RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1714
         (449 letters)



>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 121

 Score = 58.9 bits (142), Expect = 2e-11
 Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 17/101 (16%)

Query: 163 IKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAY 222
           +KIS   L  ++  A+S    E + LL G  D    ++ +   LP               
Sbjct: 4   MKISRGLLKTILEAAKSAHPDEFIALLSGSKD----VMDELIFLPFVSGSVSAVIHLDML 59

Query: 223 EYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQ 263
                               G  HSHP   C  S  D+S  
Sbjct: 60  PIG-------------MKVFGTVHSHPSPSCRPSEEDLSLF 87



 Score = 40.4 bits (94), Expect = 6e-05
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 73  IKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAY 132
           +KIS   L  ++  A+S    E + LL G  D    ++ +   LP               
Sbjct: 4   MKISRGLLKTILEAAKSAHPDEFIALLSGSKD----VMDELIFLPFVSGSVSAVIHLDML 59

Query: 133 EY 134
             
Sbjct: 60  PI 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,560,522
Number of extensions: 70184
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 2
Length of query: 449
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 361
Effective length of database: 1,199,356
Effective search space: 432967516
Effective search space used: 432967516
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)