Query psy17146
Match_columns 1011
No_of_seqs 487 out of 3897
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 23:06:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 1.1E-80 2.4E-85 713.2 57.9 658 28-878 40-762 (1051)
2 KOG3513|consensus 100.0 1.9E-56 4E-61 513.9 56.2 650 28-879 136-864 (1051)
3 KOG4221|consensus 100.0 4.3E-51 9.4E-56 464.2 50.4 648 25-874 39-758 (1381)
4 KOG4222|consensus 100.0 3.1E-50 6.7E-55 454.9 30.3 577 133-876 30-792 (1281)
5 KOG4221|consensus 100.0 1.8E-48 3.8E-53 443.0 39.7 537 146-878 52-661 (1381)
6 KOG4222|consensus 100.0 1E-40 2.2E-45 377.9 30.7 535 18-715 22-608 (1281)
7 KOG4194|consensus 100.0 1.8E-28 3.9E-33 261.0 22.4 287 390-755 503-835 (873)
8 KOG3515|consensus 100.0 1.8E-27 4E-32 268.7 29.8 642 32-799 12-730 (741)
9 KOG4194|consensus 100.0 1.4E-27 3E-32 254.2 25.2 250 312-633 512-802 (873)
10 PHA02785 IL-beta-binding prote 99.9 1.2E-25 2.6E-30 244.4 29.3 250 400-718 36-319 (326)
11 PHA02785 IL-beta-binding prote 99.9 2.5E-24 5.4E-29 234.0 26.1 234 311-613 34-314 (326)
12 KOG3515|consensus 99.9 3.6E-20 7.8E-25 210.0 28.8 494 144-712 18-576 (741)
13 PHA02826 IL-1 receptor-like pr 99.8 4.3E-18 9.3E-23 173.0 18.7 152 551-717 29-214 (227)
14 PHA02826 IL-1 receptor-like pr 99.8 3.4E-18 7.3E-23 173.8 16.6 166 33-221 28-213 (227)
15 cd05762 Ig8_MLCK Eighth immuno 99.6 1.6E-14 3.4E-19 127.1 13.1 91 630-727 1-92 (98)
16 cd05898 Ig5_KIRREL3 Fifth immu 99.6 5.1E-14 1.1E-18 121.7 12.2 96 628-723 1-97 (98)
17 TIGR00864 PCC polycystin catio 99.5 1.1E-07 2.3E-12 122.3 70.0 622 32-728 1346-2041(2740)
18 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 1.8E-13 3.9E-18 117.2 12.5 83 637-725 4-86 (86)
19 cd05851 Ig3_Contactin-1 Third 99.5 9.9E-14 2.1E-18 119.6 10.8 87 629-726 1-88 (88)
20 cd05758 Ig5_KIRREL3-like Fifth 99.5 2.3E-13 5E-18 120.4 12.8 96 628-723 1-97 (98)
21 cd05735 Ig8_DSCAM Eight immuno 99.5 3.3E-13 7.2E-18 116.2 12.3 83 643-727 1-83 (88)
22 cd05892 Ig_Myotilin_C C-termin 99.5 2.2E-13 4.9E-18 112.6 10.4 75 646-725 1-75 (75)
23 cd05737 Ig_Myomesin_like_C C-t 99.5 4.3E-13 9.3E-18 117.1 12.1 84 636-725 9-92 (92)
24 cd05852 Ig5_Contactin-1 Fifth 99.5 2.9E-13 6.2E-18 111.6 9.8 73 643-725 1-73 (73)
25 cd05747 Ig5_Titin_like M5, fif 99.5 6.6E-13 1.4E-17 116.0 12.4 89 629-724 3-92 (92)
26 cd05870 Ig5_NCAM-2 Fifth immun 99.5 7.3E-13 1.6E-17 117.2 12.0 93 628-725 1-98 (98)
27 cd05773 Ig8_hNephrin_like Eigh 99.4 7.2E-13 1.6E-17 119.1 12.0 101 626-728 1-107 (109)
28 cd05745 Ig3_Peroxidasin Third 99.4 4E-13 8.6E-18 111.9 9.4 74 642-725 1-74 (74)
29 cd05732 Ig5_NCAM-1_like Fifth 99.4 9.9E-13 2.2E-17 116.3 12.0 92 629-725 2-96 (96)
30 cd05893 Ig_Palladin_C C-termin 99.4 6.7E-13 1.5E-17 110.0 10.1 75 646-725 1-75 (75)
31 cd05762 Ig8_MLCK Eighth immuno 99.4 1.1E-12 2.3E-17 115.4 12.0 96 28-135 1-97 (98)
32 cd04975 Ig4_SCFR_like Fourth i 99.4 9.3E-13 2E-17 115.8 11.5 88 636-726 11-100 (101)
33 cd05869 Ig5_NCAM-1 Fifth immun 99.4 1.7E-12 3.7E-17 114.5 12.6 92 629-725 2-97 (97)
34 cd05851 Ig3_Contactin-1 Third 99.4 1.1E-12 2.4E-17 113.1 11.0 83 544-627 1-88 (88)
35 cd05730 Ig3_NCAM-1_like Third 99.4 1.8E-12 3.8E-17 114.3 11.6 90 629-726 1-93 (95)
36 PF07679 I-set: Immunoglobulin 99.4 2.5E-12 5.3E-17 112.3 12.4 89 630-725 1-90 (90)
37 cd05867 Ig4_L1-CAM_like Fourth 99.4 2.1E-12 4.5E-17 108.2 11.1 74 643-725 1-75 (76)
38 cd05865 Ig1_NCAM-1 First immun 99.4 2.1E-12 4.5E-17 112.7 11.3 86 635-725 7-95 (96)
39 cd05868 Ig4_NrCAM Fourth immun 99.4 1.9E-12 4.2E-17 108.1 10.6 75 643-725 1-75 (76)
40 cd05863 Ig2_VEGFR-3 Second imm 99.4 1.2E-12 2.6E-17 104.9 8.9 65 646-725 1-65 (67)
41 cd05728 Ig4_Contactin-2-like F 99.4 1.9E-12 4.2E-17 111.0 10.6 81 634-725 5-85 (85)
42 cd05744 Ig_Myotilin_C_like Imm 99.4 2.5E-12 5.5E-17 107.0 10.8 75 646-725 1-75 (75)
43 cd05859 Ig4_PDGFR-alpha Fourth 99.4 1.9E-12 4.1E-17 114.1 10.2 87 637-726 12-100 (101)
44 cd05723 Ig4_Neogenin Fourth im 99.4 2.7E-12 5.8E-17 105.8 10.3 71 645-725 1-71 (71)
45 cd05748 Ig_Titin_like Immunogl 99.4 3.5E-12 7.7E-17 106.3 11.2 74 645-725 1-74 (74)
46 cd04972 Ig_TrkABC_d4 Fourth do 99.4 5E-12 1.1E-16 109.9 12.6 85 634-725 6-90 (90)
47 cd05891 Ig_M-protein_C C-termi 99.4 4.7E-12 1E-16 110.2 12.1 85 635-725 8-92 (92)
48 cd05854 Ig6_Contactin-2 Sixth 99.4 4.2E-12 9.2E-17 108.4 11.5 81 644-727 1-83 (85)
49 cd04968 Ig3_Contactin_like Thi 99.4 5.4E-12 1.2E-16 109.3 12.0 85 630-725 2-87 (88)
50 cd04969 Ig5_Contactin_like Fif 99.4 3.9E-12 8.5E-17 105.7 10.2 73 643-725 1-73 (73)
51 cd05746 Ig4_Peroxidasin Fourth 99.3 4E-12 8.6E-17 104.1 8.7 68 646-723 1-68 (69)
52 cd04978 Ig4_L1-NrCAM_like Four 99.3 7.7E-12 1.7E-16 105.1 10.3 75 643-725 1-75 (76)
53 cd05853 Ig6_Contactin-4 Sixth 99.3 7.6E-12 1.6E-16 105.3 9.9 82 644-728 1-84 (85)
54 cd05855 Ig_TrkB_d5 Fifth domai 99.3 1.2E-11 2.6E-16 102.5 10.1 76 647-724 2-77 (79)
55 cd05740 Ig_CEACAM_D4 Fourth im 99.3 1.7E-11 3.7E-16 106.1 11.3 86 629-725 1-90 (91)
56 cd04976 Ig2_VEGFR Second immun 99.3 8.6E-12 1.9E-16 102.5 9.0 69 646-725 1-69 (71)
57 cd05771 IgC_Tapasin_R Tapasin- 99.3 4.9E-11 1.1E-15 113.2 15.4 125 91-221 2-133 (139)
58 cd04975 Ig4_SCFR_like Fourth i 99.3 1.5E-11 3.2E-16 108.3 10.6 88 141-230 11-99 (101)
59 cd05866 Ig1_NCAM-2 First immun 99.3 3.1E-11 6.8E-16 104.1 12.1 84 634-725 6-91 (92)
60 cd04968 Ig3_Contactin_like Thi 99.3 1.8E-11 4E-16 105.9 10.7 83 544-627 1-88 (88)
61 cd05848 Ig1_Contactin-5 First 99.3 2.2E-11 4.9E-16 106.3 11.3 73 642-723 18-92 (94)
62 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 1.6E-11 3.5E-16 102.1 9.9 72 646-725 1-73 (74)
63 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 2.1E-11 4.5E-16 102.7 10.6 77 647-724 2-79 (81)
64 TIGR00864 PCC polycystin catio 99.3 9.7E-06 2.1E-10 105.0 65.2 567 99-726 1480-2125(2740)
65 cd05743 Ig_Perlecan_D2_like Im 99.3 1.9E-11 4.1E-16 102.9 10.1 74 643-723 1-74 (78)
66 cd05760 Ig2_PTK7 Second immuno 99.3 1.7E-11 3.7E-16 102.7 9.8 73 646-726 1-75 (77)
67 PF07679 I-set: Immunoglobulin 99.3 2.4E-11 5.3E-16 106.0 11.0 89 28-128 1-90 (90)
68 cd05876 Ig3_L1-CAM Third immun 99.3 1.4E-11 3E-16 101.5 8.9 70 646-725 1-70 (71)
69 cd04973 Ig1_FGFR First immunog 99.3 1.8E-11 4E-16 103.1 9.8 78 636-725 2-79 (79)
70 cd05857 Ig2_FGFR Second immuno 99.3 2.1E-11 4.5E-16 105.0 10.4 81 638-725 4-85 (85)
71 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 2.1E-11 4.6E-16 99.3 9.7 68 643-723 1-68 (69)
72 cd05771 IgC_Tapasin_R Tapasin- 99.3 5.3E-11 1.1E-15 113.0 13.8 123 591-715 1-132 (139)
73 cd05736 Ig2_Follistatin_like S 99.3 2.6E-11 5.5E-16 101.8 10.2 75 646-727 1-75 (76)
74 cd05864 Ig2_VEGFR-2 Second imm 99.3 1.9E-11 4E-16 99.5 8.9 68 646-725 1-68 (70)
75 cd05850 Ig1_Contactin-2 First 99.3 5.7E-11 1.2E-15 103.8 12.3 81 634-723 7-92 (94)
76 cd05863 Ig2_VEGFR-3 Second imm 99.3 2.2E-11 4.7E-16 97.7 8.6 66 321-388 1-66 (67)
77 cd07693 Ig1_Robo First immunog 99.3 3.9E-11 8.4E-16 107.2 11.3 92 629-725 1-99 (100)
78 cd05726 Ig4_Robo Fhird immunog 99.3 2.4E-11 5.2E-16 105.6 9.3 78 643-728 1-84 (90)
79 cd05725 Ig3_Robo Third immunog 99.3 2.4E-11 5.3E-16 99.6 8.8 69 646-725 1-69 (69)
80 cd04974 Ig3_FGFR Third immunog 99.3 2.9E-11 6.3E-16 104.9 9.7 82 643-725 1-89 (90)
81 cd05722 Ig1_Neogenin First imm 99.2 5E-11 1.1E-15 104.9 11.0 84 634-725 5-95 (95)
82 cd05737 Ig_Myomesin_like_C C-t 99.2 4.9E-11 1.1E-15 104.1 10.4 79 141-225 9-87 (92)
83 cd05745 Ig3_Peroxidasin Third 99.2 3.2E-11 6.9E-16 100.4 8.8 68 558-626 1-74 (74)
84 cd05764 Ig_2 Subgroup of the i 99.2 4.8E-11 1E-15 99.5 9.9 73 643-725 1-74 (74)
85 cd05724 Ig2_Robo Second immuno 99.2 5.4E-11 1.2E-15 102.7 10.5 81 635-724 3-85 (86)
86 cd05859 Ig4_PDGFR-alpha Fourth 99.2 3.2E-11 6.9E-16 106.4 9.1 89 142-231 12-100 (101)
87 cd05894 Ig_C5_MyBP-C C5 immuno 99.2 5.8E-11 1.3E-15 101.7 10.4 81 142-231 4-85 (86)
88 cd05763 Ig_1 Subgroup of the i 99.2 3.5E-11 7.6E-16 100.6 8.7 73 646-725 1-74 (75)
89 cd05728 Ig4_Contactin-2-like F 99.2 4.8E-11 1E-15 102.3 9.6 79 547-626 2-85 (85)
90 cd05858 Ig3_FGFR-2 Third immun 99.2 6.2E-11 1.3E-15 102.9 10.1 82 643-725 1-89 (90)
91 cd05892 Ig_Myotilin_C C-termin 99.2 3.8E-11 8.2E-16 99.3 8.3 73 151-229 1-74 (75)
92 cd04970 Ig6_Contactin_like Six 99.2 7.9E-11 1.7E-15 101.1 10.6 81 644-727 1-83 (85)
93 cd05870 Ig5_NCAM-2 Fifth immun 99.2 6.5E-11 1.4E-15 104.7 10.2 81 544-626 2-98 (98)
94 cd04977 Ig1_NCAM-1_like First 99.2 1.3E-10 2.8E-15 101.1 11.8 84 635-725 7-92 (92)
95 cd05856 Ig2_FGFRL1-like Second 99.2 5.6E-11 1.2E-15 101.6 9.3 78 639-725 5-82 (82)
96 cd05849 Ig1_Contactin-1 First 99.2 1E-10 2.2E-15 101.7 10.8 71 643-723 19-91 (93)
97 cd05865 Ig1_NCAM-1 First immun 99.2 8.4E-11 1.8E-15 102.6 10.4 79 548-626 4-95 (96)
98 cd04972 Ig_TrkABC_d4 Fourth do 99.2 6.2E-11 1.3E-15 103.0 9.5 79 547-626 3-90 (90)
99 cd05869 Ig5_NCAM-1 Fifth immun 99.2 7.6E-11 1.6E-15 104.0 10.0 82 544-626 2-97 (97)
100 cd05773 Ig8_hNephrin_like Eigh 99.2 6.6E-11 1.4E-15 106.4 9.6 89 541-630 1-108 (109)
101 cd05731 Ig3_L1-CAM_like Third 99.2 8.3E-11 1.8E-15 97.3 8.9 70 646-725 1-70 (71)
102 cd05730 Ig3_NCAM-1_like Third 99.2 9.1E-11 2E-15 103.3 9.6 84 544-628 1-94 (95)
103 cd05852 Ig5_Contactin-1 Fifth 99.2 7.7E-11 1.7E-15 97.1 8.4 72 148-229 1-72 (73)
104 cd05735 Ig8_DSCAM Eight immuno 99.2 1.8E-10 3.9E-15 99.2 10.9 85 148-237 1-86 (88)
105 cd05747 Ig5_Titin_like M5, fif 99.2 1.4E-10 3.1E-15 101.2 10.3 80 138-224 8-87 (92)
106 cd05854 Ig6_Contactin-2 Sixth 99.2 1.2E-10 2.7E-15 99.4 9.5 72 319-391 1-85 (85)
107 cd05756 Ig1_IL1R_like First im 99.2 9.4E-11 2E-15 101.9 8.6 83 636-725 7-94 (94)
108 cd05868 Ig4_NrCAM Fourth immun 99.2 1.3E-10 2.7E-15 97.1 8.6 68 559-627 1-76 (76)
109 cd05893 Ig_Palladin_C C-termin 99.2 1.2E-10 2.5E-15 96.6 8.0 73 151-229 1-74 (75)
110 cd05740 Ig_CEACAM_D4 Fourth im 99.2 1.9E-10 4.1E-15 99.5 9.6 81 545-626 2-90 (91)
111 cd05891 Ig_M-protein_C C-termi 99.1 2.6E-10 5.7E-15 99.2 10.1 82 141-230 9-90 (92)
112 cd05723 Ig4_Neogenin Fourth im 99.1 2.6E-10 5.6E-15 93.9 9.4 65 561-626 1-71 (71)
113 cd05750 Ig_Pro_neuregulin Immu 99.1 2E-10 4.4E-15 96.1 8.9 72 646-722 1-74 (75)
114 cd05765 Ig_3 Subgroup of the i 99.1 2.4E-10 5.2E-15 97.4 9.5 75 643-725 1-81 (81)
115 cd05749 Ig2_Tyro3_like Second 99.1 2.1E-10 4.6E-15 96.2 8.9 75 547-624 1-80 (81)
116 cd05743 Ig_Perlecan_D2_like Im 99.1 1.4E-10 3E-15 97.6 7.8 77 148-231 1-77 (78)
117 cd07693 Ig1_Robo First immunog 99.1 2.6E-10 5.6E-15 101.8 10.0 82 544-626 1-99 (100)
118 cd05853 Ig6_Contactin-4 Sixth 99.1 1.7E-10 3.7E-15 97.2 8.2 70 560-630 1-85 (85)
119 cd04970 Ig6_Contactin_like Six 99.1 2.1E-10 4.5E-15 98.5 9.0 70 560-630 1-85 (85)
120 cd05733 Ig6_L1-CAM_like Sixth 99.1 2.2E-10 4.7E-15 96.0 8.6 67 646-719 1-71 (77)
121 PHA03376 BARF1; Provisional 99.1 1.1E-09 2.4E-14 101.6 13.7 130 35-173 19-163 (221)
122 cd05867 Ig4_L1-CAM_like Fourth 99.1 3.2E-10 7E-15 94.9 9.5 68 318-387 1-75 (76)
123 cd07702 Ig2_VEGFR-1 Second imm 99.1 2.6E-10 5.7E-15 92.8 8.5 68 646-723 1-68 (72)
124 cd05748 Ig_Titin_like Immunogl 99.1 3E-10 6.4E-15 94.7 9.1 69 150-225 1-69 (74)
125 cd05734 Ig7_DSCAM Seventh immu 99.1 2.9E-10 6.2E-15 96.1 9.0 72 646-725 1-79 (79)
126 cd05874 Ig6_NrCAM Sixth immuno 99.1 3.1E-10 6.7E-15 94.8 9.1 71 646-723 1-76 (77)
127 cd05876 Ig3_L1-CAM Third immun 99.1 2.5E-10 5.5E-15 94.0 8.4 65 562-627 1-71 (71)
128 cd05752 Ig1_FcgammaR_like Frst 99.1 2.4E-10 5.1E-15 95.4 8.0 76 630-724 1-77 (78)
129 cd05875 Ig6_hNeurofascin_like 99.1 3.8E-10 8.2E-15 94.3 9.3 67 646-719 1-71 (77)
130 cd05848 Ig1_Contactin-5 First 99.1 3.7E-10 8E-15 98.6 9.5 80 544-624 1-92 (94)
131 cd05744 Ig_Myotilin_C_like Imm 99.1 3.5E-10 7.7E-15 94.1 8.7 72 151-228 1-73 (75)
132 cd05850 Ig1_Contactin-2 First 99.1 5.7E-10 1.2E-14 97.5 10.2 80 544-624 1-92 (94)
133 cd05749 Ig2_Tyro3_like Second 99.1 2.9E-10 6.2E-15 95.5 7.9 76 393-470 1-80 (81)
134 cd04969 Ig5_Contactin_like Fif 99.1 3.5E-10 7.5E-15 93.9 8.4 67 559-626 1-73 (73)
135 cd05732 Ig5_NCAM-1_like Fifth 99.1 5.3E-10 1.2E-14 98.7 10.1 87 135-230 3-94 (96)
136 cd04967 Ig1_Contactin First Ig 99.1 9.4E-10 2E-14 95.8 11.3 68 642-718 18-86 (91)
137 cd05866 Ig1_NCAM-2 First immun 99.1 7.3E-10 1.6E-14 95.6 10.4 83 141-232 8-91 (92)
138 cd05760 Ig2_PTK7 Second immuno 99.1 3.7E-10 8E-15 94.6 8.2 74 151-233 1-75 (77)
139 cd05849 Ig1_Contactin-1 First 99.1 6.9E-10 1.5E-14 96.4 10.0 81 390-470 1-91 (93)
140 cd05726 Ig4_Robo Fhird immunog 99.1 5.6E-10 1.2E-14 97.0 9.5 70 559-629 1-84 (90)
141 cd05742 Ig1_VEGFR_like First i 99.1 5.2E-10 1.1E-14 95.8 9.1 80 643-725 1-83 (84)
142 cd05752 Ig1_FcgammaR_like Frst 99.1 3.3E-10 7.1E-15 94.5 7.6 77 545-626 1-78 (78)
143 cd04974 Ig3_FGFR Third immunog 99.1 3.7E-10 8E-15 97.9 8.2 68 559-627 1-90 (90)
144 cd04973 Ig1_FGFR First immunog 99.1 6.8E-10 1.5E-14 93.6 9.4 68 34-113 1-68 (79)
145 cd05857 Ig2_FGFR Second immuno 99.1 8.6E-10 1.9E-14 94.9 10.2 79 143-227 4-82 (85)
146 cd05882 Ig1_Necl-1 First (N-te 99.1 7.2E-10 1.6E-14 96.3 9.5 88 35-128 5-95 (95)
147 cd05724 Ig2_Robo Second immuno 99.1 1.1E-09 2.3E-14 94.6 10.6 77 550-626 2-86 (86)
148 cd05864 Ig2_VEGFR-2 Second imm 99.1 6E-10 1.3E-14 90.6 8.3 65 321-387 1-68 (70)
149 cd05758 Ig5_KIRREL3-like Fifth 99.1 1.1E-09 2.3E-14 96.9 10.4 88 134-224 2-93 (98)
150 cd05855 Ig_TrkB_d5 Fifth domai 99.0 7.3E-10 1.6E-14 91.9 8.3 71 153-225 3-73 (79)
151 cd04978 Ig4_L1-NrCAM_like Four 99.0 7.8E-10 1.7E-14 92.8 8.6 73 148-228 1-73 (76)
152 cd05722 Ig1_Neogenin First imm 99.0 9.9E-10 2.1E-14 96.6 9.5 80 547-626 2-95 (95)
153 cd05895 Ig_Pro_neuregulin-1 Im 99.0 8.7E-10 1.9E-14 92.4 8.7 73 646-723 1-76 (76)
154 cd05763 Ig_1 Subgroup of the i 99.0 7.4E-10 1.6E-14 92.5 8.2 64 562-626 1-74 (75)
155 cd05738 Ig2_RPTP_IIa_LAR_like 99.0 8.9E-10 1.9E-14 91.5 8.3 66 562-627 1-74 (74)
156 cd05725 Ig3_Robo Third immunog 99.0 8.8E-10 1.9E-14 90.3 8.0 64 562-626 1-69 (69)
157 cd04977 Ig1_NCAM-1_like First 99.0 1.9E-09 4.1E-14 93.8 10.3 78 548-626 4-92 (92)
158 cd04976 Ig2_VEGFR Second immun 99.0 1.2E-09 2.6E-14 89.7 8.6 66 321-388 1-70 (71)
159 cd04971 Ig_TrKABC_d5 Fifth dom 99.0 1.2E-09 2.6E-14 92.0 8.6 71 153-224 3-74 (81)
160 cd05861 Ig1_PDGFR-alphabeta Fr 99.0 3.2E-09 7E-14 90.5 11.1 81 643-726 1-83 (84)
161 cd05746 Ig4_Peroxidasin Fourth 99.0 1.2E-09 2.6E-14 89.4 7.6 62 562-624 1-68 (69)
162 cd05873 Ig_Sema4D_like Immunog 99.0 3.1E-09 6.8E-14 89.8 10.2 69 33-112 2-70 (87)
163 cd05764 Ig_2 Subgroup of the i 99.0 1.9E-09 4E-14 89.9 8.8 67 559-626 1-74 (74)
164 cd07701 Ig1_Necl-3 First (N-te 99.0 2.3E-09 5.1E-14 93.5 9.7 89 34-128 4-95 (95)
165 cd05739 Ig3_RPTP_IIa_LAR_like 99.0 2.2E-09 4.8E-14 87.4 8.9 64 318-385 1-68 (69)
166 cd05882 Ig1_Necl-1 First (N-te 99.0 4.1E-09 8.9E-14 91.6 10.8 85 636-725 5-95 (95)
167 cd05856 Ig2_FGFRL1-like Second 99.0 1.8E-09 4E-14 92.2 8.5 72 554-626 4-82 (82)
168 cd05731 Ig3_L1-CAM_like Third 99.0 1.5E-09 3.3E-14 89.7 7.6 65 562-627 1-71 (71)
169 cd05729 Ig2_FGFR_like Second i 99.0 4.5E-09 9.7E-14 90.5 10.8 81 639-725 5-85 (85)
170 cd07702 Ig2_VEGFR-1 Second imm 99.0 9.3E-10 2E-14 89.6 6.0 70 151-231 1-71 (72)
171 cd05765 Ig_3 Subgroup of the i 99.0 2.5E-09 5.3E-14 91.1 8.6 67 559-626 1-81 (81)
172 cd05756 Ig1_IL1R_like First im 99.0 2E-09 4.4E-14 93.6 8.0 74 552-626 7-94 (94)
173 cd05754 Ig3_Perlecan_like Thir 99.0 2.8E-09 6.1E-14 91.5 8.8 77 634-723 7-84 (85)
174 cd05885 Ig2_Necl-4 Second immu 98.9 5.7E-09 1.2E-13 86.1 9.8 78 150-231 1-79 (80)
175 cd04979 Ig_Semaphorin_C Immuno 98.9 4.1E-09 8.8E-14 91.4 9.3 82 636-727 4-88 (89)
176 cd05858 Ig3_FGFR-2 Third immun 98.9 5.4E-09 1.2E-13 90.7 9.8 82 148-230 1-89 (90)
177 cd04979 Ig_Semaphorin_C Immuno 98.9 5.5E-09 1.2E-13 90.6 9.8 86 33-129 2-87 (89)
178 cd05873 Ig_Sema4D_like Immunog 98.9 7.8E-09 1.7E-13 87.4 9.6 69 635-714 3-71 (87)
179 cd07701 Ig1_Necl-3 First (N-te 98.9 9.3E-09 2E-13 89.8 10.4 86 635-725 4-95 (95)
180 cd05736 Ig2_Follistatin_like S 98.9 5.6E-09 1.2E-13 87.5 8.2 73 151-230 1-73 (76)
181 cd05881 Ig1_Necl-2 First (N-te 98.9 1.5E-08 3.2E-13 87.3 10.5 77 35-112 5-84 (95)
182 cd05717 Ig1_Necl-1-3_like Firs 98.9 1.1E-08 2.3E-13 90.0 9.9 78 34-112 4-84 (95)
183 cd05734 Ig7_DSCAM Seventh immu 98.9 6.6E-09 1.4E-13 87.7 8.2 65 562-626 1-79 (79)
184 cd05733 Ig6_L1-CAM_like Sixth 98.9 6E-09 1.3E-13 87.3 7.5 65 151-222 1-69 (77)
185 cd05753 Ig2_FcgammaR_like Seco 98.9 8E-09 1.7E-13 87.7 8.0 74 636-724 7-82 (83)
186 cd05875 Ig6_hNeurofascin_like 98.9 1E-08 2.2E-13 85.7 8.4 69 151-229 1-75 (77)
187 cd05874 Ig6_NrCAM Sixth immuno 98.9 8.6E-09 1.9E-13 86.1 8.0 72 151-230 1-76 (77)
188 cd05862 Ig1_VEGFR First immuno 98.9 1.2E-08 2.7E-13 87.2 9.1 83 643-726 1-85 (86)
189 cd05754 Ig3_Perlecan_like Thir 98.8 1.1E-08 2.5E-13 87.7 8.6 76 548-624 5-84 (85)
190 cd05871 Ig_Semaphorin_classIII 98.8 2.3E-08 4.9E-13 86.4 10.3 87 35-130 4-90 (91)
191 cd05750 Ig_Pro_neuregulin Immu 98.8 9.6E-09 2.1E-13 85.9 7.8 70 151-225 1-72 (75)
192 cd05757 Ig2_IL1R_like Second i 98.8 1.3E-08 2.8E-13 87.9 8.5 78 637-725 4-86 (92)
193 cd04967 Ig1_Contactin First Ig 98.8 1.3E-08 2.8E-13 88.6 8.6 72 545-617 2-84 (91)
194 cd05898 Ig5_KIRREL3 Fifth immu 98.8 2.9E-08 6.2E-13 86.1 10.5 87 134-223 2-92 (98)
195 cd05861 Ig1_PDGFR-alphabeta Fr 98.8 4.4E-08 9.6E-13 83.4 11.4 83 148-233 1-83 (84)
196 cd05753 Ig2_FcgammaR_like Seco 98.8 1.7E-08 3.7E-13 85.7 8.1 75 312-387 8-83 (83)
197 cd05742 Ig1_VEGFR_like First i 98.8 2.6E-08 5.7E-13 85.2 9.3 81 148-230 1-83 (84)
198 cd04983 IgV_TCR_alpha_like Imm 98.8 4E-08 8.6E-13 89.1 10.8 82 31-112 2-92 (109)
199 cd05860 Ig4_SCFR Fourth immuno 98.8 7.7E-08 1.7E-12 82.5 11.1 90 636-726 11-100 (101)
200 cd05895 Ig_Pro_neuregulin-1 Im 98.8 2.8E-08 6.1E-13 83.2 8.5 69 151-225 1-73 (76)
201 cd05759 Ig2_KIRREL3-like Secon 98.7 7.7E-08 1.7E-12 81.8 10.5 81 151-232 2-82 (82)
202 PF13895 Ig_2: Immunoglobulin 98.7 4E-08 8.7E-13 83.3 8.8 79 629-725 1-80 (80)
203 cd05729 Ig2_FGFR_like Second i 98.7 1.1E-07 2.3E-12 81.8 11.1 81 142-230 3-83 (85)
204 cd05717 Ig1_Necl-1-3_like Firs 98.7 9.5E-08 2.1E-12 84.0 10.8 85 636-725 5-95 (95)
205 cd07690 Ig1_CD4 First immunogl 98.7 4.5E-08 9.7E-13 84.4 8.4 77 639-717 3-91 (94)
206 cd05879 Ig_P0 Immunoglobulin ( 98.7 9.3E-08 2E-12 86.2 10.9 80 33-113 4-103 (116)
207 cd05757 Ig2_IL1R_like Second i 98.7 5.8E-08 1.3E-12 83.8 8.9 77 143-229 5-85 (92)
208 cd05727 Ig2_Contactin-2-like S 98.7 2.9E-08 6.4E-13 85.2 6.8 74 637-717 12-86 (96)
209 cd07690 Ig1_CD4 First immunogl 98.7 3.9E-08 8.5E-13 84.8 7.5 76 37-112 2-87 (94)
210 PF13895 Ig_2: Immunoglobulin 98.7 6.6E-08 1.4E-12 82.0 8.8 79 545-626 2-80 (80)
211 cd05871 Ig_Semaphorin_classIII 98.7 9.7E-08 2.1E-12 82.5 9.7 80 637-726 5-89 (91)
212 smart00408 IGc2 Immunoglobulin 98.7 8.5E-08 1.8E-12 76.8 8.3 63 642-715 1-63 (63)
213 cd05897 Ig2_IL1R2_like Second 98.7 5.9E-08 1.3E-12 83.5 7.3 80 638-725 5-93 (95)
214 cd05727 Ig2_Contactin-2-like S 98.7 6.9E-08 1.5E-12 82.9 7.4 74 141-222 11-86 (96)
215 cd05899 IgV_TCR_beta Immunoglo 98.6 1.5E-07 3.3E-12 85.2 9.7 81 31-112 2-94 (110)
216 cd05845 Ig2_L1-CAM_like Second 98.6 9.6E-08 2.1E-12 81.8 6.8 73 636-717 11-85 (95)
217 cd05715 Ig_P0-like Immunoglobu 98.6 3.2E-07 7E-12 83.8 10.9 81 33-113 4-103 (116)
218 cd05883 Ig2_Necl-2 Second immu 98.6 4.6E-07 1E-11 75.1 10.4 81 150-234 1-81 (82)
219 cd05774 Ig_CEACAM_D1 First imm 98.6 2.3E-07 5E-12 81.9 8.8 79 30-113 1-93 (105)
220 smart00410 IG_like Immunoglobu 98.6 8E-07 1.7E-11 76.1 12.2 82 637-725 3-85 (86)
221 smart00409 IG Immunoglobulin. 98.6 8E-07 1.7E-11 76.1 12.2 82 637-725 3-85 (86)
222 cd05751 Ig1_LILRB1_like First 98.6 2.2E-07 4.7E-12 80.6 8.2 88 28-128 3-90 (91)
223 cd05872 Ig_Sema4B_like Immunog 98.6 3.6E-07 7.8E-12 76.7 9.0 65 35-111 4-68 (85)
224 cd05860 Ig4_SCFR Fourth immuno 98.5 7.9E-07 1.7E-11 76.3 10.8 83 141-225 11-94 (101)
225 PHA03273 envelope glycoprotein 98.5 3.2E-05 7E-10 82.7 24.9 80 437-517 198-280 (486)
226 cd05880 Ig_EVA1 Immunoglobulin 98.5 6.1E-07 1.3E-11 81.5 10.7 81 33-113 4-102 (115)
227 cd05845 Ig2_L1-CAM_like Second 98.5 2.7E-07 5.9E-12 79.1 7.8 73 141-222 11-85 (95)
228 cd05896 Ig1_IL1RAPL-1_like Fir 98.5 4.4E-07 9.6E-12 78.1 8.9 73 35-113 8-93 (104)
229 cd05712 Ig_Siglec_N Immunoglob 98.5 6.9E-07 1.5E-11 82.0 10.8 80 33-112 5-102 (119)
230 cd05897 Ig2_IL1R2_like Second 98.5 3.9E-07 8.4E-12 78.5 7.8 72 144-222 6-81 (95)
231 cd07706 IgV_TCR_delta Immunogl 98.5 7.2E-07 1.6E-11 81.7 10.2 82 30-111 2-93 (116)
232 cd00099 IgV Immunoglobulin var 98.5 4E-07 8.7E-12 81.9 8.4 76 37-112 1-89 (105)
233 PHA03271 envelope glycoprotein 98.5 0.00012 2.6E-09 77.0 26.2 231 77-333 194-434 (490)
234 cd05759 Ig2_KIRREL3-like Secon 98.5 9.2E-07 2E-11 75.2 9.3 78 645-724 1-81 (82)
235 cd05713 Ig_MOG_like Immunoglob 98.5 1.1E-06 2.4E-11 78.1 10.2 83 42-128 1-99 (100)
236 cd05862 Ig1_VEGFR First immuno 98.5 8.7E-07 1.9E-11 75.8 8.9 81 148-229 1-83 (86)
237 PF07686 V-set: Immunoglobulin 98.4 7.3E-07 1.6E-11 81.5 8.9 96 30-128 4-114 (114)
238 smart00408 IGc2 Immunoglobulin 98.4 5.9E-07 1.3E-11 71.8 7.2 63 147-220 1-63 (63)
239 PF00047 ig: Immunoglobulin do 98.4 6E-07 1.3E-11 72.2 7.1 62 42-109 1-64 (64)
240 PHA03270 envelope glycoprotein 98.4 0.00013 2.8E-09 77.4 25.9 175 91-280 183-363 (466)
241 cd05896 Ig1_IL1RAPL-1_like Fir 98.4 9.8E-07 2.1E-11 76.0 8.5 80 638-725 10-104 (104)
242 PHA03270 envelope glycoprotein 98.4 3.9E-05 8.5E-10 81.2 21.9 81 436-517 181-264 (466)
243 cd05878 Ig_Aggrecan_like Immun 98.4 8.7E-07 1.9E-11 79.7 8.6 86 41-130 1-108 (110)
244 cd05846 Ig1_MRC-OX-2_like Firs 98.4 1.7E-06 3.7E-11 76.1 10.1 83 42-128 1-96 (97)
245 cd05761 Ig2_Necl-1-4_like Seco 98.4 2.3E-06 5.1E-11 72.4 10.5 70 151-222 2-71 (82)
246 PF00047 ig: Immunoglobulin do 98.4 8.1E-07 1.7E-11 71.5 7.2 64 148-215 1-64 (64)
247 PHA03269 envelope glycoprotein 98.4 9.6E-05 2.1E-09 79.2 24.1 81 437-518 289-373 (566)
248 cd05881 Ig1_Necl-2 First (N-te 98.4 4E-06 8.6E-11 72.3 11.5 73 636-712 5-83 (95)
249 cd05885 Ig2_Necl-4 Second immu 98.4 1.2E-06 2.6E-11 72.5 7.9 67 646-717 2-69 (80)
250 cd05751 Ig1_LILRB1_like First 98.4 1.4E-06 3E-11 75.6 8.6 74 629-713 2-75 (91)
251 cd07705 Ig2_Necl-1 Second immu 98.4 3.4E-06 7.4E-11 71.4 10.8 79 151-230 2-81 (83)
252 smart00409 IG Immunoglobulin. 98.4 3.5E-06 7.6E-11 72.1 10.8 74 552-626 2-85 (86)
253 smart00410 IG_like Immunoglobu 98.4 3.5E-06 7.6E-11 72.1 10.8 74 552-626 2-85 (86)
254 cd05900 Ig_Aggrecan Immunoglob 98.4 1.5E-06 3.3E-11 77.7 8.6 85 41-129 1-109 (112)
255 cd05714 Ig_CSPGs_LP Immunoglob 98.4 1.8E-06 3.8E-11 77.6 9.1 85 41-130 1-104 (106)
256 cd04980 IgV_L_kappa Immunoglob 98.4 1.2E-06 2.6E-11 78.7 7.8 81 30-112 3-93 (106)
257 cd05877 Ig_LP_like Immunoglobu 98.3 1.9E-06 4.1E-11 77.5 8.8 84 41-129 1-103 (106)
258 cd05718 Ig1_PVR_like First imm 98.3 3.2E-06 6.9E-11 74.8 10.1 82 43-128 1-97 (98)
259 cd05877 Ig_LP_like Immunoglobu 98.3 3.5E-06 7.7E-11 75.7 10.5 82 642-726 1-103 (106)
260 cd05886 Ig1_Nectin-1_like Firs 98.3 4E-06 8.7E-11 73.2 10.3 83 43-129 1-99 (99)
261 cd04982 IgV_TCR_gamma Immunogl 98.3 1.7E-06 3.6E-11 79.3 8.4 80 32-111 3-98 (116)
262 cd05716 Ig_pIgR Immunoglobulin 98.3 1.5E-06 3.2E-11 76.9 7.7 76 37-112 2-86 (98)
263 cd05714 Ig_CSPGs_LP Immunoglob 98.3 3.5E-06 7.6E-11 75.7 10.3 84 642-726 1-103 (106)
264 PHA03269 envelope glycoprotein 98.3 8.9E-05 1.9E-09 79.5 21.7 187 77-278 276-471 (566)
265 cd05775 Ig_SLAM-CD84_like_N N- 98.3 1.3E-06 2.7E-11 76.8 6.8 82 40-128 2-96 (97)
266 PHA02987 Ig domain OX-2-like p 98.3 8.2E-06 1.8E-10 77.3 12.2 94 35-131 23-124 (189)
267 cd05888 Ig1_Nectin-4_like Frst 98.3 3.8E-06 8.3E-11 74.2 9.5 83 43-128 1-99 (100)
268 PHA03376 BARF1; Provisional 98.3 1.4E-05 2.9E-10 75.0 13.1 80 349-429 84-163 (221)
269 PF13927 Ig_3: Immunoglobulin 98.3 9.7E-07 2.1E-11 73.6 5.2 75 629-712 1-75 (75)
270 cd04984 IgV_L_lambda Immunoglo 98.3 3.8E-06 8.2E-11 74.2 8.7 73 37-111 1-84 (98)
271 cd05741 Ig_CEACAM_D1_like Firs 98.3 2.8E-06 6.1E-11 74.2 7.8 67 42-113 1-80 (92)
272 PF13927 Ig_3: Immunoglobulin 98.3 9.9E-07 2.1E-11 73.5 4.6 68 544-612 1-75 (75)
273 PHA03271 envelope glycoprotein 98.2 0.001 2.2E-08 70.2 27.0 82 436-517 206-290 (490)
274 cd05879 Ig_P0 Immunoglobulin ( 98.2 1.3E-05 2.8E-10 72.3 11.8 88 635-724 5-115 (116)
275 cd05887 Ig1_Nectin-3_like Firs 98.2 1.1E-05 2.4E-10 69.7 10.5 82 43-128 1-95 (96)
276 cd05902 Ig_Neurocan Immunoglob 98.2 6E-06 1.3E-10 73.6 8.9 85 41-129 1-107 (110)
277 cd05900 Ig_Aggrecan Immunoglob 98.2 1.1E-05 2.3E-10 72.3 10.5 83 642-726 1-109 (112)
278 cd05711 Ig_FcalphaRI Immunoglo 98.2 5.8E-06 1.3E-10 72.0 8.6 75 28-111 2-76 (94)
279 cd05774 Ig_CEACAM_D1 First imm 98.2 6.8E-06 1.5E-10 72.6 8.8 76 550-625 4-104 (105)
280 cd07700 IgV_CD8_beta Immunoglo 98.2 4.1E-06 8.9E-11 75.2 7.6 75 37-111 1-93 (107)
281 cd05872 Ig_Sema4B_like Immunog 98.2 1.1E-05 2.3E-10 67.8 9.0 74 398-472 4-82 (85)
282 PF08205 C2-set_2: CD80-like C 98.2 1.5E-05 3.2E-10 69.0 10.2 74 147-221 13-86 (89)
283 cd05884 Ig2_Necl-3 Second immu 98.2 1.8E-05 3.9E-10 66.8 10.1 71 151-222 2-72 (83)
284 cd05718 Ig1_PVR_like First imm 98.2 1.4E-05 3E-10 70.7 9.9 79 644-725 1-97 (98)
285 cd05878 Ig_Aggrecan_like Immun 98.1 1.9E-05 4.2E-10 71.0 10.7 84 642-726 1-107 (110)
286 cd05713 Ig_MOG_like Immunoglob 98.1 1.2E-05 2.5E-10 71.5 9.0 82 643-725 1-99 (100)
287 cd05901 Ig_Versican Immunoglob 98.1 1.9E-05 4.2E-10 70.3 10.2 84 42-129 2-114 (117)
288 cd05772 IgC_SIRP Signal-regula 98.1 2.9E-05 6.4E-10 69.4 11.1 93 128-222 2-95 (111)
289 cd00098 IgC Immunoglobulin Con 98.1 9.4E-06 2E-10 71.3 7.7 75 641-716 11-87 (95)
290 cd04981 IgV_H Immunoglobulin ( 98.1 1.6E-05 3.5E-10 72.4 9.5 79 33-111 3-97 (117)
291 cd05899 IgV_TCR_beta Immunoglo 98.1 1.4E-05 3E-10 72.4 9.0 76 635-715 5-96 (110)
292 cd04983 IgV_TCR_alpha_like Imm 98.1 1.4E-05 3.1E-10 72.2 8.8 78 635-715 5-94 (109)
293 cd05741 Ig_CEACAM_D1_like Firs 98.1 1.2E-05 2.6E-10 70.2 7.9 68 559-626 1-92 (92)
294 cd05711 Ig_FcalphaRI Immunoglo 98.1 2.7E-05 5.7E-10 67.9 9.7 75 629-711 1-75 (94)
295 PHA03273 envelope glycoprotein 98.1 0.003 6.5E-08 68.2 26.4 171 89-275 197-376 (486)
296 cd05755 Ig2_ICAM-1_like Second 98.0 2.8E-05 6E-10 67.4 9.1 74 144-221 12-87 (100)
297 cd00098 IgC Immunoglobulin Con 98.0 1.9E-05 4.1E-10 69.3 8.1 76 146-221 11-87 (95)
298 cd05886 Ig1_Nectin-1_like Firs 98.0 5E-05 1.1E-09 66.4 10.5 78 645-725 2-98 (99)
299 cd05889 Ig1_DNAM-1_like First 98.0 4.2E-05 9E-10 66.2 9.7 71 43-114 1-84 (96)
300 cd05888 Ig1_Nectin-4_like Frst 98.0 5.1E-05 1.1E-09 67.0 10.4 79 645-725 2-99 (100)
301 cd05775 Ig_SLAM-CD84_like_N N- 98.0 1.7E-05 3.7E-10 69.6 7.3 84 641-725 2-96 (97)
302 cd05846 Ig1_MRC-OX-2_like Firs 98.0 3.5E-05 7.6E-10 67.8 9.2 80 643-725 1-96 (97)
303 cd05880 Ig_EVA1 Immunoglobulin 98.0 3.2E-05 7E-10 70.2 8.9 92 140-231 5-114 (115)
304 PHA02987 Ig domain OX-2-like p 98.0 6.8E-05 1.5E-09 71.2 11.0 94 142-235 24-124 (189)
305 cd05887 Ig1_Nectin-3_like Firs 98.0 6E-05 1.3E-09 65.2 9.7 79 644-725 1-95 (96)
306 cd05715 Ig_P0-like Immunoglobu 97.9 4.9E-05 1.1E-09 69.4 9.3 92 140-231 5-115 (116)
307 cd07704 Ig2_Nectin-3-4_like Se 97.9 0.0001 2.2E-09 63.3 10.4 89 138-230 6-95 (97)
308 cd04980 IgV_L_kappa Immunoglob 97.9 4.3E-05 9.4E-10 68.6 8.4 74 635-713 7-93 (106)
309 cd07703 Ig2_Nectin-2_like Seco 97.9 0.00014 3E-09 62.8 10.6 78 149-230 16-93 (95)
310 cd05719 Ig2_PVR_like Second im 97.9 0.00011 2.5E-09 63.6 10.1 80 148-231 15-94 (95)
311 cd05902 Ig_Neurocan Immunoglob 97.9 0.00011 2.4E-09 65.6 10.2 83 643-726 2-107 (110)
312 cd05720 Ig_CD8_alpha Immunoglo 97.9 3.5E-05 7.6E-10 68.6 6.6 72 38-111 2-90 (104)
313 cd07699 IgC_L Immunoglobulin C 97.8 5.1E-05 1.1E-09 66.8 7.4 79 144-222 13-92 (100)
314 smart00407 IGc1 Immunoglobulin 97.8 0.00011 2.5E-09 60.9 9.1 70 151-220 2-72 (75)
315 smart00406 IGv Immunoglobulin 97.8 3.1E-05 6.7E-10 65.6 5.8 66 44-109 1-81 (81)
316 cd00099 IgV Immunoglobulin var 97.8 5.9E-05 1.3E-09 67.6 7.9 74 639-715 2-91 (105)
317 cd05761 Ig2_Necl-1-4_like Seco 97.8 0.00011 2.3E-09 62.3 8.8 69 646-717 2-71 (82)
318 cd05901 Ig_Versican Immunoglob 97.8 0.00025 5.3E-09 63.4 11.1 83 643-726 2-114 (117)
319 cd04982 IgV_TCR_gamma Immunogl 97.7 0.00011 2.3E-09 67.3 8.2 76 635-713 5-99 (116)
320 cd04984 IgV_L_lambda Immunoglo 97.7 0.00011 2.5E-09 64.7 7.7 70 639-713 2-85 (98)
321 PF07686 V-set: Immunoglobulin 97.7 0.00016 3.5E-09 65.9 8.7 78 549-626 6-114 (114)
322 cd05883 Ig2_Necl-2 Second immu 97.7 0.00035 7.5E-09 58.1 9.6 76 646-725 2-79 (82)
323 cd05755 Ig2_ICAM-1_like Second 97.7 0.0002 4.3E-09 62.2 8.4 79 29-113 3-85 (100)
324 PHA02914 Immunoglobulin-like d 97.7 0.072 1.6E-06 56.4 28.1 111 311-428 272-418 (500)
325 cd05889 Ig1_DNAM-1_like First 97.7 0.00036 7.7E-09 60.5 9.8 78 644-724 1-94 (96)
326 cd05772 IgC_SIRP Signal-regula 97.7 0.0004 8.8E-09 62.1 10.3 77 638-716 16-94 (111)
327 cd05847 IgC_CH2_IgE CH2 domain 97.7 0.00024 5.3E-09 61.5 8.6 77 642-718 13-90 (94)
328 cd05847 IgC_CH2_IgE CH2 domain 97.6 0.00024 5.1E-09 61.5 8.3 75 147-221 13-88 (94)
329 cd07698 IgC_MHC_I_alpha3 Class 97.6 0.0003 6.6E-09 61.2 9.1 69 643-715 14-84 (93)
330 cd07705 Ig2_Necl-1 Second immu 97.6 0.00043 9.4E-09 58.5 9.1 68 646-717 2-72 (83)
331 cd07699 IgC_L Immunoglobulin C 97.6 0.00022 4.9E-09 62.7 7.4 77 639-715 13-90 (100)
332 smart00407 IGc1 Immunoglobulin 97.6 0.00036 7.7E-09 57.9 8.3 69 645-714 1-71 (75)
333 cd05721 IgV_CTLA-4 Immunoglobu 97.6 0.00045 9.7E-09 60.8 8.8 79 32-110 3-94 (115)
334 cd05770 IgC_beta2m Class I maj 97.5 0.00081 1.8E-08 57.9 10.0 68 640-714 12-83 (93)
335 cd05716 Ig_pIgR Immunoglobulin 97.5 0.00047 1E-08 60.8 8.8 73 639-714 3-87 (98)
336 cd05884 Ig2_Necl-3 Second immu 97.5 0.00033 7.3E-09 59.1 7.4 70 646-717 2-72 (83)
337 cd05767 IgC_MHC_II_alpha Class 97.5 0.00072 1.6E-08 58.4 9.5 70 641-714 13-84 (94)
338 cd07694 Ig2_CD4 Second immunog 97.5 0.00092 2E-08 55.4 9.1 60 399-458 8-72 (88)
339 cd07706 IgV_TCR_delta Immunogl 97.5 0.00049 1.1E-08 62.9 8.4 77 635-713 6-94 (116)
340 cd05766 IgC_MHC_II_beta Class 97.5 0.0011 2.3E-08 57.6 10.0 70 641-716 12-85 (94)
341 cd07697 IgC_TCR_gamma T cell r 97.5 0.00082 1.8E-08 58.2 9.1 77 634-713 7-84 (96)
342 cd05766 IgC_MHC_II_beta Class 97.4 0.0016 3.6E-08 56.4 10.5 74 146-222 12-86 (94)
343 cd07696 IgC_CH3 CH3 domain (th 97.4 0.00092 2E-08 58.1 8.8 77 145-222 11-89 (96)
344 cd07698 IgC_MHC_I_alpha3 Class 97.4 0.0014 2.9E-08 57.1 9.9 71 148-221 14-85 (93)
345 cd07694 Ig2_CD4 Second immunog 97.4 0.0012 2.6E-08 54.7 8.7 73 553-626 8-85 (88)
346 KOG0613|consensus 97.4 0.0045 9.7E-08 75.3 17.2 135 266-428 218-373 (1205)
347 cd05769 IgC_TCR_beta T cell re 97.4 0.00072 1.6E-08 60.7 8.1 79 144-222 14-95 (115)
348 cd00096 Ig Immunoglobulin doma 97.4 0.001 2.2E-08 53.9 8.4 69 646-717 1-69 (74)
349 cd07700 IgV_CD8_beta Immunoglo 97.3 0.00078 1.7E-08 60.4 7.9 72 639-712 2-93 (107)
350 cd05767 IgC_MHC_II_alpha Class 97.3 0.0025 5.5E-08 55.0 10.6 70 148-220 15-85 (94)
351 PF07654 C1-set: Immunoglobuli 97.3 0.0018 3.9E-08 54.9 9.6 73 147-222 7-80 (83)
352 cd05768 IgC_CH4 CH4 domain (fo 97.3 0.0006 1.3E-08 60.2 6.8 76 640-715 13-92 (102)
353 cd05769 IgC_TCR_beta T cell re 97.3 0.0011 2.4E-08 59.5 8.6 81 640-720 15-98 (115)
354 cd05712 Ig_Siglec_N Immunoglob 97.3 0.0018 3.8E-08 59.4 10.0 78 634-713 5-102 (119)
355 cd07696 IgC_CH3 CH3 domain (th 97.3 0.0013 2.7E-08 57.3 8.5 81 635-716 6-88 (96)
356 cd05768 IgC_CH4 CH4 domain (fo 97.3 0.00099 2.1E-08 58.8 7.8 77 145-221 13-93 (102)
357 PF08205 C2-set_2: CD80-like C 97.3 0.0014 3.1E-08 56.5 8.4 86 630-717 1-87 (89)
358 cd05770 IgC_beta2m Class I maj 97.3 0.0032 6.9E-08 54.2 10.3 70 147-220 14-84 (93)
359 cd05720 Ig_CD8_alpha Immunoglo 97.2 0.00095 2.1E-08 59.4 7.1 69 639-712 2-90 (104)
360 cd07697 IgC_TCR_gamma T cell r 97.2 0.0022 4.7E-08 55.6 8.8 73 144-219 12-85 (96)
361 PF07654 C1-set: Immunoglobuli 97.2 0.0014 3.1E-08 55.6 7.5 69 642-716 7-79 (83)
362 cd04981 IgV_H Immunoglobulin ( 97.1 0.002 4.2E-08 58.8 8.2 75 635-712 4-97 (117)
363 cd00096 Ig Immunoglobulin doma 97.0 0.0025 5.4E-08 51.5 7.5 66 151-219 1-66 (74)
364 cd04985 IgC_CH1 CH1 domain (fi 96.9 0.0052 1.1E-07 53.3 8.6 72 642-714 15-87 (95)
365 cd07691 Ig_CD3_gamma_delta Imm 96.9 0.0027 5.8E-08 49.6 5.7 50 558-612 5-54 (69)
366 KOG0196|consensus 96.8 0.0013 2.7E-08 75.6 4.9 113 760-879 330-487 (996)
367 KOG1480|consensus 96.8 0.00043 9.4E-09 78.5 1.0 187 26-232 23-220 (909)
368 PF02124 Marek_A: Marek's dise 96.7 0.24 5.2E-06 48.9 19.3 125 620-755 73-208 (211)
369 PF00041 fn3: Fibronectin type 96.7 0.0003 6.6E-09 60.0 -1.1 57 762-818 1-85 (85)
370 cd07689 Ig2_VCAM-1 Second immu 96.7 0.0073 1.6E-07 51.6 7.2 83 134-220 3-87 (99)
371 KOG1480|consensus 96.6 0.00047 1E-08 78.2 -0.0 175 544-728 24-223 (909)
372 smart00406 IGv Immunoglobulin 96.6 0.0078 1.7E-07 50.6 7.1 64 645-710 1-81 (81)
373 cd04985 IgC_CH1 CH1 domain (fi 96.6 0.0089 1.9E-07 51.9 7.4 71 148-219 16-87 (95)
374 cd04986 IgC_CH2 CH2 domain (se 96.5 0.01 2.2E-07 51.4 7.5 72 146-220 17-90 (99)
375 cd07692 Ig_CD3_epsilon Immunog 96.5 0.0052 1.1E-07 47.8 4.9 51 403-458 5-55 (65)
376 cd07691 Ig_CD3_gamma_delta Imm 96.4 0.0069 1.5E-07 47.4 5.2 49 405-458 6-54 (69)
377 PHA02914 Immunoglobulin-like d 96.4 1.8 4E-05 46.2 28.0 158 552-715 272-468 (500)
378 cd04986 IgC_CH2 CH2 domain (se 96.3 0.0095 2E-07 51.7 6.2 74 639-715 15-90 (99)
379 cd07692 Ig_CD3_epsilon Immunog 96.3 0.0048 1E-07 47.9 3.7 51 557-612 5-55 (65)
380 PF08204 V-set_CD47: CD47 immu 96.2 0.0096 2.1E-07 53.9 5.5 73 38-112 23-107 (130)
381 PF02480 Herpes_gE: Alphaherpe 95.8 0.03 6.4E-07 63.1 8.7 42 434-475 86-127 (439)
382 cd05721 IgV_CTLA-4 Immunoglobu 95.7 0.069 1.5E-06 47.3 8.7 75 635-711 5-94 (115)
383 cd05719 Ig2_PVR_like Second im 95.7 0.064 1.4E-06 46.5 8.3 70 644-721 16-89 (95)
384 cd07689 Ig2_VCAM-1 Second immu 95.5 0.068 1.5E-06 45.8 7.4 65 247-311 11-88 (99)
385 PHA02982 hypothetical protein; 95.5 0.9 2E-05 44.0 15.6 171 35-222 32-223 (251)
386 KOG0613|consensus 95.2 0.13 2.8E-06 63.3 11.3 166 548-718 233-420 (1205)
387 cd07703 Ig2_Nectin-2_like Seco 95.1 0.11 2.3E-06 45.0 7.7 64 43-113 16-82 (95)
388 PF08204 V-set_CD47: CD47 immu 94.9 0.04 8.6E-07 49.9 4.8 85 640-726 24-120 (130)
389 PHA02633 hypothetical protein; 94.9 0.078 1.7E-06 40.5 5.3 42 349-391 15-56 (63)
390 PRK14081 triple tyrosine motif 94.7 12 0.00026 44.2 39.3 393 313-730 107-576 (667)
391 PHA02982 hypothetical protein; 94.7 0.36 7.7E-06 46.7 10.5 124 144-276 35-172 (251)
392 PHA03283 envelope glycoprotein 94.6 2.7 5.8E-05 47.0 18.5 41 435-476 132-172 (542)
393 KOG0196|consensus 94.4 0.11 2.4E-06 60.4 7.7 107 690-827 397-537 (996)
394 PHA02633 hypothetical protein; 94.1 0.1 2.2E-06 39.9 4.6 38 690-727 17-54 (63)
395 cd07704 Ig2_Nectin-3-4_like Se 93.8 0.46 1E-05 41.1 8.8 71 36-113 10-84 (97)
396 KOG1026|consensus 93.6 0.18 3.9E-06 59.5 7.7 152 553-721 201-358 (774)
397 PF02124 Marek_A: Marek's dise 93.3 4.4 9.5E-05 40.3 15.5 105 164-278 7-117 (211)
398 cd05890 Ig2_Nectin-1_like Seco 93.2 0.59 1.3E-05 39.4 7.9 66 151-220 23-88 (98)
399 KOG4258|consensus 93.1 0.1 2.2E-06 60.9 4.6 71 803-879 574-655 (1025)
400 PHA03042 CD47-like protein; Pr 92.2 0.53 1.1E-05 47.8 7.7 72 642-726 30-105 (286)
401 PF07354 Sp38: Zona-pellucida- 92.1 0.48 1E-05 48.0 7.3 50 54-113 11-60 (271)
402 KOG4597|consensus 92.1 0.16 3.5E-06 55.2 4.2 87 635-726 203-292 (560)
403 PRK14081 triple tyrosine motif 91.7 34 0.00074 40.6 49.7 254 402-658 302-607 (667)
404 PHA03282 envelope glycoprotein 91.7 5.8 0.00013 43.7 15.1 37 590-626 123-160 (540)
405 KOG3632|consensus 91.7 1.1 2.3E-05 53.3 10.4 169 763-940 674-882 (1335)
406 PHA03282 envelope glycoprotein 90.4 15 0.00032 40.7 16.6 53 418-474 109-162 (540)
407 PF03921 ICAM_N: Intercellular 89.4 8.9 0.00019 32.7 11.3 86 28-133 4-90 (91)
408 KOG4597|consensus 88.8 0.4 8.7E-06 52.2 3.7 81 545-626 197-291 (560)
409 PHA03042 CD47-like protein; Pr 88.1 2 4.3E-05 43.8 7.8 54 558-612 30-91 (286)
410 PF11465 Receptor_2B4: Natural 87.6 4.5 9.8E-05 35.1 8.5 35 690-724 70-105 (108)
411 PHA02865 MHC-like TNF binding 87.4 1.6 3.4E-05 46.8 7.0 22 645-666 216-238 (338)
412 PF07354 Sp38: Zona-pellucida- 86.3 1.4 3E-05 44.8 5.6 50 162-219 11-60 (271)
413 PHA03286 envelope glycoprotein 85.2 31 0.00068 38.1 15.3 80 435-514 125-228 (492)
414 PHA03281 envelope glycoprotein 84.9 32 0.0007 38.9 15.4 76 590-665 297-394 (642)
415 PF11465 Receptor_2B4: Natural 84.7 11 0.00023 32.9 9.3 66 407-472 29-106 (108)
416 PHA03283 envelope glycoprotein 84.3 21 0.00046 40.2 13.9 79 349-428 131-235 (542)
417 PF06328 Lep_receptor_Ig: Ig-l 82.8 8.2 0.00018 32.9 8.0 67 635-710 10-81 (89)
418 PHA03286 envelope glycoprotein 82.0 30 0.00064 38.3 13.5 78 349-427 124-226 (492)
419 KOG4258|consensus 80.2 3.1 6.7E-05 49.2 5.9 41 760-800 610-651 (1025)
420 PF03921 ICAM_N: Intercellular 79.7 19 0.00041 30.7 9.0 82 547-631 6-90 (91)
421 PF05790 C2-set: Immunoglobuli 79.6 18 0.00038 30.2 8.7 51 575-626 28-78 (80)
422 PF07204 Orthoreo_P10: Orthore 79.2 0.46 1E-05 39.3 -0.7 56 702-762 15-71 (98)
423 PHA02865 MHC-like TNF binding 78.7 5.3 0.00012 42.8 6.7 67 150-219 216-304 (338)
424 PHA03281 envelope glycoprotein 77.8 1.3E+02 0.0029 34.2 17.8 40 436-475 297-336 (642)
425 PF02010 REJ: REJ domain; Int 76.5 3.5 7.5E-05 47.7 5.2 115 44-170 2-124 (440)
426 PF05790 C2-set: Immunoglobuli 76.1 19 0.00042 29.9 8.0 35 691-725 43-78 (80)
427 PF00041 fn3: Fibronectin type 75.6 0.86 1.9E-05 38.3 -0.1 30 848-879 15-44 (85)
428 PF02480 Herpes_gE: Alphaherpe 75.3 5.7 0.00012 45.1 6.2 161 196-374 89-290 (439)
429 PHA03052 Hypothetical protein; 74.3 12 0.00025 29.5 5.6 38 551-588 4-44 (69)
430 KOG1026|consensus 74.3 6.5 0.00014 47.0 6.5 143 312-461 201-352 (774)
431 PF06328 Lep_receptor_Ig: Ig-l 73.3 12 0.00026 31.9 6.2 69 32-110 8-82 (89)
432 PF06832 BiPBP_C: Penicillin-B 72.5 48 0.001 28.2 10.0 56 645-719 31-86 (89)
433 PHA03052 Hypothetical protein; 72.0 18 0.00039 28.5 6.2 36 636-672 5-43 (69)
434 COG1470 Predicted membrane pro 71.4 1.8E+02 0.004 32.8 19.8 41 689-729 444-486 (513)
435 PF15102 TMEM154: TMEM154 prot 69.0 4.7 0.0001 37.2 3.0 16 743-758 70-85 (146)
436 PHA03189 UL14 tegument protein 68.8 62 0.0013 33.9 11.1 80 34-114 59-157 (348)
437 PF02010 REJ: REJ domain; Int 67.9 5.4 0.00012 46.1 4.1 111 401-511 204-340 (440)
438 PF15096 G6B: G6B family 63.8 12 0.00027 35.5 4.7 23 639-663 7-29 (224)
439 cd00063 FN3 Fibronectin type 3 60.4 8.6 0.00019 32.0 3.1 38 763-800 3-41 (93)
440 PF08693 SKG6: Transmembrane a 59.9 15 0.00033 25.7 3.4 7 734-740 13-19 (40)
441 PF06832 BiPBP_C: Penicillin-B 59.6 50 0.0011 28.1 7.6 55 320-380 31-85 (89)
442 PF08159 NUC153: NUC153 domain 59.6 3.2 6.9E-05 27.0 0.1 11 916-926 1-11 (30)
443 PHA03112 IL-18 binding protein 53.3 12 0.00025 34.6 2.7 74 38-111 34-117 (141)
444 PHA03112 IL-18 binding protein 51.7 36 0.00077 31.5 5.4 79 641-719 36-124 (141)
445 PHA03189 UL14 tegument protein 50.6 56 0.0012 34.2 7.2 75 551-625 59-167 (348)
446 PF01108 Tissue_fac: Tissue fa 48.3 6 0.00013 35.2 0.0 44 758-802 19-62 (107)
447 PF02439 Adeno_E3_CR2: Adenovi 47.4 2.1 4.4E-05 29.2 -2.2 24 735-758 9-32 (38)
448 KOG0200|consensus 46.6 81 0.0017 38.1 9.2 127 588-723 10-149 (609)
449 cd05890 Ig2_Nectin-1_like Seco 44.5 1E+02 0.0023 26.4 6.6 69 645-723 22-96 (98)
450 PF11141 DUF2914: Protein of u 44.4 1.6E+02 0.0035 23.4 8.3 62 656-725 4-65 (66)
451 PF05955 Herpes_gp2: Equine he 43.5 3.1E+02 0.0066 26.4 11.8 145 562-713 4-178 (226)
452 PF12988 DUF3872: Domain of un 43.5 90 0.0019 28.7 6.5 36 28-63 33-74 (137)
453 PF01034 Syndecan: Syndecan do 43.3 7.7 0.00017 30.1 -0.0 15 735-749 15-29 (64)
454 PF04478 Mid2: Mid2 like cell 43.0 30 0.00064 32.4 3.6 14 747-760 66-79 (154)
455 PF11141 DUF2914: Protein of u 39.2 1.5E+02 0.0033 23.6 6.7 55 332-387 5-65 (66)
456 KOG4802|consensus 38.6 27 0.00059 37.9 3.1 70 803-876 217-296 (516)
457 PF12877 DUF3827: Domain of un 37.3 16 0.00035 42.3 1.2 27 729-755 266-292 (684)
458 PHA03240 envelope glycoprotein 34.2 59 0.0013 32.0 4.3 59 553-612 32-125 (258)
459 PF01102 Glycophorin_A: Glycop 34.2 4.7 0.0001 36.4 -2.8 16 732-747 67-82 (122)
460 PF00801 PKD: PKD domain; Int 33.9 1.2E+02 0.0027 24.0 5.6 28 639-667 7-34 (69)
461 PF02440 Adeno_E3_CR1: Adenovi 33.6 1.8E+02 0.0038 23.0 6.0 21 39-62 2-22 (63)
462 smart00089 PKD Repeats in poly 32.7 2.7E+02 0.0058 22.6 7.7 64 642-725 13-78 (79)
463 PF04478 Mid2: Mid2 like cell 30.2 48 0.001 31.1 2.8 32 733-764 49-80 (154)
464 PF13908 Shisa: Wnt and FGF in 29.6 53 0.0011 32.4 3.4 23 925-947 156-179 (179)
465 PF10430 Ig_Tie2_1: Tie-2 Ig-l 29.4 3.5E+02 0.0075 22.8 7.8 71 645-716 17-89 (96)
466 PHA03240 envelope glycoprotein 28.5 88 0.0019 30.8 4.4 79 142-221 32-130 (258)
467 PF11857 DUF3377: Domain of un 27.7 1.4E+02 0.0029 24.3 4.5 35 718-752 15-49 (74)
468 KOG1924|consensus 27.4 1.5E+02 0.0032 35.5 6.6 15 989-1005 634-648 (1102)
469 cd00063 FN3 Fibronectin type 3 27.3 42 0.00091 27.6 2.0 28 847-876 15-42 (93)
470 PRK02710 plastocyanin; Provisi 27.2 1E+02 0.0023 27.9 4.6 19 30-48 42-60 (119)
471 PF05454 DAG1: Dystroglycan (D 25.9 23 0.00049 37.6 0.0 7 942-948 282-288 (290)
472 PF13216 DUF4024: Protein of u 24.8 33 0.00071 21.9 0.5 11 1001-1011 25-35 (35)
473 KOG4152|consensus 24.3 69 0.0015 36.0 3.2 65 803-873 655-727 (830)
474 PF15069 FAM163: FAM163 family 24.3 34 0.00073 31.6 0.8 20 736-755 9-28 (143)
475 PF02440 Adeno_E3_CR1: Adenovi 23.8 1.3E+02 0.0027 23.8 3.7 21 640-665 2-22 (63)
476 PF11049 KSHV_K1: Glycoprotein 23.0 2.6E+02 0.0057 22.1 5.1 51 575-633 12-62 (71)
477 smart00816 Amb_V_allergen Amb 22.0 45 0.00097 23.0 0.8 8 997-1004 30-37 (45)
478 PF13908 Shisa: Wnt and FGF in 21.9 76 0.0016 31.3 2.9 22 732-753 78-99 (179)
479 PF14991 MLANA: Protein melan- 21.7 29 0.00062 30.4 -0.2 10 825-834 94-103 (118)
480 PF01102 Glycophorin_A: Glycop 21.4 23 0.00049 32.1 -0.9 31 732-762 64-94 (122)
481 PF14575 EphA2_TM: Ephrin type 21.0 14 0.00031 30.2 -2.0 23 738-760 6-28 (75)
482 PF15102 TMEM154: TMEM154 prot 20.7 82 0.0018 29.4 2.5 30 734-763 58-87 (146)
483 smart00089 PKD Repeats in poly 20.7 4.6E+02 0.0099 21.2 7.5 63 558-626 13-78 (79)
484 PF01108 Tissue_fac: Tissue fa 20.1 40 0.00087 29.9 0.4 49 824-879 16-64 (107)
No 1
>KOG3513|consensus
Probab=100.00 E-value=1.1e-80 Score=713.22 Aligned_cols=658 Identities=21% Similarity=0.313 Sum_probs=529.3
Q ss_pred cceeecCCceeEE-ecCc--EEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecc-cCCC
Q psy17146 28 QKFAMEPQDQTAV-VGSR--VTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVM-LDDD 102 (1011)
Q Consensus 28 p~~~~~p~~~~v~-~G~~--v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~-~~D~ 102 (1011)
|.|...|.+..+. .-+. ++|.|.+.+ |.+.+.|+|||..+.. ....++.+. ..+|.|.+.. ..|+
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~----~~~~~~~~~------~G~lvI~~p~~~~d~ 109 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDP----TEYPRVSVL------GGTLVITNPDAALDQ 109 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeeccc----ccccceeee------cCceEecCCcchhhc
Confidence 8888888765444 3344 999999998 7889999999987643 333455554 2268888888 8899
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
|.|+|.|+|..+ ...|..+.|.....+..+ -...+.+++.+|+.+.|.|..-.+.|.+.+.|..+...-..
T Consensus 110 G~YqC~AsN~~G---ta~S~~~~l~~~~i~~F~-~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~----- 180 (1051)
T KOG3513|consen 110 GIYQCFASNKLG---TAVSREARLQFGFIPKFK-KEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFV----- 180 (1051)
T ss_pred ceeEEEeecccc---eeeccceeecccccccCc-cccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCccc-----
Confidence 999999999754 346777777766544322 12345788999999999998778889999999986544321
Q ss_pred EeeecCCc-eEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcc
Q psy17146 183 EEASVDGR-RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAE 261 (1011)
Q Consensus 183 ~~~~~~~~-~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~ 261 (1011)
.....| .....+.|.|.++..+|.+.|.|.|.+....... ..+.+.+....... .
T Consensus 181 --~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v---------~~~~~~L~~~~~~~-------------~ 236 (1051)
T KOG3513|consen 181 --QIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIV---------QGPPFPLIVRSNNV-------------M 236 (1051)
T ss_pred --ccCcceeEecccceEEEeecchhhcCceEEEEEchhhcccc---------cCCceeEEEccccc-------------c
Confidence 111111 2233468999999999999999999984333211 11212222110000 0
Q ss_pred cCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEEC
Q psy17146 262 ANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIN 341 (1011)
Q Consensus 262 ~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~ 341 (1011)
+.. .-...+.+.+......|+.+.|+|.+.|+|.| +|.|.|.
T Consensus 237 ~~~-------------------------------------~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P-~i~W~k~ 278 (1051)
T KOG3513|consen 237 REY-------------------------------------APKILVPFPETETALKGQSVKLECFALGNPTP-QIKWRKV 278 (1051)
T ss_pred ccc-------------------------------------CCccccCCCCcccccCCCeEEEEEEecCCCCC-cEEEEeC
Confidence 000 00000111234567889999999999999998 9999998
Q ss_pred Ce-ecCC----CcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCC
Q psy17146 342 DQ-PVPA----AASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDG 416 (1011)
Q Consensus 342 g~-~l~~----~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g 416 (1011)
+. +++. ......|.|.+++.+ |+|.|+|.|+|..|.......|.|..+|.+...+++..+..|++++|.|.+.|
T Consensus 279 ~g~~~~~r~~~~~~~~vL~I~nv~~~-D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g 357 (1051)
T KOG3513|consen 279 DGKPPPRRATYSNYGKVLKIPNVQYE-DAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASG 357 (1051)
T ss_pred CCCCCCcceeeeccccEEEecccCcC-CCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecC
Confidence 77 4332 256789999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeCCCce--------eeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccC
Q psy17146 417 NPAPEITWIHEDSDK--------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIP 488 (1011)
Q Consensus 417 ~p~p~v~W~k~~~~~--------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~ 488 (1011)
.|.|+|+|++|+..+ ..-..+.|+|.+++.+|+|+|+|.|+
T Consensus 358 ~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~------------------------------- 406 (1051)
T KOG3513|consen 358 KPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAE------------------------------- 406 (1051)
T ss_pred CCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeee-------------------------------
Confidence 999999999998543 34457889999999999999999999
Q ss_pred CCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEec-ceeecCCce--EEEcCCCcEEEE
Q psy17146 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYG-PRFRARPYS--VQVDRGAGVNLL 565 (1011)
Q Consensus 489 g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~-P~~~~~p~~--~~v~~G~~~~l~ 565 (1011)
|..|..-+++.|.|... |.|...|.. +.+..|..+.|.
T Consensus 407 ---------------------------------------Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~ 447 (1051)
T KOG3513|consen 407 ---------------------------------------NKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTID 447 (1051)
T ss_pred ---------------------------------------cccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEe
Confidence 55666777778888754 888877754 478899999999
Q ss_pred EEEecCCCCeEEEEecCC------ceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeec-CCce
Q psy17146 566 CDVDGNPAPEITWIHEDS------DKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS-HRTQ 638 (1011)
Q Consensus 566 C~~~g~p~p~v~W~k~~~------~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~-~~~~ 638 (1011)
|.+.+.|.|.+.|.|+++ ++.+..+++|.|.+++.+|+|.|+|.|+| ..|.+...++|.|+++++|+. +...
T Consensus 448 C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N-~~G~a~~~~~L~Vkd~tri~~~P~~~ 526 (1051)
T KOG3513|consen 448 CKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAEN-KLGKAESTGNLIVKDATRITLAPSNT 526 (1051)
T ss_pred eccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEc-ccCccceEEEEEEecCceEEeccchh
Confidence 999999999999999875 34566789999999999999999999999 799999999999999999994 5677
Q ss_pred eeecCCcEEEEEEEEecCCC-CeEEEEECCeEecccCCC-CeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 639 FGIPGDTARVECSAFSIPPP-EKVTWSYRGEEIGVGSSD-DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~p~p-~~v~W~~~g~~l~~~~~~-~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
.+..|+.++|+|++..++.. +.+.|++||..++..... ++.+... ...+.|+|.+++..|+|.|.|+|...+.+
T Consensus 527 ~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~----~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds 602 (1051)
T KOG3513|consen 527 DVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDG----SDSGRLTIANVSLEDSGKYTCVAQTALDS 602 (1051)
T ss_pred hhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCC----cCccceEEEeeccccCceEEEEEEEeecc
Confidence 79999999999999988773 378999999999874444 4444332 22268999999999999999999998888
Q ss_pred eEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCC-CCCCCcccccccccccccc-cCCCCCCCCcCcc
Q psy17146 717 DSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKP-PPGNGIEHHVTADGEKNQC-KESDNSSNISDIK 794 (1011)
Q Consensus 717 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ 794 (1011)
.++.+.|.| + .+| ||.++.+.+++++++.|+| ++.||+|||..|.
T Consensus 603 ~s~~A~l~V--------------------------------~-gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~ 649 (1051)
T KOG3513|consen 603 ASARADLLV--------------------------------R-GPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYT 649 (1051)
T ss_pred hhcccceEE--------------------------------e-cCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEe
Confidence 888888887 3 455 8889999999999999999 9999999999999
Q ss_pred eeeecCcc------------------------cccccccc---c---CCCCCCC--cccccccccccccccccCCccccc
Q psy17146 795 LEFRTGSS------------------------VSNVHLDY---A---GHDSETG--SESVHTRIGVPLAGPVPMDQRYHR 842 (1011)
Q Consensus 795 ve~~~~~~------------------------~p~~~Y~f---A---~G~g~~s--s~~~~t~~~~P~~~P~~~~~~~~~ 842 (1011)
||+|+... .||++|+| | +|.|+|| |..++|.+++|..+|.+|.+++++
T Consensus 650 iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~ 729 (1051)
T KOG3513|consen 650 IQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGS 729 (1051)
T ss_pred EEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCC
Confidence 99998755 89999999 6 9999999 999999999999999999999844
Q ss_pred ccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCC
Q psy17146 843 YSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQT 878 (1011)
Q Consensus 843 ~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~ 878 (1011)
..++ +|+|+|++++.+||+++||+|.||+++..
T Consensus 730 ~~eL---vItW~Pl~~~~qNG~gfgY~Vswr~~g~~ 762 (1051)
T KOG3513|consen 730 PTEL---VITWEPLPEEEQNGPGFGYRVSWRPQGAD 762 (1051)
T ss_pred CceE---EEEeccCCHHHccCCCceEEEEEEeCCCC
Confidence 4333 66999999999999999999999999999
No 2
>KOG3513|consensus
Probab=100.00 E-value=1.9e-56 Score=513.88 Aligned_cols=650 Identities=18% Similarity=0.225 Sum_probs=486.1
Q ss_pred ccee-ecCCceeEEecCcEEEEEEEcC--CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 28 QKFA-MEPQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 28 p~~~-~~p~~~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
+.|. .+.+.+.+.+|+.+.|.|.... +...+.|..+..+.. ......|+.+.. ...|.|.+|..+|.+.
T Consensus 136 ~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~---~~~~~~r~~~~~-----~G~Lyfs~V~~~D~~~ 207 (1051)
T KOG3513|consen 136 PKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHF---VQIDNRRVFSQE-----NGNLYFSNVETSDFGN 207 (1051)
T ss_pred ccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcc---cccCcceeEecc-----cceEEEeecchhhcCc
Confidence 4555 4677899999999999999875 556899999886531 111223554432 3379999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEc----CCCCCeee--cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeec
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLV----PPDPPRIV--QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSN 178 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~----~p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~ 178 (1011)
|.|.+.+.. .........+.|++.. ...+|.+. .++......|+.+.|+|- +.|+|.|+|.|.|.++.....
T Consensus 208 Y~C~a~~~~-~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECf-A~G~P~P~i~W~k~~g~~~~~ 285 (1051)
T KOG3513|consen 208 YICSATFPS-TQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECF-ALGNPTPQIKWRKVDGKPPPR 285 (1051)
T ss_pred eEEEEEchh-hcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEE-ecCCCCCcEEEEeCCCCCCCc
Confidence 999998832 2334556667777731 12233333 233567788999999999 899999999999998864332
Q ss_pred eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEE
Q psy17146 179 VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYC 258 (1011)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C 258 (1011)
... ......+|.|.++..+|+|.|+|.|.|..|.. ...+.|.|...|..... +
T Consensus 286 r~~---------~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~--~~~~~v~v~a~P~w~~~-~--------------- 338 (1051)
T KOG3513|consen 286 RAT---------YSNYGKVLKIPNVQYEDAGEYECIAENSRGSA--THSGHVTVYAPPYWLQK-P--------------- 338 (1051)
T ss_pred cee---------eeccccEEEecccCcCCCeEEEEEEecccccc--eeeEEEEEecCchhhcc-c---------------
Confidence 211 11223589999999999999999999999965 77788888888876432 1
Q ss_pred EcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEE
Q psy17146 259 KAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRW 338 (1011)
Q Consensus 259 ~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W 338 (1011)
.+..+..|++++|.|.+.|.|.| +|+|
T Consensus 339 ----------------------------------------------------~d~~~~~gs~v~~eC~a~g~P~p-~v~W 365 (1051)
T KOG3513|consen 339 ----------------------------------------------------QDTEADTGSNVTLECKASGKPNP-TVKW 365 (1051)
T ss_pred ----------------------------------------------------ceeEecCCCCeEEEEEecCCCCC-ceEE
Confidence 34566778888888888888887 8999
Q ss_pred EECCeecCCCc-------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEec-ceEeeCCCce--EecCCCcE
Q psy17146 339 YINDQPVPAAA-------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYG-PRFRARPYSV--QVDRGAGV 408 (1011)
Q Consensus 339 ~k~g~~l~~~~-------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~-P~~~~~p~~~--~v~~G~~v 408 (1011)
+|||.++.... ....|.|.+++.. |+|.|+|.|+|..|....++.|.|... |.|...|... .+..|..+
T Consensus 366 lkNg~pl~~~~r~~~~~i~~g~L~is~v~~~-dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v 444 (1051)
T KOG3513|consen 366 LKNGEPLEPAERDPRYKIDDGTLIISNVQES-DSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTV 444 (1051)
T ss_pred eeCCeecCccCCCcceEEeCCEEEEEecccc-cCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeE
Confidence 99998887543 3578999999998 999999999999999999999999985 8888877554 68889999
Q ss_pred EEEeecCCCCCCceEEEeCCCc------eeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccC
Q psy17146 409 NLLCDVDGNPAPEITWIHEDSD------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHR 482 (1011)
Q Consensus 409 ~l~C~~~g~p~p~v~W~k~~~~------~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~ 482 (1011)
.|.|...+.|.|.+.|.|.+.. +....+++|.|.+++.+|+|.|+|.|+
T Consensus 445 ~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~------------------------- 499 (1051)
T KOG3513|consen 445 TIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAE------------------------- 499 (1051)
T ss_pred EEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEE-------------------------
Confidence 9999999999999999998762 235578999999999999999999998
Q ss_pred cccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcE
Q psy17146 483 TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGV 562 (1011)
Q Consensus 483 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~ 562 (1011)
|..|..+..+.|.|+.+++|...|.+..+..|+.+
T Consensus 500 ---------------------------------------------N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v 534 (1051)
T KOG3513|consen 500 ---------------------------------------------NKLGKAESTGNLIVKDATRITLAPSNTDVKVGESV 534 (1051)
T ss_pred ---------------------------------------------cccCccceEEEEEEecCceEEeccchhhhccCceE
Confidence 67788888999999999999999999999999999
Q ss_pred EEEEEEecCCCC--eEEEEecCCceee--------c----CCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcC
Q psy17146 563 NLLCDVDGNPAP--EITWIHEDSDKVV--------G----NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG 628 (1011)
Q Consensus 563 ~l~C~~~g~p~p--~v~W~k~~~~~~~--------~----~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 628 (1011)
+|.|.+.-.+.. .+.|.+||..+.. . +.+.|+|.++...|+|.|.|+|.. ...+.++.+.|.|..
T Consensus 535 ~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT-~~Ds~s~~A~l~V~g 613 (1051)
T KOG3513|consen 535 TLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQT-ALDSASARADLLVRG 613 (1051)
T ss_pred EEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEE-eecchhcccceEEec
Confidence 999999766654 7889999854321 1 125699999999999999999998 678899999999998
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecC-CCCeEEEEECCeEecccCCCCeEEecCC-cCccceeEEEEcCCCCCCCEEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGSSDDYSVLEDP-LKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p-~p~~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
||--...-...-....++.|+...-.+- .|+ .......+.-. ........... ...+. .+-.+.++.+--.++|
T Consensus 614 pPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI-~~Y~iq~rt~~--~~~W~~v~~vp~~~~~~-~sa~vv~L~Pwv~YeF 689 (1051)
T KOG3513|consen 614 PPGPPPDVHVDDISDTTARLSWSPGSDNNSPI-EKYTIQFRTPF--PGKWKAVTTVPGNITGD-ESATVVNLSPWVEYEF 689 (1051)
T ss_pred CCCCCCceeEeeeccceEEEEeecCCCCCCCc-eEEeEEecCCC--CCcceEeeECCCcccCc-cceeEEccCCCcceEE
Confidence 8763321111123345566666544332 231 11111000000 11111111110 01111 2456778888889999
Q ss_pred EEEEEcCCCCeEEEE---EEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCC-CCCCCcccccccccccccc-
Q psy17146 707 NCSVSNPYGSDSVEI---MLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKP-PPGNGIEHHVTADGEKNQC- 781 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~p~~~~~~~~~~~s~~~~W- 781 (1011)
+.+|.|..|....+. .+... ...|. .|.++....-....+.++|
T Consensus 690 RV~AvN~iG~gePS~pS~~~rT~-------------------------------ea~P~~~P~nv~g~g~~~~eLvItW~ 738 (1051)
T KOG3513|consen 690 RVVAVNSIGIGEPSPPSEKVRTP-------------------------------EAAPSVNPSNVKGGGGSPTELVITWE 738 (1051)
T ss_pred EEEEEcccccCCCCCCccceecC-------------------------------CCCCccCCccccccCCCCceEEEEec
Confidence 999999999654332 22221 11333 8899999999999999999
Q ss_pred --cCCCCCCCCcCcceeeecCcc------------------------cccccccc---c---CCCCCCC-cccccccccc
Q psy17146 782 --KESDNSSNISDIKLEFRTGSS------------------------VSNVHLDY---A---GHDSETG-SESVHTRIGV 828 (1011)
Q Consensus 782 --~~~d~~s~I~~Y~ve~~~~~~------------------------~p~~~Y~f---A---~G~g~~s-s~~~~t~~~~ 828 (1011)
++.+.+++=.+|+|.+|.... .|++.|+. | .|+|..| ...+...|+.
T Consensus 739 Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~ 818 (1051)
T KOG3513|consen 739 PLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDE 818 (1051)
T ss_pred cCCHHHccCCCceEEEEEEeCCCCcccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCC
Confidence 666778899999999987544 56777777 4 7888777 6678899999
Q ss_pred cccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 829 PLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 829 P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
|..+|..+.....+. +...++|+||.. .||...||.|+|.+.+..+
T Consensus 819 P~~ap~~~~~~~~s~---s~~~v~W~~~~~--~nG~l~gY~v~Y~~~~~~~ 864 (1051)
T KOG3513|consen 819 PPVAPTKLSAKPLSS---SEVNLSWKPPLW--DNGKLTGYEVKYWKINEKE 864 (1051)
T ss_pred CCCCCccceeecccC---ceEEEEecCcCc--cCCccceeEEEEEEcCCCc
Confidence 999999998877222 223559999654 4599999999999999886
No 3
>KOG4221|consensus
Probab=100.00 E-value=4.3e-51 Score=464.20 Aligned_cols=648 Identities=17% Similarity=0.197 Sum_probs=461.2
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeeccc--
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVML-- 99 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~-- 99 (1011)
..+-.|.++|+|. .+|..+.|.|..... ...|.|.|||..+.... .+|...+.++ +|.|.++..
T Consensus 39 ~~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~----d~~~~~LsNg-----Sl~i~~v~~~k 107 (1381)
T KOG4221|consen 39 NTPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVY----DDRRQLLSNG-----SLYISSVLASK 107 (1381)
T ss_pred cCcceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhh----hhHHhhccCC-----ceeEeeecccc
Confidence 3466788999965 999999999998753 45899999997764332 2455555443 799999888
Q ss_pred ---CCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceee
Q psy17146 100 ---DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVM 176 (1011)
Q Consensus 100 ---~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~ 176 (1011)
-|+|.|+|.+.-.+. ..+.+..+.|.+...+. +........+..|+.+.|.|. +.+.|.+.+.|.|++..+.
T Consensus 108 h~~~~eg~Yqc~atv~~~--gsi~Sr~a~v~~a~~~~--f~~~~~~~t~~~g~ta~f~c~-vn~e~~p~i~w~kn~~pl~ 182 (1381)
T KOG4221|consen 108 HNKVDEGVYQCLATVEDV--GSILSRTAKVALAGLAD--FALQPESTTLLYGQTALFSCE-VNAEPVPTIMWLKNDQPLP 182 (1381)
T ss_pred cccccCceEEEEEEcccc--ceeecceEEEEecccCc--cccCccceeEecCCcEEEEEE-EcCccCceeEEeccccccc
Confidence 689999999986533 35678888888876654 333444667789999999999 7789999999999998776
Q ss_pred eceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEE
Q psy17146 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256 (1011)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L 256 (1011)
.+.++. ...+ +.|.|..+...|.|.|+|.+.+..... .+....|+|...|.......
T Consensus 183 ~~~r~i--~lps-------G~L~I~~~qp~d~g~yrc~vt~g~~~r-~S~~a~ltv~s~~~~~~~~~------------- 239 (1381)
T KOG4221|consen 183 LDSRVI--VLPS-------GALEISGLQPSDTGEYRCVVTGGASQR-TSNEAELTVLSDPGALNKLV------------- 239 (1381)
T ss_pred CCCcEE--EcCC-------CcEEecccccCCCceEEEEEecCCcCC-ccceeEEEecCCccccccee-------------
Confidence 655432 3333 489999999999999999999875543 35556666653333211100
Q ss_pred EEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEE
Q psy17146 257 YCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKY 336 (1011)
Q Consensus 257 ~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i 336 (1011)
.+.-.....+.+|+++.|+|.+.+.|.| .+
T Consensus 240 -------------------------------------------------fl~~p~~~~v~~g~~v~leCvvs~~p~p-~v 269 (1381)
T KOG4221|consen 240 -------------------------------------------------FLDEPSNAVVVEGDDVVLECVVSGVPKP-SV 269 (1381)
T ss_pred -------------------------------------------------eecCCCccccccCCcEEEEEEecCCCCC-ce
Confidence 0011245678899999999999999987 99
Q ss_pred EEEECCeecCCCc------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEE
Q psy17146 337 RWYINDQPVPAAA------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNL 410 (1011)
Q Consensus 337 ~W~k~g~~l~~~~------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l 410 (1011)
.|.|||..+..+. ....|.|.+++.. |+|.|+|+|.|......+++.|+|..+|.|...|.+..+.++.++.|
T Consensus 270 ~Wlrng~~i~~ds~rivl~g~~slliS~a~~~-dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ 348 (1381)
T KOG4221|consen 270 KWLRNGEKISVDSYRIVLVGGSSLLISNATDD-DSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEF 348 (1381)
T ss_pred EEeeCCeeeeecceEEEEecccceEEeccccc-cCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeE
Confidence 9999999987753 2567889999987 99999999999777778999999999999999999999999999999
Q ss_pred EeecCCCCCCceEEEeCCCcee------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcc
Q psy17146 411 LCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 484 (1011)
Q Consensus 411 ~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~ 484 (1011)
+|.+.|.|.|.+.|+|++...+ ....+.|.|..+-..|.|.|+|.++|..+. ..+.+.+.+...|....
T Consensus 349 ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~-a~a~a~l~vv~~p~~~~---- 423 (1381)
T KOG4221|consen 349 ECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGS-AQAAAQLEVVPQPASAS---- 423 (1381)
T ss_pred eCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCccc-ccchhhheeccCCcccc----
Confidence 9999999999999999986533 333445999999999999999999974322 11222221111111000
Q ss_pred cccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEE
Q psy17146 485 FGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNL 564 (1011)
Q Consensus 485 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l 564 (1011)
.+.+...|.++.+..-+...+
T Consensus 424 -----------------------------------------------------------s~~~~sap~~lv~~~~~srfi 444 (1381)
T KOG4221|consen 424 -----------------------------------------------------------SDLLPSAPRDLVANLVSSRFI 444 (1381)
T ss_pred -----------------------------------------------------------cCccccCCcceecccccceeE
Confidence 011112222333333333333
Q ss_pred EEE-----EecCCCCeEEEEecCCce------eecCCCcEEEeecCCCCCEEEEEEEE--ecCCCceeeEEEEEEcCCCe
Q psy17146 565 LCD-----VDGNPAPEITWIHEDSDK------VVGNSPNLTLLMTSDDLAGRYYCKAS--VMGFPEVGAEATVYLKGRPT 631 (1011)
Q Consensus 565 ~C~-----~~g~p~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~d~G~Y~C~a~--n~~~~~~s~~~~l~V~~~P~ 631 (1011)
.|. ..+.+.+.++|++..+.. .....+ +.+...+...++.|.|++. | ..|+...+..|.|..+|.
T Consensus 445 ~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g-~~~tv~nl~p~t~Y~~rv~A~n-~~g~g~sS~pLkV~t~pE 522 (1381)
T KOG4221|consen 445 QLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPG-IQVTVQNLSPLTMYFFRVRAKN-EAGSGESSAPLKVTTQPE 522 (1381)
T ss_pred EEeecCccccCCCcceEEEEEecCCchhhhheeccCCc-eEEEeeecccceeEEEEEeccC-cccCCccCCceEEecCCC
Confidence 333 455566788998764332 122223 6666667777777766665 5 567777777888877776
Q ss_pred eecCCceeeecCCcEEEEEEEEecCCCC---eEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 632 IISHRTQFGIPGDTARVECSAFSIPPPE---KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 632 i~~~~~~~v~~G~~v~L~C~~~g~p~p~---~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
.+.. ...+..-.++|.+...|++. .|+|||...... +....+.+..+ ..+++|.++.+.+.+.|+|
T Consensus 523 ---gp~~-~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~-~~~~~~~~~~n------~~e~ti~gL~k~TeY~~~v 591 (1381)
T KOG4221|consen 523 ---GPVQ-LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED-DTGKELRVENN------ATEYTINGLEKYTEYSIRV 591 (1381)
T ss_pred ---CCcc-ccccccCcceEEEEecCCCCCCCCceEEEEEEEcC-CCCceEEEecC------ccEEEeecCCCccceEEEE
Confidence 2223 55666778899999887752 699999876655 23344444443 5799999999999999999
Q ss_pred EEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCC-CCCCCcccccccccccccc---cCC
Q psy17146 709 SVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKP-PPGNGIEHHVTADGEKNQC---KES 784 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~p~~~~~~~~~~~s~~~~W---~~~ 784 (1011)
+|.|.+|....+..+.|... ...|. ||.|+++...+++++.++| +..
T Consensus 592 vA~N~~G~g~sS~~i~V~Tl-----------------------------sd~PsaPP~Nl~lev~sStsVrVsW~pP~~~ 642 (1381)
T KOG4221|consen 592 VAYNSAGSGVSSADITVRTL-----------------------------SDVPSAPPQNLSLEVVSSTSVRVSWLPPPSE 642 (1381)
T ss_pred EEecCCCCCCCCCceEEEec-----------------------------cCCCCCCCcceEEEecCCCeEEEEccCCCcc
Confidence 99999998766666665321 22344 7888999999999999999 455
Q ss_pred CCCCCCcCcceeeecCcc---------------------cccccccc---c---CCCCCCC-ccccccccccccc----c
Q psy17146 785 DNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A---GHDSETG-SESVHTRIGVPLA----G 832 (1011)
Q Consensus 785 d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A---~G~g~~s-s~~~~t~~~~P~~----~ 832 (1011)
+.+..|++|+|.|+.... .|.++|.| | .|.|.+| -....|++..+.. +
T Consensus 643 t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ 722 (1381)
T KOG4221|consen 643 TQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGK 722 (1381)
T ss_pred cccceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCC
Confidence 567899999999996433 89999999 4 8999999 4446677664443 2
Q ss_pred cccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeec
Q psy17146 833 PVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRD 874 (1011)
Q Consensus 833 P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~ 874 (1011)
|..+.... -.++..+.|+||+ ..|-.+.||+|.||+
T Consensus 723 ps~l~~~~----g~~si~vsW~Pp~--~~~~~vrgY~ig~r~ 758 (1381)
T KOG4221|consen 723 PSELHVHP----GSNSIVVSWTPPP--HPNIVVRGYKIGYRP 758 (1381)
T ss_pred Cceeeecc----CceeEEEEeCCCC--ChhhhhcceEEeeec
Confidence 22222222 1223355999954 455577889999984
No 4
>KOG4222|consensus
Probab=100.00 E-value=3.1e-50 Score=454.88 Aligned_cols=577 Identities=22% Similarity=0.331 Sum_probs=434.6
Q ss_pred CCCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe-eecCCceEEEEEEEEEeec-----cC
Q psy17146 133 DPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE-ASVDGRRTTVKSTLVLTPK-----KE 205 (1011)
Q Consensus 133 ~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~-~~~~~~~~~~~~~L~I~~~-----~~ 205 (1011)
.+|.|. .+..+.+..|+.++|.|. +.|.|+|+|+|||+|+....+..-... ...++ +|.+..+ ..
T Consensus 30 ~~p~iiehp~d~vvs~~~patlnc~-asG~ppPti~w~k~G~~~~~~e~~shR~~lp~g-------sLf~l~~ahg~~a~ 101 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSKGEPATLNCK-ASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDG-------SLFLLRLAHGKKAG 101 (1281)
T ss_pred CCCceEecchhhhccCCCCceeecC-CCCCCCCceecccCCcccCCCCCCCcceecCCc-------cEEEEecccCCccc
Confidence 344444 344666788999999999 899999999999999755442111000 12222 3333221 23
Q ss_pred cCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccc
Q psy17146 206 HHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASAT 285 (1011)
Q Consensus 206 ~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~ 285 (1011)
.|.|.|+|.|+|..|.+ .+....|.+...+...-..+....+..|+.+.|+|......+.+.++|.|+|+++....
T Consensus 102 ~d~G~y~cvasn~~g~a-vSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~--- 177 (1281)
T KOG4222|consen 102 HDHGVYSCVASNRLGEA-VSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYD--- 177 (1281)
T ss_pred CCCceeEeeecCcccee-eecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccccc---
Confidence 49999999999999987 23333343333332221222235566788888888877777777777777776553110
Q ss_pred eEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCC
Q psy17146 286 ELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHD 365 (1011)
Q Consensus 286 ~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~ 365 (1011)
.++.....++.|.|.++.+. |+
T Consensus 178 ---------------------------------------------------------~~~~~lisgG~LlIsnvrks-D~ 199 (1281)
T KOG4222|consen 178 ---------------------------------------------------------VPIIALISGGNLLISNVRKS-DE 199 (1281)
T ss_pred ---------------------------------------------------------ceeEEEecCCcEEEeccccC-CC
Confidence 00001135678999999998 99
Q ss_pred cEEEEEEEcCCccc-eeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce------eeccCCc
Q psy17146 366 SIVKCEVHNDVGKS-EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK------VVGNSPN 438 (1011)
Q Consensus 366 G~Y~C~a~n~~g~~-~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~------~~~~~~~ 438 (1011)
|.|.|++.|..|.. +..++|.|.++|.|...|.+..+..|..+.+.|.+.|+|.|.+.|.|++... +..++.+
T Consensus 200 GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qt 279 (1281)
T KOG4222|consen 200 GTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQT 279 (1281)
T ss_pred ceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeecccc
Confidence 99999999999986 5789999999999999999999999999999999999999999999987543 3455688
Q ss_pred EEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeec
Q psy17146 439 LTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV 518 (1011)
Q Consensus 439 L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~ 518 (1011)
|.|..++..|.|.|.|.|+
T Consensus 280 l~i~r~tp~deg~y~C~a~------------------------------------------------------------- 298 (1281)
T KOG4222|consen 280 LRIDRVTPTDEGTYVCPAE------------------------------------------------------------- 298 (1281)
T ss_pred ccccccCCCcccceeeecc-------------------------------------------------------------
Confidence 9999999999999999998
Q ss_pred cCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee-----------
Q psy17146 519 GSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------- 587 (1011)
Q Consensus 519 ~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~----------- 587 (1011)
|.+|..+..+.++|+.+|.|...|.+..+..|..++|.|.+.|+|.|.+.|.|.|.....
T Consensus 299 ---------n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r 369 (1281)
T KOG4222|consen 299 ---------NLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGR 369 (1281)
T ss_pred ---------ccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCcc
Confidence 677888999999999999999999999999999999999999999999999999855332
Q ss_pred ---cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE----c-CC-Ceee-cCCceeeecCCcEEEEEEEEecCC
Q psy17146 588 ---GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL----K-GR-PTII-SHRTQFGIPGDTARVECSAFSIPP 657 (1011)
Q Consensus 588 ---~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V----~-~~-P~i~-~~~~~~v~~G~~v~L~C~~~g~p~ 657 (1011)
...++|+|.+++..|.|.|.|...+............++ . .| |.|. .+.+++..+|..+.|.|.+.|.|.
T Consensus 370 ~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~ 449 (1281)
T KOG4222|consen 370 GSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPT 449 (1281)
T ss_pred ceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCC
Confidence 234699999999999999999987632222222222221 2 34 4454 456788888999999999999999
Q ss_pred CCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEe
Q psy17146 658 PEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTG 737 (1011)
Q Consensus 658 p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~ 737 (1011)
| .+.|+++|-.+...+ .+..+.. .++|+|.++...|.|.|+|+|.+..|+.+-+++|.|.+......
T Consensus 450 p-~i~wl~dg~~v~~~d-~~~s~~~-------~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q---- 516 (1281)
T KOG4222|consen 450 P-NISWLKDGCNVMNPD-SRISQQE-------IGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQ---- 516 (1281)
T ss_pred C-CchhhhcccccccCC-cccceee-------eceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccc----
Confidence 9 999999998887533 3333332 47999999999999999999999999999999999976522100
Q ss_pred eehHHHHHHHhhhheeeeeeccC-CCCCCCCcccccccccccccccCCC--CCCCCcCcceeeecCcc------------
Q psy17146 738 VIGCVVILVALTMVVILCQRKVK-KPPPGNGIEHHVTADGEKNQCKESD--NSSNISDIKLEFRTGSS------------ 802 (1011)
Q Consensus 738 ~~~~~~~~~~l~~~~~~~~~~~~-~~~p~~~~~~~~~~~s~~~~W~~~d--~~s~I~~Y~ve~~~~~~------------ 802 (1011)
++.+..-.. +.+|....+.+++..++.++|.+.+ +.-|+++|++++-....
T Consensus 517 --------------~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~ 582 (1281)
T KOG4222|consen 517 --------------FCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVK 582 (1281)
T ss_pred --------------cccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccccc
Confidence 011111112 2277888999999999999993333 56799999999654321
Q ss_pred --------------------------------------------------------------------------------
Q psy17146 803 -------------------------------------------------------------------------------- 802 (1011)
Q Consensus 803 -------------------------------------------------------------------------------- 802 (1011)
T Consensus 583 ~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w 662 (1281)
T KOG4222|consen 583 TTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGW 662 (1281)
T ss_pred cceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeee
Confidence
Q ss_pred ----------------------------------------------cccccccc-c--------CCCCCCC-cccccccc
Q psy17146 803 ----------------------------------------------VSNVHLDY-A--------GHDSETG-SESVHTRI 826 (1011)
Q Consensus 803 ----------------------------------------------~p~~~Y~f-A--------~G~g~~s-s~~~~t~~ 826 (1011)
.|++.|+| . .-.|.++ +..+.|.+
T Consensus 663 ~~~kq~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e 742 (1281)
T KOG4222|consen 663 TKDKQHGSQYIQGYRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLE 742 (1281)
T ss_pred eeecccCcccccceEEEeccCccccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccc
Confidence 78889999 2 3457777 88899999
Q ss_pred cccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccC
Q psy17146 827 GVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYN 876 (1011)
Q Consensus 827 ~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~ 876 (1011)
++|+++|.++..-......++...++|.|++.+.+||+.+||.|+.---.
T Consensus 743 ~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e 792 (1281)
T KOG4222|consen 743 EPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECSGGE 792 (1281)
T ss_pred cCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEeecCc
Confidence 99999999975544333356666779999999999999999998765544
No 5
>KOG4221|consensus
Probab=100.00 E-value=1.8e-48 Score=443.01 Aligned_cols=537 Identities=17% Similarity=0.251 Sum_probs=403.0
Q ss_pred cCCCcEEEEEEccCCC--CCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccC-----cCCcEEEEEEEeC
Q psy17146 146 TEDREIELECISANGK--PPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE-----HHNTTFTCQAQNT 218 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~--P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-----~d~G~Y~C~a~n~ 218 (1011)
.+|..+.|.|.. ... +.+.|+|.||+..+............++ .|-|.++.. -|+|.|+|.|.-.
T Consensus 52 ~~~~svlLecs~-~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNg-------Sl~i~~v~~~kh~~~~eg~Yqc~atv~ 123 (1381)
T KOG4221|consen 52 MEGSSVLLECSA-YAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNG-------SLYISSVLASKHNKVDEGVYQCLATVE 123 (1381)
T ss_pred ccccceEEeccc-cccCCCCeeEEEccCchhhhhhhhhHHhhccCC-------ceeEeeecccccccccCceEEEEEEcc
Confidence 679999999973 222 4789999999887755322222233343 566666554 8899999999977
Q ss_pred CCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCC
Q psy17146 219 ADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHD 298 (1011)
Q Consensus 219 ~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~ 298 (1011)
.-..-.+....|.+...+.+....
T Consensus 124 ~~gsi~Sr~a~v~~a~~~~f~~~~-------------------------------------------------------- 147 (1381)
T KOG4221|consen 124 DVGSILSRTAKVALAGLADFALQP-------------------------------------------------------- 147 (1381)
T ss_pred ccceeecceEEEEecccCccccCc--------------------------------------------------------
Confidence 433334555566555555443221
Q ss_pred cEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCc-----CccEEEEeecccccCCcEEEEEEE
Q psy17146 299 SIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA-----SATELYLTNITRHQHDSIVKCEVH 373 (1011)
Q Consensus 299 ~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~-----~~~~L~I~~~~~~~d~G~Y~C~a~ 373 (1011)
.+..+..|+++.|.|.+.+.+.+ .+.|.||+.++.... ..+.|.|.+++.. |.|.|+|.|+
T Consensus 148 ------------~~~t~~~g~ta~f~c~vn~e~~p-~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~-d~g~yrc~vt 213 (1381)
T KOG4221|consen 148 ------------ESTTLLYGQTALFSCEVNAEPVP-TIMWLKNDQPLPLDSRVIVLPSGALEISGLQPS-DTGEYRCVVT 213 (1381)
T ss_pred ------------cceeEecCCcEEEEEEEcCccCc-eeEEecccccccCCCcEEEcCCCcEEecccccC-CCceEEEEEe
Confidence 23456677777777777776665 788888888766643 3578999999998 9999999999
Q ss_pred cCCcc-ceeeEEEEEEecc------eEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee-------eccCCcE
Q psy17146 374 NDVGK-SEDSETLDVTYGP------RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNL 439 (1011)
Q Consensus 374 n~~g~-~~~s~~l~V~~~P------~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L 439 (1011)
+..-. .+..+.|+|...| .|...|....+.+|+++.|+|.+.|.|.|.|.|.|++..+. ....++|
T Consensus 214 ~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~sl 293 (1381)
T KOG4221|consen 214 GGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSL 293 (1381)
T ss_pred cCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccce
Confidence 86543 3677888887433 46778999999999999999999999999999999886543 3346789
Q ss_pred EEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeecc
Q psy17146 440 TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG 519 (1011)
Q Consensus 440 ~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~ 519 (1011)
.|.+++.+|+|+|+|.|.|.
T Consensus 294 liS~a~~~dSg~YtC~Atn~------------------------------------------------------------ 313 (1381)
T KOG4221|consen 294 LISNATDDDSGKYTCRATNT------------------------------------------------------------ 313 (1381)
T ss_pred EEeccccccCceEEEEecCC------------------------------------------------------------
Confidence 99999999999999999852
Q ss_pred CCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee------cCCCcE
Q psy17146 520 SSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV------GNSPNL 593 (1011)
Q Consensus 520 ~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~------~~~~~L 593 (1011)
....++.+.|.|..+|.|...|.+..+.++.++.|.|.+.|.|.|.+.|+|+|..+.. ..++.|
T Consensus 314 ----------~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~l 383 (1381)
T KOG4221|consen 314 ----------NDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNL 383 (1381)
T ss_pred ----------CcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCc
Confidence 2234567788899999999999999999999999999999999999999999976543 334569
Q ss_pred EEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee-------cCCceeeecCCcEEEEEEEE-----ecCCCCeE
Q psy17146 594 TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII-------SHRTQFGIPGDTARVECSAF-----SIPPPEKV 661 (1011)
Q Consensus 594 ~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~-------~~~~~~v~~G~~v~L~C~~~-----g~p~p~~v 661 (1011)
+|..+-..|.|.|+|.++| +.|.+.+.+.|.|...|.+. .+.+..+..-+..-+.|... +.+.+ .+
T Consensus 384 rIlgi~~sdeg~yQcvaen-~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~-~~ 461 (1381)
T KOG4221|consen 384 RILGIVKSDEGFYQCVAEN-DAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNIS-TY 461 (1381)
T ss_pred EEEEEecccchhhhhhhcc-CcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcc-eE
Confidence 9999999999999999999 67888888888664444332 12333333333434444432 33445 78
Q ss_pred EEEEC-CeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeeh
Q psy17146 662 TWSYR-GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIG 740 (1011)
Q Consensus 662 ~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~ 740 (1011)
+|++. +..+. .+..... ..| -.+++.++.......+.|.|.|..|+...+..|.|..
T Consensus 462 ~v~~~~~~~~r----er~~~ts---s~g--~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t------------- 519 (1381)
T KOG4221|consen 462 TVFYKVEGDVR----ERLQNTS---SPG--IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTT------------- 519 (1381)
T ss_pred EEEEecCCchh----hhheecc---CCc--eEEEeeecccceeEEEEEeccCcccCCccCCceEEec-------------
Confidence 88863 32222 1111111 012 5677888888877788888999999999988888852
Q ss_pred HHHHHHHhhhheeeeeeccCCCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc-----------------
Q psy17146 741 CVVILVALTMVVILCQRKVKKPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS----------------- 802 (1011)
Q Consensus 741 ~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~----------------- 802 (1011)
.+.+|..++....+..++.+.| ++.-++++|++|++.|.....
T Consensus 520 -------------------~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n~~e~ti~g 580 (1381)
T KOG4221|consen 520 -------------------QPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVENNATEYTING 580 (1381)
T ss_pred -------------------CCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEecCccEEEeec
Confidence 2223434888888899999999 777799999999999998733
Q ss_pred -cccccccc---c---CCCCCCC-cccccccccccccccccCCcccccccccCcCCC--CCCCCCCCCCCCccEEEEEee
Q psy17146 803 -VSNVHLDY---A---GHDSETG-SESVHTRIGVPLAGPVPMDQRYHRYSSADFADA--VFPSLKPDGHNNNGFVFSDFI 872 (1011)
Q Consensus 803 -~p~~~Y~f---A---~G~g~~s-s~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i--~W~p~~~~~~ng~~~gY~v~~ 872 (1011)
.|+++|.| | .|.|..| ...++|.+++|++||.|+.... .++++| +|.||+++.+||.+.||+|.|
T Consensus 581 L~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev-----~sStsVrVsW~pP~~~t~ng~itgYkIRy 655 (1381)
T KOG4221|consen 581 LEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEV-----VSSTSVRVSWLPPPSETQNGQITGYKIRY 655 (1381)
T ss_pred CCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEe-----cCCCeEEEEccCCCcccccceEEEEEEEe
Confidence 89999999 5 8999888 6779999999999999999887 223333 999999999999999999999
Q ss_pred eccCCC
Q psy17146 873 RDYNQT 878 (1011)
Q Consensus 873 r~~~~~ 878 (1011)
|.....
T Consensus 656 ~~~~~~ 661 (1381)
T KOG4221|consen 656 RKLSRE 661 (1381)
T ss_pred cccCcc
Confidence 955443
No 6
>KOG4222|consensus
Probab=100.00 E-value=1e-40 Score=377.92 Aligned_cols=535 Identities=21% Similarity=0.317 Sum_probs=379.4
Q ss_pred HhcccceeeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEe-
Q psy17146 18 SMGSLAQYREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIY- 95 (1011)
Q Consensus 18 ~~~~~~~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~- 95 (1011)
+.+.-...++|++..+|.++.+.-|+.++|.|.+.+ +.++++|+|+|.... .......|+.+- +...+-|++.
T Consensus 22 ~~~~r~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~--~~e~~shR~~lp---~gsLf~l~~ah 96 (1281)
T KOG4222|consen 22 CPSLRAQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVF--KGEPGSHRFLLP---DGSLFLLRLAH 96 (1281)
T ss_pred ccccccccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccC--CCCCCCcceecC---CccEEEEeccc
Confidence 344556677999999999999999999999999999 488999999996332 222233344331 1122222222
Q ss_pred --ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCc
Q psy17146 96 --PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTG 173 (1011)
Q Consensus 96 --~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~ 173 (1011)
+.. .|.|.|.|+++|..+ .-.|..+.|.|....+...+.... +.+..|+.+.|+|.-..|.|.+.+.|.|++.
T Consensus 97 g~~a~-~d~G~y~cvasn~~g---~avSr~a~L~vavlrddfrv~prd-~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~ 171 (1281)
T KOG4222|consen 97 GKKAG-HDHGVYSCVASNRLG---EAVSRGASLIVAVLRDDFRVSPRD-VQAAVGEEAVLECGPPRGHPEPTVSWVKDGK 171 (1281)
T ss_pred CCccc-CCCceeEeeecCccc---eeeecCceEEEEEechhcccCccc-ccccccceeEEeccCCCCCCCCcceeecCCC
Confidence 122 399999999998643 235677888888777776666554 6777899999999778899999999999999
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCce
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTD 253 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~ 253 (1011)
.+... ....+....++.|.|.+++..|+|+|.|++.|..|.. .+...+|.|.+.|.+... +
T Consensus 172 pl~~~-------~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~R-eS~~A~lsv~e~P~f~~r-p---------- 232 (1281)
T KOG4222|consen 172 PLDHY-------DVPIIALISGGNLLISNVRKSDEGTYACVATNMVGER-ESIPARLSVQEKPWFWKR-P---------- 232 (1281)
T ss_pred ccccc-------cceeEEEecCCcEEEeccccCCCceeeeeeccccccc-ccccceeeeccCCccccc-c----------
Confidence 88621 1122334455689999999999999999999999976 355566777777765432 2
Q ss_pred EEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCc
Q psy17146 254 VRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSH 333 (1011)
Q Consensus 254 v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~ 333 (1011)
.+..+.+|..+.+.|.+.|.|.|
T Consensus 233 ---------------------------------------------------------~~~~v~~g~~~~f~c~v~GdP~P 255 (1281)
T KOG4222|consen 233 ---------------------------------------------------------KDLAVLVGAAAEFDCRVGGDPQP 255 (1281)
T ss_pred ---------------------------------------------------------ccceeecccccccccccCCCCCC
Confidence 23445566667777777777766
Q ss_pred cEEEEEECCeecCCC-----cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcE
Q psy17146 334 MKYRWYINDQPVPAA-----ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGV 408 (1011)
Q Consensus 334 ~~i~W~k~g~~l~~~-----~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v 408 (1011)
+++|.|++..++.. .+..+|.|.+++.. |.|.|.|.++|..|..+.++.++|..+|.|...|.+..+..|..+
T Consensus 256 -~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~-deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~v 333 (1281)
T KOG4222|consen 256 -TVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPT-DEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTV 333 (1281)
T ss_pred -ceeeeccCCCCCccceeeeeccccccccccCCC-cccceeeeccccccccccccceEEecCcccccccCccccccCceE
Confidence 78888877666554 34478899999987 999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCceEEEeCCCcee--------------eccCCcEEEEeeccCCCeEEEEEEEEcCCccee-eEEEEEEc
Q psy17146 409 NLLCDVDGNPAPEITWIHEDSDKV--------------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVG-AEATVYLK 473 (1011)
Q Consensus 409 ~l~C~~~g~p~p~v~W~k~~~~~~--------------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s-~~~~v~v~ 473 (1011)
+|.|.+.|+|.|.+.|.|.+.... +...+.|+|.++...|.|.|.|...+..+.... +.+.+.-
T Consensus 334 t~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~- 412 (1281)
T KOG4222|consen 334 TFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTD- 412 (1281)
T ss_pred EeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEe-
Confidence 999999999999999999875322 334568999999999999999997653222211 1111100
Q ss_pred CCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEE-EecceeecCCc
Q psy17146 474 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDV-TYGPRFRARPY 552 (1011)
Q Consensus 474 ~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V-~~~P~~~~~p~ 552 (1011)
.+.- .-+|.+...+.
T Consensus 413 ----------------------------------------------------------------~~~~~rPpp~i~~g~~ 428 (1281)
T KOG4222|consen 413 ----------------------------------------------------------------VLTDSRPPPIIEQGPA 428 (1281)
T ss_pred ----------------------------------------------------------------eeccCCCCceeeeccc
Confidence 0000 12356667788
Q ss_pred eEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEE
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVY 625 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~ 625 (1011)
++.+.++..+.|.|.+.+.|.+.+.|++++-.+. ....++|+|.++...|.|.|+|.|.+ ..++.+.++.|.
T Consensus 429 nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~-~~ges~wSatl~ 507 (1281)
T KOG4222|consen 429 NQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASD-ESGESTWSATLT 507 (1281)
T ss_pred ccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccC-cccccccceeeE
Confidence 8899999999999999999999999999985543 33347999999999999999999998 567777788888
Q ss_pred EcCCCe---ee---cCCce---------eeecCCcEEEEEEEEec--CCCC---eEEEEECCeEecccCCCCeEEecCCc
Q psy17146 626 LKGRPT---II---SHRTQ---------FGIPGDTARVECSAFSI--PPPE---KVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 626 V~~~P~---i~---~~~~~---------~v~~G~~v~L~C~~~g~--p~p~---~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
|.+.-. +. .+... .-..+..++|....... --|+ .+..|-. .+. ...+.+-.
T Consensus 508 v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~--~~~---etw~~ta~--- 579 (1281)
T KOG4222|consen 508 VEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSP--DLG---ETWQTTAG--- 579 (1281)
T ss_pred hhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhhh--hhc---cccccccc---
Confidence 754311 11 01111 11123334443332111 0010 0110000 000 00000000
Q ss_pred CccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 686 ~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
.-...+..|+.+.+..+..+.|.|.|..|
T Consensus 580 -~v~~t~~~I~gL~P~~sylf~vRa~n~~G 608 (1281)
T KOG4222|consen 580 -RVKTTTYAIRGLKPNLSYLFLVRAENEQG 608 (1281)
T ss_pred -ccccceeeecCcCccceeeeeeecccccc
Confidence 11246889999999999999999999999
No 7
>KOG4194|consensus
Probab=99.96 E-value=1.8e-28 Score=261.00 Aligned_cols=287 Identities=21% Similarity=0.358 Sum_probs=228.4
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCC--CCCCceEEEeCCCcee----------------------eccCCcEEEEeec
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDG--NPAPEITWIHEDSDKV----------------------VGNSPNLTLLMTS 445 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g--~p~p~v~W~k~~~~~~----------------------~~~~~~L~I~~v~ 445 (1011)
.|++...|.++....|+.++|+|.+.+ ..+.++.|.+++.-.. ....+.|.+.+|.
T Consensus 503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt 582 (873)
T KOG4194|consen 503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT 582 (873)
T ss_pred CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence 577888899999999999999999965 4556999999874211 1113458999999
Q ss_pred cCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceE
Q psy17146 446 DDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS 525 (1011)
Q Consensus 446 ~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~ 525 (1011)
-.|+|.|+|++.|.-+...+.
T Consensus 583 ~td~grYQCVvtN~FGStysq----------------------------------------------------------- 603 (873)
T KOG4194|consen 583 FTDEGRYQCVVTNHFGSTYSQ----------------------------------------------------------- 603 (873)
T ss_pred cccCceEEEEEecccCcchhh-----------------------------------------------------------
Confidence 999999999999765444433
Q ss_pred EEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc----------eeecCCCcEEE
Q psy17146 526 VHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----------KVVGNSPNLTL 595 (1011)
Q Consensus 526 ~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~----------~~~~~~~~L~I 595 (1011)
.+.|.|...|.|...|.+.++..|+.+.|.|.++|.|.|.|.|.|+|.. .+..++..+-|
T Consensus 604 ----------k~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~I 673 (873)
T KOG4194|consen 604 ----------KAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFI 673 (873)
T ss_pred ----------eeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEE
Confidence 3455677889999999999999999999999999999999999999854 23455678999
Q ss_pred eecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecC-CceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEeccc
Q psy17146 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVG 673 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~-~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~ 673 (1011)
.+++.+|+|.|+|.|.| ..|+.++.++|.|.+.|.+..| .+..|..|+++.|.|.+.|.|. | ...|+|++++|...
T Consensus 674 tnvk~eD~GiYtC~A~n-~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~p-r~~W~k~d~pil~t 751 (873)
T KOG4194|consen 674 TNVKIEDQGIYTCTAQN-VAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADP-RLEWFKEDKPILIT 751 (873)
T ss_pred ecccccccceeEEeeec-cccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCc-cccccCCCCceEEe
Confidence 99999999999999999 6899999999999999988855 6788999999999999999998 8 99999999998753
Q ss_pred CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC----------CCeEEEEEeeehHHH
Q psy17146 674 SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS----------FPLLLILTGVIGCVV 743 (1011)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~----------~~~~~~~~~~~~~~~ 743 (1011)
. +.... .....|.+.+...+|+|.|+|...|..|.....+.+.+... ....+.+++++++++
T Consensus 752 ~--rh~f~------d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~~~Se~~~Tq~~~riia~vs~~v 823 (873)
T KOG4194|consen 752 E--RHTFP------DGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKCRMSEDGSTQVGIRIIAVVSCSV 823 (873)
T ss_pred e--cccCC------CCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCcccccCCccEEEEEEEEEEeeee
Confidence 2 22221 22468999999999999999999999998877776665322 223455555666555
Q ss_pred HHHHhhhheeee
Q psy17146 744 ILVALTMVVILC 755 (1011)
Q Consensus 744 ~~~~l~~~~~~~ 755 (1011)
.-.....+.++.
T Consensus 824 d~~~~~~~~Iy~ 835 (873)
T KOG4194|consen 824 DTANHRRLTIYS 835 (873)
T ss_pred ccceeeeEEEEe
Confidence 554444444433
No 8
>KOG3515|consensus
Probab=99.96 E-value=1.8e-27 Score=268.70 Aligned_cols=642 Identities=17% Similarity=0.198 Sum_probs=415.8
Q ss_pred ecCCceeEEecCcEEEEEEEcCC--CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEE
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQV 109 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 109 (1011)
..+-+.-+..|++|.|+|++.+. ...+.|++.+..+. +|+..+.+. +|.......+.-+.|.|++
T Consensus 12 ~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--------~~~~~~~~~-----~~~~~~~~~~~~~~~~c~a 78 (741)
T KOG3515|consen 12 SSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--------GRYATIADP-----TLVTTGDVRDTVAELNCRA 78 (741)
T ss_pred CCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc--------cccccccCC-----ceeeecchhhhhhhhhhhh
Confidence 33444588999999999999974 44899999987653 455444332 6777777777789999999
Q ss_pred EeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEE-EccCCCCCcEEEEEeCCceeeece--eEEEeee
Q psy17146 110 STGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELEC-ISANGKPPAEITWIDGTGTVMSNV--RVTEEAS 186 (1011)
Q Consensus 110 ~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C-~~~~g~P~~~i~W~k~~~~l~~~~--~~~~~~~ 186 (1011)
.|... ........+.|..++..... .......++..+.+.| ....+.|.+.++|..++....... .......
T Consensus 79 ~ns~~---~~~~~~~~l~v~~~pa~~~~--~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~ 153 (741)
T KOG3515|consen 79 FNSVG---MPSRCPMILDVDYPPACLPE--LGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAG 153 (741)
T ss_pred ccccc---CceecceeeccccCcccccc--ccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCccccccc
Confidence 88632 33455667777776653222 2233456788899999 557788999999999876654422 1211111
Q ss_pred cCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc-eeEEEEEEEEEeCCc-eEEEecCc-ceeecCceEEEEEEcccC
Q psy17146 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT-YKVARLKLLVKYAPK-VQVSVIGS-NRLVEGTDVRLYCKAEAN 263 (1011)
Q Consensus 187 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~-~~s~~v~v~v~~~P~-~~~~~~~~-~~v~~g~~v~L~C~~~~~ 263 (1011)
.-+......+.|++...+.++.|.|+|.|.+..... ..-..+.+.+..... +.+..... ..+.+|+.+.|.|.+.+.
T Consensus 154 a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg 233 (741)
T KOG3515|consen 154 ALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGG 233 (741)
T ss_pred ccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcC
Confidence 222222445678999999999999999999842222 112223333333222 22222222 467899999999999999
Q ss_pred CCccEEEEEeCCcccCCcc-----c----cceEEEEeeecccCCcEEEEEEEE--------Ee----------eCCcccc
Q psy17146 264 PSHMKYRWYINDQPVPAAA-----S----ATELYLTNITRHQHDSIVKCEVQV--------SV----------IGSNRLV 316 (1011)
Q Consensus 264 ~~~~~i~W~~~~~~l~~~~-----~----~~~l~i~~~~~~~~~~~~~c~~~~--------~~----------~~~~~v~ 316 (1011)
.+...++|+++..++...+ . ..........+.+.....+|.+.. .+ .....+.
T Consensus 234 ~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls 313 (741)
T KOG3515|consen 234 NPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLS 313 (741)
T ss_pred CcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccc
Confidence 9999999999988776641 0 111222333445555567777653 11 1234478
Q ss_pred cCCcEEEEEEeecCCCccEEEEEECCeecCCCc------------CccEEEEeecccccCCcEEEEEEEcCCccc--eee
Q psy17146 317 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------------SATELYLTNITRHQHDSIVKCEVHNDVGKS--EDS 382 (1011)
Q Consensus 317 ~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~------------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~--~~s 382 (1011)
.|....+.|...+..++..+.|+|+........ ....+......+ .|.|.|+|.+.|..... +..
T Consensus 314 ~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~-~~~g~v~c~a~~~~~~~~sss~ 392 (741)
T KOG3515|consen 314 SGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQ-QDGGQVTCPADNLELAHSSSSS 392 (741)
T ss_pred cccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccch-hcCceEEccccccccccccccc
Confidence 899999999888776667999999665543321 012233344444 49999999998877544 355
Q ss_pred EEEEEEecceEee-CCCceEecCCCcEEEEeecCCCC-CCceEEEeCCCcee---------eccCCcEEEEeeccCCCeE
Q psy17146 383 ETLDVTYGPRFRA-RPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGR 451 (1011)
Q Consensus 383 ~~l~V~~~P~~~~-~p~~~~v~~G~~v~l~C~~~g~p-~p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~ 451 (1011)
..|.+..+|.+.. ....+...+++.....-.+.++| .+.+.|.+++.+.. ........+.++...|.|.
T Consensus 393 ~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~ 472 (741)
T KOG3515|consen 393 FLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGS 472 (741)
T ss_pred eeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCc
Confidence 6677777777654 34444555666655554444555 46899998864332 3334445577899999999
Q ss_pred EEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCC
Q psy17146 452 YYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVG 531 (1011)
Q Consensus 452 Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G 531 (1011)
|.|.+.|..++
T Consensus 473 y~~tatns~gg--------------------------------------------------------------------- 483 (741)
T KOG3515|consen 473 YGLTATNSPGG--------------------------------------------------------------------- 483 (741)
T ss_pred ceeeeccCCCc---------------------------------------------------------------------
Confidence 99999974332
Q ss_pred CCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCC--eEEEEecCCce-----------eecCCCcEEEeec
Q psy17146 532 KSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDK-----------VVGNSPNLTLLMT 598 (1011)
Q Consensus 532 ~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p--~v~W~k~~~~~-----------~~~~~~~L~I~~v 598 (1011)
......+.+...|.+...-..+....|+++.+.|.....+.- .+.|.+.+... .....+.+++...
T Consensus 484 -~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~ 562 (741)
T KOG3515|consen 484 -AQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGN 562 (741)
T ss_pred -eeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCcccccccccccccCCccceeeccc
Confidence 222222334444444444445556677889999998777654 68899987543 1233467888887
Q ss_pred CCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecCC-c-eeeecC-CcEEEEEEEEecCCCCeEEEEECCeEecccCC
Q psy17146 599 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHR-T-QFGIPG-DTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 675 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~-~-~~v~~G-~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~ 675 (1011)
....++.|.|.+.+ ..........|.+..++...... . ....+| ..++.+|.+.|.|.+ .++|-|+...... ..
T Consensus 563 ~~~~~~~~~~~~d~-~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~~g~v~as~~~~a~~~~~~-~~~~~k~p~~~~~-~~ 639 (741)
T KOG3515|consen 563 SSLQASETACVVDG-SSPPAGLSLVLKAYSALIVTVRTPNMYTAQEGCVNASDDCVASGVPST-SFTTAKTPLQTTE-GP 639 (741)
T ss_pred ccccccceEEeecC-CCCccccceEEEecccccccccCCceeeeccCcccccccceecccccc-eeecccCCCcccC-Cc
Confidence 77888999999998 44455556667776666655332 1 112222 278999999999999 8999999877432 22
Q ss_pred CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeee
Q psy17146 676 DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILC 755 (1011)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 755 (1011)
..+.+.......+..++..+..+...|.+ ..|.+.|.+|++..++.+.-
T Consensus 640 ~~~~~~~~~~~~~s~~~~~~~~~~~~~y~-~~c~t~n~lg~~~v~~~~~~------------------------------ 688 (741)
T KOG3515|consen 640 HIREKATQQGQTHSSSEWILNHIDGSDYE-NGCTTQNLLGSDHVSGAIHS------------------------------ 688 (741)
T ss_pred eEEEeeeeccccccccccccCCcchhhhc-ceeeecccCCCccccceecC------------------------------
Confidence 22222222222233345555555555555 99999999999987776643
Q ss_pred eeccCCCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeec
Q psy17146 756 QRKVKKPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRT 799 (1011)
Q Consensus 756 ~~~~~~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~ 799 (1011)
-..+-.|.++....++..++.+.| |..|++.+ +.|.++|..
T Consensus 689 --~t~~~~~~n~~~~~~~~~~i~l~~~p~fdgg~~-q~f~~~~~~ 730 (741)
T KOG3515|consen 689 --GTASVGPINLTYDNLTYSTISLEWMPGFDGGLQ-QRFFLKYYD 730 (741)
T ss_pred --CcCCCCccceEeeeeeeeeeceeeeeccccccc-cceeeehhh
Confidence 123338889999999999999999 88887754 455555544
No 9
>KOG4194|consensus
Probab=99.96 E-value=1.4e-27 Score=254.24 Aligned_cols=250 Identities=23% Similarity=0.399 Sum_probs=214.1
Q ss_pred CcccccCCcEEEEEEeecCC-CccEEEEEECCeecCCC---------------------cCccEEEEeecccccCCcEEE
Q psy17146 312 SNRLVEGTDVRLYCKAEANP-SHMKYRWYINDQPVPAA---------------------ASATELYLTNITRHQHDSIVK 369 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~~~~~p-~~~~i~W~k~g~~l~~~---------------------~~~~~L~I~~~~~~~d~G~Y~ 369 (1011)
......|+.++|+|.+.+.. .|+++.|.|+++....- .....|.+.|++.. |+|.|+
T Consensus 512 ~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~t-d~grYQ 590 (873)
T KOG4194|consen 512 TVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFT-DEGRYQ 590 (873)
T ss_pred HhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecc-cCceEE
Confidence 34567899999999999853 67899999988743321 12367899999998 999999
Q ss_pred EEEEcCCccc-eeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCc----------eeeccCCc
Q psy17146 370 CEVHNDVGKS-EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----------KVVGNSPN 438 (1011)
Q Consensus 370 C~a~n~~g~~-~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~----------~~~~~~~~ 438 (1011)
|+++|.+|+. +..++|.|...|.|...|.+.++..|+.++|.|.+.|.|.|+|.|.|+|.. .+......
T Consensus 591 CVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~ 670 (873)
T KOG4194|consen 591 CVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDV 670 (873)
T ss_pred EEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCE
Confidence 9999999987 688999999999999999999999999999999999999999999999854 12455677
Q ss_pred EEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeec
Q psy17146 439 LTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV 518 (1011)
Q Consensus 439 L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~ 518 (1011)
+.|.+++.+|.|.|+|.|.
T Consensus 671 f~Itnvk~eD~GiYtC~A~------------------------------------------------------------- 689 (873)
T KOG4194|consen 671 FFITNVKIEDQGIYTCTAQ------------------------------------------------------------- 689 (873)
T ss_pred EEEecccccccceeEEeee-------------------------------------------------------------
Confidence 9999999999999999998
Q ss_pred cCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCC-CeEEEEecCCceeec-------CC
Q psy17146 519 GSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPA-PEITWIHEDSDKVVG-------NS 590 (1011)
Q Consensus 519 ~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~-p~v~W~k~~~~~~~~-------~~ 590 (1011)
|.+|..+..+.|.|...|.|..+.+++.+..|+++.|.|.+++.|. |.+.|+|+++.+... ++
T Consensus 690 ---------n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~d 760 (873)
T KOG4194|consen 690 ---------NVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGD 760 (873)
T ss_pred ---------ccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCC
Confidence 5677788888999999999999999999999999999999999988 999999999876543 35
Q ss_pred CcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee
Q psy17146 591 PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII 633 (1011)
Q Consensus 591 ~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~ 633 (1011)
.-|.+.+...+|+|.|+|...| ..+.......+.+...+...
T Consensus 761 Qllvv~~~~~~daG~yTcem~~-~~~~~~~~i~l~~~~~~~~~ 802 (873)
T KOG4194|consen 761 QLLVVKENLVEDAGIYTCEMSN-TLGTERIHICLLVYQKKKCR 802 (873)
T ss_pred eEEEEEehhhhhcceEEEEEEe-eccceeeEEEEEEeecCCcc
Confidence 6789999999999999999999 56666666666665555444
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.95 E-value=1.2e-25 Score=244.37 Aligned_cols=250 Identities=16% Similarity=0.233 Sum_probs=177.4
Q ss_pred eEecCCCcEEEEeec-----CCCCCCceEEEeCCCc---ee-eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEE
Q psy17146 400 VQVDRGAGVNLLCDV-----DGNPAPEITWIHEDSD---KV-VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 470 (1011)
Q Consensus 400 ~~v~~G~~v~l~C~~-----~g~p~p~v~W~k~~~~---~~-~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v 470 (1011)
..+.+|+.+.|.|.+ .|+|.++++|+|++.. .. ...+..|.|.++..+|+|.|+|.|.|..+. .+..+.|
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~-~~~s~~L 114 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYC-DMMSLNL 114 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcc-eEEEEEE
Confidence 356679999999997 7899999999999753 22 223445889999999999999999975422 2233333
Q ss_pred EEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecC
Q psy17146 471 YLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRAR 550 (1011)
Q Consensus 471 ~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~ 550 (1011)
.|... .+|.+...
T Consensus 115 ~V~~~-------------------------------------------------------------------~~~~~~~~ 127 (326)
T PHA02785 115 TIVSV-------------------------------------------------------------------SESNIDLI 127 (326)
T ss_pred EEEec-------------------------------------------------------------------CCCcccee
Confidence 33211 11112222
Q ss_pred CceEEEcCCCcEEEEEE-----EecCCCCeEEEEecCC----ceeecCCCcEEEeecCCCCCEEEEEEEEecCCCce---
Q psy17146 551 PYSVQVDRGAGVNLLCD-----VDGNPAPEITWIHEDS----DKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV--- 618 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~-----~~g~p~p~v~W~k~~~----~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~--- 618 (1011)
+....+.+|+.+.|.|. ..+.|.+.++|++++. +.....++.|.|.+++.+|+|.|+|.|.|. .+..
T Consensus 128 ~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~-~g~~~~~ 206 (326)
T PHA02785 128 SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYI-YGDKTYN 206 (326)
T ss_pred eccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEEEEec-cCCEEEe
Confidence 23445779999999997 3567889999998652 222334578999999999999999999993 3332
Q ss_pred -eeEEEEEEc---CCCeeecCCceeeecCCcEEEEEEEEecCCC--CeEEEEECCeEecccC---CCCeEEecCCcC-c-
Q psy17146 619 -GAEATVYLK---GRPTIISHRTQFGIPGDTARVECSAFSIPPP--EKVTWSYRGEEIGVGS---SDDYSVLEDPLK-E- 687 (1011)
Q Consensus 619 -s~~~~l~V~---~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p--~~v~W~~~g~~l~~~~---~~~~~~~~~~~~-~- 687 (1011)
+..+.|.|. .||.+..+....+..|+.++|.|.+.|.|.+ ..+.|++||..+...+ ..++........ +
T Consensus 207 ~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~ 286 (326)
T PHA02785 207 VTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDK 286 (326)
T ss_pred EEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCcccccc
Confidence 344566664 4666766777778889999999999998874 2799999999886422 123333321111 1
Q ss_pred --cceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 688 --GIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 688 --~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
...+.|+|.+++.+|.|.|+|.|.|..|...
T Consensus 287 ~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 287 RRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred ceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 1246899999999999999999999986443
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.93 E-value=2.5e-24 Score=234.04 Aligned_cols=234 Identities=16% Similarity=0.220 Sum_probs=171.4
Q ss_pred CCcccccCCcEEEEEEe-----ecCCCccEEEEEECCeecC---CCcCccEEEEeecccccCCcEEEEEEEcCCccceee
Q psy17146 311 GSNRLVEGTDVRLYCKA-----EANPSHMKYRWYINDQPVP---AAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDS 382 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~-----~~~p~~~~i~W~k~g~~l~---~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s 382 (1011)
....+.+|+.+.|.|.+ .+.|.+ ++.|+|+|.... ....+..|.|.++..+ |+|.|+|.|.|..|..+.+
T Consensus 34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~-~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~-DsG~Y~C~a~N~~g~~~~s 111 (326)
T PHA02785 34 ASFMELENEPVILPCPQINTLSSGYNIL-DILWEKRGADNDRIIPIDNGSNMLILNPTQS-DSGIYICITKNETYCDMMS 111 (326)
T ss_pred chhhhhcCCCEEEECCCccccccCCCCc-eEEEEECCCccceEEEccCCceEEEcccCcc-cCeEEEEEEECCCcceEEE
Confidence 34567789999999997 577765 999999975321 1134556889999887 9999999999999988888
Q ss_pred EEEEEEec--ceEeeCCCceEecCCCcEEEEee-----cCCCCCCceEEEeCCC----ceeeccCCcEEEEeeccCCCeE
Q psy17146 383 ETLDVTYG--PRFRARPYSVQVDRGAGVNLLCD-----VDGNPAPEITWIHEDS----DKVVGNSPNLTLLMTSDDLAGR 451 (1011)
Q Consensus 383 ~~l~V~~~--P~~~~~p~~~~v~~G~~v~l~C~-----~~g~p~p~v~W~k~~~----~~~~~~~~~L~I~~v~~~d~G~ 451 (1011)
+.|.|... |.+...+....+.+|+.+.|.|. ..+.|.+.++|+++.. ......++.|.|.+++.+|+|.
T Consensus 112 ~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~ 191 (326)
T PHA02785 112 LNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGY 191 (326)
T ss_pred EEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeE
Confidence 88888653 33433445556889999999997 2467899999998652 1122335689999999999999
Q ss_pred EEEEEEEcCCcce---eeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEc
Q psy17146 452 YYCKASVMGFPEV---GAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHN 528 (1011)
Q Consensus 452 Y~C~a~n~~~~~~---s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n 528 (1011)
|+|.|.|..+... ...+.+.|..+
T Consensus 192 Y~C~~~n~~g~~~~~~t~~v~l~V~~~----------------------------------------------------- 218 (326)
T PHA02785 192 YTCVLKYIYGDKTYNVTRIVKLEVRDR----------------------------------------------------- 218 (326)
T ss_pred EEEEEEeccCCEEEeEEEEEEEEEecc-----------------------------------------------------
Confidence 9999998544322 11222222110
Q ss_pred CCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCC---eEEEEecCCceee-----------c------
Q psy17146 529 DVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP---EITWIHEDSDKVV-----------G------ 588 (1011)
Q Consensus 529 ~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p---~v~W~k~~~~~~~-----------~------ 588 (1011)
..+|. ...|....+..|+.++|.|.+.|.|.+ .+.|+|||..+.. .
T Consensus 219 -------------~~pp~-~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~ 284 (326)
T PHA02785 219 -------------IIPPT-MQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTT 284 (326)
T ss_pred -------------CCCce-ecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCcccc
Confidence 01233 234567778889999999999998874 8999998753211 0
Q ss_pred -----CCCcEEEeecCCCCCEEEEEEEEec
Q psy17146 589 -----NSPNLTLLMTSDDLAGRYYCKASVM 613 (1011)
Q Consensus 589 -----~~~~L~I~~v~~~d~G~Y~C~a~n~ 613 (1011)
..+.|+|.+++.+|+|.|+|.|.|.
T Consensus 285 ~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~ 314 (326)
T PHA02785 285 DKRRVITSRLNINPVKEEDATTFTCMAFTI 314 (326)
T ss_pred ccceeeeEEEEECCcchhcCeeeEEEEEec
Confidence 1247999999999999999999994
No 12
>KOG3515|consensus
Probab=99.87 E-value=3.6e-20 Score=209.97 Aligned_cols=494 Identities=18% Similarity=0.204 Sum_probs=314.1
Q ss_pred eecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCce
Q psy17146 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~ 223 (1011)
-+.+|+.|.|.|.+..+.|.+.++|++.+..+. .+ +......+|......++.-+.|.|++.|..+..
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~- 85 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GR---------YATIADPTLVTTGDVRDTVAELNCRAFNSVGMP- 85 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccc--cc---------cccccCCceeeecchhhhhhhhhhhhcccccCc-
Confidence 678999999999977777788999999776554 11 122233578888888999999999999996655
Q ss_pred eEEEEEEEEEeCCceEEEecCcceeecCceEEEEE-EcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEE
Q psy17146 224 KVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYC-KAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVK 302 (1011)
Q Consensus 224 ~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C-~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~ 302 (1011)
....+.+.+.++|... ..........+..+.+.| ...+..+...+.|+.++......
T Consensus 86 ~~~~~~l~v~~~pa~~-~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~--------------------- 143 (741)
T KOG3515|consen 86 SRCPMILDVDYPPACL-PELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNA--------------------- 143 (741)
T ss_pred eecceeeccccCcccc-ccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecc---------------------
Confidence 4556667777766532 222333445667777777 44455566777787765422111
Q ss_pred EEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC-cCccEEEEeecccccCCcEEEEEEEcC---Ccc
Q psy17146 303 CEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-ASATELYLTNITRHQHDSIVKCEVHND---VGK 378 (1011)
Q Consensus 303 c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~-~~~~~L~I~~~~~~~d~G~Y~C~a~n~---~g~ 378 (1011)
.+....+-|- .+... .....+.+..... .+.|.|+|.|.|. .+.
T Consensus 144 ---------------------------~~~~~~~~~~----a~gss~t~~s~l~~~v~Rk-a~~g~~tC~A~nr~s~~l~ 191 (741)
T KOG3515|consen 144 ---------------------------VNQRGRVGAG----ALGSSYTEPSLLKQTVSRK-ADNGNYTCPANNRNSPGLS 191 (741)
T ss_pred ---------------------------cCCccccccc----ccCceeccccceeeEEEEe-cCCceeEcccccccCcccc
Confidence 1100011110 00000 1233455555544 4999999999884 333
Q ss_pred ceeeEEEEEEecce-E-eeC-CCceEecCCCcEEEEeec-CCCCCCceEEEeCCCceeec-----cCC------cEEEEe
Q psy17146 379 SEDSETLDVTYGPR-F-RAR-PYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKVVG-----NSP------NLTLLM 443 (1011)
Q Consensus 379 ~~~s~~l~V~~~P~-~-~~~-p~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~~~~~~-----~~~------~L~I~~ 443 (1011)
.-....+.|..+.. + ... ..-..+.+|+.+.|.|.+ .|+|.+.++|+++....... ... .+.+..
T Consensus 192 ~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~ 271 (741)
T KOG3515|consen 192 FAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRV 271 (741)
T ss_pred ccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccc
Confidence 33444444444322 2 222 233578899999999977 67899999999997554322 112 233333
Q ss_pred eccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeee--ccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEe-----
Q psy17146 444 TSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII--SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI----- 516 (1011)
Q Consensus 444 v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i----- 516 (1011)
-..++.-...|.+.|. ..+...+.+..++... ......+..|+...+.|...+..++..+.|+|+....
T Consensus 272 ~r~~~~~~~kc~a~n~----~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~ 347 (741)
T KOG3515|consen 272 GRQDLQAQLKCKASNL----LAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQK 347 (741)
T ss_pred cccchhhhhhccccCc----cccceeeecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccC
Confidence 3334455666999971 1222233333333322 2333447889999999999999888899999965432
Q ss_pred ---------------------eccCCCceEEEcCCCC--C--cccEEEEEEecceee-cCCceEEEcCCCcEEEEEEEec
Q psy17146 517 ---------------------GVGSSDDYSVHNDVGK--S--EDSETLDVTYGPRFR-ARPYSVQVDRGAGVNLLCDVDG 570 (1011)
Q Consensus 517 ---------------------~~~~~~~y~~~n~~G~--~--~~~~~l~V~~~P~~~-~~p~~~~v~~G~~~~l~C~~~g 570 (1011)
...+.+.|.|.+.... . +....+.+...|.|. .....+...+++.....-.+.+
T Consensus 348 ~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~ 427 (741)
T KOG3515|consen 348 ASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRG 427 (741)
T ss_pred cccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccC
Confidence 1224566777544332 2 334455566666655 3445566667766666555556
Q ss_pred CCC-CeEEEEecCCceee---------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecC-Ccee
Q psy17146 571 NPA-PEITWIHEDSDKVV---------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQF 639 (1011)
Q Consensus 571 ~p~-p~v~W~k~~~~~~~---------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~-~~~~ 639 (1011)
+|. +.+.|.+++-++.. ...+...+.++...|.|.|.|.|+| ..+.....+.+.++..|.+... ....
T Consensus 428 ~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatn-s~gg~~~~~~~~~~~sp~~~~~~~~~~ 506 (741)
T KOG3515|consen 428 APAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATN-SPGGAQAYLLLGVHTSPHNHHLQDQVE 506 (741)
T ss_pred CCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeeecc-CCCceeeEEeeccccCCcccccccccc
Confidence 654 58999998754432 2334455677899999999999999 5667777777889998988854 3444
Q ss_pred eecCCcEEEEEEEEecCC-CCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 640 GIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
...|+.+.+.|.....|. +..+.|.+.|.+....... ..........+.+.+......-.|.|.|.+.|
T Consensus 507 ~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~ 576 (741)
T KOG3515|consen 507 GATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQ----DAPQQQLMAHAQLLVSGNSSLQASETACVVDG 576 (741)
T ss_pred cCCCCcccceeeccccccchhhhcccccCCCCcccccc----cccccccCCccceeecccccccccceEEeecC
Confidence 667888999999988876 4468999988776431111 11111233457888888888888999999999
No 13
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.79 E-value=4.3e-18 Score=172.97 Aligned_cols=152 Identities=22% Similarity=0.294 Sum_probs=119.4
Q ss_pred CceEEEcCCCcEEEEEEEecCC-----------CCeEEEEecCCcee------------------ecCCCcEEEeecCCC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP-----------APEITWIHEDSDKV------------------VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p-----------~p~v~W~k~~~~~~------------------~~~~~~L~I~~v~~~ 601 (1011)
...+.+.+|+++.|.|.+.+.| .+.+.|+|++.... ...+++|.|.+++.+
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 4567889999999999997754 34899999874311 112469999999999
Q ss_pred CCEEEEEEEEecCCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEe-----cCCCCeEEEEECCeEecccCCC
Q psy17146 602 LAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFS-----IPPPEKVTWSYRGEEIGVGSSD 676 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g-----~p~p~~v~W~~~g~~l~~~~~~ 676 (1011)
|+|.|+|.|.| ..+.....+.|.|..++ ....+.+|+.+.|.|.+.+ .|.| +|+|+|||+++. ...
T Consensus 109 DsG~Y~C~a~N-~~~~~~~~i~L~V~~~~-----~~~~~~~G~~v~L~C~~~~~~~~~~p~p-~I~WyKng~~l~--~~~ 179 (227)
T PHA02826 109 DEGIYICTISS-GNICEESTIRLTFDSGT-----INYQFNSGKDSKLHCYGTDGISSTFKDY-TLTWYKNGNIVL--YTD 179 (227)
T ss_pred HCEEEEEEEEE-CCcceEEEEEEEEecCC-----ccceEecCCCEEEEeeCCCCccccCCCc-eEEEEECCEECC--CCC
Confidence 99999999999 56677788888885433 2345778999999999863 4567 999999999987 334
Q ss_pred CeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 677 DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 677 ~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
++.+..+ .+.|.|.+++.+|+|.|+|.|+...+..
T Consensus 180 r~~~~~~------~~~L~I~~V~~~DsG~YtC~a~~~~~g~ 214 (227)
T PHA02826 180 RIQLRNN------NSTLVIKSATHDDSGIYTCNLRFNKNSN 214 (227)
T ss_pred CEEEeCC------CCEEEECcCCHHhCEEEEEEEEEeECCE
Confidence 5655432 3589999999999999999999876533
No 14
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.78 E-value=3.4e-18 Score=173.76 Aligned_cols=166 Identities=18% Similarity=0.249 Sum_probs=114.2
Q ss_pred cCCceeEEecCcEEEEEEEcC------------CCCeeEEeeCCeecCCcccCCCCcc---eEEeecC-CCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVID------------KTGVLQWTKDDFALGPHRNLSGFDR---YAMIGSD-EEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~------------~~~~v~W~k~~~~l~~~~~~~~~~r---~~i~~~~-~~~~~~L~I~~ 96 (1011)
....+.+.+|++|+|.|.+.+ ....+.|+|++....... ...| ..+.... .....+|.|.+
T Consensus 28 ~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~---~~~~~~~~~i~~~~~~~r~~~L~I~~ 104 (227)
T PHA02826 28 DLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRD---SGARTKIKKITHNEIGDRSENLWIGN 104 (227)
T ss_pred CcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEc---CCCccccccccccceecCCCeEEECC
Confidence 357789999999999999854 234899999975421100 0011 0000000 11234899999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccC----CCCCcEEEEEeCC
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISAN----GKPPAEITWIDGT 172 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~----g~P~~~i~W~k~~ 172 (1011)
++.+|+|.|+|.+.|... .....+.|+|...+ ....+.+|+.+.|+|.+.. +.|.|+++|+|++
T Consensus 105 v~~~DsG~Y~C~a~N~~~----~~~~~i~L~V~~~~--------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng 172 (227)
T PHA02826 105 VINIDEGIYICTISSGNI----CEESTIRLTFDSGT--------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNG 172 (227)
T ss_pred CChHHCEEEEEEEEECCc----ceEEEEEEEEecCC--------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECC
Confidence 999999999999999532 23455667774321 1345678999999998543 3468999999999
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
..+..+.++... .+ .++|.|.+++.+|+|.|+|.|......
T Consensus 173 ~~l~~~~r~~~~--~~------~~~L~I~~V~~~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 173 NIVLYTDRIQLR--NN------NSTLVIKSATHDDSGIYTCNLRFNKNS 213 (227)
T ss_pred EECCCCCCEEEe--CC------CCEEEECcCCHHhCEEEEEEEEEeECC
Confidence 888655443311 11 247999999999999999999986543
No 15
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.59 E-value=1.6e-14 Score=127.10 Aligned_cols=91 Identities=23% Similarity=0.361 Sum_probs=77.9
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
|.|. .+.+..+..|+.+.|.|.+.|.|.| .+.|+|+|++|. ...++.+.. ....+.|.|.++..+|+|.|+|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p-~v~W~kdg~~l~--~~~~~~~~~----~~~~s~L~I~~~~~~D~G~Ytc 73 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPI-TCTWMKFRKQIQ--EGEGIKIEN----TENSSKLTITEGQQEHCGCYTL 73 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCC-ceEEEECCEEec--CCCcEEEEe----cCCeeEEEECCCChhhCEEEEE
Confidence 3444 4567889999999999999999999 999999999997 345666654 2335899999999999999999
Q ss_pred EEEcCCCCeEEEEEEEecC
Q psy17146 709 SVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|+|.+|.+.+++.|.|.+
T Consensus 74 ~a~N~~G~~~~~~~l~V~~ 92 (98)
T cd05762 74 EVENKLGSRQAQVNLTVVD 92 (98)
T ss_pred EEEcCCCceeEEEEEEEec
Confidence 9999999999999999964
No 16
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.55 E-value=5.1e-14 Score=121.72 Aligned_cols=96 Identities=31% Similarity=0.635 Sum_probs=87.4
Q ss_pred CCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCC-CEEE
Q psy17146 628 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH-FGVY 706 (1011)
Q Consensus 628 ~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d-~G~Y 706 (1011)
.||.|.....+.+.+|++++|.|.+.+.|+|..|.|.+++..|..+...+|.+.+....++..++|.|.++...| .|.|
T Consensus 1 gpP~i~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 1 GPPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCCEEecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 489998888999999999999999999999988999999998877667899999887778899999999998877 6899
Q ss_pred EEEEEcCCCCeEEEEEE
Q psy17146 707 NCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l 723 (1011)
.|.|.|.+|+++..++|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999999999887
No 17
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.52 E-value=1.1e-07 Score=122.34 Aligned_cols=622 Identities=12% Similarity=0.137 Sum_probs=335.3
Q ss_pred ecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEE
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVS 110 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 110 (1011)
..+....+..|.++.|.-...+. ...+.|.+++..-... ...+ .+ + .-+....|.|.....
T Consensus 1346 ~t~s~~~v~lG~tV~Ftatss~g~~~sw~WDFGDG~ts~t---~st~----------qN----p-tHTY~~pGtYTVTLT 1407 (2740)
T TIGR00864 1346 LQAEKQFFALGDEAQFQACAEPEFNYRYEWDFGGEEAAPL---PAAG----------AE----V-TFIYNDPGCYLVTVA 1407 (2740)
T ss_pred ecccccccccCCeEEEEEecCCCCcEEEEEEeCCCCcccc---ccCC----------Cc----c-eEEcCCCceEEEEEE
Confidence 33333446678899998776543 3378888866321000 0000 00 0 012345677777654
Q ss_pred eCCCCCcceeeeEEEEEEEcCCCCCeeecCCee--eecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecC
Q psy17146 111 TGILGEPAIRSRFATLTVLVPPDPPRIVQGDTL--YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD 188 (1011)
Q Consensus 111 ~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~--~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~ 188 (1011)
-.+.. +..+....++|..+.....+...... .+..+..+.+.-. ..+. ...+.|-.+++....+...
T Consensus 1408 VtN~~--gs~T~s~~I~V~~Pv~~~~ft~ngT~g~~ltlg~pv~Ftd~-StGt-~~Sy~WdFGDGstst~qnp------- 1476 (2740)
T TIGR00864 1408 ASNNI--SAANDSALIEVLEPVGATSFKHNGSHGNNLELGQPYLFSAF-GRAR-NASYLWDFGDGGLLEGPEI------- 1476 (2740)
T ss_pred EECCC--cceeeeeEEEEecCCCcceeeecCCcccccccCcceEEeec-CCCC-ceEEEEECCCCCccCccce-------
Confidence 32211 22344556777655433333211110 0122334444432 3444 3478898876643211100
Q ss_pred CceEEEEEEEEEeeccCcCCcEEEEEE--EeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCc
Q psy17146 189 GRRTTVKSTLVLTPKKEHHNTTFTCQA--QNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSH 266 (1011)
Q Consensus 189 ~~~~~~~~~L~I~~~~~~d~G~Y~C~a--~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~ 266 (1011)
+ ..-...|.|+... .|..|.. +..+.+.|..+..-.........+-.+..+.++-....+. +
T Consensus 1477 --------t-----HtY~~~GtYtVtLTvtN~~Gss--t~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs-~ 1540 (2740)
T TIGR00864 1477 --------L-----HAFNSPGDFNIRLAAANEVGKN--EATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGD-D 1540 (2740)
T ss_pred --------E-----EEcCCCceEEEEEEEECCCCce--EEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCC-c
Confidence 1 1234588888765 4666654 4455565654322111112223344566777775444443 3
Q ss_pred cEEEEEeCCcccCCccc--------cceEEEEeeecccCCcEEEEEEEEEee---------C--------------Cccc
Q psy17146 267 MKYRWYINDQPVPAAAS--------ATELYLTNITRHQHDSIVKCEVQVSVI---------G--------------SNRL 315 (1011)
Q Consensus 267 ~~i~W~~~~~~l~~~~~--------~~~l~i~~~~~~~~~~~~~c~~~~~~~---------~--------------~~~v 315 (1011)
..+.|.+.+.-...... .-..|...++..+..|.-.-...+.+. . ...+
T Consensus 1541 v~ysWdFGDg~ts~~~npt~~yTY~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~ 1620 (2740)
T TIGR00864 1541 VRFSWILCDHCTPIFGGNTIFYTFRSVGTFNIIVTAENDVGAAQASIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYF 1620 (2740)
T ss_pred eeEEEEeCCCCccccCCCceEEeecCCceEEEEEEEecCCCccceeEEEEEeecccceEEEeecccccCCccccccccee
Confidence 78999886542221110 111222222222222211111111111 0 0223
Q ss_pred ccCCcEEEEEEeecCCCccEEEEEECC------eecCCCcCccEEEEeecccccCCcEEEE--EEEcCCccceeeEEEEE
Q psy17146 316 VEGTDVRLYCKAEANPSHMKYRWYIND------QPVPAAASATELYLTNITRHQHDSIVKC--EVHNDVGKSEDSETLDV 387 (1011)
Q Consensus 316 ~~g~~v~l~C~~~~~p~~~~i~W~k~g------~~l~~~~~~~~L~I~~~~~~~d~G~Y~C--~a~n~~g~~~~s~~l~V 387 (1011)
..+..+.|.-.+... .+.++.|..-+ ......+....+ ... +.|.|.. .|.|..|..+.+..+.|
T Consensus 1621 ~t~~~v~l~~~~~~G-TnvsysW~~~~~n~~dg~~~~~tGk~~~v-----t~~-~pG~Y~VtL~aSN~vG~~t~s~~i~v 1693 (2740)
T TIGR00864 1621 ETNHTVQFHAGFKDG-TNLSFSWNAILDNEPDGPAFAGSGKGAKL-----NPL-EAGPCDIFLQAANLLGQATADCTIDF 1693 (2740)
T ss_pred ccCCEEEeeeccCCC-CeeEEEEEEecCCCCCCccccccCceeEE-----ecC-CCceEEEEEEEeecccceeeEEEEEE
Confidence 344556665544433 44688996511 111111121222 222 6787765 45799999988888888
Q ss_pred Eecc-eEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEE--EcCCcce
Q psy17146 388 TYGP-RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS--VMGFPEV 464 (1011)
Q Consensus 388 ~~~P-~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~--n~~~~~~ 464 (1011)
.++- .+........+..|+.+.|.-...+-....++|...+..........+ .-+-...|.|...+. |..+..
T Consensus 1694 ~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~---tHtf~~~G~y~VtVta~N~vss~- 1769 (2740)
T TIGR00864 1694 LEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFM---SHSFPSAGLHLVTMKAFNELGSA- 1769 (2740)
T ss_pred EEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCce---EEEccCCceEEEEEEEEcccccc-
Confidence 7632 344444455667799999998877777889999987653322222211 234566788877665 543322
Q ss_pred eeEEEEEEcCCCe---eeccC--cc-cccCCCeEEEEeEeeeCCCCCeeEEeeCCeE--------eeccCCCceE----E
Q psy17146 465 GAEATVYLKGRPT---IISHR--TQ-FGIPGDTARVECSAFSIPPPEKVTWSYRGEE--------IGVGSSDDYS----V 526 (1011)
Q Consensus 465 s~~~~v~v~~~p~---~~~~~--~~-~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~--------i~~~~~~~y~----~ 526 (1011)
...+.|.|..+-. +.... .. .+..|..+.+.-.+..+.. ..+.|..++.. ....+.|.|+ +
T Consensus 1770 ~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsn-Vsw~W~f~~g~s~~gk~v~~Tf~~aG~ytV~L~A 1848 (2740)
T TIGR00864 1770 NASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTN-VSWCWAIDGGSSKMGKHACMTFPDAGTFAIRLNA 1848 (2740)
T ss_pred ceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCe-eEEEEEeCCCCccccceeEEecCCCeEEEEEEEE
Confidence 3345555544332 11111 11 4456777777666554333 37888776543 2234567776 5
Q ss_pred EcCCCCCcccEEEEEEecc-eeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec-CCCcEEEeecCCCCCE
Q psy17146 527 HNDVGKSEDSETLDVTYGP-RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG-NSPNLTLLMTSDDLAG 604 (1011)
Q Consensus 527 ~n~~G~~~~~~~l~V~~~P-~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~-~~~~L~I~~v~~~d~G 604 (1011)
.|.++....+..+.|+.++ .+........+..|+.++|.+.+...+.-.+.|...+...... .+.++. . ....-|
T Consensus 1849 sN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~~-H--sY~~~G 1925 (2740)
T TIGR00864 1849 SNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRFS-H--SFPRVD 1925 (2740)
T ss_pred EcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeEE-e--ecCCCC
Confidence 8999999999999999887 4555566677889999999999988888899998886554433 222221 2 333445
Q ss_pred EE--EEEEEecCCCceeeEEEEEEcCC-CeeecCC--ceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeE
Q psy17146 605 RY--YCKASVMGFPEVGAEATVYLKGR-PTIISHR--TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS 679 (1011)
Q Consensus 605 ~Y--~C~a~n~~~~~~s~~~~l~V~~~-P~i~~~~--~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~ 679 (1011)
.| +..|.| ..+.....+.+.|.++ .-+.... ...+..|+..++...+...-+- .+.|+++-+.+.. ...+.
T Consensus 1926 ~Y~VtV~A~N-~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V-~f~W~f~~~~~~g--~~~~~ 2001 (2740)
T TIGR00864 1926 DHMVNLRAKN-EVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPV-AFAWTFDLHHLHG--DSLVI 2001 (2740)
T ss_pred cEEEEEEEEe-ccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCce-EEEEEeeecccCC--Cccee
Confidence 55 555667 4566777777777655 2221111 1126789999999988655444 7999976444331 11111
Q ss_pred EecCCcCccceeEEEEcCCCCCCCEEEEE--EEEcCCCCeEEEEEEEecCC
Q psy17146 680 VLEDPLKEGIKSTLIIRESRHDHFGVYNC--SVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 680 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C--~a~N~~G~~~~~~~l~V~~~ 728 (1011)
.. +..-+.+. ...|.|.. .|.|.+|+......+.|+..
T Consensus 2002 ~~------G~~vty~~-----~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~ 2041 (2740)
T TIGR00864 2002 HM------GKDVSYTA-----EAAGLLEIQLGAFNALGAENITLQLEAQDA 2041 (2740)
T ss_pred ec------CCceEEcc-----CCCcEEEEEEEEEcccCcccccEEEEEEeh
Confidence 11 11122222 35777765 67799999888888888765
No 18
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.51 E-value=1.8e-13 Score=117.16 Aligned_cols=83 Identities=25% Similarity=0.411 Sum_probs=71.4
Q ss_pred ceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 637 TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
...+.+|+++.|.|.+.|.|.| .++|+|+++++... ..++.+... ...+.|.|.++.++|+|.|+|.|.|.+|+
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P-~v~W~k~~~~i~~~-~~r~~~~~~----~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~ 77 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAP-TVTWSRGDKAFTET-EGRVRVESY----KDLSSFVIEGAEREDEGVYTITVTNPVGE 77 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCC-eEEEEECCEECccC-CCeEEEEEc----CCeEEEEECCCccCcCEEEEEEEEeCCCc
Confidence 4568899999999999999999 99999999999742 345666542 33579999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy17146 717 DSVEIMLKP 725 (1011)
Q Consensus 717 ~~~~~~l~V 725 (1011)
+++++.|.|
T Consensus 78 ~~~~~~l~V 86 (86)
T cd05894 78 DHASLFVKV 86 (86)
T ss_pred EEEEEEEEC
Confidence 999998875
No 19
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.51 E-value=9.9e-14 Score=119.58 Aligned_cols=87 Identities=22% Similarity=0.388 Sum_probs=72.7
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
||.|. .+.+..+.+|+.++|.|.+.|.|.| .++|+|++.++.. ..++... .+.|.|.++..+|+|.|+
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P-~v~W~k~~~~~~~--~~~~~~~--------~~~L~I~~v~~~D~G~Y~ 69 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVP-VIRWRKILEPMPA--TAEISMS--------GAVLKIFNIQPEDEGTYE 69 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCC-EEEEEECCcCCCC--CCEEecC--------CCEEEECcCChhhCEEEE
Confidence 46666 4567889999999999999999999 9999999987752 2222221 258999999999999999
Q ss_pred EEEEcCCCCeEEEEEEEec
Q psy17146 708 CSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 708 C~a~N~~G~~~~~~~l~V~ 726 (1011)
|.|.|.+|+++..+.|.|+
T Consensus 70 C~A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 70 CEAENIKGKDKHQARVYVQ 88 (88)
T ss_pred EEEEcCCCceEEEEEEEEC
Confidence 9999999999999999873
No 20
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.50 E-value=2.3e-13 Score=120.39 Aligned_cols=96 Identities=42% Similarity=0.777 Sum_probs=81.7
Q ss_pred CCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCC-CEEE
Q psy17146 628 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH-FGVY 706 (1011)
Q Consensus 628 ~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d-~G~Y 706 (1011)
.||.|..+....+.+|+.+.|.|.+.|.|.|..|.|++++..+......++.+.......+..+.|.|.++..+| .|.|
T Consensus 1 ~pp~i~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 1 GPPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCCeEcCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 478888777788999999999999999999955999999999886555788887654445556899999999855 8999
Q ss_pred EEEEEcCCCCeEEEEEE
Q psy17146 707 NCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l 723 (1011)
+|.|.|.+|.+++.+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999999998876
No 21
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.49 E-value=3.3e-13 Score=116.21 Aligned_cols=83 Identities=27% Similarity=0.434 Sum_probs=70.0
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
|+.++|.|.+.|.|++ .++|+|++..+.. ...++.+..........++|.|.++..+|+|.|+|.|.|.+|.+++.+.
T Consensus 1 g~~~~l~C~~~g~p~~-~i~W~k~~~~i~~-~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAHGEKPI-IVRWEKEDRIINP-EMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEEECCCCC-EEEEeeCCEECCC-CCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 7899999999999998 9999999998864 2356666543223344688999999999999999999999999999999
Q ss_pred EEecC
Q psy17146 723 LKPQK 727 (1011)
Q Consensus 723 l~V~~ 727 (1011)
|.|.+
T Consensus 79 L~V~~ 83 (88)
T cd05735 79 LTVQE 83 (88)
T ss_pred EEEeC
Confidence 99964
No 22
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.48 E-value=2.2e-13 Score=112.58 Aligned_cols=75 Identities=28% Similarity=0.519 Sum_probs=63.6
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
|.|.|.+.|.|.| .|+|+|+|+.+.. ...++.+..+ +....+|.|.++..+|+|.|+|.|.|.+|+.+..+.|.|
T Consensus 1 v~l~C~v~G~P~P-~i~W~k~~~~i~~-~~~r~~~~~~---~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPP-KIFWKRNNEMVQY-NTDRISLYQD---NSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCC-eEEEEECCEECcC-CCCeEEEEEc---CCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 5799999999999 9999999999874 3356776543 222358999999999999999999999999999998875
No 23
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.47 E-value=4.3e-13 Score=117.08 Aligned_cols=84 Identities=26% Similarity=0.544 Sum_probs=71.0
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
....+.+|++++|.|.+.|.|.| ++.|+|+|.++.. ..++.+... .+...+|.|.++..+|+|.|+|.|+|.+|
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p-~v~W~k~g~~l~~--~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDP-EVSWLKNDQALAL--SDHYNVKVE---QGKYASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCC-eEEEEECCEECcc--CCCEEEEEc---CCCEEEEEEccCChhhCEEEEEEEEECCC
Confidence 45678999999999999999999 9999999999873 445555432 22346899999999999999999999999
Q ss_pred CeEEEEEEEe
Q psy17146 716 SDSVEIMLKP 725 (1011)
Q Consensus 716 ~~~~~~~l~V 725 (1011)
+++..+.|.|
T Consensus 83 ~~~~~~~v~v 92 (92)
T cd05737 83 GETVDVTVSV 92 (92)
T ss_pred cceEEEEEeC
Confidence 9999988865
No 24
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.47 E-value=2.9e-13 Score=111.61 Aligned_cols=73 Identities=26% Similarity=0.419 Sum_probs=64.9
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
|+.+.|.|.+.|.|.| +|+|+|++..+. ...++.+..+ ++|.|.+++.+|+|.|+|.|+|.+|+++.++.
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~k~~~~l~--~~~r~~~~~~-------g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 70 (73)
T cd05852 1 GGRVIIECKPKAAPKP-KFSWSKGTELLV--NNSRISIWDD-------GSLEILNITKLDEGSYTCFAENNRGKANSTGV 70 (73)
T ss_pred CCeEEEEEecceeCCC-EEEEEeCCEecc--cCCCEEEcCC-------CEEEECcCChhHCEEEEEEEECCCCceeEEEE
Confidence 6889999999999999 999999999876 4567776543 58999999999999999999999999999998
Q ss_pred EEe
Q psy17146 723 LKP 725 (1011)
Q Consensus 723 l~V 725 (1011)
|+|
T Consensus 71 l~~ 73 (73)
T cd05852 71 LSV 73 (73)
T ss_pred EEC
Confidence 875
No 25
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.46 E-value=6.6e-13 Score=115.99 Aligned_cols=89 Identities=29% Similarity=0.413 Sum_probs=75.3
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
||.|. .+.+..+.+|+.+.|.|.+.|.|.| .+.|+|+|..+. ...++.+.. ....+.|.|.++..+|+|.|+
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p-~v~W~k~g~~l~--~~~~~~~~~----~~~~~~L~i~~~~~~D~G~Y~ 75 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAP-TVTWMREGQIIV--SSQRHQITS----TEYKSTFEISKVQMSDEGNYT 75 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCC-EEEEEECCEECC--CCCcEEEEE----cCCeeEEEECCCCcccCEeEE
Confidence 56666 5567889999999999999999999 999999999876 345666543 233579999999999999999
Q ss_pred EEEEcCCCCeEEEEEEE
Q psy17146 708 CSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 708 C~a~N~~G~~~~~~~l~ 724 (1011)
|.|+|.+|.++.++.|+
T Consensus 76 C~a~N~~G~~~~~~~l~ 92 (92)
T cd05747 76 VVVENSEGKQEAQFTLT 92 (92)
T ss_pred EEEEcCCCCEeEEEEeC
Confidence 99999999999988763
No 26
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.45 E-value=7.3e-13 Score=117.17 Aligned_cols=93 Identities=23% Similarity=0.435 Sum_probs=75.3
Q ss_pred CCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEeccc---CCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 628 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIGVG---SSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 628 ~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~~~---~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
.+|.|..+.+..+.+|+.++|.|.+.|.|.| .|.|+|+ |..+... ...++.+.. ....+.|.|.+++.+|
T Consensus 1 ~~p~i~~~~~~~~~~G~~v~l~C~~~G~P~p-~i~W~k~~~g~~~~~~~~~~~~r~~v~~----~~~~~~L~I~~v~~~D 75 (98)
T cd05870 1 VQPHIIQLKNETTVENGAATLSCKAEGEPIP-EITWKRASDGHTFSEGDKSPDGRIEVKG----QHGESSLHIKDVKLSD 75 (98)
T ss_pred CCCEEEeeccEEEcCCCcEEEEEecccCCCC-eEEEEECCCCceeccCCcCcCceEEEee----cCCeeEEEEeeCCcCC
Confidence 3688888888999999999999999999999 9999994 4444321 234555542 2234689999999999
Q ss_pred CEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 703 FGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+|.|+|.|.|.+|....++.|.|
T Consensus 76 ~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 76 SGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred CEEEEEEEeccCCcceeEEEEeC
Confidence 99999999999999999988864
No 27
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.45 E-value=7.2e-13 Score=119.14 Aligned_cols=101 Identities=18% Similarity=0.343 Sum_probs=77.1
Q ss_pred EcCCCeeecCCc--eee---ecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC-
Q psy17146 626 LKGRPTIISHRT--QFG---IPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR- 699 (1011)
Q Consensus 626 V~~~P~i~~~~~--~~v---~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~- 699 (1011)
|..+|.|..++. ..+ ..|..++|.|.+.|.|.| .++|+|||..+.. ...++.+..........+.|+|.++.
T Consensus 1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p-~i~W~k~g~~l~~-~~~r~~~~~~~~~~~~~s~L~I~~v~~ 78 (109)
T cd05773 1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRV-QFRWAKNGVPLDL-GNPRYEETTEHTGTVHTSILTIINVSA 78 (109)
T ss_pred CccccccccCCceEEEEEecCCCCEEEEEEECcccCCC-EEEEEECCEECCC-CCCeEEEEeeccCccceeEEEECcCCc
Confidence 456788875433 222 256899999999999999 9999999999864 23456544322222335789999997
Q ss_pred CCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 700 HDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
.+|.|.|+|.|.|.+|.++..+.|.|.+.
T Consensus 79 ~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~ 107 (109)
T cd05773 79 ALDYALFTCTAHNSLGEDSLDIQLVSTSR 107 (109)
T ss_pred cCCCEEEEEEEEeCCccCcEEEEEEecCC
Confidence 69999999999999999999999998643
No 28
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.45 E-value=4e-13 Score=111.92 Aligned_cols=74 Identities=28% Similarity=0.460 Sum_probs=64.1
Q ss_pred cCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
+|+++.|.|.+.|.|.| .|+|+|+|..+.. ..++.+.. .+.|.|.+++.+|+|.|+|.|.|.+|+.+.++
T Consensus 1 eG~~v~l~C~~~g~P~p-~i~W~k~g~~~~~--~~~~~~~~-------~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 70 (74)
T cd05745 1 EGQTVDFLCEAQGYPQP-VIAWTKGGSQLSV--DRRHLVLS-------SGTLRISRVALHDQGQYECQAVNIVGSQRTVA 70 (74)
T ss_pred CCCeEEEEeECCEecCC-EEEEEECCEECCC--CCCeEEcc-------CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEE
Confidence 58999999999999999 9999999998863 33444433 25899999999999999999999999999999
Q ss_pred EEEe
Q psy17146 722 MLKP 725 (1011)
Q Consensus 722 ~l~V 725 (1011)
.|.|
T Consensus 71 ~L~V 74 (74)
T cd05745 71 QLTV 74 (74)
T ss_pred EEeC
Confidence 8875
No 29
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.44 E-value=9.9e-13 Score=116.28 Aligned_cols=92 Identities=23% Similarity=0.406 Sum_probs=76.0
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccC---CCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS---SDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~---~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
+|+|....+..+.+|+.++|.|.+.|.|.| .+.|++++..+.... ..++.+.. ....+.|.|.+++.+|+|.
T Consensus 2 ~P~i~~~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~ 76 (96)
T cd05732 2 QPKITYLENQTAVELEQITLTCEAEGDPIP-EITWRRATRNFSEGDKSLDGRIVVRG----HARVSSLTLKDVQLTDAGR 76 (96)
T ss_pred CccceecCceeEecCCcEEEEEEEeEcCCC-cEEEEECCcccCCCCccccceEEEeC----CccEEEEEECcCCcCcCEE
Confidence 688887778889999999999999999999 999999987665321 23444432 2335799999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEe
Q psy17146 706 YNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V 725 (1011)
|+|.|.|.+|.++.++.|.|
T Consensus 77 Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 77 YDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred eEEEEEeCCCCcEEEEEEeC
Confidence 99999999999999998864
No 30
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.44 E-value=6.7e-13 Score=109.96 Aligned_cols=75 Identities=25% Similarity=0.415 Sum_probs=63.1
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
|+|.|.+.|.|.| .|+|+|++.++.. ...++.+..+ ......|.|.++..+|+|.|+|.|.|.+|+.+.++.|.|
T Consensus 1 v~l~C~v~G~P~P-~v~W~k~~~~l~~-~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHP-QIFWKKENESLTH-NTDRVSMHQD---NCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCC-EEEEEECCEECCC-CCCeEEEEEc---CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 5799999999999 9999999999874 3456666543 122347999999999999999999999999999998865
No 31
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.44 E-value=1.1e-12 Score=115.44 Aligned_cols=96 Identities=23% Similarity=0.309 Sum_probs=79.7
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
|.|...|+++.+.+|+++.|.|.+.+ +.+.+.|+|++..+.. ..|+.+... .....|+|.+++.+|+|.|+
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~------~~~~~~~~~--~~~s~L~I~~~~~~D~G~Yt 72 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQE------GEGIKIENT--ENSSKLTITEGQQEHCGCYT 72 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecC------CCcEEEEec--CCeeEEEECCCChhhCEEEE
Confidence 57889999999999999999999998 6779999999987742 235555433 23468999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEEcCCCCC
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVLVPPDPP 135 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~~~p~~~ 135 (1011)
|.+.|.. +.....+.|+|.+.|.+|
T Consensus 73 c~a~N~~----G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 73 LEVENKL----GSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred EEEEcCC----CceeEEEEEEEecCCCCC
Confidence 9999964 446778999999998776
No 32
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.44 E-value=9.3e-13 Score=115.83 Aligned_cols=88 Identities=20% Similarity=0.264 Sum_probs=70.6
Q ss_pred CceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccCCCCeEEecCC-cCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 636 RTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDDYSVLEDP-LKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
....+.+|+.++|.|.+.| .|+| .+.|+|||.+|.. .....+.... ......++|.|..+..+|+|.|+|.|+|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p-~v~W~Kdg~~i~~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~ 87 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPP-HINWTYDNRTLTN--KLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNS 87 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCC-ccEEEeCCeeCCC--CcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECC
Confidence 4567889999999999999 7888 9999999999973 2333322210 01123588999999999999999999999
Q ss_pred CCCeEEEEEEEec
Q psy17146 714 YGSDSVEIMLKPQ 726 (1011)
Q Consensus 714 ~G~~~~~~~l~V~ 726 (1011)
.|.++..+.|.|+
T Consensus 88 ~G~~~~t~~L~V~ 100 (101)
T cd04975 88 DASKSLTFELYVN 100 (101)
T ss_pred CccEEEEEEEEEE
Confidence 9999999999874
No 33
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.43 E-value=1.7e-12 Score=114.54 Aligned_cols=92 Identities=24% Similarity=0.348 Sum_probs=72.5
Q ss_pred CCeeecCCcee-eecCCcEEEEEEEEecCCCCeEEEEECCeEecccC---CCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 629 RPTIISHRTQF-GIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS---SDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 629 ~P~i~~~~~~~-v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~---~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
+|+|...++.. +..|+.++|.|.+.|.|.| .++|++++..+.... ..++.+.. ....+.|.|.++..+|+|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~v~~----~~~~~~L~I~~v~~~D~G 76 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIP-SITWRTSTRNISSEEKTLDGHIVVRS----HARVSSLTLKYIQYTDAG 76 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCC-EEEEEECCccccCCccccCccEEEEc----CccEEEEEEecCccCcCE
Confidence 57777544444 4558999999999999999 999999998775321 23344333 223478999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEe
Q psy17146 705 VYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.|+|.|.|.+|.+++++.|.|
T Consensus 77 ~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 77 EYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEEEecCCCCeeEEEEEEC
Confidence 999999999999999998875
No 34
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.43 E-value=1.1e-12 Score=113.08 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=72.9
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----ecCCCcEEEeecCCCCCEEEEEEEEecCCCce
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 618 (1011)
+|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+. ...++.|.|.++..+|+|.|+|.|.| ..|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N-~~G~~ 79 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAEN-IKGKD 79 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEc-CCCce
Confidence 5888999999999999999999999999999999999975432 23456899999999999999999999 67888
Q ss_pred eeEEEEEEc
Q psy17146 619 GAEATVYLK 627 (1011)
Q Consensus 619 s~~~~l~V~ 627 (1011)
+..+.|.|+
T Consensus 80 ~~~~~l~V~ 88 (88)
T cd05851 80 KHQARVYVQ 88 (88)
T ss_pred EEEEEEEEC
Confidence 888888874
No 35
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.41 E-value=1.8e-12 Score=114.27 Aligned_cols=90 Identities=31% Similarity=0.482 Sum_probs=73.3
Q ss_pred CCeeecC---CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 629 RPTIISH---RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 629 ~P~i~~~---~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
||.|... .+..+..|+++.|.|.+.|.|.| .+.|+|+|..+... ..++....+ .+.|.|.+++.+|.|.
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~-~~~~~~~~~------~~~L~I~~v~~~D~G~ 72 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEP-TMTWTKDGEPIESG-EEKYSFNED------GSEMTILDVDKLDEAE 72 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCC-EEEEEECCEECcCC-CCEEEEeCC------CCEEEECCCChhhCEE
Confidence 4666532 34568899999999999999999 99999999988642 234443321 3579999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEec
Q psy17146 706 YNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|+|.|+|.+|.++.++.|.|.
T Consensus 73 Y~C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 73 YTCIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred EEEEEEcCCCeEEEEEEEEEE
Confidence 999999999999999999874
No 36
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.41 E-value=2.5e-12 Score=112.35 Aligned_cols=89 Identities=28% Similarity=0.540 Sum_probs=77.5
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
|.|. .+.+..+.+|++++|.|.+.|.|.| ++.|+++|..+.. ..++.+... +..++|.|.++..+|+|.|+|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~-~v~W~~~~~~l~~--~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C 73 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPP-TVTWYKNGRPLTS--SQRYQIESD----GGSSSLTIKNVTREDAGTYTC 73 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSS-EEEEEETTEEEES--SSSEEEEEE----TTEEEEEESSESGGGSEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCC-cccccccccceee--eeeeeeecc----cceeEEccCCCChhhCEEEEE
Confidence 4555 4577889999999999999999999 9999999999984 566666552 357899999999999999999
Q ss_pred EEEcCCCCeEEEEEEEe
Q psy17146 709 SVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V 725 (1011)
.|.|..|..++++.|.|
T Consensus 74 ~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 74 VASNSSGEATASVNLTV 90 (90)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEECCCEEEEEEEEEC
Confidence 99999999999999875
No 37
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.41 E-value=2.1e-12 Score=108.19 Aligned_cols=74 Identities=28% Similarity=0.521 Sum_probs=63.2
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCC-CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS-DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
|+.++|.|.+.|.|.| +++|+|+|.++..... .++.+. .+.|.|.+++.+|+|.|+|.|.|.+|.....+
T Consensus 1 G~~v~l~C~~~G~P~p-~i~W~k~g~~i~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 71 (76)
T cd05867 1 GETARLDCQVEGIPTP-NITWSINGAPIEGTDPDPRRHVS--------SGALILTDVQPSDTAVYQCEARNRHGNLLANA 71 (76)
T ss_pred CCeEEEEEEeeEeCCC-eEEEEECCEECCCCCCCceEEee--------CCEEEECCCChhhCEEEEEEEECCCCeEEEEE
Confidence 7899999999999999 9999999998874322 233332 26899999999999999999999999999999
Q ss_pred EEEe
Q psy17146 722 MLKP 725 (1011)
Q Consensus 722 ~l~V 725 (1011)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd05867 72 HVHV 75 (76)
T ss_pred EEEE
Confidence 9876
No 38
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.40 E-value=2.1e-12 Score=112.69 Aligned_cols=86 Identities=23% Similarity=0.369 Sum_probs=69.3
Q ss_pred CCceeeecCCcEEEEEEEEecCC-CCeEEEEE-CCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPP-PEKVTWSY-RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
+....+..|++++|.|.+.|.|. | .++|++ +|..+.. ...++.+..+ ....++|.|.++..+|+|.|+|.|+|
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p-~i~W~~~~g~~l~~-~~~r~~v~~~---~~~~~~L~I~~v~~~D~G~YtC~A~N 81 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDK-DISWFSPNGEKLTP-NQQRISVVRN---DDYSSTLTIYNANIDDAGIYKCVVSN 81 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCC-EEEEECCCCcCccc-cCCeEEEEeC---CCCceEEEEeccChhhCEEEEEEEEc
Confidence 44556889999999999999995 7 999998 7876653 2335555432 23357999999999999999999999
Q ss_pred CC-CCeEEEEEEEe
Q psy17146 713 PY-GSDSVEIMLKP 725 (1011)
Q Consensus 713 ~~-G~~~~~~~l~V 725 (1011)
.+ |..++++.|.|
T Consensus 82 ~~~g~~~~s~~l~v 95 (96)
T cd05865 82 EDEGESEATVNVKI 95 (96)
T ss_pred CCCCcEEEEEEEEE
Confidence 97 89999998876
No 39
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.40 E-value=1.9e-12 Score=108.09 Aligned_cols=75 Identities=24% Similarity=0.499 Sum_probs=62.7
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
|+.++|.|.+.|.|.| +|+|+|+|+++............ ...|.|.+++.+|.|.|+|.|+|.+|...+++.
T Consensus 1 g~~~~l~C~a~G~P~P-~i~W~k~g~~i~~~~~~~~~~~~-------~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd05868 1 GEDGTLICRANGNPKP-SISWLTNGVPIEIAPTDPSRKVD-------GDTIIFSKVQERSSAVYQCNASNEYGYLLANAF 72 (76)
T ss_pred CCCEEEEEEeeEeCCC-eEEEEECCEEccccCCCceEEec-------CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEE
Confidence 6889999999999999 99999999998643222222211 247999999999999999999999999999999
Q ss_pred EEe
Q psy17146 723 LKP 725 (1011)
Q Consensus 723 l~V 725 (1011)
|.|
T Consensus 73 l~v 75 (76)
T cd05868 73 VNV 75 (76)
T ss_pred EEe
Confidence 986
No 40
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.40 E-value=1.2e-12 Score=104.90 Aligned_cols=65 Identities=20% Similarity=0.325 Sum_probs=56.9
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
++|.|.+.|.|.| .++|+|||+++... ...+.|.|.++..+|+|.|+|.|+|.+|..++++.|.+
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~--------------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPP-EFQWYKDGKLISGK--------------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCC-EEEEEECCEECccc--------------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 4799999999999 99999999998621 12369999999999999999999999998888887765
No 41
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.40 E-value=1.9e-12 Score=110.95 Aligned_cols=81 Identities=23% Similarity=0.323 Sum_probs=70.2
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
.+.+..+..|+.++|.|.+.|.|.| .+.|+|+|..+. ...++.+.. ..|.|.++..+|+|.|+|.|.|.
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p-~v~W~k~g~~~~--~~~~~~~~~--------~~L~i~~~~~~D~G~Y~C~a~N~ 73 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRP-AYRWLKNGQPLA--SENRIEVEA--------GDLRITKLSLSDSGMYQCVAENK 73 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCC-EEEEEECCEECC--CCCeEEEeC--------CEEEEeeCCHHHCEEEEEEEECC
Confidence 4567789999999999999999999 999999999886 334454432 58999999999999999999999
Q ss_pred CCCeEEEEEEEe
Q psy17146 714 YGSDSVEIMLKP 725 (1011)
Q Consensus 714 ~G~~~~~~~l~V 725 (1011)
+|...+++.|.|
T Consensus 74 ~G~~~~~~~l~V 85 (85)
T cd05728 74 HGTIYASAELAV 85 (85)
T ss_pred CCeEEEEEEEEC
Confidence 999999998875
No 42
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.39 E-value=2.5e-12 Score=106.97 Aligned_cols=75 Identities=28% Similarity=0.500 Sum_probs=62.5
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
++|.|.+.|.|.| .|.|+|+|..+.. ...++.+..+ .....+|.|.++..+|+|.|+|.|.|.+|+.+..+.|.|
T Consensus 1 v~L~C~v~G~P~P-~v~W~k~~~~i~~-~~~r~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPP-QIFWKKNNEMLTY-NTDRISLYQD---NCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCC-eEEEEECCEECCC-CCCcEEEEEc---CCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 4799999999999 9999999999874 3346665442 122457999999999999999999999999999998864
No 43
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.39 E-value=1.9e-12 Score=114.14 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=69.5
Q ss_pred ceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecC--CcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 637 TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLED--PLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~--~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
...+..|+.++|.|.+.|.|+| .+.|+|||++|... .+...... .......++|.|.++..+|+|.|+|.|+|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P-~v~W~kdg~~l~~~--~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~ 88 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPP-QIRWLKDNRTLIEN--LTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNED 88 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCC-ceEEEECCEECcCC--cceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCC
Confidence 5668889999999999999999 99999999998742 22222111 0011234799999999999999999999999
Q ss_pred CCeEEEEEEEec
Q psy17146 715 GSDSVEIMLKPQ 726 (1011)
Q Consensus 715 G~~~~~~~l~V~ 726 (1011)
|+.+.++.|.|+
T Consensus 89 g~~~~t~~l~V~ 100 (101)
T cd05859 89 AVKSYTFALQIQ 100 (101)
T ss_pred ceEEEEEEEEEE
Confidence 999999988874
No 44
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.39 E-value=2.7e-12 Score=105.75 Aligned_cols=71 Identities=23% Similarity=0.423 Sum_probs=60.9
Q ss_pred cEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 645 ~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
.+.|.|.+.|.|.| .++|+|+|..+. ...++.+..+ ..|.|.++..+|+|.|+|.|.|.+|+.++++.|.
T Consensus 1 ~v~l~C~~~G~P~p-~v~W~k~g~~~~--~~~~~~~~~~-------~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTP-TVKWVKNGDMVI--PSDYFKIVKE-------HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCC-EEEEEECCeECC--CCCCEEEEec-------CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 47899999999999 999999999886 3345555442 4688999999999999999999999999999886
Q ss_pred e
Q psy17146 725 P 725 (1011)
Q Consensus 725 V 725 (1011)
|
T Consensus 71 V 71 (71)
T cd05723 71 I 71 (71)
T ss_pred C
Confidence 5
No 45
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.39 E-value=3.5e-12 Score=106.34 Aligned_cols=74 Identities=27% Similarity=0.476 Sum_probs=63.5
Q ss_pred cEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 645 ~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
++.|.|.+.|.|.| .+.|+|+|..+. ...++.+.. ....+.|.|.++..+|+|.|+|.|.|.+|.++.++.|.
T Consensus 1 ~~~l~c~~~G~P~p-~v~W~k~g~~l~--~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTP-TVTWSKDGKPLK--LSGRVQIET----TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCC-eEEEEECCEEcC--CCCeEEEEE----CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 47899999999999 999999999985 345565543 23358999999999999999999999999999999887
Q ss_pred e
Q psy17146 725 P 725 (1011)
Q Consensus 725 V 725 (1011)
|
T Consensus 74 V 74 (74)
T cd05748 74 V 74 (74)
T ss_pred C
Confidence 5
No 46
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.39 E-value=5e-12 Score=109.88 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=69.0
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
.+.+..+..|+.+.|.|.+.|.|.| .++|+++|..+.. ........ ....+.|.|.++..+|.|.|+|.|+|.
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p-~v~W~~~g~~~~~--~~~~~~~~----~~~~~~L~I~~v~~~D~g~Y~C~A~N~ 78 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLP-KVEWIIAGLIVIQ--TRTDTLET----TVDIYNLQLSNITSETQTTVTCTAENP 78 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCC-eEEEEECCEEccC--CccEEEEe----cCCEEEEEEecCCcccCEEEEEEEECC
Confidence 3445668999999999999999999 9999999998763 22222111 123578999999999999999999999
Q ss_pred CCCeEEEEEEEe
Q psy17146 714 YGSDSVEIMLKP 725 (1011)
Q Consensus 714 ~G~~~~~~~l~V 725 (1011)
+|++++++.|.|
T Consensus 79 ~G~~~~~~~L~v 90 (90)
T cd04972 79 VGQANVSVQVTV 90 (90)
T ss_pred CCceeEEEEEeC
Confidence 999999998864
No 47
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.38 E-value=4.7e-12 Score=110.17 Aligned_cols=85 Identities=27% Similarity=0.539 Sum_probs=70.7
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
|....+.+|+.+.|.|.+.|.|.| .+.|+++|..+.. ..++.+... .+..++|.|.+++.+|+|.|+|.|.|.+
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p-~i~W~k~~~~~~~--~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 81 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDP-EVIWFKNDQDIEL--SEHYSVKLE---QGKYASLTIKGVTSEDSGKYSINVKNKY 81 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCC-eEEEEECCEECCC--CCCEEEEEc---CCCEEEEEECCCChhhCEEEEEEEEeCC
Confidence 446678999999999999999999 8999999998863 345544332 2223689999999999999999999999
Q ss_pred CCeEEEEEEEe
Q psy17146 715 GSDSVEIMLKP 725 (1011)
Q Consensus 715 G~~~~~~~l~V 725 (1011)
|.+.+++.|.|
T Consensus 82 G~~~~~~~v~~ 92 (92)
T cd05891 82 GGETVDVTVSV 92 (92)
T ss_pred CceeeEEEEEC
Confidence 99999998875
No 48
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.38 E-value=4.2e-12 Score=108.42 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=64.8
Q ss_pred CcEEEEEEEEecCCC-CeEEEEECCeEecccC-CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 644 DTARVECSAFSIPPP-EKVTWSYRGEEIGVGS-SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 644 ~~v~L~C~~~g~p~p-~~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
++++|.|.+.|+|.| ..++|++||.++.... ..++.+... ....++|.|.+++.+|+|.|+|.|.|.+|+.++++
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~ 77 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEV---KETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASA 77 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEe---cceEeEEEEccCChhhCeEEEEEEecCCCCEEEEE
Confidence 468999999999987 3689999999986532 334433221 12247999999999999999999999999999999
Q ss_pred EEEecC
Q psy17146 722 MLKPQK 727 (1011)
Q Consensus 722 ~l~V~~ 727 (1011)
.|.|.+
T Consensus 78 ~L~V~~ 83 (85)
T cd05854 78 TLVVRG 83 (85)
T ss_pred EEEEEC
Confidence 999864
No 49
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.37 E-value=5.4e-12 Score=109.29 Aligned_cols=85 Identities=21% Similarity=0.422 Sum_probs=69.8
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
|.+. .+....+.+|+.++|.|.+.|.|.| +++|+|++..+.. ...+.. ..+.|.|.+++.+|+|.|+|
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p-~v~W~k~~~~~~~--~~~~~~--------~~~~L~i~~v~~~D~G~Y~C 70 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVP-QIKWRKVDGSMPS--SAEISM--------SGAVLKIPNIQFEDEGTYEC 70 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCC-EEEEEECCCcCCC--ccEEEE--------eCCEEEECCCCcccCEEEEE
Confidence 3343 4567778999999999999999999 9999999876642 222221 13689999999999999999
Q ss_pred EEEcCCCCeEEEEEEEe
Q psy17146 709 SVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V 725 (1011)
.|.|..|....++.|.|
T Consensus 71 ~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 71 EAENIKGKDTHQGRIYV 87 (88)
T ss_pred EEEECCCcEEEEEEEEE
Confidence 99999999999999887
No 50
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.37 E-value=3.9e-12 Score=105.65 Aligned_cols=73 Identities=25% Similarity=0.437 Sum_probs=64.0
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
|+.+.|.|.+.|.|.| .++|+|++..+. ...++.+..+ ..|.|.+++.+|+|.|+|.|.|.+|+.+.++.
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~~~~~~--~~~~~~~~~~-------~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 70 (73)
T cd04969 1 GGDVIIECKPKAAPKP-TISWSKGTELLT--NSSRICIWPD-------GSLEILNVTKSDEGKYTCFAENFFGKANSTGS 70 (73)
T ss_pred CCeEEEEEeeeEcCCC-EEEEEECCEEcc--cCCCEEECCC-------CeEEEccCChhHCEEEEEEEECCCCceEEEEE
Confidence 6889999999999999 999999999886 3456665442 57999999999999999999999999999998
Q ss_pred EEe
Q psy17146 723 LKP 725 (1011)
Q Consensus 723 l~V 725 (1011)
|.|
T Consensus 71 l~V 73 (73)
T cd04969 71 LSV 73 (73)
T ss_pred EEC
Confidence 875
No 51
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.34 E-value=4e-12 Score=104.15 Aligned_cols=68 Identities=29% Similarity=0.575 Sum_probs=59.4
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
|.|.|.+.|.|.| .++|+|+|..+. ...++.+.. .+.|.|.++..+|+|.|+|.|.|.+|.++.++.|
T Consensus 1 v~L~C~~~g~P~p-~i~W~k~g~~~~--~~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEP-TITWNKDGVQVT--ESGKFHISP-------EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCC-EEEEEECCEECC--CCCCEEECC-------CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 5799999999999 899999999886 345666544 2689999999999999999999999999998877
No 52
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.33 E-value=7.7e-12 Score=105.11 Aligned_cols=75 Identities=29% Similarity=0.476 Sum_probs=62.9
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
|+.++|.|.+.|.|.| .|.|+++|..+.......... ...+.|.|.+++.+|+|.|+|.|.|..|...+.+.
T Consensus 1 G~~~~l~C~~~g~P~p-~i~W~~~g~~~~~~~~~~~~~-------~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd04978 1 GETGRLDCEAEGIPQP-TITWRLNGVPIEELPPDPRRR-------VDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAF 72 (76)
T ss_pred CCeEEEEEEceeeCCC-EEEEEECCEECCCCCCcceEE-------ccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEE
Confidence 7889999999999999 999999999887432221111 12378999999999999999999999999999999
Q ss_pred EEe
Q psy17146 723 LKP 725 (1011)
Q Consensus 723 l~V 725 (1011)
|.|
T Consensus 73 l~V 75 (76)
T cd04978 73 VHV 75 (76)
T ss_pred EEE
Confidence 886
No 53
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.33 E-value=7.6e-12 Score=105.32 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=64.7
Q ss_pred CcEEEEEEEEecCC-CCeEEEEECCeEeccc-CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 644 DTARVECSAFSIPP-PEKVTWSYRGEEIGVG-SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 644 ~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
+++.|.|.+.++|. +..|.|+|||++|... ...+|.+... ....+.|.|.+++..|+|+|+|.|+|.+++.++++
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~---~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a 77 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGG---QDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAA 77 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEecc---CCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEE
Confidence 46899999998663 3389999999999742 3445555321 01236899999999999999999999999999999
Q ss_pred EEEecCC
Q psy17146 722 MLKPQKS 728 (1011)
Q Consensus 722 ~l~V~~~ 728 (1011)
.|.|+.+
T Consensus 78 ~L~V~~p 84 (85)
T cd05853 78 DLIVRGP 84 (85)
T ss_pred EEEEecC
Confidence 9998643
No 54
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.32 E-value=1.2e-11 Score=102.46 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=58.4
Q ss_pred EEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 647 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 647 ~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
.|.|.+.|.|.| +|+|+|||++|..+......+.... .....+.|.|.++..+|+|.|+|+|+|.+|++++++.+.
T Consensus 2 ~i~~~v~G~P~P-ti~W~kng~~l~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKP-TLQWFHEGAILNESEYICTKIHVIN-NTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCC-ceEEEECCEECCCCcceeeeeEeec-ccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 478999999999 9999999999974221111221110 112357899999999999999999999999999988764
No 55
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.31 E-value=1.7e-11 Score=106.07 Aligned_cols=86 Identities=21% Similarity=0.277 Sum_probs=68.9
Q ss_pred CCeeec---CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 629 RPTIIS---HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 629 ~P~i~~---~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
.|.|.. +.++.+.+|+.++|.|.+.|. .| .|.|+|+|..+.. .++.+..+ ...|.|.+++++|+|.
T Consensus 1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p-~i~W~kng~~l~~---~~~~~~~~------~~~L~I~~v~~~D~G~ 69 (91)
T cd05740 1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-AT-YIWWVNNGSLLVP---PRLQLSND------NRTLTFNNVTRSDTGH 69 (91)
T ss_pred CCEeecccccCccccccCCcEEEEEEeCCC-CC-EEEEEECCEECCC---CCEEEeCC------CCEEEECcCChhhCEE
Confidence 366652 245689999999999999999 88 9999999998753 34444321 3589999999999999
Q ss_pred EEEEEEcCCCCe-EEEEEEEe
Q psy17146 706 YNCSVSNPYGSD-SVEIMLKP 725 (1011)
Q Consensus 706 Y~C~a~N~~G~~-~~~~~l~V 725 (1011)
|+|.|.|.+|.. +..+.|.|
T Consensus 70 Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 70 YQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEEEEcCCCCEEeeeEEEEe
Confidence 999999999974 55777776
No 56
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.31 E-value=8.6e-12 Score=102.50 Aligned_cols=69 Identities=17% Similarity=0.343 Sum_probs=58.4
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+.|.|.+.|.|.| .+.|+|||+++... .++... ..+|.|.++..+|+|.|+|.|.|.+|..+.++.+.+
T Consensus 1 ~~l~c~v~g~P~p-~v~W~k~g~~l~~~--~~~~~~--------~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPP-EIQWYKNGKLISEK--NRTKKS--------GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCC--CEEEcC--------CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 4799999999999 99999999998742 333221 368999999999999999999999999888887765
No 57
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.31 E-value=4.9e-11 Score=113.23 Aligned_cols=125 Identities=24% Similarity=0.367 Sum_probs=88.4
Q ss_pred EEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC-cEEEEE
Q psy17146 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP-AEITWI 169 (1011)
Q Consensus 91 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~ 169 (1011)
+|+|.+++.+|+|.|+|.+.+.. +..+..+.|+|..+|.. .+.. ......+|+.+.|.|.+.+.+|. ++|+|+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~----~~~~~~~~l~v~~~P~v-~~~~-~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~ 75 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPP----HQAQQIIQLSVSEPPRV-RLSL-EKLVSMIEEPQTLICHIAGYYPLDVQVEWT 75 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccC----cceeeEEEEEEecCCce-EEeC-CCceeecCCcEEEEEEECCCCCCCeEEEEE
Confidence 69999999999999999998753 33567788899876643 2222 23334478899999996655676 599999
Q ss_pred eCCceee------eceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 170 DGTGTVM------SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 170 k~~~~l~------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
|++.... .+.............+...+.|.|.....++.+.|+|.+.+....
T Consensus 76 ~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l~ 133 (139)
T cd05771 76 REPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSLE 133 (139)
T ss_pred ECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCCC
Confidence 9876421 122221122233346777789999888878889999999987553
No 58
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.30 E-value=1.5e-11 Score=108.26 Aligned_cols=88 Identities=19% Similarity=0.258 Sum_probs=65.6
Q ss_pred CeeeecCCCcEEEEEEccCC-CCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 141 DTLYTTEDREIELECISANG-KPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g-~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
..+.+.+|+++.|.|. +.| .|+|.+.|+||+..+............. +.....++|.|..++.+|+|.|+|.|.|..
T Consensus 11 ~~~~v~~G~~v~L~c~-v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~ 88 (101)
T cd04975 11 TTIFVNLGENLNLVVE-VEAYPPPPHINWTYDNRTLTNKLTEIVTSENE-SEYRYVSELKLVRLKESEAGTYTFLASNSD 88 (101)
T ss_pred ceEEEECCCCEEEEEE-EEecCCCCccEEEeCCeeCCCCcceeEEEecc-CcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence 4678889999999999 778 8999999999998886543322211110 112235789999999999999999999999
Q ss_pred CCceeEEEEEE
Q psy17146 220 DRTYKVARLKL 230 (1011)
Q Consensus 220 g~~~~s~~v~v 230 (1011)
|....+..+.|
T Consensus 89 G~~~~t~~L~V 99 (101)
T cd04975 89 ASKSLTFELYV 99 (101)
T ss_pred ccEEEEEEEEE
Confidence 97744444443
No 59
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.30 E-value=3.1e-11 Score=104.09 Aligned_cols=84 Identities=26% Similarity=0.474 Sum_probs=67.7
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEE-CCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSY-RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
.+.+..+..|+++.|.|.+.|.|. .++|++ +|..+. ...++.+.. .+..+.|.|.++..+|+|.|+|.|+|
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~--~v~W~k~~g~~~~--~~~r~~~~~----~g~~~~L~I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIV--SSQRVVVQK----EGVRSRLTIYNANIEDAGIYRCQATD 77 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC--eEEEEeCCCeEec--CCCCEEEEe----CCCeeEEEEecCChHHCEEEEEEEEc
Confidence 345667899999999999999885 699998 566765 345676654 34457999999999999999999999
Q ss_pred CCCCe-EEEEEEEe
Q psy17146 713 PYGSD-SVEIMLKP 725 (1011)
Q Consensus 713 ~~G~~-~~~~~l~V 725 (1011)
..|.. .+++.|.+
T Consensus 78 ~~G~~~~~~i~l~~ 91 (92)
T cd05866 78 AKGQTQEATVVLEI 91 (92)
T ss_pred CCCcEEEEEEEEEE
Confidence 99975 67777754
No 60
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.30 E-value=1.8e-11 Score=105.93 Aligned_cols=83 Identities=22% Similarity=0.297 Sum_probs=71.1
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----ecCCCcEEEeecCCCCCEEEEEEEEecCCCce
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 618 (1011)
||.+...|.+..+.+|+.+.|.|.+.|.|.|.++|+|++.... ...++.|.|.+++.+|+|.|+|.|.| ..|..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N-~~G~~ 79 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAEN-IKGKD 79 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEE-CCCcE
Confidence 3566777889999999999999999999999999999876442 23568999999999999999999999 67788
Q ss_pred eeEEEEEEc
Q psy17146 619 GAEATVYLK 627 (1011)
Q Consensus 619 s~~~~l~V~ 627 (1011)
+..+.|.|.
T Consensus 80 ~~~~~l~V~ 88 (88)
T cd04968 80 THQGRIYVQ 88 (88)
T ss_pred EEEEEEEEC
Confidence 888888773
No 61
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.30 E-value=2.2e-11 Score=106.30 Aligned_cols=73 Identities=30% Similarity=0.499 Sum_probs=58.3
Q ss_pred cCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC-CCCCEEEEEEEEcCCCCeE-E
Q psy17146 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR-HDHFGVYNCSVSNPYGSDS-V 719 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~d~G~Y~C~a~N~~G~~~-~ 719 (1011)
.|+.++|.|.+.|.|.| +|+|+|||..+......++.+.. +.|.|.++. .+|+|.|+|.|.|.+|+.. .
T Consensus 18 ~g~~v~l~C~~~G~P~P-~i~W~k~g~~l~~~~~~~~~~~~--------g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~ 88 (94)
T cd05848 18 DEKKVILNCEARGNPVP-TYRWLRNGTEIDTESDYRYSLID--------GNLIISNPSEVKDSGRYQCLATNSIGSILSR 88 (94)
T ss_pred CCCEEEEEEEeeecCCC-EEEEEECCeECccCCCceEEeeC--------CeEEEccCCccCcCEEEEEEEEcCCCeEEec
Confidence 47899999999999999 99999999998743333443322 579999885 6999999999999999773 4
Q ss_pred EEEE
Q psy17146 720 EIML 723 (1011)
Q Consensus 720 ~~~l 723 (1011)
.+.|
T Consensus 89 ~~~l 92 (94)
T cd05848 89 EALL 92 (94)
T ss_pred cEEE
Confidence 4444
No 62
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.29 E-value=1.6e-11 Score=102.06 Aligned_cols=72 Identities=26% Similarity=0.391 Sum_probs=60.4
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEEE
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLK 724 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~ 724 (1011)
++|.|.+.|.|.| .|+|+|++.++......++.... .+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus 1 a~l~C~~~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~-------~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~ 72 (74)
T cd05738 1 ATMLCAASGNPDP-EITWFKDFLPVDTTSNGRIKQLR-------SGALQIENSEESDQGKYECVATNSAGTRYSAPANLY 72 (74)
T ss_pred CEEEEEEeEecCC-EEEEEECCEECccCCCCCEEEcC-------CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence 4799999999999 99999999988754455665543 2579999999999999999999999974 6777777
Q ss_pred e
Q psy17146 725 P 725 (1011)
Q Consensus 725 V 725 (1011)
|
T Consensus 73 v 73 (74)
T cd05738 73 V 73 (74)
T ss_pred E
Confidence 6
No 63
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.29 E-value=2.1e-11 Score=102.66 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=59.3
Q ss_pred EEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCC-cCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 647 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP-LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 647 ~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
.|.|.+.|.|.| +|+|+|||+++.........+.... ......+.|.|.++..+|+|.|+|.|+|.+|++++.+.|.
T Consensus 2 ~i~~~v~G~P~P-~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKP-TLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCC-cEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 478999999999 9999999999975332111221110 1123457899999999999999999999999999988775
No 64
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.29 E-value=9.7e-06 Score=105.03 Aligned_cols=567 Identities=11% Similarity=0.111 Sum_probs=306.4
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeec
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSN 178 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~ 178 (1011)
....|.|+....-.+. .+..+....++|..+.....+.. ....+..+..+.++-....|.+ ..+.|..+++.....
T Consensus 1480 Y~~~GtYtVtLTvtN~--~Gsst~T~~VtV~~pV~~~tina-s~~~vpl~~sV~Fta~~s~Gs~-v~ysWdFGDg~ts~~ 1555 (2740)
T TIGR00864 1480 FNSPGDFNIRLAAANE--VGKNEATLNVAVKARVRGLTINA-SLTNVPLNGSVHFEAHLDAGDD-VRFSWILCDHCTPIF 1555 (2740)
T ss_pred cCCCceEEEEEEEECC--CCceEEEEEEEEeccccceEEcC-CCccccccceEEEEEEccCCCc-eeEEEEeCCCCcccc
Confidence 3467888887643221 12234556677776544333322 2333445667888865445554 489999876532110
Q ss_pred eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEE--EeCCCCceeEEEEEEEEEeCCc-eEEEec------------
Q psy17146 179 VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQA--QNTADRTYKVARLKLLVKYAPK-VQVSVI------------ 243 (1011)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a--~n~~g~~~~s~~v~v~v~~~P~-~~~~~~------------ 243 (1011)
.+.. ... +-...|.|+..+ .|..|....+. .+.|..+-. ..+...
T Consensus 1556 --------~npt-----~~y-----TY~spGtYtVtLTvtN~~Gs~~~T~--~i~V~~~I~GlqI~~~~~~gg~~~~~~~ 1615 (2740)
T TIGR00864 1556 --------GGNT-----IFY-----TFRSVGTFNIIVTAENDVGAAQASI--FLFVLQEIEGLQILGETAEGGGGGVQEL 1615 (2740)
T ss_pred --------CCCc-----eEE-----eecCCceEEEEEEEecCCCccceeE--EEEEeecccceEEEeecccccCCccccc
Confidence 0000 001 223468887655 46777664443 444432211 111111
Q ss_pred CcceeecCceEEEEEEcccCCCccEEEEEeCCc------ccCCccc--------cceEEEEeeecccCCcE-EEEEEE--
Q psy17146 244 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQ------PVPAAAS--------ATELYLTNITRHQHDSI-VKCEVQ-- 306 (1011)
Q Consensus 244 ~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~------~l~~~~~--------~~~l~i~~~~~~~~~~~-~~c~~~-- 306 (1011)
....+..+..+.|.-.+..+ ....+.|...+. ....... .+.+.+.-...+.-+.. -.+...
T Consensus 1616 ~~~~~~t~~~v~l~~~~~~G-TnvsysW~~~~~n~~dg~~~~~tGk~~~vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~ 1694 (2740)
T TIGR00864 1616 DGCYFETNHTVQFHAGFKDG-TNLSFSWNAILDNEPDGPAFAGSGKGAKLNPLEAGPCDIFLQAANLLGQATADCTIDFL 1694 (2740)
T ss_pred ccceeccCCEEEeeeccCCC-CeeEEEEEEecCCCCCCccccccCceeEEecCCCceEEEEEEEeecccceeeEEEEEEE
Confidence 01133345566666554443 347888866211 1111110 01111111111111110 000111
Q ss_pred -----EEee-CCcccccCCcEEEEEEeecCCCccEEEEEECCee-cCCCcCccEEEEeecccccCCcEEEEE--EEcCCc
Q psy17146 307 -----VSVI-GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQP-VPAAASATELYLTNITRHQHDSIVKCE--VHNDVG 377 (1011)
Q Consensus 307 -----~~~~-~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~-l~~~~~~~~L~I~~~~~~~d~G~Y~C~--a~n~~g 377 (1011)
+.+. ....+..|+.+.|.-....... +.++|..++.. ... ....+ -.. . ...|.|... |.|..|
T Consensus 1695 epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~-vty~W~~gdG~s~~~--s~p~~-tHt--f-~~~G~y~VtVta~N~vs 1767 (2740)
T TIGR00864 1695 EPAGNLMLQASDNPAAVNALINLSAELAEGSG-LQYRWFLEEGDDLET--SEPFM-SHS--F-PSAGLHLVTMKAFNELG 1767 (2740)
T ss_pred EEcCceEEeccCCcccCCCeEEEEEEecCCCC-cEEEEEECCCCCccc--CCCce-EEE--c-cCCceEEEEEEEEcccc
Confidence 1111 3456677889998876565554 59999866532 111 11100 111 1 146888765 568998
Q ss_pred cceeeEEEEEEecce---EeeC-CCce-EecCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEE
Q psy17146 378 KSEDSETLDVTYGPR---FRAR-PYSV-QVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRY 452 (1011)
Q Consensus 378 ~~~~s~~l~V~~~P~---~~~~-p~~~-~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y 452 (1011)
....+..+.|..+.. |... +... .+..|..+.|.-.+.---...+.|..++.....+ .=...+..++|.|
T Consensus 1768 s~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~g-----k~v~~Tf~~aG~y 1842 (2740)
T TIGR00864 1768 SANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMG-----KHACMTFPDAGTF 1842 (2740)
T ss_pred ccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCcccc-----ceeEEecCCCeEE
Confidence 888888888877543 2221 1111 4556888888877643334478888875432211 1112567899999
Q ss_pred EEEEE--EcCCcceeeEEEEEEcCCCee--eccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCe-Eeec--c------
Q psy17146 453 YCKAS--VMGFPEVGAEATVYLKGRPTI--ISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE-EIGV--G------ 519 (1011)
Q Consensus 453 ~C~a~--n~~~~~~s~~~~v~v~~~p~~--~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-~i~~--~------ 519 (1011)
+.... |.. ...+....+.|..+..- ..........|+.++|.+....+.. .++.|...+. .... +
T Consensus 1843 tV~L~AsN~v-s~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~-Vtf~w~fGdgs~~~~t~~~t~~Hs 1920 (2740)
T TIGR00864 1843 AIRLNASNAV-SGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSA-VNFRLQIGGAAPEVLQPGPRFSHS 1920 (2740)
T ss_pred EEEEEEEccc-CcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCc-eEEEEEeCCCCceeecCCCeEEee
Confidence 87765 533 22334444555555433 3334557778999999999988884 5899987643 2211 1
Q ss_pred --CCCceE----EEcCCCCCcccEEEEEEecceee-cCCc-eEEEcCCCcEEEEEEEecCCCCeEEEEec-----CCcee
Q psy17146 520 --SSDDYS----VHNDVGKSEDSETLDVTYGPRFR-ARPY-SVQVDRGAGVNLLCDVDGNPAPEITWIHE-----DSDKV 586 (1011)
Q Consensus 520 --~~~~y~----~~n~~G~~~~~~~l~V~~~P~~~-~~p~-~~~v~~G~~~~l~C~~~g~p~p~v~W~k~-----~~~~~ 586 (1011)
..|.|. +.|.++.......+.|..+-.-. .... ...+..|+..+|.-.+....+-.+.|+.+ |....
T Consensus 1921 Y~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~ 2000 (2740)
T TIGR00864 1921 FPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLV 2000 (2740)
T ss_pred cCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcce
Confidence 234553 68999998888888776552221 1111 11268899999999886666667899855 33333
Q ss_pred ecCCCcEEEeecCCCCCEEEEEEE--EecCCCceeeEEEEEEcCCCeee--cCCceeeecCCcEEEEEEEEecCCCCeEE
Q psy17146 587 VGNSPNLTLLMTSDDLAGRYYCKA--SVMGFPEVGAEATVYLKGRPTII--SHRTQFGIPGDTARVECSAFSIPPPEKVT 662 (1011)
Q Consensus 587 ~~~~~~L~I~~v~~~d~G~Y~C~a--~n~~~~~~s~~~~l~V~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p~~v~ 662 (1011)
...+...+. .....|.|...+ .| ..+..+....+.|+.+.... .........+..++|.|.+...+..+.+.
T Consensus 2001 ~~~G~~vty---~~~~~G~~~I~v~A~N-~l~s~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~ 2076 (2740)
T TIGR00864 2001 IHMGKDVSY---TAEAAGLLEIQLGAFN-ALGAENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACH 2076 (2740)
T ss_pred eecCCceEE---ccCCCcEEEEEEEEEc-ccCcccccEEEEEEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEE
Confidence 333333333 235789997665 46 45666667777777665432 21233455688999999987666545899
Q ss_pred EEEC-CeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE--EEEcCCCCeEEEEEEEec
Q psy17146 663 WSYR-GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC--SVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 663 W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C--~a~N~~G~~~~~~~l~V~ 726 (1011)
|-+. |......+..+.. - .-...|.|.. .|.|......+.++|.|.
T Consensus 2077 WDFGDGt~~~~T~~~~~s-------------H-----tY~r~G~Y~V~V~a~N~VS~~~a~~~i~V~ 2125 (2740)
T TIGR00864 2077 WDFGDGSAGQDTDEPRAE-------------H-----EYLHPGDYRVQVNASNLVSFFSAHAEINVQ 2125 (2740)
T ss_pred EEecCCCCccccCCceeE-------------E-----EecCCccEEEEEEEEcceeeeeeEEEEEEE
Confidence 9886 4443321111111 1 1123477776 467998876666666664
No 65
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.29 E-value=1.9e-11 Score=102.89 Aligned_cols=74 Identities=27% Similarity=0.416 Sum_probs=61.5
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
|++++|.|.+.|.|.| .|+|++++..+. ...++.+.. .+..+.|.|.++..+|+|.|+|.|.|.+|.......
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~~~~~~~~--~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 73 (78)
T cd05743 1 GETVEFTCVATGVPTP-IINWRLNWGHVP--DSARVSITS----EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD 73 (78)
T ss_pred CCEEEEEEEEEEecCC-EEEEEECCeECC--CCCCEEEEE----CCCEEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence 7889999999999999 999999998876 345565544 233578999999999999999999999998765554
Q ss_pred E
Q psy17146 723 L 723 (1011)
Q Consensus 723 l 723 (1011)
+
T Consensus 74 ~ 74 (78)
T cd05743 74 G 74 (78)
T ss_pred E
Confidence 4
No 66
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.29 E-value=1.7e-11 Score=102.75 Aligned_cols=73 Identities=29% Similarity=0.527 Sum_probs=58.5
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe--EEEEEE
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD--SVEIML 723 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~--~~~~~l 723 (1011)
++|.|.+.|.|.| .|+|+|+|.++... ..++.+... ...|.|.++..+|+|.|.|.|.|.+|.. ++.++|
T Consensus 1 v~L~C~~~g~P~p-~v~W~k~g~~l~~~-~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRP-TYQWFRDGTPLSDG-QGNYSVSSK------ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCC-cEEEEECCEECCCC-CccEEEeCC------CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 5799999999999 99999999998642 334444332 3589999999999999999999999976 456666
Q ss_pred Eec
Q psy17146 724 KPQ 726 (1011)
Q Consensus 724 ~V~ 726 (1011)
.|.
T Consensus 73 ~v~ 75 (77)
T cd05760 73 SII 75 (77)
T ss_pred EEe
Confidence 553
No 67
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.29 E-value=2.4e-11 Score=106.03 Aligned_cols=89 Identities=30% Similarity=0.453 Sum_probs=73.8
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
|.|...|.++.+.+|++++|.|.+.+ +.+.+.|++++..+.. ..++.+.... +.++|+|.+++.+|+|.|+
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~------~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~ 72 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS------SQRYQIESDG--GSSSLTIKNVTREDAGTYT 72 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES------SSSEEEEEET--TEEEEEESSESGGGSEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceee------eeeeeeeccc--ceeEEccCCCChhhCEEEE
Confidence 67999999999999999999999997 6779999999987743 4566666554 7789999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEE
Q psy17146 107 CQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
|.+.+.. +..+..+.|+|
T Consensus 73 C~~~n~~----g~~~~~~~l~V 90 (90)
T PF07679_consen 73 CVASNSS----GEATASVNLTV 90 (90)
T ss_dssp EEEEETT----EEEEEEEEEEE
T ss_pred EEEEECC----CEEEEEEEEEC
Confidence 9999963 34555566654
No 68
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.28 E-value=1.4e-11 Score=101.48 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=58.5
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+.|.|.+.|.|.| .+.|+|++..+... +..... ...+|.|.+++.+|+|.|+|.|.|.+|.++.++.|.|
T Consensus 1 ~~L~C~~~G~P~P-~v~W~k~~~~~~~~---~~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTP-EVHWDRIDGPLSPN---RTKKLN------NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCcCCCCC---ceeEEc------CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4799999999999 99999999877531 222211 2469999999999999999999999999999999887
No 69
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.28 E-value=1.8e-11 Score=103.15 Aligned_cols=78 Identities=21% Similarity=0.440 Sum_probs=65.5
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
....+.+|+.++|.|.+.+. .+ .+.|+|||.++.. ..++.+.. ..|.|.+++.+|+|.|+|.|.|..|
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~-~v~W~k~g~~l~~--~~~~~~~~--------~~L~I~~~~~~DsG~Y~C~a~n~~g 69 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQ-SINWTKDGVQLGE--NNRTRITG--------EEVQIKDAVPRDSGLYACVTSSPSG 69 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-Cc-eEEEeeCCcCCCC--CceEEEeC--------CEEEECCCChhhCEEEEEEEeCCCC
Confidence 45668899999999999996 56 7999999999863 34555532 4799999999999999999999999
Q ss_pred CeEEEEEEEe
Q psy17146 716 SDSVEIMLKP 725 (1011)
Q Consensus 716 ~~~~~~~l~V 725 (1011)
+....+.|.|
T Consensus 70 ~~~~~~~v~V 79 (79)
T cd04973 70 SDTTYFSVNV 79 (79)
T ss_pred cccEEEEEeC
Confidence 9888887764
No 70
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.28 E-value=2.1e-11 Score=105.00 Aligned_cols=81 Identities=26% Similarity=0.418 Sum_probs=66.0
Q ss_pred eeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC-CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 638 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS-DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
..+.+|+.+.|.|.+.|.|.| .++|+|+|..+..... ..+.+.. ....|.|.++..+|+|.|+|.|.|.+|+
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~------~~~~l~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTP-TMRWLKNGKEFKQEHRIGGYKVRN------QHWSLIMESVVPSDKGNYTCVVENEYGS 76 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCC-EEEEEECCEECCCCCceeeeEEeC------CceEEEEccCCcccCEEEEEEEEeCCCE
Confidence 347789999999999999999 9999999999874221 1122211 1357999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy17146 717 DSVEIMLKP 725 (1011)
Q Consensus 717 ~~~~~~l~V 725 (1011)
.+.++.|.|
T Consensus 77 ~~~~~~l~v 85 (85)
T cd05857 77 INHTYHLDV 85 (85)
T ss_pred EEEEEEEEC
Confidence 999998875
No 71
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.28 E-value=2.1e-11 Score=99.29 Aligned_cols=68 Identities=24% Similarity=0.432 Sum_probs=56.0
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
|+.++|.|.+.|.|.| .|+|+|+|.++.. ..++.. ....|.|.++. |+|.|+|.|.|.+|..++++.
T Consensus 1 G~~v~L~C~a~G~P~P-~v~W~k~g~~l~~--~~~~~~--------~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~ 67 (69)
T cd05739 1 GGSVNLTCVAVGAPMP-YVKWMKGGEELTK--EDEMPV--------GRNVLELTNIY--ESANYTCVAISSLGMIEATAQ 67 (69)
T ss_pred CCeEEEEEEeeecCCC-EEEEEECCEECCC--ccceec--------CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEE
Confidence 6889999999999999 9999999998753 223222 12579999974 799999999999999988887
Q ss_pred E
Q psy17146 723 L 723 (1011)
Q Consensus 723 l 723 (1011)
|
T Consensus 68 l 68 (69)
T cd05739 68 V 68 (69)
T ss_pred E
Confidence 6
No 72
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.28 E-value=5.3e-11 Score=113.01 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=86.5
Q ss_pred CcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecC-CceeeecCCcEEEEEEEEec-CCCCeEEEEECCe
Q psy17146 591 PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGE 668 (1011)
Q Consensus 591 ~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~-~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~ 668 (1011)
.+|+|.+++.+|+|.|+|.+.+ ..+.....+.|.|..+|.+... .......|+.++|.|.+.|. |.+.+|+|+++|.
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~ 79 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVST-PPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP 79 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEc-cCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence 3699999999999999999998 5677888999999999998743 33334478999999999997 5435899999986
Q ss_pred Eecc----cCCC---CeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 669 EIGV----GSSD---DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 669 ~l~~----~~~~---~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
.... .... ......+ ......+.|.|......+...|+|.|.+..-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d-gt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 80 GDSPPPVSLSNVSFSSHRQHQD-GTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CCccceeccCCeEecceEeCCC-CCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 5221 0010 0111110 0011246788876666667799999987654
No 73
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.28 E-value=2.6e-11 Score=101.75 Aligned_cols=75 Identities=29% Similarity=0.466 Sum_probs=63.7
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+.|.|.+.|.|.| .+.|+|++..+......++.+..+ ...|.|.++..+|.|.|+|.|.|.+|.++..+.|.|
T Consensus 1 ~~L~C~v~g~P~p-~v~W~k~~~~l~~~~~~~~~~~~~------~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLP-RLTWLKNGMDITPKLSKQLTLIAN------GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeEeeecCCC-EEEEEECCEECCCCCCccEEEeCC------CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 4699999999999 999999999987544445554332 357999999999999999999999999999999988
Q ss_pred cC
Q psy17146 726 QK 727 (1011)
Q Consensus 726 ~~ 727 (1011)
++
T Consensus 74 ~~ 75 (76)
T cd05736 74 ED 75 (76)
T ss_pred Ec
Confidence 64
No 74
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.27 E-value=1.9e-11 Score=99.48 Aligned_cols=68 Identities=21% Similarity=0.409 Sum_probs=56.5
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+.|.|.+.|.|.| .++|+|||+++.. ..+ +.. ...|.|.++..+|+|.|+|.|.|.+|..+...++.+
T Consensus 1 ~~~~c~v~G~P~P-~v~W~k~g~~l~~--~~~--~~~-------~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPP-EVKWYKNGQLIVL--NHT--FKR-------GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCC--CCE--Ecc-------CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 4799999999999 9999999999863 222 211 257999999999999999999999998877776654
No 75
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.27 E-value=5.7e-11 Score=103.82 Aligned_cols=81 Identities=22% Similarity=0.430 Sum_probs=62.2
Q ss_pred cCCceeeec---CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC-CCCCEEEEEE
Q psy17146 634 SHRTQFGIP---GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR-HDHFGVYNCS 709 (1011)
Q Consensus 634 ~~~~~~v~~---G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~d~G~Y~C~ 709 (1011)
.+.+..+.+ |++++|.|.+.|.|.| .|+|++||..+......++.+.. +.|.|.++. ..|+|.|+|.
T Consensus 7 ~P~~~~~~~~~~g~~v~l~C~a~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~--------g~L~I~~~~~~~D~G~Y~C~ 77 (94)
T cd05850 7 QPSSLLFPEGSPEEKVTLGCRARASPPA-TYRWKMNGTEIKFAPESRYTLVA--------GNLVINNPQKARDAGSYQCL 77 (94)
T ss_pred CCCCEEecCCCCCCeEEEEeEceeCCCC-EEEEEECCEECccCCCceEEEEC--------CeEEEccCCccCcCEEEEEE
Confidence 344444434 4689999999999999 99999999998754445555532 579998865 5999999999
Q ss_pred EEcCCCCeE-EEEEE
Q psy17146 710 VSNPYGSDS-VEIML 723 (1011)
Q Consensus 710 a~N~~G~~~-~~~~l 723 (1011)
|+|.+|+.. ..+.|
T Consensus 78 A~N~~G~~~s~~a~l 92 (94)
T cd05850 78 AINRCGTVVSREANL 92 (94)
T ss_pred EEcCcCcEEEEEEEE
Confidence 999999764 45555
No 76
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.26 E-value=2.2e-11 Score=97.66 Aligned_cols=66 Identities=20% Similarity=0.369 Sum_probs=58.9
Q ss_pred EEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEE
Q psy17146 321 VRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388 (1011)
Q Consensus 321 v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 388 (1011)
++|.|.+.|.|.| .+.|||||+++........|.|.++..+ |+|.|+|.|+|..|..+.+..+.|.
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~~~~~~L~i~~v~~~-D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPP-EFQWYKDGKLISGKHSQHSLQIKDVTEA-SAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCC-EEEEEECCEECcccCCcCEEEECCCCHH-HCEEEEEEEEECCccEEEEEEEEEE
Confidence 4799999999998 9999999999976667789999999998 9999999999999988777777664
No 77
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.26 E-value=3.9e-11 Score=107.18 Aligned_cols=92 Identities=25% Similarity=0.393 Sum_probs=67.3
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccC---CCCeEEecCCcCccceeEEEE--cCCCCCC
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS---SDDYSVLEDPLKEGIKSTLII--RESRHDH 702 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~---~~~~~~~~~~~~~~~~~~L~I--~~~~~~d 702 (1011)
||.|. .+.+..+.+|+.++|.|.+.|.|.| .+.|+|+|..+.... ..+..+.. .+....+.| ..+..+|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~D 75 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTP-TIQWLKNGQPLETDKDDPRSHRIVLP----SGSLFFLRVVHGRKGRSD 75 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCC-EEEEEECCEECccccCCCCcceEEec----CCcEEEEEeeccCCCcCc
Confidence 46666 4567889999999999999999999 999999999987521 11222221 222223333 3346899
Q ss_pred CEEEEEEEEcCCCC-eEEEEEEEe
Q psy17146 703 FGVYNCSVSNPYGS-DSVEIMLKP 725 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G~-~~~~~~l~V 725 (1011)
+|.|+|.|+|.+|. .+..+.|.|
T Consensus 76 ~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 76 EGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CEEEEEEEEccccceecceEEEEe
Confidence 99999999999998 677877765
No 78
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.26 E-value=2.4e-11 Score=105.62 Aligned_cols=78 Identities=27% Similarity=0.436 Sum_probs=64.8
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecc------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGV------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
|++++|.|.+.|.|.| .+.|+|+|..+.. ....++.+.. .+.|+|.+++.+|+|.|+|.|.|.+|+
T Consensus 1 G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~~~~~~~~r~~v~~-------~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 72 (90)
T cd05726 1 GRTVTFQCEATGNPQP-AIFWQKEGSQNLLFSYQPPQSSSRFSVSQ-------TGDLTITNVQRSDVGYYICQTLNVAGS 72 (90)
T ss_pred CCEEEEEEECCccCCC-EEEEEeCCCcceeecccCCCCCCeEEECC-------CCeEEEeeCChhhCEEEEEEEEcCCCc
Confidence 7889999999999999 9999999875421 1234555543 257999999999999999999999999
Q ss_pred eEEEEEEEecCC
Q psy17146 717 DSVEIMLKPQKS 728 (1011)
Q Consensus 717 ~~~~~~l~V~~~ 728 (1011)
....+.|.|.+.
T Consensus 73 ~~~~~~l~V~~~ 84 (90)
T cd05726 73 ILTKAYLEVTDV 84 (90)
T ss_pred eEEEEEEEEeec
Confidence 999999999754
No 79
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.25 E-value=2.4e-11 Score=99.62 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=59.0
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
++|.|.+.|.|.| .+.|+|++..+. ..++.+.. ...|.|.+++.+|+|.|+|.|.|..|.++.++.|.|
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~~~---~~~~~~~~-------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVP-TVLWRKEDGELP---KGRAEILD-------DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCC-EEEEEECCccCC---CCcEEEee-------CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 4799999999999 999999987764 34555543 258999999999999999999999999999988865
No 80
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.25 E-value=2.9e-11 Score=104.87 Aligned_cols=82 Identities=21% Similarity=0.383 Sum_probs=60.6
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECC----eEecccCCCCeEEecCC---cCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRG----EEIGVGSSDDYSVLEDP---LKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g----~~l~~~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
|+.++|.|.+.|.|.| +|+|+|++ ..+.............. ...+....|.|.++..+|+|.|+|.|.|.+|
T Consensus 1 G~~v~l~C~v~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCC-eEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 6789999999999999 99999964 33332122222222110 0112245899999999999999999999999
Q ss_pred CeEEEEEEEe
Q psy17146 716 SDSVEIMLKP 725 (1011)
Q Consensus 716 ~~~~~~~l~V 725 (1011)
...+++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 9999999987
No 81
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.25 E-value=5e-11 Score=104.87 Aligned_cols=84 Identities=26% Similarity=0.445 Sum_probs=66.0
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCC-----CCCCCEEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRES-----RHDHFGVYNC 708 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~-----~~~d~G~Y~C 708 (1011)
.|.+..+.+|+++.|.|.+.|.|.| .++|+|||..+......++.+..+ +.|.|.++ .++|.|.|+|
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~-------~~l~i~~v~~~~~~~~D~G~Y~C 76 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEPPP-KIEWKKDGVLLNLVSDERRQQLPN-------GSLLITSVVHSKHNKPDEGFYQC 76 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCCCC-EEEEEECCeECccccCcceEEccC-------CeEEEeeeeccCCCCCcCEEEEE
Confidence 4556778899999999999999999 999999999987543333444332 45666665 6899999999
Q ss_pred EEEcC-CCCe-EEEEEEEe
Q psy17146 709 SVSNP-YGSD-SVEIMLKP 725 (1011)
Q Consensus 709 ~a~N~-~G~~-~~~~~l~V 725 (1011)
.|.|. .|.. +..+.|.|
T Consensus 77 ~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 77 VAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EEECCccCcEEEeeeEEeC
Confidence 99999 9976 66777754
No 82
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.24 E-value=4.9e-11 Score=104.07 Aligned_cols=79 Identities=13% Similarity=0.262 Sum_probs=63.3
Q ss_pred CeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 141 DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+.+.+.+|+.+.|.|. +.|.|.|++.|+|++..+....++......+. .+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 9 ~~v~v~~G~~v~L~C~-v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 9 DVVTIMEGKTLNLTCT-VFGDPDPEVSWLKNDQALALSDHYNVKVEQGK-----YASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred ceEEEeCCCcEEEEEE-EEecCCCeEEEEECCEECccCCCEEEEEcCCC-----EEEEEEccCChhhCEEEEEEEEECCC
Confidence 3677889999999999 78999999999999988766555443322221 25799999999999999999999999
Q ss_pred CceeE
Q psy17146 221 RTYKV 225 (1011)
Q Consensus 221 ~~~~s 225 (1011)
.....
T Consensus 83 ~~~~~ 87 (92)
T cd05737 83 GETVD 87 (92)
T ss_pred cceEE
Confidence 87433
No 83
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.24 E-value=3.2e-11 Score=100.41 Aligned_cols=68 Identities=26% Similarity=0.436 Sum_probs=59.1
Q ss_pred CCCcEEEEEEEecCCCCeEEEEecCCce------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 558 RGAGVNLLCDVDGNPAPEITWIHEDSDK------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 558 ~G~~~~l~C~~~g~p~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
+|+.+.|.|.+.|.|.|.++|+|++..+ .....++|+|.++..+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N-~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVN-IVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEe-CCCceeEEEEEeC
Confidence 6899999999999999999999998543 234567999999999999999999999 6788888888765
No 84
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.24 E-value=4.8e-11 Score=99.52 Aligned_cols=73 Identities=27% Similarity=0.450 Sum_probs=60.6
Q ss_pred CCcEEEEEEEEecCCCCeEEEEE-CCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSY-RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
|+.+.|.|.+.|.|.| .+.|++ ++..+. ...++.+.. .++|.|.++..+|+|.|+|.|.|..|.+++.+
T Consensus 1 G~~~~l~C~~~g~P~p-~v~W~~~~~~~~~--~~~~~~~~~-------~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 70 (74)
T cd05764 1 GQRATLRCKARGDPEP-AIHWISPDGKLIS--NSSRTLVYD-------NGTLDILITTVKDTGSFTCIASNAAGEATATV 70 (74)
T ss_pred CCeEEEEEEccCcCCC-EEEEEeCCCEEec--CCCeEEEec-------CCEEEEEECChhhCEEEEEEEECCCCeEEEEE
Confidence 7889999999999999 999997 566654 333444433 25899999999999999999999999999998
Q ss_pred EEEe
Q psy17146 722 MLKP 725 (1011)
Q Consensus 722 ~l~V 725 (1011)
.|.|
T Consensus 71 ~l~v 74 (74)
T cd05764 71 ELHI 74 (74)
T ss_pred EEEC
Confidence 8865
No 85
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.24 E-value=5.4e-11 Score=102.73 Aligned_cols=81 Identities=26% Similarity=0.512 Sum_probs=66.1
Q ss_pred CCceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 635 HRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
+.+..+.+|+++.|.|.+ .|.|.| .+.|+|+|..+... ..++.+.. .+.|.|.+++.+|+|.|+|.|.|.
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p-~i~W~k~g~~~~~~-~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~a~N~ 73 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEP-TVSWRKDGQPLNLD-NERVRIVD-------DGNLLIAEARKSDEGTYKCVATNM 73 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCC-EEEEEECCEECCCC-CCCEEEcc-------CCEEEEeECCcccCEEEEEEEEec
Confidence 456678899999999998 789999 99999999998752 34455433 258999999999999999999999
Q ss_pred CCCe-EEEEEEE
Q psy17146 714 YGSD-SVEIMLK 724 (1011)
Q Consensus 714 ~G~~-~~~~~l~ 724 (1011)
.|.. +..+.|.
T Consensus 74 ~G~~~s~~~~l~ 85 (86)
T cd05724 74 VGERESAAARLS 85 (86)
T ss_pred cCceeeeeEEEE
Confidence 9975 4555554
No 86
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.24 E-value=3.2e-11 Score=106.36 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=65.7
Q ss_pred eeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
...+..|+.+.|.|. +.|+|+|+++|+||+..+..+.........+.......++|.|.+++.+|+|.|+|.|.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~-v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVE-VEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEE-EEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 455677999999999 8899999999999999887644322111111111223468999999999999999999999998
Q ss_pred ceeEEEEEEE
Q psy17146 222 TYKVARLKLL 231 (1011)
Q Consensus 222 ~~~s~~v~v~ 231 (1011)
...+..+.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 7555555443
No 87
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.23 E-value=5.8e-11 Score=101.65 Aligned_cols=81 Identities=21% Similarity=0.344 Sum_probs=64.0
Q ss_pred eeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeec-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSN-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
.+.+.+|+.+.|.|. +.|.|.|.++|+|++..+... .++......+ .+.|.|.++..+|+|.|+|.|.|..|
T Consensus 4 ~~~v~~G~~v~l~c~-~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~------~~~L~I~~~~~~D~G~Y~c~a~N~~G 76 (86)
T cd05894 4 TIVVVAGNKLRLDVP-ISGEPAPTVTWSRGDKAFTETEGRVRVESYKD------LSSFVIEGAEREDEGVYTITVTNPVG 76 (86)
T ss_pred EEEEEcCCEEEEEee-EeecCCCeEEEEECCEECccCCCeEEEEEcCC------eEEEEECCCccCcCEEEEEEEEeCCC
Confidence 567889999999999 789999999999999887543 2343222222 36899999999999999999999999
Q ss_pred CceeEEEEEEE
Q psy17146 221 RTYKVARLKLL 231 (1011)
Q Consensus 221 ~~~~s~~v~v~ 231 (1011)
.. ++.+.|.
T Consensus 77 ~~--~~~~~l~ 85 (86)
T cd05894 77 ED--HASLFVK 85 (86)
T ss_pred cE--EEEEEEE
Confidence 86 4444443
No 88
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.23 E-value=3.5e-11 Score=100.55 Aligned_cols=73 Identities=27% Similarity=0.506 Sum_probs=58.8
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecc-cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGV-GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~-~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
++|.|.+.|.|.| +|+|+|+|..... ....++.+... .+.|.|.+++.+|+|.|+|.|.|..|..+..+.|.
T Consensus 1 a~l~C~~~G~P~P-~v~W~k~~~~~~~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 1 ARLECAATGHPTP-QIAWQKDGGTDFPAARERRMHVMPE------DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred CEeEeecccccCC-EEEEEeCCCccCCcccccceEEecC------CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence 4799999999999 9999999875322 22334444321 25899999999999999999999999999999988
Q ss_pred e
Q psy17146 725 P 725 (1011)
Q Consensus 725 V 725 (1011)
|
T Consensus 74 V 74 (75)
T cd05763 74 V 74 (75)
T ss_pred E
Confidence 6
No 89
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.23 E-value=4.8e-11 Score=102.30 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=68.4
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeE
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 621 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 621 (1011)
|...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+. ...++.|.|.++..+|+|.|+|.|.| ..|.....
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N-~~G~~~~~ 80 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAEN-KHGTIYAS 80 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEEC-CCCeEEEE
Confidence 5667889999999999999999999999999999986432 23457899999999999999999999 67888888
Q ss_pred EEEEE
Q psy17146 622 ATVYL 626 (1011)
Q Consensus 622 ~~l~V 626 (1011)
+.|.|
T Consensus 81 ~~l~V 85 (85)
T cd05728 81 AELAV 85 (85)
T ss_pred EEEEC
Confidence 87765
No 90
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.22 E-value=6.2e-11 Score=102.94 Aligned_cols=82 Identities=22% Similarity=0.406 Sum_probs=61.4
Q ss_pred CCcEEEEEEEEecCCCCeEEEEEC----CeEecccCCCCeEEecCC---cCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYR----GEEIGVGSSDDYSVLEDP---LKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~----g~~l~~~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
|+.++|.|.+.|.|.| .|+|+|+ |..+.........+.... ......+.|.|.+++.+|+|.|+|.|.|.+|
T Consensus 1 G~~v~L~C~~~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQP-HIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCC-EEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 6889999999999999 9999984 555542222222222110 0112246899999999999999999999999
Q ss_pred CeEEEEEEEe
Q psy17146 716 SDSVEIMLKP 725 (1011)
Q Consensus 716 ~~~~~~~l~V 725 (1011)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9999999876
No 91
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.22 E-value=3.8e-11 Score=99.29 Aligned_cols=73 Identities=26% Similarity=0.383 Sum_probs=57.1
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeee-ceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMS-NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~-~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~ 229 (1011)
+.|+|. +.|.|.|.++|+|++..+.. +.++.......+ ..+|.|.+++.+|+|.|+|.|.|..|.+..++.+.
T Consensus 1 v~l~C~-v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g-----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 1 VKLECQ-ISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSG-----RVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred CEEEEE-EEecCCCeEEEEECCEECcCCCCeEEEEEcCCC-----cEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 479999 78999999999999888764 344443333333 14799999999999999999999999886555544
No 92
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.22 E-value=7.9e-11 Score=101.13 Aligned_cols=81 Identities=23% Similarity=0.414 Sum_probs=63.3
Q ss_pred CcEEEEEEEEecCCC-CeEEEEECCeEecccC-CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 644 DTARVECSAFSIPPP-EKVTWSYRGEEIGVGS-SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 644 ~~v~L~C~~~g~p~p-~~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
++++|.|.+.|.|.| +.+.|+++|.++.... ..++..... ....+.|.|.+++.+|+|.|+|.|.|.+|..++++
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 77 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGG---KDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASA 77 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEec---ccccceEEEccCCHHhCeeeEEEEecCCCcEEEEE
Confidence 468999999999986 2579999999987432 222322111 12247899999999999999999999999999999
Q ss_pred EEEecC
Q psy17146 722 MLKPQK 727 (1011)
Q Consensus 722 ~l~V~~ 727 (1011)
.|.|..
T Consensus 78 ~l~V~~ 83 (85)
T cd04970 78 DLIVRG 83 (85)
T ss_pred EEEEEC
Confidence 999864
No 93
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.22 E-value=6.5e-11 Score=104.71 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=65.1
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--e-----------ee---cCCCcEEEeecCCCCCEEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--K-----------VV---GNSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--~-----------~~---~~~~~L~I~~v~~~d~G~Y~ 607 (1011)
+|.|.. +.+..+.+|++++|.|.+.|.|.|.+.|+|+... + .. ...++|+|.+++.+|+|.|+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 466654 6789999999999999999999999999995321 1 11 12358999999999999999
Q ss_pred EEEEecCCCceeeEEEEEE
Q psy17146 608 CKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 608 C~a~n~~~~~~s~~~~l~V 626 (1011)
|.|.| ..|....++.|.|
T Consensus 81 C~A~N-~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAAS-RIGGHQKSMYLDI 98 (98)
T ss_pred EEEec-cCCcceeEEEEeC
Confidence 99999 6777777777754
No 94
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.22 E-value=1.3e-10 Score=101.14 Aligned_cols=84 Identities=21% Similarity=0.436 Sum_probs=65.5
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEE-CCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSY-RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
+.+..+..|+++.|.|.+.|.| + .++|++ +|..+.. ..++.+..+ ....++|+|.+++.+|+|.|+|.|.|.
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p-~-~i~W~~~~~~~~~~--~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 79 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEP-K-DISWFSPNGEKLVT--QQQISVVQN---DDVRSTLTIYNANIEDAGIYKCVATDA 79 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeC-C-eEEEECCCCCEecc--CCCEEEEeC---CCCEEEEEEecCCcccCEEEEEEEEcC
Confidence 4556789999999999999996 5 899998 6766653 334444332 344679999999999999999999999
Q ss_pred CC-CeEEEEEEEe
Q psy17146 714 YG-SDSVEIMLKP 725 (1011)
Q Consensus 714 ~G-~~~~~~~l~V 725 (1011)
+| ..++++.|.|
T Consensus 80 ~g~~~~~sv~l~~ 92 (92)
T cd04977 80 KGTESEATVNLKI 92 (92)
T ss_pred CCCcceeEEEEEC
Confidence 76 5677777754
No 95
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.21 E-value=5.6e-11 Score=101.64 Aligned_cols=78 Identities=23% Similarity=0.348 Sum_probs=63.8
Q ss_pred eeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 639 FGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
....|+.++|.|.+.|.|.| .+.|+|+|..+..... ... ......|.|.++..+|+|.|+|.|.|..|..+
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p-~i~W~k~~~~~~~~~~--~~~------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 75 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRP-DITWLKDNKPLTPTEI--GES------RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEIN 75 (82)
T ss_pred eccCCCeEEEEEEeeEeCCC-cEEEEECCcCCcCCcc--cee------cCceEEEEEccCChhhCEEEEEEEEcCCccEE
Confidence 45679999999999999999 8999999988763211 111 11246899999999999999999999999999
Q ss_pred EEEEEEe
Q psy17146 719 VEIMLKP 725 (1011)
Q Consensus 719 ~~~~l~V 725 (1011)
+.+.|.|
T Consensus 76 ~~~~v~v 82 (82)
T cd05856 76 ATYKVDV 82 (82)
T ss_pred EEEEEeC
Confidence 8888764
No 96
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.21 E-value=1e-10 Score=101.69 Aligned_cols=71 Identities=32% Similarity=0.529 Sum_probs=57.0
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC-CCCCEEEEEEEEcCCCCe-EEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR-HDHFGVYNCSVSNPYGSD-SVE 720 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~d~G~Y~C~a~N~~G~~-~~~ 720 (1011)
|..+.|.|.+.|.|.| .|+|+|++..+.. ...++.+. .+.|.|.++. .+|+|.|+|.|+|.+|.. +..
T Consensus 19 ~~~v~l~C~a~G~P~P-~i~W~k~~~~i~~-~~~~~~~~--------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~ 88 (93)
T cd05849 19 EGKVSVNCRARANPFP-IYKWRKNNLDIDL-TNDRYSMV--------GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSRE 88 (93)
T ss_pred CCeEEEeCcCccCCCC-EEEEEECCEEccC-CCCeEEEE--------CCEEEECcCCcCCCCEEEEEEEEeCcceEEEcc
Confidence 4579999999999999 9999999998853 23455443 2689999985 689999999999999976 345
Q ss_pred EEE
Q psy17146 721 IML 723 (1011)
Q Consensus 721 ~~l 723 (1011)
++|
T Consensus 89 a~l 91 (93)
T cd05849 89 ATL 91 (93)
T ss_pred EEE
Confidence 554
No 97
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.21 E-value=8.4e-11 Score=102.58 Aligned_cols=79 Identities=27% Similarity=0.378 Sum_probs=63.8
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCC-CeEEEEe-cCCceee--------cC---CCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPA-PEITWIH-EDSDKVV--------GN---SPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~-p~v~W~k-~~~~~~~--------~~---~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
...|.+..+.+|++++|.|.+.|.|. |.++|++ ++..+.. .+ .++|+|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 83 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED 83 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence 34567778999999999999999995 7999998 5543211 11 2589999999999999999999954
Q ss_pred CCceeeEEEEEE
Q psy17146 615 FPEVGAEATVYL 626 (1011)
Q Consensus 615 ~~~~s~~~~l~V 626 (1011)
.+..++++.|.|
T Consensus 84 ~g~~~~s~~l~v 95 (96)
T cd05865 84 EGESEATVNVKI 95 (96)
T ss_pred CCcEEEEEEEEE
Confidence 588888888876
No 98
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.21 E-value=6.2e-11 Score=103.02 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=66.1
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee---------cCCCcEEEeecCCCCCEEEEEEEEecCCCc
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV---------GNSPNLTLLMTSDDLAGRYYCKASVMGFPE 617 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~---------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~ 617 (1011)
+..+|++..+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .....|+|.++..+|.|.|+|.|.| ..|+
T Consensus 3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N-~~G~ 81 (90)
T cd04972 3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAEN-PVGQ 81 (90)
T ss_pred cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEEC-CCCc
Confidence 34567778899999999999999999999999999854321 2235799999999999999999999 6788
Q ss_pred eeeEEEEEE
Q psy17146 618 VGAEATVYL 626 (1011)
Q Consensus 618 ~s~~~~l~V 626 (1011)
....+.|.|
T Consensus 82 ~~~~~~L~v 90 (90)
T cd04972 82 ANVSVQVTV 90 (90)
T ss_pred eeEEEEEeC
Confidence 888887764
No 99
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.21 E-value=7.6e-11 Score=104.04 Aligned_cols=82 Identities=22% Similarity=0.383 Sum_probs=67.7
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee--------------cCCCcEEEeecCCCCCEEEEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------------GNSPNLTLLMTSDDLAGRYYCK 609 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--------------~~~~~L~I~~v~~~d~G~Y~C~ 609 (1011)
.|+|...+....+..|+.++|.|.+.|.|.|.++|++++..+.. ...+.|.|.++..+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 57787777777777799999999999999999999998743321 1125799999999999999999
Q ss_pred EEecCCCceeeEEEEEE
Q psy17146 610 ASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 610 a~n~~~~~~s~~~~l~V 626 (1011)
|.| ..|..+..+.|.|
T Consensus 82 A~N-~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASN-TIGQDSQSMYLEV 97 (97)
T ss_pred Eec-CCCCeeEEEEEEC
Confidence 999 6888888888765
No 100
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.20 E-value=6.6e-11 Score=106.42 Aligned_cols=89 Identities=22% Similarity=0.417 Sum_probs=71.4
Q ss_pred EEecceeecCCceEEE----cCCCcEEEEEEEecCCCCeEEEEecCCceeec--------------CCCcEEEeecC-CC
Q psy17146 541 VTYGPRFRARPYSVQV----DRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG--------------NSPNLTLLMTS-DD 601 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v----~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~--------------~~~~L~I~~v~-~~ 601 (1011)
|.++|.|...|....+ ..|..++|.|.+.|.|.+.+.|+|++..+... ..+.|+|.++. .+
T Consensus 1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~ 80 (109)
T cd05773 1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAAL 80 (109)
T ss_pred CccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccC
Confidence 4568888877763222 35689999999999999999999998543211 12579999997 69
Q ss_pred CCEEEEEEEEecCCCceeeEEEEEEcCCC
Q psy17146 602 LAGRYYCKASVMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P 630 (1011)
|.|.|+|.|.| ..|.....+.|.|..+|
T Consensus 81 D~G~Y~C~A~N-~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 81 DYALFTCTAHN-SLGEDSLDIQLVSTSRP 108 (109)
T ss_pred CCEEEEEEEEe-CCccCcEEEEEEecCCC
Confidence 99999999999 78889999999998877
No 101
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.19 E-value=8.3e-11 Score=97.30 Aligned_cols=70 Identities=29% Similarity=0.493 Sum_probs=58.3
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
++|.|.+.|.|.| .+.|+|++..+.. .+.... .....|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p-~v~W~k~~~~~~~---~~~~~~------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTP-EISWIKIGGELPA---DRTKFE------NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCC-eEEEEECCeECCC---CceeEe------cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999999999 8999999987752 122221 12368999999999999999999999999999999887
No 102
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.19 E-value=9.1e-11 Score=103.32 Aligned_cols=84 Identities=27% Similarity=0.432 Sum_probs=67.6
Q ss_pred cceeecCC--ceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEEec
Q psy17146 544 GPRFRARP--YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASVM 613 (1011)
Q Consensus 544 ~P~~~~~p--~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n~ 613 (1011)
||.|...+ .+..+..|+.+.|.|.+.|.|.|.+.|+|+|..+. ....+.|+|.++..+|+|.|+|.|.|
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N- 79 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAEN- 79 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEc-
Confidence 35555443 45678999999999999999999999999874332 12345799999999999999999999
Q ss_pred CCCceeeEEEEEEcC
Q psy17146 614 GFPEVGAEATVYLKG 628 (1011)
Q Consensus 614 ~~~~~s~~~~l~V~~ 628 (1011)
..|.....+.|.|..
T Consensus 80 ~~G~~~~~~~L~V~~ 94 (95)
T cd05730 80 KAGEQEAEIHLKVFA 94 (95)
T ss_pred CCCeEEEEEEEEEEe
Confidence 677888888888753
No 103
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.18 E-value=7.7e-11 Score=97.13 Aligned_cols=72 Identities=19% Similarity=0.410 Sum_probs=57.9
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
|+.+.|.|. +.|.|.|+++|+|++..+..+.++.. .. .++|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 G~~~~l~C~-~~g~P~p~v~W~k~~~~l~~~~r~~~--~~-------~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 70 (73)
T cd05852 1 GGRVIIECK-PKAAPKPKFSWSKGTELLVNNSRISI--WD-------DGSLEILNITKLDEGSYTCFAENNRGKANSTGV 70 (73)
T ss_pred CCeEEEEEe-cceeCCCEEEEEeCCEecccCCCEEE--cC-------CCEEEECcCChhHCEEEEEEEECCCCceeEEEE
Confidence 678999999 77999999999999877655544432 11 247999999999999999999999998865555
Q ss_pred EE
Q psy17146 228 LK 229 (1011)
Q Consensus 228 v~ 229 (1011)
++
T Consensus 71 l~ 72 (73)
T cd05852 71 LS 72 (73)
T ss_pred EE
Confidence 43
No 104
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.18 E-value=1.8e-10 Score=99.20 Aligned_cols=85 Identities=24% Similarity=0.406 Sum_probs=64.5
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCCceeeec-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEE
Q psy17146 148 DREIELECISANGKPPAEITWIDGTGTVMSN-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVA 226 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~ 226 (1011)
|+.+.|.|. +.|.|++.++|+|++..+... .++.......+. ...++|.|.++..+|+|.|+|.|.|..|.. +.
T Consensus 1 g~~~~l~C~-~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~--~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~--~~ 75 (88)
T cd05735 1 GQKKEMSCT-AHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGD--EVISTLQILPTVREDSGFFSCHAINSYGED--RG 75 (88)
T ss_pred CCeEEEEEE-EECCCCCEEEEeeCCEECCCCCCcEEEEEecCCC--cEEEEEEECCCCcccCEEEEEEEEcCCCcc--eE
Confidence 788999999 778999999999998776443 344433322222 224689999999999999999999999987 56
Q ss_pred EEEEEEEeCCc
Q psy17146 227 RLKLLVKYAPK 237 (1011)
Q Consensus 227 ~v~v~v~~~P~ 237 (1011)
.+.|.|..+|.
T Consensus 76 ~~~L~V~~~P~ 86 (88)
T cd05735 76 IIQLTVQEPPD 86 (88)
T ss_pred EEEEEEeCCCC
Confidence 66677766553
No 105
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.18 E-value=1.4e-10 Score=101.23 Aligned_cols=80 Identities=18% Similarity=0.344 Sum_probs=64.2
Q ss_pred ecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEe
Q psy17146 138 VQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQN 217 (1011)
Q Consensus 138 ~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n 217 (1011)
..+..+.+.+|+.+.|.|. +.|+|.|.+.|+|++..+..+.++....... .++|.|.+++.+|+|.|+|.|.|
T Consensus 8 ~~p~~~~~~~G~~~~L~C~-~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~------~~~L~i~~~~~~D~G~Y~C~a~N 80 (92)
T cd05747 8 TKPRSLTVSEGESARFSCD-VDGEPAPTVTWMREGQIIVSSQRHQITSTEY------KSTFEISKVQMSDEGNYTVVVEN 80 (92)
T ss_pred ccCccEEEeCCCcEEEEEE-EeecCCCEEEEEECCEECCCCCcEEEEEcCC------eeEEEECCCCcccCEeEEEEEEc
Confidence 3445788899999999999 8899999999999988776554544332211 36899999999999999999999
Q ss_pred CCCCcee
Q psy17146 218 TADRTYK 224 (1011)
Q Consensus 218 ~~g~~~~ 224 (1011)
..|....
T Consensus 81 ~~G~~~~ 87 (92)
T cd05747 81 SEGKQEA 87 (92)
T ss_pred CCCCEeE
Confidence 9997633
No 106
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.18 E-value=1.2e-10 Score=99.40 Aligned_cols=72 Identities=24% Similarity=0.483 Sum_probs=62.1
Q ss_pred CcEEEEEEeecCCCc-cEEEEEECCeecCCCc------------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEE
Q psy17146 319 TDVRLYCKAEANPSH-MKYRWYINDQPVPAAA------------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETL 385 (1011)
Q Consensus 319 ~~v~l~C~~~~~p~~-~~i~W~k~g~~l~~~~------------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l 385 (1011)
+.++|.|.+.+.|.| +.++|+|||..+.... ....|.|.+++.. |+|.|+|.|.|..|..+.++.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~-D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLS-HAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChh-hCeEEEEEEecCCCCEEEEEEE
Confidence 468999999999865 5799999998875421 2358999999998 9999999999999999999999
Q ss_pred EEEecc
Q psy17146 386 DVTYGP 391 (1011)
Q Consensus 386 ~V~~~P 391 (1011)
.|..+|
T Consensus 80 ~V~~~P 85 (85)
T cd05854 80 VVRGPP 85 (85)
T ss_pred EEECCC
Confidence 998766
No 107
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.17 E-value=9.4e-11 Score=101.91 Aligned_cols=83 Identities=19% Similarity=0.371 Sum_probs=65.2
Q ss_pred CceeeecCCcEEEEEEEEe-----cCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEE
Q psy17146 636 RTQFGIPGDTARVECSAFS-----IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSV 710 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g-----~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a 710 (1011)
....+.+|+++.|.|.+.| .|.| .|+|+|+|..+.........+... ...|.|.++..+|+|.|+|.|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~-~v~Wyk~~~~~~~~~~~~~r~~~~------~~~L~I~~~~~~DsG~Y~C~~ 79 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGL-NLTWYKSDGKTPIPTEERSRMHQQ------KDLLWFLPAALEDSGLYTCVV 79 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCc-eEEEEEcCCCCcccccccceeeec------CCeEEEccCCcccCeEEEEEE
Confidence 3556789999999999999 6888 899999997654321111222111 268999999999999999999
Q ss_pred EcCCCCeEEEEEEEe
Q psy17146 711 SNPYGSDSVEIMLKP 725 (1011)
Q Consensus 711 ~N~~G~~~~~~~l~V 725 (1011)
+|..|..+.++.|.|
T Consensus 80 ~N~~g~~~~~~~L~v 94 (94)
T cd05756 80 RNSTYCMKVSISLTV 94 (94)
T ss_pred cCCCccEEEEEEEEC
Confidence 999999999998875
No 108
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.16 E-value=1.3e-10 Score=97.13 Aligned_cols=68 Identities=24% Similarity=0.436 Sum_probs=59.0
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
|+.+.|.|.+.|.|.|.++|+|+|..+. ..+++.|.|.+++.+|+|.|+|.|.| ..|...+.+.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N-~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASN-EYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEc-CCCEEEEEEEEEeC
Confidence 7889999999999999999999986542 12346899999999999999999999 78899999988873
No 109
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.15 E-value=1.2e-10 Score=96.57 Aligned_cols=73 Identities=26% Similarity=0.378 Sum_probs=55.9
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeec-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSN-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~ 229 (1011)
+.|+|. +.|.|.|.++|+|++..+..+ .++.......+ ..+|.|.+++.+|+|.|+|.|.|..|....++.+.
T Consensus 1 v~l~C~-v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 1 VRLECR-VSGVPHPQIFWKKENESLTHNTDRVSMHQDNCG-----YICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred CEEEEE-EeEecCCEEEEEECCEECCCCCCeEEEEEcCCC-----EEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 479999 889999999999999887542 33433222222 23699999999999999999999999886555543
No 110
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.15 E-value=1.9e-10 Score=99.50 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=65.0
Q ss_pred ceee--cCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee------ecCCCcEEEeecCCCCCEEEEEEEEecCCC
Q psy17146 545 PRFR--ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVMGFP 616 (1011)
Q Consensus 545 P~~~--~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 616 (1011)
|.+. ..+.++.+.+|++++|.|.+.|. .|.+.|+|++..+. ...+++|+|.+++.+|+|.|+|.|.|..+.
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 80 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSN 80 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCC
Confidence 4453 33457889999999999999999 99999999985432 234578999999999999999999995444
Q ss_pred ceeeEEEEEE
Q psy17146 617 EVGAEATVYL 626 (1011)
Q Consensus 617 ~~s~~~~l~V 626 (1011)
..+..+.|.|
T Consensus 81 ~~S~~~~L~V 90 (91)
T cd05740 81 MTSDPYILNV 90 (91)
T ss_pred EEeeeEEEEe
Confidence 5667777776
No 111
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.14 E-value=2.6e-10 Score=99.17 Aligned_cols=82 Identities=12% Similarity=0.298 Sum_probs=63.9
Q ss_pred CeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 141 DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+.+.+.+|+.+.|.|. +.|.|.|.+.|+|++..+....++........ .++|.|.+++.+|+|.|+|.|.|..|
T Consensus 9 ~~v~v~eG~~v~L~C~-v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G 82 (92)
T cd05891 9 DVVTIMEGKTLNLTCT-VFGNPDPEVIWFKNDQDIELSEHYSVKLEQGK-----YASLTIKGVTSEDSGKYSINVKNKYG 82 (92)
T ss_pred CcEEEcCCCEEEEEEE-EEEeCCCeEEEEECCEECCCCCCEEEEEcCCC-----EEEEEECCCChhhCEEEEEEEEeCCC
Confidence 4678899999999999 67899999999999987765544433222211 24799999999999999999999999
Q ss_pred CceeEEEEEE
Q psy17146 221 RTYKVARLKL 230 (1011)
Q Consensus 221 ~~~~s~~v~v 230 (1011)
.. ++.+.|
T Consensus 83 ~~--~~~~~v 90 (92)
T cd05891 83 GE--TVDVTV 90 (92)
T ss_pred ce--eeEEEE
Confidence 77 444444
No 112
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.14 E-value=2.6e-10 Score=93.92 Aligned_cols=65 Identities=26% Similarity=0.494 Sum_probs=55.7
Q ss_pred cEEEEEEEecCCCCeEEEEecCCcee------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 561 GVNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 561 ~~~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
++.|.|.+.|.|.|.++|+|++..+. ....+.|.|.++..+|+|.|+|.|.| ..|+.+..+.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N-~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAEN-DVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEc-CCCEEEEEEEEEC
Confidence 47899999999999999999985432 23457899999999999999999999 6888888888765
No 113
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.14 E-value=2e-10 Score=96.14 Aligned_cols=72 Identities=25% Similarity=0.434 Sum_probs=57.3
Q ss_pred EEEEEEEEe-cCCCCeEEEEECCeEecccCCCC-eEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 646 ARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDD-YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 646 v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
+.|.|.+.| .|.| .+.|+|+|+++....... +.+.. ....+.|.|.++..+|+|.|+|.|.|.+|.+..++.
T Consensus 1 ~~l~C~~~g~~P~p-~~~W~k~g~~l~~~~~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSL-RFKWFKDGKELNRKNKPRNIKIRN----KKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCc-eEEEEcCCeeccccCCcceEEEEe----cCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 479999999 8998 999999999987533222 12222 233579999999999999999999999999887765
No 114
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.14 E-value=2.4e-10 Score=97.37 Aligned_cols=75 Identities=24% Similarity=0.465 Sum_probs=58.1
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCe---EecccCC---CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGE---EIGVGSS---DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~---~l~~~~~---~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
|+.++|.|.+.|.|.| .++|+|++. .+..... .++... ..+.|.|.+++.+|+|.|+|.|.|.+|+
T Consensus 1 G~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 72 (81)
T cd05765 1 GETASFHCDVTGRPPP-EITWEKQVHGKENLIMRPNHVRGNVVVT-------NIGQLVIYNAQPQDAGLYTCTARNSGGL 72 (81)
T ss_pred CCcEEEEeeccccCCC-cEEEEecCCCCcceeecCCcccCCEEEc-------cccEEEEccCCcccCEEEEEEEecCCce
Confidence 7899999999999999 999999742 1111011 111111 1368999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy17146 717 DSVEIMLKP 725 (1011)
Q Consensus 717 ~~~~~~l~V 725 (1011)
....+.|.|
T Consensus 73 ~~~~~~l~v 81 (81)
T cd05765 73 LRANFPLSV 81 (81)
T ss_pred EEEEEEEeC
Confidence 999998875
No 115
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.14 E-value=2.1e-10 Score=96.23 Aligned_cols=75 Identities=24% Similarity=0.362 Sum_probs=59.6
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCC-eEEEEecCCceee---cCCCcEEEeecCCCCCEEEEEEEEecCCCc-eeeE
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVV---GNSPNLTLLMTSDDLAGRYYCKASVMGFPE-VGAE 621 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~k~~~~~~~---~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~-~s~~ 621 (1011)
|...|.++.+.+|+++.|.|.+.|.|.| .|.|+|+|..+.. ...+.|.|..+ .|+|.|.|.|.|. .|. .+..
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~-~G~~~s~~ 77 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNA-KGVTTSRT 77 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEec-cCcEEeee
Confidence 4567889999999999999999999999 7999999976532 34567999887 4789999999994 443 3344
Q ss_pred EEE
Q psy17146 622 ATV 624 (1011)
Q Consensus 622 ~~l 624 (1011)
+.|
T Consensus 78 a~~ 80 (81)
T cd05749 78 GTV 80 (81)
T ss_pred EEe
Confidence 443
No 116
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.13 E-value=1.4e-10 Score=97.60 Aligned_cols=77 Identities=29% Similarity=0.464 Sum_probs=60.9
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
|+.+.|.|. +.|.|.|.++|++++..+....++...... + .+.|+|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 1 G~~v~l~C~-~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~-~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 73 (78)
T cd05743 1 GETVEFTCV-ATGVPTPIINWRLNWGHVPDSARVSITSEG-G-----YGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD 73 (78)
T ss_pred CCEEEEEEE-EEEecCCEEEEEECCeECCCCCCEEEEECC-C-----EEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence 678999999 789999999999998877554444322211 1 358999999999999999999999998866666
Q ss_pred EEEE
Q psy17146 228 LKLL 231 (1011)
Q Consensus 228 v~v~ 231 (1011)
+.|+
T Consensus 74 ~~~~ 77 (78)
T cd05743 74 GILT 77 (78)
T ss_pred EEEE
Confidence 6554
No 117
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.13 E-value=2.6e-10 Score=101.81 Aligned_cols=82 Identities=27% Similarity=0.481 Sum_probs=64.9
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee-----------cCCCcEEEee-----cCCCCCEEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV-----------GNSPNLTLLM-----TSDDLAGRYY 607 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~-----------~~~~~L~I~~-----v~~~d~G~Y~ 607 (1011)
+|.|...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+.. ..++.+.+.. +..+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 58889999999999999999999999999999999999854432 1233333322 3689999999
Q ss_pred EEEEecCCCc-eeeEEEEEE
Q psy17146 608 CKASVMGFPE-VGAEATVYL 626 (1011)
Q Consensus 608 C~a~n~~~~~-~s~~~~l~V 626 (1011)
|.|.| ..|. .+..+.|.|
T Consensus 81 C~a~N-~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHN-SLGEAVSRNASLEV 99 (100)
T ss_pred EEEEc-cccceecceEEEEe
Confidence 99999 4555 777777766
No 118
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.13 E-value=1.7e-10 Score=97.19 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=60.0
Q ss_pred CcEEEEEEEecC--CCCeEEEEecCCceee-------------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEE
Q psy17146 560 AGVNLLCDVDGN--PAPEITWIHEDSDKVV-------------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 624 (1011)
Q Consensus 560 ~~~~l~C~~~g~--p~p~v~W~k~~~~~~~-------------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l 624 (1011)
+++.|.|.+.+. +.+.+.|+|+|..+.. ...+.|.|.+++.+|+|.|+|.|.| ..++.++++.|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n-~~~~~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQT-SVDKLSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEc-ccCceEEEEEE
Confidence 468999999874 4779999999866531 1346899999999999999999999 68999999999
Q ss_pred EEcCCC
Q psy17146 625 YLKGRP 630 (1011)
Q Consensus 625 ~V~~~P 630 (1011)
.|.+||
T Consensus 80 ~V~~pP 85 (85)
T cd05853 80 IVRGPP 85 (85)
T ss_pred EEecCC
Confidence 999987
No 119
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.13 E-value=2.1e-10 Score=98.50 Aligned_cols=70 Identities=21% Similarity=0.428 Sum_probs=60.0
Q ss_pred CcEEEEEEEecCCCC--eEEEEecCCceee-------------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEE
Q psy17146 560 AGVNLLCDVDGNPAP--EITWIHEDSDKVV-------------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 624 (1011)
Q Consensus 560 ~~~~l~C~~~g~p~p--~v~W~k~~~~~~~-------------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l 624 (1011)
+++.|.|.+.|.|.| .+.|+|+|..+.. ...++|.|.+++.+|+|.|+|.|.| ..+..++.+.|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-~~g~~~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQT-VVDSLSASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEec-CCCcEEEEEEE
Confidence 468999999999988 5699999865421 2357899999999999999999999 67889999999
Q ss_pred EEcCCC
Q psy17146 625 YLKGRP 630 (1011)
Q Consensus 625 ~V~~~P 630 (1011)
.|.+||
T Consensus 80 ~V~~pP 85 (85)
T cd04970 80 IVRGPP 85 (85)
T ss_pred EEECCC
Confidence 999887
No 120
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.13 E-value=2.2e-10 Score=96.04 Aligned_cols=67 Identities=25% Similarity=0.466 Sum_probs=53.0
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCC----CCCEEEEEEEEcCCCCeEE
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH----DHFGVYNCSVSNPYGSDSV 719 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~----~d~G~Y~C~a~N~~G~~~~ 719 (1011)
++|.|.+.|.|.| +|+|+|||.++......++.+.. ..+.|.|.++.. +|+|.|+|.|+|.+|+...
T Consensus 1 i~l~C~~~G~P~P-~v~W~k~g~~l~~~~~~~~~~~~------~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPP-TFSWTRNGTHFDPEKDPRVTMKP------DSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCCCCCCCEEEeC------CCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 4799999999999 99999999998654444444432 146889988754 7899999999999997643
No 121
>PHA03376 BARF1; Provisional
Probab=99.12 E-value=1.1e-09 Score=101.62 Aligned_cols=130 Identities=19% Similarity=0.278 Sum_probs=82.5
Q ss_pred CceeEEecCcEEEEEEEcC----CCCeeEEeeCCee---c--C------CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 35 QDQTAVVGSRVTLPCRVID----KTGVLQWTKDDFA---L--G------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~----~~~~v~W~k~~~~---l--~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
..+.+..||.++|+|.... ..-.|.|+|.+.. . . .........|+.+..+. ++++|.|.+++.
T Consensus 19 ~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~--gnvsLvI~~l~l 96 (221)
T PHA03376 19 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA--NTFFLVVTAANI 96 (221)
T ss_pred cchhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC--CeEEEEEEeeee
Confidence 3678999999999999873 2338999996431 0 0 11122344677777665 889999999999
Q ss_pred CCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCc
Q psy17146 100 DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTG 173 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~ 173 (1011)
+|.|+|+|.+..++.+.. ..-.|++..+-. ..+..... ....-+..++.|. .+|.|.|.+.|+-+.+
T Consensus 97 SDdGtY~C~fQkge~~~~----k~ehLt~V~~~~-Lsv~a~~~-dFp~~~~~~i~C~-sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 97 SHDGNYLCRMKLGETEVT----KQEHLSVVKPLT-LSVHSERS-QFPDFSVLTVTCT-VNAFPHPHVQWLMPEG 163 (221)
T ss_pred cCCceEEEEEEcCCCcee----eeeeeeeeecce-EEEEeccc-cCCCCCeeEEEEe-cCCcCCchheeccccC
Confidence 999999999987654321 112222221110 00000000 0011345689999 9999999999997644
No 122
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.12 E-value=3.2e-10 Score=94.89 Aligned_cols=68 Identities=28% Similarity=0.553 Sum_probs=60.2
Q ss_pred CCcEEEEEEeecCCCccEEEEEECCeecCCCc-------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEE
Q psy17146 318 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAA-------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387 (1011)
Q Consensus 318 g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~-------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V 387 (1011)
|+.++|.|.+.|.|.| +++|+|+|..+.... ....|.|.+++.+ |+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p-~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTP-NITWSINGAPIEGTDPDPRRHVSSGALILTDVQPS-DTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCC-eEEEEECCEECCCCCCCceEEeeCCEEEECCCChh-hCEEEEEEEECCCCeEEEEEEEEE
Confidence 7889999999999987 999999999886532 2468999999987 999999999999999988888877
No 123
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.12 E-value=2.6e-10 Score=92.80 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=53.8
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
+.|.|.+.|.|.| ++.|+|||.++... ..++... ..+|.|.+++.+|+|.|+|.|+|..........+
T Consensus 1 ~~l~c~v~g~P~P-~v~W~kdg~~l~~~-~~~~~~~--------~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAP-EVIWLKDGLPAAEK-CSRYHVD--------GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCC-eEEEEECCEECCCC-CcEEEeC--------CCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 4799999999999 99999999998742 2333321 2479999999999999999999997765555444
No 124
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.12 E-value=3e-10 Score=94.69 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=55.7
Q ss_pred cEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE
Q psy17146 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV 225 (1011)
Q Consensus 150 ~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s 225 (1011)
.+.|.|. +.|.|.|+++|+|++..+..+.++......+ .+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus 1 ~~~l~c~-~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 69 (74)
T cd05748 1 SVRLEVP-ISGRPTPTVTWSKDGKPLKLSGRVQIETTAS------STSLVIKNAERSDSGKYTLTLKNPAGEKSAT 69 (74)
T ss_pred CEEEEee-EeeeCCCeEEEEECCEEcCCCCeEEEEECCC------eEEEEECCCCcCcCEEEEEEEECCCccEEEE
Confidence 3789999 8899999999999998886555554333222 3689999999999999999999999987433
No 125
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.12 E-value=2.9e-10 Score=96.08 Aligned_cols=72 Identities=28% Similarity=0.504 Sum_probs=55.2
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecc------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-E
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGV------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-S 718 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~ 718 (1011)
|+|.|.+.|.|.| .++|++++..... ....++.+.. .++|.|.++..+|+|.|.|.|.|..|.+ +
T Consensus 1 v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~-------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s 72 (79)
T cd05734 1 VTLNCSAEGYPPP-TIVWKHSKGRGHPQHTHTCCLAGRIQLLS-------NGSLLIKHVLEEDSGYYLCKVSNDVGADAS 72 (79)
T ss_pred CEeEeeCeEeCCC-EEEEEECCCccccccccccccCCCEEEec-------CCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence 5799999999999 9999997542211 0234444433 3689999999999999999999999977 6
Q ss_pred EEEEEEe
Q psy17146 719 VEIMLKP 725 (1011)
Q Consensus 719 ~~~~l~V 725 (1011)
..+.|+|
T Consensus 73 ~~~~l~~ 79 (79)
T cd05734 73 KSMVLTV 79 (79)
T ss_pred eEEEEeC
Confidence 6776654
No 126
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.12 E-value=3.1e-10 Score=94.83 Aligned_cols=71 Identities=24% Similarity=0.510 Sum_probs=53.4
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCC----CCCEEEEEEEEcCCCCeEE-E
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH----DHFGVYNCSVSNPYGSDSV-E 720 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~----~d~G~Y~C~a~N~~G~~~~-~ 720 (1011)
+.|.|.+.|.|.| +|+|+|||.++......++.+.. ..++|.|..+.. .|.|.|+|.|+|.+|.... .
T Consensus 1 ~~l~C~a~G~P~P-~i~W~k~g~~l~~~~~~~~~~~~------~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~ 73 (77)
T cd05874 1 IVIQCEAKGKPPP-SFSWTRNGTHFDIDKDPKVTMKP------NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNN 73 (77)
T ss_pred CEEEeeCcccCCC-eEEEEECCeECCCcCCCCEEEeC------CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeE
Confidence 4799999999999 99999999988543444444332 136788877764 3789999999999997654 4
Q ss_pred EEE
Q psy17146 721 IML 723 (1011)
Q Consensus 721 ~~l 723 (1011)
++|
T Consensus 74 ~~~ 76 (77)
T cd05874 74 IVI 76 (77)
T ss_pred EEE
Confidence 443
No 127
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.12 E-value=2.5e-10 Score=93.96 Aligned_cols=65 Identities=26% Similarity=0.393 Sum_probs=55.8
Q ss_pred EEEEEEEecCCCCeEEEEecCCcee------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
+.|.|.+.|.|.|.+.|+|++..+. ....++|+|.++..+|+|.|+|.|.| ..|..+..+.|.|+
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N-~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAEN-SEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEc-CCCeEEEEEEEEEC
Confidence 4799999999999999999975432 34567999999999999999999999 67888888888773
No 128
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.11 E-value=2.4e-10 Score=95.37 Aligned_cols=76 Identities=18% Similarity=0.378 Sum_probs=59.3
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
|.+. .|+...+.+|++++|.|.+.+.|.+..+.|+|||..+.. ....|.|.++ .+|+|.|+|
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------------~~~~l~i~~~-~~dsG~Y~C 63 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------------TTNSYRIRAA-NNDSGEYRC 63 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------------cCCeEEEeec-ccCCEEeEE
Confidence 3444 456678999999999999999887547999999998741 1258999999 999999999
Q ss_pred EEEcCCCCeEEEEEEE
Q psy17146 709 SVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~ 724 (1011)
.|.|. ..+..+.|.
T Consensus 64 ~a~~~--~~S~~v~l~ 77 (78)
T cd05752 64 QTQGS--SLSDPVHLE 77 (78)
T ss_pred ECCCC--cCCCCEEEe
Confidence 99986 444444443
No 129
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.11 E-value=3.8e-10 Score=94.30 Aligned_cols=67 Identities=28% Similarity=0.433 Sum_probs=52.6
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCC----CCCEEEEEEEEcCCCCeEE
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH----DHFGVYNCSVSNPYGSDSV 719 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~----~d~G~Y~C~a~N~~G~~~~ 719 (1011)
+.|.|.+.|.|.| .|+|+|+|..+......++.+... .++|.|..+.. +|+|.|+|.|+|.+|....
T Consensus 1 ~~l~C~~~G~P~P-~v~W~k~g~~~~~~~~~~~~~~~~------~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVP-TFQWTRNGKFFNVAKDPRVSMRRR------SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCC-EEEEEECCEEccCcCCCcEEEeCC------CceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 4799999999999 999999999876545556655321 36899987642 4699999999999996643
No 130
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.11 E-value=3.7e-10 Score=98.65 Aligned_cols=80 Identities=28% Similarity=0.451 Sum_probs=62.4
Q ss_pred cceeecCCceEEEc---CCCcEEEEEEEecCCCCeEEEEecCCceee-------cCCCcEEEeecC-CCCCEEEEEEEEe
Q psy17146 544 GPRFRARPYSVQVD---RGAGVNLLCDVDGNPAPEITWIHEDSDKVV-------GNSPNLTLLMTS-DDLAGRYYCKASV 612 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~---~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~-------~~~~~L~I~~v~-~~d~G~Y~C~a~n 612 (1011)
.|.|...|.++.+. +|+.++|.|.+.|.|.|.++|+|++..+.. ..++.|.|.++. .+|+|.|+|.|.|
T Consensus 1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05848 1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATN 80 (94)
T ss_pred CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEc
Confidence 37788888887665 478999999999999999999999865431 234789998875 6999999999999
Q ss_pred cCCCce-eeEEEE
Q psy17146 613 MGFPEV-GAEATV 624 (1011)
Q Consensus 613 ~~~~~~-s~~~~l 624 (1011)
..|+. +..+.|
T Consensus 81 -~~G~~~S~~~~l 92 (94)
T cd05848 81 -SIGSILSREALL 92 (94)
T ss_pred -CCCeEEeccEEE
Confidence 45544 444443
No 131
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.10 E-value=3.5e-10 Score=94.06 Aligned_cols=72 Identities=24% Similarity=0.351 Sum_probs=54.9
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeee-ceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMS-NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~-~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v 228 (1011)
+.|+|. +.|.|.|.+.|+|++..+.. ..++.......+ ..+|.|.+++.+|+|.|+|.|.|..|....++.+
T Consensus 1 v~L~C~-v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (75)
T cd05744 1 VRLECR-VSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCG-----RICLLIQNANKEDAGWYTVSAVNEAGVVSCNARL 73 (75)
T ss_pred CEEEEE-EeecCCCeEEEEECCEECCCCCCcEEEEEcCCC-----eEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEE
Confidence 479999 78999999999999987754 233332222222 2479999999999999999999999987555444
No 132
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.09 E-value=5.7e-10 Score=97.51 Aligned_cols=80 Identities=26% Similarity=0.392 Sum_probs=62.3
Q ss_pred cceeecCCceEEEcCC---CcEEEEEEEecCCCCeEEEEecCCceee-------cCCCcEEEeecC-CCCCEEEEEEEEe
Q psy17146 544 GPRFRARPYSVQVDRG---AGVNLLCDVDGNPAPEITWIHEDSDKVV-------GNSPNLTLLMTS-DDLAGRYYCKASV 612 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G---~~~~l~C~~~g~p~p~v~W~k~~~~~~~-------~~~~~L~I~~v~-~~d~G~Y~C~a~n 612 (1011)
.|.|...|.++.+.+| ++++|.|.+.|.|.|.++|+++|..+.. ..+++|.|.++. .+|+|.|+|.|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05850 1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAIN 80 (94)
T ss_pred CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEc
Confidence 3778888988887666 5799999999999999999999865432 224689998765 6999999999999
Q ss_pred cCCCc-eeeEEEE
Q psy17146 613 MGFPE-VGAEATV 624 (1011)
Q Consensus 613 ~~~~~-~s~~~~l 624 (1011)
. .|. .+..+.|
T Consensus 81 ~-~G~~~s~~a~l 92 (94)
T cd05850 81 R-CGTVVSREANL 92 (94)
T ss_pred C-cCcEEEEEEEE
Confidence 4 444 4445554
No 133
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.09 E-value=2.9e-10 Score=95.45 Aligned_cols=76 Identities=24% Similarity=0.351 Sum_probs=61.0
Q ss_pred EeeCCCceEecCCCcEEEEeecCCCCCC-ceEEEeCCCceee---ccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEE
Q psy17146 393 FRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVV---GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEA 468 (1011)
Q Consensus 393 ~~~~p~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~~~~~~~---~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~ 468 (1011)
|...|.++.+.+|+++.|.|.+.|+|.| +|.|+|++..+.. ...+.|.|..+ .|+|.|.|.|.|..+...+..+
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a 78 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTG 78 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeE
Confidence 3456888999999999999999999999 7999999875432 33456888776 5789999999998776666555
Q ss_pred EE
Q psy17146 469 TV 470 (1011)
Q Consensus 469 ~v 470 (1011)
+|
T Consensus 79 ~~ 80 (81)
T cd05749 79 TV 80 (81)
T ss_pred Ee
Confidence 54
No 134
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.09 E-value=3.5e-10 Score=93.88 Aligned_cols=67 Identities=21% Similarity=0.402 Sum_probs=58.1
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCCce------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDSDK------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
|+.+.|.|.+.|.|.|.++|+|++..+ .....++|.|.+++.+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N-~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAEN-FFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEEC-CCCceEEEEEEEC
Confidence 788999999999999999999998543 334457899999999999999999999 6888888888765
No 135
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.09 E-value=5.3e-10 Score=98.74 Aligned_cols=87 Identities=25% Similarity=0.366 Sum_probs=64.2
Q ss_pred CeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeece-----eEEEeeecCCceEEEEEEEEEeeccCcCCc
Q psy17146 135 PRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNV-----RVTEEASVDGRRTTVKSTLVLTPKKEHHNT 209 (1011)
Q Consensus 135 ~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~-----~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 209 (1011)
|.|.......+.+|+.+.|.|. +.|.|.|.+.|+|++..+.... ++... .. ...+.|.|.+++.+|+|
T Consensus 3 P~i~~~~~~~~~~g~~v~l~C~-~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~L~I~~v~~~D~G 75 (96)
T cd05732 3 PKITYLENQTAVELEQITLTCE-AEGDPIPEITWRRATRNFSEGDKSLDGRIVVR--GH----ARVSSLTLKDVQLTDAG 75 (96)
T ss_pred ccceecCceeEecCCcEEEEEE-EeEcCCCcEEEEECCcccCCCCccccceEEEe--CC----ccEEEEEECcCCcCcCE
Confidence 4555555677889999999999 7799999999999886554321 11111 11 12368999999999999
Q ss_pred EEEEEEEeCCCCceeEEEEEE
Q psy17146 210 TFTCQAQNTADRTYKVARLKL 230 (1011)
Q Consensus 210 ~Y~C~a~n~~g~~~~s~~v~v 230 (1011)
.|+|.|.|..|... ..+.|
T Consensus 76 ~Y~C~a~N~~G~~~--~s~~l 94 (96)
T cd05732 76 RYDCEASNRIGGDQ--QSMYL 94 (96)
T ss_pred EeEEEEEeCCCCcE--EEEEE
Confidence 99999999999874 44444
No 136
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.09 E-value=9.4e-10 Score=95.79 Aligned_cols=68 Identities=28% Similarity=0.534 Sum_probs=55.3
Q ss_pred cCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCC-CCCEEEEEEEEcCCCCeE
Q psy17146 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH-DHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~d~G~Y~C~a~N~~G~~~ 718 (1011)
.|+++.|.|.+.|.|.| .++|+|++..+......++.+.. ..|.|.++.. +|+|.|+|.|+|.+|+..
T Consensus 18 ~~~~~~l~C~~~g~p~p-~i~W~k~~~~l~~~~~~~~~~~~--------~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 18 DEGKVSLNCRARGSPPP-TYRWLMNGTEIDDEPDSRYSLVG--------GNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCCEEEEEEeeeEcCCC-EEEEEECCEECCCCCCCCEEEEC--------CEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 34679999999999999 99999999998543344554432 5799998874 899999999999999754
No 137
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.09 E-value=7.3e-10 Score=95.60 Aligned_cols=83 Identities=22% Similarity=0.382 Sum_probs=61.4
Q ss_pred CeeeecCCCcEEEEEEccCCCCCcEEEEEeCC-ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 141 DTLYTTEDREIELECISANGKPPAEITWIDGT-GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~-~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
..+.+.+|+.+.|.|. +.|.|. .++|+|++ ..+..+.++.... ++. .+.|.|.++..+|+|.|+|.|.|..
T Consensus 8 ~~~~v~~G~~v~l~C~-~~G~P~-~v~W~k~~g~~~~~~~r~~~~~--~g~----~~~L~I~~v~~~D~G~Y~C~A~N~~ 79 (92)
T cd05866 8 SKVELSVGESKFFTCT-AIGEPE-SIDWYNPQGEKIVSSQRVVVQK--EGV----RSRLTIYNANIEDAGIYRCQATDAK 79 (92)
T ss_pred cceEEcCCCeEEEEEE-EEEeCC-eEEEEeCCCeEecCCCCEEEEe--CCC----eeEEEEecCChHHCEEEEEEEEcCC
Confidence 3566789999999999 778998 99999854 4444444443221 111 2589999999999999999999999
Q ss_pred CCceeEEEEEEEE
Q psy17146 220 DRTYKVARLKLLV 232 (1011)
Q Consensus 220 g~~~~s~~v~v~v 232 (1011)
|... ...+.|.+
T Consensus 80 G~~~-~~~i~l~~ 91 (92)
T cd05866 80 GQTQ-EATVVLEI 91 (92)
T ss_pred CcEE-EEEEEEEE
Confidence 8763 55555543
No 138
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.08 E-value=3.7e-10 Score=94.63 Aligned_cols=74 Identities=18% Similarity=0.341 Sum_probs=57.2
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeece-eEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNV-RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~ 229 (1011)
++|.|. +.|.|.|.++|+|++..+.... ++.. ... .+.|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus 1 v~L~C~-~~g~P~p~v~W~k~g~~l~~~~~~~~~--~~~------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~ 71 (77)
T cd05760 1 VTLRCH-IDGHPRPTYQWFRDGTPLSDGQGNYSV--SSK------ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFT 71 (77)
T ss_pred CEEEEE-eeecCCCcEEEEECCEECCCCCccEEE--eCC------CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEE
Confidence 479999 7899999999999988765432 2211 111 24799999999999999999999999876666777
Q ss_pred EEEE
Q psy17146 230 LLVK 233 (1011)
Q Consensus 230 v~v~ 233 (1011)
|.|.
T Consensus 72 l~v~ 75 (77)
T cd05760 72 LSII 75 (77)
T ss_pred EEEe
Confidence 7663
No 139
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.08 E-value=6.9e-10 Score=96.45 Aligned_cols=81 Identities=27% Similarity=0.356 Sum_probs=64.1
Q ss_pred cceEeeCCCceEecCCC---cEEEEeecCCCCCCceEEEeCCCcee------eccCCcEEEEeec-cCCCeEEEEEEEEc
Q psy17146 390 GPRFRARPYSVQVDRGA---GVNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTS-DDLAGRYYCKASVM 459 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~---~v~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~-~~d~G~Y~C~a~n~ 459 (1011)
+|.|...|.++.+.++. .+.|.|.+.|+|.|.++|+|++..+. ...++.|.|.++. .+|+|.|+|.|.|.
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~ 80 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNI 80 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeC
Confidence 47788888877666544 79999999999999999999975432 2235789998875 69999999999998
Q ss_pred CCcceeeEEEE
Q psy17146 460 GFPEVGAEATV 470 (1011)
Q Consensus 460 ~~~~~s~~~~v 470 (1011)
.+...+..+.|
T Consensus 81 ~G~~~s~~a~l 91 (93)
T cd05849 81 YGKVRSREATL 91 (93)
T ss_pred cceEEEccEEE
Confidence 77766666655
No 140
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.08 E-value=5.6e-10 Score=96.96 Aligned_cols=70 Identities=26% Similarity=0.446 Sum_probs=60.3
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCCce--------------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEE
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDSDK--------------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 624 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~~~--------------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l 624 (1011)
|+.++|.|.+.|.|.|.+.|+|++... ....++.|+|.+++.+|+|.|+|.|.| ..|.....+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N-~~G~~~~~~~l 79 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLN-VAGSILTKAYL 79 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEc-CCCceEEEEEE
Confidence 788999999999999999999987542 122356899999999999999999999 67888999999
Q ss_pred EEcCC
Q psy17146 625 YLKGR 629 (1011)
Q Consensus 625 ~V~~~ 629 (1011)
.|.+.
T Consensus 80 ~V~~~ 84 (90)
T cd05726 80 EVTDV 84 (90)
T ss_pred EEeec
Confidence 99764
No 141
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.08 E-value=5.2e-10 Score=95.80 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=61.2
Q ss_pred CCcEEEEEEEEec--CCCCeEEEEECCeEecccCCC-CeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEE
Q psy17146 643 GDTARVECSAFSI--PPPEKVTWSYRGEEIGVGSSD-DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719 (1011)
Q Consensus 643 G~~v~L~C~~~g~--p~p~~v~W~~~g~~l~~~~~~-~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~ 719 (1011)
|+.++|.|.+.|. |.| .+.|+++++.+...... ...... ......+.|.|.+++.+|+|.|+|.|.|..|..++
T Consensus 1 Ge~~~L~C~~~g~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~ 77 (84)
T cd05742 1 GETLVLNCTVLTELNEGV-DFQWTYPGKKRGRGKSMVTRQSLS--EATELSSTLTIPNATLKDSGTYTCAASSGTMDQKE 77 (84)
T ss_pred CCeEEEEEEEEeCCCccE-EEEEecCCcccCCceEeecccccc--cceEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence 7899999999999 777 99999988765421111 011111 11234689999999999999999999999999999
Q ss_pred EEEEEe
Q psy17146 720 EIMLKP 725 (1011)
Q Consensus 720 ~~~l~V 725 (1011)
+..|.|
T Consensus 78 s~~v~v 83 (84)
T cd05742 78 STKVNI 83 (84)
T ss_pred EEEEEE
Confidence 988876
No 142
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.08 E-value=3.3e-10 Score=94.50 Aligned_cols=77 Identities=14% Similarity=0.279 Sum_probs=63.7
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCC-eEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEE
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 623 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 623 (1011)
|.+...|....+.+|++++|.|.+.+.|.+ .+.|+|++..+ ...++.|+|.++ .+|+|.|+|+|.|. ..+..+.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l-~~~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v~ 75 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL-ETTTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPVH 75 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEe-eccCCeEEEeec-ccCCEEeEEECCCC---cCCCCEE
Confidence 456778889999999999999999998864 79999998655 356789999999 99999999999873 5555555
Q ss_pred EEE
Q psy17146 624 VYL 626 (1011)
Q Consensus 624 l~V 626 (1011)
|.|
T Consensus 76 l~V 78 (78)
T cd05752 76 LEV 78 (78)
T ss_pred EeC
Confidence 543
No 143
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.08 E-value=3.7e-10 Score=97.94 Aligned_cols=68 Identities=28% Similarity=0.390 Sum_probs=55.6
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCC----ce---------ee---------cCCCcEEEeecCCCCCEEEEEEEEecCCC
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDS----DK---------VV---------GNSPNLTLLMTSDDLAGRYYCKASVMGFP 616 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~----~~---------~~---------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 616 (1011)
|+.++|.|.+.|.|.|.|+|+|++. .+ .. .....|.|.+++.+|+|.|+|.|.| ..|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N-~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGN-SIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeec-ccC
Confidence 6889999999999999999999631 10 00 1235799999999999999999999 678
Q ss_pred ceeeEEEEEEc
Q psy17146 617 EVGAEATVYLK 627 (1011)
Q Consensus 617 ~~s~~~~l~V~ 627 (1011)
...+++.|.|.
T Consensus 80 ~~~~sa~L~V~ 90 (90)
T cd04974 80 PSHHSAWLTVL 90 (90)
T ss_pred cccCCEEEEeC
Confidence 88888888773
No 144
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.07 E-value=6.8e-10 Score=93.57 Aligned_cols=68 Identities=28% Similarity=0.482 Sum_probs=56.2
Q ss_pred CCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeCC
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGI 113 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 113 (1011)
|++..+.+|++++|.|.+.+..+.+.|+|+|.++.. ..|+.+.. .+|.|.+++.+|+|.|+|.+.|..
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~~~~v~W~k~g~~l~~------~~~~~~~~------~~L~I~~~~~~DsG~Y~C~a~n~~ 68 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDDVQSINWTKDGVQLGE------NNRTRITG------EEVQIKDAVPRDSGLYACVTSSPS 68 (79)
T ss_pred CCcEEecCCCCEEEEEEecCCCceEEEeeCCcCCCC------CceEEEeC------CEEEECCCChhhCEEEEEEEeCCC
Confidence 567889999999999999998778999999977632 24555532 179999999999999999998853
No 145
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.07 E-value=8.6e-10 Score=94.86 Aligned_cols=79 Identities=13% Similarity=0.283 Sum_probs=59.9
Q ss_pred eeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 143 LYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 143 ~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..+.+|+.+.|.|. +.|.|.|.+.|+|++..+..+.+....... .....|.|.++..+|+|.|+|.|.|..|..
T Consensus 4 ~~v~~G~~~~L~C~-~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-----~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05857 4 HAVPAANTVKFRCP-AAGNPTPTMRWLKNGKEFKQEHRIGGYKVR-----NQHWSLIMESVVPSDKGNYTCVVENEYGSI 77 (85)
T ss_pred EEcCCCCEEEEEEE-cCCCCCCEEEEEECCEECCCCCceeeeEEe-----CCceEEEEccCCcccCEEEEEEEEeCCCEE
Confidence 35678999999999 788999999999999887654332111110 113579999999999999999999999977
Q ss_pred eeEEE
Q psy17146 223 YKVAR 227 (1011)
Q Consensus 223 ~~s~~ 227 (1011)
..+..
T Consensus 78 ~~~~~ 82 (85)
T cd05857 78 NHTYH 82 (85)
T ss_pred EEEEE
Confidence 44433
No 146
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.07 E-value=7.2e-10 Score=96.31 Aligned_cols=88 Identities=31% Similarity=0.448 Sum_probs=64.2
Q ss_pred CceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCC--cccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEe
Q psy17146 35 QDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGP--HRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~--~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 111 (1011)
.++++.+|++|+|.|.+.+ +.+.+.|+|++..+.. ........|+.+.... .+.++|.|.+|+.+|+|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKST-PTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCC-CceEEEEECCCCcccCEEEEEEEEe
Confidence 6889999999999999998 6779999999864311 1111233577655443 3568999999999999999999987
Q ss_pred CCCCCcceeeeEEEEEE
Q psy17146 112 GILGEPAIRSRFATLTV 128 (1011)
Q Consensus 112 ~~~~~~~~~s~~~~l~V 128 (1011)
.+ ..++.++|+|
T Consensus 84 ~~-----~~~~~~~~~v 95 (95)
T cd05882 84 MP-----VRTAKATVTV 95 (95)
T ss_pred ec-----cccEEEEEEC
Confidence 42 2345555554
No 147
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.07 E-value=1.1e-09 Score=94.60 Aligned_cols=77 Identities=25% Similarity=0.386 Sum_probs=61.6
Q ss_pred CCceEEEcCCCcEEEEEEE-ecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeE
Q psy17146 550 RPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 621 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~-~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 621 (1011)
.|.+..+.+|+++.|.|.+ .|.|.|.+.|+|++..+. ...++.|.|.++..+|+|.|+|.|.|..+...+..
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~ 81 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAA 81 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeee
Confidence 4678889999999999998 799999999999874432 23357899999999999999999999433334556
Q ss_pred EEEEE
Q psy17146 622 ATVYL 626 (1011)
Q Consensus 622 ~~l~V 626 (1011)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05724 82 ARLSV 86 (86)
T ss_pred EEEEC
Confidence 66543
No 148
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.06 E-value=6e-10 Score=90.62 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=55.5
Q ss_pred EEEEEEeecCCCccEEEEEECCeecCCC---cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEE
Q psy17146 321 VRLYCKAEANPSHMKYRWYINDQPVPAA---ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387 (1011)
Q Consensus 321 v~l~C~~~~~p~~~~i~W~k~g~~l~~~---~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V 387 (1011)
++|.|.+.|.|.| .+.|+|||+++... .....|.|.++..+ |+|.|+|.|.|..|..+....+.+
T Consensus 1 ~~~~c~v~G~P~P-~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~-D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPP-EVKWYKNGQLIVLNHTFKRGVHLTIYEVTEK-DAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCCCEEccCCEEEECcCCHH-HCEEEEEEEEECCCceeeEEEEEE
Confidence 4789999999998 99999999999764 23468999999998 999999999999998876666655
No 149
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.06 E-value=1.1e-09 Score=96.92 Aligned_cols=88 Identities=27% Similarity=0.393 Sum_probs=65.8
Q ss_pred CCeeecCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCceeeec--eeEEEeeecCCceEEEEEEEEEeeccC-cCCc
Q psy17146 134 PPRIVQGDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVMSN--VRVTEEASVDGRRTTVKSTLVLTPKKE-HHNT 209 (1011)
Q Consensus 134 ~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~--~~~~~~~~~~~~~~~~~~~L~I~~~~~-~d~G 209 (1011)
+|.|.......+.+|+.+.|.|. +.|.|.| .+.|++++..+... .++.+...... ....++|.|.+++. +|.|
T Consensus 2 pp~i~~~~~~~~~~G~~v~L~C~-~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~--~~~~s~L~I~~v~~~d~~G 78 (98)
T cd05758 2 PPIITSEATQYAILGDKGRVECF-IFSTPPPDRIVWTWKENELESGSSGRYTVETDPSP--GGVLSTLTISNTQESDFQT 78 (98)
T ss_pred CCeEcCCCcEEEeCCCcEEEEEE-EcccCCCCEeEEEECCEEccCCCCCCEEEEEecCC--CceEEEEEECCccccccce
Confidence 45666566777889999999999 7799998 69999998877542 34443332211 12236899999998 5599
Q ss_pred EEEEEEEeCCCCcee
Q psy17146 210 TFTCQAQNTADRTYK 224 (1011)
Q Consensus 210 ~Y~C~a~n~~g~~~~ 224 (1011)
.|+|.|.|..|.+..
T Consensus 79 ~Y~C~A~N~~G~~~~ 93 (98)
T cd05758 79 SYNCTAWNSFGSGTA 93 (98)
T ss_pred eEEEEEEcCCCcccE
Confidence 999999999998743
No 150
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.05 E-value=7.3e-10 Score=91.86 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=52.5
Q ss_pred EEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE
Q psy17146 153 LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV 225 (1011)
Q Consensus 153 L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s 225 (1011)
|.|. +.|+|.|+++|+||+..+..+.+......... .....+.|.|.++..+|+|.|+|.|.|..|.+..+
T Consensus 3 i~~~-v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~ 73 (79)
T cd05855 3 IPFT-VKGNPKPTLQWFHEGAILNESEYICTKIHVIN-NTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN 73 (79)
T ss_pred EEEE-EeEeCCCceEEEECCEECCCCcceeeeeEeec-ccceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence 6788 78999999999999998866543321111111 11124689999999999999999999999987433
No 151
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.04 E-value=7.8e-10 Score=92.81 Aligned_cols=73 Identities=23% Similarity=0.323 Sum_probs=56.0
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
|+.+.|.|. +.|.|.|++.|++++..+....... +.......|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 G~~~~l~C~-~~g~P~p~i~W~~~g~~~~~~~~~~-------~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd04978 1 GETGRLDCE-AEGIPQPTITWRLNGVPIEELPPDP-------RRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAF 72 (76)
T ss_pred CCeEEEEEE-ceeeCCCEEEEEECCEECCCCCCcc-------eEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEE
Confidence 678999999 7899999999999988775432211 11112358999999999999999999999998744433
Q ss_pred E
Q psy17146 228 L 228 (1011)
Q Consensus 228 v 228 (1011)
+
T Consensus 73 l 73 (76)
T cd04978 73 V 73 (76)
T ss_pred E
Confidence 3
No 152
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.04 E-value=9.9e-10 Score=96.60 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=63.8
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeec-----CCCCCEEEEEEEEec
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMT-----SDDLAGRYYCKASVM 613 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v-----~~~d~G~Y~C~a~n~ 613 (1011)
|...|.+..+.+|+++.|.|.+.|.|.|.++|+|+|..+. ...+++|.|.++ ..+|+|.|+|.|.|.
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQND 81 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence 4567888899999999999999999999999999986442 223567888777 589999999999994
Q ss_pred CCCc-eeeEEEEEE
Q psy17146 614 GFPE-VGAEATVYL 626 (1011)
Q Consensus 614 ~~~~-~s~~~~l~V 626 (1011)
..|. .+..+.|.|
T Consensus 82 ~~G~~~s~~~~l~v 95 (95)
T cd05722 82 SLGSIVSRTARLTV 95 (95)
T ss_pred ccCcEEEeeeEEeC
Confidence 1454 466777754
No 153
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.04 E-value=8.7e-10 Score=92.35 Aligned_cols=73 Identities=27% Similarity=0.487 Sum_probs=56.1
Q ss_pred EEEEEEEEe-cCCCCeEEEEECCeEecccCC--CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 646 ARVECSAFS-IPPPEKVTWSYRGEEIGVGSS--DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 646 v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~--~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
+.|.|.+.+ .|.+ .++|+++|+.+..... .++.+.. ....+.|.|.++..+|+|.|+|.|.|.+|.+++++.
T Consensus 1 ~~L~C~a~~~~p~~-~~~W~~~g~~i~~~~~~~~~~~~~~----~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSL-RFKWFKNGKEIGAKNKPDNKIKIRK----KKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCC-ceEEEECCcccccCCCCCceEEEEe----CCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999876 4667 9999999999864322 2233322 233578999999999999999999999999988775
Q ss_pred E
Q psy17146 723 L 723 (1011)
Q Consensus 723 l 723 (1011)
+
T Consensus 76 ~ 76 (76)
T cd05895 76 V 76 (76)
T ss_pred C
Confidence 3
No 154
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.04 E-value=7.4e-10 Score=92.50 Aligned_cols=64 Identities=23% Similarity=0.467 Sum_probs=54.2
Q ss_pred EEEEEEEecCCCCeEEEEecCCce----------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSDK----------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~~----------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
++|.|.+.|.|.|.++|+|++... .....+.|.|.++..+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N-~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQN-TAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEc-CCCEEEeeEEEEE
Confidence 479999999999999999997531 122356899999999999999999999 6788888888877
No 155
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.03 E-value=8.9e-10 Score=91.55 Aligned_cols=66 Identities=29% Similarity=0.496 Sum_probs=53.9
Q ss_pred EEEEEEEecCCCCeEEEEecCCce--------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSDK--------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~~--------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
++|.|.+.|.|.|.+.|+|++..+ ....++.|.|.+++.+|+|.|+|.|.|..+...+..+.|.|+
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 479999999999999999987433 233467899999999999999999999544446788888774
No 156
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.03 E-value=8.8e-10 Score=90.33 Aligned_cols=64 Identities=25% Similarity=0.530 Sum_probs=54.3
Q ss_pred EEEEEEEecCCCCeEEEEecCCce-----eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSDK-----VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~~-----~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
++|.|.+.|.|.|.+.|+|++... ....++.|+|.++..+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N-~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAEN-MVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEc-CCCcEEEEEEEEC
Confidence 479999999999999999997543 233567899999999999999999999 6788888887765
No 157
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.02 E-value=1.9e-09 Score=93.79 Aligned_cols=78 Identities=26% Similarity=0.422 Sum_probs=59.8
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee--------c---CCCcEEEeecCCCCCEEEEEEEEecCCC
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------G---NSPNLTLLMTSDDLAGRYYCKASVMGFP 616 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--------~---~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 616 (1011)
...|.+..+..|+++.|.|.+.|.|. .+.|++.+..... . ..++|+|.+++.+|+|.|+|.|.|..++
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 45577888999999999999999974 9999984332211 1 1247999999999999999999994345
Q ss_pred ceeeEEEEEE
Q psy17146 617 EVGAEATVYL 626 (1011)
Q Consensus 617 ~~s~~~~l~V 626 (1011)
...+++.|.|
T Consensus 83 ~~~~sv~l~~ 92 (92)
T cd04977 83 ESEATVNLKI 92 (92)
T ss_pred cceeEEEEEC
Confidence 5666766653
No 158
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.02 E-value=1.2e-09 Score=89.73 Aligned_cols=66 Identities=24% Similarity=0.372 Sum_probs=56.8
Q ss_pred EEEEEEeecCCCccEEEEEECCeecCCC----cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEE
Q psy17146 321 VRLYCKAEANPSHMKYRWYINDQPVPAA----ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388 (1011)
Q Consensus 321 v~l~C~~~~~p~~~~i~W~k~g~~l~~~----~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 388 (1011)
++|.|.+.|.|.| .+.|+|||.++... .....|.|.+++.+ |+|.|+|.|.|..|..+.+..+.|.
T Consensus 1 ~~l~c~v~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~-D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPP-EIQWYKNGKLISEKNRTKKSGHSLTIKDVTEE-DAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCC-EEEEEECCEECCCCCEEEcCCCEEEECcCCHH-HCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4799999999987 89999999998753 23578999999998 9999999999999988777777663
No 159
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.02 E-value=1.2e-09 Score=91.97 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=52.4
Q ss_pred EEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCC-ceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCcee
Q psy17146 153 LECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDG-RRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYK 224 (1011)
Q Consensus 153 L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~ 224 (1011)
|.|. +.|+|.|+++|+|++..+..+........... ......+.|+|.++..+|+|.|+|.|.|..|.+..
T Consensus 3 i~~~-v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~ 74 (81)
T cd04971 3 IPFT-VRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSK 74 (81)
T ss_pred EEEE-eEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeee
Confidence 6788 78999999999999988876543222211110 11223468999999999999999999999998743
No 160
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.01 E-value=3.2e-09 Score=90.45 Aligned_cols=81 Identities=21% Similarity=0.407 Sum_probs=59.9
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC--CeEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG--SDSVE 720 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G--~~~~~ 720 (1011)
|++++|.|.+.|.|.+ .+.|+++++..............+ .....+.|.|.+++.+|+|.|.|.|+|..+ ..+++
T Consensus 1 Ge~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~s 77 (84)
T cd05861 1 GETITVNCIVQGNEVV-DFSWTYPGKDIGKGIPEVEEVKVP--ATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKK 77 (84)
T ss_pred CCcEEEEEEEECCCcc-EEEEEECCccCCCCceEEEEEecC--CcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEE
Confidence 7899999999999998 999999876532111000011110 123367999999999999999999999887 77888
Q ss_pred EEEEec
Q psy17146 721 IMLKPQ 726 (1011)
Q Consensus 721 ~~l~V~ 726 (1011)
+.|+|.
T Consensus 78 v~i~V~ 83 (84)
T cd05861 78 VNITVH 83 (84)
T ss_pred EEEEEe
Confidence 888874
No 161
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.00 E-value=1.2e-09 Score=89.35 Aligned_cols=62 Identities=23% Similarity=0.419 Sum_probs=52.7
Q ss_pred EEEEEEEecCCCCeEEEEecCCce------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEE
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSDK------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 624 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l 624 (1011)
+.|.|.+.|.|.|.+.|+|++..+ .....+.|.|.++..+|+|.|+|.|.| ..|..+..+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N-~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARN-TIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEEC-CCCcEEEEEEe
Confidence 479999999999999999988543 234567999999999999999999999 67777777765
No 162
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.99 E-value=3.1e-09 Score=89.85 Aligned_cols=69 Identities=25% Similarity=0.462 Sum_probs=57.5
Q ss_pred cCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeC
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 112 (1011)
.|.++++..|+++.|.|.+..+.+.+.|++++.++... ..|+.+... .|.|.+++.+|+|.|+|.+.+.
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~~~~~i~W~~ng~~i~~~-----~~r~~~~~~------~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKSNLARVVWKFDGKVLTPE-----SAKYLLYRD------GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CcceEEEECCCCEEEEEECCCCCCeEEEEECCEECCCC-----CceEEEECC------cEEEeCCCHHHCEEEEEEEEec
Confidence 58899999999999999988777799999999887532 146655322 5999999999999999999874
No 163
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.99 E-value=1.9e-09 Score=89.88 Aligned_cols=67 Identities=30% Similarity=0.546 Sum_probs=55.5
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
|+.+.|.|.+.|.|.|.+.|++++.... ....++|.|..+..+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N-~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASN-AAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEEC-CCCeEEEEEEEEC
Confidence 7889999999999999999998543322 23457899999999999999999999 5777777777764
No 164
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.99 E-value=2.3e-09 Score=93.54 Aligned_cols=89 Identities=27% Similarity=0.381 Sum_probs=63.4
Q ss_pred CCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCC--cccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEE
Q psy17146 34 PQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGP--HRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVS 110 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~--~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 110 (1011)
++++.+.+|++|+|.|.+.+ +.+.+.|++.+..+.. .......+|+.+... ..+.++|+|.+++.+|+|.|+|.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA-SWHELSISISDVSLSDEGQYTCSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC-CCCcEEEEECcCCcccCEEEEEEeE
Confidence 57899999999999999997 6679999976532211 111223467776433 3456799999999999999999998
Q ss_pred eCCCCCcceeeeEEEEEE
Q psy17146 111 TGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 111 ~~~~~~~~~~s~~~~l~V 128 (1011)
... ..+..+.|+|
T Consensus 83 t~~-----~~~~~~~l~v 95 (95)
T cd07701 83 TMP-----VKTSKAYLTV 95 (95)
T ss_pred eec-----CccEEEEEEC
Confidence 732 1245566654
No 165
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.99 E-value=2.2e-09 Score=87.37 Aligned_cols=64 Identities=23% Similarity=0.380 Sum_probs=54.0
Q ss_pred CCcEEEEEEeecCCCccEEEEEECCeecCCCc----CccEEEEeecccccCCcEEEEEEEcCCccceeeEEE
Q psy17146 318 GTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETL 385 (1011)
Q Consensus 318 g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~----~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l 385 (1011)
|+.++|.|.+.|.|.| .++|+|++.++.... ....|.|.++. |+|.|+|.|.|..|..+.++.|
T Consensus 1 G~~v~L~C~a~G~P~P-~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~---d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMP-YVKWMKGGEELTKEDEMPVGRNVLELTNIY---ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCC-EEEEEECCEECCCccceecCccEEEEeccc---cCeeEEEEEEeCCCEEEEEEEE
Confidence 6789999999999998 999999999876532 23578898874 7899999999999988877765
No 166
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.98 E-value=4.1e-09 Score=91.55 Aligned_cols=85 Identities=13% Similarity=0.253 Sum_probs=63.0
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecc-c-----CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEE
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV-G-----SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~-~-----~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 709 (1011)
.+..+.+|+++.|.|.+.+.|.| .|.|++++..+.. + ...++.+... ......|.|.++..+|+|.|+|.
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~-~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L~I~nV~~~D~G~YtC~ 80 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNS-SLQWSNTAQQTLYFGEKRALRDNRIQLVKS---TPTELIISISNVQLSDEGEYTCS 80 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCC-eEEEeccCccEEEeCCeEEEeCCeEEEEeC---CCceEEEEECCCCcccCEEEEEE
Confidence 46779999999999999999999 8999998765321 0 2345544332 22357999999999999999999
Q ss_pred EEcCCCCeEEEEEEEe
Q psy17146 710 VSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 710 a~N~~G~~~~~~~l~V 725 (1011)
|.. .-..++..+|+|
T Consensus 81 ~~t-~~~~~~~~~~~v 95 (95)
T cd05882 81 IFT-MPVRTAKATVTV 95 (95)
T ss_pred EEe-eccccEEEEEEC
Confidence 987 335555555543
No 167
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.98 E-value=1.8e-09 Score=92.18 Aligned_cols=72 Identities=28% Similarity=0.482 Sum_probs=59.9
Q ss_pred EEEcCCCcEEEEEEEecCCCCeEEEEecCCceee-------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 554 VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV-------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 554 ~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~-------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
+....|++++|.|.+.|.|.|.+.|+|++..+.. .....|.|.++..+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N-~~G~~~~~~~v~v 82 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSN-RAGEINATYKVDV 82 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEc-CCccEEEEEEEeC
Confidence 4466799999999999999999999999866532 2236899999999999999999999 5777777777654
No 168
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.97 E-value=1.5e-09 Score=89.67 Aligned_cols=65 Identities=26% Similarity=0.442 Sum_probs=54.8
Q ss_pred EEEEEEEecCCCCeEEEEecCCcee------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
+.|.|.+.|.|.|.+.|+|++..+. ......|.|.++..+|+|.|+|.|.| ..|..+..+.|.|+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N-~~G~~~~~~~l~V~ 71 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASN-SLGSARHTISVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEe-CCceEEEEEEEEEC
Confidence 4799999999999999999975432 23356899999999999999999999 67888888888773
No 169
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.97 E-value=4.5e-09 Score=90.49 Aligned_cols=81 Identities=27% Similarity=0.386 Sum_probs=64.4
Q ss_pred eeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 639 FGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
.+..|+.++|.|.+.+.|.+ .+.|++++..+.. ...+..... ......|.|.++..+|.|.|.|.|.|..|..+
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~-~v~W~k~~~~~~~--~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~ 78 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRP-TITWLKDGKPFKK--EHRIGGYKV---RKKKWTLILESVVPSDSGKYTCIVENKYGSIN 78 (85)
T ss_pred EecCCCcEEEEEEcCCCCCC-eEEEEECCEECcc--cCceeEEEc---cCcEEEEEEeECCcccCEEEEEEEEECCceEE
Confidence 46689999999999999999 8999999988763 222222111 12246899999999999999999999999998
Q ss_pred EEEEEEe
Q psy17146 719 VEIMLKP 725 (1011)
Q Consensus 719 ~~~~l~V 725 (1011)
.++.|.|
T Consensus 79 ~~~~l~v 85 (85)
T cd05729 79 HTYKVDV 85 (85)
T ss_pred EEEEEeC
Confidence 8888764
No 170
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.97 E-value=9.3e-10 Score=89.59 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=53.6
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeec-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSN-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~ 229 (1011)
+.|.|. +.|.|.|++.|+|++..+... .++. .+ ..+|.|.+++.+|+|.|+|.|.|..........+.
T Consensus 1 ~~l~c~-v~g~P~P~v~W~kdg~~l~~~~~~~~----~~------~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPK-VKAFPAPEVIWLKDGLPAAEKCSRYH----VD------GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEee-EEEcCCCeEEEEECCEECCCCCcEEE----eC------CCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 469999 789999999999999876543 2221 11 23799999999999999999999877665555555
Q ss_pred EE
Q psy17146 230 LL 231 (1011)
Q Consensus 230 v~ 231 (1011)
|.
T Consensus 70 ~~ 71 (72)
T cd07702 70 LI 71 (72)
T ss_pred EE
Confidence 53
No 171
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.96 E-value=2.5e-09 Score=91.08 Aligned_cols=67 Identities=31% Similarity=0.484 Sum_probs=55.7
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCC--c-e-----------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEE
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDS--D-K-----------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 624 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~--~-~-----------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l 624 (1011)
|+.++|.|.+.|.|.|.+.|+|++. . . .....++|.|.++..+|+|.|+|.|.| ..|+....+.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N-~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARN-SGGLLRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEec-CCceEEEEEEE
Confidence 7899999999999999999999742 1 1 122346899999999999999999999 67888888887
Q ss_pred EE
Q psy17146 625 YL 626 (1011)
Q Consensus 625 ~V 626 (1011)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 65
No 172
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.96 E-value=2e-09 Score=93.55 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=61.3
Q ss_pred ceEEEcCCCcEEEEEEEec-----CCCCeEEEEecCCceee---------cCCCcEEEeecCCCCCEEEEEEEEecCCCc
Q psy17146 552 YSVQVDRGAGVNLLCDVDG-----NPAPEITWIHEDSDKVV---------GNSPNLTLLMTSDDLAGRYYCKASVMGFPE 617 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g-----~p~p~v~W~k~~~~~~~---------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~ 617 (1011)
....+.+|+.+.|.|.+.+ .|.+.+.|+|++..... ..++.|.|.++..+|+|.|+|.+.| ..+.
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N-~~g~ 85 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRN-STYC 85 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcC-CCcc
Confidence 3566789999999999999 68899999999854321 2357899999999999999999999 5777
Q ss_pred eeeEEEEEE
Q psy17146 618 VGAEATVYL 626 (1011)
Q Consensus 618 ~s~~~~l~V 626 (1011)
....++|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 777777764
No 173
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.96 E-value=2.8e-09 Score=91.51 Aligned_cols=77 Identities=26% Similarity=0.377 Sum_probs=62.5
Q ss_pred cCCceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 634 SHRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
.+....+.+|++++|.|.+.+ .|.+ .+.|++++..+.. +.. ...+.|.|.++..+|+|.|+|.|.|
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~-~i~W~~~~~~~~~----~~~--------~~~~~L~I~~v~~~DsG~Y~C~a~n 73 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAY-TLVWTRVGGGLPS----RAM--------DFNGILTIRNVQLSDAGTYVCTGSN 73 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCc-EEEEEECCCcCCC----ccc--------ccCCEEEECCCCHHHCEEEEEEEec
Confidence 345667899999999999975 6777 9999999876532 111 1136899999999999999999999
Q ss_pred CCCCeEEEEEE
Q psy17146 713 PYGSDSVEIML 723 (1011)
Q Consensus 713 ~~G~~~~~~~l 723 (1011)
.+|..++.+.|
T Consensus 74 ~~g~~~~~~~l 84 (85)
T cd05754 74 MLDTDEATATL 84 (85)
T ss_pred cCCeEeEEEEE
Confidence 99999998876
No 174
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.95 E-value=5.7e-09 Score=86.10 Aligned_cols=78 Identities=22% Similarity=0.454 Sum_probs=61.3
Q ss_pred cEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc-eeEEEE
Q psy17146 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT-YKVARL 228 (1011)
Q Consensus 150 ~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~-~~s~~v 228 (1011)
.++|+|.+.+++|+++|+||||+.++..... ....++.+...++|.|.....+|++.|+|+|.|..+.. ......
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~----~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~ 76 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS----QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQY 76 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcc----cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEE
Confidence 3789999999999999999999999854321 22455567778899999999999999999999998865 234444
Q ss_pred EEE
Q psy17146 229 KLL 231 (1011)
Q Consensus 229 ~v~ 231 (1011)
.|.
T Consensus 77 ~l~ 79 (80)
T cd05885 77 SLD 79 (80)
T ss_pred EEe
Confidence 443
No 175
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.94 E-value=4.1e-09 Score=91.37 Aligned_cols=82 Identities=22% Similarity=0.349 Sum_probs=63.4
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccC--CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS--SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~--~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
....+.+|+.+.|.|.+.+ |.+ .+.|+|++..+.... ..++.... ..|.|.+++.+|+|.|.|.|.|.
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~-~i~W~k~~~~~~~~~~~~~~~~~~~--------~~L~I~~~~~~D~G~Y~C~a~~~ 73 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLA-SVVWLFQGGPLQRKEEPEERLLVTE--------DGLLIRSVSPADAGVYTCQSVEH 73 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCc-eEEEEECCcccccccCcCceEEEcC--------CCEEEccCCHHHCEEEEEEEecC
Confidence 4456889999999999987 777 899999998876432 12333322 45999999999999999999976
Q ss_pred C-CCeEEEEEEEecC
Q psy17146 714 Y-GSDSVEIMLKPQK 727 (1011)
Q Consensus 714 ~-G~~~~~~~l~V~~ 727 (1011)
. +...+++.|.|.+
T Consensus 74 ~~~~~~~~~~l~V~~ 88 (89)
T cd04979 74 GFKQTLATYSLNVLE 88 (89)
T ss_pred ccceeEeEEEEEEec
Confidence 5 4677888888753
No 176
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.94 E-value=5.4e-09 Score=90.73 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=55.1
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCC----ceeeeceeEEEee-ecCCceE--EEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 148 DREIELECISANGKPPAEITWIDGT----GTVMSNVRVTEEA-SVDGRRT--TVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~----~~l~~~~~~~~~~-~~~~~~~--~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
|+.+.|.|. +.|.|.|.|+|+|++ ..+..+....... ...+... ...+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~-~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCK-VYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEE-EecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 678999999 789999999999853 3232211111011 1111000 1136899999999999999999999999
Q ss_pred CceeEEEEEE
Q psy17146 221 RTYKVARLKL 230 (1011)
Q Consensus 221 ~~~~s~~v~v 230 (1011)
....++.+.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 8865555543
No 177
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.93 E-value=5.5e-09 Score=90.56 Aligned_cols=86 Identities=23% Similarity=0.225 Sum_probs=63.0
Q ss_pred cCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeC
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 112 (1011)
+|..+.+.+|++++|.|.+.++.+.+.|+|++..+..... ...|+.... ..|.|.+++.+|+|.|+|.+.+.
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~p~~~i~W~k~~~~~~~~~~--~~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~~~ 73 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKSNLASVVWLFQGGPLQRKEE--PEERLLVTE------DGLLIRSVSPADAGVYTCQSVEH 73 (89)
T ss_pred cceEEEEECCCcEEEEEeCCCCCceEEEEECCcccccccC--cCceEEEcC------CCEEEccCCHHHCEEEEEEEecC
Confidence 4678899999999999999888889999999976543211 123444321 24999999999999999999875
Q ss_pred CCCCcceeeeEEEEEEE
Q psy17146 113 ILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 113 ~~~~~~~~s~~~~l~V~ 129 (1011)
.. ...+....|+|.
T Consensus 74 ~~---~~~~~~~~l~V~ 87 (89)
T cd04979 74 GF---KQTLATYSLNVL 87 (89)
T ss_pred cc---ceeEeEEEEEEe
Confidence 32 334555666664
No 178
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.91 E-value=7.8e-09 Score=87.44 Aligned_cols=69 Identities=23% Similarity=0.411 Sum_probs=56.9
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
|.+..+..|+++.|.|.+.+ |.+ +|.|++||.++..+ ..++.+.. ..|.|.+++.+|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~-~i~W~~ng~~i~~~-~~r~~~~~--------~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLA-RVVWKFDGKVLTPE-SAKYLLYR--------DGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCC-eEEEEECCEECCCC-CceEEEEC--------CcEEEeCCCHHHCEEEEEEEEecc
Confidence 45677999999999999864 667 89999999999753 34565543 469999999999999999999874
No 179
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.91 E-value=9.3e-09 Score=89.77 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=63.0
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecc------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+.+..+.+|++++|.|.+.+.|.+ .+.|++.+..+.. ....++.+... .....+|+|.+++.+|+|.|+|
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~-~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~---~~~~~sL~I~~v~~~DsG~Y~C 79 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRA---SWHELSISISDVSLSDEGQYTC 79 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCce-EEEEeCCCCeEEEEcCcccccCCCEEEEEC---CCCcEEEEECcCCcccCEEEEE
Confidence 356779999999999999999999 8999864322110 12456655332 2234789999999999999999
Q ss_pred EEEcCCCCeEEEEEEEe
Q psy17146 709 SVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V 725 (1011)
.+.+. ...++...|+|
T Consensus 80 ~~~t~-~~~~~~~~l~v 95 (95)
T cd07701 80 SLFTM-PVKTSKAYLTV 95 (95)
T ss_pred EeEee-cCccEEEEEEC
Confidence 99985 44477777654
No 180
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.90 E-value=5.6e-09 Score=87.48 Aligned_cols=73 Identities=22% Similarity=0.404 Sum_probs=54.7
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKL 230 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v 230 (1011)
+.|.|. +.|.|.|.+.|+|++..+..+.+.......++ ..|.|.+++.+|.|.|+|.|.|..|.......+.|
T Consensus 1 ~~L~C~-v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~------~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCH-AEGIPLPRLTWLKNGMDITPKLSKQLTLIANG------SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeE-eeecCCCEEEEEECCEECCCCCCccEEEeCCC------CEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 469999 77999999999999887765432222222222 47999999999999999999999998754444433
No 181
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.88 E-value=1.5e-08 Score=87.28 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=60.1
Q ss_pred CceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecC--CcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEe
Q psy17146 35 QDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALG--PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~--~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 111 (1011)
+++++.+|++|+|.|.+.+. ...+.|++.+..+. ........+|+.+... ....++|+|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~-~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNF-SSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeC-CCCEEEEEECcCCcccCEEEEEEEEc
Confidence 67899999999999999984 56799998874431 1122235678887742 35788999999999999999999976
Q ss_pred C
Q psy17146 112 G 112 (1011)
Q Consensus 112 ~ 112 (1011)
.
T Consensus 84 ~ 84 (95)
T cd05881 84 D 84 (95)
T ss_pred c
Confidence 4
No 182
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.88 E-value=1.1e-08 Score=90.04 Aligned_cols=78 Identities=29% Similarity=0.456 Sum_probs=56.9
Q ss_pred CCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCccc--CCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEE
Q psy17146 34 PQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRN--LSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVS 110 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~--~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 110 (1011)
++++.+.+|++|+|.|.+.+ +.+.+.|++.+..+..... .....|+.+... ....++|+|.+++.+|+|.|+|.+.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNF-SANELSISISNVSLSDEGRYTCSLY 82 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcC-CCCeeEEEEccCCcccCEEEEEEEe
Confidence 46789999999999999986 5678999975432211111 112357777533 3456789999999999999999998
Q ss_pred eC
Q psy17146 111 TG 112 (1011)
Q Consensus 111 ~~ 112 (1011)
..
T Consensus 83 ~~ 84 (95)
T cd05717 83 TM 84 (95)
T ss_pred cC
Confidence 64
No 183
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.88 E-value=6.6e-09 Score=87.71 Aligned_cols=65 Identities=23% Similarity=0.415 Sum_probs=50.8
Q ss_pred EEEEEEEecCCCCeEEEEecCCc--------------eeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSD--------------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~--------------~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
++|.|.+.|.|.|.+.|+|++.. .....+++|.|.++..+|+|.|+|.|.|..+...+..+.|.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 57999999999999999997432 112345789999999999999999999943334466666654
No 184
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.87 E-value=6e-09 Score=87.29 Aligned_cols=65 Identities=22% Similarity=0.404 Sum_probs=47.8
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccC----cCCcEEEEEEEeCCCCc
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE----HHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~----~d~G~Y~C~a~n~~g~~ 222 (1011)
+.|.|. +.|+|.|+++|+|++..+............. .+.|.|.++.. +|+|.|+|.|.|..|..
T Consensus 1 i~l~C~-~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~------~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05733 1 IVIKCE-AKGNPPPTFSWTRNGTHFDPEKDPRVTMKPD------SGTLVIDNMNGGRAEDYEGEYQCYASNELGTA 69 (77)
T ss_pred CEEEee-CcccCCCeEEEEECCeECCCCCCCCEEEeCC------CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence 479999 7899999999999988774422111111111 25788888753 78999999999999976
No 185
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.86 E-value=8e-09 Score=87.66 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=57.2
Q ss_pred CceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 636 RTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
+...+.+|++++|.|.+.+ .+.+ .+.|+|+|..+... ...+.|.|.+++.+|+|.|+|.|.|..
T Consensus 7 p~~~V~~G~~vtL~C~~~~~~~~~-~~~w~k~g~~~~~~--------------~~~~~l~I~~~~~~dsG~Y~C~~~~~~ 71 (83)
T cd05753 7 PSRVVFEGEPLVLRCHGWKNKPVY-KVTYYRDGKAKKYS--------------HSNSNLSIPQATLSDSGSYHCSGIIGS 71 (83)
T ss_pred CcceecCCCCEEEEeeCCCCCcce-EEEEEECCeEcccc--------------CCCceEEECccCHHHCEEEEEEEEeCC
Confidence 3446889999999999864 4455 89999999876421 113689999999999999999999999
Q ss_pred CCe-EEEEEEE
Q psy17146 715 GSD-SVEIMLK 724 (1011)
Q Consensus 715 G~~-~~~~~l~ 724 (1011)
|.. +..+.|+
T Consensus 72 ~~~~s~~~~i~ 82 (83)
T cd05753 72 YDYSSEPVSIT 82 (83)
T ss_pred ceecCCCEEEE
Confidence 843 4455554
No 186
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.86 E-value=1e-08 Score=85.68 Aligned_cols=69 Identities=23% Similarity=0.372 Sum_probs=48.7
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeee--ceeEEEeeecCCceEEEEEEEEEeecc----CcCCcEEEEEEEeCCCCcee
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMS--NVRVTEEASVDGRRTTVKSTLVLTPKK----EHHNTTFTCQAQNTADRTYK 224 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~--~~~~~~~~~~~~~~~~~~~~L~I~~~~----~~d~G~Y~C~a~n~~g~~~~ 224 (1011)
+.|.|+ +.|+|.|.++|+|++..+.. +.++. ... ..++|.|..+. .+|+|.|+|.|.|..|.. .
T Consensus 1 ~~l~C~-~~G~P~P~v~W~k~g~~~~~~~~~~~~--~~~------~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~-~ 70 (77)
T cd05875 1 IIIECE-AKGNPVPTFQWTRNGKFFNVAKDPRVS--MRR------RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA-L 70 (77)
T ss_pred CEEEEe-ccccCCCEEEEEECCEEccCcCCCcEE--EeC------CCceEEEeccCCCCCCCCCEEEEEEEEeccceE-E
Confidence 479999 88999999999999876532 22222 111 12578888764 357999999999999976 3
Q ss_pred EEEEE
Q psy17146 225 VARLK 229 (1011)
Q Consensus 225 s~~v~ 229 (1011)
+..+.
T Consensus 71 s~~~~ 75 (77)
T cd05875 71 SNKIL 75 (77)
T ss_pred EEEEE
Confidence 44443
No 187
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.86 E-value=8.6e-09 Score=86.09 Aligned_cols=72 Identities=19% Similarity=0.358 Sum_probs=48.9
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccC----cCCcEEEEEEEeCCCCceeEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE----HHNTTFTCQAQNTADRTYKVA 226 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~----~d~G~Y~C~a~n~~g~~~~s~ 226 (1011)
+.|.|+ +.|+|.|+++|+|++..+............ ..++|.|..+.. .|+|.|+|.|.|..|... +.
T Consensus 1 ~~l~C~-a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~------~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~-s~ 72 (77)
T cd05874 1 IVIQCE-AKGKPPPSFSWTRNGTHFDIDKDPKVTMKP------NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAV-SN 72 (77)
T ss_pred CEEEee-CcccCCCeEEEEECCeECCCcCCCCEEEeC------CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEE-ee
Confidence 479999 889999999999998876332111111111 124788877654 478999999999999763 33
Q ss_pred EEEE
Q psy17146 227 RLKL 230 (1011)
Q Consensus 227 ~v~v 230 (1011)
.+.|
T Consensus 73 ~~~~ 76 (77)
T cd05874 73 NIVI 76 (77)
T ss_pred EEEE
Confidence 4443
No 188
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.85 E-value=1.2e-08 Score=87.15 Aligned_cols=83 Identities=17% Similarity=0.259 Sum_probs=59.9
Q ss_pred CCcEEEEEEEEecCCC-CeEEEEECCeEecccC-CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEE
Q psy17146 643 GDTARVECSAFSIPPP-EKVTWSYRGEEIGVGS-SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVE 720 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p-~~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~ 720 (1011)
|++++|.|.+.+.+.+ ..+.|.+.++...... ........ .......+.|.|.+++.+|+|.|+|.|+|..|.....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~-~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSL-QEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccc-cccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence 7899999999987643 3789998876542111 11101000 0012346899999999999999999999999999999
Q ss_pred EEEEec
Q psy17146 721 IMLKPQ 726 (1011)
Q Consensus 721 ~~l~V~ 726 (1011)
..|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 988875
No 189
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.84 E-value=1.1e-08 Score=87.69 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=63.0
Q ss_pred ecCCceEEEcCCCcEEEEEEEec-CCCCeEEEEecCCce---eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEE
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDG-NPAPEITWIHEDSDK---VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 623 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g-~p~p~v~W~k~~~~~---~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 623 (1011)
...|....+.+|++++|.|.+.+ .|.+.+.|++++... ....++.|.|.++..+|+|.|+|.|.| ..|.....+.
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n-~~g~~~~~~~ 83 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSN-MLDTDEATAT 83 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEec-cCCeEeEEEE
Confidence 35677888999999999999975 788899999998542 223467999999999999999999999 6777777766
Q ss_pred E
Q psy17146 624 V 624 (1011)
Q Consensus 624 l 624 (1011)
|
T Consensus 84 l 84 (85)
T cd05754 84 L 84 (85)
T ss_pred E
Confidence 5
No 190
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.84 E-value=2.3e-08 Score=86.40 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=59.4
Q ss_pred CceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeCCC
Q psy17146 35 QDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGIL 114 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~ 114 (1011)
..+++.+|++++|.|....+.+.+.|+|++.............|+.... ..|.|.+++.+|+|.|+|.+.+...
T Consensus 4 ~~~~~~eG~~v~L~C~~~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~------~~L~I~~~~~~DsG~Y~C~a~~~~~ 77 (91)
T cd05871 4 KVVYGVENNSTFLECLPKSPQASVKWLFQRGGDQRKEEVKTEERLIHTE------RGLLLRSLQRSDAGVYTCTAVEHSF 77 (91)
T ss_pred eEEEEecCCcEEEEEECCCCCceEEEEEECCCCCccccccccccEEEec------CeEEEeeCChhHCEEEEEEEEccCC
Confidence 3567899999999999766778999998653322111222234655432 2599999999999999999985432
Q ss_pred CCcceeeeEEEEEEEc
Q psy17146 115 GEPAIRSRFATLTVLV 130 (1011)
Q Consensus 115 ~~~~~~s~~~~l~V~~ 130 (1011)
+ .....+.|+|..
T Consensus 78 ~---~~~~~~~l~v~~ 90 (91)
T cd05871 78 S---QTLAKYTLHVIE 90 (91)
T ss_pred e---EEEEEEEEEEec
Confidence 2 233456676653
No 191
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.84 E-value=9.6e-09 Score=85.91 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=51.7
Q ss_pred EEEEEEccCC-CCCcEEEEEeCCceeeeceeEEE-eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE
Q psy17146 151 IELECISANG-KPPAEITWIDGTGTVMSNVRVTE-EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV 225 (1011)
Q Consensus 151 v~L~C~~~~g-~P~~~i~W~k~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s 225 (1011)
+.|.|. +.| .|.+.++|+|++..+....+... ..... ...+.|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 1 ~~l~C~-~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 72 (75)
T cd05750 1 LVLKCE-ATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNK----KKNSELQINKAKLADSGEYTCVVENILGNDTVT 72 (75)
T ss_pred CEEEEE-ccCCCCCceEEEEcCCeeccccCCcceEEEEec----CceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence 469999 556 99999999999888765433211 01111 123689999999999999999999999977443
No 192
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.83 E-value=1.3e-08 Score=87.90 Aligned_cols=78 Identities=14% Similarity=0.275 Sum_probs=60.8
Q ss_pred ceeeecCCcEEEEEEEEec-----CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEE
Q psy17146 637 TQFGIPGDTARVECSAFSI-----PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVS 711 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~-----p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~ 711 (1011)
.+.+..|..+.|.|...+. |.| .+.|+||++++.. .. ..+.. .+.|.|.++..+|+|.|+|.|.
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p-~i~Wyk~~~~i~~--~~-~~~~~-------~~~L~I~~v~~~DsG~YtC~~~ 72 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLP-PVQWYKDCKLLEG--DR-KRFVK-------GSKLLIQNVTEEDAGNYTCKLT 72 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCC-cEEEeECCEECCC--Cc-cEEec-------CCEEEEeeCChhhCEEEEEEEE
Confidence 3567889999999987543 467 8999999999873 22 22222 3699999999999999999999
Q ss_pred cCCCCeEEEEEEEe
Q psy17146 712 NPYGSDSVEIMLKP 725 (1011)
Q Consensus 712 N~~G~~~~~~~l~V 725 (1011)
|.+|.....++..+
T Consensus 73 n~~~~~~~~~t~t~ 86 (92)
T cd05757 73 FTHNGKQYNVTRTI 86 (92)
T ss_pred ecCCCEEEEEEEEE
Confidence 99998776665544
No 193
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.83 E-value=1.3e-08 Score=88.63 Aligned_cols=72 Identities=28% Similarity=0.418 Sum_probs=57.4
Q ss_pred ceeecCCceEEEcCC---CcEEEEEEEecCCCCeEEEEecCCceee-------cCCCcEEEeecC-CCCCEEEEEEEEec
Q psy17146 545 PRFRARPYSVQVDRG---AGVNLLCDVDGNPAPEITWIHEDSDKVV-------GNSPNLTLLMTS-DDLAGRYYCKASVM 613 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G---~~~~l~C~~~g~p~p~v~W~k~~~~~~~-------~~~~~L~I~~v~-~~d~G~Y~C~a~n~ 613 (1011)
|.|...|.++.+.++ +.+.|.|.+.|.|.|.++|+|++..+.. ..++.|.|.++. .+|+|.|+|.|+|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N- 80 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASN- 80 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEc-
Confidence 778888888766554 5799999999999999999999865421 224689998887 4999999999999
Q ss_pred CCCc
Q psy17146 614 GFPE 617 (1011)
Q Consensus 614 ~~~~ 617 (1011)
..|.
T Consensus 81 ~~G~ 84 (91)
T cd04967 81 IVGT 84 (91)
T ss_pred CCCE
Confidence 4444
No 194
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.83 E-value=2.9e-08 Score=86.06 Aligned_cols=87 Identities=26% Similarity=0.429 Sum_probs=64.6
Q ss_pred CCeeecCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCceeee--ceeEEEeeecCCceEEEEEEEEEeeccCcC-Cc
Q psy17146 134 PPRIVQGDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVMS--NVRVTEEASVDGRRTTVKSTLVLTPKKEHH-NT 209 (1011)
Q Consensus 134 ~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~--~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d-~G 209 (1011)
+|.|.......+.+|+.+.|.|. +.+.|+| .|.|..++..+.. ..++.+...... ....++|+|.++...| .|
T Consensus 2 pP~i~~~~s~~~~~G~~~~L~C~-~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~--~g~~S~L~I~~~~~~d~~g 78 (98)
T cd05898 2 PPIISSEQVQYAVRGERGKVKCF-IGSTPPPDRIAWAWKENVLESGTSERYTVERTSTG--SGVLSTLTINNIMEADFQT 78 (98)
T ss_pred CCEEecCceEEEeCCCcEEEEEE-EccCCCCcEEEEEEccccccCCCCCCEEEEEEccC--CCcEEEEEECCCccccCCc
Confidence 56777777888999999999999 5566765 6788887776644 245554443211 1235789999998766 89
Q ss_pred EEEEEEEeCCCCce
Q psy17146 210 TFTCQAQNTADRTY 223 (1011)
Q Consensus 210 ~Y~C~a~n~~g~~~ 223 (1011)
.|.|.|.|..|...
T Consensus 79 ~Y~C~a~N~~G~d~ 92 (98)
T cd05898 79 HYNCTAWNSFGSGT 92 (98)
T ss_pred EEEEEEEeCCccce
Confidence 99999999999873
No 195
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.82 E-value=4.4e-08 Score=83.44 Aligned_cols=83 Identities=20% Similarity=0.412 Sum_probs=57.9
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
|++++|.|. +.+.|.+.+.|+++++..............+ .....++|.|.+++.+|+|.|.|.|.|..+....+..
T Consensus 1 Ge~~~l~C~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~s 77 (84)
T cd05861 1 GETITVNCI-VQGNEVVDFSWTYPGKDIGKGIPEVEEVKVP--ATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKK 77 (84)
T ss_pred CCcEEEEEE-EECCCccEEEEEECCccCCCCceEEEEEecC--CcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEE
Confidence 788999999 6788999999998765432111100001111 1223579999999999999999999998775545777
Q ss_pred EEEEEE
Q psy17146 228 LKLLVK 233 (1011)
Q Consensus 228 v~v~v~ 233 (1011)
+.|+|.
T Consensus 78 v~i~V~ 83 (84)
T cd05861 78 VNITVH 83 (84)
T ss_pred EEEEEe
Confidence 777664
No 196
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.80 E-value=1.7e-08 Score=85.66 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=60.6
Q ss_pred CcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccc-eeeEEEEE
Q psy17146 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKS-EDSETLDV 387 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~-~~s~~l~V 387 (1011)
...+.+|+.++|.|.+........+.|||+|..+........|.|.+++.+ |+|.|+|.+.|..|.. +..+.|+|
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~-dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSHSNSNLSIPQATLS-DSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccCCCceEEECccCHH-HCEEEEEEEEeCCceecCCCEEEEC
Confidence 457899999999999865544458999999998876556789999999998 9999999999988754 45555543
No 197
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.80 E-value=2.6e-08 Score=85.19 Aligned_cols=81 Identities=14% Similarity=0.222 Sum_probs=57.3
Q ss_pred CCcEEEEEEccCCC--CCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE
Q psy17146 148 DREIELECISANGK--PPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV 225 (1011)
Q Consensus 148 g~~v~L~C~~~~g~--P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s 225 (1011)
|+.+.|.|. +.+. |.+.++|++++..+.......... .........++|.|.+++.+|+|.|+|.|.|..+....+
T Consensus 1 Ge~~~L~C~-~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCT-VLTELNEGVDFQWTYPGKKRGRGKSMVTRQ-SLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEE-EEeCCCccEEEEEecCCcccCCceEeeccc-ccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence 788999999 6777 889999998876553321111000 011122345789999999999999999999999887655
Q ss_pred EEEEE
Q psy17146 226 ARLKL 230 (1011)
Q Consensus 226 ~~v~v 230 (1011)
+.+.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 55543
No 198
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.79 E-value=4e-08 Score=89.08 Aligned_cols=82 Identities=24% Similarity=0.324 Sum_probs=62.7
Q ss_pred eecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 31 AMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 31 ~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
...|..+.+.+|++|+|.|.+.. ....+.|+|....-. ........+|+.+..+...+.++|+|.+++.+|
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 34578899999999999999997 566899998642100 000112347888876666788999999999999
Q ss_pred CceEEEEEEeC
Q psy17146 102 DARYQCQVSTG 112 (1011)
Q Consensus 102 ~G~Y~C~~~~~ 112 (1011)
+|.|.|.+.+.
T Consensus 82 sG~Y~C~~~~~ 92 (109)
T cd04983 82 SAVYFCALSES 92 (109)
T ss_pred CEEEEEEEecC
Confidence 99999999864
No 199
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.77 E-value=7.7e-08 Score=82.48 Aligned_cols=90 Identities=22% Similarity=0.255 Sum_probs=71.5
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
..+.|.+|+.+.|.|.+++.|+|..+.|.+++..+...... +....+.......+.|++..+..+|.|.|+|.|.|..+
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~-~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDH-YVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccc-eeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 45568999999999999999999449999999887643332 22222212234678999999999999999999999999
Q ss_pred CeEEEEEEEec
Q psy17146 716 SDSVEIMLKPQ 726 (1011)
Q Consensus 716 ~~~~~~~l~V~ 726 (1011)
+.+.++.|.|+
T Consensus 90 ~~s~tF~l~v~ 100 (101)
T cd05860 90 SASVTFNVYVN 100 (101)
T ss_pred eEEEEEEEEEe
Confidence 99999998874
No 200
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.77 E-value=2.8e-08 Score=83.17 Aligned_cols=69 Identities=12% Similarity=0.278 Sum_probs=50.5
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeece----eEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNV----RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV 225 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~----~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s 225 (1011)
+.|+|.+..+.|.+.++|+|++..+.... ++.... . ...+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~--~----~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~ 73 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRK--K----KKSSELQISKASLADNGEYKCMVSSKLGNDSVT 73 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEe--C----CcEEEEEECcCCcccCEEEEEEEEeCCCceeEE
Confidence 47999955567889999999988774321 111111 0 123689999999999999999999999976443
No 201
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.75 E-value=7.7e-08 Score=81.84 Aligned_cols=81 Identities=36% Similarity=0.508 Sum_probs=60.8
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKL 230 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v 230 (1011)
+.|+|.+.+++|.+.++|+|++..+..+ ........++..+...+.|.|.....+|.|.|+|.|.|........+.++|
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGA-TYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCc-eeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 6899996667899999999998876543 222223334455666788999998899999999999998776666666666
Q ss_pred EE
Q psy17146 231 LV 232 (1011)
Q Consensus 231 ~v 232 (1011)
.|
T Consensus 81 ~v 82 (82)
T cd05759 81 DV 82 (82)
T ss_pred cC
Confidence 43
No 202
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.75 E-value=4e-08 Score=83.33 Aligned_cols=79 Identities=29% Similarity=0.514 Sum_probs=61.7
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+|.|..+. ..+.+|+.++|.|.+.+.|.+ .+.|++++..+.... ..|.|.++..+|.|.|+|
T Consensus 1 kP~l~~~~-~~v~~g~~~~l~C~~~~~p~~-~~~w~~~~~~~~~~~----------------~~~~~~~~~~~~~g~y~C 62 (80)
T PF13895_consen 1 KPVLSSSP-QSVEEGDSVTLTCSVSGNPPP-QVQWYKNGSPINSSQ----------------NGLFIPNVSPEDSGNYTC 62 (80)
T ss_dssp --EEEEES-SEEETTSEEEEEEEEESSSSS-EEEEEETTEEEEEES----------------SEEEESSEEGGGTEEEEE
T ss_pred CcEEEccc-eEEeCCCcEEEEEEEEcccce-eeeeeeeeeeeeeee----------------eeeeeeeeccccCEEEEE
Confidence 36666544 568999999999999998887 999999998876211 127788899999999999
Q ss_pred EEEcCCC-CeEEEEEEEe
Q psy17146 709 SVSNPYG-SDSVEIMLKP 725 (1011)
Q Consensus 709 ~a~N~~G-~~~~~~~l~V 725 (1011)
.|.|..| ..+..+.|+|
T Consensus 63 ~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 63 RASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEeCCCCeEeeeEEeeC
Confidence 9999665 5667777764
No 203
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.73 E-value=1.1e-07 Score=81.83 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=59.6
Q ss_pred eeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
.+.+.+|+.+.|.|. +.+.|.+.+.|+|++..+........... ......|.|.++..+|.|.|.|.+.|..|.
T Consensus 3 ~~~~~~G~~~~l~C~-~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~ 76 (85)
T cd05729 3 LHAVPAGSTVRLKCP-ASGNPRPTITWLKDGKPFKKEHRIGGYKV-----RKKKWTLILESVVPSDSGKYTCIVENKYGS 76 (85)
T ss_pred eeEecCCCcEEEEEE-cCCCCCCeEEEEECCEECcccCceeEEEc-----cCcEEEEEEeECCcccCEEEEEEEEECCce
Confidence 345678999999999 67899999999999877654332211111 112357999999999999999999999887
Q ss_pred ceeEEEEEE
Q psy17146 222 TYKVARLKL 230 (1011)
Q Consensus 222 ~~~s~~v~v 230 (1011)
. +..+.|
T Consensus 77 ~--~~~~~l 83 (85)
T cd05729 77 I--NHTYKV 83 (85)
T ss_pred E--EEEEEE
Confidence 5 444444
No 204
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.73 E-value=9.5e-08 Score=83.95 Aligned_cols=85 Identities=13% Similarity=0.183 Sum_probs=61.8
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecc------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEE
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 709 (1011)
.+..+.+|++++|.|.+.+.+.+ .+.|++.+..+.. ....+|.+... ......|+|.+++.+|+|.|+|.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNS-SLQWSNPNQQTLYFNDKRALRDNRIQLVNF---SANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCc-eEEEeCCCCcEEEeccccccccCcEEEEcC---CCCeeEEEEccCCcccCEEEEEE
Confidence 45678999999999999998888 8999863322110 12346655322 22346899999999999999999
Q ss_pred EEcCCCCeEEEEEEEe
Q psy17146 710 VSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 710 a~N~~G~~~~~~~l~V 725 (1011)
+.+... .++++.|+|
T Consensus 81 ~~~~~~-~~~~~~~~v 95 (95)
T cd05717 81 LYTMPV-QTAKATVTV 95 (95)
T ss_pred EecCCC-ceEEEEEEC
Confidence 998753 467766654
No 205
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.73 E-value=4.5e-08 Score=84.44 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=56.2
Q ss_pred eeecCCcEEEEEEEEecCCCCeEEEEECCeEecccC------------CCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 639 FGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS------------SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~------------~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+.+|++|+|.|.+.+.+.+ .+.|+++++....+. ..++..... ........|+|.+++.+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~-~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~-~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRN-LWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCc-EEEEEECCcEEccCcCCEEEEecccccCCCCceecc-cCCCCeEEEEECCCCHHHCEEE
Confidence 46789999999999999888 999998774432111 222322221 1122356899999999999999
Q ss_pred EEEEEcCCCCe
Q psy17146 707 NCSVSNPYGSD 717 (1011)
Q Consensus 707 ~C~a~N~~G~~ 717 (1011)
.|.|.|..+..
T Consensus 81 ~C~v~~~~~~~ 91 (94)
T cd07690 81 ICEVEDKKEEV 91 (94)
T ss_pred EEEECCccceE
Confidence 99999988764
No 206
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.73 E-value=9.3e-08 Score=86.25 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=59.9
Q ss_pred cCCceeEEecCcEEEEEEEcCC-----CCeeEEeeCC---------------eecCCcccCCCCcceEEeecCCCceeEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKDD---------------FALGPHRNLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~~---------------~~l~~~~~~~~~~r~~i~~~~~~~~~~L 92 (1011)
.+..+.+..|++|+|+|.+... ...+.|.+.. .... ...-...+|+.+.++...++.+|
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~-~~~~~f~~Rv~f~g~~~~~daSI 82 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYI-DDVGPFKERIEWVGNPSRKDGSI 82 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceec-ccccCccCceEEeCCCCcCeeEE
Confidence 3577899999999999999863 2389994421 1110 00112235999988888889999
Q ss_pred EEeecccCCCceEEEEEEeCC
Q psy17146 93 EIYPVMLDDDARYQCQVSTGI 113 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~ 113 (1011)
.|.+++.+|+|.|+|.+.+..
T Consensus 83 ~I~nv~~sD~G~Y~C~v~n~p 103 (116)
T cd05879 83 VIHNLDYTDNGTFTCDVKNPP 103 (116)
T ss_pred EEccCCcccCEEEEEEEEcCC
Confidence 999999999999999999853
No 207
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.72 E-value=5.8e-08 Score=83.81 Aligned_cols=77 Identities=10% Similarity=0.159 Sum_probs=57.0
Q ss_pred eeecCCCcEEEEEEccCC----CCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 143 LYTTEDREIELECISANG----KPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 143 ~~v~eg~~v~L~C~~~~g----~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
..+.+|+.+.|.|....+ +|.|.+.|+|++..+....... ...+.|.|.++..+|+|.|+|.|.|.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~----------~~~~~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF----------VKGSKLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE----------ecCCEEEEeeCChhhCEEEEEEEEec
Confidence 356789999999974333 3678999999998775432221 12358999999999999999999999
Q ss_pred CCCceeEEEEE
Q psy17146 219 ADRTYKVARLK 229 (1011)
Q Consensus 219 ~g~~~~s~~v~ 229 (1011)
.+.........
T Consensus 75 ~~~~~~~~t~t 85 (92)
T cd05757 75 HNGKQYNVTRT 85 (92)
T ss_pred CCCEEEEEEEE
Confidence 88764443333
No 208
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.71 E-value=2.9e-08 Score=85.17 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=57.1
Q ss_pred ceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 637 TQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
...+.+|+.+.|.|.. .|.|.+ .|.|++++.++....+.+..+.. ..+.|.|.+++.+|+|.|+|.|+|...
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p-~~~W~k~~~~~~~~~d~r~~~~~------~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDL-SYRWLLNEFPNFIPEDGRRFVSQ------TNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCC-EEEEEECCcccccccCCCeEEeC------CCCcEEEeecCHhhCceeEEEEEeccc
Confidence 4568899999999964 577888 99999998875322233333322 247999999999999999999999986
Q ss_pred Ce
Q psy17146 716 SD 717 (1011)
Q Consensus 716 ~~ 717 (1011)
..
T Consensus 85 ~~ 86 (96)
T cd05727 85 TK 86 (96)
T ss_pred CC
Confidence 54
No 209
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.71 E-value=3.9e-08 Score=84.81 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=54.0
Q ss_pred eeEEecCcEEEEEEEcC-CCCeeEEeeCCeec--CCc------ccCCCCcceEEeecC-CCceeEEEEeecccCCCceEE
Q psy17146 37 QTAVVGSRVTLPCRVID-KTGVLQWTKDDFAL--GPH------RNLSGFDRYAMIGSD-EEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 37 ~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l--~~~------~~~~~~~r~~i~~~~-~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
+.+.+|++|+|+|...+ +.+.+.|++++... +.. .......|+.+..+. ..+.++|+|.+++.+|+|.|+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 56889999999999986 56789999776322 100 011123455444322 456789999999999999999
Q ss_pred EEEEeC
Q psy17146 107 CQVSTG 112 (1011)
Q Consensus 107 C~~~~~ 112 (1011)
|.+.+.
T Consensus 82 C~v~~~ 87 (94)
T cd07690 82 CEVEDK 87 (94)
T ss_pred EEECCc
Confidence 999874
No 210
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.70 E-value=6.6e-08 Score=81.98 Aligned_cols=79 Identities=28% Similarity=0.522 Sum_probs=61.4
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEE
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 624 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l 624 (1011)
|.+...+ ..+.+|+.++|.|.+.+.|.+.+.|++++..+....+ .|.|.++..+|+|.|+|.|.+...+..+..++|
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN-GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV 78 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS-EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee-eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence 4444444 5588999999999999999999999998755553333 388899999999999999999544566777777
Q ss_pred EE
Q psy17146 625 YL 626 (1011)
Q Consensus 625 ~V 626 (1011)
.|
T Consensus 79 ~V 80 (80)
T PF13895_consen 79 TV 80 (80)
T ss_dssp EE
T ss_pred eC
Confidence 65
No 211
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.70 E-value=9.7e-08 Score=82.46 Aligned_cols=80 Identities=18% Similarity=0.426 Sum_probs=59.9
Q ss_pred ceeeecCCcEEEEEEEEecCCCCeEEEEECCe--Eecc--cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEE-
Q psy17146 637 TQFGIPGDTARVECSAFSIPPPEKVTWSYRGE--EIGV--GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVS- 711 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~--~l~~--~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~- 711 (1011)
.+.+.+|+.++|.|.. +.|.| .+.|+|.+. .... ....++.... +.|.|.+++.+|+|.|+|.|.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p-~v~Wykq~~g~~~~~~~~~~~r~~~~~--------~~L~I~~~~~~DsG~Y~C~a~~ 74 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQA-SVKWLFQRGGDQRKEEVKTEERLIHTE--------RGLLLRSLQRSDAGVYTCTAVE 74 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCc-eEEEEEECCCCCccccccccccEEEec--------CeEEEeeCChhHCEEEEEEEEc
Confidence 3457889999999996 57888 899998432 2211 1233444322 569999999999999999998
Q ss_pred cCCCCeEEEEEEEec
Q psy17146 712 NPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 712 N~~G~~~~~~~l~V~ 726 (1011)
|..|...+.++|.|.
T Consensus 75 ~~~~~~~~~~~l~v~ 89 (91)
T cd05871 75 HSFSQTLAKYTLHVI 89 (91)
T ss_pred cCCeEEEEEEEEEEe
Confidence 688878888888874
No 212
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.68 E-value=8.5e-08 Score=76.76 Aligned_cols=63 Identities=27% Similarity=0.509 Sum_probs=51.5
Q ss_pred cCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
+|++++|.|.+.+.|.+ .+.|++++..+. . ..... .....|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~--~--~~~~~------~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVP-NITWLKDGKPLP--E--SNRLS------ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCC-eEEEEECCEECC--C--CCEEe------cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 48899999999888888 899999998876 1 11211 1246899999999999999999999876
No 213
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.67 E-value=5.9e-08 Score=83.46 Aligned_cols=80 Identities=14% Similarity=0.252 Sum_probs=58.3
Q ss_pred eeeecCCcEEEEEEE-Ee----cCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 638 QFGIPGDTARVECSA-FS----IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~-~g----~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
+.+..|....|.|.- .+ .+.| +++|+||++++.. ...++....+ .+.|.|.++..+|+|.|+|+|.|
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~-~v~WYKd~~~l~~-~~~~~~~~~~------~~~L~I~~v~~~D~G~YtC~~~~ 76 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDV-ELQWYKDSVLLDK-DNEKFYSLKG------STYLHIIDVSLNDSGYYTCKLQF 76 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCC-cEEEccCCEECcC-CCcceEecCC------CCEEEEEEcChhhCEEEEEEEEE
Confidence 456788999999972 23 3556 8999999999874 2333333221 25799999999999999999999
Q ss_pred CCCCe----EEEEEEEe
Q psy17146 713 PYGSD----SVEIMLKP 725 (1011)
Q Consensus 713 ~~G~~----~~~~~l~V 725 (1011)
.+|.. ++.+.|.|
T Consensus 77 ~~~g~~y~vtr~~~l~v 93 (95)
T cd05897 77 THEGKKYNITRIIKLRI 93 (95)
T ss_pred eeCCEEEEEEEEEEEEE
Confidence 98855 45555544
No 214
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.66 E-value=6.9e-08 Score=82.89 Aligned_cols=74 Identities=15% Similarity=0.265 Sum_probs=56.3
Q ss_pred CeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCc-eEE-EEEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 141 DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGR-RTT-VKSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~-~~~-~~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
+...+.+|+.+.|.|....|.|.+.+.|+|++..+... .+.| .+. ..+.|.|.+++.+|+|.|+|.|.|.
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~--------~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIP--------EDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccc--------cCCCeEEeCCCCcEEEeecCHhhCceeEEEEEec
Confidence 35667899999999987899999999999987643210 0111 111 1358999999999999999999998
Q ss_pred CCCc
Q psy17146 219 ADRT 222 (1011)
Q Consensus 219 ~g~~ 222 (1011)
....
T Consensus 83 ~~~~ 86 (96)
T cd05727 83 SSTK 86 (96)
T ss_pred ccCC
Confidence 6544
No 215
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.64 E-value=1.5e-07 Score=85.18 Aligned_cols=81 Identities=25% Similarity=0.321 Sum_probs=59.1
Q ss_pred eecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCc------------ccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 31 AMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPH------------RNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 31 ~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~------------~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
...|..+.+.+|++|+|.|.+......+.|||....-... ..-...+|+.+.... ...++|+|.+++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~~~ 80 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTSGHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPS-LTRSSLTIKSAE 80 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECCCCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcC-CCccEEEECCCC
Confidence 3567889999999999999998855689999975321000 001123566665433 367899999999
Q ss_pred cCCCceEEEEEEeC
Q psy17146 99 LDDDARYQCQVSTG 112 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~ 112 (1011)
.+|+|.|.|.+.+.
T Consensus 81 ~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 81 PEDSAVYLCASSLG 94 (110)
T ss_pred hhhCEEEEEEeeCC
Confidence 99999999999763
No 216
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.61 E-value=9.6e-08 Score=81.84 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=59.5
Q ss_pred CceeeecCCcEEEEEE-EEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE-EEEEEEEcC
Q psy17146 636 RTQFGIPGDTARVECS-AFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG-VYNCSVSNP 713 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~-~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G-~Y~C~a~N~ 713 (1011)
....+.+|+.+.|.|. ..|.|.| .|.|++++..... .+.|+.+.. .+.|.|.+++.+|+| .|.|.|+|.
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P-~i~W~~~~~~~i~-~~~Ri~~~~-------~GnL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPL-RIYWMNSDLLHIT-QDERVSMGQ-------NGNLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCC-EEEEECCCCcccc-ccccEEECC-------CceEEEEEEehhhCCCCeEEEEEcc
Confidence 4567899999999997 6999999 9999988765433 456666544 379999999999999 899999999
Q ss_pred CCCe
Q psy17146 714 YGSD 717 (1011)
Q Consensus 714 ~G~~ 717 (1011)
....
T Consensus 82 ~~~~ 85 (95)
T cd05845 82 GLRT 85 (95)
T ss_pred cccc
Confidence 7543
No 217
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.61 E-value=3.2e-07 Score=83.84 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=58.4
Q ss_pred cCCceeEEecCcEEEEEEEcCCC-----CeeEEeeCCee------cCCc--------ccCCCCcceEEeecCCCceeEEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT-----GVLQWTKDDFA------LGPH--------RNLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~-----~~v~W~k~~~~------l~~~--------~~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
.|..+.+.+|++|+|+|.+.... ..+.|++.... +... ..-...+|+.+..+...++++|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 37788999999999999997532 36999874321 1000 01112257777766666788999
Q ss_pred EeecccCCCceEEEEEEeCC
Q psy17146 94 IYPVMLDDDARYQCQVSTGI 113 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~ 113 (1011)
|.+++.+|+|.|.|.+.+..
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~ 103 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPP 103 (116)
T ss_pred EeeCCcccCEEEEEEEEeCC
Confidence 99999999999999998753
No 218
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.60 E-value=4.6e-07 Score=75.06 Aligned_cols=81 Identities=31% Similarity=0.468 Sum_probs=61.8
Q ss_pred cEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEE
Q psy17146 150 EIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229 (1011)
Q Consensus 150 ~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~ 229 (1011)
.+.|.|.+.+++|.+.|+|||++.++...... ....+..+...++|.|.....+|+..|+|+|.|..-.. ......
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~---~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~-~~~~~~ 76 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGKSTV---EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKD-LQTQRY 76 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCcccc---eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCC-ceeeEE
Confidence 36899999999999999999999888654221 11233346667899999999999999999999987543 566666
Q ss_pred EEEEe
Q psy17146 230 LLVKY 234 (1011)
Q Consensus 230 v~v~~ 234 (1011)
|.|.+
T Consensus 77 L~V~y 81 (82)
T cd05883 77 LEVQY 81 (82)
T ss_pred EEEEE
Confidence 66654
No 219
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.58 E-value=2.3e-07 Score=81.92 Aligned_cols=79 Identities=19% Similarity=0.107 Sum_probs=56.6
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeec-----CCcccC--------CCCcceEEeecCCCceeEEEEe
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFAL-----GPHRNL--------SGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l-----~~~~~~--------~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
+++++.+..+.+|++|+|.|..... ...+.|+|..... ..+... ...+|..+..++ +|.|+
T Consensus 1 ~tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng-----SL~I~ 75 (105)
T cd05774 1 LTIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG-----SLLIQ 75 (105)
T ss_pred CeEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC-----cEEEe
Confidence 3567788889999999999987542 3389999974221 111111 123577765433 89999
Q ss_pred ecccCCCceEEEEEEeCC
Q psy17146 96 PVMLDDDARYQCQVSTGI 113 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~ 113 (1011)
+++.+|+|.|+|.+.+..
T Consensus 76 ~v~~~D~G~Y~~~v~~~~ 93 (105)
T cd05774 76 NVTQKDTGFYTLQTITTN 93 (105)
T ss_pred cCCcccCEEEEEEEEeCC
Confidence 999999999999998864
No 220
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.58 E-value=8e-07 Score=76.15 Aligned_cols=82 Identities=30% Similarity=0.539 Sum_probs=66.5
Q ss_pred ceeeecCCcEEEEEEEEecCCCCeEEEEEC-CeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 637 TQFGIPGDTARVECSAFSIPPPEKVTWSYR-GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
...+..|+++.|.|.+.+.+.+ .+.|+++ +..+. ...++..... .....|.|.++...|+|.|+|.+.|..|
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~v~--~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~v~~~~~ 75 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPP-EVTWYKQGGKLLA--ESGRFSVSRS----GSNSTLTISNVTPEDSGTYTCAATNSSG 75 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCC-eEEEEECCCEEcC--CCCcEEEEEc----CCeeEEEEEeeccccCeEEEEEEEcCCC
Confidence 4567889999999999998777 9999998 87775 3445555442 1157899999999999999999999999
Q ss_pred CeEEEEEEEe
Q psy17146 716 SDSVEIMLKP 725 (1011)
Q Consensus 716 ~~~~~~~l~V 725 (1011)
.....+.|.|
T Consensus 76 ~~~~~~~l~V 85 (86)
T smart00410 76 SASSTTTLTV 85 (86)
T ss_pred eEEEEEEEEE
Confidence 8887777765
No 221
>smart00409 IG Immunoglobulin.
Probab=98.58 E-value=8e-07 Score=76.15 Aligned_cols=82 Identities=30% Similarity=0.539 Sum_probs=66.5
Q ss_pred ceeeecCCcEEEEEEEEecCCCCeEEEEEC-CeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 637 TQFGIPGDTARVECSAFSIPPPEKVTWSYR-GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 637 ~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
...+..|+++.|.|.+.+.+.+ .+.|+++ +..+. ...++..... .....|.|.++...|+|.|+|.+.|..|
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~v~--~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~v~~~~~ 75 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPP-EVTWYKQGGKLLA--ESGRFSVSRS----GSNSTLTISNVTPEDSGTYTCAATNSSG 75 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCC-eEEEEECCCEEcC--CCCcEEEEEc----CCeeEEEEEeeccccCeEEEEEEEcCCC
Confidence 4567889999999999998777 9999998 87775 3445555442 1157899999999999999999999999
Q ss_pred CeEEEEEEEe
Q psy17146 716 SDSVEIMLKP 725 (1011)
Q Consensus 716 ~~~~~~~l~V 725 (1011)
.....+.|.|
T Consensus 76 ~~~~~~~l~V 85 (86)
T smart00409 76 SASSTTTLTV 85 (86)
T ss_pred eEEEEEEEEE
Confidence 8887777765
No 222
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.57 E-value=2.2e-07 Score=80.63 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=62.1
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
|.+...|. ..|.+|++|+|.|....+...+.|+|+|....... .........|.|.+|+.+|+|.|+|
T Consensus 3 P~L~a~p~-~vV~~G~~VtL~C~~~~~~~~f~l~k~g~~~~~~~-----------~~~~~~~~~f~i~~v~~~~~G~Y~C 70 (91)
T cd05751 3 PSLWAEPS-SVVPLGKPVTLRCQGPYGAVEYRLYREGSTFAVKK-----------PPEPQNKAKFFIPSMKREHAGRYRC 70 (91)
T ss_pred CEEEecCC-CccCCCCcEEEEEecCCCCCEEEEEECCCCccccc-----------cCCCceeEEEEccCCChhHCEEEEE
Confidence 55667775 47889999999999987777899999986542211 0112344579999999999999999
Q ss_pred EEEeCCCCCcceeeeEEEEEE
Q psy17146 108 QVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 108 ~~~~~~~~~~~~~s~~~~l~V 128 (1011)
+..+.. ......|..+.|.|
T Consensus 71 ~~~~~~-~~~S~~Sd~lel~V 90 (91)
T cd05751 71 YYRSGV-ALWSEPSDPLELVV 90 (91)
T ss_pred EEECCC-CccCCCCCcEEEEe
Confidence 998753 11223455555554
No 223
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.56 E-value=3.6e-07 Score=76.71 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=54.6
Q ss_pred CceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEe
Q psy17146 35 QDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 111 (1011)
+.+++.+|++++|+|......+.+.|++++..+. .++|+..... .|.|.+++.+|+|.|+|.+.-
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~~A~v~W~~ng~~l~------~~~r~~~~~~------GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSNLASPVWLFNGTPLN------AQFSYRVGTD------GLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred eEEEEecCCCEEEECCCCCCCccEEEEECCcccC------CCcceEEeCC------CCEEEECCHhhCEEEEEEEec
Confidence 5789999999999999999888999999997763 2356665543 388999999999999999864
No 224
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.55 E-value=7.9e-07 Score=76.32 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=62.5
Q ss_pred CeeeecCCCcEEEEEEccCCCCCcE-EEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 141 DTLYTTEDREIELECISANGKPPAE-ITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g~P~~~-i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
..+++.+|+.+.|.|. ..++|+|+ +.|.+++..+............. ......+.|++..++.+|+|.|+|.|.|..
T Consensus 11 ~~~~v~~gE~~~L~V~-ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~-~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~ 88 (101)
T cd05860 11 TTIFVNAGENLDLIVE-YEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNE-SNNRYVSELHLTRLKGTEGGTYTFLVSNSD 88 (101)
T ss_pred ceEEEECCCCEEEEEE-EEeCCCCeeeEEEcCCcccCccccceeEEecc-CceEEEEEEEEeecChhhCcEEEEEEECCC
Confidence 4678899999999999 88999998 99999987664422211112111 223356899999999999999999999998
Q ss_pred CCceeE
Q psy17146 220 DRTYKV 225 (1011)
Q Consensus 220 g~~~~s 225 (1011)
...+.+
T Consensus 89 ~~~s~t 94 (101)
T cd05860 89 ASASVT 94 (101)
T ss_pred CeEEEE
Confidence 866333
No 225
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.54 E-value=3.2e-05 Score=82.72 Aligned_cols=80 Identities=20% Similarity=0.208 Sum_probs=60.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEEcC-CcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCC--CeeEEeeCC
Q psy17146 437 PNLTLLMTSDDLAGRYYCKASVMG-FPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPP--EKVTWSYRG 513 (1011)
Q Consensus 437 ~~L~I~~v~~~d~G~Y~C~a~n~~-~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~ 513 (1011)
..|.|..++..++|.|+-...+.. .......++|....+|. .......+.+|+...-.|.+...-++ ..+.|++||
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Ps-vsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPL-VDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCc-ccccCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 449999999999999998776632 22334556666566666 44455667899999999999988444 489999999
Q ss_pred eEee
Q psy17146 514 EEIG 517 (1011)
Q Consensus 514 ~~i~ 517 (1011)
.++.
T Consensus 277 ~~V~ 280 (486)
T PHA03273 277 KEVD 280 (486)
T ss_pred eecc
Confidence 9885
No 226
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.54 E-value=6.1e-07 Score=81.52 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=57.2
Q ss_pred cCCceeEEecCcEEEEEEEcCC-----CCeeEEeeC----Cee--cC---Cc----ccCCCCcceEEeecCCCceeEEEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKD----DFA--LG---PH----RNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~----~~~--l~---~~----~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
.|..+.+.+|++|+|.|.+... ...+.|++. +.+ +. .. ..-...+|+.+..+...++++|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 3678999999999999998742 226999752 111 10 00 011112577766665677889999
Q ss_pred eecccCCCceEEEEEEeCC
Q psy17146 95 YPVMLDDDARYQCQVSTGI 113 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~ 113 (1011)
.+++.+|+|.|+|.+.+..
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~ 102 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPP 102 (115)
T ss_pred eeCChhhCEEEEEEEEeCC
Confidence 9999999999999999753
No 227
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.54 E-value=2.7e-07 Score=79.07 Aligned_cols=73 Identities=19% Similarity=0.353 Sum_probs=56.9
Q ss_pred CeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceE-EEEEEEEEeeccCcCCc-EEEEEEEeC
Q psy17146 141 DTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRT-TVKSTLVLTPKKEHHNT-TFTCQAQNT 218 (1011)
Q Consensus 141 ~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~d~G-~Y~C~a~n~ 218 (1011)
+.+.+.||+.+.|.|....|.|.|.|.|++++..... .+.|.. ...+.|.|.+++.+|.| .|.|.|.|.
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~---------~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT---------QDERVSMGQNGNLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc---------ccccEEECCCceEEEEEEehhhCCCCeEEEEEcc
Confidence 4678899999999998679999999999987654332 122222 22368999999999999 799999998
Q ss_pred CCCc
Q psy17146 219 ADRT 222 (1011)
Q Consensus 219 ~g~~ 222 (1011)
....
T Consensus 82 ~~~~ 85 (95)
T cd05845 82 GLRT 85 (95)
T ss_pred cccc
Confidence 6543
No 228
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.53 E-value=4.4e-07 Score=78.05 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=52.5
Q ss_pred CceeEEecCcEEEEEEE------------cCCCCeeEEeeCCeecCCcccCCCC-cceEEeecCCCceeEEEEeecccCC
Q psy17146 35 QDQTAVVGSRVTLPCRV------------IDKTGVLQWTKDDFALGPHRNLSGF-DRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v------------~~~~~~v~W~k~~~~l~~~~~~~~~-~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
....+.+||+|.|.|.. ......+.|+|++..+.....+... .|....++ .|.|.++..+|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~------~Lwf~Pa~~eD 81 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED------SIWFRPAELQD 81 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC------EEEEEeCChhh
Confidence 45788999999999997 2223379999997555433222211 25554332 79999999999
Q ss_pred CceEEEEEEeCC
Q psy17146 102 DARYQCQVSTGI 113 (1011)
Q Consensus 102 ~G~Y~C~~~~~~ 113 (1011)
+|.|+|.+.|..
T Consensus 82 SG~Y~C~~rN~t 93 (104)
T cd05896 82 SGLYTCVLRNST 93 (104)
T ss_pred CeEEEEEECCCC
Confidence 999999999853
No 229
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.53 E-value=6.9e-07 Score=81.97 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=59.6
Q ss_pred cCCceeEEecCcEEEEEEEcCCC-------CeeEEeeCCeec-----CC-ccc-----CCCCcceEEeecCCCceeEEEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT-------GVLQWTKDDFAL-----GP-HRN-----LSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~-------~~v~W~k~~~~l-----~~-~~~-----~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
.|+.+.+.+|++|+|+|....+. ..+.|+|....- .. ... ....+|+.+..+...+.++|+|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 47789999999999999987432 368999875321 00 000 1122588887666778899999
Q ss_pred eecccCCCceEEEEEEeC
Q psy17146 95 YPVMLDDDARYQCQVSTG 112 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~ 112 (1011)
.+++.+|+|.|.|++...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998764
No 230
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.50 E-value=3.9e-07 Score=78.46 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=51.6
Q ss_pred eecCCCcEEEEEEccC----CCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 144 YTTEDREIELECISAN----GKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~----g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
.+.+|....|.|.-.. .++.++++||||+..+....+...... + ...|.|.++..+|+|.|+|+|.+..
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~-~------~~~L~I~~v~~~D~G~YtC~~~~~~ 78 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK-G------STYLHIIDVSLNDSGYYTCKLQFTH 78 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC-C------CCEEEEEEcChhhCEEEEEEEEEee
Confidence 3567889999996323 346789999999987654322111101 1 1369999999999999999999987
Q ss_pred CCc
Q psy17146 220 DRT 222 (1011)
Q Consensus 220 g~~ 222 (1011)
+..
T Consensus 79 ~g~ 81 (95)
T cd05897 79 EGK 81 (95)
T ss_pred CCE
Confidence 665
No 231
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.50 E-value=7.2e-07 Score=81.66 Aligned_cols=82 Identities=27% Similarity=0.339 Sum_probs=60.7
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC--CCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
+...|..+.+.+|++|+|+|.+... ...+.|+|....-. ........+|+.+..+...+.++|+|.+++.
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 4456788999999999999998763 45799998642110 0011122378888765556688999999999
Q ss_pred CCCceEEEEEEe
Q psy17146 100 DDDARYQCQVST 111 (1011)
Q Consensus 100 ~D~G~Y~C~~~~ 111 (1011)
+|+|.|.|.+..
T Consensus 82 ~Dsg~Y~C~~~~ 93 (116)
T cd07706 82 EDSAKYFCALST 93 (116)
T ss_pred HHCEEEEEEEEC
Confidence 999999999975
No 232
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.50 E-value=4e-07 Score=81.85 Aligned_cols=76 Identities=22% Similarity=0.373 Sum_probs=56.9
Q ss_pred eeEEecCcEEEEEEEcCC--CCeeEEeeCCeecCCc------c-----cCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 37 QTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALGPH------R-----NLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 37 ~~v~~G~~v~L~C~v~~~--~~~v~W~k~~~~l~~~------~-----~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
+++.+|++|+|.|.+... ...+.|+|....-... . .....+|+.+..+...+.++|+|.+++.+|+|
T Consensus 1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 367899999999999974 5589999865311000 0 11234688877665558899999999999999
Q ss_pred eEEEEEEeC
Q psy17146 104 RYQCQVSTG 112 (1011)
Q Consensus 104 ~Y~C~~~~~ 112 (1011)
.|.|.+.+.
T Consensus 81 ~Y~C~v~~~ 89 (105)
T cd00099 81 VYYCAVSLS 89 (105)
T ss_pred EEEEEEecC
Confidence 999999864
No 233
>PHA03271 envelope glycoprotein C; Provisional
Probab=98.47 E-value=0.00012 Score=76.99 Aligned_cols=231 Identities=16% Similarity=0.264 Sum_probs=139.3
Q ss_pred cceEEeecCCCceeEEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEE
Q psy17146 77 DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECI 156 (1011)
Q Consensus 77 ~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~ 156 (1011)
++|.+-.........|.|++|...|+|.|+-...+... ..+......+.+...|....+...+ +.+|+...-.|.
T Consensus 194 ~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N--~~i~e~~~~~~v~~RPPsVsV~a~P---VL~Ge~YkAtC~ 268 (490)
T PHA03271 194 NKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFN--RPLLDKHIYIRVCQRPASVDVLAPP---VLSGENYKASCI 268 (490)
T ss_pred ceeEEeeccccceeeEEEEEeecccceEEEEEecCCCC--CccccceEEEEEEecCCCccccCCc---cccCCCceEEEE
Confidence 56666666666677899999999999977666554322 2344555667776655544444443 357999999999
Q ss_pred ccCCCCC--cEEEEEeCCceeeeceeEEEee--ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc--eeEEEEEE
Q psy17146 157 SANGKPP--AEITWIDGTGTVMSNVRVTEEA--SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT--YKVARLKL 230 (1011)
Q Consensus 157 ~~~g~P~--~~i~W~k~~~~l~~~~~~~~~~--~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~--~~s~~v~v 230 (1011)
++.-+|+ ..++||+||..+.......... ....+.+...++|.+.+...+.--..+|.+.-..+.. ..++...-
T Consensus 269 vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP 348 (490)
T PHA03271 269 VRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIP 348 (490)
T ss_pred eeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCC
Confidence 8888885 4689999988775522211111 1223344555677776654455568999998654422 23444445
Q ss_pred EEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEE---EEE
Q psy17146 231 LVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCE---VQV 307 (1011)
Q Consensus 231 ~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~---~~~ 307 (1011)
.|..+|.+.+... .|. ..|.+.-.|....+.|+.++.+......+. .+ .| .|. ..+
T Consensus 349 ~VY~~P~ISv~Fe------dG~---AVCtA~CVP~gV~lrWlVgD~p~pn~t~d~--~i--------tG--vC~erPGlV 407 (490)
T PHA03271 349 TVYHHPRISLAFK------DGY---AICTIECVPSGITVRWLVHDEPQPNTTYDT--VV--------TG--LCRTIDRHR 407 (490)
T ss_pred ccccCCeEEEEEe------CCE---EEEeccccCCCcEEEEEecCCCCCCccccc--cc--------cc--ccCCCCCce
Confidence 5666776665543 333 346666666668999999887654321110 00 00 111 011
Q ss_pred EeeCCcccc-cCCcEEEEEEeecCCCc
Q psy17146 308 SVIGSNRLV-EGTDVRLYCKAEANPSH 333 (1011)
Q Consensus 308 ~~~~~~~v~-~g~~v~l~C~~~~~p~~ 333 (1011)
.+.....+. .++.+.-.|...|.|.+
T Consensus 408 NLrS~lPlSd~dgpveYTCrL~GYP~~ 434 (490)
T PHA03271 408 NLISRIPVQDNWQKTKYTCRLIGYPFD 434 (490)
T ss_pred eeeccCCchhcCCceeEEEEEeecCCC
Confidence 111112233 44778999999999864
No 234
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.47 E-value=9.2e-07 Score=75.20 Aligned_cols=78 Identities=24% Similarity=0.357 Sum_probs=52.5
Q ss_pred cEEEEEEEEe-cCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe--EEEE
Q psy17146 645 TARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD--SVEI 721 (1011)
Q Consensus 645 ~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~--~~~~ 721 (1011)
.++|.|.+.| .|.+ .|+|+++|+++.... .......+.......+.|.|.....+|.|.|+|.|.|..... .+++
T Consensus 1 ~~~L~C~v~g~~P~~-~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~ 78 (82)
T cd05759 1 PYNLTCRARGAKPAA-EIIWFRDGEVLDGAT-YSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSV 78 (82)
T ss_pred CEEEEEEEeCccCCC-EEEEEECCEEccCce-eeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEE
Confidence 3689999997 5878 999999999886321 111111111111234688898888888999999999988644 4455
Q ss_pred EEE
Q psy17146 722 MLK 724 (1011)
Q Consensus 722 ~l~ 724 (1011)
+|.
T Consensus 79 ~l~ 81 (82)
T cd05759 79 TLD 81 (82)
T ss_pred EEc
Confidence 443
No 235
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.46 E-value=1.1e-06 Score=78.05 Aligned_cols=83 Identities=22% Similarity=0.349 Sum_probs=54.9
Q ss_pred cCcEEEEEEEcCC----CCeeEEeeCCeecC--Cc---ccC------CCCcceEEeec-CCCceeEEEEeecccCCCceE
Q psy17146 42 GSRVTLPCRVIDK----TGVLQWTKDDFALG--PH---RNL------SGFDRYAMIGS-DEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 42 G~~v~L~C~v~~~----~~~v~W~k~~~~l~--~~---~~~------~~~~r~~i~~~-~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
|++|+|+|.+.+. ...+.|+|...... .. ... ...+|+.+..+ ...+.++|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 8999999999743 12689998762111 00 000 11247776543 245778999999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEE
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
+|.+.+.. ...+..+.|+|
T Consensus 81 ~C~v~~~~----~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDG----FYEEATVELKV 99 (100)
T ss_pred EEEEecCC----cEEEEEEEEEE
Confidence 99998743 23455566655
No 236
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.46 E-value=8.7e-07 Score=75.76 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=52.0
Q ss_pred CCcEEEEEEccCCC--CCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE
Q psy17146 148 DREIELECISANGK--PPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV 225 (1011)
Q Consensus 148 g~~v~L~C~~~~g~--P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s 225 (1011)
|+++.|.|. +.+. +...+.|.+.++......................++|.|.+++.+|+|.|+|.|.|..+....+
T Consensus 1 Ge~~~L~C~-~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCT-ARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEE-EEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence 788999999 4444 4568899987764422111000000001122345799999999999999999999988866444
Q ss_pred EEEE
Q psy17146 226 ARLK 229 (1011)
Q Consensus 226 ~~v~ 229 (1011)
..+.
T Consensus 80 t~~~ 83 (86)
T cd05862 80 TIVI 83 (86)
T ss_pred EEEE
Confidence 4443
No 237
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.45 E-value=7.3e-07 Score=81.52 Aligned_cols=96 Identities=26% Similarity=0.361 Sum_probs=68.6
Q ss_pred eeecCCceeEEecCcEEEEEEEc-C-CCCeeEEeeCCe-----ecC--------CcccCCCCcceEEeecCCCceeEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVI-D-KTGVLQWTKDDF-----ALG--------PHRNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~-~-~~~~v~W~k~~~-----~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
++..|..+.+.+|++|+|.|... . ....+.|++... .+. ........+|..+..+...+.++|+|
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i 83 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI 83 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence 44567889999999999999999 3 334899998543 111 01112223677777777778899999
Q ss_pred eecccCCCceEEEEEEeCCCCCcceeeeEEEEEE
Q psy17146 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
.+++.+|+|.|.|.+.... .......+.|+|
T Consensus 84 ~~l~~~DsG~Y~C~v~~~~---~~~~~~~~~L~V 114 (114)
T PF07686_consen 84 KNLQPSDSGTYFCQVSTSN---EQSFGNGTKLTV 114 (114)
T ss_dssp SSESGGGEEEEEEEEEESS---EEEEEEEEEEEE
T ss_pred CCCCcCcCEEEEEEEEECC---CCEECCcEEEEC
Confidence 9999999999999998752 233444555554
No 238
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.44 E-value=5.9e-07 Score=71.77 Aligned_cols=63 Identities=29% Similarity=0.525 Sum_probs=49.2
Q ss_pred CCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 147 EDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+|+.+.|.|. ..+.|.+.+.|++++..+.... +.......|.|.+++.+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~-~~~~~~~~v~W~~~~~~~~~~~----------~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCP-AEGDPVPNITWLKDGKPLPESN----------RLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEee-CccCCCCeEEEEECCEECCCCC----------EEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 5889999999 6788999999999877664111 1112235899999999999999999998754
No 239
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.44 E-value=6e-07 Score=72.20 Aligned_cols=62 Identities=27% Similarity=0.415 Sum_probs=42.6
Q ss_pred cCcEEEEEEE-c-CCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEE
Q psy17146 42 GSRVTLPCRV-I-DKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQV 109 (1011)
Q Consensus 42 G~~v~L~C~v-~-~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 109 (1011)
|++|+|.|.+ . .+...+.|+|++..+.... ..............|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGS------TTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEE------EEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcc------eeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 8999999999 3 3566999999986543211 11111111111113999999999999999986
No 240
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.44 E-value=0.00013 Score=77.38 Aligned_cols=175 Identities=20% Similarity=0.309 Sum_probs=116.4
Q ss_pred EEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC--cEEEE
Q psy17146 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP--AEITW 168 (1011)
Q Consensus 91 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W 168 (1011)
.|.|+.++...+|.|+=+..+.+. ....+..++++.+.+|. ..+...+ +.+|+...-.|.+..-+|. ..++|
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~--~~~~~~~VtV~~yr~Ps-vsv~~~P---vL~Ge~Y~AtC~va~YYPp~Sv~lrW 256 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADR--PHRYGTWTRVRMFRRPS-LSIRPHA---VLEGEPFGATCVAANYYPGDRAAFRW 256 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCC--ceeeeeEEEEEEecCCc-ccccCCc---cccCCCceEEEEeeeecCCCceEEEE
Confidence 499999999999999999877553 23456667788787765 2232222 4579999999998888885 46899
Q ss_pred EeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCc-CCcEEEEEEEeCCCCc---eeEEEEEEEEEeCCceEEEecC
Q psy17146 169 IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEH-HNTTFTCQAQNTADRT---YKVARLKLLVKYAPKVQVSVIG 244 (1011)
Q Consensus 169 ~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~-d~G~Y~C~a~n~~g~~---~~s~~v~v~v~~~P~~~~~~~~ 244 (1011)
|+|+..+..-...........+.+...++|++.....+ .--..+|.+.-..+.. ..++...-.|...|.+.+....
T Consensus 257 f~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~F~d 336 (466)
T PHA03270 257 FEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEMEFGG 336 (466)
T ss_pred EeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEEEeC
Confidence 99999885422211112222333556678877664332 3347999998544433 2344455567777777665542
Q ss_pred cceeecCceEEEEEEcccCCCccEEEEEeCCcccCC
Q psy17146 245 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA 280 (1011)
Q Consensus 245 ~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~ 280 (1011)
| ...|++.-.|....+.|+.++.+...
T Consensus 337 ------G---~AVCtA~CVPegV~l~W~V~D~~~pa 363 (466)
T PHA03270 337 ------D---EAVCTAACVPEGVTLAWLLGADPAPA 363 (466)
T ss_pred ------C---EEEEeccccCCCCEEEEEecCCCCCC
Confidence 3 23577776666789999998876644
No 241
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.44 E-value=9.8e-07 Score=75.95 Aligned_cols=80 Identities=16% Similarity=0.286 Sum_probs=58.6
Q ss_pred eeeecCCcEEEEEEEE------e----cCCCCeEEEEECCeEecccCC-----CCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 638 QFGIPGDTARVECSAF------S----IPPPEKVTWSYRGEEIGVGSS-----DDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~~------g----~p~p~~v~W~~~g~~l~~~~~-----~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
..+.+|+.+.|.|... + ......+.|+|++..+..... .|+... ...|.|.++..+|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~--------~~~Lwf~Pa~~eD 81 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE--------EDSIWFRPAELQD 81 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe--------CCEEEEEeCChhh
Confidence 4578999999999861 1 112237999999866554221 133322 3689999999999
Q ss_pred CEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 703 FGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+|.|+|++.|.-.-...++.|+|
T Consensus 82 SG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 82 SGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred CeEEEEEECCCCcceEEEEEEEC
Confidence 99999999999887777777764
No 242
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.43 E-value=3.9e-05 Score=81.21 Aligned_cols=81 Identities=21% Similarity=0.306 Sum_probs=62.3
Q ss_pred CCcEEEEeeccCCCeEEEEEEEEcCC-cceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCC--eeEEeeC
Q psy17146 436 SPNLTLLMTSDDLAGRYYCKASVMGF-PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE--KVTWSYR 512 (1011)
Q Consensus 436 ~~~L~I~~v~~~d~G~Y~C~a~n~~~-~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~ 512 (1011)
...|.|..++...+|.|+-...+... ......++|....+|. .......+.+|+...-.|.+...-++. .++|++|
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Ps-vsv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPS-LSIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFEG 259 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCc-ccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 44699999999999999999887433 3344556776666666 444556677999999999999884444 8999999
Q ss_pred CeEee
Q psy17146 513 GEEIG 517 (1011)
Q Consensus 513 ~~~i~ 517 (1011)
+.++.
T Consensus 260 g~~V~ 264 (466)
T PHA03270 260 GDEVF 264 (466)
T ss_pred Ccccc
Confidence 99874
No 243
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.43 E-value=8.7e-07 Score=79.70 Aligned_cols=86 Identities=27% Similarity=0.334 Sum_probs=57.7
Q ss_pred ecCcEEEEEEEcCCC-----------CeeEEeeCC--eecC------Cc--ccCCCCcceEEeec-CCCceeEEEEeecc
Q psy17146 41 VGSRVTLPCRVIDKT-----------GVLQWTKDD--FALG------PH--RNLSGFDRYAMIGS-DEEGDYSLEIYPVM 98 (1011)
Q Consensus 41 ~G~~v~L~C~v~~~~-----------~~v~W~k~~--~~l~------~~--~~~~~~~r~~i~~~-~~~~~~~L~I~~v~ 98 (1011)
.|++|+|+|.+.... ..+.|+|.. .... .. ..-...+|+.+..+ ...+.++|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 389999999997532 479999963 1111 00 00112257777543 34577899999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEc
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLV 130 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~ 130 (1011)
.+|+|.|.|.+.... ......+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~----~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGI----EDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCC----CcceEEEEEEEEE
Confidence 999999999998753 2345556676653
No 244
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.42 E-value=1.7e-06 Score=76.11 Aligned_cols=83 Identities=28% Similarity=0.332 Sum_probs=56.0
Q ss_pred cCcEEEEEEEcCCCC--eeEEeeCCee----cC-----Ccc--cCCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 42 GSRVTLPCRVIDKTG--VLQWTKDDFA----LG-----PHR--NLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 42 G~~v~L~C~v~~~~~--~v~W~k~~~~----l~-----~~~--~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
|++|+|+|....... .+.|+|.... +. ... .-...+|..+. ....+.++|+|.+++.+|+|.|.|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceeeeEEEEEE
Confidence 899999999876433 7999986421 10 000 01112455554 3345678999999999999999999
Q ss_pred EEeCCCCCcceeeeEEEEEE
Q psy17146 109 VSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 109 ~~~~~~~~~~~~s~~~~l~V 128 (1011)
+..... +..+..+.|+|
T Consensus 80 ~~~~p~---g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPD---GSKSGTMCLTV 96 (97)
T ss_pred EEeCCC---CCeeeEEEEEE
Confidence 976543 33566777776
No 245
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.42 E-value=2.3e-06 Score=72.43 Aligned_cols=70 Identities=27% Similarity=0.529 Sum_probs=54.9
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+.|.|.+.+++|.++++|+|++.++.... ......++..+...+.|.+.....++.+.|+|+|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK--LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce--eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 68999988889999999999998875433 22233344577777889998888888999999999987654
No 246
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.41 E-value=8.1e-07 Score=71.46 Aligned_cols=64 Identities=19% Similarity=0.437 Sum_probs=47.8
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEE
Q psy17146 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQA 215 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a 215 (1011)
|+.++|.|.+..+.+...+.|+|++..+............... ...|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSS----TSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEE----EEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeeccccee----eeEEEEccCCHHHCEEEEEEC
Confidence 7899999995367788899999998877665444322222211 125999999999999999986
No 247
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.40 E-value=9.6e-05 Score=79.23 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=62.5
Q ss_pred CcEEEEeeccCCCeEEEEEEEEc--CCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCC--CeeEEeeC
Q psy17146 437 PNLTLLMTSDDLAGRYYCKASVM--GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPP--EKVTWSYR 512 (1011)
Q Consensus 437 ~~L~I~~v~~~d~G~Y~C~a~n~--~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~ 512 (1011)
-.|.|.+++..++|.|+-...+. +.......++|..-.+| ........+.+|+...-.|.+...-++ ..++|+.|
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~P-sVsV~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n 367 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRP-NITVIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSN 367 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCC-CccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 45999999999999999887652 23345567777777777 444455667899999999999988444 48999999
Q ss_pred CeEeec
Q psy17146 513 GEEIGV 518 (1011)
Q Consensus 513 ~~~i~~ 518 (1011)
+.++..
T Consensus 368 g~~V~~ 373 (566)
T PHA03269 368 FGNIGK 373 (566)
T ss_pred CcccCc
Confidence 988753
No 248
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.40 E-value=4e-06 Score=72.33 Aligned_cols=73 Identities=8% Similarity=0.107 Sum_probs=56.5
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEec------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEE
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 709 (1011)
.+..+.+|++++|+|.+.+.... .+.|++-+..+. ...+.||.+... .+...+|+|.+++.+|+|.|.|.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~-~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~---~~~~~tL~I~~vq~~D~G~Y~Cq 80 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDS-VIQLLNPNRQTIYFRDVRPLKDSRFQLVNF---SSNELRVSLSNVSLSDEGRYFCQ 80 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCcc-EEEEEecCCcEEEecCccccCCcCEEEEeC---CCCEEEEEECcCCcccCEEEEEE
Confidence 45678999999999999988766 788987664432 124567776642 24466899999999999999999
Q ss_pred EEc
Q psy17146 710 VSN 712 (1011)
Q Consensus 710 a~N 712 (1011)
+..
T Consensus 81 v~t 83 (95)
T cd05881 81 LYT 83 (95)
T ss_pred EEc
Confidence 975
No 249
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.40 E-value=1.2e-06 Score=72.46 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=48.5
Q ss_pred EEEEEEEE-ecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 646 ARVECSAF-SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 646 v~L~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
++|+|... |.|++ +|+||+||++|..... .. .+.......++|.|.-...+|.+.|+|+|.|.++..
T Consensus 2 ~~L~C~s~~skP~a-~i~W~k~~~~l~~~~~---~~-~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAA-TLRWYRDRKELKGVIS---QQ-ENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCC-eEEEEECCEECCCCcc---cc-cCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 68999886 55777 9999999999964211 00 100001135689999999999999999999999854
No 250
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.39 E-value=1.4e-06 Score=75.58 Aligned_cols=74 Identities=15% Similarity=0.275 Sum_probs=56.5
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+|.|...+...+..|++|+|.|... .+.. .+.|+|+|....... .. ..+..+.|.|.+++.+|+|.|+|
T Consensus 2 kP~L~a~p~~vV~~G~~VtL~C~~~-~~~~-~f~l~k~g~~~~~~~------~~---~~~~~~~f~i~~v~~~~~G~Y~C 70 (91)
T cd05751 2 KPSLWAEPSSVVPLGKPVTLRCQGP-YGAV-EYRLYREGSTFAVKK------PP---EPQNKAKFFIPSMKREHAGRYRC 70 (91)
T ss_pred CCEEEecCCCccCCCCcEEEEEecC-CCCC-EEEEEECCCCccccc------cC---CCceeEEEEccCCChhHCEEEEE
Confidence 4666666667789999999999875 4555 899999998644210 00 13345789999999999999999
Q ss_pred EEEcC
Q psy17146 709 SVSNP 713 (1011)
Q Consensus 709 ~a~N~ 713 (1011)
.+.|.
T Consensus 71 ~~~~~ 75 (91)
T cd05751 71 YYRSG 75 (91)
T ss_pred EEECC
Confidence 99987
No 251
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.39 E-value=3.4e-06 Score=71.37 Aligned_cols=79 Identities=20% Similarity=0.387 Sum_probs=59.1
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc-eeEEEEE
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT-YKVARLK 229 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~-~~s~~v~ 229 (1011)
+.|.|.+.+++|.+.|+|+|++..+..... ......++..+...+.|.|.....+|...|+|+|.+..... ..+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~~ 80 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQR 80 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCCCCceeEEE
Confidence 689999888899999999999988765432 22333344577777899998888899999999999987654 3344433
Q ss_pred E
Q psy17146 230 L 230 (1011)
Q Consensus 230 v 230 (1011)
|
T Consensus 81 ~ 81 (83)
T cd07705 81 I 81 (83)
T ss_pred e
Confidence 3
No 252
>smart00409 IG Immunoglobulin.
Probab=98.37 E-value=3.5e-06 Score=72.07 Aligned_cols=74 Identities=30% Similarity=0.543 Sum_probs=57.9
Q ss_pred ceEEEcCCCcEEEEEEEecCCCCeEEEEec-CC------ceeecC---CCcEEEeecCCCCCEEEEEEEEecCCCceeeE
Q psy17146 552 YSVQVDRGAGVNLLCDVDGNPAPEITWIHE-DS------DKVVGN---SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 621 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~-~~------~~~~~~---~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 621 (1011)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +. ...... ...|.|.++..+|+|.|+|.+.+ ..+.....
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~-~~~~~~~~ 80 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN-SSGSASST 80 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc-CCCeEEEE
Confidence 456788999999999999998899999998 32 222222 26899999999999999999997 45555555
Q ss_pred EEEEE
Q psy17146 622 ATVYL 626 (1011)
Q Consensus 622 ~~l~V 626 (1011)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00409 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 76665
No 253
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.37 E-value=3.5e-06 Score=72.07 Aligned_cols=74 Identities=30% Similarity=0.543 Sum_probs=57.9
Q ss_pred ceEEEcCCCcEEEEEEEecCCCCeEEEEec-CC------ceeecC---CCcEEEeecCCCCCEEEEEEEEecCCCceeeE
Q psy17146 552 YSVQVDRGAGVNLLCDVDGNPAPEITWIHE-DS------DKVVGN---SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 621 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~-~~------~~~~~~---~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 621 (1011)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +. ...... ...|.|.++..+|+|.|+|.+.+ ..+.....
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~-~~~~~~~~ 80 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN-SSGSASST 80 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc-CCCeEEEE
Confidence 456788999999999999998899999998 32 222222 26899999999999999999997 45555555
Q ss_pred EEEEE
Q psy17146 622 ATVYL 626 (1011)
Q Consensus 622 ~~l~V 626 (1011)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00410 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 76665
No 254
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.37 E-value=1.5e-06 Score=77.72 Aligned_cols=85 Identities=25% Similarity=0.366 Sum_probs=56.1
Q ss_pred ecCcEEEEEEEcCC-------------CCeeEEeeCCee----cCCc--c----cCCCCcceEEeec-CCCceeEEEEee
Q psy17146 41 VGSRVTLPCRVIDK-------------TGVLQWTKDDFA----LGPH--R----NLSGFDRYAMIGS-DEEGDYSLEIYP 96 (1011)
Q Consensus 41 ~G~~v~L~C~v~~~-------------~~~v~W~k~~~~----l~~~--~----~~~~~~r~~i~~~-~~~~~~~L~I~~ 96 (1011)
.|++|+|+|.+... ...+.|+|.... +... . .-...+|+++... ...+.++|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 49999999999853 248999986321 1000 0 0011248887652 245778999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
++.+|+|.|+|.+.++... .+..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~----~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIED----NYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCC----ceeEEEEEEE
Confidence 9999999999999875321 3444555554
No 255
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.37 E-value=1.8e-06 Score=77.63 Aligned_cols=85 Identities=33% Similarity=0.449 Sum_probs=56.1
Q ss_pred ecCcEEEEEEEcCC-------CCeeEEeeCC---e-e--cC--Ccc----cCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 41 VGSRVTLPCRVIDK-------TGVLQWTKDD---F-A--LG--PHR----NLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 41 ~G~~v~L~C~v~~~-------~~~v~W~k~~---~-~--l~--~~~----~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
.|++|+|+|.+... ...+.|+|.. . . +. ... ......|+.+. ....+.++|+|.+++.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence 48999999998763 3489999973 1 1 10 000 01111344332 234578899999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEEc
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVLV 130 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~ 130 (1011)
+|.|.|.+.+.. ...+..+.|.|..
T Consensus 80 ~G~Y~C~v~~~~----~~~~~~v~L~V~~ 104 (106)
T cd05714 80 SGRYRCEVIDGI----EDEQDTVELEVRG 104 (106)
T ss_pred CEEEEEEEEcCC----CceEEEEEEEEEE
Confidence 999999998753 2346667777753
No 256
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.36 E-value=1.2e-06 Score=78.66 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=57.9
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC--CCeeEEeeCCeecC------Ccc--cCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALG------PHR--NLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~~~l~------~~~--~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
+...|..+.+.+|++|+|.|.+... ...+.|+|....-. ... .....+|+.... ....+.|+|.+++.
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~ 80 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG--SGTDFTLTISRVEP 80 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec--cCCEEEEEECCCCh
Confidence 5567888999999999999999764 46799998642110 000 111124666533 34678999999999
Q ss_pred CCCceEEEEEEeC
Q psy17146 100 DDDARYQCQVSTG 112 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~ 112 (1011)
+|+|.|.|.+.+.
T Consensus 81 ~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 81 EDAAVYYCQQYGT 93 (106)
T ss_pred HHCEEEEEEEeCC
Confidence 9999999998653
No 257
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.35 E-value=1.9e-06 Score=77.45 Aligned_cols=84 Identities=31% Similarity=0.383 Sum_probs=56.4
Q ss_pred ecCcEEEEEEEcCC-------CCeeEEeeCCee-------c-CCcc---c-CCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 41 VGSRVTLPCRVIDK-------TGVLQWTKDDFA-------L-GPHR---N-LSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 41 ~G~~v~L~C~v~~~-------~~~v~W~k~~~~-------l-~~~~---~-~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
.|++|+|+|.+... ...+.|+|.... + .... . -...+|+.+... ..+.++|+|.+++.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA-HDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC-CCCcEEEEEccCChHH
Confidence 48999999998753 236999997521 0 0000 0 112357777543 3567899999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
+|.|+|.+.++. ......+.|.|.
T Consensus 80 sG~Y~C~v~~~~----~~~~~~~~l~v~ 103 (106)
T cd05877 80 YGRYRCEVIDGL----EDESVVVALRLR 103 (106)
T ss_pred CEEEEEEEEecc----cceEEEEEEEEE
Confidence 999999998753 234555666664
No 258
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.35 E-value=3.2e-06 Score=74.81 Aligned_cols=82 Identities=27% Similarity=0.316 Sum_probs=53.9
Q ss_pred CcEEEEEEEcCCC----CeeEEeeCCee----c--C-C--cc--cCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 43 SRVTLPCRVIDKT----GVLQWTKDDFA----L--G-P--HR--NLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 43 ~~v~L~C~v~~~~----~~v~W~k~~~~----l--~-~--~~--~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
++|+|+|.+.... ..|.|+|.... + . . .. .-....|..+..+.. +.++|+|.+++.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSL-EDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCC-CceEEEEccCCcccCEEEEE
Confidence 5899999998743 27999997642 0 0 0 00 011135666554332 67899999999999999999
Q ss_pred EEEeCCCCCcceeeeEEEEEE
Q psy17146 108 QVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 108 ~~~~~~~~~~~~~s~~~~l~V 128 (1011)
.+..... +.....+.|+|
T Consensus 80 ~v~~~~~---g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQ---GNRQKVTTLTV 97 (98)
T ss_pred EEEeCCC---CcEEEEEEEEe
Confidence 9875332 33555566665
No 259
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.35 E-value=3.5e-06 Score=75.70 Aligned_cols=82 Identities=18% Similarity=0.430 Sum_probs=58.9
Q ss_pred cCCcEEEEEEEEecC-----CCCeEEEEECCe------E-e-cc--------cCCCCeEEecCCcCccceeEEEEcCCCC
Q psy17146 642 PGDTARVECSAFSIP-----PPEKVTWSYRGE------E-I-GV--------GSSDDYSVLEDPLKEGIKSTLIIRESRH 700 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p-----~p~~v~W~~~g~------~-l-~~--------~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 700 (1011)
.|++|+|.|.+...| ....|.|+|... . + .. ....|+.+... .....+|.|.+++.
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~sL~I~~v~~ 77 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA---HDLDASLVITDLRL 77 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC---CCCcEEEEEccCCh
Confidence 489999999988764 223799999531 1 1 10 01233333211 22357899999999
Q ss_pred CCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 701 DHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 701 ~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|+|.|.|.+.|..|..+..+.|.|.
T Consensus 78 ~DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 78 EDYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred HHCEEEEEEEEecccceEEEEEEEEE
Confidence 99999999999999999999999885
No 260
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.34 E-value=4e-06 Score=73.25 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=56.5
Q ss_pred CcEEEEEEEcCCCC-----eeEEeeCCe----ec--CC-----cccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 43 SRVTLPCRVIDKTG-----VLQWTKDDF----AL--GP-----HRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 43 ~~v~L~C~v~~~~~-----~v~W~k~~~----~l--~~-----~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
.+|+|+|.+....+ .|.|.+... .+ .. ...-...+|..+.. ...++.+|+|.+++.+|+|.|+
T Consensus 1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~-~~~~daSi~i~nl~~~D~G~Y~ 79 (99)
T cd05886 1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKN-PSFEDGTISLSRLELEDEGVYI 79 (99)
T ss_pred CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcC-CCCCcceEEEcCCccccCEEEE
Confidence 36899999985322 699998531 11 00 00112337888773 3457789999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEE
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
|.+.+...+ ..+..+.|+|+
T Consensus 80 C~v~t~P~g---~~~~~~~L~V~ 99 (99)
T cd05886 80 CEFATFPTG---NRESQLNLTVY 99 (99)
T ss_pred EEEEeCCCC---CeEEEEEEEEC
Confidence 999985433 35667777773
No 261
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.34 E-value=1.7e-06 Score=79.32 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=58.4
Q ss_pred ecCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCeecCC--------ccc-----CCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALGP--------HRN-----LSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~~l~~--------~~~-----~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
..|..+.+.+|++|+|.|.+.+ +...+.|+|....-.. ... -....|+.+..+.....++|+|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 4577889999999999999976 3558999996421110 000 01235777765544468899999
Q ss_pred ecccCCCceEEEEEEe
Q psy17146 96 PVMLDDDARYQCQVST 111 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~ 111 (1011)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999864
No 262
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.34 E-value=1.5e-06 Score=76.93 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=57.3
Q ss_pred eeEEecCcEEEEEEEcC--CCCeeEEeeCCeecC-------CcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 37 QTAVVGSRVTLPCRVID--KTGVLQWTKDDFALG-------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 37 ~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~-------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
+.+.+|++|+|+|.+.. ....+.|+|...... ........+|+.+..+...+.++|+|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 57899999999999876 455799998763211 011112246888776666788999999999999999999
Q ss_pred EEEeC
Q psy17146 108 QVSTG 112 (1011)
Q Consensus 108 ~~~~~ 112 (1011)
.+...
T Consensus 82 ~~~~~ 86 (98)
T cd05716 82 GVGDD 86 (98)
T ss_pred EcccC
Confidence 98764
No 263
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.34 E-value=3.5e-06 Score=75.71 Aligned_cols=84 Identities=18% Similarity=0.303 Sum_probs=58.7
Q ss_pred cCCcEEEEEEEEecC-----CCCeEEEEECC-----e-EecccCCCCeE--------EecCCcCccceeEEEEcCCCCCC
Q psy17146 642 PGDTARVECSAFSIP-----PPEKVTWSYRG-----E-EIGVGSSDDYS--------VLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p-----~p~~v~W~~~g-----~-~l~~~~~~~~~--------~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
.|++|+|.|.+...+ ....|.|+|.. . .+......... +... .......+|+|.+++.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence 489999999998764 23389999962 1 11111111111 1100 112356899999999999
Q ss_pred CEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 703 FGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|.|.|.+.|..+..+..++|.|.
T Consensus 80 ~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 80 SGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEE
Confidence 999999999998888999999885
No 264
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.32 E-value=8.9e-05 Score=79.49 Aligned_cols=187 Identities=20% Similarity=0.348 Sum_probs=121.3
Q ss_pred cceEEeecCCCceeEEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEE
Q psy17146 77 DRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECI 156 (1011)
Q Consensus 77 ~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~ 156 (1011)
++|.+-.....+...|+|++++..++|.|.=++.+...+ ....+..+.+.++.+|. ..+...+ +.+|+...-.|.
T Consensus 276 ~~yi~p~~a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~-t~~~~~~VtV~~yr~Ps-VsV~p~P---VL~Ge~YkAtC~ 350 (566)
T PHA03269 276 EKYIIPDRKTTSDFSLHILSLDASTEGTYIWRVIHTANK-NVINEHHITVMSYKRPN-ITVIGDP---VLLGNPYAAYCK 350 (566)
T ss_pred ceEEeccCCCCCccceEEeecccccCceEEEEEecCCCC-ceeeeeEEEEEEecCCC-ccccCCc---cccCCCceEEEE
Confidence 566665555666778999999999999999777654332 23445667777777763 2333222 457999999999
Q ss_pred ccCCCCC--cEEEEEeCCceeeecee-EEEeeecCCceEEEEEEEEEeeccCcC--CcEEEEEEEeCCCCce---eEEEE
Q psy17146 157 SANGKPP--AEITWIDGTGTVMSNVR-VTEEASVDGRRTTVKSTLVLTPKKEHH--NTTFTCQAQNTADRTY---KVARL 228 (1011)
Q Consensus 157 ~~~g~P~--~~i~W~k~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d--~G~Y~C~a~n~~g~~~---~s~~v 228 (1011)
+..-+|. ..++||+|++.+..... .......+| .+...++|.+......| --..+|.+.-..+... .++..
T Consensus 351 vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dG-lFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaa 429 (566)
T PHA03269 351 VNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADG-LFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAV 429 (566)
T ss_pred eeeecCCCceEEEEEeCCcccCccccccceeecCCC-ceEEEEEEeccCccccCCCCCCceEEEEEccCCchheeccccc
Confidence 8888885 46899999988875221 111223333 45666788874432222 4667999986544432 23455
Q ss_pred EEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCc-cEEEEEeCCccc
Q psy17146 229 KLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSH-MKYRWYINDQPV 278 (1011)
Q Consensus 229 ~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~-~~i~W~~~~~~l 278 (1011)
.-.|...|.+.+... .|. ..|.+.-.+.. +.+.|+.++.+.
T Consensus 430 tP~VY~~PtISm~Fe------dG~---AVCtA~CVP~~~V~l~WlVgD~p~ 471 (566)
T PHA03269 430 TPDVYPFPNVSIEII------DGH---IVCLAKCVPRGVVHFNWWINDIPI 471 (566)
T ss_pred CCccccCCeEEEEEe------CCE---EEEecccccCCCceEEEEecCCCC
Confidence 556777777766554 232 34666666543 699999988774
No 265
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.32 E-value=1.3e-06 Score=76.79 Aligned_cols=82 Identities=24% Similarity=0.390 Sum_probs=54.5
Q ss_pred EecCcEEEEEEEcC--CCCeeEEeeCCeecCCcccC-----------CCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 40 VVGSRVTLPCRVID--KTGVLQWTKDDFALGPHRNL-----------SGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 40 ~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~~~-----------~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
.+|++|+|+|.... ....+.|+|....+...... ...+|+.+ ..++++|+|.+++.+|+|.|+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~----~~~~~sL~I~~~~~~DsG~Y~ 77 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF----SQNDYSLQISNLKMEDAGSYR 77 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe----cCCceeEEECCCchHHCEEEE
Confidence 47999999999875 23379999875332211110 11135555 234679999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEE
Q psy17146 107 CQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
|.+.... + ........|.|
T Consensus 78 c~v~~~~-~--~~~~~~f~L~v 96 (97)
T cd05775 78 AEINTKN-G--VTITKEFTLHI 96 (97)
T ss_pred EEEEcCC-C--CeEEEEEEEEe
Confidence 9998754 2 22345566655
No 266
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.31 E-value=8.2e-06 Score=77.34 Aligned_cols=94 Identities=15% Similarity=0.238 Sum_probs=64.1
Q ss_pred CceeEEecCcEEEEEEEc-C-CCCeeEEeeCCeecCCccc----CCC--CcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 35 QDQTAVVGSRVTLPCRVI-D-KTGVLQWTKDDFALGPHRN----LSG--FDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~-~-~~~~v~W~k~~~~l~~~~~----~~~--~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
..++|.+|++|+|.|... + ....+.|+|....+..... +.+ .+|+.+.... ....+|+|.+|+.+|+|.|.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s-~~~StItIknVt~sDeGcY~ 101 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKS-FNESTILIKNVSLKDNGCYT 101 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccC-CCcceEEEEeCChhhCeEEE
Confidence 567899999999999986 3 3568999997543321111 111 1466643322 23468999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEEcC
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVLVP 131 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~~~ 131 (1011)
|...--..+ ...+..+.|+|...
T Consensus 102 C~F~tfp~G--~~~~gt~CLtVt~~ 124 (189)
T PHA02987 102 CIFNTLLSK--NNEKGVVCLNVTTD 124 (189)
T ss_pred EEEEecCCC--CCceeEEEEEEEch
Confidence 998754322 14677788888864
No 267
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.30 E-value=3.8e-06 Score=74.20 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=57.0
Q ss_pred CcEEEEEEEcCC----CCeeEEeeCCee-----cC---C--c-ccC-CCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 43 SRVTLPCRVIDK----TGVLQWTKDDFA-----LG---P--H-RNL-SGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 43 ~~v~L~C~v~~~----~~~v~W~k~~~~-----l~---~--~-~~~-~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
.+|+|+|..... ...+.|+|.... +. . . ... ...+|..+..+...+.++|+|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 368999999753 238999995422 10 0 0 111 122688887765667889999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEE
Q psy17146 107 CQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
|.+.+...+. .+..+.|+|
T Consensus 81 C~v~~~p~g~---~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGN---FEAELVLTV 99 (100)
T ss_pred EEEEeCCCCC---eeeEEEEEe
Confidence 9998744332 366677766
No 268
>PHA03376 BARF1; Provisional
Probab=98.30 E-value=1.4e-05 Score=74.95 Aligned_cols=80 Identities=19% Similarity=0.284 Sum_probs=55.4
Q ss_pred cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCC
Q psy17146 349 ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED 428 (1011)
Q Consensus 349 ~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~ 428 (1011)
..+-+|.|.++..+ |.|.|+|.++...........|.+..+-.+...........-+..++.|...|+|.|.+.|..+.
T Consensus 84 ~gnvsLvI~~l~lS-DdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 84 ANTFFLVVTAANIS-HDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred CCeEEEEEEeeeec-CCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheecccc
Confidence 46778999999998 99999999986554444444444444333333322222223567799999999999999999875
Q ss_pred C
Q psy17146 429 S 429 (1011)
Q Consensus 429 ~ 429 (1011)
.
T Consensus 163 ~ 163 (221)
T PHA03376 163 G 163 (221)
T ss_pred C
Confidence 3
No 269
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.29 E-value=9.7e-07 Score=73.60 Aligned_cols=75 Identities=27% Similarity=0.420 Sum_probs=50.1
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+|.|.......+..+..++|.|.+.+.+.+..++|+ +...... ..... .....+.|.|.++..+|.|.|+|
T Consensus 1 kP~I~~~~~~~~~~~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~-~~~~~-------~~~~~~~L~i~~v~~~~~g~y~C 71 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGSVTLTCSAEGGPPPPSISWY-DSNPSFN-SNSRG-------SSSSNSTLTISNVTRSDNGTYTC 71 (75)
T ss_dssp ESEEEEESTSEEETTEEEEEEEEESSEESSEEEEEE-TEEEEEE-EEEEE-------EEEEEEEEEESSCCGGGTEEEEE
T ss_pred CCEEEEcCCCcEeeceeEEEEEEEccccCCeEEEEE-ecCCcee-eeeee-------ccceeeEEEEccCCHHhCcEEEE
Confidence 466665444444444559999999999844499999 1111110 00000 12345899999999999999999
Q ss_pred EEEc
Q psy17146 709 SVSN 712 (1011)
Q Consensus 709 ~a~N 712 (1011)
+|+|
T Consensus 72 ~a~N 75 (75)
T PF13927_consen 72 IASN 75 (75)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9998
No 270
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.27 E-value=3.8e-06 Score=74.19 Aligned_cols=73 Identities=26% Similarity=0.353 Sum_probs=52.1
Q ss_pred eeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCCc--------ccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 37 QTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPH--------RNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 37 ~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
+.+.+|++|+|.|.+... ...+.|||....-... ......+|+....+ .+.++|+|.+++.+|+|.|
T Consensus 1 ~~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~--~~~~~L~I~~~~~~Dsg~Y 78 (98)
T cd04984 1 LSVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKS--GNTASLTISGAQTEDEADY 78 (98)
T ss_pred CccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEcc--CCEEEEEECCCChhhCEEE
Confidence 367899999999999764 4579999875421110 00111356666443 3678999999999999999
Q ss_pred EEEEEe
Q psy17146 106 QCQVST 111 (1011)
Q Consensus 106 ~C~~~~ 111 (1011)
.|.+.+
T Consensus 79 ~C~~~~ 84 (98)
T cd04984 79 YCQVWD 84 (98)
T ss_pred EEEEcc
Confidence 999875
No 271
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.27 E-value=2.8e-06 Score=74.15 Aligned_cols=67 Identities=21% Similarity=0.204 Sum_probs=48.1
Q ss_pred cCcEEEEEEEcCC-CCeeEEeeCCeecCCcc------------cCCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 42 GSRVTLPCRVIDK-TGVLQWTKDDFALGPHR------------NLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 42 G~~v~L~C~v~~~-~~~v~W~k~~~~l~~~~------------~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
|++|+|.|.+... ...+.|+|......... .-...+|+.+..+ ++|+|.+++.+|+|.|+|.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-----~sL~I~~l~~~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-----GSLLIQNLTKEDSGTYTLQ 75 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-----ceEEEccCCchhcEEEEEE
Confidence 8999999998863 34899999874432111 0112256665432 6899999999999999999
Q ss_pred EEeCC
Q psy17146 109 VSTGI 113 (1011)
Q Consensus 109 ~~~~~ 113 (1011)
+....
T Consensus 76 v~~~~ 80 (92)
T cd05741 76 IISTN 80 (92)
T ss_pred EEcCC
Confidence 98754
No 272
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.26 E-value=9.9e-07 Score=73.55 Aligned_cols=68 Identities=29% Similarity=0.575 Sum_probs=53.7
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCC-CCeEEEE------ecCCceeecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWI------HEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p-~p~v~W~------k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
+|.+...+.......+. ++|.|.+.+.+ .+.++|+ ...........+.|.|.++..+|.|.|+|.|+|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 46677777666666666 99999999998 8899999 222333445568899999999999999999987
No 273
>PHA03271 envelope glycoprotein C; Provisional
Probab=98.25 E-value=0.001 Score=70.19 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=58.9
Q ss_pred CCcEEEEeeccCCCeEEEEEEEEcCC-cceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCC--eeEEeeC
Q psy17146 436 SPNLTLLMTSDDLAGRYYCKASVMGF-PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPE--KVTWSYR 512 (1011)
Q Consensus 436 ~~~L~I~~v~~~d~G~Y~C~a~n~~~-~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~--~v~W~~~ 512 (1011)
.-.|.|+++...|+|.|+....+... .-....+.+.+...|.-.......+.+|+...-.|.+...-++. .++|+.|
T Consensus 206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPPVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 34589999999999977665554222 22334555666555555555666778999999999999884444 8999999
Q ss_pred CeEee
Q psy17146 513 GEEIG 517 (1011)
Q Consensus 513 ~~~i~ 517 (1011)
|.++.
T Consensus 286 G~~V~ 290 (490)
T PHA03271 286 GNIAT 290 (490)
T ss_pred Ccccc
Confidence 98774
No 274
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.25 E-value=1.3e-05 Score=72.34 Aligned_cols=88 Identities=22% Similarity=0.393 Sum_probs=58.4
Q ss_pred CCceeeecCCcEEEEEEEEecCC---CCeEEEEE---------------CCeEecc---cCCCCeEEecCCcCccceeEE
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPP---PEKVTWSY---------------RGEEIGV---GSSDDYSVLEDPLKEGIKSTL 693 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~---p~~v~W~~---------------~g~~l~~---~~~~~~~~~~~~~~~~~~~~L 693 (1011)
+....+..|+.++|.|.+..... ...|+|.+ +|+.... .-.+|..+..+. .....+|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~--~~~daSI 82 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP--SRKDGSI 82 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC--CcCeeEE
Confidence 44556889999999999976431 23899943 3333321 112344444332 2345799
Q ss_pred EEcCCCCCCCEEEEEEEEcCCCCe--EEEEEEE
Q psy17146 694 IIRESRHDHFGVYNCSVSNPYGSD--SVEIMLK 724 (1011)
Q Consensus 694 ~I~~~~~~d~G~Y~C~a~N~~G~~--~~~~~l~ 724 (1011)
.|.+++.+|.|.|+|.+.|.-+.. ...+.|.
T Consensus 83 ~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 83 VIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred EEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 999999999999999999988743 3444443
No 275
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.23 E-value=1.1e-05 Score=69.69 Aligned_cols=82 Identities=24% Similarity=0.219 Sum_probs=55.8
Q ss_pred CcEEEEEEEcCC--CCeeEEeeCCe----ecCCcc---c----CCCCcceEEeecCCCceeEEEEeecccCCCceEEEEE
Q psy17146 43 SRVTLPCRVIDK--TGVLQWTKDDF----ALGPHR---N----LSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQV 109 (1011)
Q Consensus 43 ~~v~L~C~v~~~--~~~v~W~k~~~----~l~~~~---~----~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 109 (1011)
++|+|+|..... ...|.|.|... .+.... . -...+|..+.. ...++.+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~-~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN-YSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC-CCCCccEEEEeCCCccccEEEEEEE
Confidence 479999999863 33899988532 111110 0 12235888763 3456789999999999999999999
Q ss_pred EeCCCCCcceeeeEEEEEE
Q psy17146 110 STGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 110 ~~~~~~~~~~~s~~~~l~V 128 (1011)
..... +..+..+.|+|
T Consensus 80 ~tfP~---G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPL---GNTQSSTTVTV 95 (96)
T ss_pred EeCCC---CCeeEEEEEEE
Confidence 87543 34566677766
No 276
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.22 E-value=6e-06 Score=73.58 Aligned_cols=85 Identities=25% Similarity=0.293 Sum_probs=58.2
Q ss_pred ecCcEEEEEEEcC-C-------CCeeEEeeCC-----eecC--Ccc------cCCCCcceEEeecC-CCceeEEEEeecc
Q psy17146 41 VGSRVTLPCRVID-K-------TGVLQWTKDD-----FALG--PHR------NLSGFDRYAMIGSD-EEGDYSLEIYPVM 98 (1011)
Q Consensus 41 ~G~~v~L~C~v~~-~-------~~~v~W~k~~-----~~l~--~~~------~~~~~~r~~i~~~~-~~~~~~L~I~~v~ 98 (1011)
.|++|+|+|.+.- + .+.+.|.|.. .... ... .-...+|.++..+. ..++.+|+|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 3889999999763 1 3589999862 1110 000 11223688887644 4578999999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
.+|+|.|+|.+..+. ...+..+.|.|.
T Consensus 81 ~~D~G~Y~C~v~~g~----~~~~~~v~L~V~ 107 (110)
T cd05902 81 YSDSGTYRCEVVLGI----NDEQDTVPLEVT 107 (110)
T ss_pred HHHCEEEEEEEEECC----cccEEEEEEEEE
Confidence 999999999998854 224556777765
No 277
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.22 E-value=1.1e-05 Score=72.33 Aligned_cols=83 Identities=20% Similarity=0.317 Sum_probs=58.3
Q ss_pred cCCcEEEEEEEEecC------------CCCeEEEEEC--Ce--E-ecc---------cCCCCeEEecCCcCccceeEEEE
Q psy17146 642 PGDTARVECSAFSIP------------PPEKVTWSYR--GE--E-IGV---------GSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p------------~p~~v~W~~~--g~--~-l~~---------~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
.|++|+|.|...... .+ .|.|+|. |+ . +.. .-.+|+.+..... .....+|+|
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~-~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~-~~~~asL~I 78 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSP-RIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPA-IPSDATLEI 78 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCC-EEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCC-CCCCcEEEE
Confidence 489999999997543 24 8999984 21 1 110 1112444432110 224689999
Q ss_pred cCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 696 RESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.+++.+|+|.|.|.+.+....++..+.|.|+
T Consensus 79 ~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 79 TELRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred eecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 9999999999999999888888999888875
No 278
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.22 E-value=5.8e-06 Score=71.99 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=52.2
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
|.+...| ...|.+|++|+|.|........+.|+|++........ . .. ......+.+.|.+++.+|+|.|+|
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~-~--~~-----~~~~~~a~f~I~~~~~~~~G~Y~C 72 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDIRFDRFILYKEGRSKPVLHL-Y--EK-----HHGGFQASFPLGPVTPAHAGTYRC 72 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCCCCCEEEEEECCCCCCceec-c--cc-----cCCeEEEEEEecCCCcccCEEEEE
Confidence 3444444 4578899999999988776668999999865321100 0 00 012234579999999999999999
Q ss_pred EEEe
Q psy17146 108 QVST 111 (1011)
Q Consensus 108 ~~~~ 111 (1011)
....
T Consensus 73 ~~~~ 76 (94)
T cd05711 73 YGSY 76 (94)
T ss_pred EEEC
Confidence 9753
No 279
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.21 E-value=6.8e-06 Score=72.64 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=54.4
Q ss_pred CCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc-------------------------eeecCCCcEEEeecCCCCCE
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD-------------------------KVVGNSPNLTLLMTSDDLAG 604 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~-------------------------~~~~~~~~L~I~~v~~~d~G 604 (1011)
.+.+..+.+|+++.|.|.........++|+|.... .....+++|.|.+++.+|+|
T Consensus 4 e~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G 83 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG 83 (105)
T ss_pred eccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence 44556688999999999765444449999996311 11233589999999999999
Q ss_pred EEEEEEEecCCCceeeEEEEE
Q psy17146 605 RYYCKASVMGFPEVGAEATVY 625 (1011)
Q Consensus 605 ~Y~C~a~n~~~~~~s~~~~l~ 625 (1011)
.|+|.+.+.........+.|.
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEEEEeCCccEEEEEEEEE
Confidence 999999984334444454444
No 280
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.20 E-value=4.1e-06 Score=75.23 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=53.0
Q ss_pred eeEEecCcEEEEEEEcC--CCCeeEEeeCCeecCCc-----------c-----cCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 37 QTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPH-----------R-----NLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 37 ~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~-----------~-----~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+.+.+|++|+|.|.+.. ....+.|||........ . .-...+|+.+........++|+|.+++
T Consensus 1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 36889999999999865 34479999875431000 0 000135676654445567899999999
Q ss_pred cCCCceEEEEEEe
Q psy17146 99 LDDDARYQCQVST 111 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~ 111 (1011)
.+|+|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999999864
No 281
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.18 E-value=1.1e-05 Score=67.84 Aligned_cols=74 Identities=24% Similarity=0.413 Sum_probs=58.5
Q ss_pred CceEecCCCcEEEEeecCCCCCCceEEEeCCCce-----eeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEE
Q psy17146 398 YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK-----VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 472 (1011)
Q Consensus 398 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~-----~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v 472 (1011)
....+.+|+++.|.|...+. .+.+.|++++..+ .......|.|..++.+|+|.|.|.+.-.|....-..+.+.|
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v 82 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNV 82 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEE
Confidence 45678999999999999865 6799999998754 23345568899999999999999998666555555555554
No 282
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.17 E-value=1.5e-05 Score=69.04 Aligned_cols=74 Identities=42% Similarity=0.661 Sum_probs=57.8
Q ss_pred CCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 147 EDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
+|+.+.|+|.+..++|++.|+|+.++..+.. .........+...+...++|.+.....++...++|.|.+....
T Consensus 13 ~~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 13 EGEEVTLTCSSSGGYPPPQITWYLDGGPVVA-SNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp STEEEEEEEEEEEEBS-EEEEEEETTCEECE-EEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred cceEEEEEEEeCCeECCeEEEEEECCCceee-eeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 3789999999899999999999999988822 2222334555667777789999888888899999999998654
No 283
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.16 E-value=1.8e-05 Score=66.80 Aligned_cols=71 Identities=20% Similarity=0.431 Sum_probs=55.4
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+.|.|.+.+++|.+.++|+|++..+...... ......+..+...+.|.+.....++...|+|+|.|.....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~-~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~ 72 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYL-KEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA 72 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceee-EeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence 6899998888999999999999987543322 2333344577778899998888889999999999876543
No 284
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.16 E-value=1.4e-05 Score=70.69 Aligned_cols=79 Identities=24% Similarity=0.303 Sum_probs=54.3
Q ss_pred CcEEEEEEEEecC--CCCeEEEEECCeE----ecc-----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 644 DTARVECSAFSIP--PPEKVTWSYRGEE----IGV-----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 644 ~~v~L~C~~~g~p--~p~~v~W~~~g~~----l~~-----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
++|+|.|.....+ ....|.|+|.... +.. ....+..+... .....+|+|.+++.+|+|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~sL~I~~v~~~D~G~Y 77 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNS---SLEDATISISNLRLEDEGNY 77 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCC---CCCceEEEEccCCcccCEEE
Confidence 5789999998765 3337999996431 100 00122222211 11357999999999999999
Q ss_pred EEEEEc-CCCCeEEEEEEEe
Q psy17146 707 NCSVSN-PYGSDSVEIMLKP 725 (1011)
Q Consensus 707 ~C~a~N-~~G~~~~~~~l~V 725 (1011)
.|.+.+ ..|...+.+.|.|
T Consensus 78 ~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 78 ICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEEEeCCCCcEEEEEEEEe
Confidence 999875 7789999998887
No 285
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.15 E-value=1.9e-05 Score=71.01 Aligned_cols=84 Identities=19% Similarity=0.310 Sum_probs=58.6
Q ss_pred cCCcEEEEEEEEecCC---------CCeEEEEEC--CeEecc------------cCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 642 PGDTARVECSAFSIPP---------PEKVTWSYR--GEEIGV------------GSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p~---------p~~v~W~~~--g~~l~~------------~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
.|++|+|.|.....+. ...|.|+|. ++.... .-.+|+.+..+. .....++|+|.++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~-~~~~~asL~I~~l 79 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYP-ENRGDASLEISRL 79 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCC-CCCCcEEEEECCC
Confidence 3899999999986542 247999985 222110 111233332211 1234578999999
Q ss_pred CCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 699 RHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+.+|+|.|.|.+....+..++.+.|.|.
T Consensus 80 ~~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 80 RSSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred ChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 9999999999999987888889988874
No 286
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.14 E-value=1.2e-05 Score=71.48 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=55.1
Q ss_pred CCcEEEEEEEEecC--CCCeEEEEECCe--Eecc---c----------CCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 643 GDTARVECSAFSIP--PPEKVTWSYRGE--EIGV---G----------SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 643 G~~v~L~C~~~g~p--~p~~v~W~~~g~--~l~~---~----------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
|++|+|.|...... ....+.|+|... .+.. + -..|+.+..+.. .....+|+|.+++.+|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~~~sL~I~~v~~~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAI-AEGSVALRIHNVRASDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccc-cCCcEEEEEEcCChhhCEE
Confidence 78899999986332 223688988541 1111 0 012333322111 1235789999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEe
Q psy17146 706 YNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V 725 (1011)
|+|.+.|..+..++.+.|.|
T Consensus 80 Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 80 YTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEecCCcEEEEEEEEEE
Confidence 99999999888888888876
No 287
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.14 E-value=1.9e-05 Score=70.35 Aligned_cols=84 Identities=26% Similarity=0.357 Sum_probs=56.2
Q ss_pred cCcEEEEEEEcC-C-----------CCeeEEeeCC-----ee-----cCCc------ccCCCCcceEEeecC-CCceeEE
Q psy17146 42 GSRVTLPCRVID-K-----------TGVLQWTKDD-----FA-----LGPH------RNLSGFDRYAMIGSD-EEGDYSL 92 (1011)
Q Consensus 42 G~~v~L~C~v~~-~-----------~~~v~W~k~~-----~~-----l~~~------~~~~~~~r~~i~~~~-~~~~~~L 92 (1011)
|++|+|+|.+.- + ...|.|++-. .. +... ..-...+|.++..+. ..++.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 789999999983 1 1279999751 11 1000 001223588876544 4578899
Q ss_pred EEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
+|.+++.+|+|.|+|++..+.. .....+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~----~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIE----DTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCc----ccEEEEEEEEE
Confidence 9999999999999999988642 23455666664
No 288
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.12 E-value=2.9e-05 Score=69.39 Aligned_cols=93 Identities=14% Similarity=0.271 Sum_probs=64.8
Q ss_pred EEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCc
Q psy17146 128 VLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEH 206 (1011)
Q Consensus 128 V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 206 (1011)
|.++|..+.+..+ ..+...|+.++|.|.+.+.+|. .+++|+||+..+..+.. ......++..+...+.|.+.....+
T Consensus 2 v~~~P~~p~i~~~-~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~~~d 79 (111)
T cd05772 2 VRAKPSVPVVSGP-SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLTEDD 79 (111)
T ss_pred cccCCCCcEeCCc-hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECcccc
Confidence 5677888877654 2344568889999998888895 79999999988754322 1122233346777788988875444
Q ss_pred CCcEEEEEEEeCCCCc
Q psy17146 207 HNTTFTCQAQNTADRT 222 (1011)
Q Consensus 207 d~G~Y~C~a~n~~g~~ 222 (1011)
+.-.|+|.+.+.....
T Consensus 80 ~~~~ytC~V~H~~l~~ 95 (111)
T cd05772 80 VHSQVTCEVQHRTLQA 95 (111)
T ss_pred ccCceEEEEEeCCCCC
Confidence 4456999999976544
No 289
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.11 E-value=9.4e-06 Score=71.33 Aligned_cols=75 Identities=23% Similarity=0.403 Sum_probs=52.2
Q ss_pred ecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCC-cCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 641 IPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDP-LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 641 ~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
..|+.++|.|.+.|. |..+.|+|++||..+..... ........ ......+.|.|......|.|.|+|.|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~-~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT-TTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee-ccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468899999999998 66558999999999864221 01111110 01113456777777777999999999998764
No 290
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.11 E-value=1.6e-05 Score=72.44 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=56.7
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCC----------cc---cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGP----------HR---NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~----------~~---~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
.|....+.+|++|+|.|..... ...+.|||....-.. .. .....+|+....+.....+.|+|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 5678899999999999998753 357999987532110 00 0111257777655545567899999
Q ss_pred cccCCCceEEEEEEe
Q psy17146 97 VMLDDDARYQCQVST 111 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~ 111 (1011)
++.+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999999864
No 291
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.10 E-value=1.4e-05 Score=72.36 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=54.4
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCe--Eec--------------ccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE--EIG--------------VGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~--~l~--------------~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
+....+.+|++++|.|.+.+ +.+ .+.|||... .+. .....++..... ......|.|.++
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~-~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L~I~~~ 79 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHD-NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP---SLTRSSLTIKSA 79 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCC-EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc---CCCccEEEECCC
Confidence 45667899999999999988 666 899999532 111 011234444332 224578999999
Q ss_pred CCCCCEEEEEEEEcCCC
Q psy17146 699 RHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~~G 715 (1011)
+.+|+|.|.|.+.+..|
T Consensus 80 ~~~Dsg~Y~Ca~~~~~~ 96 (110)
T cd05899 80 EPEDSAVYLCASSLGGG 96 (110)
T ss_pred ChhhCEEEEEEeeCCCC
Confidence 99999999999987644
No 292
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.09 E-value=1.4e-05 Score=72.23 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=57.0
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCe---E---ecc------cCCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE---E---IGV------GSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~---~---l~~------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
+....+.+|++|+|.|.+.+.+.. .+.|+|... + +.. ....++.+..+. ......|+|.+++.+|
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~~~~~D 81 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFY-YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDK--SRKSSSLHISAAQLSD 81 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCcc-EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcc--cCCEEEEEECCCCHHH
Confidence 446678999999999999987666 899998532 1 100 134556554321 2346899999999999
Q ss_pred CEEEEEEEEcCCC
Q psy17146 703 FGVYNCSVSNPYG 715 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G 715 (1011)
+|.|.|.+.+..+
T Consensus 82 sG~Y~C~~~~~~~ 94 (109)
T cd04983 82 SAVYFCALSESGG 94 (109)
T ss_pred CEEEEEEEecCCC
Confidence 9999999998654
No 293
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.09 E-value=1.2e-05 Score=70.17 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=52.2
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCCc------------------------eeecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDSD------------------------KVVGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~~------------------------~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
|++|+|.|.........+.|+|.... .....+++|+|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 78999999988777779999987522 112235899999999999999999999744
Q ss_pred CCceeeEEEEEE
Q psy17146 615 FPEVGAEATVYL 626 (1011)
Q Consensus 615 ~~~~s~~~~l~V 626 (1011)
.......+.|.|
T Consensus 81 ~~~~~~~~~l~v 92 (92)
T cd05741 81 GVTENAKFFLRV 92 (92)
T ss_pred CcEEEEEEEEEC
Confidence 455666666543
No 294
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.07 E-value=2.7e-05 Score=67.86 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=54.8
Q ss_pred CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 629 RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 629 ~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+|.|...+...+..|++|+|.|.... +.. .+.|+|+|...... ........+..+.+.|..++.+|+|.|+|
T Consensus 1 kP~l~a~p~~vV~~G~~VTL~C~~~~-~~~-~f~l~k~g~~~~~~------~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C 72 (94)
T cd05711 1 KPFLSAHPSPVVPSGENVTLQCHSDI-RFD-RFILYKEGRSKPVL------HLYEKHHGGFQASFPLGPVTPAHAGTYRC 72 (94)
T ss_pred CCEEEecCCCccCCCCeEEEEEecCC-CCC-EEEEEECCCCCCce------ecccccCCeEEEEEEecCCCcccCEEEEE
Confidence 46777777788999999999997654 334 79999998763310 00001113446799999999999999999
Q ss_pred EEE
Q psy17146 709 SVS 711 (1011)
Q Consensus 709 ~a~ 711 (1011)
...
T Consensus 73 ~~~ 75 (94)
T cd05711 73 YGS 75 (94)
T ss_pred EEE
Confidence 975
No 295
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.06 E-value=0.003 Score=68.15 Aligned_cols=171 Identities=21% Similarity=0.256 Sum_probs=107.9
Q ss_pred eeEEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC--cEE
Q psy17146 89 DYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP--AEI 166 (1011)
Q Consensus 89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~--~~i 166 (1011)
...|+|+.++..++|.|+=+..+.+. ....+..+.++.+.+|. ..+... .+.+|+...-.|.++.-+|. ..+
T Consensus 197 ~~~LtI~sltaaTeGvYtWr~~~~n~--t~~~~~~VtV~~yr~Ps-vsv~~~---PvL~Ge~y~A~C~aa~YYPp~Sv~~ 270 (486)
T PHA03273 197 KFPLTIKSVDWRTAGVYVWSLYAKNG--TLVNSTSVTVSTYNAPL-VDLSVH---PSLKGENYRAVCVVASYFPHSSVKL 270 (486)
T ss_pred ccceEEEecchhhceEEEEEEecCCC--ceeeeeEEEEEEecCCc-ccccCC---ccccCCCceEEEEeeeecCCCceEE
Confidence 36799999999999999977655432 23344556666676665 223222 24679999999998888885 468
Q ss_pred EEEeCCceeee-ce-eEEEeeecCCceEEEEEEEEEeec-cCcCCcEEEEEEEeCCCCce--e-EEEEEEEEEeCCceEE
Q psy17146 167 TWIDGTGTVMS-NV-RVTEEASVDGRRTTVKSTLVLTPK-KEHHNTTFTCQAQNTADRTY--K-VARLKLLVKYAPKVQV 240 (1011)
Q Consensus 167 ~W~k~~~~l~~-~~-~~~~~~~~~~~~~~~~~~L~I~~~-~~~d~G~Y~C~a~n~~g~~~--~-s~~v~v~v~~~P~~~~ 240 (1011)
+||+|+..+.. .. ........++ .+...++|.+... ..+.--..+|.+.-..+..+ + ++...-.|...|.+.+
T Consensus 271 rWf~dg~~V~~~~~~~~~~~~~~~g-l~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~ 349 (486)
T PHA03273 271 RWYKNAKEVDFTKYVTNASSVWVDG-LITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSV 349 (486)
T ss_pred EEEeCCeeccccccceeeEEEecCC-ceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEE
Confidence 99999998872 22 2222223333 4566678887764 33555689999986544431 1 3344556666777665
Q ss_pred EecCcceeecCceEEEEEEcccCCC-ccEEEEEeCC
Q psy17146 241 SVIGSNRLVEGTDVRLYCKAEANPS-HMKYRWYIND 275 (1011)
Q Consensus 241 ~~~~~~~v~~g~~v~L~C~~~~~~~-~~~i~W~~~~ 275 (1011)
.... |. ..|.+.-.|. .+.+.|+.++
T Consensus 350 ~F~~------G~---AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 350 TVED------GD---AVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred EEeC------CE---EEEecccccCCCeeEEEEccC
Confidence 5432 22 3465555544 4677777655
No 296
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.04 E-value=2.8e-05 Score=67.43 Aligned_cols=74 Identities=15% Similarity=0.306 Sum_probs=54.5
Q ss_pred eecCCCcEEEEEEccCCCCCcE--EEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 144 YTTEDREIELECISANGKPPAE--ITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~g~P~~~--i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
.+.+|+.++|+|.+.+++|.+. |+|||++.++...... ..........++|.+.....+|...|+|+|.+..+.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~----~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFG----DNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceec----cccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 3578999999999999999987 7999999888543211 111223445568888877777777999999987553
No 297
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.03 E-value=1.9e-05 Score=69.35 Aligned_cols=76 Identities=21% Similarity=0.389 Sum_probs=56.9
Q ss_pred cCCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 146 TEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
..|+.+.|.|.+.+.+|. +.++|++++..+................+...+.|.|.....+|.|.|+|+|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468899999995555574 7899999988886654422223334446667788999888888999999999997654
No 298
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.03 E-value=5e-05 Score=66.40 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=53.3
Q ss_pred cEEEEEEEEecCC---CCeEEEEECC--e--Eeccc-----------CCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 645 TARVECSAFSIPP---PEKVTWSYRG--E--EIGVG-----------SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 645 ~v~L~C~~~g~p~---p~~v~W~~~g--~--~l~~~-----------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.|+|.|.....++ ..+|+|.+.. . .+... -.+|...... ....++|.|.+++.+|+|.|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~---~~~daSi~i~nl~~~D~G~Y 78 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNP---SFEDGTISLSRLELEDEGVY 78 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCC---CCCcceEEEcCCccccCEEE
Confidence 5899999985332 1269998842 1 11110 1123333211 12357999999999999999
Q ss_pred EEEEEc-CCCCeEEEEEEEe
Q psy17146 707 NCSVSN-PYGSDSVEIMLKP 725 (1011)
Q Consensus 707 ~C~a~N-~~G~~~~~~~l~V 725 (1011)
+|.+.| ..|+.++.+.|+|
T Consensus 79 ~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 79 ICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEEEeCCCCCeEEEEEEEE
Confidence 999999 7899999999987
No 299
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.02 E-value=4.2e-05 Score=66.24 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=49.0
Q ss_pred CcEEEEEEEcCC--CCeeEEeeCCe----ecCCc-----ccC--CCCcceEEeecCCCceeEEEEeecccCCCceEEEEE
Q psy17146 43 SRVTLPCRVIDK--TGVLQWTKDDF----ALGPH-----RNL--SGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQV 109 (1011)
Q Consensus 43 ~~v~L~C~v~~~--~~~v~W~k~~~----~l~~~-----~~~--~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 109 (1011)
++++|.|..... ...+.|.|... .+... ..+ ...+|..+.... ..+.+|+|.||+.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~-~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST-REDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC-CCccEEEEcCCCcccCEEEEEEE
Confidence 579999999753 33789998642 11111 011 123688877543 36779999999999999999999
Q ss_pred EeCCC
Q psy17146 110 STGIL 114 (1011)
Q Consensus 110 ~~~~~ 114 (1011)
..-..
T Consensus 80 ~t~P~ 84 (96)
T cd05889 80 VTYPQ 84 (96)
T ss_pred EeCCC
Confidence 87543
No 300
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.01 E-value=5.1e-05 Score=67.05 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=52.9
Q ss_pred cEEEEEEEEecC--CCCeEEEEEC--C-e--Eec---cc--------CCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 645 TARVECSAFSIP--PPEKVTWSYR--G-E--EIG---VG--------SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 645 ~v~L~C~~~g~p--~p~~v~W~~~--g-~--~l~---~~--------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
+|+|.|.....+ ....|.|+|. + + .+. .. ..+|..+..+. ....++|+|.+++.+|+|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~--~~~~~sL~I~nv~~sD~GtY 79 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPN--PIADGALILRNAVQADEGKY 79 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCC--CCCceEEEEecCccccceEE
Confidence 689999987554 1227999983 2 1 111 00 01233332211 12357899999999999999
Q ss_pred EEEEEc-CCCCeEEEEEEEe
Q psy17146 707 NCSVSN-PYGSDSVEIMLKP 725 (1011)
Q Consensus 707 ~C~a~N-~~G~~~~~~~l~V 725 (1011)
.|.+.| ..|..++.+.|.|
T Consensus 80 ~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 80 KCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEEeCCCCCeeeEEEEEe
Confidence 999998 7788888888876
No 301
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.01 E-value=1.7e-05 Score=69.62 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=54.4
Q ss_pred ecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccCC----CCeEEecCCc-----CccceeEEEEcCCCCCCCEEEEEEE
Q psy17146 641 IPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGSS----DDYSVLEDPL-----KEGIKSTLIIRESRHDHFGVYNCSV 710 (1011)
Q Consensus 641 ~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~----~~~~~~~~~~-----~~~~~~~L~I~~~~~~d~G~Y~C~a 710 (1011)
..|++|+|.|.... .... .+.|+|....+..... .......... -.....+|+|.+++.+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~-~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIE-SITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCCcEEE-EEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence 46999999998754 3334 7999997543322111 0000100000 0123578999999999999999999
Q ss_pred EcCCCCe-EEEEEEEe
Q psy17146 711 SNPYGSD-SVEIMLKP 725 (1011)
Q Consensus 711 ~N~~G~~-~~~~~l~V 725 (1011)
.+..|.. ...+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9988754 66676665
No 302
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.00 E-value=3.5e-05 Score=67.76 Aligned_cols=80 Identities=20% Similarity=0.249 Sum_probs=54.7
Q ss_pred CCcEEEEEEEEecCCCCeEEEEECCe----Eec-c----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 643 GDTARVECSAFSIPPPEKVTWSYRGE----EIG-V----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p~~v~W~~~g~----~l~-~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
|++|+|.|..........|.|+|... .+. . .-.+++.+.. .....++|+|.+++.+|+|.|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~sL~I~nv~~~D~G~Y~ 77 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITS---LGLNSTSITIWNVTLEDEGCYK 77 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcC---CCCCccEEEEeCCceeeeEEEE
Confidence 78999999876554443699998532 111 0 0011222221 1234678999999999999999
Q ss_pred EEEE-cCCCCeEEEEEEEe
Q psy17146 708 CSVS-NPYGSDSVEIMLKP 725 (1011)
Q Consensus 708 C~a~-N~~G~~~~~~~l~V 725 (1011)
|.+. ...|..+..+.|+|
T Consensus 78 C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 78 CIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEEEeCCCCCeeeEEEEEE
Confidence 9976 67788888888876
No 303
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.98 E-value=3.2e-05 Score=70.24 Aligned_cols=92 Identities=20% Similarity=0.377 Sum_probs=53.2
Q ss_pred CCeeeecCCCcEEEEEEccCCCC---CcEEEEEeC---Cce---eee-ce-eE-EEeeecCCceE------EEEEEEEEe
Q psy17146 140 GDTLYTTEDREIELECISANGKP---PAEITWIDG---TGT---VMS-NV-RV-TEEASVDGRRT------TVKSTLVLT 201 (1011)
Q Consensus 140 ~~~~~v~eg~~v~L~C~~~~g~P---~~~i~W~k~---~~~---l~~-~~-~~-~~~~~~~~~~~------~~~~~L~I~ 201 (1011)
++.+++.+|+.++|.|......+ ...|.|++. +.. +.. .. .. .......+|.. ....+|+|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 45778899999999998432222 246999752 111 100 00 00 00001111211 123579999
Q ss_pred eccCcCCcEEEEEEEeCCCCceeEEEEEEE
Q psy17146 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLL 231 (1011)
Q Consensus 202 ~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~ 231 (1011)
+++.+|+|.|.|.+.|..+.......+.|.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred eCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 999999999999999876643223444443
No 304
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.98 E-value=6.8e-05 Score=71.24 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=61.8
Q ss_pred eeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee--ceeEEEeeecCCceEE-----EEEEEEEeeccCcCCcEEEEE
Q psy17146 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMS--NVRVTEEASVDGRRTT-----VKSTLVLTPKKEHHNTTFTCQ 214 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~--~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~d~G~Y~C~ 214 (1011)
.+++.+|+++.|.|....+...+.++|+|..+.+.. ...........+|... ..+.|.|.+++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 567889999999998434656778999997655443 1111111112223322 457899999999999999999
Q ss_pred EEeCCCCceeEEEEEEEEEeC
Q psy17146 215 AQNTADRTYKVARLKLLVKYA 235 (1011)
Q Consensus 215 a~n~~g~~~~s~~v~v~v~~~ 235 (1011)
..--......+..+-|.|...
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEecCCCCCceeEEEEEEEch
Confidence 875433323466667776543
No 305
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.96 E-value=6e-05 Score=65.21 Aligned_cols=79 Identities=14% Similarity=0.283 Sum_probs=55.7
Q ss_pred CcEEEEEEEEecCCCCeEEEEECC----eEecc-----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 644 DTARVECSAFSIPPPEKVTWSYRG----EEIGV-----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 644 ~~v~L~C~~~g~p~p~~v~W~~~g----~~l~~-----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
++|+|.|.....+...+|+|.|.. ..+.. .-.+|..+.. .....++|.|.+++.+|+|.|.|
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~---~~~~d~sl~i~nv~~~D~G~Y~C 77 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN---YSLLDATIMLENVGFSDIGVYIC 77 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC---CCCCccEEEEeCCCccccEEEEE
Confidence 468999998865554489998842 12211 1122333331 12346899999999999999999
Q ss_pred EE-EcCCCCeEEEEEEEe
Q psy17146 709 SV-SNPYGSDSVEIMLKP 725 (1011)
Q Consensus 709 ~a-~N~~G~~~~~~~l~V 725 (1011)
.+ ..+.|+.++++.|+|
T Consensus 78 ~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 78 KAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred EEEeCCCCCeeEEEEEEE
Confidence 96 568899999999987
No 306
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.94 E-value=4.9e-05 Score=69.43 Aligned_cols=92 Identities=17% Similarity=0.353 Sum_probs=54.1
Q ss_pred CCeeeecCCCcEEEEEEccCCCC---CcEEEEEeCCce------eee---ceeEE-EeeecCCceEE------EEEEEEE
Q psy17146 140 GDTLYTTEDREIELECISANGKP---PAEITWIDGTGT------VMS---NVRVT-EEASVDGRRTT------VKSTLVL 200 (1011)
Q Consensus 140 ~~~~~v~eg~~v~L~C~~~~g~P---~~~i~W~k~~~~------l~~---~~~~~-~~~~~~~~~~~------~~~~L~I 200 (1011)
++.+.+.+|+.++|.|......+ ...+.|++.... +.. +.... ......+|... ...+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 45677889999999997433222 256999864320 110 00000 00111122111 1367999
Q ss_pred eeccCcCCcEEEEEEEeCCCCceeEEEEEEE
Q psy17146 201 TPKKEHHNTTFTCQAQNTADRTYKVARLKLL 231 (1011)
Q Consensus 201 ~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~ 231 (1011)
.+++.+|+|.|.|.+.|..........+.|.
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 115 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR 115 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence 9999999999999999876654333445554
No 307
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.93 E-value=0.0001 Score=63.35 Aligned_cols=89 Identities=22% Similarity=0.371 Sum_probs=65.0
Q ss_pred ecCCeeeecCCCcEEE-EEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEE
Q psy17146 138 VQGDTLYTTEDREIEL-ECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQ 216 (1011)
Q Consensus 138 ~~~~~~~v~eg~~v~L-~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~ 216 (1011)
...+.+.+.+|+.+.+ .|.++.|+|+++|+|+.+..... ........++ .+...+.|.+...+.+|.-.++|++.
T Consensus 6 ~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~---~~~~~~~~ng-T~TV~S~~~l~p~r~d~G~~vtC~V~ 81 (97)
T cd07704 6 SPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS---ESHSQEHPNG-TTTVTSEYIWVPSRHANGHPLTCVVS 81 (97)
T ss_pred CCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc---ceeeecCCCC-CEEEEEEEEEEeCHHHCCcEEEEEEe
Confidence 4455777889999999 99999999999999998643321 1222233334 77778899999999999999999999
Q ss_pred eCCCCceeEEEEEE
Q psy17146 217 NTADRTYKVARLKL 230 (1011)
Q Consensus 217 n~~g~~~~s~~v~v 230 (1011)
+..-.........|
T Consensus 82 H~al~~~~~~~~~L 95 (97)
T cd07704 82 HPALQQDFRITHIL 95 (97)
T ss_pred CcccCCCceeeEEe
Confidence 98654433444443
No 308
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.91 E-value=4.3e-05 Score=68.56 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=52.1
Q ss_pred CCceeeecCCcEEEEEEEEecC-CCCeEEEEECC--e---Eecc-------cCCCCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIP-PPEKVTWSYRG--E---EIGV-------GSSDDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p-~p~~v~W~~~g--~---~l~~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
+....+.+|++|+|.|.+.+.. .. .+.|+|.. + .+.. ....++.... ......|+|.+++.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~-~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~~~~~ 81 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSN-YLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG----SGTDFTLTISRVEPE 81 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCC-cEEEEEECCCCCcEEEEECccccCCCCCCCEEEec----cCCEEEEEECCCChH
Confidence 4556789999999999998765 44 79999842 1 1111 1123444422 234568999999999
Q ss_pred CCEEEEEEEEcC
Q psy17146 702 HFGVYNCSVSNP 713 (1011)
Q Consensus 702 d~G~Y~C~a~N~ 713 (1011)
|+|.|.|.+.|.
T Consensus 82 Dsg~Y~Ca~~~~ 93 (106)
T cd04980 82 DAAVYYCQQYGT 93 (106)
T ss_pred HCEEEEEEEeCC
Confidence 999999999764
No 309
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.89 E-value=0.00014 Score=62.85 Aligned_cols=78 Identities=28% Similarity=0.474 Sum_probs=55.8
Q ss_pred CcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEE
Q psy17146 149 REIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228 (1011)
Q Consensus 149 ~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v 228 (1011)
..+.+.|.+..|+|.++|+|+++.... .........+ ..+...+.|.+.....+|+..|+|++.|..........+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~-gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGD-GTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCC-CCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 357899998999999999999973221 1122222233 356677899999988999999999999987655444444
Q ss_pred EE
Q psy17146 229 KL 230 (1011)
Q Consensus 229 ~v 230 (1011)
.|
T Consensus 92 ~l 93 (95)
T cd07703 92 TL 93 (95)
T ss_pred EE
Confidence 44
No 310
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.88 E-value=0.00011 Score=63.58 Aligned_cols=80 Identities=26% Similarity=0.418 Sum_probs=56.8
Q ss_pred CCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 148 DREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
.....+.|.+.+|+|.++|+|+++... ..... ........+...+.|.+.....+|+..|+|++.|..........
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~---~~~~~-~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~ 90 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGG---EAETQ-SKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFS 90 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCC---cceeE-eecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence 345789999889999999999997211 11121 12222335677789999998999999999999998765545555
Q ss_pred EEEE
Q psy17146 228 LKLL 231 (1011)
Q Consensus 228 v~v~ 231 (1011)
+.|.
T Consensus 91 ~~L~ 94 (95)
T cd05719 91 VTLN 94 (95)
T ss_pred EEee
Confidence 5543
No 311
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.88 E-value=0.00011 Score=65.57 Aligned_cols=83 Identities=14% Similarity=0.240 Sum_probs=57.0
Q ss_pred CCcEEEEEEEEecCC------CCeEEEEEC-----CeEe--c----------ccCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 643 GDTARVECSAFSIPP------PEKVTWSYR-----GEEI--G----------VGSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~------p~~v~W~~~-----g~~l--~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
|+.|+|.|.+.-.|. +..|.|+|. ...+ . ..-.+|..+..+.. .....+|.|.+++
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~-~~~~asL~i~nv~ 80 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPK-NRYNASLVLSRLR 80 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCC-CCceEEEEECCCC
Confidence 788999999774332 238999974 1111 1 11223444433211 1236899999999
Q ss_pred CCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 700 HDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.+|+|.|.|.+.......++.+.|.|.
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999977778888888874
No 312
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.85 E-value=3.5e-05 Score=68.64 Aligned_cols=72 Identities=17% Similarity=0.332 Sum_probs=50.4
Q ss_pred eEEecCcEEEEEEEcCC-CCeeEEeeCCee--cC--------Cc-c-----cCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 38 TAVVGSRVTLPCRVIDK-TGVLQWTKDDFA--LG--------PH-R-----NLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 38 ~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~--l~--------~~-~-----~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
.+.+|++|+|.|.+... ...+.|+|.... -. .. . ......|+.... ....++|+|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR--SSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe--cCCEEEEEECCCCHH
Confidence 46799999999998654 457999987643 11 00 0 001124565533 336789999999999
Q ss_pred CCceEEEEEEe
Q psy17146 101 DDARYQCQVST 111 (1011)
Q Consensus 101 D~G~Y~C~~~~ 111 (1011)
|+|.|.|.+..
T Consensus 80 DsgtY~Ca~~~ 90 (104)
T cd05720 80 NEGYYFCSVAS 90 (104)
T ss_pred HCEEEEEEEcc
Confidence 99999999863
No 313
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.85 E-value=5.1e-05 Score=66.83 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=58.1
Q ss_pred eecCCCcEEEEEEccCCCC-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 144 YTTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~g~P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
...+++.++|.|.+.+.+| ..+++|+||+..+..+..........+..+...+.|.+......+...|+|++.+.....
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l~~ 92 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGLSS 92 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCCCC
Confidence 3446788999999777788 678999999988865433322233334467777889998877778899999999976543
No 314
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.84 E-value=0.00011 Score=60.86 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=51.8
Q ss_pred EEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 151 IELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 151 v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
++|.|.+.+.+|+ ..++|+||+..+..+..........+..+...+.|.|.....++...|+|.+.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~ 72 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL 72 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence 6899997777787 699999998875554333222223344677778899988888889999999998643
No 315
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.83 E-value=3.1e-05 Score=65.57 Aligned_cols=66 Identities=26% Similarity=0.371 Sum_probs=46.9
Q ss_pred cEEEEEEEcCCCC---eeEEeeCCeecC-----Cc----ccC---CCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 44 RVTLPCRVIDKTG---VLQWTKDDFALG-----PH----RNL---SGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 44 ~v~L~C~v~~~~~---~v~W~k~~~~l~-----~~----~~~---~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
+|+|+|.+..... .+.|++...... .. ... ...+|+.+......+.++|+|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4899999987432 799998653110 00 000 22368887766557889999999999999999996
Q ss_pred E
Q psy17146 109 V 109 (1011)
Q Consensus 109 ~ 109 (1011)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
No 316
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.83 E-value=5.9e-05 Score=67.64 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=53.2
Q ss_pred eeecCCcEEEEEEEEec-CCCCeEEEEECCe-----Eec----------ccCCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 639 FGIPGDTARVECSAFSI-PPPEKVTWSYRGE-----EIG----------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~-----~l~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
.+.+|++++|.|.+.+. +.. .+.|+|... .+. .....++.+..+. .....+|+|.+++.+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~sL~I~~v~~~D 78 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSY-YIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDS--SKSSFTLTISSLQPED 78 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcc-eEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEec--cCCEEEEEECCCCHHH
Confidence 46789999999999976 445 899998532 111 1123445444321 1246799999999999
Q ss_pred CEEEEEEEEcCCC
Q psy17146 703 FGVYNCSVSNPYG 715 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G 715 (1011)
+|.|.|.+.+..+
T Consensus 79 ~G~Y~C~v~~~~~ 91 (105)
T cd00099 79 SAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEEEecCCC
Confidence 9999999998876
No 317
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.82 E-value=0.00011 Score=62.29 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=45.2
Q ss_pred EEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 646 ARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 646 v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
++|.|.+.+. |.+ .|+|+++|+++... .......+.......+.|.+.....++.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~-~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAA-TIRWFKGDKELKGV--KLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCC-eEEEEECCEEccCc--eeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 6899999876 777 99999999998631 111111110001134566666555566679999999988753
No 318
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.81 E-value=0.00025 Score=63.36 Aligned_cols=83 Identities=20% Similarity=0.325 Sum_probs=58.4
Q ss_pred CCcEEEEEEEEecCC----------CCeEEEEEC-----Ce-----Eecc----------cCCCCeEEecCCcCccceeE
Q psy17146 643 GDTARVECSAFSIPP----------PEKVTWSYR-----GE-----EIGV----------GSSDDYSVLEDPLKEGIKST 692 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~----------p~~v~W~~~-----g~-----~l~~----------~~~~~~~~~~~~~~~~~~~~ 692 (1011)
|.+++|.|.+.-.|. ...|.|++- |+ .+-. ...+|..+..+... ....+
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~-~g~as 80 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPED-QGDAS 80 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCc-CCceE
Confidence 678999999986542 237999873 11 1111 11234444332211 13589
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 693 LIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 693 L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|.|.+++.+|+|.|.|.+.+.....+..+.|.|.
T Consensus 81 L~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 81 LTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 9999999999999999999999999999999885
No 319
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.74 E-value=0.00011 Score=67.26 Aligned_cols=76 Identities=16% Similarity=0.337 Sum_probs=52.9
Q ss_pred CCceeeecCCcEEEEEEEEe--cCCCCeEEEEEC--CeEe----cc-----------cCCCCeEEecCCcCccceeEEEE
Q psy17146 635 HRTQFGIPGDTARVECSAFS--IPPPEKVTWSYR--GEEI----GV-----------GSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g--~p~p~~v~W~~~--g~~l----~~-----------~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
+....+.+|++|+|.|.+.+ .+.+ .+.|+|. |... .. ....++.+..+. ......|+|
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I 81 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTT-YIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDV--GKSTSTLTI 81 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCcccc-EEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEEC--CCCEEEEEE
Confidence 34556889999999999987 5666 8999995 2211 00 113455544320 114678999
Q ss_pred cCCCCCCCEEEEEEEEcC
Q psy17146 696 RESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a~N~ 713 (1011)
.+++.+|+|.|.|.+...
T Consensus 82 ~~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 82 QNLEKEDSATYYCAYWES 99 (116)
T ss_pred EECCHHHCEEEEEEEecC
Confidence 999999999999998643
No 320
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.72 E-value=0.00011 Score=64.71 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=49.1
Q ss_pred eeecCCcEEEEEEEEec--CCCCeEEEEECCe--Ee---cc-------cCCCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 639 FGIPGDTARVECSAFSI--PPPEKVTWSYRGE--EI---GV-------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~--p~p~~v~W~~~g~--~l---~~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
.+.+|++|+|.|.+.+. ... .+.||+... .. .. ....++.... ......|+|.+++.+|+|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~-~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~----~~~~~~L~I~~~~~~Dsg 76 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGN-YVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK----SGNTASLTISGAQTEDEA 76 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCC-CEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc----cCCEEEEEECCCChhhCE
Confidence 46789999999998765 344 699998422 11 10 1123455433 234678999999999999
Q ss_pred EEEEEEEcC
Q psy17146 705 VYNCSVSNP 713 (1011)
Q Consensus 705 ~Y~C~a~N~ 713 (1011)
.|.|.+.+.
T Consensus 77 ~Y~C~~~~~ 85 (98)
T cd04984 77 DYYCQVWDS 85 (98)
T ss_pred EEEEEEccC
Confidence 999998764
No 321
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.70 E-value=0.00016 Score=65.85 Aligned_cols=78 Identities=21% Similarity=0.408 Sum_probs=56.4
Q ss_pred cCCceEEEcCCCcEEEEEEEe-cCCCCeEEEEecCCc-----ee---------------------e----cCCCcEEEee
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSD-----KV---------------------V----GNSPNLTLLM 597 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~-g~p~p~v~W~k~~~~-----~~---------------------~----~~~~~L~I~~ 597 (1011)
..|..+.+.+|+++.|.|... ......+.|++.... +. . ....+|+|.+
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN 85 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence 346678899999999999999 456669999985431 11 0 0124699999
Q ss_pred cCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 598 TSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
++.+|+|.|.|.+...........+.|.|
T Consensus 86 l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 86 LQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp ESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999999743344444555544
No 322
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.70 E-value=0.00035 Score=58.10 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=48.2
Q ss_pred EEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC-eEEEEEE
Q psy17146 646 ARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS-DSVEIML 723 (1011)
Q Consensus 646 v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l 723 (1011)
+.|.|.+.|. |.+ .|+|+++|+++... ... ...........++|.|..-..+|...|+|.|.|..-. ......|
T Consensus 2 ~~L~C~s~gSkP~A-~I~W~k~~~~l~~~--~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L 77 (82)
T cd05883 2 IELNCTAMASKPAA-TIRWFKGNKELTGK--STV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYL 77 (82)
T ss_pred EEEEEEecCCCCCC-EEEEEECCEECcCc--ccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEE
Confidence 6899999876 555 99999999999742 111 0011011224678888665555555999999997642 3444444
Q ss_pred Ee
Q psy17146 724 KP 725 (1011)
Q Consensus 724 ~V 725 (1011)
.|
T Consensus 78 ~V 79 (82)
T cd05883 78 EV 79 (82)
T ss_pred EE
Confidence 44
No 323
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.69 E-value=0.0002 Score=62.18 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=52.7
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC--CCe--eEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK--TGV--LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~--~~~--v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+.+.+....+.+|+.++|.|.+.+. .+. |.|||++..+........ ..+......+|++..-+.+|...
T Consensus 3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~------~~~~~~~~stlt~~~~r~D~g~~ 76 (100)
T cd05755 3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDN------TKSPVNAPATITITVDREDHGAN 76 (100)
T ss_pred eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccc------cCCCceeEEEEEEecchhhCCcE
Confidence 46677777788999999999999984 334 799999988743211100 01112234467776555445559
Q ss_pred EEEEEEeCC
Q psy17146 105 YQCQVSTGI 113 (1011)
Q Consensus 105 Y~C~~~~~~ 113 (1011)
|+|+|.+..
T Consensus 77 ~sC~A~l~l 85 (100)
T cd05755 77 FSCETELDL 85 (100)
T ss_pred EEEEEEecc
Confidence 999998853
No 324
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.68 E-value=0.072 Score=56.35 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=70.4
Q ss_pred CCcccccCCcEEEEEEeec--CCCccEEEEEECCeecCCC-------------------------------cCccEEEEe
Q psy17146 311 GSNRLVEGTDVRLYCKAEA--NPSHMKYRWYINDQPVPAA-------------------------------ASATELYLT 357 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~~--~p~~~~i~W~k~g~~l~~~-------------------------------~~~~~L~I~ 357 (1011)
.+..+..|..+.|.|.... +..-..+.|+-.|-++... -..++|.|+
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 3456677999999998764 3222378998776665421 124789999
Q ss_pred ecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCC-cEEEEeecCCC--CCCceEEEeCC
Q psy17146 358 NITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGA-GVNLLCDVDGN--PAPEITWIHED 428 (1011)
Q Consensus 358 ~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~-~v~l~C~~~g~--p~p~v~W~k~~ 428 (1011)
++..+ .+|-|.|+|....-..+...-|.|...-.|.. ..+|. .-...|.+-.. -++++.|.-+|
T Consensus 352 ka~I~-N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W------~~e~~n~T~V~Cyv~sy~~kp~si~wkvnG 418 (500)
T PHA02914 352 KAHIN-NAGCYEAQAFMGKFKEECRHCFKVADHVFFKW------NTEGDNETKVACYAAQYDMQPFSILWKSNG 418 (500)
T ss_pred eEEEE-cCCceEEEEecCcchhhhhhheEeccEEEEEE------EeccCceEEEEEEEEecccCCceeEEEEcc
Confidence 99998 99999999976533333333344433222221 12333 34677988443 35579998876
No 325
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.67 E-value=0.00036 Score=60.48 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=51.7
Q ss_pred CcEEEEEEEEecCCCCeEEEEECCe----Eecc-----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 644 DTARVECSAFSIPPPEKVTWSYRGE----EIGV-----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 644 ~~v~L~C~~~g~p~p~~v~W~~~g~----~l~~-----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+.++|.|.....-...+|+|.|... .+.. .-.+|...... ....++|+|.+++.+|+|.|+|
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~---~~~d~sI~i~nvt~~D~G~Y~C 77 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNS---TREDMSLSFNNATEEDVGLYCC 77 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecC---CCCccEEEEcCCCcccCEEEEE
Confidence 4689999986433333789998532 2211 11133333321 1235899999999999999999
Q ss_pred EEEc-CCCCeEEEEEEE
Q psy17146 709 SVSN-PYGSDSVEIMLK 724 (1011)
Q Consensus 709 ~a~N-~~G~~~~~~~l~ 724 (1011)
.+.+ +.|+.++.|.|.
T Consensus 78 ~~~t~P~g~~~~~i~~~ 94 (96)
T cd05889 78 SLVTYPQGSWEKVIEVV 94 (96)
T ss_pred EEEeCCCCCeEEEEEEE
Confidence 9876 478888888763
No 326
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.66 E-value=0.0004 Score=62.11 Aligned_cols=77 Identities=21% Similarity=0.359 Sum_probs=48.1
Q ss_pred eeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE-EEEEEEEcCCC
Q psy17146 638 QFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG-VYNCSVSNPYG 715 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G-~Y~C~a~N~~G 715 (1011)
.....|+.++|.|.+.|+ |..+.++|+|||+.+.... .......+.......+.|.+.. ...|.| .|+|.+.+...
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~-~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQ-PNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccc-cceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence 345578889999999987 6556999999999986321 1111111100111345676665 344444 59999998754
Q ss_pred C
Q psy17146 716 S 716 (1011)
Q Consensus 716 ~ 716 (1011)
.
T Consensus 94 ~ 94 (111)
T cd05772 94 Q 94 (111)
T ss_pred C
Confidence 3
No 327
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.66 E-value=0.00024 Score=61.45 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=48.3
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
.++.++|.|.+.|. |..+.|+|++||..+..+.........+.......+.|.|..-...+...|+|.+.......+
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~ 90 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFE 90 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeee
Confidence 45679999999996 777799999999987421111011111101112345677775555566799999998765433
No 328
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.65 E-value=0.00024 Score=61.54 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=54.0
Q ss_pred CCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 147 EDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
.++.+.|.|.+.+.+|. .+++|+|++..+..+..........+..+...+.|.+......+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 35668999997777886 7899999988764432222222233337777888988877667889999999987554
No 329
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.65 E-value=0.0003 Score=61.16 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=42.5
Q ss_pred CCcEEEEEEEEec-CCCCeEEEEECCeEecccC-CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 643 GDTARVECSAFSI-PPPEKVTWSYRGEEIGVGS-SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 643 G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
|+.++|.|.+.|+ |.++.++|+++|+.+..+. ...+....+ ......+.|.|.. .+...|+|.+.+..-
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d-~ty~~~s~l~v~~---~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGD-GTYQLWVTLEVPP---EDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCC-CeEEEEEEEEECC---CCCCEEEEEEEeCCC
Confidence 7889999999996 6667899999997433211 111111110 0011234555544 477899999987754
No 330
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.59 E-value=0.00043 Score=58.54 Aligned_cols=68 Identities=25% Similarity=0.381 Sum_probs=45.8
Q ss_pred EEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcC--ccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 646 ARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK--EGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 646 v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~--~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
++|+|.+.|. |.+ .|+|++||+++... . ..+..+... ....+.|.|......|...|+|.|.|.....
T Consensus 2 ~~LtC~a~g~~P~~-~ItW~k~g~~l~~~--~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAA-NIKWRKGDQELEGA--P-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCC-EeEEEECCEECCCc--c-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 6899999987 777 99999999988632 1 122222111 0123567766656667779999999987643
No 331
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.58 E-value=0.00022 Score=62.74 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=48.2
Q ss_pred eeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 639 FGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
....++.++|.|.+.|. |..+.|+|++||+++..+....-...+........+.|.+......+...|+|.|....-
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 34467889999999986 667799999999998532110000111100111245676766555556799999987653
No 332
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.58 E-value=0.00036 Score=57.87 Aligned_cols=69 Identities=25% Similarity=0.372 Sum_probs=43.7
Q ss_pred cEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEe-cCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 645 TARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVL-EDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 645 ~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~-~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
.++|.|.+.|. |..+.++|+|||+++..+. ...... +........+.|.|......+...|+|.|.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~-~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGV-STTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCE-EECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 36899999997 6656999999999754211 111111 110011135677776666667779999998764
No 333
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.56 E-value=0.00045 Score=60.80 Aligned_cols=79 Identities=13% Similarity=0.189 Sum_probs=59.6
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---C-CeeEEeeCCeec-------CCcc-cC-CCCcceEEeecCCCceeEEEEeecc
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---T-GVLQWTKDDFAL-------GPHR-NL-SGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~-~~v~W~k~~~~l-------~~~~-~~-~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+++....+..|+.|+|.|.+++. . ..+.|+|..... .... .. ....|+.+.++......+|+|.+++
T Consensus 3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~ 82 (115)
T cd05721 3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR 82 (115)
T ss_pred eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence 45567788999999999999773 2 378999874331 0111 11 2347888888888899999999999
Q ss_pred cCCCceEEEEEE
Q psy17146 99 LDDDARYQCQVS 110 (1011)
Q Consensus 99 ~~D~G~Y~C~~~ 110 (1011)
.+|++.|.|...
T Consensus 83 a~DTa~Y~Ca~e 94 (115)
T cd05721 83 ANQTDIYFCKIE 94 (115)
T ss_pred HHHCeEEEEEee
Confidence 999999999764
No 334
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.53 E-value=0.00081 Score=57.89 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=43.3
Q ss_pred eecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccc---eeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 640 GIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI---KSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
+..|+..+|.|.+.|+ |..+.++|+|||+++. +... -.+..+ .++. .+.|.+. +.+...|+|.+....
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~-~~~~p~--~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~ 83 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQ-SDLSFS--KDWTFYLLKSTEFT---PTKGDEYACRVRHNS 83 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEE-CcEEEC--CCCCEEEEEEEEEC---CCCCCeEEEEEEECC
Confidence 3456777999999995 7777999999999876 2211 111111 1222 3344444 456668999998753
No 335
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.53 E-value=0.00047 Score=60.81 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=51.2
Q ss_pred eeecCCcEEEEEEEEec-CCCCeEEEEECCeE-----e------cccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 639 FGIPGDTARVECSAFSI-PPPEKVTWSYRGEE-----I------GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~-----l------~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+.+|++|+|.|..... ... .+.|+|.... + ......++.+..+. ......|+|.+++.+|+|.|
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~-~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y 79 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSY-EKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDP--DNGVFTVTLNQLRKEDAGWY 79 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCc-EeEeECCCCCCCCeEEECCCccccccCCCEEEEecC--CCCEEEEEEcCCCHHHCEEE
Confidence 57899999999998753 334 7899985421 1 01123456554321 23467899999999999999
Q ss_pred EEEEEcCC
Q psy17146 707 NCSVSNPY 714 (1011)
Q Consensus 707 ~C~a~N~~ 714 (1011)
.|.+.+..
T Consensus 80 ~C~~~~~~ 87 (98)
T cd05716 80 WCGVGDDG 87 (98)
T ss_pred EEEcccCC
Confidence 99987754
No 336
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.52 E-value=0.00033 Score=59.11 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=44.9
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCC-cCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP-LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
++|.|.+.|.-++..|+|+|||+.+... ......... ......+.|.|......+...|+|.|.|..-..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~--~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~ 72 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDV--KYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA 72 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCc--eeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence 6899999986444599999999997531 111111110 001235677777655666669999999887543
No 337
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.52 E-value=0.00072 Score=58.42 Aligned_cols=70 Identities=26% Similarity=0.319 Sum_probs=43.0
Q ss_pred ecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCC-CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 641 IPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSS-DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 641 ~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
..|+.++|.|.+.|+ |..+.++|++||.++..+.. .......+ ......+.|.+.. .+...|+|.+....
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~D-gty~~~s~L~v~~---~~~~~ytC~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQD-LSFQKFSYLNFTP---EEGDIYSCIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCC-CcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence 346668999999996 77779999999998753210 11111110 0011234566654 34558999998754
No 338
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.48 E-value=0.00092 Score=55.38 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=48.8
Q ss_pred ceEecCCCcEEEEeecCCCC--CCceEEEeCCCcee---eccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 399 SVQVDRGAGVNLLCDVDGNP--APEITWIHEDSDKV---VGNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 399 ~~~v~~G~~v~l~C~~~g~p--~p~v~W~k~~~~~~---~~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
+..+..|++++|+|.....+ .+.|+|+..+.... ..+...|.+..++..|+|.++|.+..
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~ 72 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSV 72 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEE
Confidence 34688899999999995544 45999998876643 23567899999999999999999974
No 339
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.47 E-value=0.00049 Score=62.87 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=52.4
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEec----------ccCCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIG----------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
+....+.+|++|+|.|..........+.|+|. +..+. ....+|+.+..+. ......|+|.+++.+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~--~~~~~sL~I~~~~~~D 83 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQK--AQKSISLTISALQLED 83 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEec--cCCEEEEEECCCCHHH
Confidence 44567899999999999876433337999983 22111 0123456554211 2235789999999999
Q ss_pred CEEEEEEEEcC
Q psy17146 703 FGVYNCSVSNP 713 (1011)
Q Consensus 703 ~G~Y~C~a~N~ 713 (1011)
+|.|.|.+.+.
T Consensus 84 sg~Y~C~~~~~ 94 (116)
T cd07706 84 SAKYFCALSTL 94 (116)
T ss_pred CEEEEEEEECC
Confidence 99999999853
No 340
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.47 E-value=0.0011 Score=57.59 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=44.7
Q ss_pred ecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccc---eeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 641 IPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI---KSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 641 ~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
..|+.++|.|.+.|+ |..+.++|++||+.+..+.. ......+ .++. .+.|.+. ..+...|+|.+......
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~-~~~~~~~--~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVV-STELIPN--GDWTYQILVMLETT---PSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCce-ecceEEC--CCCcEEEEEEEEEc---CCCCCEEEEEEEeCCCC
Confidence 467889999999996 76778999999998764210 0111111 1222 3445443 34556899999876543
No 341
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.46 E-value=0.00082 Score=58.20 Aligned_cols=77 Identities=14% Similarity=0.059 Sum_probs=45.7
Q ss_pred cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 634 SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
.+.......++.++|.|.+.|+ |..+.++|++||..+..+.. ......+.......+.|.|..-.. ...|+|.+..
T Consensus 7 ~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~-~~~~~~~~dty~~~S~L~vt~~~~--~~~ysC~V~H 83 (96)
T cd07697 7 SPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQ-KSEKDKDNDVYSTTSWLTVTKDSL--GKKFRCIYKH 83 (96)
T ss_pred CCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeE-eccEecCCCEEEEEEEEEECchhC--CCeEEEEEEE
Confidence 3443444456789999999995 77778999999998753211 011111100111245666654332 2359999987
Q ss_pred C
Q psy17146 713 P 713 (1011)
Q Consensus 713 ~ 713 (1011)
.
T Consensus 84 ~ 84 (96)
T cd07697 84 E 84 (96)
T ss_pred C
Confidence 4
No 342
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.41 E-value=0.0016 Score=56.42 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=51.2
Q ss_pred cCCCcEEEEEEccCCCCCc-EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 146 TEDREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+|+.++|.|.+.+.+|.. +++|+||+..+..+.............+...+.|.+.. .+...|+|++.+.....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~l~~ 86 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSSLQE 86 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCCCCC
Confidence 3578899999977778865 89999999887664222222222223566667777654 46779999999976543
No 343
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.40 E-value=0.00092 Score=58.12 Aligned_cols=77 Identities=22% Similarity=0.399 Sum_probs=52.6
Q ss_pred ecCCCcEEEEEEccCC-CC-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 145 TTEDREIELECISANG-KP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 145 v~eg~~v~L~C~~~~g-~P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+..|+.++|.|.+.+. +| ...++|+|++++..... ........+..+...+.|.+......+.-.|+|.+.+.....
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~-~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~~ 89 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKAS-IQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLPT 89 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEE-ecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCCC
Confidence 4458899999996666 56 45899999876543321 111122233367777889888766667789999999976543
No 344
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.39 E-value=0.0014 Score=57.06 Aligned_cols=71 Identities=18% Similarity=0.387 Sum_probs=47.8
Q ss_pred CCcEEEEEEccCCCCCc-EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 148 DREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
|+.++|.|.+.+.+|.. .++|+|+++.+..+..........+..+...+.|.|.. .+.+.|+|.+.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCCC
Confidence 67899999955556764 89999998644333222212222333566667788755 3889999999987553
No 345
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.39 E-value=0.0012 Score=54.75 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=54.1
Q ss_pred eEEEcCCCcEEEEEEEecCCCC--eEEEEecCCcee---ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDKV---VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~p--~v~W~k~~~~~~---~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
+-.+..|++++|.|.....+.| .|+|+..+.... ..+..+|.+.++...|+|.++|.+.- ........+.+.|
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~-~~k~~~~~~~V~V 85 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSV-NSSEKTLKLDIKV 85 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEE-CceEEEEEeeEEE
Confidence 3468899999999999665554 999998776533 34668999999999999999999974 2233344444444
No 346
>KOG0613|consensus
Probab=97.39 E-value=0.0045 Score=75.34 Aligned_cols=135 Identities=12% Similarity=0.078 Sum_probs=88.5
Q ss_pred ccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeec
Q psy17146 266 HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPV 345 (1011)
Q Consensus 266 ~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l 345 (1011)
.....|+.+|..+..... .......++....+.|.....+.+ .+.|+.++...
T Consensus 218 ~~~~~~~~~g~~i~~~~~--------------------------~~~s~t~e~s~~~i~~~l~~~~G~-~~~~~~~~l~e 270 (1205)
T KOG0613|consen 218 EPLERWEILGELIAPGSA--------------------------PSMSVTLEASDRKIQLTLRAPRGP-YSAHILGYLIE 270 (1205)
T ss_pred ccchhhhhcccccCCCCc--------------------------cccccccchhheeeeEEeecCCCc-hHHHHhcchhh
Confidence 368899999988776542 122345677788899999988876 77887776554
Q ss_pred CCC-cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEe----------------cceEe---eCCCceEecCC
Q psy17146 346 PAA-ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY----------------GPRFR---ARPYSVQVDRG 405 (1011)
Q Consensus 346 ~~~-~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~----------------~P~~~---~~p~~~~v~~G 405 (1011)
... .....+.|.+.... +.+.|+|...+..+.....+...+.. +|... .....+.+..+
T Consensus 271 ~~~~~~~~t~~i~~~~~~-~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~ 349 (1205)
T KOG0613|consen 271 QRKHKGGNTKTIQNDGPE-PELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDN 349 (1205)
T ss_pred hcccCCCccccccccCCc-cccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccC
Confidence 443 34556667776666 77889999888777665444333322 11111 11223455666
Q ss_pred CcEEEEeecCCCCCCc-eEEEeCC
Q psy17146 406 AGVNLLCDVDGNPAPE-ITWIHED 428 (1011)
Q Consensus 406 ~~v~l~C~~~g~p~p~-v~W~k~~ 428 (1011)
..+.+.|...+.+.+. +.|++..
T Consensus 350 ~~v~m~~~~~~~~~p~~~~~~~~~ 373 (1205)
T KOG0613|consen 350 TLVEMPTALSGTQKPDEAQGYHGE 373 (1205)
T ss_pred cceeecccccCCcCCchheeeccc
Confidence 7788888888887775 8888765
No 347
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.38 E-value=0.00072 Score=60.69 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=56.3
Q ss_pred eecCCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEE-EeeecCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCC
Q psy17146 144 YTTEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVT-EEASVDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTAD 220 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g 220 (1011)
++.+++.+.|.|.+.+.+|. .+++|+||+..+..+.... .....++..+...+.|.|...+..+ ...|+|.+.+...
T Consensus 14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~ 93 (115)
T cd05769 14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGG 93 (115)
T ss_pred HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCC
Confidence 34457789999997777887 5899999998876543211 1222222477778899998776544 7899999999865
Q ss_pred Cc
Q psy17146 221 RT 222 (1011)
Q Consensus 221 ~~ 222 (1011)
..
T Consensus 94 ~~ 95 (115)
T cd05769 94 TD 95 (115)
T ss_pred cc
Confidence 44
No 348
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.35 E-value=0.001 Score=53.90 Aligned_cols=69 Identities=28% Similarity=0.434 Sum_probs=47.7
Q ss_pred EEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 646 ARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 646 v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
+.|.|.+.+.+.. .+.|++++......... ..............|.|.++...|.|.|.|.+.+..+..
T Consensus 1 ~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 69 (74)
T cd00096 1 VTLTCLASGPPPP-TITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTV 69 (74)
T ss_pred CEEEEEecCCCCC-cEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCcCcE
Confidence 4789999985555 89999998776532211 011111112346789999999999999999999887433
No 349
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.34 E-value=0.00078 Score=60.43 Aligned_cols=72 Identities=17% Similarity=0.345 Sum_probs=47.6
Q ss_pred eeecCCcEEEEEEEEecCCCCeEEEEECCeE-----ec----cc-----------CCCCeEEecCCcCccceeEEEEcCC
Q psy17146 639 FGIPGDTARVECSAFSIPPPEKVTWSYRGEE-----IG----VG-----------SSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~-----l~----~~-----------~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
.+.+|++|+|.|.+.+......+.|||.... +. .. ...++.+... .......|+|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~--~~~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVT--SDSSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEE--CCCCEEEEEECCC
Confidence 4778999999999877544327999984321 00 00 0223433211 1233568999999
Q ss_pred CCCCCEEEEEEEEc
Q psy17146 699 RHDHFGVYNCSVSN 712 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N 712 (1011)
+.+|+|.|.|...+
T Consensus 80 ~~~Dsg~YyCa~~~ 93 (107)
T cd07700 80 KPEDSGTYFCMTVG 93 (107)
T ss_pred CHHHCEEEEEeEcC
Confidence 99999999999864
No 350
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.32 E-value=0.0025 Score=55.04 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=49.2
Q ss_pred CCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 148 DREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
++.+.|.|.+.+.+|. ..++|+||+..+..+.............+...+.|.+.. ++...|+|.+.+...
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~l 85 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWGL 85 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCCC
Confidence 5668999997777884 689999999887654433322333333566667787754 467799999998754
No 351
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.32 E-value=0.0018 Score=54.93 Aligned_cols=73 Identities=18% Similarity=0.341 Sum_probs=54.9
Q ss_pred CCCcEEEEEEccCCCCCc-EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 147 EDREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.++.+.|.|.+.+.+|.. +|+|++++..+..+..........+..+...+.|.+. ..+...|+|++.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~~ 80 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLPE 80 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCCC
Confidence 488999999977778854 8999999988866554443343345577777888887 567779999999986543
No 352
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.32 E-value=0.0006 Score=60.15 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=46.1
Q ss_pred eecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 640 GIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
+..|+.++|.|.+.|+ |..+.++|++||+++............+...++ ..+.|.|..-...+...|+|.|....-
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 4457889999999996 666689999999987532111111111100012 245666654444455689999987543
No 353
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.32 E-value=0.0011 Score=59.48 Aligned_cols=81 Identities=21% Similarity=0.307 Sum_probs=50.6
Q ss_pred eecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCC-eEEecCCcCccceeEEEEcCCCCCC-CEEEEEEEEcCCCC
Q psy17146 640 GIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDD-YSVLEDPLKEGIKSTLIIRESRHDH-FGVYNCSVSNPYGS 716 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~-~~~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~ 716 (1011)
...++.++|.|.+.|+ |..+.|+|++||+.+..+.... .....+.......+.|.|......+ ...|+|.+......
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 4456789999999987 6667999999999876422111 1111110011135677777655434 45899999987665
Q ss_pred eEEE
Q psy17146 717 DSVE 720 (1011)
Q Consensus 717 ~~~~ 720 (1011)
....
T Consensus 95 ~~~~ 98 (115)
T cd05769 95 DTDK 98 (115)
T ss_pred ccee
Confidence 5443
No 354
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.31 E-value=0.0018 Score=59.39 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=51.2
Q ss_pred cCCceeeecCCcEEEEEEEEecC-----CCCeEEEEECCe-----E-ecc---------cCCCCeEEecCCcCccceeEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIP-----PPEKVTWSYRGE-----E-IGV---------GSSDDYSVLEDPLKEGIKSTL 693 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p-----~p~~v~W~~~g~-----~-l~~---------~~~~~~~~~~~~~~~~~~~~L 693 (1011)
.|....+.+|+.|+|.|...... ....+.|+|... . +.. ...+|+.+..+ .......|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~--~~~~~~sL 82 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGD--LGKKNCSL 82 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecC--CCCCEEEE
Confidence 34556789999999999875332 122689998531 1 110 01234444321 13346789
Q ss_pred EEcCCCCCCCEEEEEEEEcC
Q psy17146 694 IIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 694 ~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
+|.+++.+|+|.|.|.+...
T Consensus 83 ~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 83 LISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEccCChhhCeEEEEEEEcC
Confidence 99999999999999998764
No 355
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.30 E-value=0.0013 Score=57.27 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=47.2
Q ss_pred CCceeeecCCcEEEEEEEEec--CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 635 HRTQFGIPGDTARVECSAFSI--PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~--p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
|....+..|+.++|.|.+.|. |..+.++|+|||........... ..+........+.|.+..-...+.-.|+|.+..
T Consensus 6 Ps~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~-~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 6 PSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPP-ESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred cCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEeccc-ccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 333446678999999999999 77778999999754321111111 111100011234566655443334489999987
Q ss_pred CCCC
Q psy17146 713 PYGS 716 (1011)
Q Consensus 713 ~~G~ 716 (1011)
..-.
T Consensus 85 ~~l~ 88 (96)
T cd07696 85 PDLP 88 (96)
T ss_pred CCCC
Confidence 7543
No 356
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.28 E-value=0.00099 Score=58.77 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=52.5
Q ss_pred ecCCCcEEEEEEccCCCCCc-EEEEEeCCceeeeceeEEEeeecC---CceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 145 TTEDREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEEASVD---GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 145 v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~~~~~~~~~~~---~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+..|+.++|.|.+.+.+|.. .++|+||+.++............+ ...+...+.|.|..-...+...|+|.+.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 34578899999977777854 789999998765432111111111 24666678898876666677889999998755
Q ss_pred C
Q psy17146 221 R 221 (1011)
Q Consensus 221 ~ 221 (1011)
.
T Consensus 93 ~ 93 (102)
T cd05768 93 P 93 (102)
T ss_pred C
Confidence 3
No 357
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.26 E-value=0.0014 Score=56.46 Aligned_cols=86 Identities=28% Similarity=0.441 Sum_probs=50.7
Q ss_pred CeeecCCceeeecCCcEEEEEEEE-ecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTIISHRTQFGIPGDTARVECSAF-SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~~~~~~~v~~G~~v~L~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
|.|..........|+.+.|+|.+. |.|.| .|+|+.++..+.. .................+.|.+..-...+...++|
T Consensus 1 p~I~~~~~~~~~~~~~~~~~C~s~~~~P~~-~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C 78 (89)
T PF08205_consen 1 PEITPNPSLLEGEGEEVTLTCSSSGGYPPP-QITWYLDGGPVVA-SNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTC 78 (89)
T ss_dssp EEEEEECSEEESSTEEEEEEEEEEEEBS-E-EEEEEETTCEECE-EEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEE
T ss_pred CEeeCCCeeEcccceEEEEEEEeCCeECCe-EEEEEECCCceee-eeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEE
Confidence 344433333333378999999665 66888 9999999988721 00111111110011124678877655566779999
Q ss_pred EEEcCCCCe
Q psy17146 709 SVSNPYGSD 717 (1011)
Q Consensus 709 ~a~N~~G~~ 717 (1011)
.|.|..-..
T Consensus 79 ~~~~~~~~~ 87 (89)
T PF08205_consen 79 RASHPALSQ 87 (89)
T ss_dssp EEEETTCCE
T ss_pred EEECCccCC
Confidence 999987544
No 358
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.26 E-value=0.0032 Score=54.22 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=49.9
Q ss_pred CCCcEEEEEEccCCCC-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 147 EDREIELECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 147 eg~~v~L~C~~~~g~P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
.|+...|.|.+.+.+| ...++|+|||..+. +..........+..+...+.|.+. ..+...|+|++.+...
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~l 84 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNSM 84 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECCC
Confidence 4667799999777688 46899999999876 444333333333466666777775 4688889999999654
No 359
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.23 E-value=0.00095 Score=59.42 Aligned_cols=69 Identities=17% Similarity=0.398 Sum_probs=46.4
Q ss_pred eeecCCcEEEEEEEEecCCCCeEEEEECCe----E---ec-ccC------------CCCeEEecCCcCccceeEEEEcCC
Q psy17146 639 FGIPGDTARVECSAFSIPPPEKVTWSYRGE----E---IG-VGS------------SDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~----~---l~-~~~------------~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
.+.+|++|+|.|.+...... .+.|+|... . |. ... ..++.... ......|+|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~-~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~----~~~~~~L~I~~~ 76 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPT-GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR----SSNSFVLTLKNF 76 (104)
T ss_pred cccCCCeEEEEEEecCCCCC-cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe----cCCEEEEEECCC
Confidence 36789999999998655444 699998432 1 11 000 12233222 224568999999
Q ss_pred CCCCCEEEEEEEEc
Q psy17146 699 RHDHFGVYNCSVSN 712 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N 712 (1011)
+.+|+|.|.|.+.+
T Consensus 77 ~~sDsgtY~Ca~~~ 90 (104)
T cd05720 77 QKENEGYYFCSVAS 90 (104)
T ss_pred CHHHCEEEEEEEcc
Confidence 99999999998764
No 360
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.20 E-value=0.0022 Score=55.56 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=50.6
Q ss_pred eecCCCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 144 YTTEDREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
++..++.+.|.|.+.+.+|. .+++|+|||..+..+.........++ .+...+.|.|.... ....|+|.+.+..
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 33346779999997777884 57899999988765544333333333 77777888886543 3455999999854
No 361
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.19 E-value=0.0014 Score=55.59 Aligned_cols=69 Identities=22% Similarity=0.404 Sum_probs=45.7
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
.++.++|.|.+.|+ |..+.|+|++||..+............ .++ ..+.|.+. ..+...|+|.+......
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~---~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPN---SDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEE---TTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccc---cccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 48899999999986 667789999999988642111111111 122 24566666 45555899999887654
No 362
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.12 E-value=0.002 Score=58.79 Aligned_cols=75 Identities=17% Similarity=0.355 Sum_probs=49.5
Q ss_pred CCceeeecCCcEEEEEEEEecC--CCCeEEEEECC---eE--ec-c-----------cCCCCeEEecCCcCccceeEEEE
Q psy17146 635 HRTQFGIPGDTARVECSAFSIP--PPEKVTWSYRG---EE--IG-V-----------GSSDDYSVLEDPLKEGIKSTLII 695 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p--~p~~v~W~~~g---~~--l~-~-----------~~~~~~~~~~~~~~~~~~~~L~I 695 (1011)
+....+.+|++|+|.|...+.. .. .+.|||.. .+ |. . ...+++....+ .......|+|
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~-~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~--~~~~~~~L~I 80 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSY-GVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRD--TSKSTVYLQL 80 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccc-eEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEE--ccCCEEEEEE
Confidence 4566789999999999986543 34 69999832 11 10 0 01234444321 0122357999
Q ss_pred cCCCCCCCEEEEEEEEc
Q psy17146 696 RESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 696 ~~~~~~d~G~Y~C~a~N 712 (1011)
.+++.+|+|.|.|.+..
T Consensus 81 ~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 81 NSLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCCHHHCEEEEEEEEc
Confidence 99999999999998875
No 363
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.03 E-value=0.0025 Score=51.53 Aligned_cols=66 Identities=30% Similarity=0.546 Sum_probs=46.8
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
+.|.|. ..+.+...+.|++++......... ..............|.|.+++.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~-~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCL-ASGPPPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEE-ecCCCCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999 445788899999987655432221 111222344556789999999999999999998875
No 364
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.92 E-value=0.0052 Score=53.31 Aligned_cols=72 Identities=22% Similarity=0.341 Sum_probs=43.2
Q ss_pred cCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 642 PGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
.++.++|.|.+.|+ |..+.|+|++||+. ..+....-.+..+.......+.|.+........-.|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999996 77779999999998 32110001111110011124566666544323457999998764
No 365
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.89 E-value=0.0027 Score=49.61 Aligned_cols=50 Identities=30% Similarity=0.411 Sum_probs=40.8
Q ss_pred CCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 558 RGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 558 ~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
..+.|.|.|.. ...|.|++ |..+...+..+|.+-....+-.|.|+|.+.+
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC----CCcEEEec-CcccccccccEEeccCcccCCCcceEecCcc
Confidence 35679999965 25699999 6666555588999999999999999999876
No 366
>KOG0196|consensus
Probab=96.82 E-value=0.0013 Score=75.60 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=77.2
Q ss_pred CCC-CCCCCcccccccccccccc-cCCCCC--CCCcCcceeeecCcc------------------------------ccc
Q psy17146 760 KKP-PPGNGIEHHVTADGEKNQC-KESDNS--SNISDIKLEFRTGSS------------------------------VSN 805 (1011)
Q Consensus 760 ~~~-~p~~~~~~~~~~~s~~~~W-~~~d~~--s~I~~Y~ve~~~~~~------------------------------~p~ 805 (1011)
.|| +|.++... +..+++.|.| ++.|.| ..|+..++-.+.... .|.
T Consensus 330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah 408 (996)
T KOG0196|consen 330 RPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAH 408 (996)
T ss_pred CCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccc
Confidence 455 88888777 8899999999 666654 356655554443311 777
Q ss_pred ccccc---c-CCCCCCC-------cccccccccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeec
Q psy17146 806 VHLDY---A-GHDSETG-------SESVHTRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRD 874 (1011)
Q Consensus 806 ~~Y~f---A-~G~g~~s-------s~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~ 874 (1011)
+.|.| | .|.|.-+ +..+.|..++|+.-+.--.... +.++.+++|.. ++..||.++-|.|.|++
T Consensus 409 ~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~----~~~sitlsW~~--p~~png~ildYEvky~e 482 (996)
T KOG0196|consen 409 TNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSR----TSDSITLSWSE--PDQPNGVILDYEVKYYE 482 (996)
T ss_pred cccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeee----ccCceEEecCC--CCCCCCcceeEEEEEee
Confidence 89999 6 6655544 4457777777765443222222 34455779998 67789999999999999
Q ss_pred cCCCC
Q psy17146 875 YNQTL 879 (1011)
Q Consensus 875 ~~~~~ 879 (1011)
++..+
T Consensus 483 k~~~e 487 (996)
T KOG0196|consen 483 KDEDE 487 (996)
T ss_pred ccccc
Confidence 97643
No 367
>KOG1480|consensus
Probab=96.78 E-value=0.00043 Score=78.52 Aligned_cols=187 Identities=17% Similarity=0.289 Sum_probs=107.6
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCC-----CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
..|.|..+|++..+..|.++.|.|..... ...-.|..+.........-....+-. ....+.|..-..+
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~-------~~~si~Isr~~v~ 95 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGV-------REVSIDISRQQVE 95 (909)
T ss_pred CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeE-------Eeeeeeeehhhhh
Confidence 35889999999999999999999998752 12345766543321111100001111 1113445544444
Q ss_pred CCc---eEEEEE--EeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCcee
Q psy17146 101 DDA---RYQCQV--STGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTV 175 (1011)
Q Consensus 101 D~G---~Y~C~~--~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l 175 (1011)
+.| .|.|+- .... + ...+..+.+.+.+. .......+.-..|.++..+.+.|+...+.|...++|+|++..+
T Consensus 96 ~~~~~~d~~cQc~a~~~~-g--~~~s~~a~vr~ay~-rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~ 171 (909)
T KOG1480|consen 96 TSGGPEDYWCQCVAWSDD-G--TVKSRKATVRIAYL-RKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVI 171 (909)
T ss_pred cccCccceeeeeeeecCC-C--cchhhhHHHHHHHH-HHhhccChhhheecccccccccccCcccchhhhhhccccCCCC
Confidence 432 566654 3321 1 11122122111110 0111112223456778899999998899999999999987766
Q ss_pred eeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc-eeEEEEEEEE
Q psy17146 176 MSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT-YKVARLKLLV 232 (1011)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~-~~s~~v~v~v 232 (1011)
.+.... .... ...|+|..+...|.|.|+|+|.|..+.. ...+.+.+.|
T Consensus 172 ~pd~n~--~~~~-------d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv 220 (909)
T KOG1480|consen 172 DPDANV--IRAS-------DHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYV 220 (909)
T ss_pred Cccccc--hhhh-------cCCccccchhhhhcccceeeeehhhccccccceEEEEEE
Confidence 542221 1111 2479999999999999999999987754 2333444443
No 368
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=96.74 E-value=0.24 Score=48.95 Aligned_cols=125 Identities=22% Similarity=0.301 Sum_probs=59.2
Q ss_pred eEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCC-CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 620 AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 620 ~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
+.+.-.|..+|.|.. ....| ...|.+.-.|.. ..+.|+-++.... .......... . ...-+...|++.
T Consensus 73 a~~~P~Vy~~P~vsv----~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~--~~~~~~~~g~-C-~~~pglvnirs~ 141 (211)
T PF02124_consen 73 ATATPSVYPKPRVSV----RFEDG---YAVCTARCVPRGNVTLRWSVGDDPSP--APAATEITGV-C-AEHPGLVNIRSR 141 (211)
T ss_pred cccccceecCCEEEE----EecCC---EEEEEcceeeCCCeEEEEEECCccCC--CCCceeecCc-c-cCCcceeEeecc
Confidence 334444556666542 12222 567888888864 5899998877642 1111111111 0 011223333333
Q ss_pred C--CCCCE--EEEEEEEc-CCCCe--EEEEEEEecC---CCCeEEEEEeeehHHHHHHHhhhheeee
Q psy17146 699 R--HDHFG--VYNCSVSN-PYGSD--SVEIMLKPQK---SFPLLLILTGVIGCVVILVALTMVVILC 755 (1011)
Q Consensus 699 ~--~~d~G--~Y~C~a~N-~~G~~--~~~~~l~V~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 755 (1011)
- ....| +|+|.+.- ..+-. +.+....-.. ..++++.+++++++++++.+++++..+|
T Consensus 142 ~pls~~~~~~~YtC~l~GYP~~~p~f~~~~~yDasP~~~~~p~v~~i~~Vi~g~~~~g~~~~i~alc 208 (211)
T PF02124_consen 142 RPLSDEDGPVEYTCRLIGYPDILPVFEDTATYDASPSAQGFPMVISIIGVICGAGALGLLVLIAALC 208 (211)
T ss_pred cCCCccCCceeEEEEEeeCCCCCCcccceEEEcCCCccCCCcEEEehHHHHHHHHHHHHHHhhEEEE
Confidence 2 22345 89999862 11111 2222221111 1344555556666666666555544444
No 369
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=96.66 E-value=0.0003 Score=60.04 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=46.6
Q ss_pred CCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc---------------------cccccccc---c---CC
Q psy17146 762 PPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A---GH 813 (1011)
Q Consensus 762 ~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A---~G 813 (1011)
++|.++.+.+++.+++.++| ++.++++++.+|.|+++...+ .|.+.|.| | .|
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g 80 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDG 80 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTE
T ss_pred CcCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCc
Confidence 36788999999999999999 554889999999999987644 78889999 3 66
Q ss_pred CCCCC
Q psy17146 814 DSETG 818 (1011)
Q Consensus 814 ~g~~s 818 (1011)
.|++|
T Consensus 81 ~g~~S 85 (85)
T PF00041_consen 81 EGPPS 85 (85)
T ss_dssp EEEEE
T ss_pred CcCCC
Confidence 66553
No 370
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.65 E-value=0.0073 Score=51.58 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=50.1
Q ss_pred CCeeecCCeeeecCCCcEEEEEEccCCCCC--cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEE
Q psy17146 134 PPRIVQGDTLYTTEDREIELECISANGKPP--AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTF 211 (1011)
Q Consensus 134 ~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 211 (1011)
++.|.....+ .+|..++++|.+.+.+|. .++.|+|++..+.... +......+. .......++|.....+|.-.|
T Consensus 3 ~p~i~~~~~l--~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks-~~~~~~~vtftptreD~g~~f 78 (99)
T cd07689 3 DPEILLSGPL--EEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKS-LETKSLEVTFTPTIEDIGKVL 78 (99)
T ss_pred CccCcccCcc--cCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCC-CCCcceeEEEecchhhCCcEE
Confidence 3444444443 579999999998888887 7899999766554422 211110011 111224566666555555589
Q ss_pred EEEEEeCCC
Q psy17146 212 TCQAQNTAD 220 (1011)
Q Consensus 212 ~C~a~n~~g 220 (1011)
+|+|.-..+
T Consensus 79 sC~A~L~l~ 87 (99)
T cd07689 79 VCRAKLHID 87 (99)
T ss_pred EEEEEEeec
Confidence 999986543
No 371
>KOG1480|consensus
Probab=96.64 E-value=0.00047 Score=78.22 Aligned_cols=175 Identities=18% Similarity=0.248 Sum_probs=110.2
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCC----eEEEEecCCceeecCC----------CcEEEeecCCCCC---EEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAP----EITWIHEDSDKVVGNS----------PNLTLLMTSDDLA---GRY 606 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p----~v~W~k~~~~~~~~~~----------~~L~I~~v~~~d~---G~Y 606 (1011)
-|.|...|.+..+..|..+.|.|.+...+.. .-.|..+......... -...|.....++. -.|
T Consensus 24 l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~ 103 (909)
T KOG1480|consen 24 LPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDY 103 (909)
T ss_pred cceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccce
Confidence 4678888999999999999999998776654 4458877655432211 1223332222222 235
Q ss_pred E--EEEEecCCCceeeEEEEE--EcCCCeeecCCceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEecccCCCCeEEe
Q psy17146 607 Y--CKASVMGFPEVGAEATVY--LKGRPTIISHRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVL 681 (1011)
Q Consensus 607 ~--C~a~n~~~~~~s~~~~l~--V~~~P~i~~~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~ 681 (1011)
+ |.|....+...+..+.+. +..+-....+.-+.|..+..+.+.|.. .+.|.. .++|+|++..++. ..++...
T Consensus 104 ~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paa-e~~w~k~e~~~~p--d~n~~~~ 180 (909)
T KOG1480|consen 104 WCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKA-EVEWLKNEVVIDP--DANVIRA 180 (909)
T ss_pred eeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhh-hhhccccCCCCCc--cccchhh
Confidence 4 455542221112111111 111222223445667788888999865 577777 8999999998875 3333333
Q ss_pred cCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC---eEEEEEEEecCC
Q psy17146 682 EDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS---DSVEIMLKPQKS 728 (1011)
Q Consensus 682 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~---~~~~~~l~V~~~ 728 (1011)
. ...|.+..+...|.|+|+|+|.|-.+. ..+.+.+.|...
T Consensus 181 ~-------d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~gg 223 (909)
T KOG1480|consen 181 S-------DHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVNGG 223 (909)
T ss_pred h-------cCCccccchhhhhcccceeeeehhhccccccceEEEEEEcCc
Confidence 2 257999999999999999999999984 456666666654
No 372
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.57 E-value=0.0078 Score=50.61 Aligned_cols=64 Identities=20% Similarity=0.362 Sum_probs=41.9
Q ss_pred cEEEEEEEEecCCC-CeEEEEECCe-----Eecc-----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 645 TARVECSAFSIPPP-EKVTWSYRGE-----EIGV-----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 645 ~v~L~C~~~g~p~p-~~v~W~~~g~-----~l~~-----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
+|+|.|.+.....+ ..+.|++... .+.. ....++.+.... .....+|+|.+++.+|+|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~L~i~~~~~~D~G~Y~ 78 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDT--SKNDVSLTISNLRVEDTGTYY 78 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecC--cCCEEEEEEcCCCHHHCEEEE
Confidence 47899998865542 3689998531 1111 113445444321 245678999999999999999
Q ss_pred EEE
Q psy17146 708 CSV 710 (1011)
Q Consensus 708 C~a 710 (1011)
|.+
T Consensus 79 C~v 81 (81)
T smart00406 79 CAV 81 (81)
T ss_pred EcC
Confidence 963
No 373
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.56 E-value=0.0089 Score=51.86 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=48.7
Q ss_pred CCcEEEEEEccCCCCC-cEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 148 DREIELECISANGKPP-AEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 148 g~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
++.+.|.|.+.+.+|. .+++|+||+.. ..+..........+..+...+.|.+..........|+|++.+..
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 5678999997777784 57999999887 44322222222223466667888887655445778999999864
No 374
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.53 E-value=0.01 Score=51.43 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=50.6
Q ss_pred cCCCcEEEEEEccCCC-C-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 146 TEDREIELECISANGK-P-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~-P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
..++.+.|.|.+.+.+ | ...++|.++++. .. ............+...+.|.|..-.......|+|.+.+...
T Consensus 17 ~~~~~atLtClV~~f~~P~~i~V~W~~~g~~--~~-~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 17 LLGSSASLTCTLSGLRDPEGAVFTWTPSGGK--EA-VQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred CcCCccEEEEEEeccCCCCCeEEEEEECCcc--Cc-EEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 3577899999977767 7 468999999876 22 11111222234677788999886666667779999998755
No 375
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.52 E-value=0.0052 Score=47.79 Aligned_cols=51 Identities=25% Similarity=0.492 Sum_probs=38.4
Q ss_pred cCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 403 DRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 403 ~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
..|.+|+|+|...+. .+.|.+++... .+....+.+.+-. ++.|.|+|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~-~g~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVS-QGSDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccC-CCCCceEEeeccC-CCCceEEEEeCC
Confidence 458999999997633 39999998333 3344566677777 999999999964
No 376
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.44 E-value=0.0069 Score=47.39 Aligned_cols=49 Identities=29% Similarity=0.402 Sum_probs=39.5
Q ss_pred CCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 405 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 405 G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
.+.|.|.|.+. .+|.|++ |..+.......|.+.....+-.|+|+|.+++
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEec-CcccccccccEEeccCcccCCCcceEecCcc
Confidence 45799999762 4699999 6555544578888999999999999999876
No 377
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.38 E-value=1.8 Score=46.24 Aligned_cols=158 Identities=19% Similarity=0.251 Sum_probs=91.3
Q ss_pred ceEEEcCCCcEEEEEEEec---CCCCeEEEEecCCce------------e--------------------ecCCCcEEEe
Q psy17146 552 YSVQVDRGAGVNLLCDVDG---NPAPEITWIHEDSDK------------V--------------------VGNSPNLTLL 596 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g---~p~p~v~W~k~~~~~------------~--------------------~~~~~~L~I~ 596 (1011)
..+.+..|..+.|.|..+. ..-...+|+--|-++ + ....++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 3566778999999999875 233478898654111 0 0123799999
Q ss_pred ecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecCCceeeecC-CcEEEEEEEEec-CCCCeEEEEECCeEecccC
Q psy17146 597 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPG-DTARVECSAFSI-PPPEKVTWSYRGEEIGVGS 674 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G-~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~ 674 (1011)
++..+.+|-|+|+|.. +........-|.|...-.+. ...+| ......|-+-.. -.|..+.|.-+|.......
T Consensus 352 ka~I~N~GCY~~~a~~-g~~~~ec~~Cl~V~d~V~f~-----W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~ 425 (500)
T PHA02914 352 KAHINNAGCYEAQAFM-GKFKEECRHCFKVADHVFFK-----WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEI 425 (500)
T ss_pred eEEEEcCCceEEEEec-CcchhhhhhheEeccEEEEE-----EEeccCceEEEEEEEEecccCCceeEEEEccEEecCee
Confidence 9999999999999986 33333333334443211111 11132 334677877655 5565799999887654211
Q ss_pred CCCeEEecCC-cCccceeEEEEcCCCCCC-CEEEEEEEEcCCC
Q psy17146 675 SDDYSVLEDP-LKEGIKSTLIIRESRHDH-FGVYNCSVSNPYG 715 (1011)
Q Consensus 675 ~~~~~~~~~~-~~~~~~~~L~I~~~~~~d-~G~Y~C~a~N~~G 715 (1011)
........+. ...-..+.+.|.+-...| --.-.|+..-..|
T Consensus 426 ~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~ 468 (500)
T PHA02914 426 ADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQG 468 (500)
T ss_pred cCcccccccccccccceEEEEEecccCccccccceEEEecCCC
Confidence 1111111111 112245678888765555 3356676654444
No 378
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.35 E-value=0.0095 Score=51.67 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=43.9
Q ss_pred eeecCCcEEEEEEEEec--CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 639 FGIPGDTARVECSAFSI--PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~--p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
....+..++|.|.+.|. |..+.|+|.++|.. .. .... ...+........+.|.|..-.......|+|.|.+...
T Consensus 15 ~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~-~~t~-~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 15 DLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EA-VQTS-AESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred HhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-Cc-EEcC-cccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 34467889999999984 55678999999875 21 1000 0011000011245666664333444479999987754
No 379
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.30 E-value=0.0048 Score=47.94 Aligned_cols=51 Identities=25% Similarity=0.492 Sum_probs=37.3
Q ss_pred cCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 557 DRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 557 ~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
..|.+|+|.|...+. .+.|.+++... .+.+..+.+.+-. +++|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~-~g~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVS-QGSDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccC-CCCCceEEeeccC-CCCceEEEEeCC
Confidence 358999999986533 39999998333 2344566666666 899999999975
No 380
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.17 E-value=0.0096 Score=53.86 Aligned_cols=73 Identities=18% Similarity=0.275 Sum_probs=44.5
Q ss_pred eEEecCcEEEEEEEcCC------CCeeEEeeCCeecCCcccC------CCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 38 TAVVGSRVTLPCRVIDK------TGVLQWTKDDFALGPHRNL------SGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 38 ~v~~G~~v~L~C~v~~~------~~~v~W~k~~~~l~~~~~~------~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
...-.++|.|+|.+..- .-.+.|.+++..+...... ....+..+ .+...|+++|.+...+.- .|.|
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~GnY 100 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGNY 100 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccce
Confidence 44578999999999861 2269999998766322111 11234455 555678889999996655 8999
Q ss_pred EEEEEeC
Q psy17146 106 QCQVSTG 112 (1011)
Q Consensus 106 ~C~~~~~ 112 (1011)
+|.+...
T Consensus 101 TCeVt~~ 107 (130)
T PF08204_consen 101 TCEVTEL 107 (130)
T ss_dssp EEEEEET
T ss_pred EEEEEec
Confidence 9999875
No 381
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=95.82 E-value=0.03 Score=63.07 Aligned_cols=42 Identities=19% Similarity=0.070 Sum_probs=0.0
Q ss_pred ccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCC
Q psy17146 434 GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 475 (1011)
Q Consensus 434 ~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~ 475 (1011)
...+.|.|.+++.+|+|.|+....+..+......+.|.|..+
T Consensus 86 ~~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~ 127 (439)
T PF02480_consen 86 FNKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGP 127 (439)
T ss_dssp ------------------------------------------
T ss_pred ecCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCC
Confidence 345679999999999999999998765555445566666543
No 382
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.73 E-value=0.069 Score=47.28 Aligned_cols=75 Identities=11% Similarity=0.193 Sum_probs=49.3
Q ss_pred CCceeeecCCcEEEEEEEEecCCCC--eEEEEECCe-Eecc------------cCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPE--KVTWSYRGE-EIGV------------GSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~--~v~W~~~g~-~l~~------------~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
+....+..|+.++|+|.++|..... .+.|+|.-. .+.. ....++.+..+. ....-.|+|.+++
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~--s~ntv~L~l~~L~ 82 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTL--GNEQVNFTLQNLR 82 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeC--CCCEEEEEEcCCC
Confidence 3445677889999999998765542 688998421 1110 122333333321 2345789999999
Q ss_pred CCCCEEEEEEEE
Q psy17146 700 HDHFGVYNCSVS 711 (1011)
Q Consensus 700 ~~d~G~Y~C~a~ 711 (1011)
.+|++.|.|..+
T Consensus 83 a~DTa~Y~Ca~e 94 (115)
T cd05721 83 ANQTDIYFCKIE 94 (115)
T ss_pred HHHCeEEEEEee
Confidence 999999999763
No 383
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=95.67 E-value=0.064 Score=46.51 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=42.1
Q ss_pred CcEEEEEEEE-ecCCCCeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCCeEE
Q psy17146 644 DTARVECSAF-SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719 (1011)
Q Consensus 644 ~~v~L~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~ 719 (1011)
....+.|.+. |.|.+ .|+|+++... .... ......++ ..+.|.+......|.-.|+|+|.|..-....
T Consensus 16 ~~~va~C~s~~gkP~a-~ItW~~~~~~-----~~~~--~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~ 87 (95)
T cd05719 16 PVTVATCVSANGKPPA-TISWETTLGG-----EAET--QSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQ 87 (95)
T ss_pred ccEEEEEECCCCcCCC-EEEEEeCCCC-----ccee--EeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence 4568999984 77888 9999997111 0001 11111122 2467777665555555999999998854433
Q ss_pred EE
Q psy17146 720 EI 721 (1011)
Q Consensus 720 ~~ 721 (1011)
.+
T Consensus 88 ~~ 89 (95)
T cd05719 88 RF 89 (95)
T ss_pred EE
Confidence 33
No 384
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.46 E-value=0.068 Score=45.79 Aligned_cols=65 Identities=12% Similarity=0.185 Sum_probs=47.9
Q ss_pred eeecCceEEEEEEcccCCCc--cEEEEEeCCcccCCccc-----------cceEEEEeeecccCCcEEEEEEEEEeeC
Q psy17146 247 RLVEGTDVRLYCKAEANPSH--MKYRWYINDQPVPAAAS-----------ATELYLTNITRHQHDSIVKCEVQVSVIG 311 (1011)
Q Consensus 247 ~v~~g~~v~L~C~~~~~~~~--~~i~W~~~~~~l~~~~~-----------~~~l~i~~~~~~~~~~~~~c~~~~~~~~ 311 (1011)
.+.+|+.+++.|.+.+..+. ..+.|++.+..+..... ...-.....+++|++..+.|.+.+.+.+
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~~ 88 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHIDE 88 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeecc
Confidence 45799999999999988664 78999987766554321 1122334446899999999999988764
No 385
>PHA02982 hypothetical protein; Provisional
Probab=95.46 E-value=0.9 Score=44.02 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=89.9
Q ss_pred CceeEEecCcEEEEEEEcCCC--CeeEEeeCCeecCC-----cccCCC--------CcceEEeecCCCceeEEEEeeccc
Q psy17146 35 QDQTAVVGSRVTLPCRVIDKT--GVLQWTKDDFALGP-----HRNLSG--------FDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~~--~~v~W~k~~~~l~~-----~~~~~~--------~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
-++...+|++|.|.|...... ....|++++.-... ...+.. .+.+.+..+ ....+|+|.++..
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~--g~~STLTIkk~~i 109 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVS--GNSSTFTMKKPDP 109 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEe--ccceeEEeccCCc
Confidence 467888999999999966533 26899986522111 011111 133444333 3456999999999
Q ss_pred CCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeece
Q psy17146 100 DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNV 179 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~ 179 (1011)
+..|-|+|++..+...+ ....--|.|+... +. .........-.+.|-+. +.-..-..|.-+|-.. .+.
T Consensus 110 ~N~GCYtc~~ks~~~k~---E~c~kCl~V~~~~----V~---~~W~e~nNeT~V~CyVg-S~~~dvp~W~V~GVvt-tGg 177 (251)
T PHA02982 110 QNLGCFTCEAKDAEGKE---ETCEKCLEIQKED----IL---YVVEEHNNETIITCFVG-SKHGDVPRFIVAGIVT-TGG 177 (251)
T ss_pred ccCCceEEEEecCCCch---heeheeeeEecce----EE---EEEEecCCeEEEEEEEE-eccCCCccEEEeeEEe-cCC
Confidence 99999999998854332 1223344442211 10 11112344567889743 2222222787654321 222
Q ss_pred eEEEe------eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 180 RVTEE------ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 180 ~~~~~------~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+...+ ....+ -.-..+.|.+.-.++--.=.|+.--..+.+
T Consensus 178 ~~sg~i~~gfn~~seg---y~y~~Ikin~s~~~~V~kp~CRy~~~~~ya 223 (251)
T PHA02982 178 PMSGEIPKGFNQDSEG---YRYNSIKINESVTDHIEKPYCRYWIDNDHA 223 (251)
T ss_pred ccccccccccccccCc---eEEEEEEEcccccccccccEEEEEcCCCce
Confidence 11100 01111 111356665554556666778776554443
No 386
>KOG0613|consensus
Probab=95.16 E-value=0.13 Score=63.31 Aligned_cols=166 Identities=7% Similarity=-0.081 Sum_probs=114.4
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee--cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEE
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVY 625 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~ 625 (1011)
...++.-....++...+.|.+.+...+.+.|+.+.-.... ....++.|.+-...+.+.|+|...+ ..+.....+...
T Consensus 233 ~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~-~~~q~~~~v~~~ 311 (1205)
T KOG0613|consen 233 GSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDGPEPELSWTVADKR-QGCQDRFKVTEE 311 (1205)
T ss_pred CCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCccccccccCCccccceeeeccc-CCcccceeeeEE
Confidence 3344455567788899999999999999988877533322 3445677778788888889999887 344444433333
Q ss_pred EcC----------------CCeee----cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc
Q psy17146 626 LKG----------------RPTII----SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 626 V~~----------------~P~i~----~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
+.. +|... ......+..+..+++.|...+.+.|..+.|++++.....+....+.. .
T Consensus 312 ~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~ 387 (1205)
T KOG0613|consen 312 APIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCP----V 387 (1205)
T ss_pred eeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccc----c
Confidence 211 12111 12344566788999999999999986699999887766433221111 1
Q ss_pred CccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 686 ~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
.......+.|..+...+.+.|.|.|.|..|...
T Consensus 388 ~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~ 420 (1205)
T KOG0613|consen 388 GTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQ 420 (1205)
T ss_pred ccccCcchhhhhcCcccccccccceeccCCccc
Confidence 234457899999999999999999999999543
No 387
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=95.08 E-value=0.11 Score=45.00 Aligned_cols=64 Identities=9% Similarity=0.155 Sum_probs=39.4
Q ss_pred CcEEEEEEEcC--CCCeeEEeeCCeecCCcc-cCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeCC
Q psy17146 43 SRVTLPCRVID--KTGVLQWTKDDFALGPHR-NLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGI 113 (1011)
Q Consensus 43 ~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~-~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 113 (1011)
..+.+.|...+ |.+.|.|+++........ .....+++.+ ...|.+..-..+|.-.|+|++.+..
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv-------~S~l~~~P~~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTV-------TSEYSLVPTPEANGKEVTCKVEHET 82 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEE-------EEEEEEecCHHHCCCEEEEEEeCcc
Confidence 56789999987 556999999832211111 0111112222 1257776667777789999999854
No 388
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=94.92 E-value=0.04 Score=49.95 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=49.7
Q ss_pred eecCCcEEEEEEEEecCC----CCeEEEEECCeEecccCCCCeEEec--------CCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 640 GIPGDTARVECSAFSIPP----PEKVTWSYRGEEIGVGSSDDYSVLE--------DPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~p~----p~~v~W~~~g~~l~~~~~~~~~~~~--------~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
..-+++|.|.|.+..... ...|.|.++|+.+-.-+........ ... -...++|.+...+.- .|+|+
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l-~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISEL-LKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGG-GGTB--EEEEHHHHH--EEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHh-hCCCEEEEEcchhcc-ccceE
Confidence 345789999999865222 1269999999887542222111100 001 123567888886555 89999
Q ss_pred EEEEcCCCCeEEEEEEEec
Q psy17146 708 CSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 708 C~a~N~~G~~~~~~~l~V~ 726 (1011)
|.|.+...+.+..+.|...
T Consensus 102 CeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 102 CEVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEEETTEEEEEEEEEEE-
T ss_pred EEEEecCCCceEEEEEEEE
Confidence 9999998888888888763
No 389
>PHA02633 hypothetical protein; Provisional
Probab=94.85 E-value=0.078 Score=40.50 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=34.5
Q ss_pred cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecc
Q psy17146 349 ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGP 391 (1011)
Q Consensus 349 ~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P 391 (1011)
.....|.|.++..+ |+|.|.|..+|..-....++.|.|....
T Consensus 15 ~~~~nLwilpa~~s-DSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 15 DNCNNMLILNPTQS-DSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cccccEEEeccccc-cCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 46678999999988 9999999999887777788888886543
No 390
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=94.70 E-value=12 Score=44.23 Aligned_cols=393 Identities=11% Similarity=0.123 Sum_probs=210.1
Q ss_pred cccccCCcEEEEEEeecCCCccEEEEEECC--e--ecCCCcCccEEEEeecccccCCcEEE--EEEEcCCccc----eee
Q psy17146 313 NRLVEGTDVRLYCKAEANPSHMKYRWYIND--Q--PVPAAASATELYLTNITRHQHDSIVK--CEVHNDVGKS----EDS 382 (1011)
Q Consensus 313 ~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g--~--~l~~~~~~~~L~I~~~~~~~d~G~Y~--C~a~n~~g~~----~~s 382 (1011)
..+..|+.+.+...+...+ +-++.+.++ . .+..=.....|.. +.. .+|.|. |.+.+..... .+.
T Consensus 107 ~~l~vGe~l~~~V~~~~e~--~LYKF~I~~~~~w~~iqDYst~n~lsy---t~~-~~G~Y~ll~~~Kd~~S~~~fDD~~~ 180 (667)
T PRK14081 107 DTLNVGEKIEIKVDSNKEP--LMYRYWIKEDNNWKLIKDYSTENSLSY---TAN-KPGKYELLVECKRIDSTKDFDDFKK 180 (667)
T ss_pred ccccCCCEEEEEEEeccCc--EEEEEEEcCCCcEEEEEecCCcceEEE---Eec-CCCcEEEEEEEecCCCccccCcceE
Confidence 3567888887776654433 344433322 1 1111122233333 222 678775 4555443322 233
Q ss_pred EEEEEEecceEeeC---CCceEecCCCcEEEEeec--CCCCCCceEEEe---CCCceeeccCCcEEEEeeccCCCeEEEE
Q psy17146 383 ETLDVTYGPRFRAR---PYSVQVDRGAGVNLLCDV--DGNPAPEITWIH---EDSDKVVGNSPNLTLLMTSDDLAGRYYC 454 (1011)
Q Consensus 383 ~~l~V~~~P~~~~~---p~~~~v~~G~~v~l~C~~--~g~p~p~v~W~k---~~~~~~~~~~~~L~I~~v~~~d~G~Y~C 454 (1011)
....|..-+.+.+. --+..+..|+.+.|...+ .+.-..-++..+ +|......+-.+-.+-.-.+..+|.|+.
T Consensus 181 v~y~Vk~~~~v~I~~F~~lns~~i~~~eI~f~~~a~~~~g~~~LYKF~~i~~~G~~~~~qdYst~n~~~y~~~~~G~Y~i 260 (667)
T PRK14081 181 VKFKVKEIDKVEITDFKCLNKELICDEELVFEVESVYEEDRTILYKFVKIDSDGKQTCIQDYSTKNIVSYKEKKSGDYKL 260 (667)
T ss_pred EEEEcccCcceEEEeccccCcceecCcEEEEEEEEEeCCCceEEEEEEEECCCCCEEEecCccccceEEEEeCCCccEEE
Confidence 44444443332221 111235558888888555 333333455554 4433333333344445556789999965
Q ss_pred EE--EEc---CCcceeeEEEEEEcC--CCeeec---cCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEee-------
Q psy17146 455 KA--SVM---GFPEVGAEATVYLKG--RPTIIS---HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG------- 517 (1011)
Q Consensus 455 ~a--~n~---~~~~~s~~~~v~v~~--~p~~~~---~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~------- 517 (1011)
.+ ... ..-...+.+...|.. ++.+.. ........|+.+.+...+.|+..- .+++.-.|..+.
T Consensus 261 ~~~VKD~~S~~eyDD~~~l~y~Vk~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~GG~~l-lYrf~I~G~~~e~~~Y~~~ 339 (667)
T PRK14081 261 LCLVKDMYSNNEFDDRAVLVYTVKPYKDIKIRNFTTDLSSPQLTDTDIELKAVAEGGKEL-LYRFIIKGKESEDSGYIRN 339 (667)
T ss_pred EEEEeccCcccccccceEEEEEEecCCCcEEEEEEEcCCCCeecCceEEEEEEecCCCce-EEEEEECCcEEeecccccc
Confidence 54 431 112233344444433 233322 233445789999999999987754 566555564442
Q ss_pred ------ccCCCceEEEc----CCCC----CcccEEEEEEec---ce-ee--cCCceEEEcCCCcEEEEEEEecCCCCeEE
Q psy17146 518 ------VGSSDDYSVHN----DVGK----SEDSETLDVTYG---PR-FR--ARPYSVQVDRGAGVNLLCDVDGNPAPEIT 577 (1011)
Q Consensus 518 ------~~~~~~y~~~n----~~G~----~~~~~~l~V~~~---P~-~~--~~p~~~~v~~G~~~~l~C~~~g~p~p~v~ 577 (1011)
....|.|.+.- .... ......+.+... |. +. ..+..-.+..|+.+.+.|.++|.-...+.
T Consensus 340 n~~~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~ 419 (667)
T PRK14081 340 NIYTWKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYS 419 (667)
T ss_pred ceEEEeeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEE
Confidence 33577887532 2221 123334444443 32 21 12233456779999999999887655443
Q ss_pred -EEecCCceeec----CCCcEEEeecCCCCCEEEEEEEE--ec---CCCceeeEEEEEEcC-CCe-ee---cCCceeeec
Q psy17146 578 -WIHEDSDKVVG----NSPNLTLLMTSDDLAGRYYCKAS--VM---GFPEVGAEATVYLKG-RPT-II---SHRTQFGIP 642 (1011)
Q Consensus 578 -W~k~~~~~~~~----~~~~L~I~~v~~~d~G~Y~C~a~--n~---~~~~~s~~~~l~V~~-~P~-i~---~~~~~~v~~ 642 (1011)
|.+.++..... .+..+.+ .+.-+|.|+..+. +. ..-.....+.+.|.+ .|. +. .+.......
T Consensus 420 f~ik~ng~~ve~~~Y~~~~~~~f---~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~v 496 (667)
T PRK14081 420 FIIKKDGKEEEKIDYGKNNWVNF---IPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLV 496 (667)
T ss_pred EEEEECCEEEEEeecccccEEEE---EECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEe
Confidence 66655444322 2344444 5688999988775 31 112346778888876 565 33 344556889
Q ss_pred CCcEEEEEEEEecCCC-CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEE--EcCCC----
Q psy17146 643 GDTARVECSAFSIPPP-EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSV--SNPYG---- 715 (1011)
Q Consensus 643 G~~v~L~C~~~g~p~p-~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a--~N~~G---- 715 (1011)
|+.+++.|.+++.-.. ..+.-+.||.-+... .|.. ...+++. +.-+|.|+..+ .|...
T Consensus 497 g~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t---~Ys~---------~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~ 561 (667)
T PRK14081 497 GDDIEIEVIIQNTKDVLIKYILKINGHKVEET---DYIK---------NKKYKFI---PKCSGKYTIEVLAKNIKSTEEY 561 (667)
T ss_pred CCEEEEEEEEeCCCeEEEEEEEEECCEEEEEe---eccc---------cceEEEe---ecCCceEEEEEEEccccccccc
Confidence 9999999999886433 123333466665321 1111 1233333 56789999764 46555
Q ss_pred CeEEEEEEEecCCCC
Q psy17146 716 SDSVEIMLKPQKSFP 730 (1011)
Q Consensus 716 ~~~~~~~l~V~~~~~ 730 (1011)
.+...+.+.|.+..|
T Consensus 562 D~~k~v~~~V~e~~p 576 (667)
T PRK14081 562 DSKKEVKFYVREALP 576 (667)
T ss_pred ccceEEEEEEcCCCC
Confidence 345677888865533
No 391
>PHA02982 hypothetical protein; Provisional
Probab=94.67 E-value=0.36 Score=46.67 Aligned_cols=124 Identities=14% Similarity=0.280 Sum_probs=70.4
Q ss_pred eecCCCcEEEEEEccCCCCCcEEEEEeCCceeeecee-----EEE--------eeecCCceEEEEEEEEEeeccCcCCcE
Q psy17146 144 YTTEDREIELECISANGKPPAEITWIDGTGTVMSNVR-----VTE--------EASVDGRRTTVKSTLVLTPKKEHHNTT 210 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~-----~~~--------~~~~~~~~~~~~~~L~I~~~~~~d~G~ 210 (1011)
....|+++.|.|....+.--....|+++++....... ... ............++|+|+++..+..|.
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence 3456999999998545555567889987655444111 100 000000111234799999999999999
Q ss_pred EEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecC-ceEEEEEEcccCCCccEEEEEeCCc
Q psy17146 211 FTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEG-TDVRLYCKAEANPSHMKYRWYINDQ 276 (1011)
Q Consensus 211 Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g-~~v~L~C~~~~~~~~~~i~W~~~~~ 276 (1011)
|+|++....+... ...--+.|+.. .+.. .+.++ ..-.+.|-+.+...... .|..+|.
T Consensus 115 Ytc~~ks~~~k~E-~c~kCl~V~~~-~V~~------~W~e~nNeT~V~CyVgS~~~dvp-~W~V~GV 172 (251)
T PHA02982 115 FTCEAKDAEGKEE-TCEKCLEIQKE-DILY------VVEEHNNETIITCFVGSKHGDVP-RFIVAGI 172 (251)
T ss_pred eEEEEecCCCchh-eeheeeeEecc-eEEE------EEEecCCeEEEEEEEEeccCCCc-cEEEeeE
Confidence 9999998665442 21222222110 1111 11223 34566898887765422 8877664
No 392
>PHA03283 envelope glycoprotein E; Provisional
Probab=94.61 E-value=2.7 Score=47.01 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=31.2
Q ss_pred cCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCC
Q psy17146 435 NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 476 (1011)
Q Consensus 435 ~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p 476 (1011)
+.+.|.|.+++..++|.|+....|.++ .....+.|.|+.++
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~ 172 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPP 172 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCC
Confidence 457799999999999999999997554 44445566676543
No 393
>KOG0196|consensus
Probab=94.40 E-value=0.11 Score=60.42 Aligned_cols=107 Identities=7% Similarity=0.052 Sum_probs=77.2
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCC------eEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCC
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGS------DSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPP 763 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~------~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 763 (1011)
...++|.++.+...++|...|.|.... ..+.+.++.. +..+++
T Consensus 397 ~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~-------------------------------qa~ps~ 445 (996)
T KOG0196|consen 397 ETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTN-------------------------------QAAPSP 445 (996)
T ss_pred cceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeecc-------------------------------ccCCCc
Confidence 468899999999999999999998763 2333444332 223345
Q ss_pred CCCCccccccccccccccc-CCCCCCCCcCcceeeecCcc--------------------cccccccc---c---CCCCC
Q psy17146 764 PGNGIEHHVTADGEKNQCK-ESDNSSNISDIKLEFRTGSS--------------------VSNVHLDY---A---GHDSE 816 (1011)
Q Consensus 764 p~~~~~~~~~~~s~~~~W~-~~d~~s~I~~Y~ve~~~~~~--------------------~p~~~Y~f---A---~G~g~ 816 (1011)
-..++....+.+++.|+|. +...+..|..|.|.|.++.. .|.+.|.| | .|.|.
T Consensus 446 V~~~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~ 525 (996)
T KOG0196|consen 446 VSVLRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDEDERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGP 525 (996)
T ss_pred cceEEEeeeccCceEEecCCCCCCCCcceeEEEEEeeccccccceeEEecccceEEeeccCCCcEEEEEEEEecccCCCC
Confidence 5567888899999999993 33345579999999988742 89999999 4 88888
Q ss_pred CC-ccccccccc
Q psy17146 817 TG-SESVHTRIG 827 (1011)
Q Consensus 817 ~s-s~~~~t~~~ 827 (1011)
.| ...+.|.+.
T Consensus 526 ~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 526 YSGKHEFQTLPS 537 (996)
T ss_pred CCCceeeeecCc
Confidence 88 333455543
No 394
>PHA02633 hypothetical protein; Provisional
Probab=94.14 E-value=0.1 Score=39.87 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=33.7
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
...|-|.++..+|+|.|.|+.+|.---...++.|+|..
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 36799999999999999999999988888899998854
No 395
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=93.85 E-value=0.46 Score=41.06 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=46.5
Q ss_pred ceeEEecCcEEE-EEEEcC--CCCeeEEeeCCeecCCcc-cCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEe
Q psy17146 36 DQTAVVGSRVTL-PCRVID--KTGVLQWTKDDFALGPHR-NLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 36 ~~~v~~G~~v~L-~C~v~~--~~~~v~W~k~~~~l~~~~-~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 111 (1011)
.+.+.+|+.+.+ .|...+ |.+.|.|+.+........ .....+.+.+. .+|.+..-+.+|.-.++|++.+
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~-------S~~~l~p~r~d~G~~vtC~V~H 82 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVT-------SEYIWVPSRHANGHPLTCVVSH 82 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEE-------EEEEEEeCHHHCCcEEEEEEeC
Confidence 466779999999 999987 556999998754332111 11111233322 2577767777778899999988
Q ss_pred CC
Q psy17146 112 GI 113 (1011)
Q Consensus 112 ~~ 113 (1011)
..
T Consensus 83 ~a 84 (97)
T cd07704 83 PA 84 (97)
T ss_pred cc
Confidence 53
No 396
>KOG1026|consensus
Probab=93.57 E-value=0.18 Score=59.49 Aligned_cols=152 Identities=16% Similarity=0.275 Sum_probs=90.9
Q ss_pred eEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCC-cE--EEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCC
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSP-NL--TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 629 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~-~L--~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 629 (1011)
...+..|..+++.|.+.+.|.|.+.|+............ .+ ....+-.. +.|.++| ..+.....+.+.+..+
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~----~~c~~E~-~~~~~~~~v~~~~~~p 275 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN----DLCIAEN-AVARSNPSILLVVDLP 275 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec----hhhHHHH-hhhhcCceeeeEEecc
Confidence 455778999999999999999999999886443322211 11 11111111 8999998 5666666777777666
Q ss_pred CeeecCCceeeecCCcEEEEEEEE---ecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 630 PTIISHRTQFGIPGDTARVECSAF---SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 630 P~i~~~~~~~v~~G~~v~L~C~~~---g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
+....+....-. .=.|... +.|.+ ...|..++..+.........+... ..-+........+.|.|
T Consensus 276 ~~~~~~~~~~~~-----~~~C~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~t~s~~------~~C~~~~~~~h~~~~~~ 343 (774)
T KOG1026|consen 276 KAEVLLCSPLSD-----HHNCIPIGITANPGP-ALHWCYNGSGLNYRGTVCVTKSGK------EQCLPWNDPPHSHNGNY 343 (774)
T ss_pred cccccCCCCccc-----cCceeeeeccCCCCC-ceeeeecCccceEecccccccccC------cCCcccCcCcccccCcc
Confidence 554422111000 2233333 55566 789999988766433222222221 02223333366789999
Q ss_pred EEEEEcCCCCeEEEE
Q psy17146 707 NCSVSNPYGSDSVEI 721 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~ 721 (1011)
+|.+.|..|......
T Consensus 344 ~~~~e~~~g~~~~r~ 358 (774)
T KOG1026|consen 344 TLFPELPGGKNYCRN 358 (774)
T ss_pred eeeecccCccccccC
Confidence 999999988654443
No 397
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=93.28 E-value=4.4 Score=40.30 Aligned_cols=105 Identities=24% Similarity=0.359 Sum_probs=66.9
Q ss_pred cEEEEEeCCceeeece-eEEEeeecCCceEEEEEEEEE-eeccCcCCcEEEEEEEeCCCCc---eeEEEEEEEEEeCCce
Q psy17146 164 AEITWIDGTGTVMSNV-RVTEEASVDGRRTTVKSTLVL-TPKKEHHNTTFTCQAQNTADRT---YKVARLKLLVKYAPKV 238 (1011)
Q Consensus 164 ~~i~W~k~~~~l~~~~-~~~~~~~~~~~~~~~~~~L~I-~~~~~~d~G~Y~C~a~n~~g~~---~~s~~v~v~v~~~P~~ 238 (1011)
..++||.|+..+..+. +.......++ .+...++|.+ .+...+..-..+|.+.-..... ..++.+.-.|...|.+
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G-~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~v 85 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDG-LFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRV 85 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCC-cEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEE
Confidence 3689999999776532 2222233334 5666788988 4555566778999998654433 2244445566777777
Q ss_pred EEEecCcceeecCceEEEEEEcccCCC-ccEEEEEeCCccc
Q psy17146 239 QVSVIGSNRLVEGTDVRLYCKAEANPS-HMKYRWYINDQPV 278 (1011)
Q Consensus 239 ~~~~~~~~~v~~g~~v~L~C~~~~~~~-~~~i~W~~~~~~l 278 (1011)
.+...+ | ...|.+.--+. ...+.|..++.+.
T Consensus 86 sv~F~~------g---~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 86 SVRFED------G---YAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred EEEecC------C---EEEEEcceeeCCCeEEEEEECCccC
Confidence 665532 2 34577776663 3899999988764
No 398
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=93.21 E-value=0.59 Score=39.38 Aligned_cols=66 Identities=30% Similarity=0.503 Sum_probs=46.4
Q ss_pred EEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 151 IELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 151 v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+.=.|.++.|+|++.|+|.-+- .+.................+.+.+-+....|.-..+|.+.+...
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l----~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~ 88 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRL----KGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRND 88 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccC----CCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccc
Confidence 4668998999999999998531 11111112222223566678888889999999999999998633
No 399
>KOG4258|consensus
Probab=93.14 E-value=0.1 Score=60.87 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=46.5
Q ss_pred cccccccc---c-----CCCCCCC-cc--cccccccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEe
Q psy17146 803 VSNVHLDY---A-----GHDSETG-SE--SVHTRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDF 871 (1011)
Q Consensus 803 ~p~~~Y~f---A-----~G~g~~s-s~--~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~ 871 (1011)
.||+.|.+ + +++.-.. |. -++|..+.|+. |..+-... . +.+...++|+| +...||.+..|.|.
T Consensus 574 kP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Psp-Pl~~ls~s--n-sSsqi~l~W~p--P~~pNG~lt~Ylv~ 647 (1025)
T KOG4258|consen 574 KPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSP-PLDVLSKS--N-SSSQILLKWKP--PSQPNGNLTHYLVV 647 (1025)
T ss_pred CccceeEEEEeeeehhhhccccccccceEEEEecCCCCCC-cchhhhcc--C-cchheeEEecC--CCCCCCceeEEEEE
Confidence 89999998 2 2332212 33 38899998865 44433333 0 11122339999 56789999999999
Q ss_pred eeccCCCC
Q psy17146 872 IRDYNQTL 879 (1011)
Q Consensus 872 ~r~~~~~~ 879 (1011)
|+.+....
T Consensus 648 wer~~~~~ 655 (1025)
T KOG4258|consen 648 WERQAEDG 655 (1025)
T ss_pred EEeccCCc
Confidence 99887764
No 400
>PHA03042 CD47-like protein; Provisional
Probab=92.23 E-value=0.53 Score=47.80 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=49.4
Q ss_pred cCCcEEEEEEEEec----CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 642 PGDTARVECSAFSI----PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~----p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
=++++.+.|.+..- -....+.|.+||+.+-..++. ..++|.+...+ .-.|+|+|+|.+..-+.
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------------n~aSL~~~f~~-~l~GNYTCEv~~l~n~g 96 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------------NTSSLKFNFSK-NLSGNYTCEAINKFNKI 96 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------------cceEEEEeccc-cCCCceeEEEeecccCc
Confidence 46889999998642 122379999999988642221 12677776654 34899999999877666
Q ss_pred EEEEEEEec
Q psy17146 718 SVEIMLKPQ 726 (1011)
Q Consensus 718 ~~~~~l~V~ 726 (1011)
...+.|.-.
T Consensus 97 k~~IeLk~~ 105 (286)
T PHA03042 97 KNTIELQYV 105 (286)
T ss_pred cEEEEEEEE
Confidence 666666543
No 401
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=92.12 E-value=0.48 Score=47.99 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=39.2
Q ss_pred CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeCC
Q psy17146 54 KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGI 113 (1011)
Q Consensus 54 ~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 113 (1011)
-+|.+.|..++. ..+++..++.++..+ +|.+.+...+++|.|+|..+...
T Consensus 11 iDP~y~W~GP~g-----~~l~gn~~~nIT~TG-----~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNG-----KPLSGNSYVNITETG-----KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCC-----cccCCCCeEEEccCc-----eEEeeccccccCCceEEEEEEEe
Confidence 467899998863 334556677776544 79999999999999999998753
No 402
>KOG4597|consensus
Probab=92.11 E-value=0.16 Score=55.18 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=63.9
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEE---CCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEE
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSY---RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVS 711 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~---~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~ 711 (1011)
+....+..|++..++|.+.|.+.+ .|+|.+ |+..+.... .. ...+.. -.....|.|-+....|+|.|+|.|.
T Consensus 203 pa~w~vg~wetcS~tCg~~G~q~r-~V~c~qv~anr~~vv~~~--nq-~~e~p~-vtstcql~ic~ewq~~a~w~tCs~r 277 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQGRQYR-VVTCEQVFANRENVVMRP--NQ-TVENPV-VTSTCQLVICNEWQADAGWYTCSAR 277 (560)
T ss_pred cchhhcccchhhcccccccCCcCc-eeeeehhhccccceeecC--cc-ccCCcc-eeeeeeEEEcchhhcCCCceeeccc
Confidence 345567889999999999999999 999976 443333211 11 111110 1125789999999999999999999
Q ss_pred cCCCCeEEEEEEEec
Q psy17146 712 NPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 712 N~~G~~~~~~~l~V~ 726 (1011)
|..|-..+.+.+.+.
T Consensus 278 cg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 278 CGAGFLRRDVPCSSV 292 (560)
T ss_pred cccceeeccceeeee
Confidence 999998888888764
No 403
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=91.74 E-value=34 Score=40.64 Aligned_cols=254 Identities=11% Similarity=0.087 Sum_probs=155.5
Q ss_pred ecCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEEc-----CCcceeeEEEEEEcCC-
Q psy17146 402 VDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVM-----GFPEVGAEATVYLKGR- 475 (1011)
Q Consensus 402 v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~-----~~~~~s~~~~v~v~~~- 475 (1011)
...|+.+.|...+.|.-...++..-.|.......-..-.--+..++.+|.|...+.-. +.-.....+...+...
T Consensus 302 ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~~Y~~~n~~~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~ 381 (667)
T PRK14081 302 QLTDTDIELKAVAEGGKELLYRFIIKGKESEDSGYIRNNIYTWKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKS 381 (667)
T ss_pred eecCceEEEEEEecCCCceEEEEEECCcEEeeccccccceEEEeeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccC
Confidence 4679999999999876666666555554433222222333445677899999888741 1122344555555543
Q ss_pred --Cee----eccCcccccCCCeEEEEeEeeeCCCCC-eeEEeeCCeEee-------------ccCCCceEE----EcCCC
Q psy17146 476 --PTI----ISHRTQFGIPGDTARVECSAFSIPPPE-KVTWSYRGEEIG-------------VGSSDDYSV----HNDVG 531 (1011)
Q Consensus 476 --p~~----~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~i~-------------~~~~~~y~~----~n~~G 531 (1011)
|.. ..........|+.+.+.+.+.++.... .+.-.++|..+. ....|.|++ .|...
T Consensus 382 ~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S 461 (667)
T PRK14081 382 KEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYS 461 (667)
T ss_pred CCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeecccccEEEEEECCCeeEEEEEEEecccC
Confidence 432 223445677899999999999986432 222344776653 335788874 34433
Q ss_pred CC----cccEEEEEEe-cce-ee--cCCceEEEcCCCcEEEEEEEecCCCCeEE-EEecCCceee----cCCCcEEEeec
Q psy17146 532 KS----EDSETLDVTY-GPR-FR--ARPYSVQVDRGAGVNLLCDVDGNPAPEIT-WIHEDSDKVV----GNSPNLTLLMT 598 (1011)
Q Consensus 532 ~~----~~~~~l~V~~-~P~-~~--~~p~~~~v~~G~~~~l~C~~~g~p~p~v~-W~k~~~~~~~----~~~~~L~I~~v 598 (1011)
.. ...+.+.|.. .|. +. ..+.......|+.+++.|..++.....+. +.+.+++... .....+++.
T Consensus 462 ~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t~Ys~~~~ysf~-- 539 (667)
T PRK14081 462 DKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEETDYIKNKKYKFI-- 539 (667)
T ss_pred chhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEeeccccceEEEe--
Confidence 32 4456677764 443 22 33545568899999999999887655444 3344444332 233455554
Q ss_pred CCCCCEEEEEEEE--ec---CCCceeeEEEEEEcCCCeee-c---CCceeeecCCcEEEEEEEEecCCC
Q psy17146 599 SDDLAGRYYCKAS--VM---GFPEVGAEATVYLKGRPTII-S---HRTQFGIPGDTARVECSAFSIPPP 658 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~--n~---~~~~~s~~~~l~V~~~P~i~-~---~~~~~v~~G~~v~L~C~~~g~p~p 658 (1011)
+--+|.|+..+- |. ..-..-+.+.+.|.++..|+ . ........|+.++++....|.-.-
T Consensus 540 -P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~~~~~~~~~~n~~~t~~~~~~gg~~v 607 (667)
T PRK14081 540 -PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKIKTSKKKFKCNEEVTFSVKSEGGKDV 607 (667)
T ss_pred -ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEEEeecceEEcCCeEEEEEEccCCCcE
Confidence 667899998875 31 11234567888898874443 1 244567889999999888776554
No 404
>PHA03282 envelope glycoprotein E; Provisional
Probab=91.69 E-value=5.8 Score=43.66 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=26.5
Q ss_pred CCcEEEeecCCCCCEEEEEEEEecCCC-ceeeEEEEEE
Q psy17146 590 SPNLTLLMTSDDLAGRYYCKASVMGFP-EVGAEATVYL 626 (1011)
Q Consensus 590 ~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~~s~~~~l~V 626 (1011)
+++|.|.+++++|+|.|+-.+...... .....+.|.|
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V 160 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVV 160 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEe
Confidence 567999999999999999998642222 2344455666
No 405
>KOG3632|consensus
Probab=91.66 E-value=1.1 Score=53.34 Aligned_cols=169 Identities=14% Similarity=0.053 Sum_probs=93.3
Q ss_pred CCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCc-----------ccccccccc---c----CCCCCC------
Q psy17146 763 PPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGS-----------SVSNVHLDY---A----GHDSET------ 817 (1011)
Q Consensus 763 ~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~-----------~~p~~~Y~f---A----~G~g~~------ 817 (1011)
.|.++.+.+++..++.++| +.+.+..-+....-+--... -.|.+.|.- | .+.=+.
T Consensus 674 vpsqlrv~n~tqtSa~itwvp~nsn~~Hviyln~eE~~ps~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~e 753 (1335)
T KOG3632|consen 674 VPSQLRVWNATQTSAMITWVPFNSNFLHVIYLNAEEPRPSVAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPME 753 (1335)
T ss_pred cchhhhhhhhhchhhheeeeecCCCcceeeecCCccCCCchhhhhHHHHhccCCCCccceecccccCcCCCcccccchhh
Confidence 7889999999999999999 66555433221111100000 066777766 2 221111
Q ss_pred --C-cccccccccccccccccCCcccccccccCcCCCCCCCCCC---CCCCC-ccEEEEEeeeccCCCCCCCCCC-CC--
Q psy17146 818 --G-SESVHTRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKP---DGHNN-NGFVFSDFIRDYNQTLPKLAPS-PH-- 887 (1011)
Q Consensus 818 --s-s~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~---~~~ng-~~~gY~v~~r~~~~~~~~~~~~-~~-- 887 (1011)
. ...++|..+-|.+||.+|....+. +.....++|.||-- ...|| ..+||-||..-..--+...-++ ++
T Consensus 754 tr~atv~f~tLpAGppappldV~vE~g~--spg~l~vswrPptldsag~sngv~vtgYavyadgqkv~Evafptagst~V 831 (1335)
T KOG3632|consen 754 TRQATVLFRTLPAGPPAPPLDVKVETGG--SPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYADGQKVEEVAFPTAGSTKV 831 (1335)
T ss_pred hhccceeeecccCCCCCCchheeeecCC--CCceeeeeccCceeccccccCceeeeeeeeeeCCceeeeeecccCCceEE
Confidence 1 446889999999999998876522 34455669999863 33445 6778999987332222111111 10
Q ss_pred -CCCCCCCcccccCCCCCCCc-ccc--ccCCCCCccccccCCCcccCCC-CCCCCCCC
Q psy17146 888 -LPPSLSNSVIVTDKTPPPSH-LTI--SSNSVDPRYSATYGNPYLRQSP-NLPPPHTG 940 (1011)
Q Consensus 888 -~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 940 (1011)
+.+-.. ++. .-.-+ .++ ..+++|..=++|=| |=+|+-. +-|+|++|
T Consensus 832 elsQlq~-~l~-----~~~V~vRtms~~gesvdsipA~ip~-p~r~~~p~php~PPlA 882 (1335)
T KOG3632|consen 832 ELSQLQD-GLY-----HGAVGVRTMSVPGESVDSIPADIPG-PKRRTCPNPHPPPPLA 882 (1335)
T ss_pred Eeeeehh-hhe-----ecceeEEecccCccccccccccCCc-hhhccCCCCCCCCCCC
Confidence 000000 000 00000 122 44578888888887 6666655 55555555
No 406
>PHA03282 envelope glycoprotein E; Provisional
Probab=90.40 E-value=15 Score=40.70 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=34.7
Q ss_pred CCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEEcCCcc-eeeEEEEEEcC
Q psy17146 418 PAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPE-VGAEATVYLKG 474 (1011)
Q Consensus 418 p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~-~s~~~~v~v~~ 474 (1011)
|.|+..| .+++...+.+|.|.++..+|+|.|+..+....... ..+.+.+.|..
T Consensus 109 ~~~e~~~----~~rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p 162 (540)
T PHA03282 109 PGPEFAW----PPRVAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGP 162 (540)
T ss_pred CCccccc----CcceeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEecC
Confidence 3456777 23444446679999999999999999987543332 33345555544
No 407
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=89.37 E-value=8.9 Score=32.69 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=54.6
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCCCC-eeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTG-VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~~~-~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
..+.+.|+...|..|+++.++|...-+.+ .+.|.-.- .|..+.. ..+=..+.+.||+. | ..-.
T Consensus 4 f~v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L------------~k~~~~~--g~~W~~f~LsnV~~-d-s~~~ 67 (91)
T PF03921_consen 4 FEVRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSL------------SKTELDS--GPQWKAFQLSNVTE-D-SSPL 67 (91)
T ss_dssp S-EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSS------------EEEEEEE--ETTEEEEEEEEE-S-C-EEEE
T ss_pred eEEEEECCccEECCCCCEEEEEcCCCCCCCcceEEEec------------CCcccCC--CCcEEEEEEEcccc-C-CeEE
Confidence 35788999999999999999999987665 44554221 1111111 11223577889986 4 5778
Q ss_pred EEEEeCCCCCcceeeeEEEEEEEcCCC
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVLVPPD 133 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~~~p~ 133 (1011)
|.+.-.. ...++.+.|+|+.+|+
T Consensus 68 C~~~C~g----~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 68 CFFNCSG----EQSSASANITVYKPPE 90 (91)
T ss_dssp EEEEETT----EEEEEEEEEEEEB--S
T ss_pred EEEEcCC----eEEEeEEeeEEeCCCC
Confidence 9998642 2457789999998764
No 408
>KOG4597|consensus
Probab=88.77 E-value=0.4 Score=52.22 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=63.1
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEec---CCcee-----------ecCCCcEEEeecCCCCCEEEEEEE
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE---DSDKV-----------VGNSPNLTLLMTSDDLAGRYYCKA 610 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~---~~~~~-----------~~~~~~L~I~~v~~~d~G~Y~C~a 610 (1011)
+.+..-|....+-.+++..+.|.+.|.+.+.|+|.+. ....+ ..+...|.|-+....|+|.|+|.|
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~ 276 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA 276 (560)
T ss_pred cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence 3444555667788999999999999999999999864 22222 233478999999999999999999
Q ss_pred EecCCCceeeEEEEEE
Q psy17146 611 SVMGFPEVGAEATVYL 626 (1011)
Q Consensus 611 ~n~~~~~~s~~~~l~V 626 (1011)
.| +.|...+.+.+.+
T Consensus 277 rc-g~g~~~rdv~c~s 291 (560)
T KOG4597|consen 277 RC-GAGFLRRDVPCSS 291 (560)
T ss_pred cc-ccceeeccceeee
Confidence 99 6777777776655
No 409
>PHA03042 CD47-like protein; Provisional
Probab=88.09 E-value=2 Score=43.83 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=40.2
Q ss_pred CCCcEEEEEEEecC-----CCCeEEEEecCCceeecCC---CcEEEeecCCCCCEEEEEEEEe
Q psy17146 558 RGAGVNLLCDVDGN-----PAPEITWIHEDSDKVVGNS---PNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 558 ~G~~~~l~C~~~g~-----p~p~v~W~k~~~~~~~~~~---~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
=.+++.+.|.+..- ..-.++|..++..+...++ .+|++.. ...-.|.|+|+|.+
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f-~~~l~GNYTCEv~~ 91 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNF-SKNLSGNYTCEAIN 91 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEec-cccCCCceeEEEee
Confidence 46889999998653 3457999999988765443 3566654 55568999999997
No 410
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=87.58 E-value=4.5 Score=35.12 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=26.8
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEEE
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLK 724 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~ 724 (1011)
.-.|.|+.++..|+|.|.-+++|..|.. ...+.|.
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs 105 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS 105 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence 3689999999999999999999999976 3344443
No 411
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=87.39 E-value=1.6 Score=46.76 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.7
Q ss_pred cEEEEEEEEec-CCCCeEEEEEC
Q psy17146 645 TARVECSAFSI-PPPEKVTWSYR 666 (1011)
Q Consensus 645 ~v~L~C~~~g~-p~p~~v~W~~~ 666 (1011)
.++|+|.|.|+ |..+.+.|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999998 77778999999
No 412
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=86.34 E-value=1.4 Score=44.81 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=37.7
Q ss_pred CCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 162 PPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 162 P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
..|.+.|..+++.++.+.... .....+.|.+.+...+++|.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~--------nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYV--------NITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeE--------EEccCceEEeeccccccCCceEEEEEEEe
Confidence 467899999888776654322 12223579999999999999999998654
No 413
>PHA03286 envelope glycoprotein E; Provisional
Probab=85.23 E-value=31 Score=38.11 Aligned_cols=80 Identities=19% Similarity=0.105 Sum_probs=51.5
Q ss_pred cCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCC----C-eee--c-------------cCcccccCCCeEEE
Q psy17146 435 NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR----P-TII--S-------------HRTQFGIPGDTARV 494 (1011)
Q Consensus 435 ~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~----p-~~~--~-------------~~~~~~~~g~~~~l 494 (1011)
....|.|.+++..++|.|+-...|..+......+-|.|.++ + ... . ........||++.+
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~v 204 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDA 204 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEE
Confidence 45679999999999999999999765555556666777421 2 111 0 11224567998877
Q ss_pred EeEeeeC----CCCCeeEEeeCCe
Q psy17146 495 ECSAFSI----PPPEKVTWSYRGE 514 (1011)
Q Consensus 495 ~C~~~~~----~~~~~v~W~~~~~ 514 (1011)
.-..... +-...+.|+....
T Consensus 205 Sv~l~~~~~d~~Fsl~i~W~y~p~ 228 (492)
T PHA03286 205 SVTAHLTNWAGAFSLEFRVLFLPY 228 (492)
T ss_pred EEEEeecccCCCceEEEEEEEecC
Confidence 7665522 2333788876443
No 414
>PHA03281 envelope glycoprotein E; Provisional
Probab=84.94 E-value=32 Score=38.88 Aligned_cols=76 Identities=20% Similarity=0.148 Sum_probs=48.3
Q ss_pred CCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC-------eeecC-----------CceeeecCCcEEEEEE
Q psy17146 590 SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP-------TIISH-----------RTQFGIPGDTARVECS 651 (1011)
Q Consensus 590 ~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P-------~i~~~-----------~~~~v~~G~~v~L~C~ 651 (1011)
.+.|+|.+++..++|.|+-......+.+.-..+-|.|+..+ .+.+. ......+|+++.+...
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 46899999999999999988774212223335556665522 22211 1223457999888877
Q ss_pred EEec----CCCCeEEEEE
Q psy17146 652 AFSI----PPPEKVTWSY 665 (1011)
Q Consensus 652 ~~g~----p~p~~v~W~~ 665 (1011)
.... |....|.|++
T Consensus 377 L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EeeeccCCCceeEEEEEE
Confidence 6543 3334799986
No 415
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=84.72 E-value=11 Score=32.94 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=44.0
Q ss_pred cEEEEeecCCCCCCc--eEEEeCCCc----------eeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEE
Q psy17146 407 GVNLLCDVDGNPAPE--ITWIHEDSD----------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 472 (1011)
Q Consensus 407 ~v~l~C~~~g~p~p~--v~W~k~~~~----------~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v 472 (1011)
.+...-...+.+... ++|..+... .....+-.|.|+.++..|+|.|..++.+..+....+.+.|.|
T Consensus 29 sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 29 SVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred EEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 466666665555554 455433211 113346679999999999999999999987777777777766
No 416
>PHA03283 envelope glycoprotein E; Provisional
Probab=84.30 E-value=21 Score=40.24 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=51.7
Q ss_pred cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecce---------EeeCC------------CceEecCCCc
Q psy17146 349 ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPR---------FRARP------------YSVQVDRGAG 407 (1011)
Q Consensus 349 ~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~---------~~~~p------------~~~~v~~G~~ 407 (1011)
...+.|.|.+++.+ ++|.|+-...+..+.....+.|.|..++. ....| .......|++
T Consensus 131 ~~~~~l~I~~at~~-~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDt 209 (542)
T PHA03283 131 PERSVLQIQRATPN-IAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDS 209 (542)
T ss_pred CCCCeeEEEecccc-cCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCc
Confidence 35688999999998 99999999998766444556667765211 11111 1234567999
Q ss_pred EEEEeecCCCC-----CCceEEEeCC
Q psy17146 408 VNLLCDVDGNP-----APEITWIHED 428 (1011)
Q Consensus 408 v~l~C~~~g~p-----~p~v~W~k~~ 428 (1011)
+.+........ ..++.|++-.
T Consensus 210 f~lsi~l~s~~~d~~fs~~i~Wyy~p 235 (542)
T PHA03283 210 FDLSVHLESDIGDPSFSATIDWYYMN 235 (542)
T ss_pred eeEeEEEeeccCCCCceEEEEEEEec
Confidence 88877763222 2479998743
No 417
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=82.80 E-value=8.2 Score=32.90 Aligned_cols=67 Identities=16% Similarity=0.367 Sum_probs=45.1
Q ss_pred CCceeeecCCcEEEEEEEEec-----CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEE
Q psy17146 635 HRTQFGIPGDTARVECSAFSI-----PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~-----p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 709 (1011)
++...+..|.+++..|...-. ... .|.|..|+..+. ..+|....+ ..+++++.+......-.|.|.
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~-~I~Wkln~~~iP---~~qy~~in~-----~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNAS-QIVWKLNGEKIP---GSQYRVIND-----TVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STT-CEEEECSSCEST---CGCEEEEST-----TEEEEEESS--SSEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccc-eEEEEECCEECC---hhHcceeCC-----eEEEEEEccCCCCCceEEEEE
Confidence 445568899999999998733 233 799999999664 456665543 248889998887776677776
Q ss_pred E
Q psy17146 710 V 710 (1011)
Q Consensus 710 a 710 (1011)
.
T Consensus 81 l 81 (89)
T PF06328_consen 81 L 81 (89)
T ss_dssp E
T ss_pred E
Confidence 4
No 418
>PHA03286 envelope glycoprotein E; Provisional
Probab=81.95 E-value=30 Score=38.29 Aligned_cols=78 Identities=15% Similarity=0.104 Sum_probs=51.5
Q ss_pred cCccEEEEeecccccCCcEEEEEEEcCCccce-eeEEEEEEe-----cceEe--e------------CCCceEecCCCcE
Q psy17146 349 ASATELYLTNITRHQHDSIVKCEVHNDVGKSE-DSETLDVTY-----GPRFR--A------------RPYSVQVDRGAGV 408 (1011)
Q Consensus 349 ~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~-~s~~l~V~~-----~P~~~--~------------~p~~~~v~~G~~v 408 (1011)
.....|.|.+++.+ ++|.|+-...|..|... ..+.|.|.. +|... . .........|+++
T Consensus 124 ~~~~~L~I~nAt~q-naGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF 202 (492)
T PHA03286 124 GRGKELTILNASSQ-NAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTV 202 (492)
T ss_pred CCCCceEEeecccc-ccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeE
Confidence 45678999999998 99999999998877654 445566642 12111 1 2233446679998
Q ss_pred EEEeecC-----CCCCCceEEEeC
Q psy17146 409 NLLCDVD-----GNPAPEITWIHE 427 (1011)
Q Consensus 409 ~l~C~~~-----g~p~p~v~W~k~ 427 (1011)
.+..... +.-..++.|++-
T Consensus 203 ~vSv~l~~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 203 DASVTAHLTNWAGAFSLEFRVLFL 226 (492)
T ss_pred EEEEEEeecccCCCceEEEEEEEe
Confidence 8776663 122348999874
No 419
>KOG4258|consensus
Probab=80.18 E-value=3.1 Score=49.24 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=32.1
Q ss_pred CCCCCCCCcccccccccccccc-cCCCCCCCCcCcceeeecC
Q psy17146 760 KKPPPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTG 800 (1011)
Q Consensus 760 ~~~~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~ 800 (1011)
.|.||..+.....+++.+.+.| |+.+.++.|+.|.|..+..
T Consensus 610 ~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~wer~ 651 (1025)
T KOG4258|consen 610 IPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVVWERQ 651 (1025)
T ss_pred CCCCcchhhhccCcchheeEEecCCCCCCCceeEEEEEEEec
Confidence 3447777766666676888999 9999999999999987653
No 420
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=79.71 E-value=19 Score=30.71 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=53.2
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCC---CcEEEeecCCCCCEEEEEEEEecCCCceeeEEE
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS---PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 623 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~---~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 623 (1011)
+...|....+..|+++.++|...-..+..+.|.-.-.......+ ..+.+.+++. | ..-.|.+.- .+....+.+.
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C-~g~Q~~~~~~ 82 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNC-SGEQSSASAN 82 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEE-TTEEEEEEEE
T ss_pred EEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEc-CCeEEEeEEe
Confidence 34567888999999999999985444345556543322222222 3577888886 4 577899986 3456778889
Q ss_pred EEEcCCCe
Q psy17146 624 VYLKGRPT 631 (1011)
Q Consensus 624 l~V~~~P~ 631 (1011)
|.|..+|.
T Consensus 83 ItVY~~Pe 90 (91)
T PF03921_consen 83 ITVYKPPE 90 (91)
T ss_dssp EEEEB--S
T ss_pred eEEeCCCC
Confidence 99987774
No 421
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=79.59 E-value=18 Score=30.18 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=32.1
Q ss_pred eEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 575 EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 575 ~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
.+.|.-.+ .........+.......+|+|.+.|.|+............|.|
T Consensus 28 ~~~l~~~~-~k~~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 28 SLFLENPG-KKSLETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEECSS-CEEEEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred hheeeccC-ccccccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 44444433 3334555666777788999999999995324445555555554
No 422
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=79.22 E-value=0.46 Score=39.31 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=31.7
Q ss_pred CCEEEEEEE-EcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCC
Q psy17146 702 HFGVYNCSV-SNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKP 762 (1011)
Q Consensus 702 d~G~Y~C~a-~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 762 (1011)
-.|+-.|.| .|..|.+-......+ ..|..++..++++++++++.++++|+.|.|..
T Consensus 15 vfg~vhcqa~~nsaGgdL~atS~~~-----ayWpyLA~GGG~iLilIii~Lv~CC~~K~K~~ 71 (98)
T PF07204_consen 15 VFGNVHCQASQNSAGGDLQATSSFV-----AYWPYLAAGGGLILILIIIALVCCCRAKHKTS 71 (98)
T ss_pred hccchheeccccCCCCCeEEeehHH-----hhhHHhhccchhhhHHHHHHHHHHhhhhhhhH
Confidence 357888975 488887643333222 23444444455666666666666666555533
No 423
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=78.67 E-value=5.3 Score=42.84 Aligned_cols=67 Identities=9% Similarity=0.219 Sum_probs=40.2
Q ss_pred cEEEEEEccCCCCC-cEEEEEeC---------C---ceeeece--e-------EEEeeecCCceEEEEEEEEEeeccCcC
Q psy17146 150 EIELECISANGKPP-AEITWIDG---------T---GTVMSNV--R-------VTEEASVDGRRTTVKSTLVLTPKKEHH 207 (1011)
Q Consensus 150 ~v~L~C~~~~g~P~-~~i~W~k~---------~---~~l~~~~--~-------~~~~~~~~~~~~~~~~~L~I~~~~~~d 207 (1011)
.+.|+|.+.+.+|. ..++|.|+ + .++..+. . .......|+..+.....+.+ ..++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v~v---~~~~ 292 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSVRV---PTDM 292 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEEEe---CCCC
Confidence 57999997788885 57999999 3 1111111 0 00122224335555555544 4557
Q ss_pred CcEEEEEEEeCC
Q psy17146 208 NTTFTCQAQNTA 219 (1011)
Q Consensus 208 ~G~Y~C~a~n~~ 219 (1011)
...|+|.+.+..
T Consensus 293 ~~~Y~C~V~Hsg 304 (338)
T PHA02865 293 SNQIVCVVFHST 304 (338)
T ss_pred CCCcEEEEEeCC
Confidence 777999998864
No 424
>PHA03281 envelope glycoprotein E; Provisional
Probab=77.81 E-value=1.3e+02 Score=34.22 Aligned_cols=40 Identities=23% Similarity=0.094 Sum_probs=28.7
Q ss_pred CCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCC
Q psy17146 436 SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 475 (1011)
Q Consensus 436 ~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~ 475 (1011)
.+.|.|.+++..++|.|+-......+......+-|.|+..
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~ 336 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGD 336 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCC
Confidence 4579999999999999999888443333334555666653
No 425
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=76.48 E-value=3.5 Score=47.73 Aligned_cols=115 Identities=19% Similarity=0.164 Sum_probs=27.0
Q ss_pred cEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCC-CceEEEEEEeCCCCCcceeee
Q psy17146 44 RVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD-DARYQCQVSTGILGEPAIRSR 122 (1011)
Q Consensus 44 ~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D-~G~Y~C~~~~~~~~~~~~~s~ 122 (1011)
.+.|.| .......+.|..-..+......... . ......|.|.+-.+.- ...|+..+.- ........+.
T Consensus 2 ~~~~~C-~~~~~~~y~W~~~~~~~~~~~~~~~-~--------~~~~~~l~ip~~~L~~G~y~~~~~Vt~-~~~~~~~~~~ 70 (440)
T PF02010_consen 2 HVSLNC-NDASTVTYNWTVFSGPSNSIVQDMD-N--------SSNTPQLTIPPYTLPPGDYTFTLTVTA-SSNPGLSSTD 70 (440)
T ss_dssp ---------------BEEEEES-TT-EEESTT-T----------SSSECEEECES--SCEEEEEEEEE---BCTTEEEEE
T ss_pred Cccccc-ccccceEEEEEEEecCCcCcccccc-c--------cCCceEEEeCcccCCCCCEEEEEEEEE-ECCCCceEEE
Confidence 467889 3344557899864322110000000 0 1233468888877732 2355666651 1222334566
Q ss_pred EEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCC-------CcEEEEEe
Q psy17146 123 FATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKP-------PAEITWID 170 (1011)
Q Consensus 123 ~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P-------~~~i~W~k 170 (1011)
.+.|+|...+-.+.|..+....+..++.+.|... ..-+| ..++.|.-
T Consensus 71 ~~~v~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs-~S~Dpd~~~~~~~l~y~W~C 124 (440)
T PF02010_consen 71 SVTVTVEPSPLVAVIKGGSSRTVGYNSDITLDGS-QSYDPDGPPGDSGLTYSWSC 124 (440)
T ss_dssp EEEEEEE------------------------------------------------
T ss_pred EEEEEEeeccceeEEcCCccceeecCceEEEeeE-EEecccccccCCceEEEEEE
Confidence 6777777766666666554444445567777764 33344 24677874
No 426
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=76.11 E-value=19 Score=29.94 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=25.0
Q ss_pred eEEEEcCCCCCCCEEEEEEE-EcCCCCeEEEEEEEe
Q psy17146 691 STLIIRESRHDHFGVYNCSV-SNPYGSDSVEIMLKP 725 (1011)
Q Consensus 691 ~~L~I~~~~~~d~G~Y~C~a-~N~~G~~~~~~~l~V 725 (1011)
..+........|+|.+.|.| .|..-..+..+.|.|
T Consensus 43 ~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 43 KLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp SEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred eEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 46677778889999999999 565544555555543
No 427
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=75.57 E-value=0.86 Score=38.27 Aligned_cols=30 Identities=13% Similarity=-0.044 Sum_probs=25.1
Q ss_pred cCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 848 FADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 848 ~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
...|+|+++. ..++.+.+|+|+|++.+...
T Consensus 15 sv~v~W~~~~--~~~~~~~~y~v~~~~~~~~~ 44 (85)
T PF00041_consen 15 SVTVSWKPPS--SGNGPITGYRVEYRSVNSTS 44 (85)
T ss_dssp EEEEEEEESS--STSSSESEEEEEEEETTSSS
T ss_pred EEEEEEECCC--CCCCCeeEEEEEEEecccce
Confidence 3466999976 67789999999999988876
No 428
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=75.29 E-value=5.7 Score=45.12 Aligned_cols=161 Identities=15% Similarity=0.207 Sum_probs=44.1
Q ss_pred EEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCce-------------------EEEecCcceeecCceEEE
Q psy17146 196 STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKV-------------------QVSVIGSNRLVEGTDVRL 256 (1011)
Q Consensus 196 ~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~-------------------~~~~~~~~~v~~g~~v~L 256 (1011)
+.|.|.+++.+|+|.|+....+..+.. ....+.|.|+..... .+..........|+++.+
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~-~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~ 167 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWA-HQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL 167 (439)
T ss_dssp ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred CceEEeccccccCeeEEEEecCCCCce-EEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence 579999999999999999999776654 344466666532111 111122224567888877
Q ss_pred EEEcccC-----CCccEEEEEeCCcccCCccccceEEEEee-----ecc--cCCcEEEEEEEEEeeCCcccccCCcEEEE
Q psy17146 257 YCKAEAN-----PSHMKYRWYINDQPVPAAASATELYLTNI-----TRH--QHDSIVKCEVQVSVIGSNRLVEGTDVRLY 324 (1011)
Q Consensus 257 ~C~~~~~-----~~~~~i~W~~~~~~l~~~~~~~~l~i~~~-----~~~--~~~~~~~c~~~~~~~~~~~v~~g~~v~l~ 324 (1011)
.-.+... +-...|.||.-... ..-..+.|... ... .+...-.|.+.. .-.....+......
T Consensus 168 ~v~l~~~~~d~~~f~~~i~W~~~~~~----~~C~~~riYE~CifHP~~p~Cl~P~~~~C~f~s---~~~a~~~~~~~y~~ 240 (439)
T PF02480_consen 168 SVHLQSEAHDDPPFSLEIDWYYMPTD----PSCAEMRIYEPCIFHPHAPECLHPADARCSFAS---PLRAERLASRRYAN 240 (439)
T ss_dssp --EEEEEESSS--EEEEEEEEEE-------TT-SEEEEEHHHHH-TTSHHHHS-TTGGGEES-------SS-SEEEEEEE
T ss_pred eEEEEeccCCCCCeeEEEEEEEecCC----CCCceEEEeeecccCCCCccccCCCCCCceeec---chhHHHHHHHhhcC
Confidence 6555432 22468889863321 11111111000 000 000000011000 00122344555666
Q ss_pred EEeecCCCc----------cEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEc
Q psy17146 325 CKAEANPSH----------MKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHN 374 (1011)
Q Consensus 325 C~~~~~p~~----------~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n 374 (1011)
|...+.+.. ..++|. ...-.|.+.|+... ++|.|.|++.-
T Consensus 241 C~~~~~~~~C~~~~~~~~~~~~~~~---------~~~~~l~f~~a~~~-~sGLYv~V~~~ 290 (439)
T PF02480_consen 241 CSPSGWPRRCPSTSHIEPVPGLRWA---------SNGVDLQFTNAPES-ASGLYVFVVYY 290 (439)
T ss_dssp EBTTC-TTTTEEEEEE---TTEEE----------TTSSSEEESS--GG-G-EEEEEEEEE
T ss_pred CCCCCCcCCCCchhccCcCcccccc---------CCCcceEecCCCcc-cCceEEEEEEE
Confidence 766432211 134443 45667999999987 99999999863
No 429
>PHA03052 Hypothetical protein; Provisional
Probab=74.27 E-value=12 Score=29.49 Aligned_cols=38 Identities=16% Similarity=0.393 Sum_probs=29.0
Q ss_pred CceEEEcCCCcEEEEEEEe---cCCCCeEEEEecCCceeec
Q psy17146 551 PYSVQVDRGAGVNLLCDVD---GNPAPEITWIHEDSDKVVG 588 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~---g~p~p~v~W~k~~~~~~~~ 588 (1011)
|..+.+..|+.++|.|.+. +...+.+.|.-|+......
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~ 44 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEED 44 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEecc
Confidence 4678899999999999994 3334689999998665333
No 430
>KOG1026|consensus
Probab=74.27 E-value=6.5 Score=47.00 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=88.0
Q ss_pred CcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecc
Q psy17146 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGP 391 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P 391 (1011)
...+..|..+++.|...+.+.+ .+.|+.++...........+........ -.+.|.++|..|....++.+.+..++
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp-~~~~~~~~~~~~~~~~~~~~c~~~~~~~---~~~~c~~E~~~~~~~~~v~~~~~~p~ 276 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVP-CHYWFPNCLASSNTNQTSSLCRSECEVL---ENDLCIAENAVARSNPSILLVVDLPK 276 (774)
T ss_pred hhhhcccchheeeeecccCCCc-ceeeecccccccCCCcccccccccceee---echhhHHHHhhhhcCceeeeEEeccc
Confidence 3567889999999999999987 8999998877655433333322222211 12899999999998888888887765
Q ss_pred eEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceeeccC---------CcEEEEeeccCCCeEEEEEEEEcCC
Q psy17146 392 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNS---------PNLTLLMTSDDLAGRYYCKASVMGF 461 (1011)
Q Consensus 392 ~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~---------~~L~I~~v~~~d~G~Y~C~a~n~~~ 461 (1011)
..........- ...-+.-.+.++|.+...|..++........ .-+....-...+.|.|+|.+.|.++
T Consensus 277 ~~~~~~~~~~~---~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~~~e~~~g 352 (774)
T KOG1026|consen 277 AEVLLCSPLSD---HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTLFPELPGG 352 (774)
T ss_pred ccccCCCCccc---cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcceeeecccCc
Confidence 43322111000 1111111224677888899888754321110 1122222245678999999998644
No 431
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=73.29 E-value=12 Score=31.95 Aligned_cols=69 Identities=16% Similarity=0.357 Sum_probs=46.7
Q ss_pred ecCCceeEEecCcEEEEEEEcCC------CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK------TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~------~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
+.|+...+..|++|+..|.+... ...+.|..++..+.. ++|+.+.+ +..++++.+.....+--|
T Consensus 8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~-------~qy~~in~---~~SsVT~~~~~~~~~~L~ 77 (89)
T PF06328_consen 8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG-------SQYRVIND---TVSSVTLPNLNPTGATLF 77 (89)
T ss_dssp EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC-------GCEEEEST---TEEEEEESS--SSEEEEE
T ss_pred EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh-------hHcceeCC---eEEEEEEccCCCCCceEE
Confidence 45778899999999999999852 237999999865432 46666543 346788888777766677
Q ss_pred EEEEE
Q psy17146 106 QCQVS 110 (1011)
Q Consensus 106 ~C~~~ 110 (1011)
-|...
T Consensus 78 cC~l~ 82 (89)
T PF06328_consen 78 CCKLA 82 (89)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 77753
No 432
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=72.45 E-value=48 Score=28.16 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=37.6
Q ss_pred cEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEE
Q psy17146 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719 (1011)
Q Consensus 645 ~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~ 719 (1011)
...|.+.+.+. .+ .+.||.||+.+...... ..+.+ .....|.|+..+....|....
T Consensus 31 ~~~l~l~a~~~-~~-~~~W~vdg~~~g~~~~~--------------~~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RG-PVYWFVDGEPLGTTQPG--------------HQLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CC-cEEEEECCEEcccCCCC--------------CeEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 55666676776 55 79999999999432211 22332 224679999999999886654
No 433
>PHA03052 Hypothetical protein; Provisional
Probab=72.03 E-value=18 Score=28.47 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=28.0
Q ss_pred CceeeecCCcEEEEEEEEecCC---CCeEEEEECCeEecc
Q psy17146 636 RTQFGIPGDTARVECSAFSIPP---PEKVTWSYRGEEIGV 672 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~---p~~v~W~~~g~~l~~ 672 (1011)
....+..|..++|.|.+.-.+. + .|.|.-|+..+..
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a-~V~W~~N~~~~e~ 43 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDA-DVFWISNGMYYEE 43 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcce-EEEEEeCCcEEec
Confidence 4556788999999999974332 4 6899999999854
No 434
>COG1470 Predicted membrane protein [Function unknown]
Probab=71.44 E-value=1.8e+02 Score=32.76 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=26.6
Q ss_pred ceeEEEEcCCCCCCCEEEEEEEEcCC--CCeEEEEEEEecCCC
Q psy17146 689 IKSTLIIRESRHDHFGVYNCSVSNPY--GSDSVEIMLKPQKSF 729 (1011)
Q Consensus 689 ~~~~L~I~~~~~~d~G~Y~C~a~N~~--G~~~~~~~l~V~~~~ 729 (1011)
..-.++|+-....-+|.|....+-.. -+.+.++.+.|..+.
T Consensus 444 ~tV~ltI~vP~~a~aGdY~i~i~~ksDq~s~e~tlrV~V~~sS 486 (513)
T COG1470 444 KTVSLTITVPEDAGAGDYRITITAKSDQASSEDTLRVVVGQSS 486 (513)
T ss_pred ceEEEEEEcCCCCCCCcEEEEEEEeeccccccceEEEEEeccc
Confidence 34577887777777888887665444 355566666665543
No 435
>PF15102 TMEM154: TMEM154 protein family
Probab=69.02 E-value=4.7 Score=37.22 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=6.5
Q ss_pred HHHHHhhhheeeeeec
Q psy17146 743 VILVALTMVVILCQRK 758 (1011)
Q Consensus 743 ~~~~~l~~~~~~~~~~ 758 (1011)
++++++++++++++|+
T Consensus 70 lLLl~vV~lv~~~kRk 85 (146)
T PF15102_consen 70 LLLLSVVCLVIYYKRK 85 (146)
T ss_pred HHHHHHHHheeEEeec
Confidence 3333333444444443
No 436
>PHA03189 UL14 tegument protein; Provisional
Probab=68.84 E-value=62 Score=33.87 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=45.4
Q ss_pred CCceeEEecCcEEEEEEEcC---CCC--ee---EEeeCCeecC----------C-cccCCCCcceEEeecCCCceeEEEE
Q psy17146 34 PQDQTAVVGSRVTLPCRVID---KTG--VL---QWTKDDFALG----------P-HRNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~---~~~--~v---~W~k~~~~l~----------~-~~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
|..+-+..|+.|+++|.+.. +.. .+ .|.-...++. . ....-...+.++..-...+..+|++
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 55678889999999999975 222 11 2321111111 0 0011112355554444445556665
Q ss_pred eecccCCCceEEEEEEeCCC
Q psy17146 95 YPVMLDDDARYQCQVSTGIL 114 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~ 114 (1011)
++..+-+|.|.|...|...
T Consensus 139 -~v~t~taG~Y~CvLrN~tH 157 (348)
T PHA03189 139 -RVSTSTAGMYECVLRNETH 157 (348)
T ss_pred -EEEecccceEEEEeccccc
Confidence 4556779999999988643
No 437
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=67.92 E-value=5.4 Score=46.15 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=0.0
Q ss_pred EecCCCcEEEEeecCCC----CCCceEEEe-----C---CCce--------eeccCCcEEEEeeccCCCeEEEEE--EEE
Q psy17146 401 QVDRGAGVNLLCDVDGN----PAPEITWIH-----E---DSDK--------VVGNSPNLTLLMTSDDLAGRYYCK--ASV 458 (1011)
Q Consensus 401 ~v~~G~~v~l~C~~~g~----p~p~v~W~k-----~---~~~~--------~~~~~~~L~I~~v~~~d~G~Y~C~--a~n 458 (1011)
.+..++.+.|...+.+. ....+.|.. . .... .......|.|..-..+..+.|... +.+
T Consensus 204 ~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~ 283 (440)
T PF02010_consen 204 KVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTD 283 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 47778888877666532 235788987 1 1111 112244567765555555666554 444
Q ss_pred cCCcceeeEEEEEEcCCCeeecc---CcccccCCCeEEEEeEeeeC-CCCCeeEEee
Q psy17146 459 MGFPEVGAEATVYLKGRPTIISH---RTQFGIPGDTARVECSAFSI-PPPEKVTWSY 511 (1011)
Q Consensus 459 ~~~~~~s~~~~v~v~~~p~~~~~---~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~ 511 (1011)
.++....+.+.+.+..+|..-.. +..-....+.+++.|..... ..|..|.|+.
T Consensus 284 ~~~~~~~a~~~~~~n~pP~~g~c~v~P~~G~al~T~Ft~~c~~~~d~~~pL~Y~f~~ 340 (440)
T PF02010_consen 284 SSGSSGSASISFTVNAPPSGGSCSVSPSSGYALETTFTITCSGWTDDDQPLTYQFYY 340 (440)
T ss_dssp ---------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 43333366677777667754332 33335566788999976533 3355666665
No 438
>PF15096 G6B: G6B family
Probab=63.75 E-value=12 Score=35.50 Aligned_cols=23 Identities=30% Similarity=0.790 Sum_probs=16.0
Q ss_pred eeecCCcEEEEEEEEecCCCCeEEE
Q psy17146 639 FGIPGDTARVECSAFSIPPPEKVTW 663 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~p~p~~v~W 663 (1011)
....|+.|+|+|. |.+.|+...|
T Consensus 7 eGrPGDRVnlSCv--GVs~p~RWaW 29 (224)
T PF15096_consen 7 EGRPGDRVNLSCV--GVSHPIRWAW 29 (224)
T ss_pred cCCCCCeeeeeec--cCCCcceeee
Confidence 3568999999997 5555534445
No 439
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=60.37 E-value=8.6 Score=32.02 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=27.3
Q ss_pred CCCCCcccccccccccccc-cCCCCCCCCcCcceeeecC
Q psy17146 763 PPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTG 800 (1011)
Q Consensus 763 ~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~ 800 (1011)
+|.++.+......++.++| +.......+..|.|+++..
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~ 41 (93)
T cd00063 3 PPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREK 41 (93)
T ss_pred CCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeC
Confidence 5666777777788999999 3333235788999998864
No 440
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=59.95 E-value=15 Score=25.69 Aligned_cols=7 Identities=43% Similarity=0.601 Sum_probs=2.9
Q ss_pred EEEeeeh
Q psy17146 734 ILTGVIG 740 (1011)
Q Consensus 734 ~~~~~~~ 740 (1011)
+..|++.
T Consensus 13 Ia~~VvV 19 (40)
T PF08693_consen 13 IAVGVVV 19 (40)
T ss_pred EEEEEEe
Confidence 3344444
No 441
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=59.62 E-value=50 Score=28.08 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=37.7
Q ss_pred cEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccce
Q psy17146 320 DVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSE 380 (1011)
Q Consensus 320 ~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~ 380 (1011)
...|.+.+.+. .. .+.||.||+.+........+.+.-. ..|.|+..+.+..|...
T Consensus 31 ~~~l~l~a~~~-~~-~~~W~vdg~~~g~~~~~~~~~~~~~----~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 31 RQPLVLKAAGG-RG-PVYWFVDGEPLGTTQPGHQLFWQPD----RPGEHTLTVVDAQGRSA 85 (89)
T ss_pred cceEEEEEeCC-CC-cEEEEECCEEcccCCCCCeEEeCCC----CCeeEEEEEEcCCCCEE
Confidence 34444455554 33 8999999999965555566655431 56999999988888754
No 442
>PF08159 NUC153: NUC153 domain; InterPro: IPR012580 This small domain is found in a novel nucleolar family [].; GO: 0005634 nucleus
Probab=59.57 E-value=3.2 Score=26.96 Aligned_cols=11 Identities=45% Similarity=1.132 Sum_probs=10.1
Q ss_pred CCccccccCCC
Q psy17146 916 DPRYSATYGNP 926 (1011)
Q Consensus 916 ~~~~~~~~~~~ 926 (1011)
||||+|.|-||
T Consensus 1 D~RF~~lf~~~ 11 (30)
T PF08159_consen 1 DPRFKALFEDP 11 (30)
T ss_pred CchHHHhhCCc
Confidence 89999999887
No 443
>PHA03112 IL-18 binding protein; Provisional
Probab=53.31 E-value=12 Score=34.55 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=40.0
Q ss_pred eEEecCcEEEEEEEcCCCC---eeEEeeCCe-ecCCcccCCC-----CcceEEeecCCCceeEEEEeecccC-CCceEEE
Q psy17146 38 TAVVGSRVTLPCRVIDKTG---VLQWTKDDF-ALGPHRNLSG-----FDRYAMIGSDEEGDYSLEIYPVMLD-DDARYQC 107 (1011)
Q Consensus 38 ~v~~G~~v~L~C~v~~~~~---~v~W~k~~~-~l~~~~~~~~-----~~r~~i~~~~~~~~~~L~I~~v~~~-D~G~Y~C 107 (1011)
...+|++++|.|+.-+-.+ -+.|..++. .+........ .+..+....+..-...|++.+++.+ +.-.++|
T Consensus 34 p~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TC 113 (141)
T PHA03112 34 PTKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTC 113 (141)
T ss_pred ccCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEE
Confidence 3457999999999986433 689997762 2221111100 0111111111223446777888754 2238888
Q ss_pred EEEe
Q psy17146 108 QVST 111 (1011)
Q Consensus 108 ~~~~ 111 (1011)
+...
T Consensus 114 VL~D 117 (141)
T PHA03112 114 VLMD 117 (141)
T ss_pred EEec
Confidence 7654
No 444
>PHA03112 IL-18 binding protein; Provisional
Probab=51.72 E-value=36 Score=31.51 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=45.8
Q ss_pred ecCCcEEEEEEEEec-CCCCeEEEEECC-eEeccc-C----CCCe--EEecCCcCccceeEEEEcCCCCC-CCEEEEEEE
Q psy17146 641 IPGDTARVECSAFSI-PPPEKVTWSYRG-EEIGVG-S----SDDY--SVLEDPLKEGIKSTLIIRESRHD-HFGVYNCSV 710 (1011)
Q Consensus 641 ~~G~~v~L~C~~~g~-p~p~~v~W~~~g-~~l~~~-~----~~~~--~~~~~~~~~~~~~~L~I~~~~~~-d~G~Y~C~a 710 (1011)
++|+++.|+|.+-+. |.-.-+.|.+++ +..... . .++. .........+....|.+.+++.+ +.-+++|+.
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 458999999999866 653368999765 222210 0 1111 11112222345677888888744 444889988
Q ss_pred EcCCCCeEE
Q psy17146 711 SNPYGSDSV 719 (1011)
Q Consensus 711 ~N~~G~~~~ 719 (1011)
.-..|....
T Consensus 116 ~D~~~~~k~ 124 (141)
T PHA03112 116 MDLDGPIKK 124 (141)
T ss_pred ecCCchhhH
Confidence 766554433
No 445
>PHA03189 UL14 tegument protein; Provisional
Probab=50.64 E-value=56 Score=34.17 Aligned_cols=75 Identities=25% Similarity=0.271 Sum_probs=43.1
Q ss_pred CceEEEcCCCcEEEEEEEecCCCCe--EE-----EEecCCcee--------ecC------------------CCcEEEe-
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNPAPE--IT-----WIHEDSDKV--------VGN------------------SPNLTLL- 596 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p~p~--v~-----W~k~~~~~~--------~~~------------------~~~L~I~- 596 (1011)
|..+.+..|+.+++.|.+-...-|. |. |.-....++ ..+ ...|+++
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 4456678899999999986554442 22 211111110 000 1223332
Q ss_pred ecCCCCCEEEEEEEEecCCCceeeEEEEE
Q psy17146 597 MTSDDLAGRYYCKASVMGFPEVGAEATVY 625 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~ 625 (1011)
++..+-+|.|.|+..|...+.....+.|.
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~~rf~iv 167 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVLQRFVIV 167 (348)
T ss_pred EEEecccceEEEEeccccceeeeEEeeee
Confidence 45678899999999996666655555443
No 446
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=48.26 E-value=6 Score=35.19 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=30.3
Q ss_pred ccCCCCCCCCcccccccccccccccCCCCCCCCcCcceeeecCcc
Q psy17146 758 KVKKPPPGNGIEHHVTADGEKNQCKESDNSSNISDIKLEFRTGSS 802 (1011)
Q Consensus 758 ~~~~~~p~~~~~~~~~~~s~~~~W~~~d~~s~I~~Y~ve~~~~~~ 802 (1011)
....|+|.++.++...- ...|.|....+..+-..|.||++....
T Consensus 19 ~~~lp~P~nv~~~s~nf-~~iL~W~~~~~~~~~~~ytVq~~~~~~ 62 (107)
T PF01108_consen 19 SASLPAPQNVTVDSVNF-KHILRWDPGPGSPPNVTYTVQYKKYGS 62 (107)
T ss_dssp -SSGSSCEEEEEEEETT-EEEEEEEESTTSSSTEEEEEEEEESST
T ss_pred cccCCCCCeeEEEEECC-ceEEEeCCCCCCCCCeEEEEEEEecCC
Confidence 34556888988876644 477899555555577889999994333
No 447
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=47.36 E-value=2.1 Score=29.20 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=9.9
Q ss_pred EEeeehHHHHHHHhhhheeeeeec
Q psy17146 735 LTGVIGCVVILVALTMVVILCQRK 758 (1011)
Q Consensus 735 ~~~~~~~~~~~~~l~~~~~~~~~~ 758 (1011)
+.+++++++++++.++++.+|.||
T Consensus 9 Iv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 9 IVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334444444444444443344333
No 448
>KOG0200|consensus
Probab=46.60 E-value=81 Score=38.13 Aligned_cols=127 Identities=19% Similarity=0.202 Sum_probs=71.7
Q ss_pred cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEE-E-cCCCeee--cCCceeeecCCcEEEEEEEEecCCCCeEEE
Q psy17146 588 GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVY-L-KGRPTII--SHRTQFGIPGDTARVECSAFSIPPPEKVTW 663 (1011)
Q Consensus 588 ~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~-V-~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W 663 (1011)
.....+.+..+...|.|.|+|.+.| ....+.+. . ...+.+. .+.......+..+.+ +...+.+ .+.|
T Consensus 10 ~~~~~~~~~~~~~~~~~~y~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~ 80 (609)
T KOG0200|consen 10 INHWFLIIDSVVPGDKGFYTCLVSN-----INLIISLDDIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQP-FIKW 80 (609)
T ss_pred eccceEEEEEEEecCCccEEEEEec-----CceeeEeecccCcccccccCCCCCcceeeccccee---eeecCCC-ccee
Confidence 3456788999999999999999998 11222222 1 1112222 233444556666666 4445555 7888
Q ss_pred EECCeEec----ccC---CCC--eEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 664 SYRGEEIG----VGS---SDD--YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 664 ~~~g~~l~----~~~---~~~--~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
.+...... ... ... ..+............+.+.++...+.|.|.|...+..+.......+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (609)
T KOG0200|consen 81 GTNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGRTVGDGPNKAFL 149 (609)
T ss_pred eeeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCCcccccccceEE
Confidence 87653211 000 000 0000000013456789999999999999999998755544433333
No 449
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=44.51 E-value=1e+02 Score=26.44 Aligned_cols=69 Identities=25% Similarity=0.334 Sum_probs=39.9
Q ss_pred cEEEEEE-EEecCCCCeEEEEEC--CeE-ec--ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 645 TARVECS-AFSIPPPEKVTWSYR--GEE-IG--VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 645 ~v~L~C~-~~g~p~p~~v~W~~~--g~~-l~--~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
.+.-.|. +.|.|++ .|+|.-+ |.. .. ...++.+.+ .+.+.+-.....|.-..+|+++-..-+-.
T Consensus 22 v~VA~CiSa~GrPpa-~ItW~t~l~G~~etq~~~~~~GT~TV---------~S~y~lVPs~~~~gk~lTCvV~h~~~~~~ 91 (98)
T cd05890 22 MLVATCVSANGKPPS-VVRWDTRLKGEAEFQEIRNQNGTVTV---------ISRYRLVPSREAHKQKLTCIVNYRNDRFT 91 (98)
T ss_pred EEEEEEEcCCCcCCc-EeEEEccCCCceeeeeeCCCCCCEEE---------EEEEEEeECHHHcCCEeEEEEEecccccc
Confidence 3567798 5678888 9999742 221 00 011122222 35666666666677799999987644444
Q ss_pred EEEEE
Q psy17146 719 VEIML 723 (1011)
Q Consensus 719 ~~~~l 723 (1011)
.++.|
T Consensus 92 ~~~~L 96 (98)
T cd05890 92 DSVTL 96 (98)
T ss_pred ccEEe
Confidence 44444
No 450
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=44.36 E-value=1.6e+02 Score=23.43 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=38.4
Q ss_pred CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 656 PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 656 p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+..+...|+++|+.+.. ..+.+. .+..-+..-+.+.+...|.+++.+....|..-..+.+.|
T Consensus 4 ~~~v~H~W~~~g~~~~~---i~l~i~-----g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 4 DETVYHRWYKNGKLVAR---IPLPIS-----GGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred CCEEEEEEEECCEEEEE---EEEecc-----CCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 33346789999988752 111111 111223333344457899999999999998777776655
No 451
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=43.54 E-value=3.1e+02 Score=26.39 Aligned_cols=145 Identities=16% Similarity=0.206 Sum_probs=73.0
Q ss_pred EEEEEEEecCCCCeEEEEecCCceeecC------------------CCcEEEeecCCCCCEEEEEEEE--ec--CCCcee
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSDKVVGN------------------SPNLTLLMTSDDLAGRYYCKAS--VM--GFPEVG 619 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~~~~~~------------------~~~L~I~~v~~~d~G~Y~C~a~--n~--~~~~~s 619 (1011)
+.-.|.++.+-...+.|+-+...+...+ -+.|++.-+..-.--..+|.|. |. +.+..-
T Consensus 4 l~A~CtVetn~~ls~fWkigk~svDaf~rgtthTR~mrngvpvyalVstlk~pw~nviplt~ITCaaC~~nf~~g~~~dl 83 (226)
T PF05955_consen 4 LEASCTVETNSGLSFFWKIGKASVDAFNRGTTHTRLMRNGVPVYALVSTLKVPWLNVIPLTKITCAACPTNFVAGDENDL 83 (226)
T ss_pred eeeEEEEEecCceEEEEEeCCeeEeeecCCceeeeeeeCcEehhheeehhcccccccccccEEEehhcchhhcccCcCCc
Confidence 4457888888888899987653322111 1344444444444456778775 21 111111
Q ss_pred eEEEEEEcCCCeeecCC----cee-eecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccC--CCCeEEecCCcCcccee
Q psy17146 620 AEATVYLKGRPTIISHR----TQF-GIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGS--SDDYSVLEDPLKEGIKS 691 (1011)
Q Consensus 620 ~~~~l~V~~~P~i~~~~----~~~-v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~--~~~~~~~~~~~~~~~~~ 691 (1011)
... ......|.-+. ... -..|+. --|..+. ...| .++|......+..+. ...|.+... .-....+
T Consensus 84 ~sC---t~ksttIPCpgqqrthIfFs~kg~r--AvCitseL~s~P-titWsVgs~rl~n~gftqtwy~iqPG-vCgilrS 156 (226)
T PF05955_consen 84 NSC---TTKSTTIPCPGQQRTHIFFSAKGHR--AVCITSELVSQP-TITWSVGSDRLRNDGFTQTWYGIQPG-VCGILRS 156 (226)
T ss_pred cee---EeecccccCCCcceEEEEEeccCcE--EEEeeccccCCC-eEEEEeccceeecCCccceeecccCc-ceeeEee
Confidence 111 11111122111 111 123332 3465543 3457 899998877776421 112222221 1112356
Q ss_pred EEEEcCCCCCCCEEEEEEEEcC
Q psy17146 692 TLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 692 ~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
...|...+-.|+-.|.|.+.-.
T Consensus 157 ~v~~~R~~G~~~~~y~c~~~~~ 178 (226)
T PF05955_consen 157 EVRIPRAEGRDNVDYLCEIRAL 178 (226)
T ss_pred eeecccCCCCCcccEEeccccc
Confidence 7788888888888999988644
No 452
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=43.47 E-value=90 Score=28.65 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=20.0
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCC------CCeeEEeeC
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDK------TGVLQWTKD 63 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~------~~~v~W~k~ 63 (1011)
..+...|-.-.+..|++|.+.|..... .-.+.|+..
T Consensus 33 F~v~tmPVpk~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~ 74 (137)
T PF12988_consen 33 FTVETMPVPKKIKKGETVEIRCELKREGNYADTRYTIRYFQP 74 (137)
T ss_dssp EEEEE----SS--TTEEEEEEEEEEESS--SS---EEEEE-S
T ss_pred cEEEEeccccccCCCCEEEEEEEEecCceecccEEEEEEEee
Confidence 344556777889999999999998742 125777643
No 453
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=43.35 E-value=7.7 Score=30.11 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=0.0
Q ss_pred EEeeehHHHHHHHhh
Q psy17146 735 LTGVIGCVVILVALT 749 (1011)
Q Consensus 735 ~~~~~~~~~~~~~l~ 749 (1011)
+.|+++++++.++++
T Consensus 15 IaG~Vvgll~ailLI 29 (64)
T PF01034_consen 15 IAGGVVGLLFAILLI 29 (64)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 454
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=43.01 E-value=30 Score=32.41 Aligned_cols=14 Identities=43% Similarity=0.823 Sum_probs=6.0
Q ss_pred HhhhheeeeeeccC
Q psy17146 747 ALTMVVILCQRKVK 760 (1011)
Q Consensus 747 ~l~~~~~~~~~~~~ 760 (1011)
++++++++|.|+++
T Consensus 66 il~lvf~~c~r~kk 79 (154)
T PF04478_consen 66 ILALVFIFCIRRKK 79 (154)
T ss_pred HHHhheeEEEeccc
Confidence 33344444444433
No 455
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=39.24 E-value=1.5e+02 Score=23.57 Aligned_cols=55 Identities=18% Similarity=0.171 Sum_probs=33.4
Q ss_pred CccEEEEEECCeecCCC------cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEE
Q psy17146 332 SHMKYRWYINDQPVPAA------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387 (1011)
Q Consensus 332 ~~~~i~W~k~g~~l~~~------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V 387 (1011)
..+...|+++++.+..- ..-....-+..... ..|.+++.+....|..-......|
T Consensus 5 ~~v~H~W~~~g~~~~~i~l~i~g~r~Rt~S~k~~~~~-~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 5 ETVYHRWYKNGKLVARIPLPISGGRWRTWSSKQNFPD-QPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred CEEEEEEEECCEEEEEEEEeccCCCEEEEEEeecCCC-CCcCEEEEEEcCCCCEEEEEEEEE
Confidence 34688999999876431 11122222333333 789999999988887654444433
No 456
>KOG4802|consensus
Probab=38.60 E-value=27 Score=37.94 Aligned_cols=70 Identities=11% Similarity=-0.055 Sum_probs=44.3
Q ss_pred cccccccc---c------CCCCCCCcccccccccccccccccCCcccccccccCcCCC-CCCCCCCCCCCCccEEEEEee
Q psy17146 803 VSNVHLDY---A------GHDSETGSESVHTRIGVPLAGPVPMDQRYHRYSSADFADA-VFPSLKPDGHNNNGFVFSDFI 872 (1011)
Q Consensus 803 ~p~~~Y~f---A------~G~g~~ss~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i-~W~p~~~~~~ng~~~gY~v~~ 872 (1011)
.|..=|+| | .|-++||-.-..+++.-+..+|.++...+ -..++..+.+ -|.|++++ -++-.|+|.|
T Consensus 217 rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~-v~~dG~~~~~v~w~P~~sd---lPv~~Yki~W 292 (516)
T KOG4802|consen 217 RPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIG-VQFDGRYMLKVVWCPSKSD---LPVEKYKITW 292 (516)
T ss_pred CcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeee-eeecceEEEEEEeCCCCCC---CcceeeEEEe
Confidence 46666888 3 37777774444456655556677766555 3334544544 88886653 4677799999
Q ss_pred eccC
Q psy17146 873 RDYN 876 (1011)
Q Consensus 873 r~~~ 876 (1011)
--+-
T Consensus 293 s~~v 296 (516)
T KOG4802|consen 293 SLYV 296 (516)
T ss_pred ehhh
Confidence 7554
No 457
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=37.31 E-value=16 Score=42.30 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=17.1
Q ss_pred CCeEEEEEeeehHHHHHHHhhhheeee
Q psy17146 729 FPLLLILTGVIGCVVILVALTMVVILC 755 (1011)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 755 (1011)
..-+||++|+++-++++++++++++++
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil~~~ 292 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIILYWK 292 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHHHHH
Confidence 345788888887666555555554443
No 458
>PHA03240 envelope glycoprotein M; Provisional
Probab=34.23 E-value=59 Score=31.97 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=38.8
Q ss_pred eEEEcCCCcEEEEEEEecCCCCeEEEEe-------cCCc----------------------------eeecCCCcEEEee
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPAPEITWIH-------EDSD----------------------------KVVGNSPNLTLLM 597 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~p~v~W~k-------~~~~----------------------------~~~~~~~~L~I~~ 597 (1011)
.+.+.+|++|+|.-.---.|.-.+.|++ .++. ...-.+++|.|..
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 3556778888886655545666888888 2111 0111247899999
Q ss_pred cCCCCCEEEEEEEEe
Q psy17146 598 TSDDLAGRYYCKASV 612 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n 612 (1011)
+..+|.|+|. +-.+
T Consensus 112 vn~sd~~nYc-r~k~ 125 (258)
T PHA03240 112 LNLSDAGEYC-RKKC 125 (258)
T ss_pred EeecCcchhh-hccC
Confidence 9999999994 4443
No 459
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.16 E-value=4.7 Score=36.38 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=8.6
Q ss_pred EEEEEeeehHHHHHHH
Q psy17146 732 LLILTGVIGCVVILVA 747 (1011)
Q Consensus 732 ~~~~~~~~~~~~~~~~ 747 (1011)
.+|++|++++++++++
T Consensus 67 ~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHH
Confidence 4555566665554443
No 460
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=33.87 E-value=1.2e+02 Score=24.03 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=20.5
Q ss_pred eeecCCcEEEEEEEEecCCCCeEEEEECC
Q psy17146 639 FGIPGDTARVECSAFSIPPPEKVTWSYRG 667 (1011)
Q Consensus 639 ~v~~G~~v~L~C~~~g~p~p~~v~W~~~g 667 (1011)
.+..|+.++|.... ....+..+.|...+
T Consensus 7 ~~~~g~~v~f~~~~-~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 7 YVPTGQPVTFTASS-SDGSPVTYSWDFGD 34 (69)
T ss_dssp CEBTTSEEEEEETT-TTSSECEEEEE-SS
T ss_pred EEcCCCEEEEEEEc-cCCCCeEEEEEECC
Confidence 46789999999887 33444589999988
No 461
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=33.58 E-value=1.8e+02 Score=23.01 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=14.2
Q ss_pred EEecCcEEEEEEEcCCCCeeEEee
Q psy17146 39 AVVGSRVTLPCRVIDKTGVLQWTK 62 (1011)
Q Consensus 39 v~~G~~v~L~C~v~~~~~~v~W~k 62 (1011)
|..|++++|.=- +...+.|++
T Consensus 2 v~~G~N~TL~Gp---~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLVGP---PDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEeCC---CCCceEEEE
Confidence 667888777532 345799994
No 462
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=32.69 E-value=2.7e+02 Score=22.61 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=37.0
Q ss_pred cCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE--EEEcCCCCeEE
Q psy17146 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC--SVSNPYGSDSV 719 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C--~a~N~~G~~~~ 719 (1011)
.|..+.|.+...+...+..+.|.+.+..... .. .... .-...|.|.. .+.|..|+.+.
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~--~~-------------~~~~-----~y~~~G~y~v~l~v~n~~g~~~~ 72 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTSST--GP-------------TVTH-----TYTKPGTYTVTLTVTNAVGSASA 72 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCccC--CC-------------CEEE-----EeCCCcEEEEEEEEEcCCCcEEE
Confidence 6788889887665323347888764432110 00 1111 1235566664 56799997777
Q ss_pred EEEEEe
Q psy17146 720 EIMLKP 725 (1011)
Q Consensus 720 ~~~l~V 725 (1011)
.+.+.|
T Consensus 73 ~~~i~v 78 (79)
T smart00089 73 TVTVVV 78 (79)
T ss_pred EEEEEE
Confidence 777765
No 463
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=30.21 E-value=48 Score=31.10 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=24.5
Q ss_pred EEEEeeehHHHHHHHhhhheeeeeeccCCCCC
Q psy17146 733 LILTGVIGCVVILVALTMVVILCQRKVKKPPP 764 (1011)
Q Consensus 733 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p 764 (1011)
-+++|+++++.+.++|+++.++++...+++.-
T Consensus 49 nIVIGvVVGVGg~ill~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALVFIFCIRRKKT 80 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhheeEEEecccC
Confidence 35677777788788888888888888776653
No 464
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=29.57 E-value=53 Score=32.37 Aligned_cols=23 Identities=52% Similarity=1.164 Sum_probs=12.8
Q ss_pred CCcccCCCCCCCCCCCCC-CCCCc
Q psy17146 925 NPYLRQSPNLPPPHTGQP-PPPPY 947 (1011)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~-~~~~~ 947 (1011)
+|+-..+...|+|..++| +||||
T Consensus 156 ~~~~~~~~~~Ppp~~~~~~~pp~y 179 (179)
T PF13908_consen 156 QPYPPYPPQYPPPYPAQPQGPPPY 179 (179)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Confidence 444444445666666665 56666
No 465
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=29.43 E-value=3.5e+02 Score=22.84 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=28.6
Q ss_pred cEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCC-CCCCCEEEEEEEE-cCCCC
Q psy17146 645 TARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRES-RHDHFGVYNCSVS-NPYGS 716 (1011)
Q Consensus 645 ~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~d~G~Y~C~a~-N~~G~ 716 (1011)
...|.|.+.+......|+--++-..+............+...... .....+.- ..+..|-|.|... |..+.
T Consensus 17 etSL~Ci~s~W~s~esitigrd~~~~~nqh~~plEv~~de~R~~a-k~vvwkrekas~~~GayyCegk~r~~~~ 89 (96)
T PF10430_consen 17 ETSLTCIASDWSSHESITIGRDFEALMNQHQEPLEVPQDETRPHA-KKVVWKREKASEAIGAYYCEGKVRDEVT 89 (96)
T ss_dssp -EEEEEEE-SS--SS--EEEE-TTTSTT-------EEEETTSSSE-EEEEE-TTT-SS--EEEEEEEEETTEEE
T ss_pred ceeEEEEecCCcCCCcEEecccchhhhhcccCCcccccCCCCccc-ceEEEEeeccccccceEEEEEEecCceE
Confidence 348999998876655676655533332222222233333222221 12222322 3455899999987 65443
No 466
>PHA03240 envelope glycoprotein M; Provisional
Probab=28.53 E-value=88 Score=30.84 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=44.4
Q ss_pred eeeecCCCcEEEEEEccCCCCCcEEEEEe-------CCce-eeeceeEEE---------ee-ecCCc--eEEEEEEEEEe
Q psy17146 142 TLYTTEDREIELECISANGKPPAEITWID-------GTGT-VMSNVRVTE---------EA-SVDGR--RTTVKSTLVLT 201 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~P~~~i~W~k-------~~~~-l~~~~~~~~---------~~-~~~~~--~~~~~~~L~I~ 201 (1011)
.+.+++|.++.|--. ..-.|.-.+.|++ +++. ...--.|.. .. ..+.+ ..-..++|.|.
T Consensus 32 evt~r~G~nVTLga~-~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~ 110 (258)
T PHA03240 32 EHTTREGDPLLLGGG-HGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIA 110 (258)
T ss_pred ecccccCCceeeCCc-ccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEE
Confidence 445678999988764 3334666899998 3222 111111111 00 11111 22234689999
Q ss_pred eccCcCCcEEEEEEEeCCCC
Q psy17146 202 PKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 202 ~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
.+..+|.|.|.-.-....|.
T Consensus 111 ~vn~sd~~nYcr~k~~~~g~ 130 (258)
T PHA03240 111 HLNLSDAGEYCRKKCPPKGD 130 (258)
T ss_pred EEeecCcchhhhccCCCCCC
Confidence 99999999996554444443
No 467
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=27.71 E-value=1.4e+02 Score=24.29 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=16.6
Q ss_pred EEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhhe
Q psy17146 718 SVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVV 752 (1011)
Q Consensus 718 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~ 752 (1011)
...+.+.+.+.......++.++-+++++.++++++
T Consensus 15 ~~~ivv~vd~~~~~~~avaVviPl~L~LCiLvl~y 49 (74)
T PF11857_consen 15 DVDIVVEVDDGGGTVNAVAVVIPLVLLLCILVLIY 49 (74)
T ss_pred ccEEEEEEccCCCceeEEEEeHHHHHHHHHHHHHH
Confidence 34555566555433334444444444444444443
No 468
>KOG1924|consensus
Probab=27.45 E-value=1.5e+02 Score=35.50 Aligned_cols=15 Identities=40% Similarity=0.702 Sum_probs=6.7
Q ss_pred ccccceeeeEEEeeeee
Q psy17146 989 HVPTKVRQQVVCFQSKV 1005 (1011)
Q Consensus 989 ~~~~~~~~~~~~~~~~~ 1005 (1011)
-||.+.-+ -||=-||
T Consensus 634 I~p~d~s~--~cFWvkv 648 (1102)
T KOG1924|consen 634 IVPRDLSE--NCFWVKV 648 (1102)
T ss_pred cCccccCc--cceeeec
Confidence 44554433 2554443
No 469
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=27.28 E-value=42 Score=27.60 Aligned_cols=28 Identities=11% Similarity=0.008 Sum_probs=20.8
Q ss_pred CcCCCCCCCCCCCCCCCccEEEEEeeeccC
Q psy17146 847 DFADAVFPSLKPDGHNNNGFVFSDFIRDYN 876 (1011)
Q Consensus 847 ~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~ 876 (1011)
+...|+|+++.... +...+|.|+|+..+
T Consensus 15 ~~~~v~W~~~~~~~--~~~~~y~v~~~~~~ 42 (93)
T cd00063 15 TSVTLSWTPPEDDG--GPITGYVVEYREKG 42 (93)
T ss_pred CEEEEEECCCCCCC--CcceeEEEEEeeCC
Confidence 34466999965433 67889999999875
No 470
>PRK02710 plastocyanin; Provisional
Probab=27.16 E-value=1e+02 Score=27.90 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=13.2
Q ss_pred eeecCCceeEEecCcEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLP 48 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~ 48 (1011)
+...|..+++..|+.|+|.
T Consensus 42 ~~F~P~~i~v~~Gd~V~~~ 60 (119)
T PRK02710 42 LAFEPSTLTIKAGDTVKWV 60 (119)
T ss_pred eEEeCCEEEEcCCCEEEEE
Confidence 4445777888888877764
No 471
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=25.94 E-value=23 Score=37.57 Aligned_cols=7 Identities=57% Similarity=1.383 Sum_probs=0.0
Q ss_pred CCCCCcc
Q psy17146 942 PPPPPYS 948 (1011)
Q Consensus 942 ~~~~~~~ 948 (1011)
--||||.
T Consensus 282 r~PPpyv 288 (290)
T PF05454_consen 282 RSPPPYV 288 (290)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 3455554
No 472
>PF13216 DUF4024: Protein of unknown function (DUF4024)
Probab=24.84 E-value=33 Score=21.89 Aligned_cols=11 Identities=73% Similarity=0.948 Sum_probs=8.3
Q ss_pred eeeeeeeeecC
Q psy17146 1001 FQSKVELLLTH 1011 (1011)
Q Consensus 1001 ~~~~~~~~~~~ 1011 (1011)
|-.|-||||||
T Consensus 25 f~q~nelllth 35 (35)
T PF13216_consen 25 FMQKNELLLTH 35 (35)
T ss_pred hhccCeeeecC
Confidence 56677888887
No 473
>KOG4152|consensus
Probab=24.27 E-value=69 Score=35.98 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=38.2
Q ss_pred cccccccc---c---CCCCCCC-cccccc-cccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeee
Q psy17146 803 VSNVHLDY---A---GHDSETG-SESVHT-RIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIR 873 (1011)
Q Consensus 803 ~p~~~Y~f---A---~G~g~~s-s~~~~t-~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r 873 (1011)
.+..-|+| | .|.|..| ...+.| .++.|. +|+.+.... +..-..+.|+||...+ .|.|+.|..|.-
T Consensus 655 v~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~-apS~~ri~k----~~eGi~l~weppt~p~-sg~Iieys~ylA 727 (830)
T KOG4152|consen 655 VTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPT-APSGARIKK----TIEGISLVWEPPTKPG-SGTIIEYSPYLA 727 (830)
T ss_pred ccccceeeeeeeeeccCCCchhhheeeeeccCCCCC-Ccccccccc----cccceeecccCCCCCC-CcceEEeehhhH
Confidence 56778999 4 5666666 223334 344555 344443332 3333456999987766 377777766544
No 474
>PF15069 FAM163: FAM163 family
Probab=24.25 E-value=34 Score=31.57 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=9.4
Q ss_pred EeeehHHHHHHHhhhheeee
Q psy17146 736 TGVIGCVVILVALTMVVILC 755 (1011)
Q Consensus 736 ~~~~~~~~~~~~l~~~~~~~ 755 (1011)
.|.+.+.++|+.+++++++|
T Consensus 9 tGgILAtVILLcIIaVLCYC 28 (143)
T PF15069_consen 9 TGGILATVILLCIIAVLCYC 28 (143)
T ss_pred echHHHHHHHHHHHHHHHHH
Confidence 44444444444555544444
No 475
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=23.76 E-value=1.3e+02 Score=23.80 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=13.8
Q ss_pred eecCCcEEEEEEEEecCCCCeEEEEE
Q psy17146 640 GIPGDTARVECSAFSIPPPEKVTWSY 665 (1011)
Q Consensus 640 v~~G~~v~L~C~~~g~p~p~~v~W~~ 665 (1011)
+..|.+++|. |.+.. .|+|+|
T Consensus 2 v~~G~N~TL~----Gp~~~-~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDG-PVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCC-ceEEEE
Confidence 5668888884 33434 699984
No 476
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=23.03 E-value=2.6e+02 Score=22.06 Aligned_cols=51 Identities=12% Similarity=0.222 Sum_probs=37.1
Q ss_pred eEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee
Q psy17146 575 EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII 633 (1011)
Q Consensus 575 ~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~ 633 (1011)
-+.|+-||.++......+|++..+ .+.|+|+-.. ....++.+.-...|++.
T Consensus 12 PiswYcN~TRLlRlt~~Tlt~~~l----tcNFtCV~qS----Gh~hSiWItW~~qPVLQ 62 (71)
T PF11049_consen 12 PISWYCNGTRLLRLTQQTLTVVTL----TCNFTCVGQS----GHRHSIWITWYAQPVLQ 62 (71)
T ss_pred cccEEECCceeeeecCCeEeeeee----eEEeeecCCC----CCCceEEEEEcCchhhh
Confidence 578999999988888888888654 4889998653 34566666666666543
No 477
>smart00816 Amb_V_allergen Amb V Allergen. Amb V is an Ambrosia sp (ragweed) pollen allergen. Amb t V has been shown to contain a C-terminal helix as the major T cell epitope. Free sulphhydryl groups also play a major role in the T cell recognition of cross-reactivity T cell epitopes within these related allergens.
Probab=21.96 E-value=45 Score=23.04 Aligned_cols=8 Identities=75% Similarity=1.381 Sum_probs=5.1
Q ss_pred eEEEeeee
Q psy17146 997 QVVCFQSK 1004 (1011)
Q Consensus 997 ~~~~~~~~ 1004 (1011)
||||+.||
T Consensus 30 qvVCYeS~ 37 (45)
T smart00816 30 QVVCYESK 37 (45)
T ss_pred eEEEeehH
Confidence 66666665
No 478
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=21.91 E-value=76 Score=31.26 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=11.3
Q ss_pred EEEEEeeehHHHHHHHhhhhee
Q psy17146 732 LLILTGVIGCVVILVALTMVVI 753 (1011)
Q Consensus 732 ~~~~~~~~~~~~~~~~l~~~~~ 753 (1011)
.+++++++++++++++++++++
T Consensus 78 ~~iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 78 TGIIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred eeeeeehhhHHHHHHHhHhhhe
Confidence 3455566655555544444443
No 479
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=21.70 E-value=29 Score=30.41 Aligned_cols=10 Identities=40% Similarity=0.368 Sum_probs=0.4
Q ss_pred cccccccccc
Q psy17146 825 RIGVPLAGPV 834 (1011)
Q Consensus 825 ~~~~P~~~P~ 834 (1011)
...||.+||.
T Consensus 94 ~pvVPnAPPA 103 (118)
T PF14991_consen 94 EPVVPNAPPA 103 (118)
T ss_dssp ---------B
T ss_pred CccCCCCCch
Confidence 3456666663
No 480
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.45 E-value=23 Score=32.11 Aligned_cols=31 Identities=16% Similarity=0.465 Sum_probs=14.2
Q ss_pred EEEEEeeehHHHHHHHhhhheeeeeeccCCC
Q psy17146 732 LLILTGVIGCVVILVALTMVVILCQRKVKKP 762 (1011)
Q Consensus 732 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 762 (1011)
..+++.+++.++.+++++++++|+.+|++++
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444455555555555554444443
No 481
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=21.05 E-value=14 Score=30.21 Aligned_cols=23 Identities=39% Similarity=0.782 Sum_probs=9.2
Q ss_pred eehHHHHHHHhhhheeeeeeccC
Q psy17146 738 VIGCVVILVALTMVVILCQRKVK 760 (1011)
Q Consensus 738 ~~~~~~~~~~l~~~~~~~~~~~~ 760 (1011)
+++++++++++++++++++++++
T Consensus 6 ~~~g~~~ll~~v~~~~~~~rr~~ 28 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVCFRRCK 28 (75)
T ss_dssp HHHHHHHHHHHHHHHHCCCTT--
T ss_pred HHHHHHHHHHhheeEEEEEeeEc
Confidence 34444444444444444444433
No 482
>PF15102 TMEM154: TMEM154 protein family
Probab=20.71 E-value=82 Score=29.38 Aligned_cols=30 Identities=30% Similarity=0.275 Sum_probs=21.6
Q ss_pred EEEeeehHHHHHHHhhhheeeeeeccCCCC
Q psy17146 734 ILTGVIGCVVILVALTMVVILCQRKVKKPP 763 (1011)
Q Consensus 734 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 763 (1011)
+++.++-.+++++++++++++..+.++++.
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeeccc
Confidence 455555567777778888888888877764
No 483
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=20.65 E-value=4.6e+02 Score=21.17 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=36.6
Q ss_pred CCCcEEEEEEEec-CCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEE--ecCCCceeeEEEEEE
Q psy17146 558 RGAGVNLLCDVDG-NPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKAS--VMGFPEVGAEATVYL 626 (1011)
Q Consensus 558 ~G~~~~l~C~~~g-~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~--n~~~~~~s~~~~l~V 626 (1011)
.+..+.|.....+ .....+.|...+...... ... .......|.|+..+. | ..++.+....+.|
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~--~~~---~~~y~~~G~y~v~l~v~n-~~g~~~~~~~i~v 78 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTSSTG--PTV---THTYTKPGTYTVTLTVTN-AVGSASATVTVVV 78 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCccCC--CCE---EEEeCCCcEEEEEEEEEc-CCCcEEEEEEEEE
Confidence 5777888877655 334577887765432222 222 335567889976664 5 3445555555554
No 484
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=20.13 E-value=40 Score=29.85 Aligned_cols=49 Identities=6% Similarity=-0.002 Sum_probs=29.8
Q ss_pred ccccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 824 TRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 824 t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
.....+..+|.|+.... ..-...++|+|.+. ......|.|+|+..+...
T Consensus 16 ~~~~~~lp~P~nv~~~s----~nf~~iL~W~~~~~---~~~~~~ytVq~~~~~~~~ 64 (107)
T PF01108_consen 16 SPASASLPAPQNVTVDS----VNFKHILRWDPGPG---SPPNVTYTVQYKKYGSSS 64 (107)
T ss_dssp ----SSGSSCEEEEEEE----ETTEEEEEEEESTT---SSSTEEEEEEEEESSTSC
T ss_pred ccccccCCCCCeeEEEE----ECCceEEEeCCCCC---CCCCeEEEEEEEecCCcc
Confidence 34456677888887766 23334559999432 246788999999444443
Done!