Query psy17141
Match_columns 141
No_of_seqs 139 out of 1254
Neff 7.6
Searched_HMMs 13730
Date Fri Aug 16 23:00:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17141.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17141hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gqea_ e.38.1.1 (A:) Polypept 73.2 7.9 0.00058 28.9 8.1 56 35-91 22-79 (362)
2 d2isya2 a.76.1.1 (A:65-140) Ir 42.6 7.3 0.00053 22.3 2.2 34 21-59 19-63 (76)
3 d1f5ta2 a.76.1.1 (A:1065-1121) 22.2 22 0.0016 18.8 1.8 36 12-52 4-56 (57)
4 d1a0pa1 a.60.9.1 (A:3-100) Rec 18.2 65 0.0047 18.2 3.6 42 36-77 44-85 (98)
5 d1heka_ a.61.1.5 (A:) EIAV mat 16.2 31 0.0023 20.6 1.6 31 69-99 33-73 (116)
6 d2ev0a2 a.76.1.1 (A:63-136) Ma 13.9 33 0.0024 19.1 1.2 25 39-63 42-66 (74)
7 d1rq0a_ e.38.1.1 (A:) Peptide 13.2 1.1E+02 0.0082 21.9 4.4 32 45-76 5-36 (333)
8 d2b3tb1 e.38.1.1 (B:7-354) Pep 12.7 16 0.0012 26.8 -0.6 45 44-88 5-51 (344)
9 d1nkua_ a.96.1.4 (A:) 3-Methyl 12.5 58 0.0042 21.6 2.4 59 11-77 44-107 (187)
10 d1ijwc_ a.4.1.2 (C:) HIN recom 12.4 53 0.0039 16.6 1.7 40 37-76 3-42 (47)
No 1
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=73.21 E-value=7.9 Score=28.86 Aligned_cols=56 Identities=21% Similarity=0.324 Sum_probs=43.3
Q ss_pred cccCCCCHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhhchHHhhhhhhHHHHHHHhc
Q psy17141 35 YDKDHIPEKILKKITNYVNLPDF--DPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQR 91 (141)
Q Consensus 35 fd~d~i~~~~l~~i~~~l~~p~F--~~e~i~~~S~Aa~~l~~WV~a~~~y~~v~~~v~P 91 (141)
||-+.+. .-++.|...+.+|+| +++...++++.-..|-.+|.....|-....++.-
T Consensus 22 fDld~kk-~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~e 79 (362)
T d1gqea_ 22 LDYDAKK-ERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSG 79 (362)
T ss_dssp TTHHHHH-HHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHH-HHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 467778889999998 8999999999999999998887777776666544
No 2
>d2isya2 a.76.1.1 (A:65-140) Iron-dependent regulator {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=42.58 E-value=7.3 Score=22.29 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=27.0
Q ss_pred HhhhcccccccccccccC-----------CCCHHHHHHHHhhhCCCCCCH
Q psy17141 21 PNYRKNCTRISLYEYDKD-----------HIPEKILKKITNYVNLPDFDP 59 (141)
Q Consensus 21 ~~f~~~~~~~~L~~fd~d-----------~i~~~~l~~i~~~l~~p~F~~ 59 (141)
..||. .+.+++.+ .+++.++++|..++..|.++|
T Consensus 19 e~fL~-----~~lgv~~~~a~~~A~~iEH~is~e~~~~L~~~l~~p~~~P 63 (76)
T d2isya2 19 ERLLV-----DVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSP 63 (76)
T ss_dssp HHHHH-----HTTCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTSCCBCT
T ss_pred HHHHH-----HHcCCCHHHHHHHHHHHhccCCHHHHHHHHHHhCCCCCCC
Confidence 46775 67777642 489999999999999998776
No 3
>d1f5ta2 a.76.1.1 (A:1065-1121) Diphtheria toxin repressor (DtxR) {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=22.23 E-value=22 Score=18.83 Aligned_cols=36 Identities=8% Similarity=0.256 Sum_probs=22.3
Q ss_pred ChHHHHhcc------HhhhcccccccccccccCC-----------CCHHHHHHHHhhh
Q psy17141 12 GFSTAKVRF------PNYRKNCTRISLYEYDKDH-----------IPEKILKKITNYV 52 (141)
Q Consensus 12 ~W~~ak~~l------~~f~~~~~~~~L~~fd~d~-----------i~~~~l~~i~~~l 52 (141)
++.-|+.++ ..|+. .+.+++.+. +++.++++|..++
T Consensus 4 G~~~A~~i~rrHrlle~fL~-----~~lgv~~~~a~~~A~~iEH~ls~~~~~~l~~~L 56 (57)
T d1f5ta2 4 GRTLATAVMRKHRLAERLLT-----DIIGLDINKVHDEADRWEHVMSDEVERRLVKVL 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----TTSCCCGGGHHHHHHHHTTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhhCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Confidence 345555555 57776 788887643 5666666666554
No 4
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=18.20 E-value=65 Score=18.23 Aligned_cols=42 Identities=7% Similarity=0.023 Sum_probs=23.5
Q ss_pred ccCCCCHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHHh
Q psy17141 36 DKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVM 77 (141)
Q Consensus 36 d~d~i~~~~l~~i~~~l~~p~F~~e~i~~~S~Aa~~l~~WV~ 77 (141)
+-..++...+..--.++.+.++.|..+.+.-.|..+.+.|..
T Consensus 44 ~~~~i~~~~i~~yl~~l~~~g~s~~Ti~r~lsalr~ff~~l~ 85 (98)
T d1a0pa1 44 TLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLY 85 (98)
T ss_dssp CTTTCCHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 344677666655444556667888888887778888888754
No 5
>d1heka_ a.61.1.5 (A:) EIAV matrix antigen {Equine infectious anemia virus, EIAV [TaxId: 11665]}
Probab=16.23 E-value=31 Score=20.59 Aligned_cols=31 Identities=6% Similarity=0.291 Sum_probs=22.3
Q ss_pred HHhhchHHhhhhhhHH----------HHHHHhcchhhHHHH
Q psy17141 69 AKSLSKWVMAIEKYAQ----------LFKDIQRQYPSIIDC 99 (141)
Q Consensus 69 a~~l~~WV~a~~~y~~----------v~~~v~Pk~~~L~~~ 99 (141)
..|+|.|.++.+.... -+|+|.|+...+.+.
T Consensus 33 ~~gncnwalslvdlfhdtn~~kekdwqlrdiiplledv~qt 73 (116)
T d1heka_ 33 TTGNCNWALSLVDLFHDTNFVKEKDWQLRDVIPLLEDVTQT 73 (116)
T ss_dssp CHHHHHHHHHHHHHHTTCCTTTSSCCCHHHHHHHHHHHHTT
T ss_pred ccCcchhHHHHHHHHccccccccccchHHhhhHHHHHHHHH
Confidence 3578999999875433 378888887776653
No 6
>d2ev0a2 a.76.1.1 (A:63-136) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=13.90 E-value=33 Score=19.07 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHhhhCCCCCCHHHHH
Q psy17141 39 HIPEKILKKITNYVNLPDFDPEEIG 63 (141)
Q Consensus 39 ~i~~~~l~~i~~~l~~p~F~~e~i~ 63 (141)
.|++.++.+|..++.-|+-+|+...
T Consensus 42 ~is~~~~~~l~~~l~~~~~~P~~~~ 66 (74)
T d2ev0a2 42 HLSWNSIDRIGDLVQYFEEDDARKK 66 (74)
T ss_dssp GCCHHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCCHHHHHHHHHHHCcchhChHHHH
Confidence 3788888888877776666665444
No 7
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]}
Probab=13.15 E-value=1.1e+02 Score=21.88 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=22.9
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhhchHH
Q psy17141 45 LKKITNYVNLPDFDPEEIGMVSVAAKSLSKWV 76 (141)
Q Consensus 45 l~~i~~~l~~p~F~~e~i~~~S~Aa~~l~~WV 76 (141)
++.|...+++|+|.++.+.+.|+--+.|=.++
T Consensus 5 ~~eLe~~l~dPd~~~d~~~~lske~~~L~~i~ 36 (333)
T d1rq0a_ 5 KKEIEKLLARPDLTPEQMKNYGMEYAKIEEIE 36 (333)
T ss_dssp TTHHHHHHHSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34567788999999998888777655544433
No 8
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]}
Probab=12.67 E-value=16 Score=26.82 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=32.7
Q ss_pred HHHHHHhhhCCCCC--CHHHHHHHHHHHHhhchHHhhhhhhHHHHHH
Q psy17141 44 ILKKITNYVNLPDF--DPEEIGMVSVAAKSLSKWVMAIEKYAQLFKD 88 (141)
Q Consensus 44 ~l~~i~~~l~~p~F--~~e~i~~~S~Aa~~l~~WV~a~~~y~~v~~~ 88 (141)
-++.|...+++|+| +++...++++--..|-.+|.....|.....+
T Consensus 5 R~eELe~~LsdPd~w~D~~kaqkLsKE~s~L~~iV~~~~~l~~~~~d 51 (344)
T d2b3tb1 5 RHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQED 51 (344)
T ss_dssp HHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHhhCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788999998 7888888888887877777766666554443
No 9
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]}
Probab=12.54 E-value=58 Score=21.63 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=37.9
Q ss_pred CChHHHHhccHhhhcccccccccccccCC---CCHHHHHHHHhhhCCCC--CCHHHHHHHHHHHHhhchHHh
Q psy17141 11 TGFSTAKVRFPNYRKNCTRISLYEYDKDH---IPEKILKKITNYVNLPD--FDPEEIGMVSVAAKSLSKWVM 77 (141)
Q Consensus 11 ~~W~~ak~~l~~f~~~~~~~~L~~fd~d~---i~~~~l~~i~~~l~~p~--F~~e~i~~~S~Aa~~l~~WV~ 77 (141)
-+|..+-+--+.|-. ...+||.+. ++++-+ ..++.+|. -+.-+|..+-..|.....+..
T Consensus 44 LsW~~IL~Kr~~fr~-----aF~~Fd~~~vA~~~e~~i---e~Ll~d~~IIRNr~KI~Avi~NAr~~l~i~~ 107 (187)
T d1nkua_ 44 LSWITVLKKRENYRA-----CFHQFDPVKVAAMQEEDV---ERLVQDAGIIRHRGKIQAIIGNARAYLQMEQ 107 (187)
T ss_dssp SCHHHHHHHHHHHHH-----HHTTTCHHHHHTCCHHHH---HHHHTCCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-----HHhCCCHHHHHcCCHHHH---HHHhccCCeeechHHHHHHHHHHHHHHHHHH
Confidence 468766444456666 777888764 566544 46778887 477777776666655555443
No 10
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=12.42 E-value=53 Score=16.63 Aligned_cols=40 Identities=8% Similarity=0.114 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhchHH
Q psy17141 37 KDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWV 76 (141)
Q Consensus 37 ~d~i~~~~l~~i~~~l~~p~F~~e~i~~~S~Aa~~l~~WV 76 (141)
+..++++.++.++..+.++.---+........-..+++|+
T Consensus 3 ~~~lt~~q~~~a~~l~~~G~s~~~iA~~~gVSr~TiYry~ 42 (47)
T d1ijwc_ 3 PRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYF 42 (47)
T ss_dssp CCSSCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHS
T ss_pred CCcCCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHhhC
Done!