RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17138
(212 letters)
>gnl|CDD|238980 cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis.
Length = 179
Score = 154 bits (392), Expect = 7e-48
Identities = 55/135 (40%), Positives = 80/135 (59%), Gaps = 1/135 (0%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
IIGLTGGI SGKST+AK L+ LG +I+ D++ H Y+ G Q + E FG DI L DG
Sbjct: 1 IIGLTGGIGSGKSTVAKLLKELGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDG 60
Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQ 197
+DRKKLG IVF++ ++ KL PLI +++E++A KV+V++ +L +
Sbjct: 61 ELDRKKLGEIVFADPEKRKKLEAITHPLIRKEIEEQLAEA-RKEKVVVLDIPLLFETGLE 119
Query: 198 DQVHEIWVTFIPEQE 212
V + V P +
Sbjct: 120 KLVDRVIVVDAPPEI 134
>gnl|CDD|234620 PRK00081, coaE, dephospho-CoA kinase; Reviewed.
Length = 194
Score = 147 bits (374), Expect = 6e-45
Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP 135
IIGLTGGI SGKST+A LGA +I+ D + H + G Q + E FG +I
Sbjct: 2 MLIIGLTGGIGSGKSTVANLFAELGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDA 61
Query: 136 DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAK 195
DG +DR KL +VFS+ + KL + PLI ++ E++ ES +V++ +L
Sbjct: 62 DGELDRAKLRELVFSDPEARKKLEAILHPLIREEILEQLQEA-ESSPYVVLDIPLLFENG 120
Query: 196 WQDQVHEIWVTFIPEQ 211
+ V + V P +
Sbjct: 121 LEKLVDRVLVVDAPPE 136
>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 115 bits (289), Expect = 4e-32
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP 135
IIGLTGGI SGKST+AK L LG +I+ D + + G Q + E FG +I
Sbjct: 2 MLIIGLTGGIGSGKSTVAKILAELGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDE 61
Query: 136 DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAK 195
DG +DR+KL VF++ + KL + + PLI A++K I +V+E +L A
Sbjct: 62 DGGLDRRKLREKVFNDPEARLKLEKILHPLIRAEIKVVIDGARS--PYVVLEIPLLFEAG 119
Query: 196 WQDQVHEIWVTFIPEQ 211
+ ++ V + P +
Sbjct: 120 GEKYFDKVIVVYAPPE 135
>gnl|CDD|216308 pfam01121, CoaE, Dephospho-CoA kinase. This family catalyzes the
phosphorylation of the 3'-hydroxyl group of
dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This
enzyme uses ATP in its reaction.
Length = 179
Score = 109 bits (275), Expect = 2e-30
Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query: 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
I+GLTGGI SGKST+A LG +++ D + + + G+ + + FG DI L D
Sbjct: 1 LIVGLTGGIGSGKSTVANLFADLGVPIVDADVIARQVVEPGSPALAAIVDHFGPDILLAD 60
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKW 196
G +DR+ L +VFS+ +E LN + PLI ++ +++A+L + ++++ +L +
Sbjct: 61 GQLDRRALRELVFSDPEEKQWLNAILHPLIRREMFKQLAQL--TSPYVLLDVPLLFESGL 118
Query: 197 QDQVHEIWVTFIPEQE 212
H + V P +
Sbjct: 119 TKLCHRVLVVDAPVEL 134
>gnl|CDD|184807 PRK14730, coaE, dephospho-CoA kinase; Provisional.
Length = 195
Score = 107 bits (270), Expect = 2e-29
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 78 IIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
IGLTGGIASGKST+ YL G +++ D A G+ + + + +G I PD
Sbjct: 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPD 62
Query: 137 G-SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAK 195
G ++RK LG I+F++ +E L I P + + +EE+A+L S+ ++V+ +L AK
Sbjct: 63 GSELNRKALGEIIFNDPEERRWLENLIHPYVRERFEEELAQLK-SNPIVVLVIPLLFEAK 121
Query: 196 WQDQVHEIWV 205
D EIWV
Sbjct: 122 LTDLCSEIWV 131
>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces
scores in the range of 0-25 bits against adenylate,
guanylate, uridine, and thymidylate kinases
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 188
Score = 105 bits (263), Expect = 2e-28
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGA-GLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
IIGLTGGI SGKST+A YL +I+ D++ H+ + G+ + + + FG I D
Sbjct: 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNED 60
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKW 196
G +DRK LG VF++ +E+ LN + PLI +K+ +A+ ++++ +L K
Sbjct: 61 GELDRKALGERVFNDPEELKWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKL 120
Query: 197 QDQVHEIWV 205
+ + V
Sbjct: 121 RSLCDRVIV 129
>gnl|CDD|215232 PLN02422, PLN02422, dephospho-CoA kinase.
Length = 232
Score = 95.2 bits (237), Expect = 3e-24
Identities = 54/139 (38%), Positives = 81/139 (58%), Gaps = 6/139 (4%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
++GLTGGIASGKST++ ++ G +++ D++ G+ G + V FGEDI LPDG
Sbjct: 3 VVGLTGGIASGKSTVSNLFKSSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDG 62
Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSES-HKVIVIEAAVLLSAK- 195
+DR+KLG IVFS+ + LN+ + P I + + EI +L KVIV++ +L K
Sbjct: 63 EVDREKLGQIVFSDPSKRQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKM 122
Query: 196 --WQDQVHEIWVTFIPEQE 212
W V +WV PE +
Sbjct: 123 DKWTKPVVVVWVD--PETQ 139
>gnl|CDD|179560 PRK03333, coaE, dephospho-CoA kinase/protein folding accessory
domain-containing protein; Provisional.
Length = 395
Score = 91.2 bits (227), Expect = 1e-21
Identities = 41/97 (42%), Positives = 57/97 (58%)
Query: 79 IGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGS 138
IGLTGGI +GKST+A L LGA +++ D L + GT G + FG+DI L DG+
Sbjct: 4 IGLTGGIGAGKSTVAARLAELGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGA 63
Query: 139 IDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIA 175
+DR L A F++ + LN + PL+ A+ E IA
Sbjct: 64 LDRPALAAKAFADDEARAVLNGIVHPLVGARRAELIA 100
>gnl|CDD|173193 PRK14731, coaE, dephospho-CoA kinase; Provisional.
Length = 208
Score = 77.0 bits (190), Expect = 1e-17
Identities = 40/131 (30%), Positives = 76/131 (58%), Gaps = 11/131 (8%)
Query: 72 LSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVV---RELF 128
+ P+++G+TGGI SGKST+ ++L +G L D++ A ++ +V+ ++LF
Sbjct: 1 MRSLPFLVGVTGGIGSGKSTVCRFLAEMGCELFEADRV---AKELQVTDPEVIEGIKKLF 57
Query: 129 GEDIALPDGS----IDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARL-SESHKV 183
G+D+ D S +DRK++ +VFS+ +++ LN+ I P + A + + R ++
Sbjct: 58 GKDVYSKDASGKLLLDRKRIAQVVFSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRI 117
Query: 184 IVIEAAVLLSA 194
+V EAA+L +
Sbjct: 118 LVKEAAILFES 128
>gnl|CDD|237808 PRK14734, coaE, dephospho-CoA kinase; Provisional.
Length = 200
Score = 70.6 bits (173), Expect = 4e-15
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 79 IGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVREL---FGEDIALP 135
IGLTGGI SGKST+A L + G +++ DQ+ A D+ G + EL FG+DI P
Sbjct: 4 IGLTGGIGSGKSTVADLLSSEGFLIVDADQV---ARDIVEPGQPALAELAEAFGDDILNP 60
Query: 136 DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSES-HKVIVIEAAVLLSA 194
DG++DR L A F++ ++ LN P I + KV V + +L+
Sbjct: 61 DGTLDRAGLAAKAFASPEQTALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEK 120
Query: 195 KWQDQVHEIWVTFIPEQE 212
++ + V + +E
Sbjct: 121 GLDRKMDLVVVVDVDVEE 138
>gnl|CDD|237807 PRK14732, coaE, dephospho-CoA kinase; Provisional.
Length = 196
Score = 67.3 bits (164), Expect = 6e-14
Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
+IG+TG I GKST K LE LGA I+ D+L R + + + L G I +G
Sbjct: 1 LIGITGMIGGGKSTALKILEELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENG 60
Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLL 192
+RKK+ IVF++++++ LN+ I PL+ ++I + + K+++ E +L
Sbjct: 61 KPNRKKISEIVFNDEEKLKALNELIHPLVRKDF-QKILQTTAEGKLVIWEVPLLF 114
>gnl|CDD|173915 cd02164, PPAT_CoAS, phosphopantetheine adenylyltransferase domain
of eukaryotic and archaeal bifunctional enzymes. The
PPAT domain of the bifunctional enzyme with PPAT and
DPCK functions. The final two steps of the CoA
biosynthesis pathway are catalyzed by phosphopantetheine
adenylyltransferase (PPAT) and dephospho-CoA (dPCoA)
kinase (DPCK). The PPAT reaction involves the reversible
adenylation of 4'-phosphopantetheine to form 3'-dPCoA
and PPi, and DPCK catalyses phosphorylation of the
3'-hydroxy group of the ribose moiety of dPCoA. In
eukaryotes the two enzymes are part of a large
multienzyme complex . Studies in Corynebacterium
ammoniagenes suggested that separate enzymes were
present, and this was confirmed through identification
of the bacterial PPAT/CoAD.
Length = 143
Score = 54.2 bits (131), Expect = 1e-09
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLR 55
++VS ET G +K+N R N L PL++V VPL+ +D + +K+SS+ +R
Sbjct: 93 IVVSPETYPGALKINRKREENGLSPLEIVVVPLVKADE-----DGEKISSTRIR 141
>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase;
Provisional.
Length = 153
Score = 49.1 bits (118), Expect = 1e-07
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 11/68 (16%)
Query: 2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPS-DGKVDEQEEDKLSSSNLRMREL- 59
++VS ET G +K+NE+R LKPL++V + + + DGK +SS+ +R E+
Sbjct: 92 IVVSPETYPGALKINEIRRERGLKPLEIVVIDFVLAEDGK-------PISSTRIRRGEID 144
Query: 60 --GTLRKP 65
G L K
Sbjct: 145 EHGNLIKE 152
>gnl|CDD|173195 PRK14733, coaE, dephospho-CoA kinase; Provisional.
Length = 204
Score = 46.6 bits (110), Expect = 2e-06
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 12/114 (10%)
Query: 77 YIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQLGHRAYDVGTRGNQVVR---ELFGEDI 132
Y IG+TGGIASGKST + L E L ++ D + T+ V++ E FG++I
Sbjct: 7 YPIGITGGIASGKSTATRILKEKLNLNVVCADTISREI----TKKPSVIKKIAEKFGDEI 62
Query: 133 ALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVI 186
+ + I+R L AI+ +K+ L + P+I ++K+++ ES V+ I
Sbjct: 63 VM-NKQINRAMLRAIITESKEAKKWLEDYLHPVINKEIKKQV---KESDTVMTI 112
>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General
function prediction only].
Length = 158
Score = 45.4 bits (108), Expect = 3e-06
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLR---MRE 58
++VS ET G +K+NE+R L PL+++ + V ++ +SS+ +R + E
Sbjct: 96 IVVSPETYPGALKINEIREKRGLPPLEIIVIDY------VLAEDGKPISSTRIRRGEIDE 149
Query: 59 LGTLRKPVQ 67
G + KP
Sbjct: 150 EGKIIKPRN 158
>gnl|CDD|185630 PTZ00451, PTZ00451, dephospho-CoA kinase; Provisional.
Length = 244
Score = 41.8 bits (98), Expect = 9e-05
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 37/142 (26%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP-- 135
+IGLTGGIA GKST+++ L ++ D + VVREL ++A
Sbjct: 3 LIGLTGGIACGKSTVSRILR---------EEHHIEVID----ADLVVRELQAPNMACTRK 49
Query: 136 ------------DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARL------ 177
G ++R +LG I+FS+ L + + P I + + IA
Sbjct: 50 IAARWPLCVHPETGELNRAELGKIIFSDAQARRALGRIMNPPIFRAILKRIAAAWWEDLW 109
Query: 178 ----SESHKVIVIEAAVLLSAK 195
S ++V++A L K
Sbjct: 110 RSGAGSSPLIVVLDAPTLFETK 131
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 38.4 bits (89), Expect = 4e-04
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 78 IIGLTGGIASGKSTIAKYL-ETLGAGLINCDQL 109
II +TG SGKST+AK L E LG +I+ D L
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLGIPVISLDDL 33
>gnl|CDD|235466 PRK05439, PRK05439, pantothenate kinase; Provisional.
Length = 311
Score = 39.4 bits (93), Expect = 6e-04
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETL 99
P+IIG+ G +A GKST A+ L+ L
Sbjct: 86 PFIIGIAGSVAVGKSTTARLLQAL 109
>gnl|CDD|169400 PRK08356, PRK08356, hypothetical protein; Provisional.
Length = 195
Score = 38.2 bits (89), Expect = 0.001
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 22/87 (25%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINC-----DQLGHRAYDVG-----------TRGN 121
I+G+ G IA+GK+T+AK+ E G ++C D L H D TR N
Sbjct: 7 IVGVVGKIAAGKTTVAKFFEEKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTREN 66
Query: 122 -----QVVRELFGEDIALPDGSIDRKK 143
+ ++E +GEDI L ++D+K+
Sbjct: 67 LIELGRYLKEKYGEDI-LIRLAVDKKR 92
>gnl|CDD|215218 PLN02388, PLN02388, phosphopantetheine adenylyltransferase.
Length = 177
Score = 37.6 bits (87), Expect = 0.002
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGT 61
++VS ET GG+ VN+ R L L + V ++P +E +KLSS+ LR E
Sbjct: 113 IVVSKETLPGGLSVNKKRAERGLSQLKIEVVDIVP-----EESTGNKLSSTTLRRLEAEK 167
Query: 62 LRKPVQP 68
K QP
Sbjct: 168 AVKQKQP 174
>gnl|CDD|234912 PRK01170, PRK01170, phosphopantetheine adenylyltransferase/unknown
domain fusion protein; Provisional.
Length = 322
Score = 37.5 bits (87), Expect = 0.003
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRE 58
++VS ET +K+NE+R+ N L PL +V VP + + ED S+ R+
Sbjct: 89 IVVSPETYQRALKINEIRIKNGLPPLKIVRVPYVLA--------EDLFPISSTRIIN 137
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 33.8 bits (78), Expect = 0.007
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINC 106
II +TGG SGKST+AK L G
Sbjct: 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVV 29
>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 35.5 bits (83), Expect = 0.011
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 76 PYIIGLTGGIASGKSTIAKYL-ETLG 100
P IIG+ GG SGK+T+A + E LG
Sbjct: 6 PIIIGIAGGSGSGKTTVASTIYEELG 31
>gnl|CDD|200027 TIGR00554, panK_bact, pantothenate kinase, bacterial type. Shown
to be a homodimer in E. coli. This enzyme catalyzes the
rate-limiting step in the biosynthesis of coenzyme A.
It is very well conserved from E. coli to B. subtilis,
but differs considerably from known eukaryotic forms,
described in a separate model [Biosynthesis of
cofactors, prosthetic groups, and carriers,
Pantothenate and coenzyme A].
Length = 290
Score = 33.7 bits (77), Expect = 0.044
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETL 99
PYII + G +A GKST A+ L+ L
Sbjct: 62 PYIISIAGSVAVGKSTTARILQAL 85
>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism].
Length = 283
Score = 33.8 bits (78), Expect = 0.046
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETL 99
P+IIG+ G +A GKST A+ L+ L
Sbjct: 82 PFIIGIAGSVAVGKSTTARILQAL 105
>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
also known as uridine kinase or uridine-cytidine kinase
(UCK), catalyzes the reversible phosphoryl transfer
from ATP to uridine or cytidine to yield UMP or CMP. In
the primidine nucleotide-salvage pathway, this enzyme
combined with nucleoside diphosphate kinases further
phosphorylates UMP and CMP to form UTP and CTP. This
kinase also catalyzes the phosphorylation of several
cytotoxic ribonucleoside analogs such as
5-flurrouridine and cyclopentenyl-cytidine.
Length = 198
Score = 32.5 bits (75), Expect = 0.080
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 78 IIGLTGGIASGKSTIAKYL 96
IIG+ GG SGK+T+A+ +
Sbjct: 1 IIGIAGGSGSGKTTVAEEI 19
>gnl|CDD|223839 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 33.2 bits (76), Expect = 0.090
Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 27/146 (18%)
Query: 14 KVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGTLRKPVQPKPHLS 73
+++ + LK + PL + ++ +++ L++ + + P+
Sbjct: 113 DLDKRALLKELKSKSRLFTPL-ARKTNLTPEQAARIAELLLKLPGVDVETDSRRYYPYGE 171
Query: 74 PYPYIIGLTGGI-----------ASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQ 122
++ G G I GKS + K + + G + G+R +V RGN
Sbjct: 172 LASHVAGYVGKINEDELGRLKNEDIGKSGLEKSYDDVLRG-----KDGYREVEVDRRGN- 225
Query: 123 VVRELF------GEDIALPDGSIDRK 142
V+ L G+D+ L +ID +
Sbjct: 226 VIPTLKEVKPKDGKDVQL---TIDLR 248
>gnl|CDD|238983 cd02025, PanK, Pantothenate kinase (PanK) catalyzes the
phosphorylation of pantothenic acid to form
4'-phosphopantothenic, which is the first of five steps
in coenzyme A (CoA) biosynthetic pathway. The reaction
carried out by this enzyme is a key regulatory point in
CoA biosynthesis.
Length = 220
Score = 32.3 bits (74), Expect = 0.11
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 78 IIGLTGGIASGKSTIAKYLETL 99
IIG+ G +A GKST A+ L+ L
Sbjct: 1 IIGIAGSVAVGKSTTARVLQAL 22
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and
metabolism].
Length = 218
Score = 32.3 bits (74), Expect = 0.13
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 76 PYIIGLTGGIASGKSTIAKYL 96
IIG+ GG SGK+T+AK L
Sbjct: 8 VIIIGIAGGSGSGKTTVAKEL 28
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 30.9 bits (70), Expect = 0.20
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 79 IGLTGGIASGKSTIAKYLE 97
I +TG SGK+T+AK L
Sbjct: 1 ILITGTPGSGKTTLAKELA 19
>gnl|CDD|232890 TIGR00235, udk, uridine kinase. Model contains a number of
longer eukaryotic proteins and starts bringing in
phosphoribulokinase hits at scores of 160 and below
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 207
Score = 31.6 bits (72), Expect = 0.22
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 73 SPYPYIIGLTGGIASGKSTIAKYL 96
P IIG+ GG SGK+T+A+ +
Sbjct: 3 KPKGIIIGIGGGSGSGKTTVARKI 26
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 31.1 bits (71), Expect = 0.22
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 17/94 (18%)
Query: 78 IIGLTGGIASGKSTIAKYL-ETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
II + G SGKST+ K L E LGA I+ D L H I L D
Sbjct: 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDL-HPP---------ANIAKMAAGIPLND 50
Query: 137 GSIDRKK-LGAIVFSNKDEMNKLNQAIWPLILAQ 169
DR L A+ + KL A +++A
Sbjct: 51 E--DRWPWLQAL---TDALLAKLASAGEGVVVAC 79
>gnl|CDD|234654 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 30.9 bits (71), Expect = 0.32
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 77 YIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQL 109
+IG G +GKSTI + L + LG I+ D L
Sbjct: 8 VLIGFMG---AGKSTIGRLLAKRLGYDFIDTDHL 38
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 30.9 bits (70), Expect = 0.40
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 31/129 (24%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
++G+ G SGKST+ K ++ R Y V G +V G D+AL D
Sbjct: 30 VVGIVGRSGSGKSTLTKLIQ--------------RFY-VPENGRVLVD---GHDLALADP 71
Query: 138 SIDRKKLGAIVFSN-------------KDEMNKLNQAIWPLILAQVKEEIARLSESHKVI 184
+ R+++G ++ N D + + I LA + I+ L E + I
Sbjct: 72 AWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTI 131
Query: 185 VIEAAVLLS 193
V E LS
Sbjct: 132 VGEQGAGLS 140
>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is a
important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP.
Length = 154
Score = 30.2 bits (69), Expect = 0.40
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 77 YIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQL 109
+IG+ G +GK+T+ + L + LG ++ D+L
Sbjct: 3 VLIGMMG---AGKTTVGRLLAKALGLPFVDLDEL 33
>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional.
Length = 176
Score = 30.4 bits (69), Expect = 0.49
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 73 SPYPYIIGLTGGIASGKSTIAK----YLETLGAGLINCDQ------LGHRAYDVGTR 119
P Y+I +TG SGK+TIAK L+ + +I D LGH YD +R
Sbjct: 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSR 60
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 30.3 bits (69), Expect = 0.63
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 27/111 (24%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
+ L G SGKST+ K L GL+ T G V + G D +
Sbjct: 32 RVLLIGPNGSGKSTLLK----LLNGLL-----------KPTSG--EVL-VDGLDTSSEKS 73
Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEA 188
++ ++ +VF N D+ L V++E+A E+ + E
Sbjct: 74 LLELRQKVGLVFQNPDDQ---------LFGPTVEDEVAFGLENLGLPREEI 115
>gnl|CDD|143254 cd05846, Ig1_MRC-OX-2_like, First immunoglobulin (Ig) domain of rat
MRC OX-2 antigen (also known as CD200) and similar
proteins. Ig1_ MRC-OX-2_like: domain similar to the
first immunoglobulin (Ig) domain of rat MRC OX-2 antigen
(also known as CD200). MRC OX-2 is a membrane
glycoprotein expressed in a variety of lymphoid and
non-lymphoid cells in rats. It has a similar broad
distribution pattern in humans. MRC OX-2 may regulate
myeloid cell activity. The protein has an extracellular
portion containing two Ig-like domains, a transmembrane
portion, and a cytoplasmic portion.
Length = 97
Score = 28.9 bits (65), Expect = 0.79
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 160 QAIWPLILAQVKEEIARLSESHKVIVIEA----AVLLSAKWQDQVHEIW-VTF 207
Q W I E IA SE + V + + + S IW VT
Sbjct: 18 QVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTL 70
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 29.5 bits (67), Expect = 0.89
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 77 YIIGLTGGIASGKSTIAKYLETL 99
I+G+ G +GKST+A++LE L
Sbjct: 34 TIVGIAGPPGAGKSTLAEFLEAL 56
>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 29.6 bits (67), Expect = 0.96
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 76 PYIIGLTGGIASGKSTIAKYLE 97
+I TG SGKSTIA LE
Sbjct: 23 GAVIWFTGLSGSGKSTIANALE 44
>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related
GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 29.6 bits (67), Expect = 1.0
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 45 EEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLI 104
E + REL P H +IG+TG +GKST+ +E LG L
Sbjct: 26 VESRRPDHRALARELLRALYPRTGNAH------VIGITGVPGAGKSTL---IEALGRELR 76
Query: 105 NCDQLGHR 112
+ GHR
Sbjct: 77 ---ERGHR 81
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 29.1 bits (66), Expect = 1.1
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 78 IIGLTGGIASGKSTIAKYL-ETLGA 101
+I + G I +GKST+AK L E LG
Sbjct: 1 VIVVEGNIGAGKSTLAKELAEHLGY 25
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 29.5 bits (67), Expect = 1.2
Identities = 32/121 (26%), Positives = 41/121 (33%), Gaps = 17/121 (14%)
Query: 79 IGLTGGIASGKSTIAKYLETLG---AGLINCDQLGHRAYDVGTRGNQVVRELFG---EDI 132
+ + G SGKST+ K L L G I D D+ +R G +D
Sbjct: 502 VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD-----GVDLNDIDLASLRRQVGYVLQDP 556
Query: 133 ALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLL 192
L GSI I N + + I LA E I L + V E L
Sbjct: 557 FLFSGSIREN----IALGNPE--ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANL 610
Query: 193 S 193
S
Sbjct: 611 S 611
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 26.8 bits (60), Expect = 1.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 81 LTGGIASGKSTI 92
LTG SGKST+
Sbjct: 26 LTGPSGSGKSTL 37
>gnl|CDD|234838 PRK00784, PRK00784, cobyric acid synthase; Provisional.
Length = 488
Score = 29.3 bits (67), Expect = 1.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 163 WPLILAQVKEEIARLSESHKVIVIEAA 189
P +L V E + RL+ + V+V+E A
Sbjct: 108 KPRLLEAVLESLDRLAAEYDVVVVEGA 134
>gnl|CDD|223718 COG0645, COG0645, Predicted kinase [General function prediction
only].
Length = 170
Score = 28.5 bits (64), Expect = 1.9
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 78 IIGLTGGI-ASGKSTIAKYL-ETLGAGLINCD 107
+ L GG+ SGKST+A+ L E LGA + D
Sbjct: 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSD 33
>gnl|CDD|224345 COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and
metabolism].
Length = 216
Score = 28.4 bits (64), Expect = 2.5
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 78 IIGLTGGIASGKSTIAKYL-ETLGA 101
+I + G I +GKST+A+ L E LG
Sbjct: 6 VIVIEGMIGAGKSTLAQALAEHLGF 30
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 28.4 bits (64), Expect = 2.9
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Query: 79 IGLTGGIASGKSTIAKYLETLGAGL 103
+ L GG SGKSTIAK L AGL
Sbjct: 508 VALVGGSGSGKSTIAK----LVAGL 528
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 28.0 bits (63), Expect = 3.8
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 31/101 (30%)
Query: 75 YPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIAL 134
Y I+G G SGKSTI+K L GL+ Q G ++ G I+
Sbjct: 37 YVAILGHNG---SGKSTISKIL----TGLLK-PQSGE-------------IKIDGITISK 75
Query: 135 PDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIA 175
+ RKK+G I+F N D NQ I A V+++IA
Sbjct: 76 ENLKEIRKKIG-IIFQNPD-----NQ----FIGATVEDDIA 106
>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 27.8 bits (62), Expect = 4.0
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 167 LAQVKEEIARLSESHKVI-------VIEAAVLLSAKWQDQV 200
LA + EE+A L+ SHKV+ +E A+ KW +V
Sbjct: 85 LAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEV 125
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 27.5 bits (61), Expect = 4.2
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 28/115 (24%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
+I + G SGK+T+A L A ++ T+G +VV +
Sbjct: 1 LILVFGPTGSGKTTLALQL----------------ALNIATKGGKVV-------YVDIEE 37
Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIW-----PLILAQVKEEIARLSESHKVIVIE 187
I+ I S K ++ L K E R +I+++
Sbjct: 38 EIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLRERGGDDLIILD 92
>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK)
catalyzes the phosphorylation of adenosine
5'-phosphosulfate to form 3'-phosphoadenosine
5'-phosphosulfate (PAPS). The end-product PAPS is a
biologically "activated" sulfate form important for the
assimilation of inorganic sulfate.
Length = 149
Score = 27.1 bits (61), Expect = 4.4
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 78 IIGLTGGIASGKSTIAKYLE 97
+I LTG SGKSTIA+ LE
Sbjct: 1 VIWLTGLSGSGKSTIARALE 20
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 27.1 bits (61), Expect = 4.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 81 LTGGIASGKSTIAKYLETLG 100
+TGG ++GK+T+ + L G
Sbjct: 4 ITGGPSTGKTTLLEALAARG 23
>gnl|CDD|224330 COG1412, COG1412, Uncharacterized proteins of PilT N-term./Vapc
superfamily [General function prediction only].
Length = 136
Score = 26.9 bits (60), Expect = 4.5
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 158 LNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAK 195
L P I + V E+ +L H+ A L A+
Sbjct: 38 LGAKYKPAIPSCVIRELEKLKRKHRGKARIAIALKYAE 75
>gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme
involved in the metabolism of nicotinamide adenine
dinucleotide (NAD+). This enzyme catalyzes the
phosphorylation of nicotinamide riboside (NR) to form
nicotinamide mononucleotide (NMN). It defines the NR
salvage pathway of NAD+ biosynthesis in addition to the
pathways through nicotinic acid mononucleotide (NaMN).
This enzyme can also phosphorylate the anticancer drug
tiazofurin, which is an analog of nicotinamide
riboside.
Length = 187
Score = 27.3 bits (61), Expect = 4.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 78 IIGLTGGIASGKSTIAKYL 96
I+G++G SGK+T+AK L
Sbjct: 1 IVGISGVTNSGKTTLAKLL 19
>gnl|CDD|219157 pfam06744, DUF1215, Protein of unknown function (DUF1215). This
family represents a conserved region situated towards
the C-terminal end of several hypothetical bacterial
proteins of unknown function. A few members resemble the
ImcF protein, which has been proposed to be involved in
Vibrio cholerae cell surface reorganisation that results
in increased adherence to epithelial cells line and
increased conjugation frequency.
Length = 125
Score = 26.8 bits (60), Expect = 5.1
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 157 KLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKWQDQVHEIW 204
+ A P L + ++A ++S +V++ A L+A WQ +V+
Sbjct: 2 RRLAARLPAPLRRWLVQLA--TQSWQVVLQPARAQLNAAWQAEVYSFC 47
>gnl|CDD|223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 27.2 bits (61), Expect = 5.3
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 77 YIIGLTGGIASGKSTIAKYL-ETLGAGLIN 105
II + G SGKST+AK L E LG ++
Sbjct: 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLD 34
>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyzes the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 26.9 bits (60), Expect = 5.4
Identities = 33/129 (25%), Positives = 42/129 (32%), Gaps = 36/129 (27%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP 135
I TG SGKSTIA LE G Y G+ V L
Sbjct: 2 GCTIWFTGLSGSGKSTIANALER------KLFAQGISVY--VLDGDNVRHGL-------- 45
Query: 136 DGSIDRKKLGAIVFSNKD-EMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSA 194
K LG FS +D N A E+A+L +IVI + +
Sbjct: 46 -----NKDLG---FSEEDRTENIRRIA-----------EVAKLFADAGLIVITSFISPYR 86
Query: 195 KWQDQVHEI 203
+D E+
Sbjct: 87 ADRDMAREL 95
>gnl|CDD|116541 pfam07931, CPT, Chloramphenicol phosphotransferase-like protein.
The members of this family are all similar to
chloramphenicol 3-O phosphotransferase (CPT) expressed
by Streptomyces venezuelae. Chloramphenicol (Cm) is a
metabolite produced by this bacterium that can inhibit
ribosomal peptidyl transferase activity and therefore
protein production. By transferring a phosphate group to
the C-3 hydroxyl group of Cm, CPT inactivates this
potentially lethal metabolite.
Length = 174
Score = 27.0 bits (60), Expect = 6.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAG 102
II L GG +SGKS+IA+ L+ + G
Sbjct: 3 IILLNGGSSSGKSSIARALQDILDG 27
>gnl|CDD|238988 cd02030, NDUO42, NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is
a family of proteins that are highly similar to
deoxyribonucleoside kinases (dNK). Members of this
family have been identified as one of the subunits of
NADH:Ubiquinone oxioreductase (complex I), a
multi-protein complex located in the inner mitochondrial
membrane. The main function of the complex is to
transport electrons from NADH to ubiquinone, which is
accompanied by the translocation of protons from the
mitochondrial matrix to the inter membrane space.
Length = 219
Score = 26.9 bits (60), Expect = 6.1
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 78 IIGLTGGIASGKSTIAKYL-ETLG 100
+I + G IASGK +AK L E LG
Sbjct: 1 VITVDGNIASGKGKLAKELAEKLG 24
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 27.2 bits (61), Expect = 6.2
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLI 104
II LTG +GK+T+AK L AGLI
Sbjct: 28 IIALTGKNGAGKTTLAKIL----AGLI 50
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 27.3 bits (61), Expect = 6.3
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 135 PDGSIDRKKLGAIVFS-------NKDEMNKLNQAIWPLILAQVKEEIARLSESHKVI 184
P I L V S NK+E+ LN+ I P I +E+ L KVI
Sbjct: 284 PTDVIPDAALAVAVSSKLRHVEENKNELEHLNEEILPKIKKAAEEDKEILGIRDKVI 340
>gnl|CDD|219519 pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after
Kidins220/ARMS and PifA) family of predicted NTPases
are sporadically distributed across a wide phylogenetic
range in bacteria and in animals. Many of the
prokaryotic KAP NTPases are encoded in plasmids and
tend to undergo disruption to form pseudogenes. A
unique feature of all eukaryotic and certain bacterial
KAP NTPases is the presence of two or four
transmembrane helices inserted into the P-loop NTPase
domain. These transmembrane helices anchor KAP NTPases
in the membrane such that the P-loop domain is located
on the intracellular side.
Length = 301
Score = 27.0 bits (60), Expect = 7.0
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 70 PHLSPYPYIIGLTGGIASGKSTIAKYLE 97
P L+P ++IGL G SGK++ LE
Sbjct: 15 PSLAP-GFVIGLYGAWGSGKTSFLNLLE 41
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 26.3 bits (59), Expect = 7.5
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 78 IIGLTGGIASGKSTIAKYL-ETLGAGLIN 105
II + G SGKST+AK L + LG ++
Sbjct: 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLD 29
>gnl|CDD|226412 COG3896, COG3896, Chloramphenicol 3-O-phosphotransferase [Defense
mechanisms].
Length = 205
Score = 26.8 bits (59), Expect = 7.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAG 102
I+ L GG ++GKS+IA + L A
Sbjct: 25 IVLLNGGSSAGKSSIALAFQDLAAE 49
>gnl|CDD|151671 pfam11229, DUF3028, Protein of unknown function (DUF3028). This
eukaryotic family of proteins has no known function.
Length = 589
Score = 26.9 bits (59), Expect = 8.3
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 134 LPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLS 193
LP+GS R +G + K K +++ P +L V + IA + ES++ + A LLS
Sbjct: 146 LPEGSFIRAAIGFFITGGK----KGPESVPPSLLKVVMKPIATVGESYQYPPVNWAALLS 201
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 27.0 bits (60), Expect = 8.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 78 IIGLTGGIASGKSTIAKYLETL 99
IG+ G SGKST+ K L+ L
Sbjct: 485 FIGIVGPSGSGKSTLTKLLQRL 506
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 27.1 bits (61), Expect = 8.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 79 IGLTGGIASGKSTIAKYL 96
+ + G I SGKST+ K L
Sbjct: 494 VAIIGRIGSGKSTLLKLL 511
>gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of a group of gluconate kinases (GntK, also
known as gluconokinase; EC 2.7.1.12) encoded by the gntK
gene, which catalyzes the ATP-dependent phosphorylation
of D-gluconate and produce 6-phospho-D-gluconate and
ADP. The presence of Mg2+ might be required for
catalytic activity. The prototypical member of this
subfamily is GntK from Lactobacillus acidophilus. Unlike
Escherichia coli GntK, which belongs to the superfamily
of P-loop containing nucleoside triphosphate hydrolases,
members in this subfamily are homologous to glycerol
kinase, xylulose kinase, and rhamnulokinase from
Escherichia coli. They have been classified as members
of the FGGY family of carbohydrate kinases, which
contain two large domains separated by a deep cleft that
forms the active site. This model spans both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Some uncharacterized homologous sequences are also
included in this subfamily. The Lactobacillus gnt operon
contains a single gntK gene. The gnt operons of some
bacteria, such as Corynebacterium glutamicum, have two
gntK genes. For example, the C. glutamicum gnt operon
has both a gluconate kinase gntV gene (also known as
gntK) and a second hypothetical gntK gene (also known as
gntK2). Both gluconate kinases encoded by these genes
belong to this family, however the protein encoded by C.
glutamicum gntV is not included in this model as it is
truncated in the C-terminal domain.
Length = 440
Score = 26.8 bits (60), Expect = 8.7
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 62 LRKPV-QPKPHLSPYP-----YIIGLTGGIASGKSTIAKYLETLGAGL-INCDQLGHRAY 114
L +PV P L Y +++G G + +G + +TL ++LG Y
Sbjct: 266 LDQPVTDPPGRLFCYRLDKGRWVLG--GAVNNGGIVLRWLRDTLALPEEEEAEELGIDPY 323
Query: 115 DVGTRGNQVVRELFGEDIALP 135
D TRG + + GE P
Sbjct: 324 DGLTRGLEFLPAGAGE-RFPP 343
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 27.0 bits (60), Expect = 8.8
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 14 KVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGTLRKPVQPKPHLS 73
++ +LR L+P D V V D + L S +RE +L P+ P +
Sbjct: 1003 RIQKLRKKAGLEPTDKVEVFFESLDEVDESALSQVLKSQAQYIRE--SLGSPLLPSSMMP 1060
Query: 74 PYPYIIG 80
+ +I
Sbjct: 1061 SHAVVIA 1067
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They
belong to the subfamily C of the ATP-binding cassette
(ABC) superfamily of transport proteins. The ABCC
subfamily contains transporters with a diverse
functional spectrum that includes ion transport, cell
surface receptor, and toxin secretion activities. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains, each composed of six
transmembrane (TM) helices, and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 171
Score = 26.2 bits (59), Expect = 9.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 78 IIGLTGGIASGKSTIAK 94
+ + G SGKST+ K
Sbjct: 30 KVAIVGPSGSGKSTLLK 46
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 26.2 bits (57), Expect = 9.5
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 12/119 (10%)
Query: 78 IIGLTGGIASGKST----IAKYLETLGAG--LINCDQLGHRAYDVGTRGNQVVRELFGED 131
+I + G SGK+T +A+ L G G I+ + + D ++ G
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG 63
Query: 132 IALPDGSID--RKKLGAIVFSNKDEMNKL--NQAIWPLILAQVKEEIARLSESHKVIVI 186
++ RK ++ DE+ L + L+L + + L + VI
Sbjct: 64 ELRLRLALALARKLKPDVLI--LDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVI 120
>gnl|CDD|238139 cd00227, CPT, Chloramphenicol (Cm) phosphotransferase (CPT).
Cm-inactivating enzyme; modifies the primary (C-3)
hydroxyl of the antibiotic. Related structurally to
shikimate kinase II.
Length = 175
Score = 26.3 bits (58), Expect = 9.7
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAG 102
II L GG ++GKS+IA+ L+++ A
Sbjct: 4 IIILNGGSSAGKSSIARALQSVLAE 28
>gnl|CDD|165400 PHA03128, PHA03128, dUTPase; Provisional.
Length = 376
Score = 26.8 bits (59), Expect = 9.7
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 36 PSDGKVDEQEEDKLSSSNLRMRELGTLRKPVQPKPHLSP 74
+ VDE EED+ SS + V PKP P
Sbjct: 338 CENEDVDETEEDEKSSDAESPVNTSDVIFDVGPKPPRHP 376
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.135 0.383
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,051,126
Number of extensions: 1065584
Number of successful extensions: 1074
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1058
Number of HSP's successfully gapped: 113
Length of query: 212
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 119
Effective length of database: 6,812,680
Effective search space: 810708920
Effective search space used: 810708920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.2 bits)