RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17138
(212 letters)
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849,
bifunctional coenzyme A synthase (COA synthase), S
genomics; HET: ACO UNL; 1.70A {Mus musculus}
Length = 281
Score = 241 bits (618), Expect = 6e-81
Identities = 89/201 (44%), Positives = 121/201 (60%), Gaps = 2/201 (0%)
Query: 13 VKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGTLRKPVQPKPHL 72
+ VN R+ N + L + + LL D +E EEDK+SSS+ R R LG L +P +P L
Sbjct: 13 MAVNRFRLENGKEELALYQIQLLK-DQSHNENEEDKVSSSSFRQRILGNLLQPPNERPEL 71
Query: 73 SPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDI 132
Y++GLTG SGKS++A+ L+ LGA +I+ D LGHRAY G Q V E FG DI
Sbjct: 72 PSGLYVLGLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDI 131
Query: 133 ALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARL-SESHKVIVIEAAVL 191
DG+I+RK LG+ VF NK +M L +WP+I +EE+ ++ + VI+AA+L
Sbjct: 132 LHKDGTINRKVLGSRVFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAML 191
Query: 192 LSAKWQDQVHEIWVTFIPEQE 212
L A WQ VHE+W IPE E
Sbjct: 192 LEAGWQSMVHEVWTVVIPETE 212
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Length = 204
Score = 157 bits (399), Expect = 9e-49
Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Query: 77 YIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
IGLTG I GKST+A+ LGA +++ D+L H Y G + V + FG+ I +
Sbjct: 2 KRIGLTGNIGCGKSTVAQMFRELGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEE 61
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAKW 196
G+IDRKKL IVF +++++ KL + + ++++ LSE + ++EA++L+
Sbjct: 62 GNIDRKKLADIVFKDEEKLRKLEEITHRALYKEIEKITKNLSE-DTLFILEASLLVEKGT 120
Query: 197 QDQVHEIWVTFIPEQ 211
++ V + P +
Sbjct: 121 YKNYDKLIVVYAPYE 135
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme
kinase, structural genomics, joint center for structural
GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Length = 192
Score = 148 bits (377), Expect = 1e-45
Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 8/145 (5%)
Query: 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLET-LGAGLINCDQLGHRAYDVGTRGNQVVREL 127
K H + +IG+TG I +GKST+ + L+ GA ++N D++GH + + + EL
Sbjct: 5 KIHHHHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVK---EKLVEL 61
Query: 128 FGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIE 187
FG + L DG ++RKKL IVF +++ + KL + PL+ +V+E I + + +IVIE
Sbjct: 62 FGGSV-LEDGKVNRKKLAGIVFESRENLKKLELLVHPLMKKRVQEIINK---TSGLIVIE 117
Query: 188 AAVLLSAKWQDQVHEIWVTFIPEQE 212
AA+L + +
Sbjct: 118 AALLKRMGLDQLCDHVITVVASRET 142
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2
function project, S2F, structural genomics, transferase;
HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Length = 206
Score = 146 bits (371), Expect = 1e-44
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP 135
YI+GLTGGI SGK+TIA LG L++ D + + + E FG I
Sbjct: 2 TYIVGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTE 61
Query: 136 DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAK 195
G ++R L VF++ ++ LN + P I ++K+++A ++ + +L+ K
Sbjct: 62 QGELNRAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLAE--QTAPYTLFVVPLLIENK 119
Query: 196 WQDQVHEIWVTFIPEQ 211
I V + Q
Sbjct: 120 LTALCDRILVVDVSPQ 135
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3;
1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A*
1viy_A 1t3h_A 1n3b_A
Length = 218
Score = 146 bits (370), Expect = 3e-44
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP 135
YI+ LTGGI SGKST+A LG +I+ D + + + G + + FG ++
Sbjct: 4 RYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAA 63
Query: 136 DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLLSAK 195
DG++ R+ L +F+N +E N LN + PLI + + +I + + ++ +L+
Sbjct: 64 DGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQA--TSPYVLWVVPLLVENS 121
Query: 196 WQDQVHEIWVTFIPEQ 211
+ + + V + +
Sbjct: 122 LYKKANRVLVVDVSPE 137
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus}
SCOP: c.37.1.1
Length = 203
Score = 139 bits (354), Expect = 5e-42
Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 7/141 (4%)
Query: 71 HLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGE 130
H + +P IIG+TG I SGKST+A L + G +++ D L RA + ++ LF E
Sbjct: 3 HEAKHPIIIGITGNIGSGKSTVAALLRSWGYPVLDLDALAARARENKEEE---LKRLFPE 59
Query: 131 DIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAV 190
+ G +DR+ L +VFS+ + + L + P + + EE++RL ++ +E +
Sbjct: 60 AVV--GGRLDRRALARLVFSDPERLKALEAVVHPEVRRLLMEELSRL--EAPLVFLEIPL 115
Query: 191 LLSAKWQDQVHEIWVTFIPEQ 211
L W+ ++H + P +
Sbjct: 116 LFEKGWEGRLHGTLLVAAPLE 136
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown
function, structural genomics, MCSG, PSI-2, protein
structure initiative; 1.60A {Archaeoglobus fulgidus}
Length = 148
Score = 54.6 bits (131), Expect = 6e-10
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 2 LIVSAETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMREL 59
L+VS ET +K+N+ R + + +V V + ++ +SS+ ++ E+
Sbjct: 90 LVVSPETYEMALKINQKREELGKRKITIVKVDW------MMAEDGKPISSTRIKRGEI 141
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 54.9 bits (132), Expect = 8e-10
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 17/118 (14%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
+I +TG SGKS AK L+ GA +I + + E + +
Sbjct: 3 VILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKR---------YSIEAKPGERLMDFA 53
Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLIL-------AQVKEEIARLSESHKVIVIEA 188
R+ G V + + +L + L++ A+V+E L +S ++ + +
Sbjct: 54 KRLREIYGDGVVARL-CVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHS 110
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 2e-05
Identities = 32/183 (17%), Positives = 69/183 (37%), Gaps = 51/183 (27%)
Query: 43 EQEEDKLSSSN--------LRMRELGTLRKPVQPKPHLSPYPYII--GLTGGIASGKSTI 92
++ D+L + N R++ LR+ + L P ++ G+ G SGK+ +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL---ELRPAKNVLIDGVLG---SGKTWV 166
Query: 93 AKYLETLGAGLINCDQLGHRAYDVGTR-GNQV--VRELFGEDIALPDGSIDR-KKLGAIV 148
A L+ +Y V + ++ + + P+ ++ +KL +
Sbjct: 167 A--LDVC------------LSYKVQCKMDFKIFWLN--LKNCNS-PETVLEMLQKLLYQI 209
Query: 149 FSNKDEMNKLNQAIWPLILAQVKEEIARL--SESHKVIVIEAAVLLSAKWQDQV--HEIW 204
N + + I L + ++ E+ RL S+ ++ ++ VL V + W
Sbjct: 210 DPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLL---VL------LNVQNAKAW 259
Query: 205 VTF 207
F
Sbjct: 260 NAF 262
Score = 42.9 bits (100), Expect = 4e-05
Identities = 32/192 (16%), Positives = 65/192 (33%), Gaps = 44/192 (22%)
Query: 20 VANSLKPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMR--ELGTLRKPVQPKPHLSPYPY 77
V + L + L + E L L R +L P + P
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-----PREVLTTN---PR 328
Query: 78 IIGLTGG-IASGKSTIAKYLETLGAGLINCDQLGH---RAYDVGTRGNQVVRELFGEDIA 133
+ + I G +T + +NCD+L + +V R++F + ++
Sbjct: 329 RLSIIAESIRDGLATWDNWKH------VNCDKLTTIIESSLNVLEPAEY--RKMF-DRLS 379
Query: 134 -LPDGS-IDRKKLGAIVFSNKDE------MNKLNQ----AIWP--------LILAQVKEE 173
P + I L ++++ + + +NKL++ P I ++K +
Sbjct: 380 VFPPSAHIPTILL-SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 174 IARLSESHKVIV 185
+ H+ IV
Sbjct: 439 LENEYALHRSIV 450
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 38.5 bits (90), Expect = 6e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99
P ++ L+G SGKST++ L
Sbjct: 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 38.0 bits (89), Expect = 0.001
Identities = 16/29 (55%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Query: 73 SPYPYIIGLTGGIASGKSTIAKYL-ETLG 100
+P P++IG+ GG ASGK+T+A+ L TLG
Sbjct: 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 37.1 bits (86), Expect = 0.001
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 76 PYIIGLTGGIASGKSTIAKYL-ETLG-AGLINCD 107
+IIG++G SGK+T+AK L + L +I+ D
Sbjct: 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 37.1 bits (86), Expect = 0.002
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 76 PYIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQ 108
P++IG++GG ASGKS++ + + LG ++ Q
Sbjct: 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQ 55
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 36.6 bits (84), Expect = 0.004
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 73 SPYPYIIGLTGGIASGKSTIAKYLE 97
S II +TG +G ST+ +
Sbjct: 2 SKKHPIISVTGSSGAGTSTVKHTFD 26
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 36.2 bits (84), Expect = 0.004
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 9/134 (6%)
Query: 76 PYIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQLGHRAY--DVGTRGNQVVRELFGEDI 132
++G+ G SGK+T+A L +TL I+ + + R + E F
Sbjct: 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYY- 80
Query: 133 ALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVLL 192
D + L +F ++L + + L +I+IE L
Sbjct: 81 --YL-QWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYL-SDSDMIMIEGVFLQ 136
Query: 193 SAKWQDQVHE-IWV 205
+W+ +++
Sbjct: 137 RKEWRPFFDFVVYL 150
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 36.3 bits (84), Expect = 0.004
Identities = 14/27 (51%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 76 PYIIGLTGGIASGKSTIAKYL-ETLGA 101
P++IG++GG ASGKST+ + + E LG
Sbjct: 25 PFLIGVSGGTASGKSTVCEKIMELLGQ 51
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 35.3 bits (81), Expect = 0.007
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 76 PYIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQLGHRAYD 115
P +I +TG A+GK+T+++ L L L++ D +D
Sbjct: 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFD 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.008
Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 46/192 (23%)
Query: 29 VVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGTLRKPVQPK-----PHLSPYPYI-IGLT 82
S+P PS + + + + S L + ++ VQ HL + I L
Sbjct: 316 NTSLP--PSILEDSLENNEGVPSPMLSIS--NLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 83 GG----IASGKSTIAKYLETLGAGL------INCDQ----LGHRAYDVGTRGNQV----- 123
G + SG + L L L DQ R R V
Sbjct: 372 NGAKNLVVSGP---PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 124 ------VRELFGEDIALPDGSIDRKKLGAIVFSNKD--EMNKLNQAIWPLILAQVK---- 171
+L +D+ + S + K + V+ D ++ L+ +I I+ +
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 172 --EEIARLSESH 181
E + +H
Sbjct: 489 KWETTTQFKATH 500
Score = 30.4 bits (68), Expect = 0.52
Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 42/127 (33%)
Query: 90 STIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKLGAIVF 149
A+ L L ++ +++ + T+G ++ L PD L +I
Sbjct: 189 KFSAETLSELIRTTLDAEKV----F---TQGLNILEWLENPSNT-PDKDY----LLSIPI 236
Query: 150 SNKDEMNKLNQAIWPLI-LAQ-----------------VKEEIARLSESHKVIVIEAAVL 191
S PLI + Q ++ + + + +V A+
Sbjct: 237 S------------CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 192 LSAKWQD 198
+ W+
Sbjct: 285 ETDSWES 291
Score = 29.6 bits (66), Expect = 0.77
Identities = 32/195 (16%), Positives = 59/195 (30%), Gaps = 79/195 (40%)
Query: 21 ANSLKPLDV--------VSVP----------------LLPSDGKVDEQEEDKLSSSNLRM 56
A S +PL + + VP +LP + +++ + + L
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 57 RELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDV 116
+ LG + V+P S + ++ + L L + Y
Sbjct: 63 KFLGYVSSLVEP---------------------SKVGQFDQVLNLCL---TEF-ENCY-- 95
Query: 117 GTRGNQVVRELFGEDI-----ALP---DGSIDRKK------LGAIVFSNKDEMNKLNQAI 162
L G DI L D ++ + K + A + + + K N A
Sbjct: 96 ----------LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA- 144
Query: 163 WPLILAQVKEEIARL 177
+ V E A+L
Sbjct: 145 ---LFRAVGEGNAQL 156
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 35.0 bits (80), Expect = 0.009
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 63 RKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQLGHRA 113
+ + +P I + G SGKS++ + + E G I D L
Sbjct: 5 IEYKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPE 56
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 34.4 bits (78), Expect = 0.011
Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 26/137 (18%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP 135
+I L GG ++GKS I + L+ L G + E +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQ---------SVLPEPWLAFGVD---SLIEAMPLKMQSA 50
Query: 136 DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAAVL---- 191
+G I+ G + + + E + ++ + I+I+ L
Sbjct: 51 EGGIEFDADGGVSI----------GPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAA 100
Query: 192 LSAKWQDQVHEIWVTFI 208
+W+ V ++ V ++
Sbjct: 101 AQERWRSFVGDLDVLWV 117
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 34.5 bits (78), Expect = 0.014
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 9/110 (8%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
+I L+G SGK T A ++ Y + + +G A D
Sbjct: 3 LIFLSGVKRSGKDTTADFI---------MSNYSAVKYQLAGPIKDALAYAWGVFAANTDY 53
Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIE 187
+K + +++ L + I+ Q + S V V +
Sbjct: 54 PCLTRKEFEGIDYDRETNLNLTKLEVITIMEQAFCYLNGKSPIKGVFVFD 103
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis,
nucleotide binding binding, cytoplasm,
nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium
tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A*
3avo_A* 3avq_A*
Length = 312
Score = 34.9 bits (80), Expect = 0.014
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 50 SSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETL 99
+ L L +P Q P P+IIG+ G +A GKST A+ L+ L
Sbjct: 66 ARQRLFAATAEFLGEPQQNPDR--PVPFIIGVAGSVAVGKSTTARVLQAL 113
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 34.3 bits (78), Expect = 0.016
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 67 QPKPHLSPYPYIIGLTGGIASGKSTIAKYLE 97
K P+ + + G I SGK+T + E
Sbjct: 11 GTKYAEGTQPFTVLIEGNIGSGKTTYLNHFE 41
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 34.3 bits (78), Expect = 0.016
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 76 PYIIGLTGGIASGKSTIAKYL 96
P + + G IA GKST K L
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLL 22
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 34.0 bits (77), Expect = 0.026
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLE 97
P I + G IA+GKST L+
Sbjct: 13 PSFSASSEGTRIKKISIEGNIAAGKSTFVNILK 45
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 33.8 bits (76), Expect = 0.029
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 73 SPYPYIIGLTGGIASGKSTIAKYLETL 99
+ P I +G SGKS + +
Sbjct: 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 33.4 bits (77), Expect = 0.042
Identities = 22/135 (16%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 71 HLSPYPY---IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVREL 127
+ P ++G+ G +GK+T K L AG + + + + V+R
Sbjct: 109 YRLPIVKDGMVVGIVGPNGTGKTTAVKIL----AGQLIPN-----LCEDNDSWDNVIRAF 159
Query: 128 FGEDIALPDGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIE 187
G ++ + ++ +V K + L + +V+E + ++ E K +
Sbjct: 160 RGNELQNYFERLKNGEIRPVV---KPQYVDLLPKA---VKGKVRELLKKVDEVGKFEEVV 213
Query: 188 AAVLLSAKWQDQVHE 202
+ L ++H+
Sbjct: 214 KELELENVLDRELHQ 228
Score = 26.5 bits (59), Expect = 7.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQ 108
+IG+ G GK+T K L AG+ +
Sbjct: 384 VIGIVGPNGIGKTTFVKML----AGVEEPTE 410
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A
{Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Length = 308
Score = 33.4 bits (76), Expect = 0.043
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETL 99
PYII + G +A GKST A+ L+ L
Sbjct: 80 PYIISIAGSVAVGKSTTARVLQAL 103
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 32.4 bits (73), Expect = 0.067
Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 8/133 (6%)
Query: 78 IIGLTGGIASGKSTIAKYL-ETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
II + SG + K L E LG + D L + D +
Sbjct: 16 IITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFRL----ADEKAGN 71
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIE---AAVLLS 193
+ R G + + + E + L+ES I + VL
Sbjct: 72 NLLYRLGGGRKIDLHSKPSPNDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLDQ 131
Query: 194 AKWQDQVHEIWVT 206
+ +++ I+V
Sbjct: 132 DEDIERLIRIFVY 144
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 31.9 bits (72), Expect = 0.079
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 73 SPYPYIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQLGHRA 113
+ +I L G SGKS +A + L A ++ D L R
Sbjct: 5 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR 46
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 31.6 bits (71), Expect = 0.12
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 76 PYIIGLTGGIASGKSTIAKYL 96
I+ L+G SGKSTIA+ L
Sbjct: 9 GNILLLSGHPGSGKSTIAEAL 29
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 32.0 bits (72), Expect = 0.12
Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 76 PYIIGLTGGIASGKSTIAKYL--ETLGAGLINCDQLGHRAYDVGTRGN 121
II G SGKST A+ + G IN D R
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDE 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 31.5 bits (72), Expect = 0.17
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCD--------QLGHRAYDVGTRGNQVVRELFG 129
I+ + G +GK+T+ K L AG + D + + + + VR+LF
Sbjct: 380 ILVMMGENGTGKTTLIKLL----AGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFF 435
Query: 130 EDI 132
+ I
Sbjct: 436 KKI 438
Score = 29.6 bits (67), Expect = 0.83
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
++GL G GKST K L AG + LG +D ++++ G ++
Sbjct: 105 VLGLVGTNGIGKSTALKIL----AGKQKPN-LGR--FDDPPEWQEIIKYFRGSELQNYFT 157
Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKV 183
+ + AI+ + I +K + ++ E K+
Sbjct: 158 KMLEDDIKAIIKPQYVD----------NIPRAIKGPVQKVGELLKL 193
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 30.8 bits (70), Expect = 0.17
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 78 IIGLTGGIASGKSTIAKYL-ETLGAGLINCDQL 109
+I L G KST+A L + L +I
Sbjct: 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSF 35
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 30.8 bits (69), Expect = 0.19
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 79 IGLTGGIASGKSTIAKYL-ETLGAGLINCDQL 109
I LTG GK+T+ K L G IN L
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINVGDL 45
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 31.4 bits (71), Expect = 0.20
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 50 SSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYL-ETLGAGLINCD- 107
+S + T V + ++ L G +GKS ++ L +IN D
Sbjct: 14 ASVAMAAAPTTTTTTNVSLRRQRHRKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73
Query: 108 -QLGHRAYDVGT 118
Q+ ++ D+ T
Sbjct: 74 MQV-YKGLDITT 84
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 30.1 bits (68), Expect = 0.31
Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 76 PYIIGLTGGIASGKSTIAKYL--ETLGAGLINCDQLGHRAYDVGTRGN 121
II G SGKST A+ + G IN D R
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDE 49
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 30.3 bits (69), Expect = 0.33
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 34/98 (34%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
+ G TG SGKST+ + + AGLI T G+ + GE +
Sbjct: 38 VAGNTG---SGKSTLLQIV----AGLI-----------EPTSGDVLY---DGERKKGYE- 75
Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIA 175
I R+ +G I F + +Q +V +E+A
Sbjct: 76 -I-RRNIG-IAFQYPE-----DQ----FFAERVFDEVA 101
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.0 bits (67), Expect = 0.39
Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 10/129 (7%)
Query: 79 IGLTGGIASGKST-IAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
I +TG GK+T + K +E LG I R + R + G+
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIE---AAVLLSA 194
KKL V S + + P++ +E + KVI+I+ L S
Sbjct: 63 FFTSKKL---VGSYGVNVQYFEELAIPILERAYREAK---KDRRKVIIIDEIGKMELFSK 116
Query: 195 KWQDQVHEI 203
K++D V +I
Sbjct: 117 KFRDLVRQI 125
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 30.0 bits (67), Expect = 0.41
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 78 IIGLTGGIASGKSTIAKYL-ETLGAGLI 104
I + G + +GKSTI+ + + LG +
Sbjct: 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 30.0 bits (67), Expect = 0.42
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 78 IIGLTGGIASGKSTIAKYL 96
++ +G SGK + + L
Sbjct: 13 VLLFSGKRKSGKDFVTEAL 31
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
transferase-transferase complex; HET: ADX ANP; 1.79A
{Arabidopsis thaliana} PDB: 4fxp_A*
Length = 200
Score = 29.9 bits (68), Expect = 0.45
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 76 PYIIGLTGGIASGKSTIAKYLE 97
+I +TG SGKST+A L
Sbjct: 25 GCVIWVTGLSGSGKSTLACALN 46
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in
complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo
sapiens} PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 29.8 bits (68), Expect = 0.47
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 76 PYIIGLTGGIASGKSTIAKYLE 97
+ LTG +GK+T++ LE
Sbjct: 5 GCTVWLTGLSGAGKTTVSMALE 26
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met
nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A
{Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A*
1m7h_A* 3cr7_A*
Length = 211
Score = 29.5 bits (67), Expect = 0.53
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 76 PYIIGLTGGIASGKSTIAKYLE 97
I LTG ASGKST+A LE
Sbjct: 25 GLTIWLTGLSASGKSTLAVELE 46
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics,
NPPSFA, national P protein structural and functional
analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 29.4 bits (67), Expect = 0.60
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAY 114
++ LTG SGK+TIA L L L + G+R
Sbjct: 13 GIVVWLTGLPGSGKTTIATRLADL---LQ---KEGYRVE 45
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 29.5 bits (66), Expect = 0.64
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 78 IIGLTGGIASGKSTIAKYL-ETLGAGLI 104
+ +TG GKST K L L
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAY 31
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 29.4 bits (67), Expect = 0.66
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 33/100 (33%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
I+G G GKST+ + G++ + G + + I
Sbjct: 39 ILGGNG---VGKSTLFQNF----NGIL-----------KPSSGRILFD---NKPIDYSRK 77
Query: 138 SID--RKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIA 175
I R+ +G IVF + D NQ L A V ++++
Sbjct: 78 GIMKLRESIG-IVFQDPD-----NQ----LFSASVYQDVS 107
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 29.7 bits (66), Expect = 0.74
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 79 IGLTGGIASGKSTIAKYLE 97
I L G GKST + +
Sbjct: 10 IYLDGVYGIGKSTTGRVMA 28
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase
1; transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 29.8 bits (67), Expect = 0.75
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 81 LTGGIASGKSTIAKYLE 97
LTG +GK+T++ LE
Sbjct: 57 LTGLSGAGKTTVSMALE 73
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 29.5 bits (67), Expect = 0.91
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 175 ARLSESHKVIVIEA 188
A LSE +KV+V+E
Sbjct: 43 ATLSEKYKVLVLER 56
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.4
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 171 KEEIARLSESHKVIVIEAAVLLSAK 195
K+ + +L S K+ ++A L+ K
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIK 43
Score = 26.5 bits (57), Expect = 5.4
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 12/34 (35%)
Query: 42 DEQEEDKLSSSNLRMRELGTLRKPVQPK--PHLS 73
++Q KL +S L K P L+
Sbjct: 18 EKQALKKLQAS-L---------KLYADDSAPALA 41
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 28.4 bits (63), Expect = 1.4
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETL--GAGLINCDQLG 110
II + G GK+ A L G+ + +++G
Sbjct: 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMG 41
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 28.5 bits (64), Expect = 1.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 69 KPHLSPYPYIIGLTGGIASGKSTIAKYL 96
+PH+ +G+ G I GK+T++K L
Sbjct: 12 RPHMDFKNINLGIFGHIDHGKTTLSKVL 39
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 27.9 bits (63), Expect = 1.5
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 77 YIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQL 109
+++G G G +T+ + L LG ++ D
Sbjct: 6 FMVGARG---CGMTTVGRELARALGYEFVDTDIF 36
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 28.3 bits (63), Expect = 1.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 81 LTGGIASGKSTIAKYLE 97
LTG GKST +K L
Sbjct: 9 LTGLPGVGKSTFSKNLA 25
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 27.9 bits (63), Expect = 1.7
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 77 YIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQL 109
Y+IGL G +GK+++ L + L + D+
Sbjct: 9 YLIGLMG---AGKTSVGSQLAKLTKRILYDSDKE 39
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 28.6 bits (63), Expect = 1.7
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 69 KPHLSPYPYIIGLTGGIASGKSTIAKYLE 97
K + I L G GK+T A+
Sbjct: 5 KTDVKMGVLRIYLDGAYGIGKTTAAEEFL 33
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 28.1 bits (62), Expect = 1.7
Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 23/108 (21%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
++ +TG G +T ++ + + + ++ G+ +V +E
Sbjct: 5 VVVVTGVPGVGSTTSSQLA----MDNLRKEGVNYKMVSFGSVMFEVAKEENL-------- 52
Query: 138 SIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIV 185
S++D+M K++ I +IA +++ V V
Sbjct: 53 -----------VSDRDQMRKMDPETQKRIQKMAGRKIAEMAKESPVAV 89
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 27.9 bits (63), Expect = 2.0
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 77 YIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQL 109
++GL G SGKSTI + L + LG GL++ D
Sbjct: 6 VLVGLPG---SGKSTIGRRLAKALGVGLLDTDVA 36
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 27.7 bits (61), Expect = 2.0
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 58 ELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQLGHRA 113
+LGT Q P +++ + G SGK+TIA + + G D
Sbjct: 12 DLGTENLYFQSMMTGEPTRHVV-VMGVSGSGKTTIAHGVADETGLEFAEADAFHSPE 67
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups,
carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Length = 321
Score = 28.0 bits (62), Expect = 2.0
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 76 PYIIGLTGGIASGKSTIAKYLETL 99
PYIIG+ G +A GKST ++ L+ L
Sbjct: 92 PYIIGIAGSVAVGKSTTSRVLKAL 115
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 28.5 bits (64), Expect = 2.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQ 108
IIG+ G GK+T A+ L G I D+
Sbjct: 296 IIGILGPNGIGKTTFARIL----VGEITADE 322
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 27.8 bits (61), Expect = 2.2
Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 7/131 (5%)
Query: 79 IGLTGGIASGKST-IAKYLETLGA-GLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPD 136
+ LTG GK+T I K E L + G+ G R V L G L
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 137 GSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEAA---VLLS 193
++ + ++ + L L ++ +V VI+ L S
Sbjct: 64 VGLEPPPGKRECRVGQYVVDL--TSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 194 AKWQDQVHEIW 204
+ V +
Sbjct: 122 QLFIQAVRQTL 132
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 27.5 bits (62), Expect = 2.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 77 YIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQL 109
IG G SGKST+A+ L + L ++ D L
Sbjct: 8 VFIGFMG---SGKSTLARALAKDLDLVFLDSDFL 38
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene
therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 27.8 bits (61), Expect = 2.4
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 83 GGIASGKSTIAKYLETLGA 101
G GK+T + L LG+
Sbjct: 11 GPHGMGKTTTTQLLVALGS 29
>2wjn_H Reaction center protein H chain; bacteriochlorophyll,
lipidic-sponge phase, photosynthesis, R center, electron
transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7
NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H*
1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H*
2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H*
6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Length = 258
Score = 27.6 bits (61), Expect = 2.6
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 6 AETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLSS 51
+ + + V + +VP L S ++ +EEDK+S+
Sbjct: 201 CDVKKDKIVVTSILSEQ------FANVPRLQSRDQITLREEDKVSA 240
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 27.6 bits (62), Expect = 3.0
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 17/100 (17%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDG 137
++G+ G +GKST K L AG L + V+R G ++
Sbjct: 49 VVGIVGPNGTGKSTAVKIL----AGQ-----LIPNLCGDNDSWDGVIRAFRGNELQ---- 95
Query: 138 SIDRKKLGAIVFSN-KDEMNKLNQAIWPLILAQVKEEIAR 176
+ K + K + L + +V E + +
Sbjct: 96 NYFEKLKNGEIRPVVKPQYVDLIPKA---VKGKVIELLKK 132
Score = 27.3 bits (61), Expect = 4.8
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQ 108
+IG+ G GK+T K L AG+ +
Sbjct: 314 VIGIVGPNGIGKTTFVKML----AGVEEPTE 340
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 27.1 bits (61), Expect = 3.1
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 77 YIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQL 109
+IG G SGKS++A+ L L +++ D +
Sbjct: 11 VLIGFMG---SGKSSLAQELGLALKLEVLDTDMI 41
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 27.0 bits (59), Expect = 3.6
Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 17/113 (15%)
Query: 78 IIGLTGGIASGKSTIAKYL--ETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALP 135
I +TG +GK+++A+ + E G + +L + E
Sbjct: 12 NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDT--------ELDTHI 63
Query: 136 DGSIDRKKLGAIVFSNKDEMNKLNQAIWPLILAQVKEEIARLSESHKVIVIEA 188
D +L D M + + ++ E+ H V+V+
Sbjct: 64 IEEKDEDRL-------LDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHT 109
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 26.7 bits (60), Expect = 4.0
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 77 YIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQL 109
+++G G +GKSTI + L + L + DQ
Sbjct: 8 FLVGPMG---AGKSTIGRQLAQQLNMEFYDSDQE 38
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton
TR pathway, revertant, integral membrane protein,
photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A
{Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB:
1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H*
1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H*
1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Length = 260
Score = 26.8 bits (59), Expect = 4.7
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 6 AETQGGGVKVNELRVANSLKPLDVVSVPLLPSDGKVDEQEEDKLS 50
+ Q V VN L +P + S +V EEDK+
Sbjct: 196 VKVQSNRVHVNALSSDL------FAGIPTIKSPTEVTLLEEDKIC 234
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 26.8 bits (58), Expect = 5.1
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 73 SPYPYIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQLGHRAY 114
S P I L G +GK+TI + + ++ D R+
Sbjct: 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQ 71
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 26.8 bits (59), Expect = 5.3
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 41 VDEQEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGGIASGKSTIAKYLETLG 100
V+ K + + ++++ + + P + +GL+G +GKST +E G
Sbjct: 39 VESTHSRKKELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTF---IEYFG 95
Query: 101 AGLINCDQLGHR 112
L GH+
Sbjct: 96 KMLTE---RGHK 104
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 26.7 bits (60), Expect = 5.4
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 72 LSPYPYIIGLTGGIASGKSTIAKYL-ETLGAGLINCD--QLGHRAYDVGT 118
+S P I L G A+GK+ +A L + L LI+ D + +R D+GT
Sbjct: 1 MSSLPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALI-YRGMDIGT 49
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 26.6 bits (58), Expect = 6.4
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 65 PVQPKPHLSPYPYIIGLTGGIASGKSTIAK----YLETLG 100
P P L+ P +I + G A GK+ I+K YL +G
Sbjct: 24 PRSCGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIG 63
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 26.8 bits (60), Expect = 6.4
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 18/43 (41%)
Query: 78 IIGLTGGIASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRG 120
++G TG SGKST+ LI R D RG
Sbjct: 374 VLGETG---SGKSTLMN--------LIP------RLIDP-ERG 398
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5'
exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB:
3cm5_A 3cm6_A
Length = 308
Score = 26.5 bits (58), Expect = 6.6
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 48 KLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTG 83
N ++RE + K V+P + + + TG
Sbjct: 48 AYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTG 83
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 26.6 bits (58), Expect = 6.7
Identities = 11/124 (8%), Positives = 30/124 (24%), Gaps = 12/124 (9%)
Query: 25 KPLDVVSVPLLPSDGKVDEQEEDKLSSSNLRMRELGTLRKPVQPKPHLSPYPYIIGLTGG 84
L + + + +D + N + + L + +
Sbjct: 77 DSLKTLQPNKVAEMIENQGLFKDHVEDVNFQPVKYSALTSNNE---------ECTAVVAR 127
Query: 85 IASGKSTIAKYLETLGAGLINCDQLGHRAYDVGTRGNQVVRELFGEDIALPDGSIDRKKL 144
+ + ++ + A V G + R + P + R+
Sbjct: 128 GGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRCL-DLFKDPQTAHKRR-- 184
Query: 145 GAIV 148
G+
Sbjct: 185 GSPS 188
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 26.3 bits (59), Expect = 7.0
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 73 SPYPYIIGLTGGIASGKSTIAKYL-ETLGAGLINCD--QLGHRAYDVGT 118
+ P I L G ASGK+ +A L + L LI+ D + ++ D+GT
Sbjct: 7 ASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALI-YKGMDIGT 54
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 26.1 bits (58), Expect = 7.4
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 77 YIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQL 109
++ G G +GK+T+ K L I+ D
Sbjct: 29 FLTGYMG---AGKTTLGKAFARKLNVPFIDLDWY 59
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 25.9 bits (58), Expect = 7.7
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 77 YIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQL 109
Y+IG SGKST+ L +L + D+
Sbjct: 4 YLIGFMC---SGKSTVGSLLSRSLNIPFYDVDEE 34
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann
fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella
typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Length = 180
Score = 25.9 bits (57), Expect = 8.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 78 IIGLTGGIASGKSTIAKYL 96
+I +TGG SGKS A+ L
Sbjct: 1 MILVTGGARSGKSRHAEAL 19
>1eys_H Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Length = 259
Score = 26.0 bits (57), Expect = 9.3
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 13 VKVNELRV-ANSLKPLDVVSVPLLPSDGKVDEQEEDKLS 50
+V +++K +VP L + +V EEDK+
Sbjct: 202 FDKKARKVKVDAIKAAHFANVPTLSNPDQVTLYEEDKVC 240
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 25.9 bits (57), Expect = 9.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 77 YIIGLTGGIASGKSTIAKYL-ETLGAGLINCDQL 109
Y++G+ G SGK+T+ K + +LG +CD L
Sbjct: 52 YLVGMMG---SGKTTVGKIMARSLGYTFFDCDTL 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.135 0.383
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,271,978
Number of extensions: 198135
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 110
Length of query: 212
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 123
Effective length of database: 4,216,824
Effective search space: 518669352
Effective search space used: 518669352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.4 bits)