Query psy17141
Match_columns 141
No_of_seqs 139 out of 1254
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 23:00:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rr7_A Dynein heavy chain 9; m 99.9 1.4E-25 4.8E-30 162.3 -3.0 83 11-98 70-154 (155)
2 3err_A Fusion protein of micro 99.8 1.7E-20 6E-25 158.1 7.0 91 5-100 99-193 (536)
3 4akg_A Glutathione S-transfera 98.3 2.3E-07 7.7E-12 89.8 3.5 88 36-123 1675-1791(2695)
4 3vkg_A Dynein heavy chain, cyt 98.1 1.8E-07 6E-12 91.3 -1.8 86 38-123 1714-1828(3245)
5 3vkg_A Dynein heavy chain, cyt 86.8 0.74 2.5E-05 46.2 5.3 51 90-140 2010-2074(3245)
6 3d5a_X RF1, peptide chain rele 69.6 28 0.00096 27.6 8.5 50 44-93 11-62 (354)
7 1gqe_A Release factor 2, RF2; 62.5 40 0.0014 26.9 8.1 52 43-94 32-85 (365)
8 1rq0_A RF-1, peptide chain rel 53.3 22 0.00076 28.1 5.2 38 46-83 6-43 (342)
9 2pjw_H Uncharacterized protein 48.4 49 0.0017 20.9 6.4 48 81-131 36-83 (88)
10 1zbt_A RF-1, peptide chain rel 48.1 21 0.00072 28.5 4.3 50 45-94 26-77 (371)
11 2ld7_B Paired amphipathic heli 37.5 9.4 0.00032 23.4 0.6 36 13-53 15-57 (75)
12 3kz5_E Protein SOPB; partition 33.9 28 0.00096 19.8 2.2 21 33-53 25-45 (52)
13 2kkp_A Phage integrase; SAM-li 31.0 89 0.003 18.8 5.1 43 35-77 48-90 (117)
14 2key_A Putative phage integras 30.1 92 0.0032 18.7 4.8 41 37-77 49-90 (112)
15 3ghg_A Fibrinogen alpha chain; 28.8 1E+02 0.0035 25.9 5.6 32 104-135 131-162 (562)
16 3nrw_A Phage integrase/site-sp 23.4 1.4E+02 0.0047 18.4 4.7 42 37-78 51-92 (117)
17 2w6a_A ARF GTPase-activating p 22.2 1.3E+02 0.0043 17.6 4.5 11 113-123 22-32 (63)
18 1ygt_A Cytoplasmic dynein ligh 21.8 92 0.0031 19.9 3.4 35 34-68 9-43 (111)
19 1ic2_A Tropomyosin alpha chain 21.0 1.5E+02 0.005 17.9 6.1 30 109-138 39-71 (81)
No 1
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii}
Probab=99.89 E-value=1.4e-25 Score=162.32 Aligned_cols=83 Identities=31% Similarity=0.616 Sum_probs=79.6
Q ss_pred CChHHHHhcc--HhhhcccccccccccccCCCCHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHhhhhhhHHHHHH
Q psy17141 11 TGFSTAKVRF--PNYRKNCTRISLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKD 88 (141)
Q Consensus 11 ~~W~~ak~~l--~~f~~~~~~~~L~~fd~d~i~~~~l~~i~~~l~~p~F~~e~i~~~S~Aa~~l~~WV~a~~~y~~v~~~ 88 (141)
++|.++|++| ++|++ +|.+||+|+|++.++++|++|+.+|+|+++.+.++|.||++||.||+||+.|+.|+++
T Consensus 70 ~~W~~~k~~l~~~~Fl~-----~L~~fdkd~I~~~~~~~l~~yl~~p~f~~e~v~~~S~Aa~~Lc~WV~A~~~y~~v~k~ 144 (155)
T 2rr7_A 70 DYWEASKKMLMEFDFLD-----SLRKFDKDHIPPEVIVKIRPFAQDPEFQPKVIEKQSVACAGLCSWVIALEKYDKVIKE 144 (155)
T ss_dssp CHHHHHHHHHSCSSHHH-----HHHHSCGGGCCHHHHTTSTTTSSCTTSSHHHHHHHCTTTHHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHhchHHHHH-----HHHhcCcccChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999998 79999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcchhhHHH
Q psy17141 89 IQRQYPSIID 98 (141)
Q Consensus 89 v~Pk~~~L~~ 98 (141)
|.|++.+|.+
T Consensus 145 V~Pkr~~l~~ 154 (155)
T 2rr7_A 145 VEPKRQKLRE 154 (155)
T ss_dssp SSCCCSSSSC
T ss_pred HhhHHHHHhh
Confidence 9999988764
No 2
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.81 E-value=1.7e-20 Score=158.06 Aligned_cols=91 Identities=21% Similarity=0.421 Sum_probs=83.8
Q ss_pred eeccc-cCChHHHHhcc--HhhhcccccccccccccCCCCHHHHHHHH-hhhCCCCCCHHHHHHHHHHHHhhchHHhhhh
Q psy17141 5 MVLYY-ATGFSTAKVRF--PNYRKNCTRISLYEYDKDHIPEKILKKIT-NYVNLPDFDPEEIGMVSVAAKSLSKWVMAIE 80 (141)
Q Consensus 5 ~~~~~-~~~W~~ak~~l--~~f~~~~~~~~L~~fd~d~i~~~~l~~i~-~~l~~p~F~~e~i~~~S~Aa~~l~~WV~a~~ 80 (141)
++++. +++|.++|++| ++|++ +|.+||+|+|++.++++|+ +|+.+|+|+|+.+.++|.||++||.||+||+
T Consensus 99 iLl~~~~~~W~~ak~~L~~~~Fl~-----~L~~fdkd~I~~~~~~~l~~~y~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~ 173 (536)
T 3err_A 99 LLLGESTTDWKQIRSIIMRENFIP-----TIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQL 173 (536)
T ss_dssp HHTTCSCCCHHHHTTGGGCTTHHH-----HHHHCCGGGCCHHHHHHHHHHTTTSTTCSHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHhhccCcHHHHH-----HHHhcCcccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444 58999999988 79999 9999999999999999997 7999999999999999999999999999999
Q ss_pred hhHHHHHHHhcchhhHHHHH
Q psy17141 81 KYAQLFKDIQRQYPSIIDCT 100 (141)
Q Consensus 81 ~y~~v~~~v~Pk~~~L~~~~ 100 (141)
.|+.+.++|.|++.++.+++
T Consensus 174 ~Y~~l~~eV~pLk~eLk~lE 193 (536)
T 3err_A 174 NYADMLKRVEPLRNELQKLE 193 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhhhHHHHHHHH
Confidence 99999999999999888653
No 3
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.32 E-value=2.3e-07 Score=89.75 Aligned_cols=88 Identities=15% Similarity=0.251 Sum_probs=74.3
Q ss_pred ccCCCCHHHHHHHHhhhCCCC----CCHHHHHHHH-------------------------HHHHhhchHHhhhhhhHHHH
Q psy17141 36 DKDHIPEKILKKITNYVNLPD----FDPEEIGMVS-------------------------VAAKSLSKWVMAIEKYAQLF 86 (141)
Q Consensus 36 d~d~i~~~~l~~i~~~l~~p~----F~~e~i~~~S-------------------------~Aa~~l~~WV~a~~~y~~v~ 86 (141)
|..-..++.++.|+.+|++++ |..|+...+. ..+..++|.|++|+|.|+.+
T Consensus 1675 D~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~~~~~g~~~~t~~~l~~~Fi~rvr~NLHvVL~mSP~g~~f 1754 (2695)
T 4akg_A 1675 ESNILETAFLERMNTLLANADIPDLFQGEEYDKLLNNLRNKTRSLGLLLDTEQELYDWFVGEIAKNLHVVFTICDPTNNK 1754 (2695)
T ss_dssp TTTCCSHHHHHHHHHHHHSSSCTTTSCTHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHCEEEEEESCTTSHH
T ss_pred ccccccHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHhHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCChHH
Confidence 334467899999999998866 8877755442 23566788999999999999
Q ss_pred HHHhcchhhHHHHHHHhHHhhchHHHHHHHHHHHHHH
Q psy17141 87 KDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLET 123 (141)
Q Consensus 87 ~~v~Pk~~~L~~~~~~~~~l~~~~~~L~~V~~~l~~l 123 (141)
+.+..++|+|.++|+++|+.+||+++|..|+.++.+.
T Consensus 1755 r~R~r~fPaLvn~ctIdWf~~Wp~eAL~~Va~~fl~~ 1791 (2695)
T 4akg_A 1755 SSAMISSPALFNRCIINWMGDWDTKTMSQVANNMVDV 1791 (2695)
T ss_dssp HHHHHHSHHHHHHSEEEECCSCCHHHHHHHHHHHSCS
T ss_pred HHHHHhChHhhcceeEeecCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999988754
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.12 E-value=1.8e-07 Score=91.34 Aligned_cols=86 Identities=14% Similarity=0.338 Sum_probs=65.7
Q ss_pred CCCCHHHHHHHHhhhCCCC----CCHHHHHHH-------------------------HHHHHhhchHHhhhhhhHHHHHH
Q psy17141 38 DHIPEKILKKITNYVNLPD----FDPEEIGMV-------------------------SVAAKSLSKWVMAIEKYAQLFKD 88 (141)
Q Consensus 38 d~i~~~~l~~i~~~l~~p~----F~~e~i~~~-------------------------S~Aa~~l~~WV~a~~~y~~v~~~ 88 (141)
.-..+.+++.|+.+|++++ |..|+...+ ...+..++|.|++|+|.|+.||.
T Consensus 1714 qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~~i~~~~r~~a~~~g~~~dt~~~l~~~Fi~rvr~NLHvVL~mSPvg~~fR~ 1793 (3245)
T 3vkg_A 1714 NVLESSFLERMNTLLAGGEVPGLFEGEEFTALMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHN 1793 (3245)
T ss_dssp GCSSTHHHHHHHHHHHHSCCTTSSCTTTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHTTTCCEEEEECTTSTTTTC
T ss_pred ccccHHHHHHHHHHhccCCccccCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCCHHHHH
Confidence 3356677888888777654 665554433 23456678899999999999999
Q ss_pred HhcchhhHHHHHHHhHHhhchHHHHHHHHHHHHHH
Q psy17141 89 IQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLET 123 (141)
Q Consensus 89 v~Pk~~~L~~~~~~~~~l~~~~~~L~~V~~~l~~l 123 (141)
+..++|+|.++|+++|+.+||+++|..|+.++...
T Consensus 1794 R~r~fPaLvncctIDWf~~Wp~eAL~~Va~~fl~~ 1828 (3245)
T 3vkg_A 1794 RSATSPALFNRCVLDWFGEWSPEALFQVGSEFTRN 1828 (3245)
T ss_dssp ----CTHHHHHSEEEEEESCCHHHHHHHHHHHTTT
T ss_pred HHHHChHHhhCceeeecCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999988653
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.79 E-value=0.74 Score=46.16 Aligned_cols=51 Identities=6% Similarity=-0.007 Sum_probs=39.7
Q ss_pred hcchhhHHHHH----HHhHHhhchHHHHHHHHHHHHHHhhh----------hHHHHHHHHHhhhc
Q psy17141 90 QRQYPSIIDCT----TIDWILDCPEQSLMEVAERFLETVDI----------LETNVLEVQIRLYF 140 (141)
Q Consensus 90 ~Pk~~~L~~~~----~~~~~l~~~~~~L~~V~~~l~~l~~~----------~~~~~~~~~~rl~~ 140 (141)
+||+.+|.+++ .++..|...++.|.+|++++..+++. ++.+++.|++||.-
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999998885 35677888899999999998888753 56677888888764
No 6
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=69.64 E-value=28 Score=27.64 Aligned_cols=50 Identities=12% Similarity=0.266 Sum_probs=39.7
Q ss_pred HHHHHHhhhCCCCC--CHHHHHHHHHHHHhhchHHhhhhhhHHHHHHHhcch
Q psy17141 44 ILKKITNYVNLPDF--DPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQRQY 93 (141)
Q Consensus 44 ~l~~i~~~l~~p~F--~~e~i~~~S~Aa~~l~~WV~a~~~y~~v~~~v~Pk~ 93 (141)
-++.+...+.+|+| +++...+.++.-..|-.+|.....|.....++.-..
T Consensus 11 r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~ 62 (354)
T 3d5a_X 11 EYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAE 62 (354)
T ss_dssp HHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778899996 789999999999999999988888877766554433
No 7
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=62.51 E-value=40 Score=26.88 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=41.2
Q ss_pred HHHHHHHhhhCCCCC--CHHHHHHHHHHHHhhchHHhhhhhhHHHHHHHhcchh
Q psy17141 43 KILKKITNYVNLPDF--DPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQRQYP 94 (141)
Q Consensus 43 ~~l~~i~~~l~~p~F--~~e~i~~~S~Aa~~l~~WV~a~~~y~~v~~~v~Pk~~ 94 (141)
.-+..|...+.+|+| +++...++++.-..|-.+|.....|.....+..-...
T Consensus 32 ~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e 85 (365)
T 1gqe_A 32 ERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLE 85 (365)
T ss_dssp HHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778899997 8899999999999999999888888877766655443
No 8
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=53.33 E-value=22 Score=28.11 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=31.8
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhhchHHhhhhhhH
Q psy17141 46 KKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYA 83 (141)
Q Consensus 46 ~~i~~~l~~p~F~~e~i~~~S~Aa~~l~~WV~a~~~y~ 83 (141)
..|...+.+|+|+++...+.++.-..|-.+|.....|.
T Consensus 6 ~el~~~~~~p~~d~~~~~~~~ke~~~l~~~v~~~~~~~ 43 (342)
T 1rq0_A 6 KEIEKLLARPDLTPEQMKNYGMEYAKIEEIENITNRIK 43 (342)
T ss_dssp THHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999999999888888877776
No 9
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=48.38 E-value=49 Score=20.86 Aligned_cols=48 Identities=2% Similarity=0.131 Sum_probs=35.2
Q ss_pred hhHHHHHHHhcchhhHHHHHHHhHHhhchHHHHHHHHHHHHHHhhhhHHHH
Q psy17141 81 KYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNV 131 (141)
Q Consensus 81 ~y~~v~~~v~Pk~~~L~~~~~~~~~l~~~~~~L~~V~~~l~~l~~~~~~~~ 131 (141)
...+.|..|-|.||+|... ++.+- .++++|..+.+++......++.=+
T Consensus 36 eiq~LY~~v~~lRPkL~~l--i~kys-qKk~eL~~Ln~kl~~a~~~Yd~ll 83 (88)
T 2pjw_H 36 HIGDMYGSVTPLRPQVTRM--LGKYA-KEKEDMLSLRQVLANAERSYNQLM 83 (88)
T ss_dssp HHHHHHHHHTTHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688899999999985 33333 367789999999988877765544
No 10
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=48.10 E-value=21 Score=28.55 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=22.3
Q ss_pred HHHHHhhhCCCCC--CHHHHHHHHHHHHhhchHHhhhhhhHHHHHHHhcchh
Q psy17141 45 LKKITNYVNLPDF--DPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQRQYP 94 (141)
Q Consensus 45 l~~i~~~l~~p~F--~~e~i~~~S~Aa~~l~~WV~a~~~y~~v~~~v~Pk~~ 94 (141)
+..+...+.+|+| +++...+.++.-..|-.+|.....|.....++.-...
T Consensus 26 ~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e 77 (371)
T 1zbt_A 26 YEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQE 77 (371)
T ss_dssp HHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566788986 6778888888888888888888888777666554443
No 11
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=37.53 E-value=9.4 Score=23.39 Aligned_cols=36 Identities=11% Similarity=0.462 Sum_probs=25.2
Q ss_pred hHHHHhcc------HhhhcccccccccccccCCCCH-HHHHHHHhhhC
Q psy17141 13 FSTAKVRF------PNYRKNCTRISLYEYDKDHIPE-KILKKITNYVN 53 (141)
Q Consensus 13 W~~ak~~l------~~f~~~~~~~~L~~fd~d~i~~-~~l~~i~~~l~ 53 (141)
.+.+|+.+ ..||+ -|.-|..+.|+. +.+.++..++.
T Consensus 15 f~kVK~~l~~~~~Y~eFLk-----~lnlf~q~~Id~~eLv~~V~~~lg 57 (75)
T 2ld7_B 15 FDKVRKALRSAEAYENFLR-----CLVIFNQEVISRAELVQLVSPFLG 57 (75)
T ss_dssp HHHHHHHHCSHHHHHHHHH-----HHHHHHTTCSCHHHHHHHTHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHH-----HHHHhhhcCcCHHHHHHHHHHHHc
Confidence 34556555 57888 888898888874 55666677774
No 12
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=33.87 E-value=28 Score=19.80 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=16.9
Q ss_pred cccccCCCCHHHHHHHHhhhC
Q psy17141 33 YEYDKDHIPEKILKKITNYVN 53 (141)
Q Consensus 33 ~~fd~d~i~~~~l~~i~~~l~ 53 (141)
.+.|+..+|..++++|+.+|.
T Consensus 25 f~Ld~~~iP~~~IeKIE~lL~ 45 (52)
T 3kz5_E 25 LNLDRSRVPTECIEKIEAILK 45 (52)
T ss_dssp EEEETTTSCHHHHHHHHHHHH
T ss_pred EEeccccCCHHHHHHHHHHHH
Confidence 345667899999999998774
No 13
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=30.99 E-value=89 Score=18.79 Aligned_cols=43 Identities=5% Similarity=0.047 Sum_probs=25.1
Q ss_pred cccCCCCHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHh
Q psy17141 35 YDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVM 77 (141)
Q Consensus 35 fd~d~i~~~~l~~i~~~l~~p~F~~e~i~~~S~Aa~~l~~WV~ 77 (141)
..-+.|+...+......+...+..+..+.+.-....+++.|+.
T Consensus 48 ~~l~~It~~~i~~~~~~l~~~~~s~~t~~~~~~~l~~~~~~A~ 90 (117)
T 2kkp_A 48 IPLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLHEAMSQAR 90 (117)
T ss_dssp SCTTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEHHHCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3445677766666555444344566666666556666666644
No 14
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=30.08 E-value=92 Score=18.69 Aligned_cols=41 Identities=10% Similarity=-0.022 Sum_probs=28.2
Q ss_pred cCCCCHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhhchHHh
Q psy17141 37 KDHIPEKILKKITNYVNL-PDFDPEEIGMVSVAAKSLSKWVM 77 (141)
Q Consensus 37 ~d~i~~~~l~~i~~~l~~-p~F~~e~i~~~S~Aa~~l~~WV~ 77 (141)
-+.|++..++....++.. .+..+..+.+.-.+..+.+.|+.
T Consensus 49 l~~it~~~i~~~~~~l~~~~~~s~~Ti~~~~~~lr~~~~~a~ 90 (112)
T 2key_A 49 FHELTEDFLRDYLIYMKKTLCNADSTAQRNLSTIKIYVSAAI 90 (112)
T ss_dssp TTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHH
Confidence 456787777776666654 56777777777777777777653
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.85 E-value=1e+02 Score=25.85 Aligned_cols=32 Identities=0% Similarity=-0.074 Sum_probs=21.4
Q ss_pred HHhhchHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy17141 104 WILDCPEQSLMEVAERFLETVDILETNVLEVQ 135 (141)
Q Consensus 104 ~~l~~~~~~L~~V~~~l~~l~~~~~~~~~~~~ 135 (141)
..+...+..|...-.++++|+-.++.+++.|.
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqirsCK 162 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCR 162 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555667777777777777766677777663
No 16
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=23.45 E-value=1.4e+02 Score=18.40 Aligned_cols=42 Identities=10% Similarity=0.115 Sum_probs=30.4
Q ss_pred cCCCCHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHhh
Q psy17141 37 KDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMA 78 (141)
Q Consensus 37 ~d~i~~~~l~~i~~~l~~p~F~~e~i~~~S~Aa~~l~~WV~a 78 (141)
-..|++..+..-..++.+.+..+..+.+.-.+..+.+.|...
T Consensus 51 l~~it~~~i~~y~~~l~~~~~s~~Ti~~~ls~lr~f~~~l~~ 92 (117)
T 3nrw_A 51 MRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKNWLEYLAR 92 (117)
T ss_dssp GGGCCHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356777777665556666678888888888888888888643
No 17
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=22.17 E-value=1.3e+02 Score=17.59 Aligned_cols=11 Identities=9% Similarity=0.117 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy17141 113 LMEVAERFLET 123 (141)
Q Consensus 113 L~~V~~~l~~l 123 (141)
|..-+.++++|
T Consensus 22 LaaSeAkiQQL 32 (63)
T 2w6a_A 22 LATSEAKVQQL 32 (63)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhhHHHHHHH
Confidence 33333333333
No 18
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=21.82 E-value=92 Score=19.93 Aligned_cols=35 Identities=9% Similarity=0.191 Sum_probs=23.9
Q ss_pred ccccCCCCHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q psy17141 34 EYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVA 68 (141)
Q Consensus 34 ~fd~d~i~~~~l~~i~~~l~~p~F~~e~i~~~S~A 68 (141)
.|+.+.+..-+-+-++..+.+..|+++.+...+..
T Consensus 9 ~F~~~~v~~ii~~~l~~~L~~~~Y~~~~~~~~~~~ 43 (111)
T 1ygt_A 9 QFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQ 43 (111)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Confidence 35555555444445567888888999988877654
No 19
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=20.96 E-value=1.5e+02 Score=17.86 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHhh---hhHHHHHHHHHhh
Q psy17141 109 PEQSLMEVAERFLETVD---ILETNVLEVQIRL 138 (141)
Q Consensus 109 ~~~~L~~V~~~l~~l~~---~~~~~~~~~~~rl 138 (141)
.++.+..++.++..++. .+++.+.+++.+|
T Consensus 39 ~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 39 LEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544442 2344444555544
Done!