Query psy1714
Match_columns 449
No_of_seqs 354 out of 1166
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 22:56:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_V 26S proteasome regulato 100.0 1E-52 3.4E-57 420.4 15.3 267 157-433 21-296 (306)
2 2o95_A 26S proteasome non-ATPa 100.0 3.8E-30 1.3E-34 239.2 18.9 171 158-352 5-179 (187)
3 2znr_A AMSH-like protease; met 99.9 5.9E-28 2E-32 224.4 8.2 133 158-303 6-140 (178)
4 4e0q_A COP9 signalosome comple 99.9 2.7E-27 9.3E-32 212.4 9.6 130 159-296 4-138 (141)
5 3rzv_A STAM-binding protein; u 99.9 1.4E-25 4.7E-30 213.7 11.5 131 159-302 40-172 (211)
6 4b4t_U RPN8, 26S proteasome re 99.9 1E-22 3.4E-27 206.0 22.8 201 160-386 5-209 (338)
7 2kcq_A MOV34/MPN/PAD-1 family; 99.9 2.7E-23 9.3E-28 187.6 10.3 122 163-298 1-127 (153)
8 2kks_A Uncharacterized protein 99.9 1.5E-22 5.1E-27 181.4 13.9 124 163-298 2-125 (146)
9 1oi0_A AF2198, hypothetical pr 99.8 8.8E-19 3E-23 152.9 8.9 109 162-296 3-111 (124)
10 4b4t_V 26S proteasome regulato 99.7 6E-19 2E-23 176.3 6.2 115 53-169 4-122 (306)
11 4e0q_A COP9 signalosome comple 99.3 4.9E-13 1.7E-17 119.8 4.9 85 71-158 6-95 (141)
12 2o95_A 26S proteasome non-ATPa 99.3 2.1E-12 7.2E-17 119.6 4.9 90 69-158 6-99 (187)
13 2og4_A PRE-mRNA-splicing facto 99.2 2.5E-11 8.7E-16 117.8 7.4 128 160-302 37-170 (254)
14 2p8r_A PRP8, PRE-mRNA-splicing 99.1 1.9E-10 6.4E-15 112.8 8.7 126 160-302 38-173 (273)
15 3rzv_A STAM-binding protein; u 98.6 1.4E-08 4.7E-13 96.7 3.5 77 69-153 40-120 (211)
16 2znr_A AMSH-like protease; met 98.6 1.8E-08 6.1E-13 93.4 4.0 91 70-169 8-102 (178)
17 4b4t_U RPN8, 26S proteasome re 98.4 2E-07 6.9E-12 94.1 4.8 87 70-156 5-94 (338)
18 3sbg_A PRE-mRNA-splicing facto 98.3 7.5E-07 2.6E-11 93.5 8.1 130 160-302 348-481 (565)
19 2kks_A Uncharacterized protein 98.2 1.9E-06 6.6E-11 76.6 6.6 52 73-124 2-54 (146)
20 2kcq_A MOV34/MPN/PAD-1 family; 98.1 2E-06 7E-11 77.0 4.6 54 73-126 1-58 (153)
21 1oi0_A AF2198, hypothetical pr 97.6 3.1E-05 1.1E-09 66.9 3.3 46 72-121 3-48 (124)
22 2qlc_A DNA repair protein RADC 78.2 14 0.00049 31.8 9.7 26 237-262 66-91 (126)
No 1
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-52 Score=420.43 Aligned_cols=267 Identities=30% Similarity=0.508 Sum_probs=204.0
Q ss_pred CCCceeEEECHHHHHHHHHHHhcCCCceeEEEEeeee-cCCeEEEEEEEeCCccCCCCcccccccHHHHHHHHHHHHHHh
Q psy1714 157 PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKI-DANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEV 235 (449)
Q Consensus 157 p~~~~~V~Is~~vLlkIl~Ha~~~~p~EVmGLLLG~~-d~~tl~Vtd~F~lP~~~tetrv~a~~e~~ey~~~mlellrkv 235 (449)
++++++|+|+++||++|++||+++.|.||||+|+|.+ ++.+++|++|||+|+.++++++++. +.+|+.+|+++++++
T Consensus 21 ~~~~~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~--d~~y~~~m~~~~~~v 98 (306)
T 4b4t_V 21 DDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAV--DDVFQAKMMDMLKQT 98 (306)
T ss_dssp CSSCCEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECC--CHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcC--CHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999985 5568999999999999999998765 346899999999999
Q ss_pred CCCCceEEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCcCCCeeEEEEEEEccCCCCCCCCCCC----cc
Q psy1714 236 GRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPS----EY 311 (449)
Q Consensus 236 gr~e~VVGWYHSHP~~~~~pS~iDI~tQ~~yQ~~~~p~VaLIvDP~~t~~~Gkv~IkAFRl~p~~y~~~~~~~~----e~ 311 (449)
|+++++||||||||+++||||++||+||..||.+.+++|+|||||.++. +|++.|+|||++|.++.+...+++ .+
T Consensus 99 ~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~-~G~~~i~Afr~~~~~~~~~~~~~~~~~s~~ 177 (306)
T 4b4t_V 99 GRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSV-KGKVVIDAFRLIDTGALINNLEPRQTTSNT 177 (306)
T ss_dssp SCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSS-SCSSCEEEEECCHHHHHHCCCCCSCC----
T ss_pred CCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCC-CCceeeeEEEecCccccccccCcccccccc
Confidence 9999999999999999999999999999999999999999999999986 799999999999977665444443 34
Q ss_pred ccccchhhhccccc-cceEEeeeeEEeeCHHHHHHHHHhhhhhhHhhhccCcccccHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1714 312 QTIPLNKIEDFGVH-CKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVR 390 (449)
Q Consensus 312 ~siPl~ki~~~g~~-~~~yy~L~V~~~~S~ld~~~L~~L~~~~W~~~Ls~s~l~~n~~~~~~~i~dl~~~~~~~~~~~~~ 390 (449)
+.+|..++++++.+ +++||+|+|+|+++++|+++|+.||+++|..+|+++++.++.++..+++.++.+..++....+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~~~~~~i~~m~~~~~~y~k~v~~ 257 (306)
T 4b4t_V 178 GLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAATKSMVKIAEQYSKRIEE 257 (306)
T ss_dssp ------------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred cccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55677778888765 46799999999999999999999999999999999999999999999998887766655444321
Q ss_pred cccccccccCCchhhhHH--H-hhhhhHHHHHHHHhHHHHHHHHHH
Q psy1714 391 NFLISESQERRPETKLMK--A-TKDCCKTTIECIHGLMAQMIKQQL 433 (449)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~e~~~~~~~~~~k~~~ 433 (449)
. .+..++++.. + ..|++|...|....||...|++.|
T Consensus 258 e-------~~~~~~~l~~~~vgk~dp~~~l~~~~~~l~~~ni~~~l 296 (306)
T 4b4t_V 258 E-------KELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVL 296 (306)
T ss_dssp H-------HHHHHHHHHHTCSCSSCCSSSSHHHHHHHHHHHHHHHH
T ss_pred c-------ccCCHHHHHhhccCccChHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112233322 1 358888988999999999988876
No 2
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.97 E-value=3.8e-30 Score=239.19 Aligned_cols=171 Identities=19% Similarity=0.288 Sum_probs=143.5
Q ss_pred CCceeEEECHHHHHHHHHHHhc----CCCceeEEEEeeeecCCeEEEEEEEeCCccCCCCcccccccHHHHHHHHHHHHH
Q psy1714 158 HFFKDIKISALALLKMVMHARS----GGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAK 233 (449)
Q Consensus 158 ~~~~~V~Is~~vLlkIl~Ha~~----~~p~EVmGLLLG~~d~~tl~Vtd~F~lP~~~tetrv~a~~e~~ey~~~mlellr 233 (449)
.++.+|+|+++|+++|++||.+ +.+.||||+|||..++++++|+||||+|+.+++.+.+.+..+.+|+..|+++++
T Consensus 5 ~~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~~ 84 (187)
T 2o95_A 5 LAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFK 84 (187)
T ss_dssp CSCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHHH
T ss_pred CCCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHHH
Confidence 4678999999999999999854 489999999999999899999999999998776643333335689999999999
Q ss_pred HhCCCCceEEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCcCCCeeEEEEEEEccCCCCCCCCCCCcccc
Q psy1714 234 EVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQT 313 (449)
Q Consensus 234 kvgr~e~VVGWYHSHP~~~~~pS~iDI~tQ~~yQ~~~~p~VaLIvDP~~t~~~Gkv~IkAFRl~p~~y~~~~~~~~e~~s 313 (449)
++++++++||||||||++ |..|+.+|..||.+.+++++||+||.++. +.+.++||++.+....+..
T Consensus 85 ~v~~~~~iVGWY~s~~~~----s~~d~~i~~~~~~~~~~~v~Livd~~~~~--~~l~i~ay~~~~~~~~~~~-------- 150 (187)
T 2o95_A 85 KVNARERIVGWYHTGPKL----HKNDIAINELMKRYCPNSVLVIIDVKPKD--LGLPTEAYISVEEVHDDGT-------- 150 (187)
T ss_dssp TTSSSCEEEEEEECCSSC----CTTHHHHHHHHTTTCTTCEEEEECCCTTC---CCSEEEEEEEEECC------------
T ss_pred HhCCCCCEEEEEcCCCcC----CcccHHHHHHHHhcCCCCEEEEECCCCCC--CCcCeEEEEEechhcCCCC--------
Confidence 999999999999999986 66888888899999999999999998752 3489999999986543210
Q ss_pred ccchhhhccccccceEEeeeeEEeeCHHHHHHHHHhhhh
Q psy1714 314 IPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNK 352 (449)
Q Consensus 314 iPl~ki~~~g~~~~~yy~L~V~~~~S~ld~~~L~~L~~~ 352 (449)
+ ....|.++|+++..++.|+..++.|.+.
T Consensus 151 -~---------~~~~F~~ip~~I~~~eaE~i~v~~l~~~ 179 (187)
T 2o95_A 151 -P---------TSKTFEHVTSEIGAEEAEEVGVEHLLRD 179 (187)
T ss_dssp -C---------CEEEEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred -c---------ccCEEEEeeEEEecCcHHHHHHHHHHhc
Confidence 0 1467999999999999999999998653
No 3
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.94 E-value=5.9e-28 Score=224.41 Aligned_cols=133 Identities=21% Similarity=0.296 Sum_probs=113.4
Q ss_pred CCceeEEECHHHHHHHHHHHhcCC--CceeEEEEeeeecCCeEEEEEEEeCCccCCCCcccccccHHHHHHHHHHHHHHh
Q psy1714 158 HFFKDIKISALALLKMVMHARSGG--TLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEV 235 (449)
Q Consensus 158 ~~~~~V~Is~~vLlkIl~Ha~~~~--p~EVmGLLLG~~d~~tl~Vtd~F~lP~~~tetrv~a~~e~~ey~~~mlellrkv 235 (449)
.+++.|.|++.++.+|+.||+.+. +.||||+|+|+..++..+|+++|++|+.++++++++..+. + + ++.++
T Consensus 6 ~~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~-e-~---~~~~~-- 78 (178)
T 2znr_A 6 EGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVE-E-L---FNVQD-- 78 (178)
T ss_dssp CSCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHH-H-H---HHHHH--
T ss_pred CCcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHH-H-H---HHHHH--
Confidence 358899999999999999999764 4799999999998889999999999999888887654322 2 1 22333
Q ss_pred CCCCceEEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCcCCCeeEEEEEEEccCCCCC
Q psy1714 236 GRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKP 303 (449)
Q Consensus 236 gr~e~VVGWYHSHP~~~~~pS~iDI~tQ~~yQ~~~~p~VaLIvDP~~t~~~Gkv~IkAFRl~p~~y~~ 303 (449)
++++.+||||||||+++||||.+|+++|..||.+.+++++||+||..+ .++|||++|.++..
T Consensus 79 ~~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~------~~~afrl~~~g~~~ 140 (178)
T 2znr_A 79 QHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK------DTGIFRLTNAGMLE 140 (178)
T ss_dssp HHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT------EEEEEEECHHHHHH
T ss_pred hCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC------cceEEEEECCcEee
Confidence 367999999999999999999999999999999999999999999763 38999999977654
No 4
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.94 E-value=2.7e-27 Score=212.44 Aligned_cols=130 Identities=19% Similarity=0.298 Sum_probs=107.6
Q ss_pred CceeEEECHHHHHHHHHHHhc-----CCCceeEEEEeeeecCCeEEEEEEEeCCccCCCCcccccccHHHHHHHHHHHHH
Q psy1714 159 FFKDIKISALALLKMVMHARS-----GGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAK 233 (449)
Q Consensus 159 ~~~~V~Is~~vLlkIl~Ha~~-----~~p~EVmGLLLG~~d~~tl~Vtd~F~lP~~~tetrv~a~~e~~ey~~~mlellr 233 (449)
...+|.|+|+||++|++||.+ +.+.+|+|+|||..++++++|+|||++|++++++++. .+.+|+.+|+++++
T Consensus 4 ~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~~---~d~~y~~~m~~~~k 80 (141)
T 4e0q_A 4 MSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETV---INKDYYNKKEQQYK 80 (141)
T ss_dssp -CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEEE---ECHHHHHHHHHHHH
T ss_pred CcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCcee---ecHHHHHHHHHHHH
Confidence 346899999999999999954 3578999999999999999999999999988777652 24689999999999
Q ss_pred HhCCCCceEEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCcCCCeeEEEEEEE
Q psy1714 234 EVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRT 296 (449)
Q Consensus 234 kvgr~e~VVGWYHSHP~~~~~pS~iDI~tQ~~yQ~~~~p~VaLIvDP~~t~~~Gkv~IkAFRl 296 (449)
++++++++||||||||. ++..|+..|..|++..+.+|+|++||..+. .|++.++||+.
T Consensus 81 ~v~~~e~iVGWY~s~~~----~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~-~g~Lp~~ay~s 138 (141)
T 4e0q_A 81 QVFSDLDFIGWYTTGDN----PTADDIKIQRQIAAINECPIMLQLNPLSRS-VDHLPLKLFES 138 (141)
T ss_dssp HHSTTCEEEEEEEEEC-----------CHHHHHHHTTCCCEEEEESCSCCC-CTTHHHHHHCC
T ss_pred HhCCCccEEEEEeCCCC----CCcchHHHHHHHHHHCCCCEEEEECCCccC-CCeEEEEEEEE
Confidence 99999999999999994 677888888899999999999999999864 67788888864
No 5
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.92 E-value=1.4e-25 Score=213.66 Aligned_cols=131 Identities=20% Similarity=0.295 Sum_probs=112.8
Q ss_pred CceeEEECHHHHHHHHHHHhcC--CCceeEEEEeeeecCCeEEEEEEEeCCccCCCCcccccccHHHHHHHHHHHHHHhC
Q psy1714 159 FFKDIKISALALLKMVMHARSG--GTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVG 236 (449)
Q Consensus 159 ~~~~V~Is~~vLlkIl~Ha~~~--~p~EVmGLLLG~~d~~tl~Vtd~F~lP~~~tetrv~a~~e~~ey~~~mlellrkvg 236 (449)
.+++|.|++.++.+|+.||+.+ .+.||||+|+|+..+++++|+++|..|+.++++++++..+. + +.+ ..++
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~-e-~~~---~~~~-- 112 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEE-E-LFL---IQDQ-- 112 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHH-H-HHH---HHHH--
T ss_pred ccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChH-H-HHH---HHhh--
Confidence 5689999999999999999986 45899999999998899999999999999998888754322 2 112 2222
Q ss_pred CCCceEEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCcCCCeeEEEEEEEccCCCC
Q psy1714 237 RLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYK 302 (449)
Q Consensus 237 r~e~VVGWYHSHP~~~~~pS~iDI~tQ~~yQ~~~~p~VaLIvDP~~t~~~Gkv~IkAFRl~p~~y~ 302 (449)
+++.+||||||||+++||||.+|+.+|..||.+.+++|+|||||..+ +++|||++|+|+.
T Consensus 113 ~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~------~lgaFrLtp~G~~ 172 (211)
T 3rzv_A 113 QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ------ETGFFKLTDHGLE 172 (211)
T ss_dssp HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT------EEEEEEECHHHHH
T ss_pred CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC------eeeEEEeccchhh
Confidence 57999999999999999999999999999999999999999999752 6999999998764
No 6
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1e-22 Score=206.05 Aligned_cols=201 Identities=18% Similarity=0.294 Sum_probs=152.2
Q ss_pred ceeEEECHHHHHHHHHHHh---cCCCceeEEEEeeeecCCeEEEEEEEeCCccCCCCcccccccHHHHHHHHHHHHHHhC
Q psy1714 160 FKDIKISALALLKMVMHAR---SGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVG 236 (449)
Q Consensus 160 ~~~V~Is~~vLlkIl~Ha~---~~~p~EVmGLLLG~~d~~tl~Vtd~F~lP~~~tetrv~a~~e~~ey~~~mlellrkvg 236 (449)
.++|.|+|+||++|++|+. .+.+.+|+|.|||..++++++|++||++|+..+++....+..+.+|+..|++++++++
T Consensus 5 ~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~ 84 (338)
T 4b4t_U 5 HEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKIN 84 (338)
T ss_dssp CSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHC
T ss_pred CCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcC
Confidence 4689999999999999984 3567799999999999999999999999997776655444446789999999999999
Q ss_pred CCCceEEEEecCCCCCCcccHhhHHhHHhhhccC-CCeEEEEEcCCCCcCCCeeEEEEEEEccCCCCCCCCCCCcccccc
Q psy1714 237 RLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQ-EPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIP 315 (449)
Q Consensus 237 r~e~VVGWYHSHP~~~~~pS~iDI~tQ~~yQ~~~-~p~VaLIvDP~~t~~~Gkv~IkAFRl~p~~y~~~~~~~~e~~siP 315 (449)
+++.+||||||+|. ++..|+..|..|++.. ++.+++++|+.. ..+++.++||+..+...... . +
T Consensus 85 ~~e~iVGWY~tg~~----~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~--~~~~lpi~aY~s~~~~~~~~-------~--~ 149 (338)
T 4b4t_U 85 AKEKLIGWYHSGPK----LRASDLKINELFKKYTQNNPLLLIVDVKQ--QGVGLPTDAYVAIEQVKDDG-------T--S 149 (338)
T ss_dssp CSCEEEEEEECCSS----CCSTHHHHHHHHGGGCCSCCCEEEECSCC--CSSSCSEEEEEEEEECSSCS-------T--T
T ss_pred ccCCEEEEEecCCC----CCccHHHHHHHHHhccCCCcEEEEecCCC--CCCCcceEEEEeehhccCCC-------c--c
Confidence 99999999999985 4556777788888876 467889999875 36788999999877432110 0 0
Q ss_pred chhhhccccccceEEeeeeEEeeCHHHHHHHHHhhhhhhHhhhccCcccccHHHHHHHHHHHHHHHHHHHH
Q psy1714 316 LNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAES 386 (449)
Q Consensus 316 l~ki~~~g~~~~~yy~L~V~~~~S~ld~~~L~~L~~~~W~~~Ls~s~l~~n~~~~~~~i~dl~~~~~~~~~ 386 (449)
....|.++|+++...+.|+..++.+.+..... +...+..+.......+..|..+++.+..
T Consensus 150 ---------~~~~F~~lp~~i~~~eaE~Igv~~l~r~~~~~--~~~~l~~~l~~~~~al~~L~~~l~~i~~ 209 (338)
T 4b4t_U 150 ---------TEKTFLHLPCTIEAEEAEEIGVEHLLRDVRDQ--AAGGLSIRLTNQLKSLKGLQSKLKDVVE 209 (338)
T ss_dssp ---------CEEEEEEECEEECSCHHHHHHHHHHHHHHSSC--C---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cccEEEEeeeEeecCcHHHHHHHHHHhccccC--cccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 13569999999999999999999987643221 1122333444445555666666655554
No 7
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=99.89 E-value=2.7e-23 Score=187.58 Aligned_cols=122 Identities=22% Similarity=0.247 Sum_probs=97.2
Q ss_pred EEECHHHHHHHHHHHhcCCCceeEEEEeeeec-CCeEEEEEEEeCCcc--CC-CCcccccccHHHHHHHHHHHHHHhCCC
Q psy1714 163 IKISALALLKMVMHARSGGTLEVMGLLLGKID-ANSMIVMDAFALPVE--GT-ETRVNAQAQAYEYMTAYIEAAKEVGRL 238 (449)
Q Consensus 163 V~Is~~vLlkIl~Ha~~~~p~EVmGLLLG~~d-~~tl~Vtd~F~lP~~--~t-etrv~a~~e~~ey~~~mlellrkvgr~ 238 (449)
+.|++.++.+|+.||+.+.|.|+||+|+|+.+ ++++.|+++|++|+. .+ .+++.. ++.+ +.++.+.+++ ++
T Consensus 1 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~--dp~~-~~~~~~~~~~--~g 75 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYEL--TADD-YRAADAAAQE--QG 75 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSC--CCCS-HHHHHHHHHH--HT
T ss_pred CEeCHHHHHHHHHHHHhcCCcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEE--CHHH-HHHHHHHHHH--CC
Confidence 35889999999999999999999999999987 788999999999986 32 333332 2223 3445566665 46
Q ss_pred CceEEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCcCCCe-eEEEEEEEcc
Q psy1714 239 ENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGK-VCLGSFRTYP 298 (449)
Q Consensus 239 e~VVGWYHSHP~~~~~pS~iDI~tQ~~yQ~~~~p~VaLIvDP~~t~~~Gk-v~IkAFRl~p 298 (449)
+.+||||||||+++||||.+|+.++ ..++++++|+++. .|+ ..++|||+..
T Consensus 76 ~~ivG~yHSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~----~~~~~~~~af~~~~ 127 (153)
T 2kcq_A 76 LDVVGVYHSHPDHPARPSATDLEEA-----TFPGFTYVIVSVR----DGAPEALTAWALAP 127 (153)
T ss_dssp CEEEEEEEECSSSSSSCCHHHHHTC-----CCTTSEEEEEEEE----TTEEEEEEEEEECT
T ss_pred CeEEEEEeCCCCCCCCCCHHHHHhh-----hcCCCeEEEEECC----CCCccEEEEEEEeC
Confidence 9999999999999999999999753 3578999999975 355 4799999954
No 8
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.88 E-value=1.5e-22 Score=181.42 Aligned_cols=124 Identities=21% Similarity=0.226 Sum_probs=100.6
Q ss_pred EEECHHHHHHHHHHHhcCCCceeEEEEeeeecCCeEEEEEEEeCCccCCCCcccccccHHHHHHHHHHHHHHhCCCCceE
Q psy1714 163 IKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAI 242 (449)
Q Consensus 163 V~Is~~vLlkIl~Ha~~~~p~EVmGLLLG~~d~~tl~Vtd~F~lP~~~tetrv~a~~e~~ey~~~mlellrkvgr~e~VV 242 (449)
|.|+..++.+|+.||+.+.|.|+||+|+|+.++++..|+++|++|+....... +..++.+ +.++.+.+++ +++.+|
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~~-f~~dp~~-~~~~~~~~~~--~g~~iv 77 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEH-FSMDPRE-QLTAVKDMRK--NGWVML 77 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSS-CCCCHHH-HHHHHHHHHH--HTCEEE
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCcEEEEEEECCCcCCCCce-EEECHHH-HHHHHHHHHH--CCCEEE
Confidence 78999999999999999999999999999998888999999999986544321 2233444 4555666665 468999
Q ss_pred EEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCcCCCeeEEEEEEEcc
Q psy1714 243 GWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYP 298 (449)
Q Consensus 243 GWYHSHP~~~~~pS~iDI~tQ~~yQ~~~~p~VaLIvDP~~t~~~Gkv~IkAFRl~p 298 (449)
|||||||+++|+||.+|+.++ ..++++++|+++.. .+...++|||+..
T Consensus 78 G~~HSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~~---~~~~~~~af~~~~ 125 (146)
T 2kks_A 78 GNFHSHPATPARPSAEDKRLA-----FDPSLSYLIISLAE---PQKPVCKSFLIKK 125 (146)
T ss_dssp EEEEEESSSCSSCCHHHHTTC-----CSSSCEEEEEECSC---SSSCEEEEEEECS
T ss_pred EEEeCCCcCCCCCCHHHHHhh-----hcCCCeEEEEEccC---CCceEEEEEEEeC
Confidence 999999999999999999864 34788999999863 3457899999944
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=99.76 E-value=8.8e-19 Score=152.86 Aligned_cols=109 Identities=21% Similarity=0.169 Sum_probs=81.1
Q ss_pred eEEECHHHHHHHHHHHhcCCCceeEEEEeeeecCCeEEEEEEEeCCccCCCCcccccccHHHHHHHHHHHHHHhCCCCce
Q psy1714 162 DIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENA 241 (449)
Q Consensus 162 ~V~Is~~vLlkIl~Ha~~~~p~EVmGLLLG~~d~~tl~Vtd~F~lP~~~tetrv~a~~e~~ey~~~mlellrkvgr~e~V 241 (449)
.|.|+..++.+|++||+++.|.|+||+|+|+.. .|+++|++|+.+++.+. .|...| . .+++.+
T Consensus 3 ~v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~~----~v~~~~~~p~~~~~~~~-------~f~~~~----~--~~~~~i 65 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSAHPDEFIALLSGSKD----VMDELIFLPFVSGSVSA-------VIHLDM----L--PIGMKV 65 (124)
T ss_dssp SCEECHHHHHHHHHHHHHHTTSCCEEEEEESTT----EECEEEECCCCC--------------------------CCCEE
T ss_pred EEEEcHHHHHHHHHHHHhcCCCeeEEEEecccC----EEEEEEECCCCCCCcCc-------eeeeee----c--cCCCEE
Confidence 578999999999999999999999999999863 78899999954332211 121111 1 267999
Q ss_pred EEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCcCCCeeEEEEEEE
Q psy1714 242 IGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRT 296 (449)
Q Consensus 242 VGWYHSHP~~~~~pS~iDI~tQ~~yQ~~~~p~VaLIvDP~~t~~~Gkv~IkAFRl 296 (449)
||||||||+++|+||.+|+.++. .++.+++|+++.. +...+++|+.
T Consensus 66 vG~~HSHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~~----~~~~~~~f~~ 111 (124)
T 1oi0_A 66 FGTVHSHPSPSCRPSEEDLSLFT-----RFGKYHIIVCYPY----DENSWKCYNR 111 (124)
T ss_dssp EEEEEEESSSCCSCCHHHHHHHH-----HSCSEEEEEETTC----CTTCEEEEET
T ss_pred EEEEEECcCCCCccCHHHHHhhh-----cCCCEEEEEEccC----CCceEEEEec
Confidence 99999999999999999998753 3678999999643 2235677764
No 10
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=6e-19 Score=176.35 Aligned_cols=115 Identities=30% Similarity=0.405 Sum_probs=86.8
Q ss_pred HHHHHHHcCCCCCCC---CccceeeehHHHHHHHHHhhhcCCCeeEEeeecccc-cCCceeEeeccccccCCcccccchh
Q psy1714 53 RQQDMIAAKPWEKDP---HFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKI-DANSMIVMDAFALPVEGTETRVNAQ 128 (449)
Q Consensus 53 ~~~~~~~~~pw~~~p---~~f~~v~is~~a~~km~~ha~~g~~~evmg~~~g~~-~~~~~~v~d~~~lpv~g~e~~vna~ 128 (449)
.|+-+.+.+||..|| +.+++|+||+||||||+.||++|++.||||+|+|++ ++.++.|+|||++|++|+++|||+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~ 83 (306)
T 4b4t_V 4 LQRLMMNSKVGSADTGRDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAV 83 (306)
T ss_dssp -------------CCCCCSSCCEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECC
T ss_pred HHHhhhccCCCCCCCCCCCCCCEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcC
Confidence 345557778888876 579999999999999999999999999999999986 4557999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcccccccccccccCCCCceeEEECHHH
Q psy1714 129 AQAYEYMTAYIEAAKEVRHQEVIPLTLIPHFFKDIKISALA 169 (449)
Q Consensus 129 ~~~~~~m~~~~~~~~~vr~~e~i~w~~~p~~~~~V~Is~~v 169 (449)
++. |+.++++..+++++.+++.-|+..++--.+.++..-
T Consensus 84 d~~--y~~~m~~~~~~v~~~~~vVGWYhShP~~~~~~S~~D 122 (306)
T 4b4t_V 84 DDV--FQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVD 122 (306)
T ss_dssp CHH--HHHHHHHHHHHHSCCCCCSEEEEECCSSSCCCCHHH
T ss_pred CHH--HHHHHHHHHHHhCCCcceeeEEecCCCCCCcCCHHH
Confidence 885 788899999999888888877775543334444433
No 11
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.34 E-value=4.9e-13 Score=119.76 Aligned_cols=85 Identities=18% Similarity=0.224 Sum_probs=72.9
Q ss_pred ceeeehHHHHHHHHHhhhc-----CCCeeEEeeecccccCCceeEeeccccccCCcccccchhhhHHHHHHHHHHHhccc
Q psy1714 71 KDIKISALALLKMVMHARS-----GGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEV 145 (449)
Q Consensus 71 ~~v~is~~a~~km~~ha~~-----g~~~evmg~~~g~~~~~~~~v~d~~~lpv~g~e~~vna~~~~~~~m~~~~~~~~~v 145 (449)
.+|+|++|+|+||+.|+.| |++.+|||+|+|+..+++|.|+|+|++|.+++|+++... .+|+.+.++..+++
T Consensus 6 ~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~~~d---~~y~~~m~~~~k~v 82 (141)
T 4e0q_A 6 VTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVIN---KDYYNKKEQQYKQV 82 (141)
T ss_dssp EEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEEEEC---HHHHHHHHHHHHHH
T ss_pred EEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCceeec---HHHHHHHHHHHHHh
Confidence 5799999999999999955 679999999999999999999999999999999887333 58999999999999
Q ss_pred ccccccccccCCC
Q psy1714 146 RHQEVIPLTLIPH 158 (449)
Q Consensus 146 r~~e~i~w~~~p~ 158 (449)
.+.|++.-|+...
T Consensus 83 ~~~e~iVGWY~s~ 95 (141)
T 4e0q_A 83 FSDLDFIGWYTTG 95 (141)
T ss_dssp STTCEEEEEEEEE
T ss_pred CCCccEEEEEeCC
Confidence 8777776666543
No 12
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.27 E-value=2.1e-12 Score=119.62 Aligned_cols=90 Identities=22% Similarity=0.299 Sum_probs=76.1
Q ss_pred ccceeeehHHHHHHHHHhhhc----CCCeeEEeeecccccCCceeEeeccccccCCcccccchhhhHHHHHHHHHHHhcc
Q psy1714 69 FFKDIKISALALLKMVMHARS----GGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKE 144 (449)
Q Consensus 69 ~f~~v~is~~a~~km~~ha~~----g~~~evmg~~~g~~~~~~~~v~d~~~lpv~g~e~~vna~~~~~~~m~~~~~~~~~ 144 (449)
-.++|+|+++|++||+.|+.+ |++.||||+|+|+..++.+.|+|+|++|.++++.++|...-..||+.+.++..++
T Consensus 6 ~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~~~ 85 (187)
T 2o95_A 6 AVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKK 85 (187)
T ss_dssp SCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHHHT
T ss_pred CCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHHHH
Confidence 357999999999999999854 7999999999999999999999999999999888654433335799999999999
Q ss_pred cccccccccccCCC
Q psy1714 145 VRHQEVIPLTLIPH 158 (449)
Q Consensus 145 vr~~e~i~w~~~p~ 158 (449)
+.+.+++.-|+..+
T Consensus 86 v~~~~~iVGWY~s~ 99 (187)
T 2o95_A 86 VNARERIVGWYHTG 99 (187)
T ss_dssp TSSSCEEEEEEECC
T ss_pred hCCCCCEEEEEcCC
Confidence 98777776666644
No 13
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=99.18 E-value=2.5e-11 Score=117.84 Aligned_cols=128 Identities=15% Similarity=0.188 Sum_probs=102.9
Q ss_pred ceeEEECHHHHHHHHHHHhcCCCceeEEEEeeeecC---CeEEEEEEEeCCccCCCCccccccc--HHHHHHHHHHHHHH
Q psy1714 160 FKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDA---NSMIVMDAFALPVEGTETRVNAQAQ--AYEYMTAYIEAAKE 234 (449)
Q Consensus 160 ~~~V~Is~~vLlkIl~Ha~~~~p~EVmGLLLG~~d~---~tl~Vtd~F~lP~~~tetrv~a~~e--~~ey~~~mlellrk 234 (449)
..++.|+..++.+.+.-|.. ..++||+|.|.... +..+|+.....|+.++.+.|+...+ ..+|+.
T Consensus 37 ~~t~vlPknLlkkFi~IAD~--~Tq~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~-------- 106 (254)
T 2og4_A 37 QNVYVLPKNLLKKFIEISDV--KIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD-------- 106 (254)
T ss_dssp SCEEEEEHHHHHHHHHTSCS--SSCCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTT--------
T ss_pred CcEEEcCHHHHHHHHHHhhc--cceEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchh--------
Confidence 36799999999999988754 46899999999743 4677888888888888777754321 112211
Q ss_pred hCCCCceEEEEecCCCCCCcccHhhHHhHHhhhc-cCCCeEEEEEcCCCCcCCCeeEEEEEEEccCCCC
Q psy1714 235 VGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQN-FQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYK 302 (449)
Q Consensus 235 vgr~e~VVGWYHSHP~~~~~pS~iDI~tQ~~yQ~-~~~p~VaLIvDP~~t~~~Gkv~IkAFRl~p~~y~ 302 (449)
-.++..+||-|+||.-.|++|..|+.|++.||. ..+.+|+|+|+|. .|..+++|||+.+.||.
T Consensus 107 -l~dLe~LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsft----pgs~sl~af~LT~~G~~ 170 (254)
T 2og4_A 107 -TEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFST----PGSVSLSAYNLTDEGYQ 170 (254)
T ss_dssp -CTTCEEEEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEE----TTEEEEEEEEECHHHHH
T ss_pred -hcCCEecceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecC----CCCceeEEEEcChhhhh
Confidence 157999999999999999999999999999998 5589999999985 57889999999997764
No 14
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=99.08 E-value=1.9e-10 Score=112.81 Aligned_cols=126 Identities=23% Similarity=0.276 Sum_probs=101.2
Q ss_pred ceeEEECHHHHHHHHHHHhcCCCceeEEEEeeeec---CCeEEEEEEEeCCccCCCCccccccc--HHHHHHHHHHHHHH
Q psy1714 160 FKDIKISALALLKMVMHARSGGTLEVMGLLLGKID---ANSMIVMDAFALPVEGTETRVNAQAQ--AYEYMTAYIEAAKE 234 (449)
Q Consensus 160 ~~~V~Is~~vLlkIl~Ha~~~~p~EVmGLLLG~~d---~~tl~Vtd~F~lP~~~tetrv~a~~e--~~ey~~~mlellrk 234 (449)
..++.|+..++.+.+.-|- ...++||+|.|+.- .+..+|+.....|+.++...|+...+ ..+| +
T Consensus 38 ~~t~vlPknllkkFi~IAD--lrTq~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~-------l-- 106 (273)
T 2p8r_A 38 GYTYILPKNILKKFITISD--LRTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHEL-------L-- 106 (273)
T ss_dssp SCEEEEEHHHHHHHHHTSC--SSSCCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTT-------T--
T ss_pred ccEEEecHHHHHHHHHHhh--ccceEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhh-------h--
Confidence 3579999999999987764 44689999999964 34678888888888888877754321 1122 1
Q ss_pred hCCCCceEEEEecCCCCCCcccHhhHHhHHhhhcc----C-CCeEEEEEcCCCCcCCCeeEEEEEEEccCCCC
Q psy1714 235 VGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNF----Q-EPFVAIVIDPVRTISAGKVCLGSFRTYPKGYK 302 (449)
Q Consensus 235 vgr~e~VVGWYHSHP~~~~~pS~iDI~tQ~~yQ~~----~-~p~VaLIvDP~~t~~~Gkv~IkAFRl~p~~y~ 302 (449)
.++..+||-|+||.-.|++|..|+.|++.||.. + +.+|+|+|+|. .|..+++|||+++.||.
T Consensus 107 --~dLe~LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsft----pgs~sl~af~LT~~G~~ 173 (273)
T 2p8r_A 107 --RDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFT----PGSVSLTAYKLTPSGYE 173 (273)
T ss_dssp --TTSEEEEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEE----TTEEEEEEEEECHHHHH
T ss_pred --ccccccceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecC----CCCceeEEEEcChHHhh
Confidence 579999999999999999999999999999974 3 48899999975 58889999999997764
No 15
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=98.61 E-value=1.4e-08 Score=96.69 Aligned_cols=77 Identities=9% Similarity=0.134 Sum_probs=65.6
Q ss_pred ccceeeehHHHHHHHHHhhhcC--CCeeEEeeecccccCCceeEeeccccccCCcccccchhhhH--HHHHHHHHHHhcc
Q psy1714 69 FFKDIKISALALLKMVMHARSG--GTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQA--YEYMTAYIEAAKE 144 (449)
Q Consensus 69 ~f~~v~is~~a~~km~~ha~~g--~~~evmg~~~g~~~~~~~~v~d~~~lpv~g~e~~vna~~~~--~~~m~~~~~~~~~ 144 (449)
=|++|.|+..++-||+.||+.+ +++||||+|+|++.++.+.|+++|.+|++||+.+|++.++. ++||. .
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~----~--- 112 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQD----Q--- 112 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHHHHHHHHH----H---
T ss_pred ccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChHHHHHHHh----h---
Confidence 3689999999999999999986 78999999999999999999999999999999999988754 34432 1
Q ss_pred ccccccccc
Q psy1714 145 VRHQEVIPL 153 (449)
Q Consensus 145 vr~~e~i~w 153 (449)
+..+.+-|
T Consensus 113 -~~l~~vGW 120 (211)
T 3rzv_A 113 -QGLITLGW 120 (211)
T ss_dssp -HTCEEEEE
T ss_pred -CCCEEEEE
Confidence 55666667
No 16
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=98.61 E-value=1.8e-08 Score=93.35 Aligned_cols=91 Identities=12% Similarity=0.162 Sum_probs=68.9
Q ss_pred cceeeehHHHHHHHHHhhhcC--CCeeEEeeecccccCCceeEeeccccccCCcccccchhhh--HHHHHHHHHHHhccc
Q psy1714 70 FKDIKISALALLKMVMHARSG--GTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQ--AYEYMTAYIEAAKEV 145 (449)
Q Consensus 70 f~~v~is~~a~~km~~ha~~g--~~~evmg~~~g~~~~~~~~v~d~~~lpv~g~e~~vna~~~--~~~~m~~~~~~~~~v 145 (449)
++.|.|+..++.||+.||+++ +++||||+|+|++.++.+.|+++|++|++||+.++++.++ .++|| .-
T Consensus 8 ~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~e~~~~~--------~~ 79 (178)
T 2znr_A 8 LRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQ--------DQ 79 (178)
T ss_dssp CCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHHHHHHHH--------HH
T ss_pred cEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHHHHHHHH--------Hh
Confidence 688999999999999999875 6799999999999989999999999999999999987654 44441 12
Q ss_pred ccccccccccCCCCceeEEECHHH
Q psy1714 146 RHQEVIPLTLIPHFFKDIKISALA 169 (449)
Q Consensus 146 r~~e~i~w~~~p~~~~~V~Is~~v 169 (449)
+..+.+-| +..++-.....++.-
T Consensus 80 ~~l~~vGw-yHSHP~~~~~pS~~D 102 (178)
T 2znr_A 80 HDLLTLGW-IHTHPTQTAFLSSVD 102 (178)
T ss_dssp HTCEEEEE-EEECSSSCSCCCHHH
T ss_pred CCCEEEEE-EeCCCCCCCCCCHHH
Confidence 45556666 333333333444433
No 17
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.37 E-value=2e-07 Score=94.11 Aligned_cols=87 Identities=22% Similarity=0.350 Sum_probs=73.2
Q ss_pred cceeeehHHHHHHHHHhh---hcCCCeeEEeeecccccCCceeEeeccccccCCcccccchhhhHHHHHHHHHHHhcccc
Q psy1714 70 FKDIKISALALLKMVMHA---RSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVR 146 (449)
Q Consensus 70 f~~v~is~~a~~km~~ha---~~g~~~evmg~~~g~~~~~~~~v~d~~~lpv~g~e~~vna~~~~~~~m~~~~~~~~~vr 146 (449)
.++|.|.+|++++|+.|. +.+++-.|+|.|+|..+++.|.|++||++|.+.++..++...--.+|+-+-++..++|.
T Consensus 5 ~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~ 84 (338)
T 4b4t_U 5 HEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKIN 84 (338)
T ss_dssp CSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHC
T ss_pred CCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcC
Confidence 479999999999999996 45677799999999999999999999999998888776655444578888888999997
Q ss_pred cccccccccC
Q psy1714 147 HQEVIPLTLI 156 (449)
Q Consensus 147 ~~e~i~w~~~ 156 (449)
+.|.+.-|+.
T Consensus 85 ~~e~iVGWY~ 94 (338)
T 4b4t_U 85 AKEKLIGWYH 94 (338)
T ss_dssp CSCEEEEEEE
T ss_pred ccCCEEEEEe
Confidence 7776665554
No 18
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=98.33 E-value=7.5e-07 Score=93.50 Aligned_cols=130 Identities=15% Similarity=0.203 Sum_probs=95.3
Q ss_pred ceeEEECHHHHHHHHHHHhcCCCceeEEEEeeeecC---CeEEEEEEEeCCccCCCCcccccccHHHHHHHHHHHHHHhC
Q psy1714 160 FKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDA---NSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVG 236 (449)
Q Consensus 160 ~~~V~Is~~vLlkIl~Ha~~~~p~EVmGLLLG~~d~---~tl~Vtd~F~lP~~~tetrv~a~~e~~ey~~~mlellrkvg 236 (449)
-..+.|+..++.+.+.-|- ...++||+|.|..-. +..+|+.....|+.|+.+.|+.. ...+ .+.... -
T Consensus 348 ~~tyVlPkNLLkKFI~IAD--lrTQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp-~lp~--he~~~~----l 418 (565)
T 3sbg_A 348 QNVYVLPKNLLKKFIEISD--VKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQIS-NIPD--IGDLPD----T 418 (565)
T ss_dssp SCEEEEEHHHHHHHHHHSC--SSSCCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEEC-CCCC--CTTSTT----C
T ss_pred CcEEEccHHHHHHHHHHhh--ccceeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECC-CCCc--cccccc----c
Confidence 3568999999999987664 455899999999753 35788877777888888777543 1100 000000 1
Q ss_pred CCCceEEEEecCCCCCCcccHhhHHhHHhhh-ccCCCeEEEEEcCCCCcCCCeeEEEEEEEccCCCC
Q psy1714 237 RLENAIGWYHSHPGYGCWLSGIDVSTQMLNQ-NFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYK 302 (449)
Q Consensus 237 r~e~VVGWYHSHP~~~~~pS~iDI~tQ~~yQ-~~~~p~VaLIvDP~~t~~~Gkv~IkAFRl~p~~y~ 302 (449)
.++..+||-|+||.-.|++|..|+.||+..- .....+|.+.|+- ..|.+++.||.+.++||.
T Consensus 419 ~dLe~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvsf----tPGS~SLsAy~LT~eGye 481 (565)
T 3sbg_A 419 EGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFS----TPGSVSLSAYNLTDEGYQ 481 (565)
T ss_dssp TTCEEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEEE----ETTEEEEEEEEECHHHHH
T ss_pred ccCEecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEEe----cCCceEEEEEecCHhHHH
Confidence 5799999999999999999999999987442 2223677777773 369999999999998763
No 19
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=98.20 E-value=1.9e-06 Score=76.62 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=46.5
Q ss_pred eeehHHHHHHHHHhhhcCCCeeEEeeecccccCCceeEeeccccc-cCCcccc
Q psy1714 73 IKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALP-VEGTETR 124 (449)
Q Consensus 73 v~is~~a~~km~~ha~~g~~~evmg~~~g~~~~~~~~v~d~~~lp-v~g~e~~ 124 (449)
++|+..++.+|+.||+++.|.|+||+|+|+..+++++|.++|++| +..+.++
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~~ 54 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEH 54 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSS
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCcEEEEEEECCCcCCCCce
Confidence 689999999999999999999999999999999899999999998 4444444
No 20
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=98.10 E-value=2e-06 Score=77.03 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=47.1
Q ss_pred eeehHHHHHHHHHhhhcCCCeeEEeeeccccc-CCceeEeeccccccC---Ccccccc
Q psy1714 73 IKISALALLKMVMHARSGGTLEVMGLLLGKID-ANSMIVMDAFALPVE---GTETRVN 126 (449)
Q Consensus 73 v~is~~a~~km~~ha~~g~~~evmg~~~g~~~-~~~~~v~d~~~lpv~---g~e~~vn 126 (449)
++|+..++.+|+.||+++.|.|+||+|+|+.. +++++|.++|++|-. .++++..
T Consensus 1 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~ 58 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYE 58 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSS
T ss_pred CEeCHHHHHHHHHHHHhcCCcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEE
Confidence 47999999999999999999999999999997 889999999999864 3445543
No 21
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=97.58 E-value=3.1e-05 Score=66.93 Aligned_cols=46 Identities=28% Similarity=0.328 Sum_probs=41.3
Q ss_pred eeeehHHHHHHHHHhhhcCCCeeEEeeecccccCCceeEeeccccccCCc
Q psy1714 72 DIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGT 121 (449)
Q Consensus 72 ~v~is~~a~~km~~ha~~g~~~evmg~~~g~~~~~~~~v~d~~~lpv~g~ 121 (449)
.++|+..++.+|+.||+++.|.|+||+|+|+.. +|+++|++|..++
T Consensus 3 ~v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~~----~v~~~~~~p~~~~ 48 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSAHPDEFIALLSGSKD----VMDELIFLPFVSG 48 (124)
T ss_dssp SCEECHHHHHHHHHHHHHHTTSCCEEEEEESTT----EECEEEECCCCC-
T ss_pred EEEEcHHHHHHHHHHHHhcCCCeeEEEEecccC----EEEEEEECCCCCC
Confidence 478999999999999999999999999999974 8999999995554
No 22
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=78.17 E-value=14 Score=31.84 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCCceEEEEecCCCCCCcccHhhHHh
Q psy1714 237 RLENAIGWYHSHPGYGCWLSGIDVST 262 (449)
Q Consensus 237 r~e~VVGWYHSHP~~~~~pS~iDI~t 262 (449)
.+-.-|..-|-||++.+.||..|+..
T Consensus 66 ~~A~~vIl~HNHPSG~~~PS~~D~~~ 91 (126)
T 2qlc_A 66 ESAHSIILVHNHPSGDVQPSNADKQV 91 (126)
T ss_dssp TTCSEEEEEEECSSSCCSCCHHHHHH
T ss_pred cCCcEEEEEecCCCCCCCCCHHHHHH
Confidence 34688899999999999999999984
Done!