56899999999999999999984 67788888854
No 229
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.65 E-value=2.3e-05 Score=62.43 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=24.1
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.++|.+++|+|+|||||||+++.|+.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 55699999999999999999999987
No 230
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.65 E-value=2.7e-05 Score=65.21 Aligned_cols=25 Identities=32% Similarity=0.246 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+.+++|+|+||||||||+++|. +
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-S
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-H
Confidence 347899999999999999999999 7
No 231
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.64 E-value=4.2e-05 Score=60.47 Aligned_cols=35 Identities=34% Similarity=0.346 Sum_probs=30.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCcc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQL 109 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i 109 (212)
.+..+.|+||+||||||++..|...|..+++.|.+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~~iIsdDs~ 67 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGHRLIADDRV 67 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTCEEEESSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCCeEEecchh
Confidence 47889999999999999999999887788877743
No 232
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.63 E-value=1.8e-05 Score=71.15 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=26.1
Q ss_pred CCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 70 PHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 70 ~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
++...+|..++|+||+||||||++++|.++
T Consensus 254 ~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 254 WLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344567888999999999999999999976
No 233
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.63 E-value=5.3e-05 Score=63.83 Aligned_cols=34 Identities=41% Similarity=0.467 Sum_probs=29.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQ 108 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~ 108 (212)
.+.++.|+||+|||||||+..|+ .++..++++|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 46789999999999999999998 57888888875
No 234
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.60 E-value=3.8e-05 Score=59.38 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=24.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHcCC
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETLGA 101 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~lg~ 101 (212)
.....++|+|++|||||||++.|.+..+
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 3457899999999999999999998643
No 235
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.60 E-value=4.3e-05 Score=62.78 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=24.8
Q ss_pred CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+++..++| +.|+|||||||||++++|++.
T Consensus 67 ~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 67 EMGARIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HTTCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HcCCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 345556666 899999999999999999864
No 236
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.57 E-value=1.9e-05 Score=61.88 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.7
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q psy17138 78 IIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~ 98 (212)
+|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999985
No 237
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.57 E-value=2e-05 Score=76.13 Aligned_cols=133 Identities=13% Similarity=-0.003 Sum_probs=66.6
Q ss_pred CCCCCCCCCCCC-------CeEEEEecCCCCcHHHHHHHHHHc-------CCeeeeCCc----cccccccCCchhHHHHH
Q psy17138 64 KPVQPKPHLSPY-------PYIIGLTGGIASGKSTIAKYLETL-------GAGLINCDQ----LGHRAYDVGTRGNQVVR 125 (212)
Q Consensus 64 ~~~~~~~~~~~~-------~~iigl~G~~GsGKSTl~~~L~~l-------g~~vi~~D~----i~~~~~~~~~~~~~~~~ 125 (212)
..++++++.... |.+++|+|||||||||++|++ ++ |..+.. +. +...++..-+ . ...+
T Consensus 770 ~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq-~~~~l~v~d~I~~rig-~-~d~~ 845 (1022)
T 2o8b_B 770 FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPA-EVCRLTPIDRVFTRLG-A-SDRI 845 (1022)
T ss_dssp CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEES-SEEEECCCSBEEEECC-------
T ss_pred eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEecc-CcCCCCHHHHHHHHcC-C-HHHH
Confidence 355666666655 899999999999999999999 64 433321 11 0001110000 0 0000
Q ss_pred HHhCCccCCCCCccchHhHHHHhcCChH--HHHHHHhhhhHHHH-HHHHHHHHhhc-CCCcEEEEEeccccccccccccC
Q psy17138 126 ELFGEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLIL-AQVKEEIARLS-ESHKVIVIEAAVLLSAKWQDQVH 201 (212)
Q Consensus 126 ~~~g~~~~~~~~~~~r~~l~~~vf~~~~--~~~~~~~i~~p~~~-~~~~~~i~~~~-~~~~~vvie~~~l~e~~~~~~~d 201 (212)
.. |..-+ .+...+..++.....+|+ +++++...++|.-. ..++..++.+. .....+++.+|++..+ ..+||
T Consensus 846 ~~-~~stf--~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~--~~~~d 920 (1022)
T 2o8b_B 846 MS-GESTF--FVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLV--EDYSQ 920 (1022)
T ss_dssp -----CHH--HHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHH--HHTSS
T ss_pred hh-chhhh--HHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH--HHhCC
Confidence 00 00000 001112223333445555 34556666666653 33556666554 3256777789997654 23566
Q ss_pred eEEE
Q psy17138 202 EIWV 205 (212)
Q Consensus 202 ~v~~ 205 (212)
++++
T Consensus 921 ~~~v 924 (1022)
T 2o8b_B 921 NVAV 924 (1022)
T ss_dssp CSSE
T ss_pred ccee
Confidence 5544
No 238
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.54 E-value=5.2e-05 Score=58.76 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHcC
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETLG 100 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~lg 100 (212)
...++|+|++|||||||++.|.+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4679999999999999999999863
No 239
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.53 E-value=1.2e-05 Score=67.64 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=24.2
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...+|.+++|+|+||||||||++.|.++
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence 3456899999999999999999999865
No 240
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.52 E-value=4e-05 Score=63.03 Aligned_cols=27 Identities=22% Similarity=0.058 Sum_probs=24.3
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..++|.+++|+|+||||||||++.|++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999999985
No 241
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.52 E-value=6.2e-06 Score=66.56 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.2
Q ss_pred eEEEEecCCCCcHHHHHHHHHHc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+++|+|||||||||++++|+++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 57799999999999999999976
No 242
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.52 E-value=3.5e-05 Score=66.22 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=26.1
Q ss_pred CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..+++...+| +.+|+|||||||||++++|..
T Consensus 18 ~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 18 APGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 3455566667 999999999999999999986
No 243
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.50 E-value=4.6e-05 Score=65.14 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=26.2
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 71 HLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 71 ~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...++|.+++|+|+||||||||++.|+++
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999999865
No 244
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.49 E-value=6.5e-05 Score=57.83 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=20.9
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
++.+++|+|++||||||++..|..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998874
No 245
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.48 E-value=7.2e-05 Score=57.77 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.9
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..+++|+|++||||||+++.|.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999999874
No 246
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.46 E-value=8.6e-05 Score=55.69 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=20.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE 97 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~ 97 (212)
+.+.+|+|||||||||++.+|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4588999999999999999997
No 247
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.45 E-value=6.6e-05 Score=62.78 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=27.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc-----CC--eeeeCCc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL-----GA--GLINCDQ 108 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l-----g~--~vi~~D~ 108 (212)
.++.+++|+|++||||||++..|++. |. .++++|.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 46889999999999999999999842 53 3456664
No 248
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.43 E-value=6.9e-05 Score=63.38 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHHc-CC
Q psy17138 77 YIIGLTGGIASGKSTIAKYLETL-GA 101 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~l-g~ 101 (212)
..++|.|||||||||++++|++. ++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 56899999999999999999864 44
No 249
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.40 E-value=0.00011 Score=62.85 Aligned_cols=26 Identities=35% Similarity=0.738 Sum_probs=23.3
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+.+++|+|++|||||||++.|.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999863
No 250
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.39 E-value=0.00013 Score=60.84 Aligned_cols=31 Identities=26% Similarity=0.070 Sum_probs=26.6
Q ss_pred CCCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 67 ~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.++++. ++.+++++|++||||||++..|+++
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445555 7999999999999999999999864
No 251
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.39 E-value=0.00011 Score=63.96 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=28.4
Q ss_pred CeEEEEecCCCCcHHHHHHHHH-HcCCeeeeCCc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLINCDQ 108 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~~D~ 108 (212)
..+|+|+||+|||||||+..|+ .++..++++|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 4578999999999999999997 56778888775
No 252
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.38 E-value=9.8e-05 Score=64.17 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=25.2
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...++..+||+|+||||||||+++|.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567899999999999999999999983
No 253
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.38 E-value=5.5e-05 Score=69.32 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=20.5
Q ss_pred EEEecCCCCcHHHHHHHHHHc
Q psy17138 79 IGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 79 igl~G~~GsGKSTl~~~L~~l 99 (212)
++|+|+||||||||+++|.|+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSC
T ss_pred EEEECCCCChHHHHHHHHhCC
Confidence 999999999999999999987
No 254
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.37 E-value=0.00021 Score=55.28 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=29.7
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCcc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQL 109 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i 109 (212)
.|.-+.|+|+||+||||++..|...|+.++.-|.+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~rG~~lvaDD~v 49 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDRGHQLVCDDVI 49 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHTTCEEEESSEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcCCeEecCCEE
Confidence 36778999999999999999999888887765543
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.36 E-value=0.0001 Score=57.49 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=18.3
Q ss_pred EEEecCCCCcHHHHHHHHHH
Q psy17138 79 IGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 79 igl~G~~GsGKSTl~~~L~~ 98 (212)
|.|+||||||||||++.|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77999999999999999964
No 256
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.36 E-value=0.0001 Score=64.49 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.8
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...+.+++|+|||||||||++++|..+
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345789999999999999999999864
No 257
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.35 E-value=0.00011 Score=55.74 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHcC
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETLG 100 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~lg 100 (212)
++..++|+|++|+|||||++.|.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998653
No 258
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.35 E-value=0.00065 Score=57.93 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+..+|+|+|++|+||||++..|..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999974
No 259
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.34 E-value=0.00013 Score=58.63 Aligned_cols=29 Identities=34% Similarity=0.421 Sum_probs=24.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH-c-CCee
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET-L-GAGL 103 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~-l-g~~v 103 (212)
+|.+|+|.|+.||||||+++.|+. + +..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 478999999999999999999985 4 4433
No 260
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.30 E-value=0.00017 Score=66.15 Aligned_cols=32 Identities=31% Similarity=0.314 Sum_probs=27.1
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH-c---CCeeeeC
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET-L---GAGLINC 106 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~-l---g~~vi~~ 106 (212)
++.+|.|+|.+||||||+++.|+. | |..+++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 588999999999999999999985 4 7766543
No 261
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.28 E-value=0.00015 Score=54.48 Aligned_cols=24 Identities=42% Similarity=0.436 Sum_probs=21.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...++|+|++|+|||||++.|.+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999999864
No 262
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.26 E-value=8.6e-05 Score=60.51 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=25.6
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHH-c-CCeee
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLET-L-GAGLI 104 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~-l-g~~vi 104 (212)
+..++.+|.|.|++||||||+++.|+. + +..++
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 345789999999999999999999985 4 44444
No 263
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.24 E-value=8.4e-05 Score=62.58 Aligned_cols=62 Identities=6% Similarity=0.028 Sum_probs=41.9
Q ss_pred ccchHhHHHHhc----CChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeE
Q psy17138 138 SIDRKKLGAIVF----SNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEI 203 (212)
Q Consensus 138 ~~~r~~l~~~vf----~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v 203 (212)
+.+|-.++..+. .+|. +++++.+.++|.....+.+.+++... ...+++.+|.. + +...||++
T Consensus 224 q~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~tH~~-~--~~~~~d~~ 291 (322)
T 1e69_A 224 EKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK-I--VMEAADLL 291 (322)
T ss_dssp HHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT-T--GGGGCSEE
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEECCH-H--HHhhCceE
Confidence 344555665442 4554 55778888999999999988887743 45667778884 3 34578876
No 264
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.23 E-value=0.00094 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+.+|.|-|+.||||||.++.|+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 57899999999999999999985
No 265
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.23 E-value=0.00013 Score=61.04 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.1
Q ss_pred eEEEEecCCCCcHHHHHHHHHHc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+.|+|+|+||||||||++.|.++
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 56799999999999999998864
No 266
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.22 E-value=0.00015 Score=63.57 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.3
Q ss_pred eEEEEecCCCCcHHHHHHHHHHcC
Q psy17138 77 YIIGLTGGIASGKSTIAKYLETLG 100 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~lg 100 (212)
+.|+|+|+||||||||++.|.++.
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCC
Confidence 456999999999999999999763
No 267
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.21 E-value=0.00025 Score=56.42 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=22.2
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+|.+|.|.|++||||||+++.|..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999999974
No 268
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.19 E-value=0.00017 Score=57.39 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.0
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLE 97 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~ 97 (212)
.++|.++.|+|+|||||||++..++
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999987765
No 269
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.19 E-value=0.00026 Score=53.80 Aligned_cols=25 Identities=40% Similarity=0.391 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...++|+|++|+|||||++.|.+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 270
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.17 E-value=0.00019 Score=60.97 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.8
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...++.+++|+|++||||||+++.|.+.
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999999853
No 271
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.15 E-value=0.00029 Score=55.41 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=20.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE 97 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~ 97 (212)
+.+..|+|+|||||||++.+|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 4688999999999999999996
No 272
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.14 E-value=0.00072 Score=54.54 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=23.8
Q ss_pred EEEecCCCCcHHHHHHHHHH-cCCeee--eCCcc
Q psy17138 79 IGLTGGIASGKSTIAKYLET-LGAGLI--NCDQL 109 (212)
Q Consensus 79 igl~G~~GsGKSTl~~~L~~-lg~~vi--~~D~i 109 (212)
+.|+||+|+||||+++.|++ ++.+++ ++..+
T Consensus 48 vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~ 81 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred EEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence 88999999999999999985 454443 44443
No 273
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.13 E-value=0.00024 Score=59.30 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.++.+++|+|++|||||||++.|.+.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 45668999999999999999999975
No 274
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.12 E-value=0.0002 Score=62.38 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=23.1
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLE 97 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~ 97 (212)
-..+|.++.|+|+||||||||++.|+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 35679999999999999999999775
No 275
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.11 E-value=0.00037 Score=55.90 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..+|.+|.+.|++||||||+++.|..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999999974
No 276
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.10 E-value=0.00031 Score=59.51 Aligned_cols=64 Identities=3% Similarity=-0.022 Sum_probs=46.0
Q ss_pred hHHHHhcCChH--HHHHHHhhhhHHHHHHHHHHHHhhcCCCcEEEEEeccccccccccccCeEEEEEeC
Q psy17138 143 KLGAIVFSNKD--EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIWVTFIP 209 (212)
Q Consensus 143 ~l~~~vf~~~~--~~~~~~~i~~p~~~~~~~~~i~~~~~~~~~vvie~~~l~e~~~~~~~d~v~~v~~~ 209 (212)
.++..+..+|. +++++.+.++|.....+.+.+.+.......+++-+|.. + +.+.||+++.+...
T Consensus 264 ~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~-~--~~~~~d~~~~l~~~ 329 (339)
T 3qkt_A 264 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-E--LKDAADHVIRISLE 329 (339)
T ss_dssp HHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG-G--GGGGCSEEEEEEEE
T ss_pred HHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH-H--HHHhCCEEEEEEec
Confidence 44455666766 45778888999999999888877653334666668883 3 45789999988753
No 277
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.08 E-value=0.00031 Score=56.78 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=22.2
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+|.+|.|.|++||||||+++.|..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999974
No 278
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.07 E-value=0.00055 Score=57.67 Aligned_cols=35 Identities=31% Similarity=0.305 Sum_probs=29.9
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCcc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQL 109 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~i 109 (212)
.|.-+.|+|+||+||||++..|.+.|+.++.-|.+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~ 177 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRGHRLVADDNV 177 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeE
Confidence 47889999999999999999999988877755543
No 279
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.06 E-value=0.00055 Score=56.89 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=25.1
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLI 104 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi 104 (212)
..+..+.|.||+||||||+++.++. ++.+++
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i 78 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFI 78 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEE
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEE
Confidence 3466789999999999999999985 565554
No 280
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.06 E-value=0.00023 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..++|+|++|||||||++.|.+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999863
No 281
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.06 E-value=0.0006 Score=59.80 Aligned_cols=30 Identities=27% Similarity=0.056 Sum_probs=25.6
Q ss_pred CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
++++. ++.+++++|++||||||++..|+.+
T Consensus 92 ~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp CCCCC--SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44554 7899999999999999999999853
No 282
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.03 E-value=8.2e-05 Score=65.16 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=27.1
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+++....+..++|+|+||||||||++.|.+.
T Consensus 150 i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 150 LRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 4556677889999999999999999999875
No 283
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.02 E-value=0.00027 Score=56.82 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=19.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+|.+|.|.|++||||||+++.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999974
No 284
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.00 E-value=0.00052 Score=60.34 Aligned_cols=35 Identities=43% Similarity=0.598 Sum_probs=27.5
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc----CC--eeeeCCc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL----GA--GLINCDQ 108 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l----g~--~vi~~D~ 108 (212)
.++.+++++|++||||||++..|+.. |. .++++|.
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 36899999999999999999999842 43 3456663
No 285
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.99 E-value=0.00055 Score=61.26 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCeEEEEecCCCCcHHHHHHHHHH-cCCe--eeeCCc
Q psy17138 66 VQPKPHLSPYPYIIGLTGGIASGKSTIAKYLET-LGAG--LINCDQ 108 (212)
Q Consensus 66 ~~~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~--vi~~D~ 108 (212)
...+.+..++| +.|+||+|||||||+++|++ ++.+ .+++..
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~ 99 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFITASGSD 99 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhCCCEEEEehhH
Confidence 34455566666 89999999999999999986 3433 344433
No 286
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.98 E-value=0.00048 Score=57.13 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=25.4
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHH-HcCCeee
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLE-TLGAGLI 104 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi 104 (212)
...+..+.|.||+|+|||++++.++ .+|.+++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i 65 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPI 65 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3446678889999999999999998 4566554
No 287
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.98 E-value=0.0004 Score=62.73 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=23.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
++..+.|+|||||||||++++|+++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999999864
No 288
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.98 E-value=0.00045 Score=54.93 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+|.+|.+.|++||||||.++.|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999999974
No 289
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.96 E-value=0.00051 Score=54.79 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=23.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH-cCC
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET-LGA 101 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~ 101 (212)
+|.+|.+.|++||||||+++.|.. ++.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 588999999999999999999985 443
No 290
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.96 E-value=0.00064 Score=50.95 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=23.0
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..+...|+|+|++|||||||++.|.+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44577899999999999999999985
No 291
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.95 E-value=0.00057 Score=57.08 Aligned_cols=39 Identities=36% Similarity=0.455 Sum_probs=29.4
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc----CC--eeeeCCc
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL----GA--GLINCDQ 108 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l----g~--~vi~~D~ 108 (212)
+++..+ +.+++++|++||||||++..|+.. |. .++++|.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 445544 999999999999999999999853 32 3456663
No 292
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.94 E-value=0.00081 Score=55.28 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=23.9
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGLI 104 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi 104 (212)
+.-+.|.||+|+||||+++.+++ ++.+++
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 55688999999999999999984 565544
No 293
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.94 E-value=0.00061 Score=50.37 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=22.2
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+++|++|||||||++.|.+-
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence 34678999999999999999999864
No 294
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.00067 Score=51.74 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|++|||||||++.|.+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999875
No 295
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.89 E-value=0.00069 Score=50.78 Aligned_cols=26 Identities=12% Similarity=0.080 Sum_probs=22.2
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|++|||||||++.|.+-
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 44678999999999999999999763
No 296
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.89 E-value=0.00057 Score=54.59 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.....|+|+|++|+|||||++.|.+.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 34678999999999999999999864
No 297
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.89 E-value=0.0012 Score=58.15 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=27.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH----cC--CeeeeCCc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET----LG--AGLINCDQ 108 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~----lg--~~vi~~D~ 108 (212)
++.+|.++|++||||||++..|+. .| ..++++|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999998873 24 34567774
No 298
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.88 E-value=0.00072 Score=49.76 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.3
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...|+++|++|||||||++.|.+-
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999853
No 299
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.87 E-value=0.00073 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=20.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+..+.|+|++|+||||+++.+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999974
No 300
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.87 E-value=0.00068 Score=53.32 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+..+.|.||+|+||||+++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999974
No 301
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.87 E-value=0.00061 Score=55.68 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.8
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...|+|+|++|||||||++.|.+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999875
No 302
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.87 E-value=0.0029 Score=49.43 Aligned_cols=27 Identities=37% Similarity=0.406 Sum_probs=22.1
Q ss_pred EEEEecCCCCcHHHHHHHHHH----cCCeee
Q psy17138 78 IIGLTGGIASGKSTIAKYLET----LGAGLI 104 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~----lg~~vi 104 (212)
+|.|-|+.||||||.++.|+. .|..++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~ 32 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 688999999999999999874 366554
No 303
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.86 E-value=0.0007 Score=49.67 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...|+++|++|||||||++.|.+-
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 304
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.86 E-value=0.00083 Score=50.26 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|.+|||||||++.|.+-
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999864
No 305
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.86 E-value=0.0009 Score=50.99 Aligned_cols=28 Identities=21% Similarity=0.193 Sum_probs=24.0
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.......|+|+|++|+|||||++.|.+.
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3445688999999999999999999864
No 306
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.86 E-value=0.00083 Score=49.35 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.8
Q ss_pred eEEEEecCCCCcHHHHHHHHHHc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..++++|++|||||||++.|.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 307
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.84 E-value=0.00094 Score=49.17 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=21.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...|+++|.+|||||||++.|.+-
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999864
No 308
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.83 E-value=0.0012 Score=53.83 Aligned_cols=30 Identities=37% Similarity=0.382 Sum_probs=24.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCeeee
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGLIN 105 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~ 105 (212)
+.-+.|.||+|+||||+++.++. ++.+++.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 44588999999999999999984 6666543
No 309
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.83 E-value=0.00064 Score=58.29 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.++|.++.|.||+|||||||+..++.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999999999974
No 310
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.82 E-value=0.0011 Score=50.43 Aligned_cols=26 Identities=31% Similarity=0.261 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.....|+|+|++|||||||++.|.+-
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999864
No 311
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.82 E-value=0.00074 Score=50.34 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...|+|+|++|+|||||++.|.+.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 3577999999999999999999853
No 312
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.81 E-value=0.0011 Score=52.27 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=26.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH-cC---Ceeee
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET-LG---AGLIN 105 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg---~~vi~ 105 (212)
....+|+|+|.+||||+|+++.+.. +| +.++.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~ 44 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLR 44 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEEC
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEE
Confidence 4578999999999999999999987 75 44454
No 313
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.80 E-value=0.0011 Score=49.26 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=22.2
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+...|+++|++|||||||++.|.+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3467899999999999999999975
No 314
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.79 E-value=0.00088 Score=50.93 Aligned_cols=26 Identities=31% Similarity=0.190 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|++|+|||||++.|.+-
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45788999999999999999999854
No 315
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.79 E-value=0.00096 Score=49.23 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.3
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...|+++|.+|||||||++.|.+-
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999863
No 316
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.78 E-value=0.00085 Score=49.68 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
...|+++|++|||||||++.|.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 56799999999999999999985
No 317
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.77 E-value=0.00087 Score=63.29 Aligned_cols=34 Identities=29% Similarity=0.191 Sum_probs=27.6
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHHc-CCeee
Q psy17138 71 HLSPYPYIIGLTGGIASGKSTIAKYLETL-GAGLI 104 (212)
Q Consensus 71 ~~~~~~~iigl~G~~GsGKSTl~~~L~~l-g~~vi 104 (212)
+....+..+.|+||+||||||++++|++. +..++
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i 267 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 267 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEE
Confidence 34667888999999999999999999974 55443
No 318
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.76 E-value=0.00094 Score=49.42 Aligned_cols=24 Identities=25% Similarity=0.115 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...|+|+|++|||||||++.|.+-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 467999999999999999999864
No 319
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.76 E-value=0.00072 Score=56.90 Aligned_cols=20 Identities=30% Similarity=0.213 Sum_probs=19.3
Q ss_pred EEEecCCCCcHHHHHHHHHH
Q psy17138 79 IGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 79 igl~G~~GsGKSTl~~~L~~ 98 (212)
+.|+||+|+||||+++.|++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999987
No 320
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.75 E-value=0.0018 Score=52.09 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHH-----HcCCeeeeCCc
Q psy17138 71 HLSPYPYIIGLTGGIASGKSTIAKYLE-----TLGAGLINCDQ 108 (212)
Q Consensus 71 ~~~~~~~iigl~G~~GsGKSTl~~~L~-----~lg~~vi~~D~ 108 (212)
..-.+..++.++|..|+||||++..|+ +....++++|.
T Consensus 9 ~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 9 HHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp CTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred cCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 345668899999999999999999998 44455677774
No 321
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.75 E-value=0.00094 Score=51.69 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=20.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHH
Q psy17138 77 YIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..+.|.|++|+||||+++.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999974
No 322
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.75 E-value=0.0009 Score=49.61 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...|+++|++|||||||++.|.+-
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999854
No 323
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.74 E-value=0.00092 Score=50.84 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...|+++|.+|||||||++.|.+-
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3478999999999999999999853
No 324
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.73 E-value=0.0011 Score=52.30 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.7
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+...|+|+|.+|+|||||++.|.+-
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356789999999999999999999754
No 325
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.73 E-value=0.0011 Score=50.24 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.....|+|+|++|||||||++.|.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999999864
No 326
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.73 E-value=0.0012 Score=49.32 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+...|+|+|++|||||||++.|.+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHh
Confidence 3457899999999999999999975
No 327
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.73 E-value=0.00076 Score=50.82 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+...|+|+|++|||||||++.|.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999999873
No 328
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.72 E-value=0.0011 Score=59.55 Aligned_cols=38 Identities=32% Similarity=0.436 Sum_probs=28.6
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH-c---C--CeeeeCCccc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET-L---G--AGLINCDQLG 110 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~-l---g--~~vi~~D~i~ 110 (212)
...+.+|.++|.+||||||+++.|+. + + ..+++.|.+.
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 45678999999999999999999974 3 2 2346666553
No 329
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.72 E-value=0.0009 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=20.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+..+.|+|++|+||||+++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 44578999999999999999974
No 330
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.72 E-value=0.0011 Score=50.61 Aligned_cols=26 Identities=27% Similarity=0.132 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|++|||||||++.|.+-
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999999853
No 331
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.71 E-value=0.0011 Score=58.02 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=23.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHcC
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETLG 100 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~lg 100 (212)
.....++|+|+||||||||++.|.+..
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 346899999999999999999999763
No 332
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.70 E-value=0.0011 Score=49.39 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+...|+|+|.+|||||||++.|.+-
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcC
Confidence 345688999999999999999999864
No 333
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.69 E-value=0.00089 Score=50.71 Aligned_cols=28 Identities=18% Similarity=0.051 Sum_probs=22.2
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...+...|+|+|.+|+|||||++.|.+-
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3556789999999999999999999854
No 334
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.69 E-value=0.0012 Score=50.37 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=23.4
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+...|+|+|.+|+|||||++.|.+-
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 445678999999999999999999864
No 335
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.69 E-value=0.0008 Score=61.40 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.4
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
....+..+.|+||+||||||+++.|+++
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 3445678999999999999999999986
No 336
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.69 E-value=0.0012 Score=51.71 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+...++|+|.+||||||+++.|..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999874
No 337
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.68 E-value=0.0012 Score=49.98 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|++|||||||++.|.+-
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 44678999999999999999999863
No 338
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.68 E-value=0.0017 Score=53.54 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=21.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...+.|+||+|+||||+++.|+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 357899999999999999999864
No 339
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.68 E-value=0.00088 Score=56.42 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=19.4
Q ss_pred EEEecCCCCcHHHHHHHHHHc
Q psy17138 79 IGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 79 igl~G~~GsGKSTl~~~L~~l 99 (212)
+.+.||+|+||||+++++++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999864
No 340
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.66 E-value=0.0011 Score=49.99 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...|+|+|++|||||||++.|.+-
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999999864
No 341
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.66 E-value=0.001 Score=49.69 Aligned_cols=25 Identities=24% Similarity=0.188 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...|+|+|++|||||||++.|.+-
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3567999999999999999999854
No 342
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.65 E-value=0.0014 Score=55.87 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHc
Q psy17138 78 IIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~l 99 (212)
.|+|+|.+|||||||++.|.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999974
No 343
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.64 E-value=0.0011 Score=54.65 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=22.0
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...|+|+|.+|||||||++.|.+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 568999999999999999999974
No 344
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.64 E-value=0.0014 Score=48.35 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...|+++|++|||||||++.|.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999864
No 345
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.64 E-value=0.0014 Score=49.31 Aligned_cols=25 Identities=16% Similarity=0.014 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...|+|+|++|||||||++.|.+-
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 4578999999999999999999864
No 346
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.64 E-value=0.0014 Score=48.44 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...|+++|++|||||||++.|.+-
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999864
No 347
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.64 E-value=0.0009 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.5
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+...|+|+|.+|+|||||++.|.+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 356799999999999999999985
No 348
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.64 E-value=0.0011 Score=50.82 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=20.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
...|+++|++|+|||||++.|.+
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999986
No 349
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.61 E-value=0.0015 Score=50.87 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|.|+|++|||||||++.|.+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34677999999999999999999864
No 350
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.60 E-value=0.0015 Score=56.78 Aligned_cols=31 Identities=6% Similarity=-0.118 Sum_probs=27.0
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+...+|..++|+|++|||||||++.|+..
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4456788999999999999999999999753
No 351
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.60 E-value=0.0016 Score=52.27 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=23.6
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET-LGAGLI 104 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi 104 (212)
.+.-+.|.||+|+||||+++.++. ++.+++
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 345578999999999999999984 555544
No 352
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.60 E-value=0.0016 Score=50.16 Aligned_cols=28 Identities=36% Similarity=0.294 Sum_probs=22.2
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...+...|+|+|.+|+|||||++.|.+-
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3556789999999999999999999864
No 353
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.60 E-value=0.0018 Score=48.73 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.7
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|.+|||||||++.|.+-
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34678999999999999999999854
No 354
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.60 E-value=0.0015 Score=54.98 Aligned_cols=34 Identities=26% Similarity=0.155 Sum_probs=28.6
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHcCCeeeeCCc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQ 108 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~lg~~vi~~D~ 108 (212)
.|.-+.|+|+||+||||++..|...|+.++.-|.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~G~~lv~DD~ 179 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINKNHLFVGDDA 179 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTTTCEEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcCCEEEeCCE
Confidence 4777999999999999999999988887765443
No 355
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.60 E-value=0.0013 Score=48.68 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.3
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+.|+|+|++|+|||||++.|.+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEEECCCCCCHHHHHHHHcC
Confidence 35689999999999999999964
No 356
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.59 E-value=0.0013 Score=51.16 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHH
Q psy17138 77 YIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..+.|.|++|+||||+++.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999974
No 357
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.59 E-value=0.0016 Score=48.79 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=22.7
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|.+|+|||||++.|.+-
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 44678999999999999999999864
No 358
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.59 E-value=0.002 Score=57.71 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=27.1
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHH------HcCCeeeeCCc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLE------TLGAGLINCDQ 108 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~------~lg~~vi~~D~ 108 (212)
..++.+|+|+|++||||||++..|+ +....++++|.
T Consensus 98 ~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 98 KGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp SS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 3568899999999999999999998 33345567764
No 359
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.58 E-value=0.0015 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHH
Q psy17138 77 YIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..|+|+|++|||||||++.|.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999999999974
No 360
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.58 E-value=0.0013 Score=49.16 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...|+|+|++|||||||++.|.+-
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999999853
No 361
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.58 E-value=0.0016 Score=48.88 Aligned_cols=26 Identities=15% Similarity=-0.040 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+++|.+|+|||||++.+.+-
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999999853
No 362
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.58 E-value=0.0016 Score=49.19 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.7
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|++|||||||++.|.+-
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 44678999999999999999999853
No 363
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.58 E-value=0.0016 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+...|+|+|.+|||||||++.|..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999974
No 364
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.58 E-value=0.0013 Score=49.19 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.....|+|+|++|||||||++.|.+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 4467899999999999999999975
No 365
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.57 E-value=0.0015 Score=49.84 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=23.7
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+...|+|+|.+|+|||||++.|.+-
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcC
Confidence 455788999999999999999999863
No 366
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.56 E-value=0.001 Score=56.73 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=22.9
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.++|.++.|.|++|||||||+..++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999999998873
No 367
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.56 E-value=0.0018 Score=49.61 Aligned_cols=26 Identities=15% Similarity=-0.015 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|++|||||||++.|.+-
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34678999999999999999999854
No 368
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.55 E-value=0.0012 Score=55.72 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..+..+.|.|++|+||||+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4466899999999999999999975
No 369
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.55 E-value=0.0016 Score=57.65 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.0
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..++.+|.++|.+||||||+++.|+.
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999999984
No 370
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.55 E-value=0.0013 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
...|+++|++|+|||||++.|.+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999974
No 371
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.54 E-value=0.0021 Score=49.08 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=22.6
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+...|+|+|.+|||||||++.+.+-
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999887753
No 372
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.54 E-value=0.0011 Score=57.48 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=23.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...+..++|+|.+|+|||||++.|.+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 455778999999999999999999864
No 373
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.54 E-value=0.0017 Score=55.20 Aligned_cols=30 Identities=30% Similarity=0.278 Sum_probs=24.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCeeee
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGLIN 105 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~ 105 (212)
+.-+.|.||+|+||||+++.|+. ++.+++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~ 81 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTM 81 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 44578899999999999999984 5666554
No 374
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.53 E-value=0.00074 Score=64.52 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=29.1
Q ss_pred ccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHH
Q psy17138 60 GTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIA 93 (212)
Q Consensus 60 g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~ 93 (212)
|.+..-+++++...++..++.|||.||||||+|+
T Consensus 8 gar~hNLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 8 GARVHNLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp SBCSTTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred CccccccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 3344556778889999999999999999999997
No 375
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.53 E-value=0.0018 Score=49.85 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.....|+|+|++|+|||||++.|.+-
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 44678999999999999999999864
No 376
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.52 E-value=0.0015 Score=50.04 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=22.4
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
......|+|+|.+|+|||||++.|.+
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhc
Confidence 44567799999999999999999974
No 377
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.52 E-value=0.0013 Score=50.82 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=21.6
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
......|+|+|.+|+|||||++.|.+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHh
Confidence 34568899999999999999999964
No 378
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.52 E-value=0.0013 Score=54.86 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=24.0
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
++..-+|+|+|.+|+|||||++.|.+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 555788999999999999999999864
No 379
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.52 E-value=0.0006 Score=64.59 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=28.7
Q ss_pred ccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHH
Q psy17138 60 GTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIA 93 (212)
Q Consensus 60 g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~ 93 (212)
|.+..-+++++...+++.+++|||.||||||||+
T Consensus 20 gar~hNLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 20 GARQHNLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp EECSTTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred eccccCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 3344556777888999999999999999999998
No 380
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.52 E-value=0.0012 Score=51.29 Aligned_cols=25 Identities=40% Similarity=0.357 Sum_probs=20.5
Q ss_pred EEEecCCCCcHHHHHHHHHHcCCee
Q psy17138 79 IGLTGGIASGKSTIAKYLETLGAGL 103 (212)
Q Consensus 79 igl~G~~GsGKSTl~~~L~~lg~~v 103 (212)
+-|+|++||||||++..|+..|.++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~~~~~ 26 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGDAPQV 26 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSE
T ss_pred EEEECCCCCcHHHHHHHHHhcCCCe
Confidence 6799999999999999998435443
No 381
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.52 E-value=0.0026 Score=48.46 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=23.4
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
......|+|+|.+|+|||||++.|.+-
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 445678999999999999999999864
No 382
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.51 E-value=0.0017 Score=49.26 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.3
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.....|+|+|++|+|||||++.|.+-
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999999864
No 383
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.0021 Score=48.98 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
....|+|+|.+|||||||++.|.+-
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 4678999999999999999999863
No 384
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.51 E-value=0.0016 Score=48.79 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|++|||||||++.|.+-
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 34578999999999999999999864
No 385
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.51 E-value=0.0019 Score=48.99 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
....|+|+|.+|+|||||++.+.+.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHT
T ss_pred cccEEEEECCCCCCHHHHHHHHHhh
Confidence 4578999999999999999999864
No 386
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.50 E-value=0.0016 Score=52.57 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=22.6
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+...|+|+|.+|+|||||++.|.+.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCC
Confidence 345678999999999999999999864
No 387
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.50 E-value=0.0019 Score=57.41 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=24.3
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLET-LGAGLI 104 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi 104 (212)
..++| +.|+||+|+||||+++.+++ ++.+++
T Consensus 47 ~~p~g--vLL~GppGtGKT~Laraia~~~~~~f~ 78 (476)
T 2ce7_A 47 RMPKG--ILLVGPPGTGKTLLARAVAGEANVPFF 78 (476)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 34445 77999999999999999984 566554
No 388
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.49 E-value=0.0013 Score=50.05 Aligned_cols=27 Identities=26% Similarity=0.124 Sum_probs=21.3
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
...+...|+|+|.+|||||||++.|.+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 345678899999999999999999974
No 389
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.49 E-value=0.002 Score=49.02 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=22.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.....|+|+|++|+|||||++.|.+-
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 44678999999999999999999864
No 390
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.49 E-value=0.0021 Score=48.13 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...|+++|.+|+|||||++.+.+-
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999864
No 391
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.49 E-value=0.0023 Score=52.01 Aligned_cols=30 Identities=23% Similarity=0.177 Sum_probs=24.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET-LGAGLI 104 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi 104 (212)
.+.-+.|.||+|+||||+++.++. ++.+++
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~ 93 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFI 93 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 356788999999999999999984 566544
No 392
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.0024 Score=56.04 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=25.0
Q ss_pred CCeEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLIN 105 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~ 105 (212)
.+.=+-|.||+|||||+++++++ .++.+++.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~ 236 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR 236 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence 34447789999999999999998 46777664
No 393
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.48 E-value=0.0018 Score=47.72 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEEecCCCCcHHHHHHHHHHc
Q psy17138 78 IIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~l 99 (212)
-+-|.|++|+|||++++.|...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999999864
No 394
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.48 E-value=0.0013 Score=51.07 Aligned_cols=31 Identities=16% Similarity=0.009 Sum_probs=24.8
Q ss_pred CCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 69 ~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..++......|+|+|.+|||||||++.|.+-
T Consensus 18 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 18 LYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp -CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3344455678999999999999999999863
No 395
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.48 E-value=0.0017 Score=54.89 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=19.7
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q psy17138 78 IIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+.|+||+|+||||+++.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999975
No 396
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.48 E-value=0.0017 Score=55.64 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE 97 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~ 97 (212)
+-+..|+|+|||||||++.+|.
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3688999999999999999997
No 397
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.0022 Score=49.08 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|.+|+|||||++.|.+-
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34678999999999999999999864
No 398
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.47 E-value=0.0019 Score=49.01 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+...|+|+|.+|||||||++.|.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3468899999999999999999985
No 399
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.46 E-value=0.0021 Score=48.65 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+...|+++|++|||||||++.|.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4578899999999999999999975
No 400
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.46 E-value=0.0021 Score=48.35 Aligned_cols=24 Identities=21% Similarity=0.108 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+...|+++|.+|+|||||++.|.+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 356799999999999999999985
No 401
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.0026 Score=55.95 Aligned_cols=31 Identities=35% Similarity=0.417 Sum_probs=24.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLE-TLGAGLIN 105 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~ 105 (212)
.+.=+-|.||+|||||+++++++ .+|++++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~ 245 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 34456788999999999999998 46777654
No 402
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.45 E-value=0.002 Score=47.45 Aligned_cols=21 Identities=38% Similarity=0.290 Sum_probs=19.3
Q ss_pred EEEEecCCCCcHHHHHHHHHH
Q psy17138 78 IIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~ 98 (212)
.|+++|.+|+|||||++.|.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 403
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.45 E-value=0.002 Score=54.74 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=24.4
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
-.++|.++.|.|++||||||++..++.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999999975
No 404
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.44 E-value=0.0018 Score=52.22 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=22.3
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...|+|+|.+|||||||++.|.+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999854
No 405
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0026 Score=55.84 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=25.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH-cCCeeee
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET-LGAGLIN 105 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi~ 105 (212)
+.+.=+-|.||+|||||++++++++ +|.+++.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 3455677899999999999999984 6777654
No 406
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.44 E-value=0.0014 Score=56.15 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHcC
Q psy17138 78 IIGLTGGIASGKSTIAKYLETLG 100 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~lg 100 (212)
+++|+|++|||||||++.|.+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 49999999999999999999653
No 407
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.43 E-value=0.002 Score=49.62 Aligned_cols=26 Identities=15% Similarity=0.039 Sum_probs=22.7
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|.+|+|||||++.|.+-
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 45678999999999999999999864
No 408
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.43 E-value=0.0022 Score=48.73 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=22.2
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|.+|||||||++.|.+-
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC
Confidence 34578999999999999999999853
No 409
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.42 E-value=0.002 Score=49.19 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=22.5
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.......|+|+|.+|+|||||++.|.+-
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3555778999999999999999999753
No 410
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.42 E-value=0.0023 Score=48.87 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..+...|+|+|.+|+|||||++.|.+-
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhC
Confidence 445688999999999999999999753
No 411
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.42 E-value=0.0033 Score=55.19 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=28.6
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHH----c-CC--eeeeCCc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLET----L-GA--GLINCDQ 108 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~----l-g~--~vi~~D~ 108 (212)
...++.+|.++|++||||||++..|+. . |. .++++|.
T Consensus 96 ~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 96 AAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp CSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 345688999999999999999988872 2 43 4567774
No 412
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.42 E-value=0.0015 Score=54.49 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+..+.|.||+|+||||+++.+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 44578999999999999999974
No 413
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.42 E-value=0.0015 Score=49.33 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=20.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHHc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..|+|+|.+|+|||||++.|.+-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 45899999999999999999864
No 414
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=96.41 E-value=0.0016 Score=55.25 Aligned_cols=26 Identities=27% Similarity=0.189 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.++.+|.|-|+.||||||+++.|+..
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~ 30 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASA 30 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999853
No 415
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.40 E-value=0.0018 Score=49.47 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=22.7
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|++|||||||++.|.+-
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 34678999999999999999999864
No 416
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.40 E-value=0.0025 Score=48.87 Aligned_cols=26 Identities=31% Similarity=0.201 Sum_probs=22.7
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..+...|+|+|++|+|||||++.|.+
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 34578899999999999999999964
No 417
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.38 E-value=0.0018 Score=52.75 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...|+|+|.+|||||||++.|.+.
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC
Confidence 4577999999999999999999864
No 418
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.37 E-value=0.0016 Score=56.06 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.6
Q ss_pred eEEEEecCCCCcHHHHHHHHHHc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..++|+|.+|||||||++.|.+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 419
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.37 E-value=0.0026 Score=49.05 Aligned_cols=26 Identities=23% Similarity=0.073 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.....|+|+|++|+|||||++.|.+-
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 44678999999999999999999854
No 420
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.37 E-value=0.0017 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.9
Q ss_pred eEEEEecCCCCcHHHHHHHHHHc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~l 99 (212)
..|+|+|.+|||||||++.|.+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999875
No 421
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.36 E-value=0.0024 Score=49.06 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
....|+|+|++|+|||||++.|.+-
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999853
No 422
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.35 E-value=0.00059 Score=61.09 Aligned_cols=31 Identities=26% Similarity=0.159 Sum_probs=25.1
Q ss_pred CCCCCCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 68 PKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 68 ~~~~~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+.+....| +.+|+|+|||||||++.+|..+
T Consensus 53 ~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 53 QLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 344455556 8999999999999999999754
No 423
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.34 E-value=0.0023 Score=49.72 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=22.5
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.....|+|+|.+|+|||||++.|.+-
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC
Confidence 34578999999999999999999753
No 424
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.34 E-value=0.0023 Score=49.43 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=18.6
Q ss_pred CeEEEEecCCCCcHHHHH-HHHH
Q psy17138 76 PYIIGLTGGIASGKSTIA-KYLE 97 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~-~~L~ 97 (212)
+.++.++|+.||||||++ +.+.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999998 4443
No 425
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.34 E-value=0.0024 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.073 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...|+|+|.+|+|||||++.|.+-
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999863
No 426
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.33 E-value=0.0026 Score=54.26 Aligned_cols=29 Identities=31% Similarity=0.288 Sum_probs=23.3
Q ss_pred eEEEEecCCCCcHHHHHHHHHH-cCCeeee
Q psy17138 77 YIIGLTGGIASGKSTIAKYLET-LGAGLIN 105 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~ 105 (212)
.-+.|.||+|+||||+++.|+. ++.+++.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3478999999999999999984 5655543
No 427
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.33 E-value=0.0023 Score=49.22 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.7
Q ss_pred EEEecCCCCcHHHHHHHHHH
Q psy17138 79 IGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 79 igl~G~~GsGKSTl~~~L~~ 98 (212)
+.|.|++|+||||+++.+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999974
No 428
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.31 E-value=0.00089 Score=64.26 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=29.6
Q ss_pred ccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHH
Q psy17138 60 GTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIA 93 (212)
Q Consensus 60 g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~ 93 (212)
|.+..-+++++...++..++.|||.||||||||+
T Consensus 30 gar~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 30 GAREHNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp EECSSSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred cccccccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 4455667788889999999999999999999987
No 429
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.31 E-value=0.0036 Score=52.36 Aligned_cols=29 Identities=31% Similarity=0.261 Sum_probs=23.7
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-LGAGLI 104 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-lg~~vi 104 (212)
+.-+.|.||+|+|||++++.++. ++.+++
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~ 80 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFF 80 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEE
Confidence 45688999999999999999984 566554
No 430
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.30 E-value=0.0027 Score=48.41 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.....|+|+|.+|+|||||++.|.+-
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcC
Confidence 34678999999999999999999853
No 431
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.30 E-value=0.0026 Score=56.02 Aligned_cols=29 Identities=31% Similarity=0.373 Sum_probs=24.0
Q ss_pred EEEEecCCCCcHHHHHHHHHH-cCCeeeeC
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-LGAGLINC 106 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-lg~~vi~~ 106 (212)
-+.|.||+||||||+++.|+. ++.+++..
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~~~~~v 81 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCCceee
Confidence 378999999999999999985 67766543
No 432
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.30 E-value=0.0023 Score=56.22 Aligned_cols=35 Identities=34% Similarity=0.333 Sum_probs=27.7
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc------CCeeeeCCc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL------GAGLINCDQ 108 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l------g~~vi~~D~ 108 (212)
.++.+|+++|++||||||++..|+.. -..++++|.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 44679999999999999999999852 245567774
No 433
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.30 E-value=0.0009 Score=64.04 Aligned_cols=34 Identities=29% Similarity=0.297 Sum_probs=29.4
Q ss_pred ccccCCCCCCCCCCCCCeEEEEecCCCCcHHHHH
Q psy17138 60 GTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIA 93 (212)
Q Consensus 60 g~~l~~~~~~~~~~~~~~iigl~G~~GsGKSTl~ 93 (212)
|.+..-+++++...++..++.|+|.||||||||+
T Consensus 28 gar~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 28 GARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp EECSSSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred ccccccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 4455667778889999999999999999999987
No 434
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.30 E-value=0.0025 Score=48.62 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=22.9
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|.+|+|||||++.|.+-
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 44678999999999999999999864
No 435
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.30 E-value=0.0021 Score=49.39 Aligned_cols=27 Identities=33% Similarity=0.175 Sum_probs=21.2
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
...+...|.|+|.+|+|||||++.+.+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHh
Confidence 345567899999999999999998875
No 436
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.29 E-value=0.0035 Score=48.31 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=23.4
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.......|+|+|.+|||||||++.|.+-
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhC
Confidence 3445678999999999999999999863
No 437
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.29 E-value=0.0021 Score=48.70 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=22.2
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...|+|+|++|+|||||++.|.+-
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999999864
No 438
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.29 E-value=0.0025 Score=52.26 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.9
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...|+|+|.+|||||||++.|.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999875
No 439
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.28 E-value=0.0028 Score=47.56 Aligned_cols=24 Identities=21% Similarity=0.193 Sum_probs=21.4
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+...|+|+|.+|+|||||++.|.+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 356899999999999999999985
No 440
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0031 Score=54.83 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=23.7
Q ss_pred eEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138 77 YIIGLTGGIASGKSTIAKYLE-TLGAGLIN 105 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~-~lg~~vi~ 105 (212)
.=+-|.||+|||||+++++++ .++.+++.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 346789999999999999998 46777654
No 441
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.26 E-value=0.0027 Score=48.94 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.....|+|+|++|+|||||++.|.+-
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999863
No 442
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.26 E-value=0.0013 Score=51.41 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.....|+|+|.+|||||||++.|.+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34668999999999999999999754
No 443
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.25 E-value=0.0032 Score=48.28 Aligned_cols=26 Identities=23% Similarity=0.126 Sum_probs=21.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..+...|+|+|.+|+|||||++.|.+
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 45578899999999999999999974
No 444
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.25 E-value=0.0041 Score=52.86 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=24.5
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET-LGAGLI 104 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~-lg~~vi 104 (212)
.+.-+.|.||+|+||||+++.++. ++.+++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 355688999999999999999984 566554
No 445
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.25 E-value=0.0029 Score=49.29 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.....|+|+|++|+|||||++.|.+-
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 44678999999999999999999864
No 446
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.25 E-value=0.0026 Score=54.14 Aligned_cols=26 Identities=31% Similarity=0.201 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.....++++|++|+|||||++.|.+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45779999999999999999999864
No 447
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.24 E-value=0.0013 Score=53.16 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=21.1
Q ss_pred EEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138 79 IGLTGGIASGKSTIAKYLET-LGAGLI 104 (212)
Q Consensus 79 igl~G~~GsGKSTl~~~L~~-lg~~vi 104 (212)
+.|.||+|+||||+++.|+. ++.+++
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~ 73 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFF 73 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 67899999999999999984 454443
No 448
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.24 E-value=0.0027 Score=58.64 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...++..++|+|++|||||||++.|.+.
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence 3567899999999999999999999853
No 449
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.23 E-value=0.003 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+.-+.|.||+|+||||+++.++.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 55688999999999999998874
No 450
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.23 E-value=0.0035 Score=48.15 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+.|+|+|.+|+|||||++.+.+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 47799999999999999999985
No 451
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.20 E-value=0.0033 Score=53.92 Aligned_cols=26 Identities=38% Similarity=0.267 Sum_probs=22.4
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..+...+.|+|.+||||||++|.+.-
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQMRI 55 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHHHH
Confidence 35578899999999999999999963
No 452
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.19 E-value=0.003 Score=48.82 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=23.2
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
......|+|+|.+|+|||||++.|.+-
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhC
Confidence 344678999999999999999999854
No 453
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.16 E-value=0.0028 Score=48.89 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+...|+|+|.+|||||||++.|.+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 4467899999999999999999974
No 454
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.16 E-value=0.0037 Score=53.17 Aligned_cols=29 Identities=31% Similarity=0.271 Sum_probs=23.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHH-cCCeeee
Q psy17138 77 YIIGLTGGIASGKSTIAKYLET-LGAGLIN 105 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi~ 105 (212)
.-+.|.||+|+||||+++.++. ++.+++.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~ 114 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFS 114 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 3467889999999999999984 5666543
No 455
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.15 E-value=0.0029 Score=53.30 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..+..+.|.||+|+||||+++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999974
No 456
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.13 E-value=0.0039 Score=52.32 Aligned_cols=29 Identities=31% Similarity=0.201 Sum_probs=23.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH-c-CCeee
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET-L-GAGLI 104 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~-l-g~~vi 104 (212)
+.-+.|.||+|+|||++++.++. + +.+++
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 45678899999999999999984 5 55543
No 457
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.12 E-value=0.0056 Score=50.61 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=27.2
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH----cCC--eeeeCCc
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET----LGA--GLINCDQ 108 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~----lg~--~vi~~D~ 108 (212)
..++.+|+++|..|+||||++-.|+. .|. -++|+|.
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45688999999999999999887763 454 4568884
No 458
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0044 Score=54.81 Aligned_cols=32 Identities=28% Similarity=0.242 Sum_probs=25.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLE-TLGAGLIN 105 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~ 105 (212)
..+.=+-|.||+|||||+++++++ .++.+++.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence 344557789999999999999998 46777654
No 459
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.11 E-value=0.0037 Score=48.79 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.1
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+...|+|+|.+|+|||||++.|.+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 3467899999999999999999974
No 460
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.11 E-value=0.0027 Score=53.36 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.8
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
-.++|.++.|.|++||||||++..++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 356789999999999999999999974
No 461
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.10 E-value=0.0028 Score=48.07 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+...|+++|.+|+|||||++.|..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 3467899999999999999999963
No 462
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.10 E-value=0.0041 Score=48.15 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+...|+++|.+|+|||||++.+..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 4568899999999999999999985
No 463
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.09 E-value=0.0036 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+..++|+|.+|+|||||++.|.+-
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 467999999999999999999874
No 464
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.09 E-value=0.0056 Score=57.79 Aligned_cols=28 Identities=18% Similarity=0.076 Sum_probs=23.9
Q ss_pred CCCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 71 HLSPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 71 ~~~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+....+..+.|.||+||||||+++.|++
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 3445677789999999999999999985
No 465
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.08 E-value=0.0051 Score=54.98 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=25.3
Q ss_pred CeEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLIN 105 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~ 105 (212)
+..+.|.||+|+||||+++.++ .+|+.++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 4578899999999999999998 46777654
No 466
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.08 E-value=0.0039 Score=54.85 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=24.2
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
-..+|.++.|.|++|+|||||+..++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 466799999999999999999999874
No 467
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.07 E-value=0.0034 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.4
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...|+|+|.+|+|||||++.|.+.
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999864
No 468
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.06 E-value=0.0035 Score=51.32 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=24.0
Q ss_pred eEEEEecCCCCcHHHHHHHHHH-cCCeee--eCCc
Q psy17138 77 YIIGLTGGIASGKSTIAKYLET-LGAGLI--NCDQ 108 (212)
Q Consensus 77 ~iigl~G~~GsGKSTl~~~L~~-lg~~vi--~~D~ 108 (212)
.-+.|.||+|+||||+++.++. ++.+++ ++..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~ 85 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchh
Confidence 3467899999999999999984 455443 4443
No 469
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.06 E-value=0.0034 Score=55.07 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.5
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+.-+.|.||+|+||||+++.+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999985
No 470
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=96.06 E-value=0.0025 Score=54.03 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=22.2
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
++.+|.|-|+.||||||+++.|+.
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~ 26 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVA 26 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999985
No 471
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.05 E-value=0.0022 Score=48.23 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=11.8
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.....|+|+|.+|+|||||++.|.+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp SEEEEEEEECCCCC-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999974
No 472
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.05 E-value=0.0047 Score=49.39 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=20.2
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLE 97 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~ 97 (212)
.+|.++.++|++||||||++-.+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRL 33 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHH
Confidence 458899999999999999877665
No 473
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.05 E-value=0.005 Score=51.41 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=22.1
Q ss_pred EEEEecCCCCcHHHHHHHHHH-cCCeee
Q psy17138 78 IIGLTGGIASGKSTIAKYLET-LGAGLI 104 (212)
Q Consensus 78 iigl~G~~GsGKSTl~~~L~~-lg~~vi 104 (212)
.+.|+|++|+||||+++.++. ++.+++
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~~~~ 84 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSANIK 84 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 378999999999999999984 555443
No 474
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.05 E-value=0.0035 Score=53.88 Aligned_cols=24 Identities=25% Similarity=0.058 Sum_probs=20.6
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
...-+.|+|++||||||+++.|..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH
Confidence 345578999999999999999974
No 475
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=96.03 E-value=0.003 Score=54.43 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.++.+|.|-|+.||||||+++.|+.
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae 71 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVA 71 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 476
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.03 E-value=0.0042 Score=48.23 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+...|+|+|.+|+|||||++.|.+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcC
Confidence 44578999999999999999999853
No 477
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.03 E-value=0.0037 Score=52.25 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=18.8
Q ss_pred EEEecCCCCcHHHHHHHHHH
Q psy17138 79 IGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 79 igl~G~~GsGKSTl~~~L~~ 98 (212)
+.|.||+|+||||+++.+++
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999985
No 478
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.02 E-value=0.0036 Score=49.82 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=19.8
Q ss_pred CCeEEEEecCCCCcHHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLE 97 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~ 97 (212)
.+..+.+.|++||||||++..+.
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHH
Confidence 47789999999999999877664
No 479
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.02 E-value=0.0037 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.2
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+.|+|+|.+|+|||||++.|.+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhC
Confidence 36799999999999999999754
No 480
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.0061 Score=53.43 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=25.4
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLE-TLGAGLIN 105 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~ 105 (212)
+.+.=+-|.||+|+|||+++++++ .++.+++.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~ 246 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLR 246 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence 334557889999999999999998 46776654
No 481
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.98 E-value=0.0029 Score=54.05 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.7
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.+.|+|+|++|+|||||++.|.+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTC
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCC
Confidence 355799999999999999998654
No 482
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.98 E-value=0.0048 Score=46.97 Aligned_cols=25 Identities=16% Similarity=0.030 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...|+++|.+|+|||||++.|.+-
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999853
No 483
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.95 E-value=0.0069 Score=51.96 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=24.8
Q ss_pred CeEEEEecCCCCcHHHHHHHHH-HcCCeeee
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLE-TLGAGLIN 105 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~-~lg~~vi~ 105 (212)
+.-+.|.||+|+|||++++.++ .++.+++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence 4568899999999999999998 46766653
No 484
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.95 E-value=0.0045 Score=49.05 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=20.6
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...+.+.||+|+||||++..|+..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 445899999999999999999853
No 485
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.93 E-value=0.0043 Score=51.86 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=23.3
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.++|.++.|.|++||||||++..++.
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999999873
No 486
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.92 E-value=0.0068 Score=46.83 Aligned_cols=25 Identities=16% Similarity=-0.036 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...|+|+|.+|+|||||++.|.+-
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999853
No 487
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.90 E-value=0.0046 Score=52.17 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.8
Q ss_pred CeEEEEecCCCCcHHHHHHHHHH
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
+..+.|.||+|+||||+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999984
No 488
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.89 E-value=0.0046 Score=48.95 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=21.9
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLE 97 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~ 97 (212)
.++|.++.|.|++|+||||++-.++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 4568999999999999999998764
No 489
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.89 E-value=0.0062 Score=47.58 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=21.9
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.....|.|+|.+|+|||||++.|.+-
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 44678999999999999999999863
No 490
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.89 E-value=0.0045 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=21.5
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...|+|+|.+|||||||++.|.+.
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCC
Confidence 457999999999999999999865
No 491
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.88 E-value=0.0046 Score=50.14 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=22.5
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
+...|+|+|.+|+|||||++.|.+-
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999864
No 492
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.87 E-value=0.0053 Score=51.91 Aligned_cols=24 Identities=21% Similarity=0.312 Sum_probs=21.2
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.+..+.|.||+|+||||+++.+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 355899999999999999999974
No 493
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.0057 Score=47.95 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
.....|+|+|.+|+|||||++.|.+.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence 34578999999999999999999864
No 494
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.84 E-value=0.0052 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=19.2
Q ss_pred CCeEEEEecCCCCcHHHHHHHH
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYL 96 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L 96 (212)
.+.++.++|++|||||+++..+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHH
Confidence 3678899999999999998775
No 495
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.80 E-value=0.005 Score=50.37 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.7
Q ss_pred CeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 76 PYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 76 ~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
...|+|+|.+|+|||||++.|.+.
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCC
Confidence 457999999999999999999865
No 496
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.79 E-value=0.0061 Score=50.97 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=23.4
Q ss_pred CCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 73 SPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 73 ~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
..+|.++.|.|++|+||||++..++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 56799999999999999999999873
No 497
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.79 E-value=0.0067 Score=47.74 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 74 PYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 74 ~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
...+.|+|+|.+|+|||||++.+.+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999984
No 498
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.77 E-value=0.0058 Score=49.73 Aligned_cols=25 Identities=20% Similarity=0.106 Sum_probs=22.1
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHHc
Q psy17138 75 YPYIIGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 75 ~~~iigl~G~~GsGKSTl~~~L~~l 99 (212)
....|+++|.+|+|||||++.|.+-
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999853
No 499
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.76 E-value=0.0027 Score=46.72 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.0
Q ss_pred EEEecCCCCcHHHHHHHHHHc
Q psy17138 79 IGLTGGIASGKSTIAKYLETL 99 (212)
Q Consensus 79 igl~G~~GsGKSTl~~~L~~l 99 (212)
+-|.|++|+|||++++.+...
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 778999999999999999754
No 500
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.70 E-value=0.0012 Score=50.87 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=22.9
Q ss_pred CCCCCeEEEEecCCCCcHHHHHHHHHH
Q psy17138 72 LSPYPYIIGLTGGIASGKSTIAKYLET 98 (212)
Q Consensus 72 ~~~~~~iigl~G~~GsGKSTl~~~L~~ 98 (212)
.......|+|+|.+|||||||++.|.+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhc
Confidence 345568899999999999999998864
Done!