RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1714
(449 letters)
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated
deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens}
PDB: 3rzu_A
Length = 211
Score = 160 bits (407), Expect = 3e-47
Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 26/171 (15%)
Query: 157 PHFFKDIKISALALLKMVMHARSG--GTLEVMGLLLGKIDANSMIVMDAFALPVEGTETR 214
+ + + + + A + + G+L GK+ N +
Sbjct: 38 IDGLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDY 97
Query: 215 VNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFV 274
N + + ++ + + +GW H+HP +LS +D+ T Q V
Sbjct: 98 CNTENEEELFL-------IQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESV 150
Query: 275 AIVIDPVRTISAGKVCLGSFRTYPKGYK-----------PANEEPSEYQTI 314
AIV P G F+ G + P +++P + +
Sbjct: 151 AIVCSPKFQE------TGFFKLTDHGLEEISSCRQKGFHPHSKDPPLFCSC 195
Score = 91.3 bits (226), Expect = 2e-21
Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 2/90 (2%)
Query: 48 KYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSG--GTLEVMGLLLGKIDA 105
DR + ++ + + + + + A + + G+L GK+
Sbjct: 19 VVDRSLKPGALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMR 78
Query: 106 NSMIVMDAFALPVEGTETRVNAQAQAYEYM 135
N + N + + ++
Sbjct: 79 NEFTITHVLIPKQSAGSDYCNTENEEELFL 108
>2znr_A AMSH-like protease; metal binding protein, alternative splicing,
hydrolase, metal-binding, metalloprotease, UBL
conjugation pathway, zinc; 1.20A {Homo sapiens} PDB:
2znv_A
Length = 178
Score = 149 bits (376), Expect = 4e-43
Identities = 33/193 (17%), Positives = 55/193 (28%), Gaps = 33/193 (17%)
Query: 157 PHFFKDIKISALALLKMVMHARSG--GTLEVMGLLLGKIDANSMIVMDAFALPVEGTETR 214
+ + + K + A S +E G+L GK+ N +
Sbjct: 5 MEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDY 64
Query: 215 VNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFV 274
+ + + +GW H+HP +LS +D+ T Q +
Sbjct: 65 CDMENVEELFNVQDQ-------HDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAI 117
Query: 275 AIVIDPVRTISAGKVCLGSFRTYP-----------KGYKPANEEPSEYQTIPLNKIEDFG 323
AIV P G FR KG+ P +EP +
Sbjct: 118 AIVCSPKHK------DTGIFRLTNAGMLEVSACKKKGFHPHTKEPRLFSIC-------KH 164
Query: 324 VHCKQYYSLDVSY 336
V K + +
Sbjct: 165 VLVKDIKIIVLDL 177
Score = 78.6 bits (193), Expect = 2e-17
Identities = 9/76 (11%), Positives = 20/76 (26%), Gaps = 2/76 (2%)
Query: 67 PHFFKDIKISALALLKMVMHARSG--GTLEVMGLLLGKIDANSMIVMDAFALPVEGTETR 124
+ + + K + A S +E G+L GK+ N +
Sbjct: 5 MEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDY 64
Query: 125 VNAQAQAYEYMTAYIE 140
+ + +
Sbjct: 65 CDMENVEELFNVQDQH 80
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34,
JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P
ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Length = 187
Score = 131 bits (331), Expect = 2e-36
Identities = 30/160 (18%), Positives = 65/160 (40%), Gaps = 10/160 (6%)
Query: 161 KDIKISALALLKMVMH----ARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVN 216
+ + + L LL +V H + G V+G+LLG + V ++FA+P + + +
Sbjct: 8 QKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDS 67
Query: 217 AQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAI 276
++Y+ K+V E +GWYH+ P L D++ L + + V +
Sbjct: 68 VWFLDHDYLENMYGMFKKVNARERIVGWYHTGPK----LHKNDIAINELMKRYCPNSVLV 123
Query: 277 VIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPL 316
+ID + ++ + + + ++ +
Sbjct: 124 IIDV--KPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTS 161
Score = 78.5 bits (193), Expect = 3e-17
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 71 KDIKISALALLKMVMH----ARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVN 126
+ + + L LL +V H + G V+G+LLG + V ++FA+P + + +
Sbjct: 8 QKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDS 67
Query: 127 AQAQAYEYMTAYIEAAKEVRHQEVI 151
++Y+ K+V +E I
Sbjct: 68 VWFLDHDYLENMYGMFKKVNARERI 92
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein
structure initiati northeast structural genomics
consortium; NMR {Desulfitobacterium hafniense}
Length = 146
Score = 109 bits (274), Expect = 7e-29
Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 30/171 (17%)
Query: 163 IKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAY 222
I ++ + +M+ HAR E GLL G+ D + V + L N
Sbjct: 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGDDRWVERVYPLN--------NLDQSPE 53
Query: 223 EYMTA---YIEAAKEV-GRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVI 278
+ + A K++ +G +HSHP S D + +P ++ +I
Sbjct: 54 HFSMDPREQLTAVKDMRKNGWVMLGNFHSHPATPARPSAEDK------RLAFDPSLSYLI 107
Query: 279 DPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQY 329
+ K SF + + E+ H +
Sbjct: 108 --ISLAEPQKPVCKSFLI----------KKDGVDEEEIILKEELEHHHHHH 146
Score = 62.3 bits (151), Expect = 6e-12
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 73 IKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAY 132
I ++ + +M+ HAR E GLL G+ D + V + L N
Sbjct: 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGDDRWVERVYPLN--------NLDQSPE 53
Query: 133 EYMTA---YIEAAKEVRH 147
+ + A K++R
Sbjct: 54 HFSMDPREQLTAVKDMRK 71
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P
N-terminal) domain, unknown function; 2.50A {Drosophila
melanogaster}
Length = 141
Score = 103 bits (257), Expect = 2e-26
Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 13/139 (9%)
Query: 163 IKISALALLKMVMH-----ARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNA 217
I + L ++ + H A+ G +V G L+GK ++ +M++F L +
Sbjct: 8 ISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVI 67
Query: 218 QAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIV 277
Y + K+V + IGWY + + D+ Q E + +
Sbjct: 68 NKDYYNKK---EQQYKQVFSDLDFIGWYTTGDN----PTADDIKIQRQIAAINECPIMLQ 120
Query: 278 IDPVRTISAGKVCLGSFRT 296
++P+ S + L F +
Sbjct: 121 LNPLSR-SVDHLPLKLFES 138
Score = 66.1 bits (161), Expect = 2e-13
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 73 IKISALALLKMVMH-----ARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNA 127
I + L ++ + H A+ G +V G L+GK ++ +M++F L +
Sbjct: 8 ISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVI 67
Query: 128 QAQAYEYMTAYIEAAKEVRHQEVI 151
Y + K+V
Sbjct: 68 NKDYYNKK---EQQYKQVFSDLDF 88
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Salinibacter
ruber dsm 13855}
Length = 153
Score = 99.8 bits (248), Expect = 3e-25
Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 13/147 (8%)
Query: 163 IKISALALLKMVMHARSGGTLEVMGLLLGKI--DANSMIVMDAFALPVEGTETRVNAQAQ 220
+K + L ++ +H E G LLG + D ++ + A + +
Sbjct: 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELT 60
Query: 221 AYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDP 280
A +Y A A + + + +G YHSHP + S D+ + P VI
Sbjct: 61 ADDYRAADAAAQE---QGLDVVGVYHSHPDHPARPSATDL------EEATFPGFTYVI-- 109
Query: 281 VRTISAGKVCLGSFRTYPKGYKPANEE 307
V L ++ P + E+
Sbjct: 110 VSVRDGAPEALTAWALAPDRSEFHRED 136
Score = 69.3 bits (169), Expect = 2e-14
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 73 IKISALALLKMVMHARSGGTLEVMGLLLGKI--DANSMIVMDAFALPVEGTETRVNAQAQ 130
+K + L ++ +H E G LLG + D ++ + A + +
Sbjct: 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELT 60
Query: 131 AYEYMTAYIEAAKE 144
A +Y A A ++
Sbjct: 61 ADDYRAADAAAQEQ 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 3e-09
Identities = 86/502 (17%), Positives = 161/502 (32%), Gaps = 143/502 (28%)
Query: 21 SEDSQIAQKTWIMENNIETLSATDEIF-KYDRKRQQDMIAAKPW--EKDPHFFKDIKI-- 75
+E Q + T + + L +++F KY+ R Q + + E P K++ I
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA--KNVLIDG 157
Query: 76 ------SALAL------------------LKMVMHARSGGTLEVMGLLLGKIDANSMIVM 111
+ +AL L + LE++ LL +ID N
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 112 DAFA---LPVEGTETRVNAQAQAYEYMTAYIEAAKEVRHQEVIPL------TLIPHFFKD 162
D + L + + + ++ Y + V++ + L+ FK
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 163 I--KISALALLKMVM-HARSGGTL-EVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQ 218
+ +SA + + H T EV LLL +D LP E N +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD------CRPQDLPRE--VLTTNPR 328
Query: 219 AQAYEYMTAYIEAAKE-VGRLENAIGWYHSHPGYGCW--LSGIDVSTQMLNQN-FQEPFV 274
+ + A E+ ++ + +N W H C + I+ S +L +++ F
Sbjct: 329 RLS---IIA--ESIRDGLATWDN---WKH----VNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 275 AIVIDPVRT-ISAGKVCLGSFRTYPKGYKP------------ANEEPSEYQTIPLNKI-- 319
+ + P I + L ++P E TI + I
Sbjct: 377 RLSVFPPSAHIPT-IL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-TISIPSIYL 433
Query: 320 -------EDFGVHCK--QYYS--------------LDVSYF---------------KSSL 341
++ +H +Y+ LD YF + +L
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-QYFYSHIGHHLKNIEHPERMTL 492
Query: 342 DRRL-LDSLW--NK------YWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVRNF 392
R + LD + K W + S + L + +CD K E+ +A++ +F
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL-DF 551
Query: 393 LISESQERRPETKLMKATKDCC 414
L + E L+ +K
Sbjct: 552 L------PKIEENLIC-SKYTD 566
Score = 34.1 bits (77), Expect = 0.11
Identities = 47/279 (16%), Positives = 83/279 (29%), Gaps = 86/279 (30%)
Query: 15 PSTSKMSEDSQIAQKTWIMENNIETLSATDEIFKYDRKRQQDM-IAAKPWEKDPHFFKDI 73
+T + + T I+E+++ L + RK + + F
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEY-----RKMFDRLSV----------FPPSA 385
Query: 74 KISA--LALL----------KMV--MHARS-------GGTLEVMGLLL-------GKIDA 105
I L+L+ +V +H S T+ + + L +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 106 NSMIVMDAFALPVE-GTETRVNAQAQAYEYMTAYIEAAKEVRHQEVIPLT----LIPHFF 160
+ IV D + +P ++ + Y Y ++I H + I L F
Sbjct: 446 HRSIV-DHYNIPKTFDSDDLIPPYLDQYFY--SHI-----GHHLKNIEHPERMTLFRMVF 497
Query: 161 KD-------IKISALALLKMVMHARSGGTLEVMGLL------LGKIDA-NSMIVMD--AF 204
D I+ + A SG L + L + D +V F
Sbjct: 498 LDFRFLEQKIRHDSTAW------NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 205 ALP------VEGTETRVNAQAQAYEYMTAYIEAAKEVGR 237
LP + T + A E + EA K+V R
Sbjct: 552 -LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 32.9 bits (74), Expect = 0.24
Identities = 18/138 (13%), Positives = 34/138 (24%), Gaps = 55/138 (39%)
Query: 319 IEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQ----- 373
F + CK L ++ D+L+
Sbjct: 259 WNAFNLSCK-----------------------------ILLTTRFKQVTDFLSAATTTHI 289
Query: 374 -MCDLSDKLEQAES-ALVRNFLISESQERRPETKLMKATKDCCKTTIECIHGLMAQMIKQ 431
+ S L E +L+ +L Q+ E + +I +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV---------LT-----TNPRRLSIIAE 335
Query: 432 QLFNH-----NMKHVETE 444
+ + N KHV +
Sbjct: 336 SIRDGLATWDNWKHVNCD 353
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination,
archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP:
c.97.3.1 PDB: 1r5x_A
Length = 124
Score = 40.0 bits (93), Expect = 2e-04
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 17/100 (17%)
Query: 163 IKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAY 222
+KIS L ++ A+S E + LL G ++ + LP A +
Sbjct: 4 MKISRGLLKTILEAAKSAHPDEFIALLSGS----KDVMDELIFLPFVSGSVS----AVIH 55
Query: 223 EYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVST 262
M + G HSHP C S D+S
Sbjct: 56 LDM---------LPIGMKVFGTVHSHPSPSCRPSEEDLSL 86
Score = 28.8 bits (64), Expect = 1.6
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 73 IKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRV 125
+KIS L ++ A+S E + LL G ++ + LP
Sbjct: 4 MKISRGLLKTILEAAKSAHPDEFIALLSGS----KDVMDELIFLPFVSGSVSA 52
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain,
protein-PR interaction, PRP8P, pseudoenzyme, spliceosome
activation; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 40.7 bits (95), Expect = 4e-04
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 9/111 (8%)
Query: 242 IGWYHSHPGYGCWLSGIDVSTQM-LNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKG 300
+GW H+ +++ +V+T L + + + I I + G V L ++ +G
Sbjct: 113 LGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISI----FSTPGSVSLSAYNLTDEG 168
Query: 301 YKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWN 351
Y+ E + F H + S ++ ++WN
Sbjct: 169 YQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPS----GNVWN 215
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.002
Identities = 52/334 (15%), Positives = 100/334 (29%), Gaps = 130/334 (38%)
Query: 2 AASSSTSSSSSVVPSTSKMSEDSQIAQKTWIMENNIETLSATDEIFKYDRKRQQDMIAAK 61
++S+ PS + S ++ + M LS ++ +++ QD +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSP-M------LSISN----LTQEQVQDYVN-- 354
Query: 62 PWEKDPHFFKDIKISALALL----KMVM--HARSGGTLEVMGLLLGKIDANS-------- 107
+ + H ++ ++L+ +V+ +S L + L L K A S
Sbjct: 355 --KTNSHLPAGKQVE-ISLVNGAKNLVVSGPPQS---LYGLNLTLRKAKAPSGLDQSRIP 408
Query: 108 ------MIVMDAFALPVEGTETRVNAQAQAYEYMTA-----YIEAAKEVRHQEVIPLTLI 156
F LPV + + A ++ +++++
Sbjct: 409 FSERKLKFSN-RF-LPV-----------------ASPFHSHLLVPASDLINKDLVK---- 445
Query: 157 PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVN 216
++ +A + V G L V+ G I IV LPV+ T
Sbjct: 446 ----NNVSFNAKDIQIPVYDTFDGSDLRVLS---GSISER--IVDCIIRLPVKWETT-TQ 495
Query: 217 AQAQAYEYMTAYIEAAKEVGRLENAIGWYHSH-----PGYGCWLSGIDVSTQMLNQNFQ- 270
+A +H PG SG+ + ++N
Sbjct: 496 FKA---------------------------THILDFGPGG---ASGL---GVLTHRNKDG 522
Query: 271 --EPFVAIVIDPVRTISAGKVCLGSFRTYPKGYK 302
VR I AG + + Y G+K
Sbjct: 523 TG----------VRVIVAGTLDINPDDDY--GFK 544
Score = 37.3 bits (86), Expect = 0.012
Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 67/230 (29%)
Query: 202 DAFA--LPVEGTETRV--NAQAQAYE-------YMTAYIEAAK-----EVGRLENAIGWY 245
+ F LP E TE + E Y+++ +E +K +V L + +
Sbjct: 35 EQFNKILP-EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV--LNLCLTEF 91
Query: 246 HSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPAN 305
+ C+L G D+ A ++ T L + Y A
Sbjct: 92 EN-----CYLEGNDIHA----------LAAKLLQENDTTLVKTKEL--IKNYITARIMAK 134
Query: 306 EE-PSEYQTIPLNKIED--------FGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKY--W 354
+ + + + FG Q + D YF+ L L+ Y
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFG---GQGNTDD--YFEE------LRDLYQTYHVL 183
Query: 355 VNTL--SSSSLL-------TNADYLTGQMCDLSDKLEQAESALVRNFLIS 395
V L S+ L +A+ + Q ++ + LE + +++L+S
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Score = 33.9 bits (77), Expect = 0.15
Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 43/165 (26%)
Query: 258 IDVSTQML---NQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTI 314
+ V T +Q QE F I+ +P +A ++EP+
Sbjct: 20 LLVPTASFFIASQ-LQEQFNKILPEPTEGFAA------------------DDEPT--TPA 58
Query: 315 PLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADY--LTG 372
L + F Y S V K ++L+ ++ + L D L
Sbjct: 59 EL--VGKF----LGYVSSLVEPSKVGQFDQVLNLCLTEF------ENCYLEGNDIHALAA 106
Query: 373 QMCDLSDKLEQAESALVRNFLISESQERRPETK-----LMKATKD 412
++ +D L++N++ + +RP K L +A +
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A
{Caenorhabditis elegans} PDB: 2p87_A
Length = 273
Score = 38.4 bits (89), Expect = 0.003
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 242 IGWYHSHPGYGCWLSGIDVSTQ--MLNQNFQ---EPFVAIVIDPVRTISAGKVCLGSFRT 296
+GW H+ P LS DV+T +L N E V I + + G V L +++
Sbjct: 112 LGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITC----SFTPGSVSLTAYKL 167
Query: 297 YPKGYK 302
P GY+
Sbjct: 168 TPSGYE 173
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain;
3.28A {Saccharomyces cerevisiae}
Length = 565
Score = 37.8 bits (87), Expect = 0.007
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 12/87 (13%)
Query: 242 IGWYHSHPGYGCWLSGIDVSTQM-LNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKG 300
+GW H+ +++ +V+T L + + + I I + G V L ++ +G
Sbjct: 424 LGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISI----FSTPGSVSLSAYNLTDEG 479
Query: 301 YK-------PANEEPSEYQTIPLNKIE 320
Y+ N ++ +
Sbjct: 480 YQWGEENKDIMNVLSEGFEPTFSTHAQ 506
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 30.3 bits (69), Expect = 1.2
Identities = 5/53 (9%), Positives = 10/53 (18%), Gaps = 3/53 (5%)
Query: 337 FKSSLDRRLLDSLWNKYWVN-TLSSSSLLTNADYLTGQMCDLSDKLEQAESAL 388
L + W K N + L + + +
Sbjct: 171 VDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPV--NLILARDVSRKLVRGIM 221
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 30.0 bits (68), Expect = 1.9
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 194 DANSMIVMDA-FALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYG 252
D S V DA F++ + G A+ Y + I AAK+ G AI PGYG
Sbjct: 65 DKYSQHVTDADFSVALHGR-----TAAETYLDIDKIINAAKKTG--AQAI-----IPGYG 112
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain,
PSI-2, NYSGXRC, structur genomics, protein structure
initiative; 2.00A {Ralstonia solanacearum}
Length = 335
Score = 29.6 bits (67), Expect = 2.3
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 337 FKSSLDRRLLDSLWNKYWVN-TLSSSSLLTNADYLTGQMCD 376
++ + +W K W N T++ S+LT A ++ D
Sbjct: 191 LQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATC--DRILD 229
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 29.2 bits (66), Expect = 3.0
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 207 PVEGTETRVNA--QAQAYEYMTAYIEAAKEVGRLENAIG 243
P E T +A A+A+ + ++E A+ L G
Sbjct: 380 PAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAG 418
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83,
structural genomics, PSI-2; HET: MSE; 2.15A
{Porphyromonas gingivalis}
Length = 317
Score = 28.8 bits (65), Expect = 3.3
Identities = 2/41 (4%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 337 FKSSLDRRLLDSLWNKYWVN-TLSSSSLLTNADYLTGQMCD 376
++ + + K+ + ++++ + G +
Sbjct: 186 IRAYNPTDIDWYIMKKFMMISVTATATAYFDKPI--GSILT 224
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 28.8 bits (65), Expect = 5.0
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 11/55 (20%)
Query: 202 DAFALPVEGTETRVN----AQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYG 252
D A V + V+ A +Y I AA G AI HPGYG
Sbjct: 62 DRHARHVAEADIAVDLGGAKPADSYLRGDRIIAAALASG--AQAI-----HPGYG 109
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 27.6 bits (62), Expect = 7.9
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 337 FKSSLDRRLLDSLWNKYWVN-TLSSSSLLTNADYLTGQMCDLSDKLEQAESAL 388
+ +LW K +N ++ S +T Y G++ +
Sbjct: 182 VPVETSDNVRGALWAKLILNCAYNALSAITQLPY--GRLVRGEGVEAVMRDVM 232
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 28.1 bits (63), Expect = 8.8
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 210 GTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYG 252
R ++Y + I AK G +AI HPGYG
Sbjct: 67 PHLARDLGPIESYLSIDEVIRVAKLSG--ADAI-----HPGYG 102
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 27.6 bits (62), Expect = 9.0
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 212 ETRVNAQ--AQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGY 251
+ + +A+E + +YIE K+ GRL G S G+
Sbjct: 357 DNYMGPVIDEKAFEKIMSYIEIGKKEGRLM-TGGEGDSSTGF 397
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.374
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,537,835
Number of extensions: 388037
Number of successful extensions: 823
Number of sequences better than 10.0: 1
Number of HSP's gapped: 804
Number of HSP's successfully gapped: 38
Length of query: 449
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 352
Effective length of database: 3,993,456
Effective search space: 1405696512
Effective search space used: 1405696512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)