BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17141
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1
Length = 4456
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
SL +DKD+I +K+LKKI Y PDF P+ IG VS+AAKSL WV A+E Y +L++ ++
Sbjct: 3184 SLINFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVE 3243
Query: 91 RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
P I L + +L E E+ E + LE
Sbjct: 3244 ---PKRIRMNAAMAQLQEKQAALAEAQEKLREVAEKLE 3278
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 36/51 (70%)
Query: 76 VMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDI 126
V+ + F++ RQYP++++CTTI+W + P ++L+EVAE+++ VD+
Sbjct: 2918 VLCLSPVGDPFRNWIRQYPALVNCTTINWFSEWPREALLEVAEKYIIGVDL 2968
>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3
Length = 4427
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
SL +DKD+I +K+LKKI Y PDF P+ IG VS+AAKSL WV A+E Y +L++ ++
Sbjct: 3155 SLINFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVE 3214
Query: 91 RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
P I L + +L E E+ E + LE
Sbjct: 3215 ---PKRIRMNAALAQLREKQAALAEAQEKLREVAEKLE 3249
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 36/51 (70%)
Query: 76 VMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDI 126
V+ + F++ RQYP++++CTTI+W + P+++L+EVAE+ L VD+
Sbjct: 2889 VLCLSPMGDPFRNWIRQYPALVNCTTINWFSEWPQEALLEVAEKCLIGVDL 2939
>sp|Q9MBF8|DYH1B_CHLRE Dynein-1-beta heavy chain, flagellar inner arm I1 complex
OS=Chlamydomonas reinhardtii GN=DHC10 PE=1 SV=1
Length = 4513
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 19 RFPNYRKNCTRIS-------LYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKS 71
R PN+ + R+S L E+DKD + + +LKKI + PDF E+I VS AA
Sbjct: 3221 RPPNWDEAKKRLSDANFMQSLKEFDKDKLDDSLLKKIGKFTANPDFTYEKINTVSAAASG 3280
Query: 72 LSKWVMAIEKYAQLFKDI 89
+ KWV A+E Y + KD+
Sbjct: 3281 MCKWVHAMETYGYVAKDV 3298
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 76 VMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNV 131
V+ + + F++ R +P +++CTTIDW + P +L EVA++ L VD+ T V
Sbjct: 2975 VLCLSPVGEAFRERCRMFPGLVNCTTIDWFTEWPADALFEVAQKQLMDVDLGSTEV 3030
>sp|Q0VDD8|DYH14_HUMAN Dynein heavy chain 14, axonemal OS=Homo sapiens GN=DNAH14 PE=2 SV=3
Length = 3507
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 32 LYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQR 91
L DKD IP+K+ K+ V LPDF+P +I +VSVA SL +WV+A+ Y ++ K +
Sbjct: 2408 LINLDKDSIPDKVFVKLKKIVTLPDFNPHKISLVSVACCSLCQWVIALNNYHEVQKVVG- 2466
Query: 92 QYPSIIDCTTIDWILDCPEQSLMEVAERFLETV 124
P I +L Q L E +R L+ +
Sbjct: 2467 --PKQIQVAEAQNVLKIARQRLAE-KQRGLQLI 2496
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 86 FKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLE 122
F+ R YPS+I TIDW PE++L+ VA FL+
Sbjct: 2150 FRQNCRVYPSMISSCTIDWYERWPEEALLIVANSFLK 2186
>sp|Q9C0G6|DYH6_HUMAN Dynein heavy chain 6, axonemal OS=Homo sapiens GN=DNAH6 PE=1 SV=3
Length = 4158
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 32 LYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
L EYDK++I +IL K+ Y+N PDF PE++ VS A KS+ WV A++ Y+++ K ++
Sbjct: 2841 LLEYDKENIKPQILAKLQKYINNPDFVPEKVEKVSKACKSMCMWVRAMDLYSRVVKVVE 2899
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 76 VMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVD 125
V+ + + F+ R +PS+++C TIDW + P ++L+ V++ F VD
Sbjct: 2575 VLCMSPVGEAFRSRCRMFPSLVNCCTIDWFVQWPREALLSVSKTFFSQVD 2624
>sp|Q8WXX0|DYH7_HUMAN Dynein heavy chain 7, axonemal OS=Homo sapiens GN=DNAH7 PE=1 SV=2
Length = 4024
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 31 SLYEYDKDHIPEKILKKI-TNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDI 89
SL+EYDKD+IP + I NY+ PDF PE+I S AA+ L KWV+A++ Y ++ K +
Sbjct: 2751 SLHEYDKDNIPPAYMNIIRKNYIPNPDFVPEKIRNASTAAEGLCKWVIAMDSYDKVAKIV 2810
Query: 90 QRQYPSIIDCTTIDWILDCP-------EQSLMEVAERFLETVDILETN 130
P I + L + +L EV ++ D LE N
Sbjct: 2811 A---PKKIKLAAAEGELKIAMDGLRKKQAALKEVQDKLARLQDTLELN 2855
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 76 VMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
V+A+ F++ R++P++++C TIDW PE +L VA RFLE +++ E
Sbjct: 2472 VLAMSPIGDAFRNRLRKFPALVNCCTIDWFQSWPEDALQAVASRFLEEIEMSE 2524
>sp|Q63170|DYH7_RAT Dynein heavy chain 7, axonemal OS=Rattus norvegicus GN=Dnah7 PE=2
SV=2
Length = 4057
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 31 SLYEYDKDHIPEKILKKI-TNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDI 89
SL+EYDKD+IP + I +Y+ PDF PE+I S AA+ L KWV+A++ Y ++ K +
Sbjct: 2784 SLHEYDKDNIPPAYMNIIRKSYIPNPDFVPEKIRNASTAAEGLCKWVIAMDSYDKVAKIV 2843
Query: 90 QRQYPSIIDCTTIDWILDCP-------EQSLMEVAERFLETVDILETN 130
P I + L + +L EV ++ + D LE N
Sbjct: 2844 A---PKKIKLAAAEGELRIAMEGLRKKQAALREVQDKLAKLQDTLELN 2888
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 76 VMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
V+A+ F+ R++P++++C TIDW PE +L VA RFLE +++ E
Sbjct: 2505 VLAMSPIGDAFRIRLRKFPALVNCCTIDWFQSWPEDALEAVASRFLEDIEMSE 2557
>sp|P23098|DYHC_TRIGR Dynein beta chain, ciliary OS=Tripneustes gratilla PE=1 SV=1
Length = 4466
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
SL YDK++I E LK I Y+N P+F+PE I S+AA L WV+ I K+ ++ D++
Sbjct: 3204 SLINYDKENIHENCLKSIKEYLNDPEFEPEYIKGKSLAAGGLCSWVVNIVKFYNVYCDVE 3263
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 34/41 (82%)
Query: 91 RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNV 131
R++P++++CT+IDW + P+++L+ V+ RFL+ V++L+ ++
Sbjct: 2947 RKFPAVVNCTSIDWFHEWPQEALVSVSMRFLDEVELLKGDI 2987
>sp|Q9P2D7|DYH1_HUMAN Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4
Length = 4330
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
SL+++DKD+I + ++K I Y++ +F P I VS A S+ +WV A+ KY + K ++
Sbjct: 2995 SLFKFDKDNIGDVVIKAIQPYIDNEEFQPATIAKVSKACTSICQWVRAMHKYHFVAKAVE 3054
Query: 91 RQYPSII----DCTTIDWILDCPEQSLMEVAE 118
+ +++ D ILD +Q L EV +
Sbjct: 3055 PKRQALLEAQDDLGVTQRILDEAKQRLREVED 3086
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSV---AAKSLSKWVMAIEKYAQLFK 87
+LY D+ ++I+ + Y+ P + +++ +S V+ + ++F+
Sbjct: 2668 NLYTADEQ---DQIVSTMRPYIQEQGLQPTKANLMAAYTGRVRSNIHMVLCMSPIGEVFR 2724
Query: 88 DIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNVLEVQ 135
RQ+PS+++C TIDW + P ++L VA FL + LE++ E+Q
Sbjct: 2725 ARLRQFPSLVNCCTIDWFNEWPAEALKSVATVFLNEIPELESSQEEIQ 2772
>sp|Q63164|DYH1_RAT Dynein heavy chain 1, axonemal OS=Rattus norvegicus GN=Dnah1 PE=2
SV=2
Length = 4516
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
SL+++DKD+I E ++K I Y++ +F P I VS A S+ +WV A+ KY + K ++
Sbjct: 3228 SLFKFDKDNIGEAVIKAIQPYIDNEEFQPAAIAKVSKACTSICQWVRAMHKYHFVAKAVE 3287
Query: 91 RQYPSIIDCTTIDWILDCPEQSLMEVAERFLE 122
+ ++ + Q +EV +R LE
Sbjct: 3288 PKRQALREA-----------QDDLEVTQRILE 3308
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 76 VMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
V+ + ++F+ RQ+PS+++C TIDW + P ++L VA RFL + LE
Sbjct: 2946 VLCMSPIGEVFRARLRQFPSLVNCCTIDWFNEWPAEALQSVATRFLHEIPELE 2998
>sp|Q8BW94|DYH3_MOUSE Dynein heavy chain 3, axonemal OS=Mus musculus GN=Dnah3 PE=1 SV=2
Length = 4083
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 31 SLYEYDKDHIPEKILKKIT-NYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFK 87
SL YDKD+IP I+K+I +++ PDF P I VS A + L KWV A+E Y ++ K
Sbjct: 2809 SLKTYDKDNIPSVIMKRIRERFIDHPDFQPAVIKNVSSACEGLCKWVRAMEVYDRVAK 2866
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 77 MAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDI 126
+A+ F+ R +PS+I+C TIDW P +L VA +FLE V++
Sbjct: 2531 LAMSPIGDAFRTRLRMFPSLINCCTIDWFQSWPTDALELVANKFLEDVEL 2580
>sp|Q9UFH2|DYH17_HUMAN Dynein heavy chain 17, axonemal OS=Homo sapiens GN=DNAH17 PE=1 SV=2
Length = 4485
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDI 89
SL ++DK+HIPE LK Y P FDPE I S AA L W + I ++ +++ D+
Sbjct: 3186 SLKKFDKEHIPEACLKAFKPYQGNPTFDPEFIRSKSTAAAGLCSWCINIVRFYEVYCDV 3244
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 91 RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVD 125
R++P++++CT IDW + PE +L+ V+ RFLE +
Sbjct: 2929 RKFPAVVNCTAIDWFHEWPEDALVSVSARFLEETE 2963
>sp|Q69Z23|DYH17_MOUSE Dynein heavy chain 17, axonemal OS=Mus musculus GN=Dnah17 PE=2 SV=2
Length = 4481
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDI 89
SL ++DK+HIPE LK Y P FDPE I S AA L W + I ++ +++ D+
Sbjct: 3184 SLKKFDKEHIPEACLKAFKPYQGNPTFDPEFIRSKSTAAAGLCSWCINIVRFYEVYCDV 3242
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 91 RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNVLEVQIRLYFA 141
R++P++++CT I+W + PE +L+ V+ RFLE + +E V + I L+ A
Sbjct: 2927 RKFPAVVNCTAINWFHEWPEDALVSVSARFLEETEGIEPEV-KTSISLFMA 2976
>sp|P39057|DYHC_HELCR Dynein beta chain, ciliary OS=Heliocidaris crassispina PE=1 SV=1
Length = 4466
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 35/41 (85%)
Query: 91 RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNV 131
R++P++++CT+IDW + P+++L+ V++RFL+ V++L+ ++
Sbjct: 2947 RKFPAVVNCTSIDWFHEWPQEALVSVSKRFLDEVELLKGDI 2987
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
SL YD+++I E K I Y+N P+F+PE I S+AA L WV+ I K+ ++ D++
Sbjct: 3204 SLINYDEENIHENCQKAIKEYLNDPEFEPEYIKGKSLAAGGLCSWVVNIVKFYNVYCDVE 3263
>sp|Q8TD57|DYH3_HUMAN Dynein heavy chain 3, axonemal OS=Homo sapiens GN=DNAH3 PE=2 SV=1
Length = 4116
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 31 SLYEYDKDHIPEKILKKIT-NYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFK 87
SL YDKD+IP +K+I ++N P+F P I VS A + L KWV A+E Y ++ K
Sbjct: 2842 SLKTYDKDNIPPLTMKRIRERFINHPEFQPAVIKNVSSACEGLCKWVRAMEVYDRVAK 2899
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 77 MAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNVLEV 134
+A+ F++ R +PS+I+C TIDW P +L VA +FLE V++ + +EV
Sbjct: 2564 LAMSPIGDAFRNRLRMFPSLINCCTIDWFQSWPTDALELVANKFLEDVELDDNIRVEV 2621
>sp|Q96DT5|DYH11_HUMAN Dynein heavy chain 11, axonemal OS=Homo sapiens GN=DNAH11 PE=1 SV=3
Length = 4523
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 31 SLYEYDKDHIPEKILKKIT-NYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDI 89
+L YDK+HIPE LK + +Y+ P+F+P I S AA L WV+ I K+ +++ D+
Sbjct: 3261 ALINYDKEHIPENCLKVVNEHYLKDPEFNPNLIRTKSFAAAGLCAWVINIIKFYEVYCDV 3320
Query: 90 Q 90
+
Sbjct: 3321 E 3321
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 91 RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILE 128
R++P+I++CT IDW P+++L+ V+ RF+E +E
Sbjct: 3004 RKFPAIVNCTAIDWFHAWPQEALVSVSRRFIEETKGIE 3041
>sp|Q9NYC9|DYH9_HUMAN Dynein heavy chain 9, axonemal OS=Homo sapiens GN=DNAH9 PE=1 SV=3
Length = 4486
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
SL ++K++I E LK I Y+ P+F+PE + S AA L WV+ I ++ ++F D++
Sbjct: 3224 SLINFNKENIHENCLKAIRPYLQDPEFNPEFVATKSYAAAGLCSWVINIVRFYEVFCDVE 3283
Query: 91 RQYPSIIDCTT 101
+ ++ T
Sbjct: 3284 PKRQALNKATA 3294
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 91 RQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNV 131
R++P+I++CT I W + P+Q+L V+ RFL+ + +E V
Sbjct: 2967 RKFPAIVNCTAIHWFHEWPQQALESVSLRFLQNTEGIEPTV 3007
>sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm OS=Chlamydomonas reinhardtii
GN=ODA4 PE=3 SV=1
Length = 4568
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 76 VMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNVLE 133
V+ F+ RQ+P++++CT DW P ++L+ VA+RFL V +E V E
Sbjct: 3006 VLCFSPVGDKFRIRARQFPALVNCTMFDWFHGWPGEALVSVAQRFLVDVPNMEEVVRE 3063
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 31 SLYEYDKDHIPEKILKKIT-NYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFK 87
SL +DKD++P ++ + +Y++ P F P+ I S A L WV+ I KY ++++
Sbjct: 3277 SLMNFDKDNVPVVCVEVVEKDYISNPGFTPDNIKGKSAACAGLCSWVINICKYFRIYQ 3334
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 36 DKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQRQYPS 95
D++ +P+ K + N +NLP F+ I S AA L++WV+ I +K IQ P
Sbjct: 3450 DENLVPDCNFKYVENLINLPHFNKNAIQKKSKAAAGLAEWVLNI---TSFYKIIQNILPK 3506
Query: 96 IIDCTTIDWILDCPEQSLMEVAERF 120
I +LD ++ L E E+
Sbjct: 3507 RI-------LLDNTKKGLEEANEKL 3524
>sp|Q39610|DYHA_CHLRE Dynein alpha chain, flagellar outer arm OS=Chlamydomonas reinhardtii
GN=ODA11 PE=3 SV=2
Length = 4499
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 86 FKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNV 131
F+ +++ + + T IDW PE SL VA+RFL+ VD+ E V
Sbjct: 2854 FRVRSQRFLATVTSTVIDWFQPWPESSLFSVAKRFLDEVDLGEDAV 2899
>sp|Q8TE73|DYH5_HUMAN Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3
Length = 4624
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 76 VMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDI 126
V+ + F++ ++P++I TIDW P+ +L+ V+E FL + DI
Sbjct: 3085 VLCFSPVGEKFRNRALKFPALISGCTIDWFSRWPKDALVAVSEHFLTSYDI 3135
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDI 89
+L ++ KD I E++++ ++ Y +PD++ E V L W A+ + + K++
Sbjct: 3365 NLQQFPKDTINEEVIEFLSPYFEMPDYNIETAKRVCGNVAGLCSWTKAMASFFSINKEV 3423
>sp|Q9SMH3|DYH1A_CHLRE Dynein-1-alpha heavy chain, flagellar inner arm I1 complex
OS=Chlamydomonas reinhardtii GN=DHC1 PE=1 SV=1
Length = 4625
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 76 VMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFL 121
V+A+ + + R +P +++ T IDW PEQ+L VA FL
Sbjct: 3072 VLAMSPVGETLRSRCRNFPGMVNNTVIDWFEPWPEQALTSVASVFL 3117
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 31 SLYEYDKDHIPEKILKKITNYVNLPD--FDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKD 88
SL E+DKD + +K +KK+ Y P + + +S A L KWV+A+ Y + +
Sbjct: 3337 SLVEFDKDSLTDKQVKKVKEYFKDPKAPLTYDSLRAISTAGAGLLKWVLAMVNYNNVART 3396
Query: 89 IQ 90
++
Sbjct: 3397 VE 3398
>sp|Q5DX34|RPGRH_CAEEL X-linked retinitis pigmentosa GTPase regulator homolog
OS=Caenorhabditis elegans GN=glo-4 PE=1 SV=1
Length = 1392
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 11/53 (20%)
Query: 18 VRFPNYRKNCTRISLYEYDKDHIPEKIL-----------KKITNYVNLPDFDP 59
+ P+Y + C RI++ D+ P +IL KKI+N+ NLP+F P
Sbjct: 652 ISLPSYHEMCLRIAITNSDRFPRPCQILSLVSSIHILSEKKISNHANLPNFLP 704
>sp|Q8IVF4|DYH10_HUMAN Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4
Length = 4471
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 76 VMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFL 121
V+ + + R +P +++ T IDW + P Q+L VA+ FL
Sbjct: 2930 VLGMSPVGDTLRTWCRNFPGMVNNTGIDWFMPWPPQALHAVAKSFL 2975
>sp|Q8VHE6|DYH5_MOUSE Dynein heavy chain 5, axonemal OS=Mus musculus GN=Dnah5 PE=1 SV=2
Length = 4621
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 76 VMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDI 126
V+ + F++ ++P++I TIDW P+ +L+ V+E FL + I
Sbjct: 3082 VLCFSPVGEKFRNRALKFPALISGCTIDWFSRWPKDALVAVSEHFLSSYTI 3132
>sp|Q19020|DYHC_CAEEL Dynein heavy chain, cytoplasmic OS=Caenorhabditis elegans GN=dhc-1
PE=3 SV=1
Length = 4568
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 28 TRISLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFK 87
TRI ++D + + +ILK++ Y+ PD++ +++ SVA + KW A Y+ +
Sbjct: 3293 TRI--LQFDTELLTPEILKQMEKYIQNPDWEFDKVNRASVACGPMVKWARAQLLYSTMLH 3350
Query: 88 DIQ 90
++
Sbjct: 3351 KVE 3353
>sp|Q96JB1|DYH8_HUMAN Dynein heavy chain 8, axonemal OS=Homo sapiens GN=DNAH8 PE=1 SV=2
Length = 4490
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 55 PDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLM 114
P FD +S + K+L V+ + F+ ++P +I T+DW P ++L+
Sbjct: 2929 PTFDNLYEYFISRSRKNLHV-VLCFSPVGEKFRARSLKFPGLISGCTMDWFSRWPREALI 2987
Query: 115 EVAERFLETVDILETNVLEVQI 136
VA FL +I+ ++ ++ Q+
Sbjct: 2988 AVASYFLSDYNIVCSSEIKRQV 3009
>sp|P75270|Y517_MYCPN Uncharacterized protein MG342 homolog OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=MPN_517 PE=4 SV=1
Length = 166
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 34 EYDKDHIPEKI---LKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
+ +KDH PEKI ++K+ ++ L PE G V AK+ W+ +Y +
Sbjct: 47 DLEKDHFPEKIKSLVRKLHDHKTLIFVTPEHNGFVPAFAKNTIDWMTRDTQYGK--NQFL 104
Query: 91 RQYPSIIDCTT 101
++ II C T
Sbjct: 105 KELDGIICCVT 115
>sp|Q39575|DYHG_CHLRE Dynein gamma chain, flagellar outer arm OS=Chlamydomonas reinhardtii
GN=ODA2 PE=1 SV=1
Length = 4485
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 76 VMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLE 122
V+ F +Q+P +I+ TIDW P++ L V+ +F++
Sbjct: 2928 VLCFSPVGAKFARRAQQFPGLINGCTIDWFCPGPKKRLTSVSGKFID 2974
>sp|P37276|DYHC_DROME Dynein heavy chain, cytoplasmic OS=Drosophila melanogaster GN=Dhc64C
PE=2 SV=2
Length = 4639
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 24 RKNCTRISLYEYDKDHIPEKILKKI-TNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKY 82
R+N + + ++I + + +K+ + Y++ PD++ E++ S+A + KW +A +Y
Sbjct: 3329 RENFINSIVSNFGTENITDDVREKMKSKYLSNPDYNFEKVNRASMACGPMVKWAIAQIEY 3388
Query: 83 AQLFKDIQ 90
A + K ++
Sbjct: 3389 ADMLKRVE 3396
>sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis
thaliana GN=At5g66900 PE=3 SV=1
Length = 809
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 42 EKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQRQYPSIIDC-- 99
E +L+KI N E +G VS+ +SL+ W +E +++ K + + YP++++C
Sbjct: 344 EDLLQKILKRCNGFPIVIEVVG-VSLKGRSLNTWKGQVESWSEGEKILGKPYPTVLECLQ 402
Query: 100 TTIDWILDCPEQSLMEVAERFLETVDILETNVLEVQIRLY 139
+ D + ++ +++ FLE I + ++++ + LY
Sbjct: 403 PSFDALDPNLKECFLDMGS-FLEDQKIRASVIIDMWVELY 441
>sp|Q662B4|SYL_BORGA Leucine--tRNA ligase OS=Borrelia garinii (strain PBi) GN=leuS PE=3
SV=1
Length = 840
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 52 VNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQ-LFKDIQR-QYPSIIDCTTIDWI 105
+ PD E G +V K L +WV+ I KYA+ L D++ ++P + +WI
Sbjct: 175 IQTPDGPKSERGFHNVEKKYLRQWVLKITKYAERLLNDLEELEWPESVKEMQRNWI 230
>sp|O22025|CFXQ_CYAME Protein cfxQ homolog OS=Cyanidioschyzon merolae GN=cfxQ PE=3 SV=2
Length = 293
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 47 KITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQR--QYPSIIDCTTIDW 104
++ N+VN PD+ PEE+ M+ ++ M E + IQR + P + ++
Sbjct: 193 RVANHVNFPDYTPEELLMIGKIMLQEQQYQMTPEAEKVFLQYIQRRMEQPHFANARSVRN 252
Query: 105 ILD 107
LD
Sbjct: 253 ALD 255
>sp|Q1MTR1|IRC3_SCHPO Putative mitochondrial ATP-dependent helicase irc3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=irc3 PE=3 SV=2
Length = 606
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 42 EKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQRQYPSIIDCTT 101
E K N + PD+DP+ G+ SV W + K ++ +I+ + SI + +T
Sbjct: 395 ENFYNKSKNSLANPDYDPKIYGLQSVL------WYSKLRKLIEMMDNIKNKDRSIFNLST 448
Query: 102 IDWILDCPEQSLMEVAERFLETVDILETN 130
W+ + FL+ V I++TN
Sbjct: 449 NAWV----AVGMGRYVLSFLQKVLIIDTN 473
>sp|P40976|LYS2_SCHPO L-aminoadipate-semialdehyde dehydrogenase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lys1 PE=1 SV=3
Length = 1419
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 19 RFPNYRKNCTRISLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMA 78
R PN R+N I+L DKD P + + +N DFD A +S V
Sbjct: 763 RHPNVREN---ITLVRRDKDEEPTLVAYIVPQGLNKDDFDS--------ATESEDIVVNG 811
Query: 79 IEKYAQLFKDIQRQY 93
++KY +L DI R+Y
Sbjct: 812 LKKYRKLIHDI-REY 825
>sp|O22034|CFXQ2_CYACA Protein cfxQ homolog OS=Cyanidium caldarium GN=cfxQ PE=3 SV=1
Length = 286
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 47 KITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQR--QYPSIIDCTTIDW 104
++ N+VN PD+ PEE+ M+ ++ E + IQR Q P + ++
Sbjct: 186 RVANHVNFPDYTPEELLMIGKIMLQEQQYQFTPEAEEVFLQYIQRRMQQPHFANARSVRN 245
Query: 105 ILD 107
LD
Sbjct: 246 ALD 248
>sp|P47584|Y342_MYCGE Uncharacterized protein MG342 OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=MG342 PE=4 SV=1
Length = 168
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 4 TMVLYYATGFSTAKVRFPNYRKN---CTRISLYEYDKD---------HIPEKI---LKKI 48
+++L + + +F N K+ C I L +Y D + P+KI ++KI
Sbjct: 7 SLILMLSNSQHSINRKFANELKHSLSCELIELKDYQVDFYSVDLEATNFPDKIKTLVRKI 66
Query: 49 TNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYA--QLFKDIQRQYPSIIDCTTIDWIL 106
+ NL PE G + AK++ W+ E+Y Q K + +I C T
Sbjct: 67 KEHSNLIFVTPEHNGFIPAFAKNIIDWMTRDEQYGRNQFLKGLN----GVICCVT--PAT 120
Query: 107 DCPEQSLMEVAERFL 121
++++E+ ++FL
Sbjct: 121 AGGGKTVLELLDKFL 135
>sp|Q8IBG1|DYHC1_PLAF7 Dynein heavy chain-like protein MAL7P1.162 OS=Plasmodium falciparum
(isolate 3D7) GN=MAL7P1.162 PE=2 SV=2
Length = 4985
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 36 DKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
DK + + +I +N D+D E I S AA L+KWV ++ + + + +Q
Sbjct: 3557 DKKAVKPQTSSQIKKRINNNDWDVERINKASRAAGPLAKWVESVITFLNILETVQ 3611
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 86 FKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFL 121
F + Q P++ + IDW D P +L++VA F+
Sbjct: 3271 FANRQATSPALFNRCVIDWFGDWPYSALLQVASEFI 3306
>sp|A1QZ46|SYL_BORT9 Leucine--tRNA ligase OS=Borrelia turicatae (strain 91E135) GN=leuS
PE=3 SV=1
Length = 842
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 52 VNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQ-LFKDIQR-QYPSIIDCTTIDWI 105
+ PD E G V K L +WV+ I +YA+ L KD++ +P + +WI
Sbjct: 175 IQTPDGPRSERGFHKVQRKPLRQWVLKITEYAERLIKDLEEIDWPESVKEMQKNWI 230
>sp|Q91XQ0|DYH8_MOUSE Dynein heavy chain 8, axonemal OS=Mus musculus GN=Dnahc8 PE=2 SV=2
Length = 4731
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 76 VMAIEKYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFL 121
V+ + F+ ++P +I T+DW P+++L+ VA FL
Sbjct: 3190 VLCFSPVGEKFRARSLKFPGLISGCTMDWFSRWPKEALIAVASYFL 3235
>sp|Q0D2K2|KLH30_HUMAN Kelch-like protein 30 OS=Homo sapiens GN=KLHL30 PE=2 SV=3
Length = 578
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 14 STAKVRFPNYRKNCTRISLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLS 73
+ A++ FP+ +K C R + D N + + +F E+ G++ VAAK+
Sbjct: 109 TAARLHFPSVQKVCGRYLQQQLDA-----------ANCLGICEFG-EQQGLLGVAAKA-- 154
Query: 74 KWVMAIEKYAQLFKD---IQRQYPSIIDCTTIDWILDCPEQSLMEVAERFL 121
W E + + ++ +Q ++ C D + PEQS +E R++
Sbjct: 155 -WAFLRENFEAVAREDEFLQLPRERLVTCLAGDLLQVQPEQSRLEALMRWV 204
>sp|B2RZW1|SYL_BORHD Leucine--tRNA ligase OS=Borrelia hermsii (strain DAH) GN=leuS PE=3
SV=1
Length = 842
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 52 VNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQ-LFKDIQR-QYPSIIDCTTIDWI 105
+ PD E G V K L +W++ I +YA+ L KD++ +P + +WI
Sbjct: 175 IQTPDGPRSERGFHKVKRKPLRQWILKITEYAERLIKDLEEIDWPESVKEMQKNWI 230
>sp|Q0SNR0|SYL_BORAP Leucine--tRNA ligase OS=Borrelia afzelii (strain PKo) GN=leuS PE=3
SV=1
Length = 840
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 52 VNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQ-LFKDIQR-QYPSIIDCTTIDWI 105
+ P+ E G +V K L +WV+ I KYA+ L D++ ++P + +WI
Sbjct: 175 IQTPNGPKSERGFHNVEKKYLRQWVLKITKYAERLLNDLEELEWPESVKEMQRNWI 230
>sp|B5RR67|SYL_BORRA Leucine--tRNA ligase OS=Borrelia recurrentis (strain A1) GN=leuS
PE=3 SV=1
Length = 842
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 52 VNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQ-LFKDIQR-QYPSIIDCTTIDWI 105
+ PD E G V K L +W++ I KYA+ L +D++ +P + +WI
Sbjct: 175 IQTPDGPRSERGFHKVERKPLRQWLLKITKYAERLIRDLEEVDWPDSVKEMQKNWI 230
>sp|B5RL76|SYL_BORDL Leucine--tRNA ligase OS=Borrelia duttonii (strain Ly) GN=leuS PE=3
SV=1
Length = 842
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 52 VNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQ-LFKDIQR-QYPSIIDCTTIDWI 105
+ PD E G V K L +W++ I KYA+ L +D++ +P + +WI
Sbjct: 175 IQTPDGPRSERGFHKVERKPLRQWLLKITKYAERLIRDLEEVDWPDSVKEMQKNWI 230
>sp|Q14204|DYHC1_HUMAN Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1
SV=5
Length = 4646
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 38 DHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
D I EK+ K NY++ P ++ E + S+A + KW +A YA + K ++
Sbjct: 3361 DAIREKMKK---NYMSNPSYNYEIVNRASLACGPMVKWAIAQLNYADMLKRVE 3410
>sp|P38650|DYHC1_RAT Cytoplasmic dynein 1 heavy chain 1 OS=Rattus norvegicus GN=Dync1h1
PE=1 SV=1
Length = 4644
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 38 DHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
D I EK+ K NY++ P ++ E + S+A + KW +A YA + K ++
Sbjct: 3359 DAIREKMKK---NYMSNPSYNYEIVNRASLACGPMVKWAIAQLNYADMLKRVE 3408
>sp|Q9JHU4|DYHC1_MOUSE Cytoplasmic dynein 1 heavy chain 1 OS=Mus musculus GN=Dync1h1 PE=1
SV=2
Length = 4644
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 38 DHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
D I EK+ K NY++ P ++ E + S+A + KW +A YA + K ++
Sbjct: 3359 DAIREKMKK---NYMSNPSYNYEIVNRASLACGPMVKWAIAQLNYADMLKRVE 3408
>sp|O51267|SYL_BORBU Leucine--tRNA ligase OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=leuS PE=3 SV=1
Length = 840
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 56 DFDPEEIGMVSVAAKSLSKWVMAIEKYAQ-LFKDIQR-QYPSIIDCTTIDWI 105
D E G SV K L +WV+ I KYA+ L D++ ++P + +WI
Sbjct: 179 DGPKSERGSYSVEKKYLRQWVLKITKYAERLLDDLEELEWPESVKEMQRNWI 230
>sp|B7J1H9|SYL_BORBZ Leucine--tRNA ligase OS=Borrelia burgdorferi (strain ZS7) GN=leuS
PE=3 SV=1
Length = 840
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 56 DFDPEEIGMVSVAAKSLSKWVMAIEKYAQ-LFKDIQR-QYPSIIDCTTIDWI 105
D E G SV K L +WV+ I KYA+ L D++ ++P + +WI
Sbjct: 179 DGPKSERGSYSVEKKYLRQWVLKITKYAERLLDDLEELEWPESVKEMQRNWI 230
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,033,934
Number of Sequences: 539616
Number of extensions: 1788239
Number of successful extensions: 5447
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 5359
Number of HSP's gapped (non-prelim): 113
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)