RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17141
(141 letters)
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD,
antiparallel coil, motor protein, DSH; NMR
{Chlamydomonas reinhardtii}
Length = 155
Score = 81.9 bits (203), Expect = 5e-21
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 31 SLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDI 89
SL ++DKDHIP +++ KI + P+F P+ I SVA L WV+A+EKY ++ K++
Sbjct: 87 SLRKFDKDHIPPEVIVKIRPFAQDPEFQPKVIEKQSVACAGLCSWVIALEKYDKVIKEV 145
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 56.4 bits (136), Expect = 2e-10
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 86 FKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETN 130
F + P++ + +DW + ++L +V F +D+
Sbjct: 1791 FHNRSATSPALFNRCVLDWFGEWSPEALFQVGSEFTRNLDLENPQ 1835
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 53.3 bits (128), Expect = 3e-09
Identities = 7/52 (13%), Positives = 24/52 (46%)
Query: 86 FKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETNVLEVQIR 137
P++ + I+W+ D +++ +VA ++ + + T+ + ++
Sbjct: 1754 KSSAMISSPALFNRCIINWMGDWDTKTMSQVANNMVDVIPMEFTDFIVPEVN 1805
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 3e-05
Identities = 21/114 (18%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 28 TRISLYEYDKDHIPEKILKKITNYVNLPDFD-PEEIG-----MVSVAAKSLSKWVMAIEK 81
T ISL + P+++ + Y++ D P E+ +S+ A+S+ + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 82 YAQLFKDIQRQYPSIIDCTTIDWILDCPE-QSLMEVAERFLETVDILETNVLEV 134
+ + D + +II+ ++++ +L+ E + + + F + I T +L +
Sbjct: 347 WKHVNCD---KLTTIIE-SSLN-VLEPAEYRKMFDRLSVFPPSAHI-PTILLSL 394
Score = 35.2 bits (80), Expect = 0.004
Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 23/124 (18%)
Query: 21 PNYRKNCTRISLYEYDKDHIPEKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIE 80
YRK R+S++ HIP +L I + ++ D + + + SL
Sbjct: 369 AEYRKMFDRLSVFPPSA-HIPTILLSLI--WFDVIKSDVMVV-VNKLHKYSL-------- 416
Query: 81 KYAQLFKDIQRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILET----NVLEVQI 136
+ K + SI I L ++ + ++ +I +T +++ +
Sbjct: 417 ----VEKQPKESTISIPS---IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 137 RLYF 140
YF
Sbjct: 470 DQYF 473
Score = 29.8 bits (66), Expect = 0.32
Identities = 13/101 (12%), Positives = 36/101 (35%), Gaps = 29/101 (28%)
Query: 33 YEYDKDHIP---EKILKKITNYVNLPDFDPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDI 89
Y+Y KD + + + +FD +++ + + K +++ E+ +
Sbjct: 16 YQY-KDILSVFEDAFVD---------NFDCKDV-------QDMPKSILSKEEIDHIIMSK 58
Query: 90 QRQYPSIIDCTTIDWILDCPEQSLMEVAERFLETVDILETN 130
+ + E+ ++F+E ++L N
Sbjct: 59 DAV-------SGTLRLFWTLLSKQEEMVQKFVE--EVLRIN 90
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 27.6 bits (62), Expect = 1.5
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 29 RISLYEYDKDHIPEKILKKITNYVNLPDFDPEE 61
I+L + + + +KI +T+ + FD E
Sbjct: 237 YITLLD-EPKQLEKKIKSAVTDSEGIVKFDKEN 268
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 26.7 bits (60), Expect = 2.5
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 29 RISLYEYDKDHIPEKILKKITNYVNLPDFDPEE 61
I+L + D I +KI +T+ +D E
Sbjct: 203 YITLLD-DAKTIEKKIKSAVTDSEGTIRYDKEA 234
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix
XRE-family like protei transcription regulator, PSI-2;
2.60A {Staphylococcus aureus subsp}
Length = 111
Score = 25.8 bits (56), Expect = 3.0
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 30 ISLYEYDKDHIPEKILKKITNYVNLP 55
I E D +I + +L K + N+
Sbjct: 53 IQNMEKDSTNIKDSLLSKYMSAFNVK 78
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S;
oxidoreductase, selenium, selenocysteine, seCys,
molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli}
SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Length = 1015
Score = 26.8 bits (59), Expect = 3.1
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 32 LYEYDKDHIPEKILKKITNYVNLPDFDPEEI 62
LY+ + E ++K NY + +E+
Sbjct: 663 LYQSEGGKGVEPLMKMSWNYKQPHEPQSDEV 693
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome,
macromolecular mimicry, translation; 1.81A {Escherichia
coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 26.5 bits (59), Expect = 4.0
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 36 DKDHIPEKILKKITNYVNLPDF--DPEEIGMVSVAAKSLSKWVMAIEKYAQLFKDIQ 90
D D E+ L+++ + PD +PE + SL V +++ Q +D+
Sbjct: 26 DYDAKKER-LEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVS 81
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 25.6 bits (57), Expect = 8.0
Identities = 5/42 (11%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 53 NLPDFDPEEIGMVSVAA-KSLSKWVMAIEKYAQLFKDIQRQY 93
N+ DF+P+ + + + ++++ + + Y
Sbjct: 658 NINDFNPDT-DSIPESELLEVDRYLLN--RLREFTASTINNY 696
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP
domain, MIF4G domain, RNA maturation, RNA export,
nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP:
a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A
3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Length = 771
Score = 25.5 bits (55), Expect = 8.4
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 64 MVSVAAKSLSKWVMAIEKYAQLFKDI---QRQYPSIIDCTTIDWILDCPEQSLMEVAERF 120
++ +AAKS S A+ K+ ++FK + ++ W Q + + ++
Sbjct: 532 LLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNH--PQMIAVLVDKM 589
Query: 121 LET 123
+ T
Sbjct: 590 IRT 592
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 25.3 bits (56), Expect = 8.4
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 29 RISLYEYDKDHIPEKILKKITNYVNLPDFDPEE 61
I L + K+ + +KI + T+ N F +
Sbjct: 213 VIYLDD-PKEVVVKKIRQATTDSFNKIRFASKT 244
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus
solfataricus}
Length = 139
Score = 25.0 bits (55), Expect = 8.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 39 HIPEKILKKITNYVNLPDFDP 59
IPE+I+ K+ NY+ P + P
Sbjct: 112 LIPEEIIDKLYNYLGKPSYCP 132
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.407
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,300,695
Number of extensions: 130865
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 23
Length of query: 141
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,356,429
Effective search space: 248316453
Effective search space used: 248316453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.0 bits)