BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1714
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F7O|A Chain A, Crystal Structure Of Csn5
pdb|4F7O|B Chain B, Crystal Structure Of Csn5
Length = 257
Score = 322 bits (825), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 161/215 (74%), Positives = 175/215 (81%), Gaps = 3/215 (1%)
Query: 146 RHQEVI---PLTLIPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMD 202
+ QE++ P T H+FK KISALALLK V HARSGG LEV GL LGK+D + I+ D
Sbjct: 35 QQQEILAAKPWTKDHHYFKYCKISALALLKXVXHARSGGNLEVXGLXLGKVDGETXIIXD 94
Query: 203 AFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVST 262
+FALPVEGTETRVNAQA AYEY AYIE AK+VGRLENAIGWYHSHPGYGCWLSGIDVST
Sbjct: 95 SFALPVEGTETRVNAQAAAYEYXAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVST 154
Query: 263 QMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDF 322
Q LNQ FQEPFVA+VIDP RTISAGKV LG+FRTYPKGYKP +E PSEYQTIPLNKIEDF
Sbjct: 155 QXLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDF 214
Query: 323 GVHCKQYYSLDVSYFKXXXXXXXXXXXWNKYWVNT 357
GVHCKQYY+L+VSYFK WNKYWVNT
Sbjct: 215 GVHCKQYYALEVSYFKSSLDRKLLELLWNKYWVNT 249
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/126 (65%), Positives = 97/126 (76%)
Query: 24 SQIAQKTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKM 83
S AQKTW + NN + + DEI+KYD+K+QQ+++AAKPW KD H+FK KISALALLK
Sbjct: 6 SGXAQKTWELANNXQEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKX 65
Query: 84 VMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAK 143
V HARSGG LEV GL LGK+D + I+ D+FALPVEGTETRVNAQA AYEY AYIE AK
Sbjct: 66 VXHARSGGNLEVXGLXLGKVDGETXIIXDSFALPVEGTETRVNAQAAAYEYXAAYIENAK 125
Query: 144 EVRHQE 149
+V E
Sbjct: 126 QVGRLE 131
>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 306
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 111/183 (60%), Gaps = 11/183 (6%)
Query: 163 IKISALALLKMVMHARSGGTLEVMGLLLGK-IDANSMIVMDAFALPVEGTETRVNAQAQA 221
+ IS++ALLKM+ H R+G +EVMGL+LG+ +D ++ V+D FA+P GT V A
Sbjct: 27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDV 86
Query: 222 YEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPV 281
++ ++ K+ GR + +GWYHSHPG+GCWLS +DV+TQ + VA+V+DP+
Sbjct: 87 FQ--AKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPI 144
Query: 282 RTISAGKVCLGSFRTYPKGYKPANEEPSEY--QTIPLNK--IEDFGVHC--KQYYSLDVS 335
+++ GKV + +FR G N EP + T LNK I+ +H + YYSL++
Sbjct: 145 QSVK-GKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQAL-IHGLNRHYYSLNID 202
Query: 336 YFK 338
Y K
Sbjct: 203 YHK 205
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 73 IKISALALLKMVMHARSGGTLEVMGLLLGK-IDANSMIVMDAFALPVEGTETRVNAQAQA 131
+ IS++ALLKM+ H R+G +EVMGL+LG+ +D ++ V+D FA+P GT V A
Sbjct: 27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDV 86
Query: 132 YE 133
++
Sbjct: 87 FQ 88
>pdb|4B4T|U Chain U, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 338
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 163 IKISALALLKMVMHARSGGTLE---VMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQA 219
+ I+ L LL + H T E +G++LG +++++ V ++FALP E E +
Sbjct: 8 VTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWF 67
Query: 220 QAYEYMTAYIEAAKEVGRLENAIGWYHSHP 249
+ Y+ E K++ E IGWYHS P
Sbjct: 68 LDHNYIENMNEMCKKINAKEKLIGWYHSGP 97
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 73 IKISALALLKMVMHARSGGTLE---VMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQA 129
+ I+ L LL + H T E +G++LG +++++ V ++FALP E E +
Sbjct: 8 VTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWF 67
Query: 130 QAYEYMTAYIEAAKEVRHQE 149
+ Y+ E K++ +E
Sbjct: 68 LDHNYIENMNEMCKKINAKE 87
>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
pdb|2O95|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
Length = 187
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 163 IKISALALLKMVMH----ARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQ 218
+ + L LL +V H + G V+G+LLG + V ++FA+P + + +
Sbjct: 10 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 69
Query: 219 AQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVI 278
++Y+ K+V E +GWYH+ P L D++ L + + V ++I
Sbjct: 70 FLDHDYLENMYGMFKKVNARERIVGWYHTGPK----LHKNDIAINELMKRYCPNSVLVII 125
Query: 279 D 279
D
Sbjct: 126 D 126
>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
pdb|2O96|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
Length = 178
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 163 IKISALALLKMVMH----ARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQ 218
+ + L LL +V H + G V+G+LLG + V ++FA+P + + +
Sbjct: 10 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 69
Query: 219 AQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVI 278
++Y+ K+V E +GWYH+ P L D++ L + + V ++I
Sbjct: 70 FLDHDYLENMYGMFKKVNARERIVGWYHTGPK----LHKNDIAINELMKRYCPNSVLVII 125
Query: 279 D 279
D
Sbjct: 126 D 126
>pdb|2ZNR|A Chain A, Crystal Structure Of The Dub Domain Of Human Amsh-Lp
Length = 178
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 26/141 (18%)
Query: 183 LEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLEN-- 240
+E G+L GK+ N + T V Q+ +Y +E +E+ +++
Sbjct: 33 IETCGILCGKLTHNEFTI----------THVIVPKQSAGPDYCD--MENVEELFNVQDQH 80
Query: 241 ---AIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDP-------VRTISAGKVC 290
+GW H+HP +LS +D+ T Q +AIV P R +AG +
Sbjct: 81 DLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLE 140
Query: 291 LGSFRTYPKGYKPANEEPSEY 311
+ + + KG+ P +EP +
Sbjct: 141 VSACKK--KGFHPHTKEPRLF 159
>pdb|2ZNV|A Chain A, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|D Chain D, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
Length = 178
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 26/137 (18%)
Query: 187 GLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLEN-----A 241
G+L GK+ N + T V Q+ +Y +E +E+ +++
Sbjct: 37 GILCGKLTHNEFTI----------THVIVPKQSAGPDYCD--MENVEELFNVQDQHDLLT 84
Query: 242 IGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDP-------VRTISAGKVCLGSF 294
+GW H+HP +LS +D+ T Q +AIV P R +AG + + +
Sbjct: 85 LGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSAC 144
Query: 295 RTYPKGYKPANEEPSEY 311
+ KG+ P +EP +
Sbjct: 145 KK--KGFHPHTKEPRLF 159
>pdb|3RZU|A Chain A, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|B Chain B, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|C Chain C, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|D Chain D, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|E Chain E, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|F Chain F, The Crystal Structure Of The Catalytic Domain Of Amsh
pdb|3RZU|G Chain G, The Crystal Structure Of The Catalytic Domain Of Amsh
Length = 187
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 39/185 (21%)
Query: 139 IEAAKEVRHQEVIPLTLIPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSM 198
I +RH V+P L P F + + A + +E G+L GK+ N
Sbjct: 11 IPTIDGLRHV-VVPGRLCPQFLQ------------LASANTARGVETCGILCGKLMRNEF 57
Query: 199 IVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLEN-----AIGWYHSHPGYGC 253
+ T + Q+ +Y E +E+ +++ +GW H+HP
Sbjct: 58 TI----------THVLIPKQSAGSDYCNT--ENEEELFLIQDQQGLITLGWIHTHPTQTA 105
Query: 254 WLSGIDVSTQMLNQNFQEPFVAIVIDP-------VRTISAGKVCLGSFRTYPKGYKPANE 306
+LS +D+ T Q VAIV P + G + S R KG+ P ++
Sbjct: 106 FLSSVDLHTHCSYQMMLPESVAIVCSPKFQETGFFKLTDHGLEEISSCRQ--KGFHPHSK 163
Query: 307 EPSEY 311
+P +
Sbjct: 164 DPPLF 168
>pdb|3RZV|A Chain A, The Crystal Structure Of A E280a Mutant Of The Catalytic
Domain Of Amsh
Length = 211
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 70/185 (37%), Gaps = 39/185 (21%)
Query: 139 IEAAKEVRHQEVIPLTLIPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSM 198
I +RH V+P L P F + + A + + G+L GK+ N
Sbjct: 35 IPTIDGLRHV-VVPGRLCPQFLQ------------LASANTARGVATCGILCGKLMRNEF 81
Query: 199 IVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLEN-----AIGWYHSHPGYGC 253
+ T + Q+ +Y E +E+ +++ +GW H+HP
Sbjct: 82 TI----------THVLIPKQSAGSDYCNT--ENEEELFLIQDQQGLITLGWIHTHPTQTA 129
Query: 254 WLSGIDVSTQMLNQNFQEPFVAIVIDP-------VRTISAGKVCLGSFRTYPKGYKPANE 306
+LS +D+ T Q VAIV P + G + S R KG+ P ++
Sbjct: 130 FLSSVDLHTHCSYQMMLPESVAIVCSPKFQETGFFKLTDHGLEEISSCRQ--KGFHPHSK 187
Query: 307 EPSEY 311
+P +
Sbjct: 188 DPPLF 192
>pdb|2FM8|A Chain A, Crystal Structure Of The Salmonella Secretion Chaperone
Invb In Complex With Sipa
pdb|2FM8|B Chain B, Crystal Structure Of The Salmonella Secretion Chaperone
Invb In Complex With Sipa
Length = 135
Score = 32.7 bits (73), Expect = 0.40, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 18/77 (23%)
Query: 93 LEVMGL---LLGKIDANSMIVMDAFALPV---------------EGTETRVNAQAQAYEY 134
LEV G L+G ID++S IV+D FALP G ++ V Q +AYE
Sbjct: 14 LEVSGCDPSLIGGIDSHSTIVLDLFALPSICISVKDDDVWIWAQLGADSMVVLQQRAYEI 73
Query: 135 MTAYIEAAKEVRHQEVI 151
+ +E R +++
Sbjct: 74 LMTIMEGCHFARGGQLL 90
Score = 32.3 bits (72), Expect = 0.59, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 18/67 (26%)
Query: 183 LEVMGL---LLGKIDANSMIVMDAFALPV---------------EGTETRVNAQAQAYEY 224
LEV G L+G ID++S IV+D FALP G ++ V Q +AYE
Sbjct: 14 LEVSGCDPSLIGGIDSHSTIVLDLFALPSICISVKDDDVWIWAQLGADSMVVLQQRAYEI 73
Query: 225 MTAYIEA 231
+ +E
Sbjct: 74 LMTIMEG 80
>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5I|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5K|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5M|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
Length = 1193
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 10/125 (8%)
Query: 29 KTWIMENNIETLSATDEIFKYDRKRQQDMIAAKP--WEKDPHFFKDIKISALALLKMVMH 86
KT I+EN S+ D F R++ ++A + KD H K +A AL + MH
Sbjct: 763 KTLILENKTNKRSSED--FVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALFNLEMH 820
Query: 87 ARSGGTLEVMGLLLGKID----ANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAA 142
S + + + L + +N V+D + G +T + Y + Y++A
Sbjct: 821 VLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTF--SEKGYAILMKYVKAH 878
Query: 143 KEVRH 147
+H
Sbjct: 879 LNSKH 883
>pdb|1G0S|A Chain A, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G0S|B Chain B, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G9Q|A Chain A, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1G9Q|B Chain B, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1GA7|A Chain A, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1GA7|B Chain B, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1KHZ|A Chain A, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
pdb|1KHZ|B Chain B, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
Length = 209
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 177 ARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVG 236
A GGT E +++G++DA + + A E V ++ QAY+++ E G
Sbjct: 132 ASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWV--------EEG 183
Query: 237 RLENA 241
+++NA
Sbjct: 184 KIDNA 188
>pdb|1VIQ|A Chain A, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIQ|B Chain B, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIQ|C Chain C, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
Length = 220
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 177 ARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVG 236
A GGT E +++G++DA + + A E V ++ QAY+++ E G
Sbjct: 133 ASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWV--------EEG 184
Query: 237 RLENA 241
+++NA
Sbjct: 185 KIDNA 189
>pdb|3TEB|A Chain A, EndonucleaseEXONUCLEASEPHOSPHATASE FAMILY PROTEIN FROM
LEPTOTRICHIA Buccalis C-1013-B
pdb|3TEB|B Chain B, EndonucleaseEXONUCLEASEPHOSPHATASE FAMILY PROTEIN FROM
LEPTOTRICHIA Buccalis C-1013-B
Length = 266
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 244 WYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKV 289
W +SH G+G + G+ V T+ + ++ F VRTISA ++
Sbjct: 81 WSNSHIGFGKYNEGVAVITRHKIK-AEDEFYCTFAQSVRTISARRI 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,446,844
Number of Sequences: 62578
Number of extensions: 437673
Number of successful extensions: 1095
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1077
Number of HSP's gapped (non-prelim): 23
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)