Query psy17146
Match_columns 1011
No_of_seqs 487 out of 3897
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 23:07:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b43_A Titin; I-SET IG fold, e 100.0 1.6E-65 5.4E-70 614.2 63.1 537 25-726 3-569 (570)
2 3dmk_A DOWN syndrome cell adhe 100.0 6E-64 2E-68 629.0 60.2 662 26-725 37-807 (816)
3 1e07_A Carcinoembryonic antige 100.0 1.6E-61 5.6E-66 589.9 65.7 583 30-726 2-639 (642)
4 3dmk_A DOWN syndrome cell adhe 100.0 2.2E-56 7.7E-61 560.2 53.4 582 27-630 138-811 (816)
5 3v2a_R Vascular endothelial gr 100.0 4.2E-60 1.4E-64 591.2 16.7 612 26-728 30-757 (772)
6 3b43_A Titin; I-SET IG fold, e 100.0 7.1E-53 2.4E-57 504.6 46.6 440 134-728 5-477 (570)
7 1e07_A Carcinoembryonic antige 100.0 8.4E-51 2.9E-55 495.3 59.0 483 36-627 120-639 (642)
8 3v2a_R Vascular endothelial gr 100.0 4.2E-48 1.4E-52 482.8 20.8 512 33-633 132-761 (772)
9 2ec8_A MAST/stem cell growth f 100.0 2.2E-47 7.7E-52 453.1 24.0 421 27-632 36-514 (524)
10 2ec8_A MAST/stem cell growth f 100.0 4.6E-46 1.6E-50 441.8 33.9 431 123-727 28-510 (524)
11 2ocw_A Polymeric-immunoglobuli 100.0 9.4E-44 3.2E-48 428.3 49.4 465 32-632 5-550 (585)
12 3qs9_E FL cytokine receptor; i 100.0 4.6E-45 1.6E-49 428.6 36.3 420 142-728 57-511 (527)
13 2ocw_A Polymeric-immunoglobuli 100.0 1.1E-43 3.9E-48 427.6 48.7 464 137-728 4-547 (585)
14 2rcj_C Light chain; immunoglob 100.0 3.2E-43 1.1E-47 417.3 45.5 468 30-716 3-513 (523)
15 1z7z_I Intercellular adhesion 100.0 8.6E-44 2.9E-48 413.9 38.6 427 29-629 1-450 (450)
16 3qs9_E FL cytokine receptor; i 100.0 4.7E-44 1.6E-48 420.0 34.3 437 30-633 51-515 (527)
17 1z7z_I Intercellular adhesion 100.0 1.2E-42 4E-47 404.3 34.2 402 140-727 6-449 (450)
18 3laf_A Deleted in colorectal c 100.0 9.1E-40 3.1E-44 374.1 37.5 343 310-727 28-401 (403)
19 3kld_A Contactin 4, axcam, BIG 100.0 2.3E-39 7.8E-44 367.6 35.6 335 316-726 21-382 (384)
20 3qs7_E FL cytokine receptor; i 100.0 7.8E-40 2.7E-44 374.1 28.6 378 98-631 3-417 (423)
21 3qs7_E FL cytokine receptor; i 100.0 3.9E-39 1.3E-43 368.3 31.4 323 312-726 57-413 (423)
22 1cs6_A Axonin-1; neural cell a 100.0 2.5E-38 8.4E-43 359.4 35.7 334 316-726 20-381 (382)
23 3p3y_A Neurofascin; IG domains 100.0 1.3E-38 4.5E-43 364.5 32.2 344 311-727 25-403 (404)
24 3laf_A Deleted in colorectal c 100.0 2.1E-38 7.3E-43 362.7 33.3 365 25-476 19-403 (403)
25 1bih_A Hemolin; insect immunit 100.0 2.4E-38 8.3E-43 361.2 32.9 339 311-725 14-394 (395)
26 2v5m_A Dscam; neurobiology SPL 100.0 5.3E-38 1.8E-42 357.5 33.4 330 313-725 14-387 (388)
27 3kld_A Contactin 4, axcam, BIG 100.0 1.6E-38 5.5E-43 360.6 28.6 333 146-627 21-382 (384)
28 1cs6_A Axonin-1; neural cell a 100.0 3.1E-37 1.1E-41 350.3 32.1 355 26-472 3-380 (382)
29 3p3y_A Neurofascin; IG domains 100.0 4.7E-37 1.6E-41 351.6 28.0 355 133-628 15-403 (404)
30 1bih_A Hemolin; insect immunit 100.0 1.7E-36 6E-41 345.8 29.7 354 134-626 6-394 (395)
31 2v5m_A Dscam; neurobiology SPL 100.0 1.7E-36 5.9E-41 345.0 26.4 334 142-626 13-387 (388)
32 2rcj_C Light chain; immunoglob 100.0 3.2E-34 1.1E-38 339.9 35.2 344 310-724 7-417 (523)
33 1wio_A CD4, T-cell surface gly 100.0 2.5E-35 8.5E-40 331.9 24.2 338 36-470 3-361 (363)
34 1wio_A CD4, T-cell surface gly 100.0 6.8E-35 2.3E-39 328.3 21.2 297 313-725 4-361 (363)
35 1qgc_4 Protein (immunoglobulin 100.0 1.8E-33 6E-38 325.7 30.1 374 29-461 3-427 (438)
36 1qgc_4 Protein (immunoglobulin 100.0 2.8E-34 9.7E-39 332.4 20.4 340 310-724 8-436 (438)
37 2rik_A Titin; I-SET IG fold, p 100.0 8.8E-33 3E-37 299.6 30.1 260 389-726 4-283 (284)
38 1igt_B IGG2A intact antibody - 100.0 2.8E-32 9.7E-37 315.9 25.4 373 32-462 5-434 (444)
39 1qz1_A Neural cell adhesion mo 100.0 3E-31 1E-35 288.6 29.7 261 390-726 2-289 (291)
40 2jll_A NCAM2, neural cell adhe 100.0 2.7E-31 9.1E-36 302.2 26.5 291 544-879 1-337 (389)
41 2rik_A Titin; I-SET IG fold, p 100.0 2.7E-30 9.3E-35 279.9 32.1 272 25-388 3-283 (284)
42 2yd9_A Receptor-type tyrosine- 100.0 6.5E-31 2.2E-35 287.9 26.5 264 388-728 4-292 (304)
43 1iga_A IGA1; immunoglobulin; N 100.0 2.8E-30 9.6E-35 301.6 32.6 378 30-461 4-442 (475)
44 1hzh_H IGG, immunoglobulin hea 100.0 5E-31 1.7E-35 306.6 25.4 371 32-461 5-442 (457)
45 4fqp_A Poliovirus receptor; im 100.0 1.9E-30 6.6E-35 285.4 28.5 286 30-391 3-306 (313)
46 2jll_A NCAM2, neural cell adhe 100.0 2.5E-30 8.4E-35 294.2 30.1 325 390-826 1-386 (389)
47 2wim_A N-CAM 2, NCAM2, neural 100.0 1.8E-30 6.1E-35 282.4 26.2 261 389-728 3-285 (291)
48 1qz1_A Neural cell adhesion mo 100.0 4.8E-30 1.6E-34 279.1 29.2 277 26-389 1-290 (291)
49 4fom_A Poliovirus receptor-rel 100.0 7E-31 2.4E-35 288.3 21.0 282 34-392 6-303 (308)
50 1igy_B IGG1 intact antibody MA 100.0 2.9E-32 9.8E-37 314.8 9.9 356 32-462 4-424 (434)
51 1igt_B IGG2A intact antibody - 100.0 5E-31 1.7E-35 305.4 19.6 350 309-715 6-433 (444)
52 2yd9_A Receptor-type tyrosine- 100.0 1.5E-29 5.2E-34 277.0 28.3 279 25-394 4-296 (304)
53 2wim_A N-CAM 2, NCAM2, neural 100.0 1.7E-29 5.8E-34 274.7 27.2 277 26-391 3-286 (291)
54 2o26_X MAST/stem cell growth f 100.0 1.3E-29 4.4E-34 275.5 24.1 258 389-727 11-288 (290)
55 4fqp_A Poliovirus receptor; im 100.0 4.8E-29 1.6E-33 274.3 24.1 255 393-728 3-305 (313)
56 1hzh_H IGG, immunoglobulin hea 100.0 1.5E-29 5.1E-34 294.1 21.2 350 310-717 7-444 (457)
57 1iga_A IGA1; immunoglobulin; N 100.0 3.8E-28 1.3E-32 283.5 32.8 350 310-717 8-444 (475)
58 1igy_B IGG1 intact antibody MA 100.0 2.8E-31 9.5E-36 306.5 5.8 343 309-716 5-424 (434)
59 3ejj_X Macrophage colony-stimu 100.0 1.3E-28 4.4E-33 267.4 26.1 259 390-727 4-281 (289)
60 2y25_A Myomesin; structural pr 100.0 6.8E-30 2.3E-34 281.6 16.0 267 390-726 7-314 (317)
61 3rjd_A High affinity immunoglo 100.0 1.8E-28 6.2E-33 262.0 24.6 247 390-725 1-260 (262)
62 3u83_A Poliovirus receptor-rel 100.0 4.6E-28 1.6E-32 268.7 25.4 288 27-392 14-323 (331)
63 4dep_C Interleukin-1 receptor 100.0 7.7E-29 2.6E-33 277.3 18.8 264 397-728 14-334 (349)
64 1zvo_C Myeloma immunoglobulin 100.0 7.6E-27 2.6E-31 274.2 36.6 394 33-472 6-503 (512)
65 4fom_A Poliovirus receptor-rel 100.0 8.8E-29 3E-33 271.5 18.4 252 399-728 8-301 (308)
66 1ry7_B FGFR-3, fibroblast grow 100.0 3.3E-29 1.1E-33 278.4 15.0 282 396-728 14-328 (334)
67 3rjd_A High affinity immunoglo 100.0 1.3E-27 4.4E-32 255.4 26.5 253 28-387 2-260 (262)
68 2o26_X MAST/stem cell growth f 100.0 4.6E-28 1.6E-32 263.3 22.8 244 311-630 20-290 (290)
69 2nzi_A Titin; IG-domain, FNIII 100.0 5.7E-28 2E-32 264.6 23.7 251 543-833 3-300 (305)
70 1itb_B Type 1 interleukin-1 re 100.0 2.1E-28 7.2E-33 269.4 18.9 259 398-726 13-313 (315)
71 2y23_A Myomesin; structural pr 100.0 7.3E-28 2.5E-32 264.6 22.7 261 398-726 9-311 (312)
72 3oq3_B IFN-alpha/beta binding 100.0 7.2E-28 2.5E-32 266.8 21.9 258 398-725 37-328 (329)
73 4dkd_C Macrophage colony-stimu 100.0 2.3E-28 8E-33 265.8 17.6 260 389-727 3-281 (292)
74 3u83_A Poliovirus receptor-rel 100.0 1.4E-27 4.7E-32 264.9 24.0 254 392-727 16-320 (331)
75 2wng_A Tyrosine-protein phosph 100.0 4E-27 1.4E-31 260.6 26.1 243 28-276 4-261 (327)
76 3o4o_C Interleukin-1 receptor 100.0 1.3E-28 4.3E-33 274.3 12.5 268 387-726 15-334 (339)
77 2y25_A Myomesin; structural pr 99.9 1.2E-27 4E-32 263.6 17.0 262 312-629 15-316 (317)
78 3vh8_G Killer cell immunoglobu 99.9 5.6E-27 1.9E-31 258.0 21.8 269 381-727 15-313 (316)
79 2wng_A Tyrosine-protein phosph 99.9 4.5E-26 1.6E-30 252.2 29.2 275 392-723 5-316 (327)
80 3ejj_X Macrophage colony-stimu 99.9 1.1E-26 3.7E-31 252.2 22.1 248 312-631 13-284 (289)
81 1ry7_B FGFR-3, fibroblast grow 99.9 1.2E-27 4.2E-32 265.7 14.7 252 310-630 15-329 (334)
82 3vh8_G Killer cell immunoglobu 99.9 3.2E-26 1.1E-30 252.0 25.3 275 25-391 22-315 (316)
83 2oz4_A Intercellular adhesion 99.9 3.2E-26 1.1E-30 245.0 24.6 243 311-629 11-265 (265)
84 2oz4_A Intercellular adhesion 99.9 5.8E-27 2E-31 250.8 18.5 233 401-727 14-264 (265)
85 4dep_C Interleukin-1 receptor 99.9 1.2E-26 4.2E-31 259.4 21.0 285 34-389 14-333 (349)
86 3mjg_X Beta-type platelet-deri 99.9 1.2E-26 4E-31 252.0 20.3 259 391-727 1-278 (289)
87 1itb_B Type 1 interleukin-1 re 99.9 5E-27 1.7E-31 258.4 15.7 251 312-628 14-314 (315)
88 1zvo_C Myeloma immunoglobulin 99.9 5.6E-25 1.9E-29 258.3 34.0 380 310-718 7-494 (512)
89 3oq3_B IFN-alpha/beta binding 99.9 3.4E-26 1.2E-30 253.3 21.4 244 312-627 38-329 (329)
90 2y23_A Myomesin; structural pr 99.9 1.9E-25 6.6E-30 245.2 27.3 265 34-388 8-311 (312)
91 2v5y_A Receptor-type tyrosine- 99.9 2.9E-25 9.8E-30 273.4 31.1 452 316-878 89-611 (731)
92 4dkd_C Macrophage colony-stimu 99.9 1.6E-26 5.5E-31 251.3 17.2 264 26-391 3-283 (292)
93 3o4o_C Interleukin-1 receptor 99.9 1.1E-26 3.8E-31 258.5 15.8 291 24-387 15-333 (339)
94 3mjg_X Beta-type platelet-deri 99.9 1.6E-25 5.4E-30 243.0 22.4 279 28-396 1-285 (289)
95 2nzi_A Titin; IG-domain, FNIII 99.9 1.9E-24 6.5E-29 236.5 24.5 276 26-382 3-283 (305)
96 2v5y_A Receptor-type tyrosine- 99.9 7.5E-25 2.6E-29 269.7 23.5 360 404-878 90-506 (731)
97 1za6_B IGG heavy chain; immuno 99.9 4.8E-24 1.6E-28 237.5 21.3 189 32-227 5-212 (344)
98 2wqr_A IG epsilon chain C regi 99.9 7.3E-24 2.5E-28 233.8 17.1 239 26-277 6-261 (323)
99 2j8h_A Titin, connectin; cardi 99.9 8.2E-23 2.8E-27 207.6 21.4 176 543-726 3-196 (197)
100 2a38_A Titin; Z1Z2, structural 99.9 6.3E-23 2.1E-27 207.9 20.5 176 543-726 4-194 (194)
101 3lcy_A Titin; A-BAND, IG tande 99.9 2.8E-22 9.5E-27 203.5 21.2 179 541-727 4-196 (197)
102 2wqr_A IG epsilon chain C regi 99.9 5.2E-24 1.8E-28 235.0 9.0 240 406-716 25-309 (323)
103 2wv3_A Neuroplastin; igcam, me 99.9 5.9E-22 2E-26 200.0 22.9 176 543-726 2-189 (190)
104 1za6_B IGG heavy chain; immuno 99.9 8.8E-23 3E-27 227.3 17.6 253 397-718 7-332 (344)
105 2yd1_A Tyrosine-protein phosph 99.9 5.5E-22 1.9E-26 204.1 21.1 174 543-727 5-200 (212)
106 2yd6_A PTPRD protein; hydrolas 99.9 8.3E-22 2.8E-26 202.8 22.0 179 541-725 3-202 (212)
107 2va4_A NCAM2, N-CAM 2, neural 99.9 9.9E-22 3.4E-26 198.6 22.1 177 544-726 2-192 (192)
108 4fa8_A Secreted protein BARF1; 99.9 9.8E-23 3.4E-27 206.8 14.0 162 553-720 2-195 (203)
109 2iep_A Muscle-specific kinase 99.9 3.3E-22 1.1E-26 202.2 17.6 176 541-726 4-189 (192)
110 1epf_A NCAM, protein (neural c 99.9 1.2E-21 4E-26 197.9 20.8 174 544-725 2-189 (191)
111 2c5d_C AXL oncogene, tyrosine- 99.9 9.2E-22 3.1E-26 199.5 19.0 169 544-725 2-191 (195)
112 3rbs_A Myomesin-1; immunoglobu 99.9 1E-21 3.5E-26 200.5 19.2 169 545-726 4-206 (207)
113 2v5t_A NCAM2, N-CAM 2, neural 99.9 1.6E-21 5.6E-26 196.4 20.5 173 544-725 2-186 (189)
114 2v44_A NCAM2, neural cell adhe 99.9 6.6E-21 2.2E-25 192.1 22.0 171 546-725 4-185 (189)
115 1rhf_A Tyrosine-protein kinase 99.9 1.9E-21 6.5E-26 194.7 17.3 167 544-725 2-181 (182)
116 3k0w_A Mucosa-associated lymph 99.9 2.4E-21 8.2E-26 200.3 18.3 169 543-727 17-202 (218)
117 2a38_A Titin; Z1Z2, structural 99.9 8.1E-21 2.8E-25 192.2 20.8 188 26-232 4-193 (194)
118 2yd6_A PTPRD protein; hydrolas 99.9 1.4E-20 4.8E-25 193.5 21.5 194 25-237 4-207 (212)
119 2j8h_A Titin, connectin; cardi 99.9 9.1E-21 3.1E-25 192.4 19.5 189 26-233 3-196 (197)
120 3sgj_C Human FCG3A receptor; r 99.9 2.3E-21 8E-26 197.6 14.8 167 543-728 6-175 (204)
121 2yd1_A Tyrosine-protein phosph 99.9 1.9E-20 6.7E-25 192.5 21.0 190 25-235 4-201 (212)
122 1f97_A Junction adhesion molec 99.9 9.7E-21 3.3E-25 194.6 18.7 176 545-727 2-207 (212)
123 3ojm_B Fibroblast growth facto 99.8 1.9E-20 6.6E-25 195.2 19.6 183 542-726 13-220 (231)
124 1fnl_A Low affinity immunoglob 99.8 5.6E-21 1.9E-25 189.9 14.7 167 543-727 6-174 (175)
125 3k0w_A Mucosa-associated lymph 99.8 1.1E-20 3.7E-25 195.3 17.0 193 390-636 18-210 (218)
126 3sob_L Antibody light chain; b 99.8 1.5E-20 5.1E-25 197.0 18.2 192 27-223 24-227 (237)
127 2d3v_A Leukocyte immunoglobuli 99.8 6.4E-21 2.2E-25 193.4 13.9 165 543-715 4-180 (196)
128 3rbs_A Myomesin-1; immunoglobu 99.8 2.2E-20 7.5E-25 190.6 17.7 178 28-227 4-202 (207)
129 2c1o_A IGK-C protein; FAB frag 99.8 1.4E-20 4.7E-25 199.7 16.6 173 544-718 38-246 (254)
130 1epf_A NCAM, protein (neural c 99.8 3.3E-20 1.1E-24 187.2 18.6 187 26-231 1-190 (191)
131 2r15_A Myomesin-1; sarcomeric 99.8 6.2E-20 2.1E-24 188.6 21.0 162 558-726 16-209 (212)
132 3b5h_A Cervical EMMPRIN, HAB18 99.8 6E-20 2E-24 184.1 19.6 164 553-727 7-183 (184)
133 2vr9_A Roundabout 1, ROBO; imm 99.8 2E-20 6.7E-25 193.2 16.3 174 543-725 8-204 (217)
134 2v44_A NCAM2, neural cell adhe 99.8 7.7E-20 2.6E-24 184.2 20.3 182 29-233 4-188 (189)
135 3lcy_A Titin; A-BAND, IG tande 99.8 5.7E-20 2E-24 186.3 19.4 187 26-233 6-195 (197)
136 3grw_A Fibroblast growth facto 99.8 8.4E-20 2.9E-24 191.9 21.0 183 543-727 10-218 (241)
137 1ugn_A LIR1, leukocyte immunog 99.8 3.6E-20 1.2E-24 188.2 17.6 175 543-725 4-196 (198)
138 2iep_A Muscle-specific kinase 99.8 2E-20 6.9E-25 188.9 15.2 174 387-630 4-192 (192)
139 2v5t_A NCAM2, N-CAM 2, neural 99.8 2.2E-20 7.7E-25 188.0 15.0 185 27-231 2-187 (189)
140 2v9r_A Roundabout homolog 1; p 99.8 3.9E-20 1.3E-24 190.1 16.9 175 543-728 8-203 (212)
141 3p2t_A Leukocyte immunoglobuli 99.8 3.4E-20 1.1E-24 188.1 15.8 173 544-725 5-194 (196)
142 1f2q_A High affinity immunoglo 99.8 9.8E-21 3.3E-25 188.3 11.5 167 542-727 2-171 (176)
143 2c5d_C AXL oncogene, tyrosine- 99.8 5E-20 1.7E-24 186.6 16.6 165 390-626 2-191 (195)
144 3s97_C Contactin-1; carbonic a 99.8 6.5E-20 2.2E-24 186.6 17.2 169 547-726 11-200 (201)
145 3bkj_L WO2 IGG2A FAB fragment 99.8 4.9E-20 1.7E-24 195.1 16.8 191 27-222 34-241 (252)
146 2d3v_A Leukocyte immunoglobuli 99.8 8.2E-20 2.8E-24 185.2 17.6 177 26-220 4-180 (196)
147 1f97_A Junction adhesion molec 99.8 1.3E-19 4.3E-24 186.2 19.1 196 28-234 2-207 (212)
148 2ifg_A High affinity nerve gro 99.8 2.6E-20 8.8E-25 207.4 14.6 178 543-727 157-345 (347)
149 2gi7_A GPVI protein; IG-like d 99.8 4.5E-20 1.6E-24 184.9 14.8 168 543-725 7-183 (184)
150 1nbq_A JAM, junctional adhesio 99.8 1.4E-20 4.6E-25 193.0 11.0 181 544-725 4-207 (209)
151 3jz7_A MCAR, CAR, coxsackievir 99.8 3.9E-20 1.3E-24 190.3 14.4 169 548-726 4-211 (214)
152 3r4d_A CEA-related cell adhesi 99.8 1.4E-19 4.7E-24 185.4 18.4 167 550-727 5-200 (208)
153 1vca_A VCAM-D1,2, human vascul 99.8 4.3E-19 1.5E-23 180.5 21.8 191 29-238 2-201 (202)
154 4fa8_A Secreted protein BARF1; 99.8 2.3E-20 8E-25 189.3 12.0 150 312-463 2-192 (203)
155 3ry4_A Low affinity immunoglob 99.8 6.4E-20 2.2E-24 181.2 14.9 163 544-725 4-169 (170)
156 3sgj_C Human FCG3A receptor; r 99.8 1.6E-19 5.6E-24 183.9 18.2 159 313-477 17-177 (204)
157 1rhf_A Tyrosine-protein kinase 99.8 1.1E-19 3.8E-24 181.7 16.7 178 27-232 2-181 (182)
158 2x1w_L Vascular endothelial gr 99.8 1.2E-19 4.2E-24 186.6 17.3 176 550-728 13-208 (213)
159 1vca_A VCAM-D1,2, human vascul 99.8 1.4E-19 4.9E-24 184.0 17.5 175 549-726 5-196 (202)
160 2v9r_A Roundabout homolog 1; p 99.8 5.1E-20 1.8E-24 189.2 13.7 200 25-239 7-207 (212)
161 3p2t_A Leukocyte immunoglobuli 99.8 2.1E-19 7.2E-24 182.2 17.9 176 26-220 4-179 (196)
162 1uct_A Immunoglobulin alpha FC 99.8 1.2E-19 3.9E-24 187.0 15.8 172 543-727 8-198 (218)
163 1mq8_A ICAM-1, intercellular a 99.8 1E-19 3.5E-24 193.6 15.4 207 30-265 2-217 (291)
164 3bp6_B Programmed cell death 1 99.8 2.3E-19 7.8E-24 182.9 17.4 171 547-727 5-193 (202)
165 2wv3_A Neuroplastin; igcam, me 99.8 7.1E-19 2.4E-23 177.3 20.4 159 311-472 10-188 (190)
166 3ojm_B Fibroblast growth facto 99.8 2.7E-19 9.2E-24 186.5 17.3 202 23-238 11-225 (231)
167 1f2q_A High affinity immunoglo 99.8 1.1E-19 3.8E-24 180.7 13.6 169 27-237 4-174 (176)
168 3bqu_C 3H6 FAB light chain; be 99.8 2E-20 7E-25 195.5 8.7 190 27-221 23-224 (233)
169 3r4d_A CEA-related cell adhesi 99.8 4.7E-19 1.6E-23 181.4 18.6 188 30-237 2-203 (208)
170 4frw_A Poliovirus receptor-rel 99.8 9.7E-19 3.3E-23 180.2 21.1 191 33-233 5-212 (218)
171 2fbo_J V1V2;, variable region- 99.8 2.8E-19 9.5E-24 189.0 17.3 178 547-725 5-250 (250)
172 3mj8_L Stimulatory hamster ant 99.8 1.5E-19 5.2E-24 185.9 14.7 177 545-723 2-209 (213)
173 1oll_A NK receptor; immune sys 99.8 6.2E-19 2.1E-23 177.3 18.7 182 27-232 4-186 (188)
174 4f80_A Butyrophilin subfamily 99.8 5.6E-19 1.9E-23 183.5 19.0 171 551-728 11-214 (226)
175 1ugn_A LIR1, leukocyte immunog 99.8 2.4E-19 8.1E-24 182.1 15.5 190 26-232 4-196 (198)
176 1b6u_A KIR2DL3, P58 killer cel 99.8 4.5E-19 1.6E-23 186.8 18.1 230 26-274 6-239 (257)
177 1fnl_A Low affinity immunoglob 99.8 6.6E-19 2.2E-23 174.9 18.1 156 313-474 17-174 (175)
178 4f80_A Butyrophilin subfamily 99.8 1.6E-18 5.6E-23 180.0 21.9 184 34-229 11-210 (226)
179 1oll_A NK receptor; immune sys 99.8 2.3E-19 7.8E-24 180.5 14.8 168 544-725 4-186 (188)
180 1qok_A MFE-23 recombinant anti 99.8 6.4E-19 2.2E-23 189.8 19.2 190 28-219 27-254 (282)
181 3bp6_B Programmed cell death 1 99.8 1.1E-18 3.8E-23 177.7 20.0 186 30-236 5-197 (202)
182 3nl4_L Antigen binding fragmen 99.8 6.8E-19 2.3E-23 181.0 18.1 186 28-216 2-198 (213)
183 2zg1_A Sialic acid-binding IG- 99.8 5.7E-19 2E-23 181.7 17.4 188 31-232 4-213 (214)
184 1uct_A Immunoglobulin alpha FC 99.8 3.8E-19 1.3E-23 183.1 15.9 188 25-235 7-199 (218)
185 2va4_A NCAM2, N-CAM 2, neural 99.8 7.5E-19 2.6E-23 177.3 17.7 166 390-627 2-192 (192)
186 2gi7_A GPVI protein; IG-like d 99.8 3.7E-19 1.3E-23 178.3 15.1 163 25-220 6-168 (184)
187 3d9a_L Light chain of hyhel10 99.8 6.6E-19 2.3E-23 181.1 17.4 188 30-222 4-203 (213)
188 3grw_A Fibroblast growth facto 99.8 1.7E-18 5.8E-23 181.8 20.8 199 27-239 11-223 (241)
189 4frw_A Poliovirus receptor-rel 99.8 7.5E-19 2.6E-23 181.0 17.8 172 549-726 4-210 (218)
190 2j6e_L IGM, FAB light chain; a 99.8 1.4E-19 4.8E-24 189.2 11.5 191 28-222 21-225 (234)
191 1lk3_L 9D7 light chain; antige 99.8 1.2E-18 4.2E-23 178.7 18.4 187 30-222 4-202 (210)
192 3mj8_L Stimulatory hamster ant 99.8 8.3E-19 2.8E-23 180.4 17.0 190 28-222 2-203 (213)
193 3jz7_A MCAR, CAR, coxsackievir 99.8 8.6E-19 3E-23 180.2 16.8 186 30-234 3-212 (214)
194 1nbq_A JAM, junctional adhesio 99.8 8.2E-20 2.8E-24 187.1 9.0 196 27-233 4-208 (209)
195 2vr9_A Roundabout 1, ROBO; imm 99.8 3.2E-19 1.1E-23 184.1 13.3 190 24-223 6-197 (217)
196 3d9a_L Light chain of hyhel10 99.8 1E-18 3.5E-23 179.7 16.9 175 547-723 4-209 (213)
197 2x1w_L Vascular endothelial gr 99.8 1.7E-18 5.7E-23 178.1 18.3 188 33-238 13-211 (213)
198 1nkr_A P58-CL42 KIR; inhibitor 99.8 3E-18 1E-22 174.3 19.7 176 26-218 7-183 (201)
199 2ny1_B T-cell surface glycopro 99.8 9.2E-19 3.2E-23 175.4 15.3 150 553-727 4-179 (184)
200 2fbo_J V1V2;, variable region- 99.8 3.8E-19 1.3E-23 188.0 13.0 189 30-222 5-239 (250)
201 3sbw_C Programmed cell death 1 99.8 1.1E-17 3.6E-22 173.3 23.6 193 30-236 4-213 (222)
202 1hng_A CD2; T lymphocyte adhes 99.8 4.9E-19 1.7E-23 175.6 12.6 150 553-725 5-174 (176)
203 1lk3_L 9D7 light chain; antige 99.8 2E-18 7E-23 177.0 17.2 173 547-720 4-205 (210)
204 3sbw_C Programmed cell death 1 99.8 3.1E-18 1.1E-22 177.3 18.4 173 548-727 5-211 (222)
205 2pet_A Lutheran blood group gl 99.8 1.7E-18 5.9E-23 180.5 16.1 176 549-725 5-229 (231)
206 2r15_A Myomesin-1; sarcomeric 99.8 4.7E-18 1.6E-22 174.5 19.1 173 41-233 16-209 (212)
207 2ifg_A High affinity nerve gro 99.8 4.5E-20 1.6E-24 205.4 4.0 188 364-630 136-347 (347)
208 3ry4_A Low affinity immunoglob 99.8 1.9E-18 6.4E-23 170.6 15.3 164 27-232 4-169 (170)
209 1sy6_A T-cell surface glycopro 99.8 7E-19 2.4E-23 179.1 12.5 153 556-725 15-202 (204)
210 2c1o_A IGK-C protein; FAB frag 99.8 3.8E-18 1.3E-22 180.8 18.6 191 27-222 38-245 (254)
211 3s97_C Contactin-1; carbonic a 99.8 2.4E-18 8.1E-23 175.0 16.3 171 394-627 12-200 (201)
212 3r06_A Anti-mouse CD3epsilon a 99.8 3.7E-18 1.3E-22 175.5 17.4 190 28-222 2-203 (213)
213 3mj6_A Junctional adhesion mol 99.8 3.2E-18 1.1E-22 183.0 17.3 214 28-252 6-255 (268)
214 1p6f_A NKP46, natural cytotoxi 99.8 7.4E-18 2.5E-22 176.1 19.4 186 26-235 6-192 (242)
215 2xzc_L FAB A.17 light chain; i 99.8 5.8E-18 2E-22 174.5 18.2 188 30-222 4-205 (216)
216 1jbj_A CD3 epsilon and gamma e 99.8 5.4E-19 1.8E-23 177.2 9.6 144 554-717 9-179 (186)
217 4i0k_A CD276 antigen; immunogl 99.8 1.6E-18 5.6E-23 179.4 13.6 191 35-236 3-208 (222)
218 4fmk_A Poliovirus receptor-rel 99.8 5.6E-18 1.9E-22 175.4 17.2 195 33-235 7-220 (225)
219 1q0x_L FAB 9B1, light chain; a 99.8 5.7E-18 2E-22 173.9 16.5 186 30-221 4-204 (212)
220 3s96_B 3B5H10 FAB light chain; 99.8 2.5E-18 8.5E-23 177.5 13.8 191 28-222 2-210 (218)
221 1nkr_A P58-CL42 KIR; inhibitor 99.8 4.6E-18 1.6E-22 173.0 15.5 162 542-714 6-184 (201)
222 1q0x_L FAB 9B1, light chain; a 99.8 4E-18 1.4E-22 175.1 15.1 174 547-721 4-209 (212)
223 3s96_B 3B5H10 FAB light chain; 99.8 3.6E-18 1.2E-22 176.3 14.8 175 545-721 2-214 (218)
224 2gki_A Nuclease; anti-DNA anti 99.8 6.1E-18 2.1E-22 182.9 17.2 188 30-219 25-258 (291)
225 1b6u_A KIR2DL3, P58 killer cel 99.8 5.3E-18 1.8E-22 178.6 16.3 205 389-667 6-240 (257)
226 3tv3_L PGT128 light chain, IG 99.8 3.2E-18 1.1E-22 175.7 14.3 174 546-722 3-206 (211)
227 3tv3_L PGT128 light chain, IG 99.8 2.8E-18 9.7E-23 176.1 13.7 188 29-222 3-201 (211)
228 3pv7_A B7-H6, IG-like domain-c 99.8 1.4E-17 4.9E-22 175.6 19.5 176 549-725 8-224 (248)
229 1hng_A CD2; T lymphocyte adhes 99.8 3.3E-18 1.1E-22 169.6 13.2 158 35-224 4-168 (176)
230 2if7_A SLAM family member 6; N 99.8 1.3E-17 4.4E-22 168.2 17.7 155 549-723 3-188 (193)
231 3r06_A Anti-mouse CD3epsilon a 99.8 3.9E-18 1.3E-22 175.3 13.3 179 545-723 2-209 (213)
232 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.8 1.5E-17 5.2E-22 176.3 18.2 204 28-233 4-247 (256)
233 1nfd_E H57 FAB; complex (immun 99.8 2.1E-18 7E-23 177.3 11.0 188 30-222 3-202 (212)
234 1dr9_A B7-1 (CD80), T lymphocy 99.7 8.8E-18 3E-22 170.9 15.5 164 553-724 3-198 (201)
235 4i0k_A CD276 antigen; immunogl 99.7 4.1E-18 1.4E-22 176.4 13.2 169 553-728 4-207 (222)
236 2ghw_B Anti-SARS SCFV antibody 99.7 2.3E-17 7.9E-22 173.9 19.2 185 33-220 8-229 (247)
237 1p6f_A NKP46, natural cytotoxi 99.7 8E-18 2.7E-22 175.9 15.4 171 543-727 6-191 (242)
238 3juy_B 3B3 single chain varian 99.7 1.9E-17 6.4E-22 175.6 18.5 193 26-220 5-244 (256)
239 2ny1_B T-cell surface glycopro 99.7 1.3E-17 4.4E-22 167.0 16.3 153 399-631 4-182 (184)
240 3nl4_L Antigen binding fragmen 99.7 9E-18 3.1E-22 172.6 15.1 166 545-711 2-198 (213)
241 3b5h_A Cervical EMMPRIN, HAB18 99.7 2.5E-17 8.5E-22 164.9 17.8 154 313-473 8-182 (184)
242 1c1e_H Catalytic antibody 1E9 99.7 8.2E-18 2.8E-22 173.7 13.5 187 32-222 5-210 (219)
243 2p1y_A Bispecific alpha/beta T 99.7 5.1E-17 1.8E-21 170.1 19.8 188 30-219 3-222 (238)
244 1f3r_B FV antibody fragment; I 99.7 1.9E-17 6.4E-22 175.7 16.3 186 32-219 5-232 (257)
245 2if7_A SLAM family member 6; N 99.7 3E-17 1E-21 165.6 16.7 164 32-222 3-182 (193)
246 3mj6_A Junctional adhesion mol 99.7 1.3E-17 4.5E-22 178.2 14.7 175 545-726 6-236 (268)
247 1dee_B IGM RF 2A2; FAB-IBP com 99.7 5.1E-17 1.7E-21 168.2 18.6 188 33-222 6-217 (223)
248 3pv7_A B7-H6, IG-like domain-c 99.7 2.2E-17 7.5E-22 174.2 16.1 193 32-232 8-224 (248)
249 2ghw_B Anti-SARS SCFV antibody 99.7 4.7E-17 1.6E-21 171.5 18.5 169 552-725 10-240 (247)
250 3uzq_A Anti-dengue MAB 4E11; d 99.7 2.4E-17 8.1E-22 174.5 16.1 202 29-236 3-246 (253)
251 1q9r_B S25-2 FAB (IGG1K) heavy 99.7 2.4E-17 8.4E-22 170.6 15.8 187 33-223 6-214 (222)
252 3umt_A SCFV heavy chain and li 99.7 4E-17 1.4E-21 173.1 17.7 202 32-236 7-247 (256)
253 3pl6_D MBP peptide / T-cell re 99.7 3.9E-18 1.3E-22 182.3 10.0 195 25-222 24-242 (268)
254 4fmk_A Poliovirus receptor-rel 99.7 6.3E-17 2.2E-21 167.4 18.9 171 551-725 8-217 (225)
255 1hxm_B Gamma-delta T-cell rece 99.7 5.5E-17 1.9E-21 170.3 18.6 197 28-228 2-225 (242)
256 3sob_H Antibody heavy chain, l 99.7 2.5E-17 8.4E-22 174.6 16.0 188 32-222 28-241 (256)
257 1c1e_H Catalytic antibody 1E9 99.7 2E-17 6.7E-22 170.9 14.8 171 550-724 6-217 (219)
258 1nqb_A Single-chain antibody f 99.7 4E-17 1.4E-21 172.8 17.6 199 31-233 4-232 (256)
259 1nfd_E H57 FAB; complex (immun 99.7 2E-18 6.8E-23 177.4 7.1 170 547-719 3-204 (212)
260 1dn0_B IGM-kappa cold agglutin 99.7 5.7E-17 1.9E-21 168.9 18.2 194 33-228 6-223 (232)
261 3sob_L Antibody light chain; b 99.7 1.4E-17 4.9E-22 174.3 13.7 180 544-724 24-233 (237)
262 3auv_A SC-DSFV derived from th 99.7 4.6E-17 1.6E-21 174.6 18.0 168 544-714 12-236 (276)
263 2fbj_H IGA-kappa J539 FAB (hea 99.7 7E-17 2.4E-21 166.8 18.6 187 33-222 6-211 (220)
264 2znx_A SCFV; fluorotryptohpan, 99.7 4.5E-17 1.5E-21 171.0 17.3 170 546-718 3-229 (242)
265 2pet_A Lutheran blood group gl 99.7 2.7E-17 9.2E-22 171.3 15.5 179 32-218 5-211 (231)
266 2xzc_L FAB A.17 light chain; i 99.7 5.2E-17 1.8E-21 167.3 17.3 171 551-723 7-211 (216)
267 3qib_D 2B4 beta chain; IG doma 99.7 2.2E-17 7.4E-22 176.7 14.7 196 26-222 26-245 (270)
268 3esu_F Antibody 14B7* light ch 99.7 1.1E-16 3.8E-21 169.0 20.0 184 28-217 5-231 (250)
269 1nqb_A Single-chain antibody f 99.7 5.5E-17 1.9E-21 171.8 17.6 173 550-726 6-232 (256)
270 3bkj_L WO2 IGG2A FAB fragment 99.7 3.7E-17 1.3E-21 172.9 16.2 176 544-721 34-245 (252)
271 3gkz_A Anti-methamphetamine si 99.7 4.5E-17 1.5E-21 172.8 16.8 202 30-234 11-249 (257)
272 4dzb_B Vbeta2 (MAIT T cell rec 99.7 3.1E-17 1.1E-21 172.8 15.3 192 29-222 3-221 (246)
273 3auv_A SC-DSFV derived from th 99.7 7.1E-17 2.4E-21 173.2 17.9 187 27-219 12-236 (276)
274 2p1y_A Bispecific alpha/beta T 99.7 1E-16 3.6E-21 167.8 18.8 163 547-714 3-222 (238)
275 3esu_F Antibody 14B7* light ch 99.7 6.5E-17 2.2E-21 170.8 16.9 165 545-712 5-231 (250)
276 1mq8_A ICAM-1, intercellular a 99.7 2.9E-17 9.8E-22 174.7 14.1 250 394-727 3-282 (291)
277 1dr9_A B7-1 (CD80), T lymphocy 99.7 1.7E-16 5.8E-21 161.3 19.3 178 35-222 2-191 (201)
278 2wbj_D OB TCR; transmembrane, 99.7 5.4E-18 1.9E-22 182.2 8.6 196 26-222 23-246 (279)
279 3q5y_A TCR N15 beta; IG, T cel 99.7 7.5E-17 2.6E-21 169.1 17.0 193 28-222 3-214 (240)
280 3d9a_H Heavy chain of hyhel10 99.7 2E-17 6.8E-22 169.6 12.1 181 33-222 6-204 (210)
281 1f3r_B FV antibody fragment; I 99.7 4.4E-17 1.5E-21 172.8 15.0 170 551-725 7-243 (257)
282 2zg1_A Sialic acid-binding IG- 99.7 6.9E-17 2.4E-21 166.0 15.9 162 549-725 5-213 (214)
283 1mju_H Immunoglobulin MS6-12; 99.7 3.9E-17 1.3E-21 169.6 13.9 184 32-222 5-207 (227)
284 3liz_H 4C3 monoclonal antibody 99.7 3.1E-17 1.1E-21 173.4 13.3 187 33-223 6-211 (253)
285 1jbj_A CD3 epsilon and gamma e 99.7 8.5E-18 2.9E-22 168.5 8.4 140 314-461 10-177 (186)
286 1gsm_A Madcam-1, mucosal addre 99.7 4.4E-16 1.5E-20 155.9 20.1 173 29-222 7-195 (210)
287 4ei6_B Vbeta16 XV19 type II na 99.7 1.4E-16 4.7E-21 167.7 16.8 194 28-222 3-220 (245)
288 1op3_H FAB 2G12, heavy chain; 99.7 9.9E-17 3.4E-21 166.3 15.4 187 33-222 6-215 (225)
289 1q9r_B S25-2 FAB (IGG1K) heavy 99.7 6.8E-17 2.3E-21 167.2 14.0 169 551-724 7-220 (222)
290 2znx_A SCFV; fluorotryptohpan, 99.7 1.2E-16 4.2E-21 167.6 16.0 185 28-218 2-222 (242)
291 1moe_A Anti-CEA MAB T84.66; an 99.7 1.8E-16 6.2E-21 166.2 17.1 165 546-713 3-220 (240)
292 1pz5_B Heavy chain of FAB (SYA 99.7 9.4E-17 3.2E-21 165.9 14.6 184 32-222 5-211 (220)
293 1svz_A Immunoglobulin;, single 99.7 2.4E-16 8.2E-21 166.1 17.8 165 546-713 3-228 (247)
294 2dru_A Chimera of CD48 antigen 99.7 1.9E-16 6.5E-21 157.3 16.1 155 34-222 6-171 (180)
295 3eow_R Poliovirus receptor; im 99.7 2.7E-17 9.2E-22 170.1 10.2 181 33-222 5-202 (221)
296 1mju_H Immunoglobulin MS6-12; 99.7 1.4E-16 4.8E-21 165.3 15.7 172 550-725 6-215 (227)
297 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.7 2.6E-16 9E-21 166.7 18.0 167 545-716 4-235 (256)
298 3uzq_A Anti-dengue MAB 4E11; d 99.7 1.9E-16 6.5E-21 167.5 16.8 176 547-726 4-243 (253)
299 3nfj_J T cell receptor beta ch 99.7 1.9E-16 6.4E-21 166.7 16.7 194 28-222 2-220 (245)
300 3umt_A SCFV heavy chain and li 99.7 2.6E-16 9E-21 166.7 17.8 170 552-726 10-244 (256)
301 3mtr_A N-CAM-1, NCAM-1, neural 99.7 1.1E-16 3.9E-21 164.6 14.1 161 627-825 17-210 (215)
302 1svz_A Immunoglobulin;, single 99.7 3.2E-16 1.1E-20 165.1 17.7 184 29-218 3-228 (247)
303 1ypz_F T-cell receptor gamma c 99.7 3E-16 1E-20 163.1 17.2 189 30-222 4-217 (230)
304 3bae_H WO2 IGG2A FAB fragment 99.7 2.3E-16 7.8E-21 163.9 16.1 186 33-222 6-216 (228)
305 1i1r_A GP130, interleukin-6 re 99.7 4.8E-17 1.7E-21 177.2 11.4 199 634-879 10-246 (303)
306 3ux9_B SCFV antibody; five hel 99.7 3.8E-16 1.3E-20 165.6 17.9 181 31-219 6-236 (256)
307 2j6e_L IGM, FAB light chain; a 99.7 2.2E-17 7.7E-22 172.4 8.2 176 545-722 21-230 (234)
308 3omz_A Human vdelta1 gamma del 99.7 1.3E-16 4.4E-21 169.5 14.0 190 27-217 2-230 (259)
309 1gsm_A Madcam-1, mucosal addre 99.7 1.3E-15 4.3E-20 152.6 20.3 164 553-719 16-197 (210)
310 3ux9_B SCFV antibody; five hel 99.7 7.1E-16 2.4E-20 163.4 19.7 163 549-714 7-236 (256)
311 3d9a_H Heavy chain of hyhel10 99.7 9.8E-17 3.3E-21 164.4 12.5 165 551-721 7-208 (210)
312 1moe_A Anti-CEA MAB T84.66; an 99.7 3.3E-16 1.1E-20 164.2 16.8 184 29-218 3-220 (240)
313 3bqu_C 3H6 FAB light chain; be 99.7 1.8E-17 6E-22 173.1 7.0 171 544-716 23-224 (233)
314 3qib_D 2B4 beta chain; IG doma 99.7 1.8E-16 6.3E-21 169.4 14.9 172 546-718 29-246 (270)
315 1pz5_B Heavy chain of FAB (SYA 99.7 1.8E-16 6E-21 163.8 14.2 169 551-723 7-217 (220)
316 3juy_B 3B3 single chain varian 99.7 3.2E-16 1.1E-20 166.1 16.6 167 544-715 6-244 (256)
317 1qok_A MFE-23 recombinant anti 99.7 5.1E-16 1.8E-20 167.0 18.2 172 548-726 30-267 (282)
318 3fku_X Neutralizing antibody F 99.7 4.8E-16 1.6E-20 166.9 17.8 183 29-219 3-234 (280)
319 3eow_R Poliovirus receptor; im 99.7 6E-17 2E-21 167.5 10.3 172 550-725 5-210 (221)
320 1ccz_A Protein (CD58); LFA-3, 99.7 1.8E-16 6.1E-21 156.1 12.8 153 35-222 3-161 (171)
321 2gjj_A A21 single-chain antibo 99.7 8.2E-16 2.8E-20 163.5 18.9 186 27-218 5-239 (264)
322 1sy6_A T-cell surface glycopro 99.7 7.4E-17 2.5E-21 164.1 10.1 148 315-473 15-203 (204)
323 1ccz_A Protein (CD58); LFA-3, 99.7 1.7E-16 5.7E-21 156.3 12.2 144 552-724 3-168 (171)
324 1bec_A 14.3.D T cell antigen r 99.7 3.7E-16 1.3E-20 163.5 15.5 192 30-222 2-213 (238)
325 3m8o_H Immunoglobulin A1 heavy 99.7 4.9E-16 1.7E-20 160.6 16.2 187 32-222 5-213 (221)
326 2gjj_A A21 single-chain antibo 99.7 6.9E-16 2.4E-20 164.1 16.9 167 544-713 5-239 (264)
327 1hnf_A CD2; T lymphocyte adhes 99.7 5.4E-16 1.9E-20 153.8 14.6 158 34-223 6-172 (182)
328 2rgs_A I, IG gamma-2B heavy ch 99.7 4.7E-17 1.6E-21 167.8 6.7 174 543-717 8-206 (218)
329 2vol_A Murine IGG FC; FC, zinc 99.7 1E-16 3.5E-21 163.7 9.1 167 548-716 6-197 (207)
330 4dzb_B Vbeta2 (MAIT T cell rec 99.7 5E-16 1.7E-20 163.5 14.5 173 546-718 3-222 (246)
331 3u1s_H FAB PGT145 heavy chain; 99.7 4.1E-16 1.4E-20 166.0 13.7 187 33-222 29-255 (267)
332 3nfj_J T cell receptor beta ch 99.7 8.7E-16 3E-20 161.5 16.1 172 547-718 4-221 (245)
333 1hnf_A CD2; T lymphocyte adhes 99.7 7.6E-16 2.6E-20 152.7 14.7 148 551-724 6-178 (182)
334 1c5d_H Monoclonal antibody aga 99.7 1E-15 3.6E-20 157.3 16.2 183 33-222 6-206 (215)
335 2fbj_H IGA-kappa J539 FAB (hea 99.7 1.4E-15 4.8E-20 156.9 17.2 166 551-718 7-212 (220)
336 2xqy_G A13-D6.3 monoclonal ant 99.7 7.3E-16 2.5E-20 163.2 14.9 187 30-221 9-214 (261)
337 2dru_A Chimera of CD48 antigen 99.7 9.5E-16 3.2E-20 152.3 14.6 145 551-723 6-177 (180)
338 1dee_B IGM RF 2A2; FAB-IBP com 99.6 2.2E-15 7.4E-20 155.9 17.8 169 551-721 7-221 (223)
339 1op3_H FAB 2G12, heavy chain; 99.6 5.3E-16 1.8E-20 160.8 13.0 168 551-721 7-219 (225)
340 3qhz_H Human monoclonal antibo 99.6 1.1E-15 3.8E-20 159.2 15.2 187 33-222 6-219 (232)
341 1x9q_A SCFV, 4M5.3 anti-fluore 99.6 1.1E-15 3.6E-20 163.2 15.4 168 543-713 14-254 (268)
342 3pl6_D MBP peptide / T-cell re 99.6 1.2E-15 4.1E-20 162.9 15.7 172 544-718 26-243 (268)
343 3l5h_A Interleukin-6 receptor 99.6 6.2E-17 2.1E-21 194.3 6.3 285 548-879 7-354 (589)
344 3omz_A Human vdelta1 gamma del 99.6 1.2E-15 4.1E-20 161.9 15.5 166 544-713 2-231 (259)
345 3bae_H WO2 IGG2A FAB fragment 99.6 5.7E-16 1.9E-20 160.9 12.4 169 551-723 7-222 (228)
346 1x9q_A SCFV, 4M5.3 anti-fluore 99.6 1.9E-15 6.4E-20 161.3 16.2 185 28-218 16-254 (268)
347 3n9g_H FAB fragment of MAB CR4 99.6 1.8E-15 6.2E-20 157.3 15.4 187 33-222 6-215 (230)
348 3mtr_A N-CAM-1, NCAM-1, neural 99.6 7E-16 2.4E-20 158.6 12.0 174 543-725 18-207 (215)
349 3nl4_H Antigen binding fragmen 99.6 1.3E-15 4.5E-20 156.6 13.8 183 32-222 4-204 (215)
350 3gkz_A Anti-methamphetamine si 99.6 3.4E-15 1.1E-19 158.3 17.4 169 306-475 11-250 (257)
351 3bn9_D E2 FAB heavy chain; ant 99.6 7.2E-16 2.5E-20 162.5 11.9 187 33-222 6-220 (257)
352 4ei6_B Vbeta16 XV19 type II na 99.6 3.1E-15 1.1E-19 157.3 16.7 171 545-718 3-221 (245)
353 3to4_D NKT vbeta2 (mouse varia 99.6 1.3E-15 4.3E-20 161.1 13.7 190 30-222 4-220 (253)
354 3nl4_H Antigen binding fragmen 99.6 8.9E-16 3E-20 157.9 12.0 170 550-725 5-212 (215)
355 3shs_A HOC head outer capsid p 99.6 3E-14 1E-18 142.3 22.3 228 144-458 13-279 (304)
356 1oga_E TRBC1, T-cell receptor 99.6 1.9E-15 6.3E-20 159.7 14.6 193 28-222 4-219 (252)
357 2rgs_A I, IG gamma-2B heavy ch 99.6 6.6E-16 2.3E-20 159.1 10.8 186 26-222 8-206 (218)
358 1hxm_B Gamma-delta T-cell rece 99.6 3.5E-15 1.2E-19 156.5 16.4 177 545-725 2-227 (242)
359 3q5y_A TCR N15 beta; IG, T cel 99.6 1.9E-15 6.5E-20 158.4 14.3 172 545-718 3-215 (240)
360 2vol_A Murine IGG FC; FC, zinc 99.6 7.2E-16 2.5E-20 157.4 10.6 182 30-222 5-198 (207)
361 3tv3_H PGT128 heavy chain, IG 99.6 9.4E-16 3.2E-20 160.4 11.7 187 33-222 6-227 (239)
362 2d9q_B Granulocyte colony-stim 99.6 2.8E-16 9.5E-21 172.0 8.0 201 636-879 8-254 (313)
363 2d9q_B Granulocyte colony-stim 99.6 2.4E-15 8.3E-20 164.4 15.2 235 551-831 7-312 (313)
364 1dn0_B IGM-kappa cold agglutin 99.6 6.5E-15 2.2E-19 153.2 17.6 174 551-726 7-226 (232)
365 3m8o_H Immunoglobulin A1 heavy 99.6 5.6E-15 1.9E-19 152.6 16.7 158 551-718 7-214 (221)
366 3shs_A HOC head outer capsid p 99.6 2.1E-13 7.3E-18 136.3 26.8 181 311-496 10-206 (304)
367 3knb_A Titin; IG-like, titin, 99.6 2.5E-15 8.7E-20 132.7 11.7 95 628-727 4-99 (100)
368 2gki_A Nuclease; anti-DNA anti 99.6 3.9E-15 1.3E-19 160.7 15.7 161 550-714 28-258 (291)
369 3fku_X Neutralizing antibody F 99.6 3.1E-15 1.1E-19 160.5 14.5 163 547-715 4-235 (280)
370 1i1r_A GP130, interleukin-6 re 99.6 7.2E-15 2.5E-19 159.9 16.6 232 549-827 9-302 (303)
371 3u2s_H PG9 heavy chain; greek 99.6 2.6E-15 9E-20 157.6 12.6 188 32-222 4-228 (248)
372 3iu4_H CHP3 FAB heavy chain; a 99.6 2.4E-15 8.2E-20 159.4 12.2 187 33-222 6-214 (263)
373 2xqy_G A13-D6.3 monoclonal ant 99.6 6E-15 2E-19 156.1 15.3 171 549-723 11-221 (261)
374 2wbj_D OB TCR; transmembrane, 99.6 9.3E-15 3.2E-19 156.9 16.2 174 545-718 25-247 (279)
375 3l5h_A Interleukin-6 receptor 99.6 5.6E-16 1.9E-20 186.0 6.9 443 311-879 11-542 (589)
376 1i1c_A IGG2A, IG gamma-2A chai 99.6 1.3E-15 4.3E-20 159.0 8.3 165 548-717 20-212 (239)
377 3knb_B Obscurin-like protein 1 99.6 7.2E-15 2.5E-19 131.4 11.9 93 628-727 12-105 (107)
378 3liz_H 4C3 monoclonal antibody 99.6 9.6E-15 3.3E-19 154.2 14.7 171 551-725 7-218 (253)
379 3mlr_H Human monoclonal anti-H 99.6 1.1E-14 3.8E-19 150.7 14.8 187 33-222 6-216 (226)
380 2w59_A IGY FCU3-4; immunoglobu 99.6 3.3E-15 1.1E-19 155.3 10.8 172 544-717 12-218 (231)
381 3o3u_N Maltose-binding peripla 99.6 1.1E-14 3.8E-19 174.2 17.0 180 34-222 373-567 (581)
382 3bn9_D E2 FAB heavy chain; ant 99.6 5.3E-15 1.8E-19 155.8 12.3 169 551-723 7-226 (257)
383 1bec_A 14.3.D T cell antigen r 99.6 7.1E-15 2.4E-19 153.7 12.9 169 547-717 2-213 (238)
384 1l6x_A Immunoglobulin gamma-1 99.6 3.5E-15 1.2E-19 152.3 10.1 158 557-716 16-197 (207)
385 1c5d_H Monoclonal antibody aga 99.6 9.9E-15 3.4E-19 149.9 13.4 167 551-723 7-212 (215)
386 1n26_A IL-6 receptor alpha cha 99.6 2.5E-14 8.6E-19 157.1 16.9 232 545-818 7-285 (325)
387 3o3u_N Maltose-binding peripla 99.6 2.1E-14 7.3E-19 171.8 17.5 163 552-718 374-568 (581)
388 3to4_D NKT vbeta2 (mouse varia 99.6 2.7E-14 9.4E-19 150.8 15.8 169 548-716 5-219 (253)
389 2w59_A IGY FCU3-4; immunoglobu 99.6 7.2E-15 2.5E-19 152.7 10.8 183 27-222 12-218 (231)
390 1oga_E TRBC1, T-cell receptor 99.5 4.7E-14 1.6E-18 148.8 16.4 173 545-718 4-220 (252)
391 1ypz_E T cell receptor delta, 99.5 3.7E-14 1.3E-18 144.4 14.8 180 29-221 3-198 (207)
392 1l6x_A Immunoglobulin gamma-1 99.5 1.5E-14 5.2E-19 147.5 11.7 182 28-222 2-198 (207)
393 1iam_A ICAM-1, CD54, intercell 99.5 3.6E-13 1.2E-17 131.7 19.3 162 30-220 2-166 (185)
394 4acp_A IG gamma-1 chain C regi 99.5 1.5E-14 5.2E-19 150.3 10.0 123 592-715 90-217 (240)
395 3tv3_H PGT128 heavy chain, IG 99.5 6.4E-14 2.2E-18 146.4 14.1 172 551-725 7-235 (239)
396 1ypz_F T-cell receptor gamma c 99.5 3.2E-14 1.1E-18 147.7 11.7 167 547-717 4-217 (230)
397 1i1c_A IGG2A, IG gamma-2A chai 99.5 4.5E-14 1.6E-18 147.2 12.8 130 145-277 29-165 (239)
398 1n26_A IL-6 receptor alpha cha 99.5 2.1E-14 7.3E-19 157.7 10.7 196 636-879 14-245 (325)
399 4acp_A IG gamma-1 chain C regi 99.5 5.6E-14 1.9E-18 146.0 11.7 131 145-277 36-172 (240)
400 3bn3_B ICAM-5, intercellular a 99.5 4.6E-13 1.6E-17 131.9 17.4 170 27-220 2-174 (196)
401 3qhz_H Human monoclonal antibo 99.5 7.2E-14 2.5E-18 145.4 12.2 172 552-726 8-228 (232)
402 3knb_B Obscurin-like protein 1 99.5 1.4E-13 4.7E-18 123.0 11.2 98 23-132 9-107 (107)
403 3u2s_H PG9 heavy chain; greek 99.5 1.1E-13 3.9E-18 145.1 12.3 174 550-726 5-237 (248)
404 3n9g_H FAB fragment of MAB CR4 99.5 2.6E-13 8.8E-18 140.9 14.2 172 551-726 7-224 (230)
405 1ow0_A IG alpha-1 chain C regi 99.5 8.5E-15 2.9E-19 150.2 2.7 169 545-716 4-200 (214)
406 2cqv_A MLCK, myosin light chai 99.5 6.3E-13 2.1E-17 120.8 13.5 92 628-726 6-98 (114)
407 2cry_A KIN of IRRE-like protei 99.4 9.9E-15 3.4E-19 134.7 1.2 111 617-727 2-113 (122)
408 2aty_A Complement receptor chi 99.4 4.9E-13 1.7E-17 149.8 13.8 167 549-716 172-362 (376)
409 1ow0_A IG alpha-1 chain C regi 99.4 6.1E-14 2.1E-18 143.8 5.8 180 30-222 7-201 (214)
410 1hxm_A Gamma-delta T-cell rece 99.4 1.1E-12 3.7E-17 135.4 15.2 177 29-220 3-198 (229)
411 3qp3_A Titin; I-SET IG-like, s 99.4 4.8E-13 1.6E-17 119.1 10.6 95 626-727 5-100 (103)
412 1waa_A Titin; metal binding pr 99.4 8E-13 2.7E-17 114.6 11.6 90 25-130 3-92 (93)
413 2aty_A Complement receptor chi 99.4 8E-13 2.7E-17 148.0 14.5 185 30-221 170-362 (376)
414 1g1c_A Immunoglobulin-like dom 99.4 1.1E-12 3.7E-17 115.8 12.4 94 628-727 4-98 (99)
415 1u2h_A APEG-1, aortic preferen 99.4 1.4E-12 4.7E-17 115.1 12.1 94 628-727 4-98 (99)
416 3knb_A Titin; IG-like, titin, 99.4 5.1E-13 1.7E-17 117.8 9.2 85 543-628 4-99 (100)
417 3sob_H Antibody heavy chain, l 99.4 1.2E-12 4E-17 138.3 13.4 172 552-726 31-250 (256)
418 3mlr_H Human monoclonal anti-H 99.4 9E-13 3.1E-17 136.3 12.1 169 552-724 8-223 (226)
419 1wit_A Twitchin 18TH IGSF modu 99.4 1.1E-12 3.9E-17 114.1 10.4 89 629-726 2-93 (93)
420 2kdg_A Myotilin; immonoglobuli 99.4 1.5E-12 5.1E-17 115.1 11.3 94 628-727 4-98 (100)
421 3puc_A Titin; I-SET IG-like do 99.4 2E-12 6.8E-17 114.1 12.0 92 628-726 5-97 (99)
422 1wwb_X Protein (brain derived 99.4 1.7E-12 5.9E-17 115.2 11.6 97 626-728 1-99 (103)
423 3irg_A Titin; IG-like, titin, 99.4 1.8E-12 6.3E-17 114.5 11.7 93 629-726 5-98 (100)
424 1ypz_E T cell receptor delta, 99.4 2.8E-12 9.5E-17 130.5 14.2 160 547-717 4-199 (207)
425 2yuz_A Myosin-binding protein 99.4 1.8E-12 6E-17 114.3 10.6 95 24-133 4-98 (100)
426 3iu4_H CHP3 FAB heavy chain; a 99.4 1.2E-12 4.2E-17 138.5 11.2 169 553-725 9-222 (263)
427 1iam_A ICAM-1, CD54, intercell 99.4 1.4E-11 4.8E-16 120.4 17.6 156 548-716 3-167 (185)
428 3irg_B Obscurin-like protein 1 99.4 2.9E-12 1E-16 114.9 11.6 95 626-727 10-105 (107)
429 2edj_A Roundabout homolog 2; K 99.4 2.4E-12 8.2E-17 113.8 10.8 92 627-727 6-98 (100)
430 3kvq_A Vascular endothelial gr 99.4 1.1E-12 3.8E-17 117.9 8.7 98 621-727 2-100 (108)
431 2e7c_A Myosin-binding protein 99.4 4.4E-12 1.5E-16 116.0 12.3 94 626-727 18-115 (118)
432 2kkq_A Myotilin; unknown funct 99.3 3.9E-12 1.3E-16 115.7 11.4 96 627-727 13-109 (116)
433 1he7_A High affinity nerve gro 99.3 6E-12 2.1E-16 114.0 11.9 94 628-727 3-99 (126)
434 2yr3_A Myosin light chain kina 99.3 2.1E-12 7.3E-17 113.9 8.4 90 626-725 8-98 (99)
435 2dm2_A Palladin; beta-sandwich 99.3 3.4E-12 1.2E-16 115.1 9.8 95 628-727 7-102 (110)
436 2lu7_A Obscurin-like protein 1 99.3 2.4E-12 8.1E-17 108.9 8.1 83 33-131 2-84 (84)
437 2bk8_A Connectin, M1, titin he 99.3 1.4E-11 4.8E-16 108.1 13.4 87 634-727 7-94 (97)
438 2q7n_A Leukemia inhibitory fac 99.3 1.3E-12 4.5E-17 149.0 8.6 206 618-878 192-430 (488)
439 3f8u_B Tapasin; endoplasmic re 99.3 2E-11 6.9E-16 133.0 17.3 192 33-229 164-399 (401)
440 1wwc_A Protein (NT-3 growth fa 99.3 5.3E-12 1.8E-16 115.4 10.9 101 622-727 1-101 (118)
441 1fhg_A Telokin; immunoglobulin 99.3 5.5E-12 1.9E-16 121.5 11.2 101 621-727 33-134 (154)
442 1nct_A Titin; cell adhesion, g 99.3 2.2E-12 7.4E-17 115.3 7.7 92 628-726 13-105 (106)
443 2cqv_A MLCK, myosin light chai 99.3 1.2E-11 4.3E-16 112.1 13.0 100 25-136 5-105 (114)
444 2dav_A SLOW MYBP-C, myosin-bin 99.3 5.3E-12 1.8E-16 114.5 10.1 103 28-137 8-119 (126)
445 1gxe_A Myosin binding protein 99.3 3.4E-12 1.2E-16 119.5 9.1 86 635-726 25-138 (139)
446 2kkq_A Myotilin; unknown funct 99.3 4.1E-12 1.4E-16 115.6 9.3 95 538-633 9-114 (116)
447 2yuz_A Myosin-binding protein 99.3 7.1E-12 2.4E-16 110.4 10.2 90 628-728 6-96 (100)
448 2lvc_A Obscurin-like protein 1 99.3 6.6E-12 2.2E-16 108.0 9.6 86 27-128 4-91 (91)
449 2ckn_A Basic fibroblast growth 99.3 6.4E-12 2.2E-16 109.8 9.7 86 628-725 8-94 (95)
450 2dm2_A Palladin; beta-sandwich 99.3 9.9E-12 3.4E-16 112.0 11.3 103 23-135 4-107 (110)
451 2edj_A Roundabout homolog 2; K 99.3 8.3E-12 2.8E-16 110.3 10.1 87 543-630 7-100 (100)
452 1waa_A Titin; metal binding pr 99.3 1.4E-11 4.8E-16 106.7 11.1 87 628-726 4-91 (93)
453 2lu7_A Obscurin-like protein 1 99.3 7.7E-12 2.6E-16 105.7 9.2 80 636-727 4-83 (84)
454 2eo9_A Roundabout homolog 1; b 99.3 1.4E-11 4.9E-16 112.6 11.7 112 24-149 5-117 (118)
455 1x44_A Myosin-binding protein 99.3 1.8E-11 6.3E-16 108.7 12.1 95 26-134 6-100 (103)
456 3cx2_A Myosin-binding protein 99.3 2.3E-11 7.9E-16 109.1 12.7 96 630-726 5-107 (108)
457 3f8u_B Tapasin; endoplasmic re 99.3 3.8E-11 1.3E-15 130.9 16.8 172 550-723 164-400 (401)
458 2dm3_A KIAA0992 protein, palla 99.3 4.5E-12 1.5E-16 114.3 8.0 93 628-726 8-101 (110)
459 3kvq_A Vascular endothelial gr 99.3 5.1E-12 1.7E-16 113.5 8.3 94 537-631 3-103 (108)
460 1zxq_A ICAM-2, intercellular a 99.3 1.3E-10 4.5E-15 113.0 18.4 168 27-219 2-172 (192)
461 2eny_A Obscurin; beta-sandwich 99.3 1E-11 3.5E-16 110.4 9.8 94 24-133 5-100 (104)
462 2kdg_A Myotilin; immonoglobuli 99.3 1E-11 3.4E-16 109.8 9.6 88 542-630 3-100 (100)
463 1wit_A Twitchin 18TH IGSF modu 99.3 1.2E-11 4E-16 107.6 9.4 83 544-627 2-93 (93)
464 2edf_A Obscurin; beta-sandwich 99.3 1.5E-11 5.3E-16 109.2 10.1 97 23-135 4-100 (103)
465 2eo9_A Roundabout homolog 1; b 99.3 6.2E-12 2.1E-16 115.0 7.6 101 543-644 7-117 (118)
466 2edn_A Myosin-binding protein 99.3 1.8E-11 6E-16 109.8 10.1 98 26-131 11-117 (118)
467 2dav_A SLOW MYBP-C, myosin-bin 99.3 1.6E-11 5.6E-16 111.3 9.8 83 545-628 8-111 (126)
468 2lvc_A Obscurin-like protein 1 99.3 1.2E-11 4.3E-16 106.3 8.6 86 628-725 3-91 (91)
469 3qp3_A Titin; I-SET IG-like, s 99.3 7E-12 2.4E-16 111.4 7.3 89 541-630 5-102 (103)
470 2q7n_A Leukemia inhibitory fac 99.3 1.6E-11 5.3E-16 140.1 11.9 212 540-800 199-427 (488)
471 1g1c_A Immunoglobulin-like dom 99.2 2E-11 6.9E-16 107.5 10.0 85 543-628 4-98 (99)
472 2e6q_A Obscurin-like protein 1 99.2 6.6E-11 2.2E-15 105.4 13.0 98 26-133 7-108 (112)
473 3caf_A Fibroblast growth facto 99.2 2.2E-11 7.6E-16 107.5 10.0 91 628-725 3-99 (100)
474 3u1s_H FAB PGT145 heavy chain; 99.2 4.5E-11 1.5E-15 126.9 13.6 171 552-725 31-263 (267)
475 3d85_D IL-12B, interleukin-12 99.2 1.5E-11 5.1E-16 132.6 9.8 221 555-818 17-298 (306)
476 3bn3_B ICAM-5, intercellular a 99.2 8.6E-11 3E-15 115.7 14.3 164 546-715 4-174 (196)
477 2edn_A Myosin-binding protein 99.2 2.1E-11 7.1E-16 109.3 8.8 93 634-727 18-116 (118)
478 3irg_B Obscurin-like protein 1 99.2 2.3E-11 7.8E-16 109.0 9.2 89 541-630 10-107 (107)
479 3bfo_A Mucosa-associated lymph 99.2 2.1E-11 7.2E-16 105.5 8.6 85 544-628 3-87 (91)
480 1fhg_A Telokin; immunoglobulin 99.2 1.5E-11 5.1E-16 118.4 8.0 100 534-634 31-140 (154)
481 1u2h_A APEG-1, aortic preferen 99.2 3.5E-11 1.2E-15 106.0 9.7 85 543-628 4-98 (99)
482 2dm3_A KIAA0992 protein, palla 99.2 2.8E-11 9.4E-16 109.0 8.9 101 24-135 6-107 (110)
483 2yr3_A Myosin light chain kina 99.2 1.2E-11 4.1E-16 109.0 6.4 87 540-627 7-99 (99)
484 1hxm_A Gamma-delta T-cell rece 99.2 1.2E-10 4.2E-15 119.9 14.9 159 547-715 4-198 (229)
485 2e7c_A Myosin-binding protein 99.2 4E-11 1.4E-15 109.5 9.5 89 541-630 18-117 (118)
486 2edk_A Myosin-binding protein 99.2 2.8E-11 9.6E-16 107.0 8.1 97 24-132 5-101 (101)
487 3cx2_A Myosin-binding protein 99.2 5.7E-11 1.9E-15 106.5 9.8 83 544-627 4-107 (108)
488 3puc_A Titin; I-SET IG-like do 99.2 1.5E-10 5E-15 101.9 12.3 93 25-129 4-97 (99)
489 2dku_A KIAA1556 protein; beta- 99.2 1.2E-10 4.1E-15 103.4 11.8 96 24-135 5-100 (103)
490 1wwb_X Protein (brain derived 99.2 4.7E-11 1.6E-15 105.9 8.8 87 542-632 2-102 (103)
491 2yuv_A Myosin-binding protein 99.2 1.4E-10 4.8E-15 102.2 11.7 92 25-132 5-97 (100)
492 2cr3_A Basic fibroblast growth 99.2 4.6E-11 1.6E-15 105.1 8.2 80 636-727 11-90 (99)
493 2dm7_A KIAA1556 protein; beta- 99.2 1.2E-10 4.1E-15 104.4 10.8 92 24-132 5-96 (108)
494 4hwu_A Fibroblast growth facto 99.2 9.9E-11 3.4E-15 102.1 10.0 82 634-728 7-88 (95)
495 2ens_A Advanced glycosylation 99.2 1.7E-11 5.9E-16 107.2 5.1 85 544-628 10-95 (96)
496 2edh_A Obscurin; structural ge 99.2 1E-10 3.4E-15 105.9 10.3 101 615-728 4-106 (113)
497 3bfo_A Mucosa-associated lymph 99.2 5.2E-11 1.8E-15 103.0 7.8 85 390-474 3-87 (91)
498 2cr6_A KIAA1556 protein, obscu 99.2 3.1E-11 1.1E-15 109.7 6.4 98 621-728 4-103 (115)
499 1x44_A Myosin-binding protein 99.1 1.1E-10 3.7E-15 103.6 9.6 87 630-726 8-95 (103)
500 2ens_A Advanced glycosylation 99.1 4.3E-11 1.5E-15 104.7 6.7 85 390-474 10-95 (96)
No 1
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.6e-65 Score=614.19 Aligned_cols=537 Identities=21% Similarity=0.341 Sum_probs=428.6
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
..+|.|...++++.+.+|++++|.|.+.+ +.+.+.|+|++..+. ...++.+... .+..+|.|.+++.+|+|
T Consensus 3 ~~pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~------~~~~~~~~~~--~~~~~L~I~~v~~~D~G 74 (570)
T 3b43_A 3 MEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLR------SAPAYKMQFK--NNVASLVINKVDHSDVG 74 (570)
T ss_dssp CCCCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCC------CCSSEEEECC--TTEEEEEESSCCGGGCE
T ss_pred CCCCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEcc------CCCCEEEEEE--CCEEEEEEccCChhhCE
Confidence 35799999999999999999999999997 678999999997763 2345555432 35678999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
.|+|.|.|.. +.....+.|.|.....+|.+.. ...+.+.+|+.+.|.|. +.|.|+++++|+||+..+..+.++.
T Consensus 75 ~Y~C~a~N~~----g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~-~~g~p~~~v~W~k~g~~l~~~~~~~ 149 (570)
T 3b43_A 75 EYTCKAENSV----GAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECR-INGSEPLQVSWYKDGELLKDDANLQ 149 (570)
T ss_dssp EEEEEEEETT----EEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEE-EESSSSCEEEEEETTEECCCCSSEE
T ss_pred EEEEEEEeCC----ceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEE-EccCCCCEEEEEECCEECcCCCCEE
Confidence 9999999863 3345556677766555555543 34567788999999999 6788999999999998876544433
Q ss_pred EeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEccc
Q psy17146 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEA 262 (1011)
Q Consensus 183 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~ 262 (1011)
...... ..+|.|.++..+|+|.|+|.|.|..|....+..+.|.....|......+
T Consensus 150 ~~~~~~------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p------------------- 204 (570)
T 3b43_A 150 TSFIHN------VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKP------------------- 204 (570)
T ss_dssp EEEETT------EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECC-------------------
T ss_pred EEEECC------EEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCC-------------------
Confidence 222211 3689999999999999999999998877555555554332222211111
Q ss_pred CCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECC
Q psy17146 263 NPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIND 342 (1011)
Q Consensus 263 ~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g 342 (1011)
.+..+.+|+.++|.|.+.+.|.+ .++|+|+|
T Consensus 205 ------------------------------------------------~~~~v~~G~~~~l~C~~~g~p~p-~i~W~k~g 235 (570)
T 3b43_A 205 ------------------------------------------------VSVDLALGESGTFKCHVTGTAPI-KITWAKDN 235 (570)
T ss_dssp ------------------------------------------------CCBCCBSBSCEEEEEEEESSSCC-EEEEEETT
T ss_pred ------------------------------------------------ceeEecCCCeEEEEEEEEECCCC-EEEEEECC
Confidence 22345677777777777777665 78888887
Q ss_pred eecCCCc--------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCC-ceEecCCCcEEEEee
Q psy17146 343 QPVPAAA--------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPY-SVQVDRGAGVNLLCD 413 (1011)
Q Consensus 343 ~~l~~~~--------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~-~~~v~~G~~v~l~C~ 413 (1011)
..+..+. ....|.|.++..+ |+|.|+|.|.|..|..+.++.|.|..+|.+...+. ...+.+|+.+.|.|.
T Consensus 236 ~~i~~~~~~~~~~~~~~~~L~i~~v~~~-D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~ 314 (570)
T 3b43_A 236 REIRPGGNYKMTLVENTATLTVLKVTKG-DAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 314 (570)
T ss_dssp EECCTTSSEEEEEETTEEEEEESSBCGG-GCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEE
T ss_pred EECcCCCcEEEEEECCEEEEEEcccCcc-cCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEE
Confidence 7765432 2468999999998 99999999999999999999999999999876554 346889999999999
Q ss_pred cCCCCCCceEEEeCCCcee---------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcc
Q psy17146 414 VDGNPAPEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQ 484 (1011)
Q Consensus 414 ~~g~p~p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~ 484 (1011)
+.|.|.+.+.|+|++..+. ......|.|.+++.+|+|.|+|.|.|
T Consensus 315 ~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N-------------------------- 368 (570)
T 3b43_A 315 IGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN-------------------------- 368 (570)
T ss_dssp EESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEB--------------------------
T ss_pred EeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEe--------------------------
Confidence 9999999999999985432 22345699999999999999999984
Q ss_pred cccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEE
Q psy17146 485 FGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNL 564 (1011)
Q Consensus 485 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l 564 (1011)
..|....++.|.|..+|.|...|.+..+.+|+.+.|
T Consensus 369 --------------------------------------------~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l 404 (570)
T 3b43_A 369 --------------------------------------------AAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHL 404 (570)
T ss_dssp --------------------------------------------TTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEE
T ss_pred --------------------------------------------CCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEE
Confidence 455566667778888999998899999999999999
Q ss_pred EEEEecCCCCeEEEEecCCceeec---------CCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeec-
Q psy17146 565 LCDVDGNPAPEITWIHEDSDKVVG---------NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS- 634 (1011)
Q Consensus 565 ~C~~~g~p~p~v~W~k~~~~~~~~---------~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~- 634 (1011)
.|.+.|.|.|.+.|+|++..+... ...+|.|.++..+|+|.|+|.|.| ..|..+..+.|.|..+|.|..
T Consensus 405 ~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N-~~G~~~~~~~l~v~~~P~~~~~ 483 (570)
T 3b43_A 405 ECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASN-DVGSDTCVGSITLKAPPRFVKK 483 (570)
T ss_dssp EEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEC-SSCEEEEEEEEEECCCCEEEEC
T ss_pred EEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEE-CCCeEEEEEEEEeccCCccccc
Confidence 999999999999999998543211 125799999999999999999999 678888999999999999884
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
+.+..+.+|+.++|.|.+.|.|.| .|.|+|+|..+.. ...++.+.. .+..++|.|.++..+|+|.|+|.|.|.+
T Consensus 484 ~~~~~~~~g~~~~l~c~~~g~p~~-~v~W~k~~~~~~~-~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~ 557 (570)
T 3b43_A 484 LSDISTVVGEEVQLQATIEGAEPI-SVAWFKDKGEIVR-ESDNIWISY----SENIATLQFSRAEPANAGKYTCQIKNEA 557 (570)
T ss_dssp CCCBCCBTTCCEEEEEEEESCSSC-CCEEEETTEECCC-CTTTEEECC----CSSEEEEEESSCCTTCCEEEEEEEECSS
T ss_pred CCCceecCCCeEEEEEEEecCCCC-EEEEEeCCeEecc-CCCeEEEEE----CCCEEEEEECcCCHHHCEEEEEEEEECC
Confidence 456778999999999999999999 9999999876643 344555543 2346799999999999999999999999
Q ss_pred CCeEEEEEEEec
Q psy17146 715 GSDSVEIMLKPQ 726 (1011)
Q Consensus 715 G~~~~~~~l~V~ 726 (1011)
|.++.++.|.|.
T Consensus 558 G~~~~~a~L~V~ 569 (570)
T 3b43_A 558 GTQECFATLSVL 569 (570)
T ss_dssp CEEEEEEEECCB
T ss_pred cEEEEEEEEEEe
Confidence 999999999874
No 2
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=6e-64 Score=628.96 Aligned_cols=662 Identities=19% Similarity=0.301 Sum_probs=499.6
Q ss_pred eccceeecCCc-eeEEecCcEEEEEEEcC-CCCeeEEee-CCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCC-
Q psy17146 26 REQKFAMEPQD-QTAVVGSRVTLPCRVID-KTGVLQWTK-DDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD- 101 (1011)
Q Consensus 26 ~~p~~~~~p~~-~~v~~G~~v~L~C~v~~-~~~~v~W~k-~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D- 101 (1011)
.+|.|..+|.+ +.+.+|++++|.|.+.+ +.+.+.|+| ||..+.... ....+.. ..+|.|.+++.+|
T Consensus 37 ~~P~~~~~p~~~~~~~~g~~~~l~C~a~g~p~p~~~W~k~~g~~~~~~~-----~~~~~~~-----~g~l~i~~~~~~~~ 106 (816)
T 3dmk_A 37 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP-----GLRQISS-----DGKLVFPPFRAEDY 106 (816)
T ss_dssp EEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBT-----TTBEECS-----TTEEEECCCCGGGC
T ss_pred CCCcEEeCCCCeEEEECCCCeEEEeeecCCCCCEEEEEeCCCCCccCCC-----ceEEEee-----CCcEEEcCCChHHc
Confidence 45999999987 56888999999999996 788999999 776663211 1122221 2379999999887
Q ss_pred -----CceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC--cEEEEEeCCce
Q psy17146 102 -----DARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP--AEITWIDGTGT 174 (1011)
Q Consensus 102 -----~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W~k~~~~ 174 (1011)
+|.|+|.|.|..+ ...|..+.|.+...+.. ......+.+.+|+.+.|.|.+..+.|. +.+.|+|++..
T Consensus 107 ~~~~d~G~Y~C~a~n~~G---~~~S~~~~v~~~~~~~~--~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~ 181 (816)
T 3dmk_A 107 RQEVHAQVYACLARNQFG---SIISRDVHVRAVVAQYY--EADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEE 181 (816)
T ss_dssp CHHHHEEEEEEEEEETTE---EEEEEEEEEEEECCCCC--CCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSC
T ss_pred cccccceEEEEEEecCcc---eEEccceEEEEEEcccc--EEEEecceEecCceEEEEECCCccccccEEEEEEEecCce
Confidence 8999999998642 22366677776654432 223345678899999999984333333 68999998876
Q ss_pred eeeceeEEEeeecCCceE-EEEEEEEEeeccCcCC-cEEEEEEEeCCCCceeE--EEEEEEEEeC-----CceEEEe-cC
Q psy17146 175 VMSNVRVTEEASVDGRRT-TVKSTLVLTPKKEHHN-TTFTCQAQNTADRTYKV--ARLKLLVKYA-----PKVQVSV-IG 244 (1011)
Q Consensus 175 l~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~d~-G~Y~C~a~n~~g~~~~s--~~v~v~v~~~-----P~~~~~~-~~ 244 (1011)
+.... ...++|.. ...+.|.|.+++.+|+ |.|+|.+.|..+..... ....+.+..+ |.+.... ..
T Consensus 182 ~~~~~-----~~~~~r~~~~~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~ 256 (816)
T 3dmk_A 182 NYFPG-----AEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFD 256 (816)
T ss_dssp EECBS-----SCBTTTEEECTTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEE
T ss_pred Eeccc-----cCCCceEEEecCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCccccccCcc
Confidence 64210 00112211 1123799999999999 99999999865543211 1123444332 3221100 02
Q ss_pred cceeecCceEEEEEEcccCCCccEEEEEeCCcccCC------cc----ccceEEEEeeecccCCcEEEEEEE--------
Q psy17146 245 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA------AA----SATELYLTNITRHQHDSIVKCEVQ-------- 306 (1011)
Q Consensus 245 ~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~------~~----~~~~l~i~~~~~~~~~~~~~c~~~-------- 306 (1011)
...+.+|+.++|.|.+.+.+. +.+.|++++..... .. ..+.|.|.++.. +|.|.|.|.+.
T Consensus 257 ~~~v~~g~~v~L~C~~~g~p~-p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~~ 334 (816)
T 3dmk_A 257 MKTYSGSSTMALLCPAQGYPV-PVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV-EDSGKYLCVVNNSVGGESV 334 (816)
T ss_dssp EEEECTTSCEEECCCCBCSSC-CEEEEEEECTTSSCEEECCCSSSEEEETTEEEECSCCG-GGCEEEEEEEECSSCEEEE
T ss_pred ceEEeCCCeEEEEEEeeecCC-CeEEEEeCCCCCccCcceecCCceEeccceEEECCCCH-hHCEEEEEEEEcCCCceEE
Confidence 246789999999999998765 79999996543221 11 234566666654 55789999864
Q ss_pred ---EEe---------eCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEc
Q psy17146 307 ---VSV---------IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHN 374 (1011)
Q Consensus 307 ---~~~---------~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n 374 (1011)
+.+ .....+.+|+.++|.|.+.+.|.+ .+.|+|+|..+.. ....|.|.+++.+ |+|.|+|.|.|
T Consensus 335 ~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~~~~--~~~~L~i~~v~~~-d~G~Y~C~a~n 410 (816)
T 3dmk_A 335 ETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK-TVSWMKDGKAIGH--SESVLRIESVKKE-DKGMYQCFVRN 410 (816)
T ss_dssp EEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCC-EEEEEETTEECSC--CSSEEEESSCCGG-GCEEEEEEEEC
T ss_pred EEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCC-EEEEEECCEECCC--CCCEEEEcCCCHH-HCEEEEEEEEC
Confidence 111 134568899999999999999886 9999999999865 3568999999998 99999999999
Q ss_pred CCccceeeEEEEEE---ecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceeec----------cC----C
Q psy17146 375 DVGKSEDSETLDVT---YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG----------NS----P 437 (1011)
Q Consensus 375 ~~g~~~~s~~l~V~---~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~----------~~----~ 437 (1011)
..|....++.|.|. .+|.+...+.+..+.+|+.+.|.|.+.|+|.+.+.|++++..+... .. .
T Consensus 411 ~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~ 490 (816)
T 3dmk_A 411 DRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVS 490 (816)
T ss_dssp SSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEE
T ss_pred CCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEE
Confidence 99988888888874 4778888788889999999999999999999999999987543211 11 2
Q ss_pred cEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEee
Q psy17146 438 NLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG 517 (1011)
Q Consensus 438 ~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~ 517 (1011)
.|.|.+++.+|+|.|+|.|.|.. +.....+.|.|..+|.+.......+.+|+.+.|.|.+.+.|.+ .+.|+|++..+.
T Consensus 491 ~L~i~~v~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~-~i~W~k~~~~l~ 568 (816)
T 3dmk_A 491 YLNITSVHANDGGLYKCIAKSKV-GVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPID-SIVWERDNRALP 568 (816)
T ss_dssp EEEESSCCTTTCEEEEEEEEETT-EEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEE-EEEEEETTEESC
T ss_pred EEEEeeccccCCEEEEEEEEECC-CeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCC-EEEEEECCeEcc
Confidence 48999999999999999999964 3456778888988888877777788899999999999988766 999999998652
Q ss_pred --------------------ccCCCceEE--EcCCCCC-cccEEEEEEecceeecC-CceEEEcCCCcEEEEEEEecCCC
Q psy17146 518 --------------------VGSSDDYSV--HNDVGKS-EDSETLDVTYGPRFRAR-PYSVQVDRGAGVNLLCDVDGNPA 573 (1011)
Q Consensus 518 --------------------~~~~~~y~~--~n~~G~~-~~~~~l~V~~~P~~~~~-p~~~~v~~G~~~~l~C~~~g~p~ 573 (1011)
..+.|.|+| .|..|.. .....+.|..+|.+... +....+.+|+.++|.|.+.+.+.
T Consensus 569 ~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~ 648 (816)
T 3dmk_A 569 INRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDL 648 (816)
T ss_dssp CSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSS
T ss_pred cCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCC
Confidence 246788886 6777753 44667778888876543 45667899999999999987766
Q ss_pred C-eEEEEecCCceee----------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee-cCCceeee
Q psy17146 574 P-EITWIHEDSDKVV----------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII-SHRTQFGI 641 (1011)
Q Consensus 574 p-~v~W~k~~~~~~~----------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~ 641 (1011)
+ .+.|+++|..+.. ...+.|+|.++..+|+|.|+|.|.| ..|..+..+.|.|..+|.+. .+....+.
T Consensus 649 ~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~l~V~~~P~~~~~~~~~~v~ 727 (816)
T 3dmk_A 649 PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARN-LAGHQQFTTPLNVYVPPRWILEPTDKAFA 727 (816)
T ss_dssp CCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEEC-SSCEEEEEEEECEEEEEEEEECCCCEEEE
T ss_pred CCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEe-CCccEEEEEEEEEEeCCceeeecccceec
Confidence 5 9999999865421 2346799999999999999999999 67888889999999999987 45677889
Q ss_pred cCCcEEEEEEEEecCCCCeEEEEECCeEeccc-----CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 642 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVG-----SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 642 ~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
+|+.++|.|.+.|.|.| .|+|+|++..+... ...++.+. .++|.|.+++.+|+|.|+|.|.|.+|+
T Consensus 728 ~G~~v~l~C~~~g~P~p-~i~W~k~~~~~~~~~~~~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 798 (816)
T 3dmk_A 728 QGSDAKVECKADGFPKP-QVTWKKAVGDTPGEYKDLKKSDNIRVE--------EGTLHVDNIQKTNEGYYLCEAINGIGS 798 (816)
T ss_dssp TTCCEEEECEEEEESCC-EEECCEECSSSTTCCBCCCCBTTEEEE--------TTEEEECSCCGGGCEEEEEEEECSSSS
T ss_pred CCCcEEEEEEEecCCCC-eEEEEecCCCCCccccccccCCCEEec--------CCEEEECcCChhhCeEEEEEEEeCCCC
Confidence 99999999999999999 99999987654321 11222221 258999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy17146 717 DSVEIMLKP 725 (1011)
Q Consensus 717 ~~~~~~l~V 725 (1011)
+..++.+..
T Consensus 799 ~~~~v~~~~ 807 (816)
T 3dmk_A 799 GLSAVIMIS 807 (816)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 999888764
No 3
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=1.6e-61 Score=589.87 Aligned_cols=583 Identities=20% Similarity=0.282 Sum_probs=447.5
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCccc-------------CCCCcceEEeecCCCceeEEEEe
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRN-------------LSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~-------------~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
|+++|.++.+.+|++|+|.|...+ +...+.|+|++........ ....+|..+.. +++|+|.
T Consensus 2 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~~-----~~sL~I~ 76 (642)
T 1e07_A 2 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYP-----NASLLIQ 76 (642)
T ss_pred ceEeccCCcccccccEEEEEccCCCCceEEEEECCcccCCcceEEEEEccccccccCccccCceeecc-----CCcEEEC
Confidence 678899999999999999999765 4458999995432211000 00123444432 3489999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCcee
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTV 175 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l 175 (1011)
+++.+|+|.|+|.+.+... ...+..+.|.|...+..|.|.......+.+|+.+.|.|. +.+ |.+.++|+|++..+
T Consensus 77 ~v~~~D~G~Y~C~~~~~~~---~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~g~~v~l~C~-~~~-p~~~v~W~~~g~~l 151 (642)
T 1e07_A 77 NIIQNDTGFYTLHVIKSDL---VNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCE-PET-QDATYLWWVNNQSL 151 (642)
T ss_pred CCCcccCcEEEEEEEcCCC---eEEEEEEEEEecccCCCCcEEccCceeEecCCcEEEEEE-CCC-CCeeEEEEECCeEC
Confidence 9999999999999987532 224566788998877778887666667889999999999 556 89999999999888
Q ss_pred eeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEE
Q psy17146 176 MSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVR 255 (1011)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~ 255 (1011)
..+.++.... + .+.|.|.+++.+|+|.|+|.|.|..+.. .+..+.|.|...|......+
T Consensus 152 ~~~~~~~~~~--~------~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~p~~~~~~~------------ 210 (642)
T 1e07_A 152 PVSPRLQLSN--G------NRTLTLFNVTRNDTASYKCETQNPVSAR-RSDSVILNVLYGPDAPTISP------------ 210 (642)
T ss_pred CCCCceEEcC--C------CCEEEEeCCCcccCeeEEEEEecCCCCc-ccceEEEEEEeCCCCcEEec------------
Confidence 6655443221 1 2489999999999999999999988764 35667777776554322111
Q ss_pred EEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccE
Q psy17146 256 LYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMK 335 (1011)
Q Consensus 256 L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~ 335 (1011)
.+..+.+|+.++|.|.+.+.|.+ .
T Consensus 211 -------------------------------------------------------~~~~~~~G~~~~l~C~~~g~p~~-~ 234 (642)
T 1e07_A 211 -------------------------------------------------------LNTSYRSGENLNLSCHAASNPPA-Q 234 (642)
T ss_pred -------------------------------------------------------CCcccccCCEEEEEEEcCCCCCc-E
Confidence 22346778888888888777776 9
Q ss_pred EEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCcccee--eEEEEEEec---ceEeeCCCceEecCCCcEEE
Q psy17146 336 YRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSED--SETLDVTYG---PRFRARPYSVQVDRGAGVNL 410 (1011)
Q Consensus 336 i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~--s~~l~V~~~---P~~~~~p~~~~v~~G~~v~l 410 (1011)
+.|+++|..+. ....|.|.++..+ |+|.|+|.|.|..|.... .+.|.|..+ |.+. .+....+..|+.+.|
T Consensus 235 i~W~~~g~~i~---~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~-~~~~~~~~~g~~v~l 309 (642)
T 1e07_A 235 YSWFVNGTFQQ---STQELFIPNITVN-NSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFIT-SNNSNPVEDEDAVAL 309 (642)
T ss_pred EEEEECCeEcc---cCCceEEeccccc-CCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEE-cCCceeEecCCcEEE
Confidence 99999998884 3567999999998 999999999999887643 456666653 3333 233445666888999
Q ss_pred EeecCCCCCCceEEEeCCCcee-------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCee--ecc
Q psy17146 411 LCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI--ISH 481 (1011)
Q Consensus 411 ~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~--~~~ 481 (1011)
.|.+.+.| +.+.|+|++..+. ......|.|.++..+|+|.|+|.|.|..+...+..+.|.|..+|.. ..+
T Consensus 310 ~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~ 388 (642)
T 1e07_A 310 TCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISP 388 (642)
T ss_pred EEECCCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecC
Confidence 99999887 7999999986532 2345789999999999999999999977666667778888766543 233
Q ss_pred CcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEee-----------ccCCCceEE--EcCCCCCcccEEE--EEEe---
Q psy17146 482 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG-----------VGSSDDYSV--HNDVGKSEDSETL--DVTY--- 543 (1011)
Q Consensus 482 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~-----------~~~~~~y~~--~n~~G~~~~~~~l--~V~~--- 543 (1011)
....+.+|+.+.|.|.+.+.|.+ .+.|+++|..+. ..+.|.|+| .|..|....+..+ .|..
T Consensus 389 ~~~~~~~g~~~~l~C~~~g~p~~-~i~W~~~g~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~ 467 (642)
T 1e07_A 389 SYTYYRPGVNLSLSCHAASNPPA-QYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELP 467 (642)
T ss_pred CceEecCCCcEEEEEEcCccCCC-eEEEEECCEEcCCCceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCC
Confidence 45567899999999999988877 999999998763 346788886 6888877766544 4443
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEecCCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGFP 616 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 616 (1011)
+|.+.. +.+..+.+|+.++|.|.+.+ |.+.+.|+|++..+. ..++++|+|.++..+|+|.|+|.|.|..+.
T Consensus 468 ~p~i~~-~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 545 (642)
T 1e07_A 468 KPSISS-NNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSA 545 (642)
T ss_pred CceEec-CCceeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCC
Confidence 344433 45677889999999999994 889999999986542 233579999999999999999999994333
Q ss_pred ceeeEEEEEEcCCCe-ee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEE
Q psy17146 617 EVGAEATVYLKGRPT-II-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLI 694 (1011)
Q Consensus 617 ~~s~~~~l~V~~~P~-i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~ 694 (1011)
..+..+.|.|..+|. +. .+....+.+|+.++|.|.+.|.|.| .|+|+|||..+.. ...|.
T Consensus 546 ~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~v~W~~~g~~i~~-----------------~~~L~ 607 (642)
T 1e07_A 546 NRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSP-QYSWRINGIPQQH-----------------TQVLF 607 (642)
T ss_pred ccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCC-eEEEEECCEECcc-----------------CceEE
Confidence 345578899986654 33 4567789999999999999999999 9999999998752 14799
Q ss_pred EcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 695 IRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 695 I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|.++..+|+|.|+|.|.|.+|.++.++.|.|.
T Consensus 608 i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~ 639 (642)
T 1e07_A 608 IAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639 (642)
T ss_pred ECcccccCCeEEEEEEEecccCcceeEEEEEE
Confidence 99999999999999999999999888887764
No 4
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-56 Score=560.23 Aligned_cols=582 Identities=19% Similarity=0.319 Sum_probs=452.2
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCC--C--CeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDK--T--GVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~--~--~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
.+.|...+.++.+.+|++++|.|.+... . +.+.|++++..+... .....+|+.+..++ +|.|.+++.+|+
T Consensus 138 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~r~~~~~~g-----~L~I~~v~~~D~ 211 (816)
T 3dmk_A 138 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFP-GAEYDGKYLVLPSG-----ELHIREVGPEDG 211 (816)
T ss_dssp CCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSCEECB-SSCBTTTEEECTTS-----CEEESSCCGGGS
T ss_pred ccccEEEEecceEecCceEEEEECCCccccccEEEEEEEecCceEecc-ccCCCceEEEecCc-----eEEEecCChhhc
Confidence 4556677888999999999999998642 2 589999998654211 11134677775432 799999999999
Q ss_pred -ceEEEEEEeCCCCCcceeeeEEEEEEEcCCC--CCeeecC---CeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceee
Q psy17146 103 -ARYQCQVSTGILGEPAIRSRFATLTVLVPPD--PPRIVQG---DTLYTTEDREIELECISANGKPPAEITWIDGTGTVM 176 (1011)
Q Consensus 103 -G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~--~~~i~~~---~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~ 176 (1011)
|.|+|.+.+...+..........|.|..+.. +|.+... ....+.+|+.+.|.|. +.|.|.+.+.|+|++....
T Consensus 212 ~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g~~v~L~C~-~~g~p~p~v~W~k~~~~~~ 290 (816)
T 3dmk_A 212 YKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCP-AQGYPVPVFRWYKFIEGTT 290 (816)
T ss_dssp SCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTTSCEEECCC-CBCSSCCEEEEEEECTTSS
T ss_pred cceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCccccccCccceEEeCCCeEEEEEE-eeecCCCeEEEEeCCCCCc
Confidence 9999999876544333333445677766432 4444322 3567889999999999 7789999999999644322
Q ss_pred eceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEE
Q psy17146 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256 (1011)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L 256 (1011)
.... ...+.+.....++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+.. .+....+.+|+.++|
T Consensus 291 ~~~~----~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~--~~~~~l~V~~~~~~~~-~~~~~~v~~G~~v~l 363 (816)
T 3dmk_A 291 RKQA----VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE--SVETVLTVTAPLSAKI-DPPTQTVDFGRPAVF 363 (816)
T ss_dssp CEEE----CCCSSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEE--EEEEEEEECEEEEEEE-ESSEEECCTTSCEEE
T ss_pred cCcc----eecCCceEeccceEEECCCCHhHCEEEEEEEEcCCCce--EEEEEEEEcCCCceee-CCCceEecCCCCEEE
Confidence 1111 11122233334589999999999999999999998865 4555666665554433 344567889999999
Q ss_pred EEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEE-----------Ee------------eCCc
Q psy17146 257 YCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQV-----------SV------------IGSN 313 (1011)
Q Consensus 257 ~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~-----------~~------------~~~~ 313 (1011)
.|.+.+.+. +.+.|+++|+.+... ...|.|.++.. ++.|.|.|.+.. .+ ..+.
T Consensus 364 ~C~~~g~p~-~~v~W~k~g~~~~~~--~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~ 439 (816)
T 3dmk_A 364 TCQYTGNPI-KTVSWMKDGKAIGHS--ESVLRIESVKK-EDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEE 439 (816)
T ss_dssp EEEEEEECC-CEEEEEETTEECSCC--SSEEEESSCCG-GGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCE
T ss_pred EEEEeccCC-CEEEEEECCEECCCC--CCEEEEcCCCH-HHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcce
Confidence 999998765 799999999988654 34566666654 557899998642 11 1235
Q ss_pred ccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcC-------------ccEEEEeecccccCCcEEEEEEEcCCccce
Q psy17146 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAAS-------------ATELYLTNITRHQHDSIVKCEVHNDVGKSE 380 (1011)
Q Consensus 314 ~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~-------------~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~ 380 (1011)
.+.+|+.++|.|.+.+.|.+ .+.|+++|..+..... ...|.|.++..+ |+|.|+|.|.|..|..+
T Consensus 440 ~v~~G~~v~L~C~~~g~p~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~n~~g~~~ 517 (816)
T 3dmk_A 440 TMEPGPSVFLKCVAGGNPTP-EISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAN-DGGLYKCIAKSKVGVAE 517 (816)
T ss_dssp EECSSSCEEEEEEEECSSCC-EEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTT-TCEEEEEEEEETTEEEE
T ss_pred EEcCCCCEEEEEEEecCCCC-EEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeecccc-CCEEEEEEEEECCCeEE
Confidence 67889999999999999887 9999999999865421 135999999998 99999999999999999
Q ss_pred eeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee------eccCCcEEEEeec-cCCCeEEE
Q psy17146 381 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTS-DDLAGRYY 453 (1011)
Q Consensus 381 ~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~-~~d~G~Y~ 453 (1011)
.++.|.|..+|.+. .+....+.+|+.+.|.|.+.|.|.+.+.|+|++.... ...++.|.|.++. .+|+|.|+
T Consensus 518 ~~~~l~V~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~ 596 (816)
T 3dmk_A 518 HSAKLNVYGLPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYT 596 (816)
T ss_dssp EEEEEEECSSCEEC-CCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEE
T ss_pred EEEEEEEecCCeeE-ccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEE
Confidence 99999999888654 3455678999999999999999999999999985432 3356789999997 69999999
Q ss_pred EEEEEcCCcceeeEEEEEEcCCCeeecc--CcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEee--------------
Q psy17146 454 CKASVMGFPEVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIG-------------- 517 (1011)
Q Consensus 454 C~a~n~~~~~~s~~~~v~v~~~p~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~-------------- 517 (1011)
|.|.|..+...+..+.+.+..+|.+... ....+.+|+.+.|.|.+.+.+.+..+.|+++|..+.
T Consensus 597 C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~ 676 (816)
T 3dmk_A 597 CVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG 676 (816)
T ss_dssp EEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTE
T ss_pred EEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCe
Confidence 9999987766777888888877776543 345678999999999999988888999999997652
Q ss_pred ---------ccCCCceEE--EcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCce-
Q psy17146 518 ---------VGSSDDYSV--HNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK- 585 (1011)
Q Consensus 518 ---------~~~~~~y~~--~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~- 585 (1011)
..+.|.|+| .|..|....++.|.|..+|.|...|.+..+.+|+.++|.|.+.|.|.|.++|+|++...
T Consensus 677 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~ 756 (816)
T 3dmk_A 677 SVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTP 756 (816)
T ss_dssp EEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSST
T ss_pred eEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCC
Confidence 235678876 79999999999999999999999999999999999999999999999999999986432
Q ss_pred -----------eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC
Q psy17146 586 -----------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 586 -----------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P 630 (1011)
....+++|.|.++..+|+|.|+|.|.| ..|.....+.+..+..+
T Consensus 757 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N-~~G~~~~~v~~~~~~~~ 811 (816)
T 3dmk_A 757 GEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAIN-GIGSGLSAVIMISVQAH 811 (816)
T ss_dssp TCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEEC-SSSSCEEEEEEEEEEC-
T ss_pred ccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEe-CCCCCcEEEEEEEeecc
Confidence 112356899999999999999999999 67777777766655433
No 5
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=4.2e-60 Score=591.19 Aligned_cols=612 Identities=19% Similarity=0.260 Sum_probs=113.0
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecC-CCceeEEEEeecccCCCce
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSD-EEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~-~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+|.+...+..+.+.+|++|+|.|.... .+.|++++..... ..|+.+.... .....+|.|.+++.+|+|.
T Consensus 30 ~~p~l~~~~~~~~v~~G~~vtL~C~~~~---~v~W~~~~~~~~~------~~~~~~~~~~~~~~~~~l~I~~~~~~d~G~ 100 (772)
T 3v2a_R 30 DLPRLSIQKDILTIKANTTLQITCRGQR---DLDWLWPNNQSGS------EQRVEVTECSDGLFCKTLTIPKVIGNDTGA 100 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEECCCCCeEEEcCCCCEEEEEeccC---CeeeeCCCCCCcc------CCceeEEEcCCCcEEEEEEECCCcHhhCEe
Confidence 5677776777889999999999999763 6899988753321 1233332211 1224589999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeee----cCCeeeecCC--CcEEEEEEccCCCCCcEEEEEeC--Cceee
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV----QGDTLYTTED--REIELECISANGKPPAEITWIDG--TGTVM 176 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~----~~~~~~v~eg--~~v~L~C~~~~g~P~~~i~W~k~--~~~l~ 176 (1011)
|+|.+... ..+..+.|.|..+.. +.+. ....+.+.+| +.+.|.|.+ .+ |.+.++|+|+ +..+.
T Consensus 101 Y~C~~~~~------~~~~~~~v~v~~~~~-~~~~~~~~~~~~~~v~~G~~~~v~L~C~~-~~-p~~~v~w~~~~~~~~~~ 171 (772)
T 3v2a_R 101 YKCFYRET------DLASVIYVYVQDYRS-PFIASVSDQHGVVYITENKNKTVVIPCLG-SI-SNLNVSLCARYPEKRFV 171 (772)
T ss_dssp --------------------------------------CEEEEEEESSCCCEEEECCCC-SC-SSCCEEEEEETTTEEEC
T ss_pred EEEEEcCC------CEEEEEEEEECCCCC-CceEcCcccceeEEEecCCCCeEEEEccC-CC-CCcEEEEEecCCCcccc
Confidence 99998732 134445666654433 3331 2246678889 889999994 33 8889999997 55554
Q ss_pred eceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCc--eEEEecCcceeecCceE
Q psy17146 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK--VQVSVIGSNRLVEGTDV 254 (1011)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~--~~~~~~~~~~v~~g~~v 254 (1011)
...... .......|.|.+++.+|+|.|+|.+.+... ...+..+.+.+...+. +.+.......+.+|+.+
T Consensus 172 ~~~~~~--------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v 242 (772)
T 3v2a_R 172 PDGNRI--------SWDSKKGFTIPSYMISYAGMVFCEAKINDE-SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 242 (772)
T ss_dssp CCSSSC--------EEETTTEEEEEGGGTTTCSEEEEEEEETTE-EEECCEEEEEEECCCEEEEEEECCSCEEEETTCCE
T ss_pred CCCcee--------ecCCCCCeEecCCChhhCeEEEEEEEECCc-eEEEEEEEEEEecCccceeeeCCCCceEEecCCcE
Confidence 321110 111123699999999999999999997643 2223333444433332 22322222355566666
Q ss_pred EEEEEcccC-CCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCc
Q psy17146 255 RLYCKAEAN-PSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSH 333 (1011)
Q Consensus 255 ~L~C~~~~~-~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~ 333 (1011)
+|.|.+.+. .+...+.|++++..+.. +..
T Consensus 243 ~L~C~~~~~~~~~~~~~W~~~~~~~~~-------------------------------------~~~------------- 272 (772)
T 3v2a_R 243 VLNCTARTELNVGIDFNWEYPSSKHQH-------------------------------------KKL------------- 272 (772)
T ss_dssp EEEEEEEECTTCCCEEEEECC---------------------------------------------C-------------
T ss_pred EEEEEEecCCCCceeEEEecCCccCCC-------------------------------------cee-------------
Confidence 666666553 22345555554432210 000
Q ss_pred cEEEEEECCeec--CCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCC---CceEecCCCcE
Q psy17146 334 MKYRWYINDQPV--PAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARP---YSVQVDRGAGV 408 (1011)
Q Consensus 334 ~~i~W~k~g~~l--~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p---~~~~v~~G~~v 408 (1011)
......... ........|.|.++..+ |+|.|+|.+.|..|..+..+.|.|..+|.+...+ ....+.+|+.+
T Consensus 273 ---~~~~~~~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v 348 (772)
T 3v2a_R 273 ---VNRDLKTQSGSEMKKFLSTLTIDGVTRS-DQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERV 348 (772)
T ss_dssp ---EEEEC-----CCCEEEEEEEEESSCCST-TCSEEEEEEECSSCEEEEEEEEEEECCCC-------------------
T ss_pred ---eeccccccccccceEEEEEEEECcCCcC-CCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcE
Confidence 000000000 01123468999999998 9999999999999988889999999988765443 45678999999
Q ss_pred EEEeecCCCCCCceEEEeCCCceee----ccCCcEEEEeeccCCCeEEEEEEEEcCCc-ceeeEEEEEEcCCCeeecc--
Q psy17146 409 NLLCDVDGNPAPEITWIHEDSDKVV----GNSPNLTLLMTSDDLAGRYYCKASVMGFP-EVGAEATVYLKGRPTIISH-- 481 (1011)
Q Consensus 409 ~l~C~~~g~p~p~v~W~k~~~~~~~----~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~~s~~~~v~v~~~p~~~~~-- 481 (1011)
.|.|.+.|+|.+.+.|+|++..... .....|.|.+++.+|+|.|+|.|.|..+. ..+..+.|.|..+|.+...
T Consensus 349 ~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~ 428 (772)
T 3v2a_R 349 RIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSL 428 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEeeeCCCeEEEEECCEeCCCCceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCccccccc
Confidence 9999999999999999999865432 23478999999999999999999996443 4466778888888876543
Q ss_pred --CcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeE--------------------------------e-----------
Q psy17146 482 --RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEE--------------------------------I----------- 516 (1011)
Q Consensus 482 --~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~--------------------------------i----------- 516 (1011)
+...+.+|+.+.|.|.+.+.|.+..+.|++++.. +
T Consensus 429 ~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 508 (772)
T 3v2a_R 429 ISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIE 508 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeecc
Confidence 2234789999999999999988867999996211 1
Q ss_pred ------------eccCCCceEE--EcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC
Q psy17146 517 ------------GVGSSDDYSV--HNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED 582 (1011)
Q Consensus 517 ------------~~~~~~~y~~--~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~ 582 (1011)
...+.|.|+| .|..|..+..+.|.|..+|.+...|. ..+.+|+.+.|.|.+.+.|.+.+.|+|++
T Consensus 509 ~~~~~~~~L~i~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~ 587 (772)
T 3v2a_R 509 GKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLG 587 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcceEEEEEEEeecccCeEEEEEEEccccccceeEEEEEECCceeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcC
Confidence 1135678876 78999999999999999998887775 45789999999999999999999999988
Q ss_pred Cceeec-----------------------------CCCcEEEeecCCCCCEEEEEEEEec-CCCceeeEE--EEEEcCCC
Q psy17146 583 SDKVVG-----------------------------NSPNLTLLMTSDDLAGRYYCKASVM-GFPEVGAEA--TVYLKGRP 630 (1011)
Q Consensus 583 ~~~~~~-----------------------------~~~~L~I~~v~~~d~G~Y~C~a~n~-~~~~~s~~~--~l~V~~~P 630 (1011)
..+... ....|+|.++..+|+|.|+|.|.|. +....+... .+.+..+|
T Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P 667 (772)
T 3v2a_R 588 PQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAP 667 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCC
Confidence 543210 1234999999999999999999993 222233334 44447788
Q ss_pred eeec-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEE
Q psy17146 631 TIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709 (1011)
Q Consensus 631 ~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 709 (1011)
.|.. +.+..+.+|+.++|.|.+.|.|.| .|+|+|||.++.. ..++.+.. ..++|.|.++..+|+|.|+|.
T Consensus 668 ~~~~~~~~~~v~~g~~~~l~C~~~g~P~p-~v~W~k~g~~l~~--~~~~~~~~------~~~~L~I~~v~~~D~G~Y~C~ 738 (772)
T 3v2a_R 668 TITGNLENQTTSIGESIEVSCTASGNPPP-QIMWFKDNETLVE--DSGIVLKD------GNRNLTIRRVRKEDEGLYTCQ 738 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeecCCCceEEeCCCCEEEEEEeCccCCC-eEEEEECCeECcC--CCCeEEcC------CCcEEEECcCCHHHCEEEEEE
Confidence 8874 456778999999999999999999 9999999999874 23444332 247899999999999999999
Q ss_pred EEcCCCCeEEEEEEEecCC
Q psy17146 710 VSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 710 a~N~~G~~~~~~~l~V~~~ 728 (1011)
|.|.+|.++.++.|.|.+.
T Consensus 739 a~N~~G~~~~~~~l~V~~~ 757 (772)
T 3v2a_R 739 ACSVLGCAKVEAFFIIEGA 757 (772)
T ss_dssp -------------------
T ss_pred EEeCCcceeEEEEEEEECC
Confidence 9999999999999998643
No 6
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=7.1e-53 Score=504.57 Aligned_cols=440 Identities=22% Similarity=0.400 Sum_probs=344.2
Q ss_pred CCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEE
Q psy17146 134 PPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFT 212 (1011)
Q Consensus 134 ~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 212 (1011)
+|.+. ....+.+.+|+.+.|.|. +.|.|.+.++|+|++..+....++......+ .++|.|.+++.+|+|.|+
T Consensus 5 pP~f~~~~~~~~v~~G~~v~L~C~-~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~------~~~L~I~~v~~~D~G~Y~ 77 (570)
T 3b43_A 5 PPYFIEPLEHVEAAIGEPITLQCK-VDGTPEIRIAWYKEHTKLRSAPAYKMQFKNN------VASLVINKVDHSDVGEYT 77 (570)
T ss_dssp CCEEEECCCCEEECTTSCEEEEEE-EESSSSCEEEEECSSSBCCCCSSEEEECCTT------EEEEEESSCCGGGCEEEE
T ss_pred CCcceEECCceEEcCCCEEEEEEE-EccCCCCEEEEEECCEEccCCCCEEEEEECC------EEEEEEccCChhhCEEEE
Confidence 34443 445778899999999999 6799999999999999887655554332222 368999999999999999
Q ss_pred EEEEeCCCCceeEEEEEEEEEe-CCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEe
Q psy17146 213 CQAQNTADRTYKVARLKLLVKY-APKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTN 291 (1011)
Q Consensus 213 C~a~n~~g~~~~s~~v~v~v~~-~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~ 291 (1011)
|.|.|..|....+..+.+.... +|.+ ....
T Consensus 78 C~a~N~~g~~~~~~~l~v~~~~~~p~~-~~~~------------------------------------------------ 108 (570)
T 3b43_A 78 CKAENSVGAVASSAVLVIKERKLPPSF-ARKL------------------------------------------------ 108 (570)
T ss_dssp EEEEETTEEEEEEEEEEECCCCCCCEE-SSCC------------------------------------------------
T ss_pred EEEEeCCceEEEEEEEEECCCCCCCcc-cccC------------------------------------------------
Confidence 9999998876444333322111 1211 0001
Q ss_pred eecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCc--------CccEEEEeeccccc
Q psy17146 292 ITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA--------SATELYLTNITRHQ 363 (1011)
Q Consensus 292 ~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~--------~~~~L~I~~~~~~~ 363 (1011)
.+..+.+|+.++|.|.+.+.|.+ .++|+|||..+.... ....|.|.++...
T Consensus 109 -------------------~~~~~~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~- 167 (570)
T 3b43_A 109 -------------------KDVHETLGFPVAFECRINGSEPL-QVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQS- 167 (570)
T ss_dssp -------------------CCEEEETTSCEEEEEEEESSSSC-EEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGG-
T ss_pred -------------------CCeEecCCCeEEEEEEEccCCCC-EEEEEECCEECcCCCCEEEEEECCEEEEEECcCChH-
Confidence 12334567777777777777665 788888877775432 2367999999987
Q ss_pred CCcEEEEEEEcCCccceeeEEEEEEe---cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee--------
Q psy17146 364 HDSIVKCEVHNDVGKSEDSETLDVTY---GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------- 432 (1011)
Q Consensus 364 d~G~Y~C~a~n~~g~~~~s~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-------- 432 (1011)
|+|.|+|.|.|..|..+.++.|.|.. +|.+...|....+.+|+.+.|.|.+.|.|.+.++|+|++..+.
T Consensus 168 d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~ 247 (570)
T 3b43_A 168 HVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT 247 (570)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEE
T ss_pred HCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEE
Confidence 99999999999999888888888864 6778888888899999999999999999999999999985432
Q ss_pred -eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEee
Q psy17146 433 -VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSY 511 (1011)
Q Consensus 433 -~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~ 511 (1011)
......|.|.+++.+|+|.|+|.|.|..
T Consensus 248 ~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~--------------------------------------------------- 276 (570)
T 3b43_A 248 LVENTATLTVLKVTKGDAGQYTCYASNVA--------------------------------------------------- 276 (570)
T ss_dssp EETTEEEEEESSBCGGGCEEEEEEEEETT---------------------------------------------------
T ss_pred EECCEEEEEEcccCcccCEEEEEEEECCC---------------------------------------------------
Confidence 2234579999999999999999999743
Q ss_pred CCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCc-eEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee---
Q psy17146 512 RGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPY-SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--- 587 (1011)
Q Consensus 512 ~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~-~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--- 587 (1011)
|..+.++.|.|..+|.|...+. ...+.+|+.+.|.|.+.|.|.+.+.|+|++..+..
T Consensus 277 -------------------g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~ 337 (570)
T 3b43_A 277 -------------------GKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK 337 (570)
T ss_dssp -------------------EEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSS
T ss_pred -------------------CcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCc
Confidence 2233334445555666554433 34578999999999999999999999999865422
Q ss_pred ------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEEEecCCCCe
Q psy17146 588 ------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEK 660 (1011)
Q Consensus 588 ------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~ 660 (1011)
...+.|.|.++..+|+|.|+|.|.| ..|..+..+.|.|..+|.+.. +....+.+|+.++|.|.+.|.|.| .
T Consensus 338 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N-~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p-~ 415 (570)
T 3b43_A 338 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHN-AAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPF-Q 415 (570)
T ss_dssp EEEEEETTEEEEEEESCCGGGCEEEEEEEEB-TTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSC-C
T ss_pred EEEEEECCEEEEEECCCCcccCEEEEEEEEe-CCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCC-E
Confidence 2346799999999999999999999 677888899999999999884 456778899999999999999999 9
Q ss_pred EEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 661 VTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 661 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
|+|+|+|..+. ...++.+.. ++..++|.|.++..+|+|.|+|.|.|.+|+++..+.|.|..+
T Consensus 416 v~W~k~g~~l~--~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~ 477 (570)
T 3b43_A 416 VSWHKDKRELR--SGKKYKIMS----ENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP 477 (570)
T ss_dssp CEEEETTEECC--SSSSEEEEE----ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCC
T ss_pred EEEEECCEECc--CCCCEEEEE----cCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccC
Confidence 99999999987 445666654 334578999999999999999999999999999999988654
No 7
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=8.4e-51 Score=495.35 Aligned_cols=483 Identities=22% Similarity=0.381 Sum_probs=373.5
Q ss_pred ceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeCCCC
Q psy17146 36 DQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILG 115 (1011)
Q Consensus 36 ~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~ 115 (1011)
...+.+|++++|.|.+.++.+.+.|++++..+.. ..|+.+..+ ..+|.|.+++.+|+|.|+|.+.+..+.
T Consensus 120 ~~~v~~g~~v~l~C~~~~p~~~v~W~~~g~~l~~------~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 189 (642)
T 1e07_A 120 SKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPV------SPRLQLSNG----NRTLTLFNVTRNDTASYKCETQNPVSA 189 (642)
T ss_pred ceeEecCCcEEEEEECCCCCeeEEEEECCeECCC------CCceEEcCC----CCEEEEeCCCcccCeeEEEEEecCCCC
Confidence 4568899999999999998889999999977642 345555322 247999999999999999999986432
Q ss_pred CcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEE
Q psy17146 116 EPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVK 195 (1011)
Q Consensus 116 ~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~ 195 (1011)
..+..+.|+|...|..+.+.. ....+.+|+.+.|.|. +.|+|.+.++|+|++..+.. .
T Consensus 190 ---~~s~~~~l~V~~~p~~~~~~~-~~~~~~~G~~~~l~C~-~~g~p~~~i~W~~~g~~i~~-----------------~ 247 (642)
T 1e07_A 190 ---RRSDSVILNVLYGPDAPTISP-LNTSYRSGENLNLSCH-AASNPPAQYSWFVNGTFQQS-----------------T 247 (642)
T ss_pred ---cccceEEEEEEeCCCCcEEec-CCcccccCCEEEEEEE-cCCCCCcEEEEEECCeEccc-----------------C
Confidence 245678899998777666643 3556789999999999 68999999999998876521 2
Q ss_pred EEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCc-eEEEecCcceeecCceEEEEEEcccCCCccEEEEEeC
Q psy17146 196 STLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK-VQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIN 274 (1011)
Q Consensus 196 ~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~-~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~ 274 (1011)
+.|.|.+++.+|+|.|+|.|.|..|....+..+.|.|...|. ..+.......+..|
T Consensus 248 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g----------------------- 304 (642)
T 1e07_A 248 QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDE----------------------- 304 (642)
T ss_pred CceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCceeEecC-----------------------
Confidence 469999999999999999999999877666677777765432 22222222223334
Q ss_pred CcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC------
Q psy17146 275 DQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA------ 348 (1011)
Q Consensus 275 ~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~------ 348 (1011)
+.+.|.|.+.+.| ..+.|+|+|..+...
T Consensus 305 --------------------------------------------~~v~l~C~~~~~p--~~v~W~~~g~~l~~~~~~~~~ 338 (642)
T 1e07_A 305 --------------------------------------------DAVALTCEPEIQN--TTYLWWVNNQSLPVSPRLQLS 338 (642)
T ss_pred --------------------------------------------CcEEEEEECCCCC--ccEEEEECCccCCCcCCEEEe
Confidence 4455555554443 155555555554332
Q ss_pred cCccEEEEeecccccCCcEEEEEEEcCCccc-eeeEEEEEEecceE-eeCCCceEecCCCcEEEEeecCCCCCCceEEEe
Q psy17146 349 ASATELYLTNITRHQHDSIVKCEVHNDVGKS-EDSETLDVTYGPRF-RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 426 (1011)
Q Consensus 349 ~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~-~~s~~l~V~~~P~~-~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k 426 (1011)
..+..|.|.++..+ |+|.|+|.|.|..|.. +..+.|.|..+|.+ ...+....+.+|+.+.|.|.+.|+|.+.+.|+|
T Consensus 339 ~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~ 417 (642)
T 1e07_A 339 NDNRTLTLLSVTRN-DVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI 417 (642)
T ss_pred CCCCEEEEeccCcc-cCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEE
Confidence 23468999999997 9999999999999875 56788999887753 456777889999999999999999999999999
Q ss_pred CCCceeeccCCcEEEEeeccCCCeEEEEEEEEcCC-cceeeEEEEEEcC---CCeeeccCcccccCCCeEEEEeEeeeCC
Q psy17146 427 EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGF-PEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIP 502 (1011)
Q Consensus 427 ~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~-~~~s~~~~v~v~~---~p~~~~~~~~~~~~g~~~~l~C~~~~~~ 502 (1011)
++..+ .....|.|.++..+|+|.|+|.|.|..+ ...+..+.|.+.. +|.+.......+.+|+.+.|.|.+.+ +
T Consensus 418 ~g~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~-~ 494 (642)
T 1e07_A 418 DGNIQ--QHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEA-Q 494 (642)
T ss_pred CCEEc--CCCceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCC-C
Confidence 98544 3456799999999999999999999643 3444556677654 45555555566789999999999993 4
Q ss_pred CCCeeEEeeCCeEee--------------------ccCCCceEE--EcCCCCCcc-cEEEEEEecc-eeecCCceEEEcC
Q psy17146 503 PPEKVTWSYRGEEIG--------------------VGSSDDYSV--HNDVGKSED-SETLDVTYGP-RFRARPYSVQVDR 558 (1011)
Q Consensus 503 ~~~~v~W~~~~~~i~--------------------~~~~~~y~~--~n~~G~~~~-~~~l~V~~~P-~~~~~p~~~~v~~ 558 (1011)
+..+.|+++|..+. ..|.|.|+| .|..|.... .+.|.|..+| .+...|.+..+.+
T Consensus 495 -~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~ 573 (642)
T 1e07_A 495 -NTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLS 573 (642)
T ss_pred -CcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEc
Confidence 45999999998663 235788886 688887644 6899998766 4667788899999
Q ss_pred CCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 559 GAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 559 G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
|+.++|.|.+.|.|.|.+.|+|+|..+ ..+..|.|.++..+|+|.|+|.|.| ..|..+.++.|.|.
T Consensus 574 g~~~~l~C~~~g~p~p~v~W~~~g~~i--~~~~~L~i~~~~~~d~G~Y~C~a~N-~~G~~~~s~~l~V~ 639 (642)
T 1e07_A 574 GANLNLSCHSASNPSPQYSWRINGIPQ--QHTQVLFIAKITPNNNGTYACFVSN-LATGRNNSIVKSIT 639 (642)
T ss_pred CCcEEEEEEeccCCCCeEEEEECCEEC--ccCceEEECcccccCCeEEEEEEEe-cccCcceeEEEEEE
Confidence 999999999999999999999998654 3457899999999999999999999 56666666666664
No 8
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=4.2e-48 Score=482.77 Aligned_cols=512 Identities=17% Similarity=0.238 Sum_probs=125.2
Q ss_pred cCCceeEEec--CcEEEEEEEcCCCCeeEEeeC--CeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 33 EPQDQTAVVG--SRVTLPCRVIDKTGVLQWTKD--DFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 33 ~p~~~~v~~G--~~v~L~C~v~~~~~~v~W~k~--~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
.+..+.+.+| ++|+|.|.+.++...+.|+++ +..+... ..+.... ....|.|.+++.+|+|.|+|.
T Consensus 132 ~~~~~~v~~G~~~~v~L~C~~~~p~~~v~w~~~~~~~~~~~~-----~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~ 201 (772)
T 3v2a_R 132 QHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPD-----GNRISWD-----SKKGFTIPSYMISYAGMVFCE 201 (772)
T ss_dssp CEEEEEEESSCCCEEEECCCCSCSSCCEEEEEETTTEEECCC-----SSSCEEE-----TTTEEEEEGGGTTTCSEEEEE
T ss_pred cceeEEEecCCCCeEEEEccCCCCCcEEEEEecCCCccccCC-----CceeecC-----CCCCeEecCCChhhCeEEEEE
Confidence 3566788899 999999999998889999997 5443211 1122221 123699999999999999999
Q ss_pred EEeCCCCCcceeeeEEEEEEEcCCCCC-eeecCCeeeecCCCcEEEEEEccCC-CCCcEEEEEeCCceeeeceeEEEeee
Q psy17146 109 VSTGILGEPAIRSRFATLTVLVPPDPP-RIVQGDTLYTTEDREIELECISANG-KPPAEITWIDGTGTVMSNVRVTEEAS 186 (1011)
Q Consensus 109 ~~~~~~~~~~~~s~~~~l~V~~~p~~~-~i~~~~~~~v~eg~~v~L~C~~~~g-~P~~~i~W~k~~~~l~~~~~~~~~~~ 186 (1011)
+.+... ...+....+.+...+.+. .+.....+.+.+|+.+.|.|.+... .|.+.+.|++++..+...........
T Consensus 202 ~~~~~~---~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 278 (772)
T 3v2a_R 202 AKINDE---SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278 (772)
T ss_dssp EEETTE---EEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-
T ss_pred EEECCc---eEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeecccc
Confidence 987421 223344555555433222 2233345688999999999994322 56789999999887655332221111
Q ss_pred --cCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEe--cCcceeecCceEEEEEEccc
Q psy17146 187 --VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSV--IGSNRLVEGTDVRLYCKAEA 262 (1011)
Q Consensus 187 --~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~--~~~~~v~~g~~v~L~C~~~~ 262 (1011)
.........+.|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|..+|.+.... .....+.+|+.++|.|.+.+
T Consensus 279 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~--~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~ 356 (772)
T 3v2a_R 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK--KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLG 356 (772)
T ss_dssp ----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEE--EEEEEEEEECCCC---------------------------
T ss_pred ccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcce--eEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEee
Confidence 111234456799999999999999999999987754 667777887777654433 23456889999999999998
Q ss_pred CCCccEEEEEeCCcccCCccc---cceEEEEeeecccCCcEEEEEEEEEe-------------e------------CCcc
Q psy17146 263 NPSHMKYRWYINDQPVPAAAS---ATELYLTNITRHQHDSIVKCEVQVSV-------------I------------GSNR 314 (1011)
Q Consensus 263 ~~~~~~i~W~~~~~~l~~~~~---~~~l~i~~~~~~~~~~~~~c~~~~~~-------------~------------~~~~ 314 (1011)
.++ +.+.|+++|+.+..... ...|.|.++.. ++.|.|.|.+.... . ....
T Consensus 357 ~p~-~~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~ 434 (772)
T 3v2a_R 357 YPP-PEIKWYKNGIPLESNHTIKAGHVLTIMEVSE-RDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDS 434 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCC-CeEEEEECCEeCCCCceEccceeEEEecCCh-hcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccc
Confidence 665 68999999998876432 24555655544 56788999765321 0 0123
Q ss_pred cccCCcEEEEEEeecCCCccEEEEEECCee--------------------------------cCCC-----------cCc
Q psy17146 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQP--------------------------------VPAA-----------ASA 351 (1011)
Q Consensus 315 v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~--------------------------------l~~~-----------~~~ 351 (1011)
+.+|+.++|.|.+.+.|.+..+.|++++.. +... ...
T Consensus 435 ~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~ 514 (772)
T 3v2a_R 435 YQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTV 514 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEE
Confidence 788999999999999998745999997322 1110 112
Q ss_pred cEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce
Q psy17146 352 TELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK 431 (1011)
Q Consensus 352 ~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~ 431 (1011)
..|.|.++ + |+|.|+|.|.|..|..+..+.|.|..+|.+...|. ..+.+|+.+.|.|.+.+.|.+.+.|+|++...
T Consensus 515 ~~L~i~~~--~-d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~ 590 (772)
T 3v2a_R 515 STLVIQAA--N-VSALYKCEAVNKVGRGERVISFHVTRGPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQP 590 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeec--c-cCeEEEEEEEccccccceeEEEEEECCceeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcCCcc
Confidence 46777776 3 89999999999999999999999999888877665 35889999999999999999999999987543
Q ss_pred eec-----------------------------cCCcEEEEeeccCCCeEEEEEEEEc-CCcceeeEEEEEEcCCCeeecc
Q psy17146 432 VVG-----------------------------NSPNLTLLMTSDDLAGRYYCKASVM-GFPEVGAEATVYLKGRPTIISH 481 (1011)
Q Consensus 432 ~~~-----------------------------~~~~L~I~~v~~~d~G~Y~C~a~n~-~~~~~s~~~~v~v~~~p~~~~~ 481 (1011)
... ....|.|.+++.+|+|.|+|.|.|. ++...+....+
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l----------- 659 (772)
T 3v2a_R 591 LPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQL----------- 659 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEee-----------
Confidence 210 1224999999999999999999983 22221112222
Q ss_pred CcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCc
Q psy17146 482 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAG 561 (1011)
Q Consensus 482 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~ 561 (1011)
.+.+..+|.|...+.+..+.+|+.
T Consensus 660 --------------------------------------------------------~v~~~~~P~~~~~~~~~~v~~g~~ 683 (772)
T 3v2a_R 660 --------------------------------------------------------TVLERVAPTITGNLENQTTSIGES 683 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------cccccCCCEeecCCCceEEeCCCC
Confidence 122346777887788888999999
Q ss_pred EEEEEEEecCCCCeEEEEecCCceeec-------CCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee
Q psy17146 562 VNLLCDVDGNPAPEITWIHEDSDKVVG-------NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII 633 (1011)
Q Consensus 562 ~~l~C~~~g~p~p~v~W~k~~~~~~~~-------~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~ 633 (1011)
++|.|.+.|.|.|.++|+|+|..+... .+++|.|.++..+|+|.|+|.|.| ..|..+..+.|.|.++|...
T Consensus 684 ~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N-~~G~~~~~~~l~V~~~p~~~ 761 (772)
T 3v2a_R 684 IEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACS-VLGCAKVEAFFIIEGAQEKT 761 (772)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred EEEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEe-CCcceeEEEEEEEECCCCcc
Confidence 999999999999999999998655332 367999999999999999999999 68888899999999988754
No 9
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=2.2e-47 Score=453.15 Aligned_cols=421 Identities=18% Similarity=0.239 Sum_probs=292.4
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
+|.|...+.++.+.+|++++|.|.+.+ .+.|+|++..+. . .....+|+|.+++.+|+|.|+
T Consensus 36 pP~i~~~~~~~~v~~G~~v~l~C~~~~---~v~W~~~~~~~~----------~------~~~~~~L~I~~~~~~D~G~Y~ 96 (524)
T 2ec8_A 36 PPSIHPGKSDLIVRVGDEIRLLCTDPG---FVKWTFEILDET----------N------ENKQNEWITEKAEATNTGKYT 96 (524)
T ss_dssp CCEEESCCSEEECCTTSCEEEEEECTT---EEEEEEESSSCC----------E------EECSSEEEESSCCSTTCEEEE
T ss_pred CCccCCCCceEEEeCCCeEEEEEeCCc---eEEEcCCCcccc----------c------cCccceEEEcccchhhCEEEE
Confidence 455556777899999999999999986 899999997551 0 113348999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEe-CCceeeeceeEEEee
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWID-GTGTVMSNVRVTEEA 185 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k-~~~~l~~~~~~~~~~ 185 (1011)
|.+.+ + .+..+.|.|..++... .....+.+.+|+.+.|.|. +.+.|.+.++|+| ++..+..+.++...
T Consensus 97 C~a~n---g----~~~~~~l~V~~p~~~~--~~~~~~~v~~G~~v~l~C~-~~~~~~~~v~W~~~~g~~l~~~~~~~~~- 165 (524)
T 2ec8_A 97 CTNKH---G----LSNSIYVFVRDPAKLF--LVDRSLYGKEDNDTLVRCP-LTDPEVTNYSLKGCQGKPLPKDLRFIPD- 165 (524)
T ss_dssp EEETT---S----CEEEEEEECCCSSCSB--CCCCCCCEETTSCEEECCC-BSCCCCSCEEEECSSSCCCCSSCEEEEE-
T ss_pred EeecC---C----cceEEEEEECCCCccc--ccccceEEEcCCeEEEECc-CCCCccceEEEEccCCcCcCCCCceeEC-
Confidence 99987 2 2566777777655432 4445677889999999999 5676778999998 66666555444321
Q ss_pred ecCCceEEEEEEEEEeeccCcCCc-EEEEEEEeCCCCceeEEEEEEEEE----eCCceEEEecCcceeecCceEEEEEEc
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNT-TFTCQAQNTADRTYKVARLKLLVK----YAPKVQVSVIGSNRLVEGTDVRLYCKA 260 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G-~Y~C~a~n~~g~~~~s~~v~v~v~----~~P~~~~~~~~~~~v~~g~~v~L~C~~ 260 (1011)
.+ ..|.|.+++.+|+| .|+|.|.|..+.. .+..+.|.|. .+|.+.. ......+
T Consensus 166 -~~-------~~L~i~~~~~~d~G~~Y~C~a~n~~~~~-~s~~~~l~V~~~~~~~p~i~~-~~~~~~v------------ 223 (524)
T 2ec8_A 166 -PK-------AGIMIKSVKRAYHRLCLHCSVDQEGKSV-LSEKFILKVRPAFKAVPVVSV-SKASYLL------------ 223 (524)
T ss_dssp -TT-------TEEEEESCCGGGTTCEEEEEEC----CC-CCCCEECCEECCCCSCCEEEC-SCSEEEE------------
T ss_pred -CC-------ccEEEeccchhhCCceEEEEEEECCceE-EEEEEEEEEEeCCCCCCcEEe-cCCcceE------------
Confidence 22 26999999999999 9999999986654 2345566665 2333321 1122234
Q ss_pred ccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEE
Q psy17146 261 EANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYI 340 (1011)
Q Consensus 261 ~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k 340 (1011)
.+|+.++|.|.+.+.|.+..+.|+|
T Consensus 224 -------------------------------------------------------~~G~~v~L~C~~~g~p~p~~i~W~~ 248 (524)
T 2ec8_A 224 -------------------------------------------------------REGEEFTVTCTIKDVSSSVYSTWKR 248 (524)
T ss_dssp -------------------------------------------------------ETTSCEEEEEEEEESSTTCEEEEEE
T ss_pred -------------------------------------------------------EcCCcEEEEEEEecCCCcEEEEEEe
Confidence 4455555555555444443355555
Q ss_pred CCeec--CC-----------CcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCC---CceEecC
Q psy17146 341 NDQPV--PA-----------AASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARP---YSVQVDR 404 (1011)
Q Consensus 341 ~g~~l--~~-----------~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p---~~~~v~~ 404 (1011)
++..+ .. ......|.|.++..+ |+|.|+|.|.|..|..+..+.|.|..+|.+...+ ....+.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~ 327 (524)
T 2ec8_A 249 ENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN-DSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVND 327 (524)
T ss_dssp TTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTT-TCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECT
T ss_pred CCCCCccccccccccccCCccceEEEEEECCCCHH-HCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcC
Confidence 55442 10 123578999999987 9999999999999999889999999999887654 4688999
Q ss_pred CCcEEEEeecCCCCCCc-eEEEeCCCceeec--------------cCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEE
Q psy17146 405 GAGVNLLCDVDGNPAPE-ITWIHEDSDKVVG--------------NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 469 (1011)
Q Consensus 405 G~~v~l~C~~~g~p~p~-v~W~k~~~~~~~~--------------~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 469 (1011)
|+.+.|.|.+.|+|.|. +.|+|++..+... ....|.|.+++.+|+|.|+|.|.|..
T Consensus 328 G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~--------- 398 (524)
T 2ec8_A 328 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSD--------- 398 (524)
T ss_dssp TCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSS---------
T ss_pred CCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecC---------
Confidence 99999999999999999 9999998653321 12479999999999999999999643
Q ss_pred EEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeec
Q psy17146 470 VYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRA 549 (1011)
Q Consensus 470 v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~ 549 (1011)
|....++.|.|..+|.+..
T Consensus 399 -------------------------------------------------------------g~~~~~~~l~V~~~P~i~~ 417 (524)
T 2ec8_A 399 -------------------------------------------------------------VNAAIAFNVYVNTKPEILT 417 (524)
T ss_dssp -------------------------------------------------------------CEEEEEEEEEECEEEEEEE
T ss_pred -------------------------------------------------------------ceEEEEEEEEEecCCeEee
Confidence 3333344445555565554
Q ss_pred CCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----------------ecCCCcEEE----eecCCCCCEEEEE
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----------------VGNSPNLTL----LMTSDDLAGRYYC 608 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----------------~~~~~~L~I----~~v~~~d~G~Y~C 608 (1011)
.+. ..+| +|.|.+.|.|.|.++|+|++..+. ....+.|.+ .....+|+|.|+|
T Consensus 418 ~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C 491 (524)
T 2ec8_A 418 YDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVEC 491 (524)
T ss_dssp EEC---CSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----C
T ss_pred ccc---CcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEE
Confidence 433 3455 999999999999999999975431 133455653 3334699999999
Q ss_pred EEEecCCCceeeEEEEEEcCCCee
Q psy17146 609 KASVMGFPEVGAEATVYLKGRPTI 632 (1011)
Q Consensus 609 ~a~n~~~~~~s~~~~l~V~~~P~i 632 (1011)
.|.| ..|..+..+.|.|+++|.-
T Consensus 492 ~a~N-~~G~~~~~~~l~V~e~~~~ 514 (524)
T 2ec8_A 492 KAYN-DVGKTSAYFNFAFKGNNKE 514 (524)
T ss_dssp EEEC-SSCEEECCCCCCC------
T ss_pred EEEc-CCCceEEEEEEEEecCCHH
Confidence 9999 6888888899999877653
No 10
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=4.6e-46 Score=441.84 Aligned_cols=431 Identities=18% Similarity=0.248 Sum_probs=298.2
Q ss_pred EEEEEEEcCCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEe
Q psy17146 123 FATLTVLVPPDPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT 201 (1011)
Q Consensus 123 ~~~l~V~~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~ 201 (1011)
.+.|.|..+ |.|. ..+.+.+.+|+.+.|.|. +.+ .++|+|++..+. .... .++|.|.
T Consensus 28 ~i~l~v~~p---P~i~~~~~~~~v~~G~~v~l~C~-~~~----~v~W~~~~~~~~-------~~~~-------~~~L~I~ 85 (524)
T 2ec8_A 28 SVSPGEPSP---PSIHPGKSDLIVRVGDEIRLLCT-DPG----FVKWTFEILDET-------NENK-------QNEWITE 85 (524)
T ss_dssp -----CCCC---CEEESCCSEEECCTTSCEEEEEE-CTT----EEEEEEESSSCC-------EEEC-------SSEEEES
T ss_pred eEEcCCCCC---CccCCCCceEEEeCCCeEEEEEe-CCc----eEEEcCCCcccc-------ccCc-------cceEEEc
Confidence 355566544 3454 345778999999999999 444 999999988661 0111 2489999
Q ss_pred eccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCc
Q psy17146 202 PKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA 281 (1011)
Q Consensus 202 ~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~ 281 (1011)
+++.+|+|.|+|.|.| |. +..+.|.|..+|... .......+.+|+.++|.|.+.+.+ .+.+.|++.
T Consensus 86 ~~~~~D~G~Y~C~a~n--g~---~~~~~l~V~~p~~~~-~~~~~~~v~~G~~v~l~C~~~~~~-~~~v~W~~~------- 151 (524)
T 2ec8_A 86 KAEATNTGKYTCTNKH--GL---SNSIYVFVRDPAKLF-LVDRSLYGKEDNDTLVRCPLTDPE-VTNYSLKGC------- 151 (524)
T ss_dssp SCCSTTCEEEEEEETT--SC---EEEEEEECCCSSCSB-CCCCCCCEETTSCEEECCCBSCCC-CSCEEEECS-------
T ss_pred ccchhhCEEEEEeecC--Cc---ceEEEEEECCCCccc-ccccceEEEcCCeEEEECcCCCCc-cceEEEEcc-------
Confidence 9999999999999998 42 666777777666544 223333455555555555555432 244444440
Q ss_pred cccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC-----cCccEEEE
Q psy17146 282 ASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-----ASATELYL 356 (1011)
Q Consensus 282 ~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~-----~~~~~L~I 356 (1011)
||..+..+ .....|.|
T Consensus 152 -----------------------------------------------------------~g~~l~~~~~~~~~~~~~L~i 172 (524)
T 2ec8_A 152 -----------------------------------------------------------QGKPLPKDLRFIPDPKAGIMI 172 (524)
T ss_dssp -----------------------------------------------------------SSCCCCSSCEEEEETTTEEEE
T ss_pred -----------------------------------------------------------CCcCcCCCCceeECCCccEEE
Confidence 44443321 22457999
Q ss_pred eecccccCCc-EEEEEEEcCCccc-eeeEEEEEE----ecceEeeCCCceEecCCCcEEEEeecCCCCCCc-eEEEeCCC
Q psy17146 357 TNITRHQHDS-IVKCEVHNDVGKS-EDSETLDVT----YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDS 429 (1011)
Q Consensus 357 ~~~~~~~d~G-~Y~C~a~n~~g~~-~~s~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~-v~W~k~~~ 429 (1011)
.++..+ |+| .|+|.|.|..|.. +..+.|.|. .+|.+...+.+..+.+|+.+.|.|.+.|.|.+. +.|+|++.
T Consensus 173 ~~~~~~-d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~ 251 (524)
T 2ec8_A 173 KSVKRA-YHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENS 251 (524)
T ss_dssp ESCCGG-GTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTC
T ss_pred eccchh-hCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCC
Confidence 999998 999 9999999987765 458889887 688898989888999999999999999999887 99999987
Q ss_pred ce--e------------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEE
Q psy17146 430 DK--V------------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVE 495 (1011)
Q Consensus 430 ~~--~------------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~ 495 (1011)
.. . ......|.|.+++.+|+|.|+|.|.|..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~----------------------------------- 296 (524)
T 2ec8_A 252 QTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTF----------------------------------- 296 (524)
T ss_dssp SCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSS-----------------------------------
T ss_pred CCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecC-----------------------------------
Confidence 62 1 2234679999999999999999999643
Q ss_pred eEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCC---ceEEEcCCCcEEEEEEEecCC
Q psy17146 496 CSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARP---YSVQVDRGAGVNLLCDVDGNP 572 (1011)
Q Consensus 496 C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p---~~~~v~~G~~~~l~C~~~g~p 572 (1011)
|.....+.|.|..+|.+...| ....+.+|+.++|.|.+.|.|
T Consensus 297 -----------------------------------g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P 341 (524)
T 2ec8_A 297 -----------------------------------GSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFP 341 (524)
T ss_dssp -----------------------------------CEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEES
T ss_pred -----------------------------------CceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecC
Confidence 222333444555555554433 468899999999999999999
Q ss_pred CCe-EEEEecCCceeecC--------------CCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecCCc
Q psy17146 573 APE-ITWIHEDSDKVVGN--------------SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRT 637 (1011)
Q Consensus 573 ~p~-v~W~k~~~~~~~~~--------------~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~ 637 (1011)
.|. +.|+|++..+.... ...|.|.++..+|+|.|+|.|.| ..+..+..+.|.|..+|.|.....
T Consensus 342 ~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~l~V~~~P~i~~~~~ 420 (524)
T 2ec8_A 342 KPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSN-SDVNAAIAFNVYVNTKPEILTYDR 420 (524)
T ss_dssp CCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEEC-SSCEEEEEEEEEECEEEEEEEEEC
T ss_pred CCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEe-cCceEEEEEEEEEecCCeEeeccc
Confidence 999 99999986543221 25899999999999999999999 677889999999999999885432
Q ss_pred eeeecCCcEEEEEEEEecCCCCeEEEEECCeEeccc------CCCCeEEecCCcCcccee-EEEEcCCCCCCCEEEEEEE
Q psy17146 638 QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG------SSDDYSVLEDPLKEGIKS-TLIIRESRHDHFGVYNCSV 710 (1011)
Q Consensus 638 ~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~------~~~~~~~~~~~~~~~~~~-~L~I~~~~~~d~G~Y~C~a 710 (1011)
..+| +|.|.+.|.|.| .|+|+++|..+... .+.+...... ...+... ...|.....+|+|.|+|.|
T Consensus 421 --~~~g---~l~C~~~g~P~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~s~l~~~~~~d~G~Y~C~a 493 (524)
T 2ec8_A 421 --LVNG---MLQCVAAGFPEP-TIDWYFCPGTEQRCSASVLPVDVQTLNSSG-PPFGKLVVQSSIDSSAFKHNGTVECKA 493 (524)
T ss_dssp --CSSS---CEEEEEEEESCC-EEECCCC----------CCCCCCCCCCC-C-CSSSCEEEEEEECCCSCCC-----CEE
T ss_pred --CcCc---EEEEEEEeecCC-EEEEEECCCcccccccccCCCCceeeeecc-CCCCcceEEEEEEEEEccCCEEEEEEE
Confidence 3455 999999999999 99999998766310 1111111110 1112111 1123444469999999999
Q ss_pred EcCCCCeEEEEEEEecC
Q psy17146 711 SNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 711 ~N~~G~~~~~~~l~V~~ 727 (1011)
.|.+|.++..+.|.|.+
T Consensus 494 ~N~~G~~~~~~~l~V~e 510 (524)
T 2ec8_A 494 YNDVGKTSAYFNFAFKG 510 (524)
T ss_dssp ECSSCEEECCCCCCC--
T ss_pred EcCCCceEEEEEEEEec
Confidence 99999999999998864
No 11
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=9.4e-44 Score=428.32 Aligned_cols=465 Identities=15% Similarity=0.196 Sum_probs=323.6
Q ss_pred ecCCceeEEecCcEEEEEEEcCCC-C---eeEEeeCCeecCCcc--------cCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDKT-G---VLQWTKDDFALGPHR--------NLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~~-~---~v~W~k~~~~l~~~~--------~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
..|+++.+.+|++|+|.|.+.+.. + .+.|+|++..+.... .....+|+.+......+.++|+|.+++.
T Consensus 5 ~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~ 84 (585)
T 2ocw_A 5 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ 84 (585)
T ss_pred cCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCc
Confidence 467889999999999999998742 2 799999986431000 1112357777665456778999999999
Q ss_pred CCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee--
Q psy17146 100 DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS-- 177 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~-- 177 (1011)
+|+|.|+|.+.+.... .+..+.|.|..+|.. ......+.+.+|+.+.|.|.+..+.|.+.+.|+|++.....
T Consensus 85 ~D~G~Y~C~~~n~~~~----~~~~~~l~V~~~p~~--~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~ 158 (585)
T 2ocw_A 85 DDSGRYKCGLGINSRG----LSFDVSLEVSQGPGL--LNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLV 158 (585)
T ss_pred ccCEEEEEEcccCCCC----ceEEEEEEEecCccc--cCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEE
Confidence 9999999999875432 456688888876542 33445777899999999999554566788999998865321
Q ss_pred --ceeEEEeeecCCce-EE------EEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCccee
Q psy17146 178 --NVRVTEEASVDGRR-TT------VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRL 248 (1011)
Q Consensus 178 --~~~~~~~~~~~~~~-~~------~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v 248 (1011)
.... ......++. +. ...+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.. ...+
T Consensus 159 ~~~~~~-~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~--~~~~~l~V~~~~p~------~~~~ 229 (585)
T 2ocw_A 159 IDSSGY-VNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN--KKNADLQVLKPEPE------LVYE 229 (585)
T ss_pred ecCCcc-cCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccc--cceEEEEEccCCCc------eeEE
Confidence 1000 000001111 11 12379999999999999999999988876 45556666554422 1245
Q ss_pred ecCceEEEEEEcccCCCc-cEEEEE-eCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEE
Q psy17146 249 VEGTDVRLYCKAEANPSH-MKYRWY-INDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCK 326 (1011)
Q Consensus 249 ~~g~~v~L~C~~~~~~~~-~~i~W~-~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~ 326 (1011)
.+|+.+.|.|.+...++. +.+.|+ +++........
T Consensus 230 ~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~------------------------------------------- 266 (585)
T 2ocw_A 230 DLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVN------------------------------------------- 266 (585)
T ss_pred cCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEe-------------------------------------------
Confidence 689999999997554443 688886 77643211000
Q ss_pred eecCCCccEEEEEECCe-ecCCC--cCccEEEEeecccccCCcEEEEEEEcCCccce-----eeEEEEEEecceEeeCCC
Q psy17146 327 AEANPSHMKYRWYINDQ-PVPAA--ASATELYLTNITRHQHDSIVKCEVHNDVGKSE-----DSETLDVTYGPRFRARPY 398 (1011)
Q Consensus 327 ~~~~p~~~~i~W~k~g~-~l~~~--~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~-----~s~~l~V~~~P~~~~~p~ 398 (1011)
..+.. .+..+++ .+... .....|.|.++..+ |+|.|+|.|.|. |... ..+.|.|..+|.+...+.
T Consensus 267 ~~~~~-----~~~~~~~~~~~~~~~~g~~~L~i~~v~~~-d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~~ 339 (585)
T 2ocw_A 267 TLGKR-----APAFEGRILLNPQDKDGSFSVVITGLRKE-DAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSPT 339 (585)
T ss_pred CCCcC-----CcccCCceEeeccCCCcEEEEEEccCChh-hCEEEEEEEEcC-CCccccCceeeEEEEEecccccccCCc
Confidence 00000 0000000 01110 12237999999998 999999999995 4443 788999999999988889
Q ss_pred ceEecCCCcEEEEeecCCCCCCce----EEEe--CCC--ceee---------------c---cCC--cEEEEeeccCCCe
Q psy17146 399 SVQVDRGAGVNLLCDVDGNPAPEI----TWIH--EDS--DKVV---------------G---NSP--NLTLLMTSDDLAG 450 (1011)
Q Consensus 399 ~~~v~~G~~v~l~C~~~g~p~p~v----~W~k--~~~--~~~~---------------~---~~~--~L~I~~v~~~d~G 450 (1011)
...+.+|+.+.|.|.+.+.|.+.+ .|++ ++. .+.. . ..+ .|.|.+++.+|+|
T Consensus 340 ~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G 419 (585)
T 2ocw_A 340 VVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAG 419 (585)
T ss_pred ceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCE
Confidence 999999999999999999999987 7999 765 2211 0 122 2899999999999
Q ss_pred EEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCC
Q psy17146 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDV 530 (1011)
Q Consensus 451 ~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~ 530 (1011)
.|+|.| |..
T Consensus 420 ~Y~C~a-n~~---------------------------------------------------------------------- 428 (585)
T 2ocw_A 420 FYWCLT-NGD---------------------------------------------------------------------- 428 (585)
T ss_pred EEEEcc-cCC----------------------------------------------------------------------
Confidence 999998 532
Q ss_pred CCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEe----cCCCCeEEEEecCCceeec----------------CC
Q psy17146 531 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVD----GNPAPEITWIHEDSDKVVG----------------NS 590 (1011)
Q Consensus 531 G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~----g~p~p~v~W~k~~~~~~~~----------------~~ 590 (1011)
|.....+.|.|..+|.....+....+.+|+.++|.|.+. +.|.+.+.|+|+|..+... ..
T Consensus 429 g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~ 508 (585)
T 2ocw_A 429 TLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRL 508 (585)
T ss_pred CccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccE
Confidence 222233344444433333346778899999999999997 7788899999998654321 11
Q ss_pred CcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCee
Q psy17146 591 PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTI 632 (1011)
Q Consensus 591 ~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i 632 (1011)
+.|.|.++..+|+|.|+|.|.|..+...+..+.|.|..+|..
T Consensus 509 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p~~ 550 (585)
T 2ocw_A 509 VSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAA 550 (585)
T ss_pred EEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeeeec
Confidence 589999999999999999999943334445689999988853
No 12
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=4.6e-45 Score=428.55 Aligned_cols=420 Identities=14% Similarity=0.179 Sum_probs=282.1
Q ss_pred eeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 142 TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
.+++.+|+.+.|+|. ..+.|...+.|++++..+.....+. .+.+. ..+|.|.+++.+|+|.|+|.|.|..+.
T Consensus 57 ~~~v~~g~~~~L~c~-~~~~~~~~~~W~~~~~~l~~~~~~~----~~~r~---~~SL~I~~v~~~D~G~Y~C~~~n~~~~ 128 (527)
T 3qs9_E 57 AVEVDVSASITLQVL-VDAPGNISCLWVFKHSSLNCQPHFD----LQNRG---VVSMVILKMTETQAGEYLLFIQSEATN 128 (527)
T ss_dssp EEEECSSCCEEEEEE-CSCCSSCEEEEEETTEEECCCCBC---------C---EEEEEESSCCSSSCSEEEEEEEC--CE
T ss_pred eEEEeccccEEEEEE-EecCCceeEEEEecCCccCcccccC----CCcce---EEEEEECcCChhhCeeEEEEEEecccc
Confidence 678999999999999 6688889999999988765443331 12222 136999999999999999999998774
Q ss_pred ceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEE
Q psy17146 222 TYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIV 301 (1011)
Q Consensus 222 ~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~ 301 (1011)
. +..+.|.|. |........+
T Consensus 129 ~--~~~~~v~v~--~~~~~~~~~p-------------------------------------------------------- 148 (527)
T 3qs9_E 129 Y--TILFTVSIR--NTLLYTLRRP-------------------------------------------------------- 148 (527)
T ss_dssp E--EEEEEEEEC-------CEEEE--------------------------------------------------------
T ss_pred E--EEEEEEEEC--CceeeccCCC--------------------------------------------------------
Confidence 4 334444443 2211111100
Q ss_pred EEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCc----CccEEEEeecccccCCcEEEEEEEcCCc
Q psy17146 302 KCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----SATELYLTNITRHQHDSIVKCEVHNDVG 377 (1011)
Q Consensus 302 ~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~----~~~~L~I~~~~~~~d~G~Y~C~a~n~~g 377 (1011)
.....|+.+.|.|.+.|.|.| .++|++++..+.... .........+... |+|.|+|.|.|..|
T Consensus 149 -----------~~~~~~~~~~L~C~a~G~P~P-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~G~Y~C~A~N~~G 215 (527)
T 3qs9_E 149 -----------YFRKMENQDALVCISESVPEP-IVEWVLCDSQGESCKEESPAVVKKEEKVLHEL-FGTDIRCCARNELG 215 (527)
T ss_dssp -----------EEEECSSSSCEEEEEEESSCC-EEEEEEC-------------CEEECCSEECCC-CSSCEEEEEECSSC
T ss_pred -----------cEEecCCceEEEEEEceecCC-eEEEEECCCCCccccccCCcEEEEeeeecccc-CCEEEEEEEEeCCC
Confidence 011234455688888888876 888888776653211 1111122233444 99999999999999
Q ss_pred ccee-eEEEEEEecceEeeCCCceEecCCCcEEEEeecC-CCCCCceEEEeCCCceee---------------ccCCcEE
Q psy17146 378 KSED-SETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVV---------------GNSPNLT 440 (1011)
Q Consensus 378 ~~~~-s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~-g~p~p~v~W~k~~~~~~~---------------~~~~~L~ 440 (1011)
.... .+.|.|..+|.+ .|.+..+.+|+.+.|.|.+. |.|.+.|+|+|++..+.. .....|.
T Consensus 216 ~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~ 293 (527)
T 3qs9_E 216 RECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAF 293 (527)
T ss_dssp EEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEE
T ss_pred cccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEE
Confidence 8754 477888777776 66788999999999999996 999999999999864321 1224599
Q ss_pred EEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccC
Q psy17146 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS 520 (1011)
Q Consensus 441 I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~ 520 (1011)
|.+++.+|+|.|+|.|.|. .+..+.|.|.
T Consensus 294 I~~v~~~DsG~Y~C~a~N~----~~~~~~L~V~----------------------------------------------- 322 (527)
T 3qs9_E 294 VSSVARNDTGYYTCSSSKH----PSQSALVTIV----------------------------------------------- 322 (527)
T ss_dssp ESSCCGGGCEEEEEEETTE----EEEEEEEEEC-----------------------------------------------
T ss_pred EccCCcccCeEEEEEEEeC----CCceEEEEEE-----------------------------------------------
Confidence 9999999999999999865 3444444443
Q ss_pred CCceEEEcCCCCCcccEEEEEEecceeecCC--ceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec-----CCCcE
Q psy17146 521 SDDYSVHNDVGKSEDSETLDVTYGPRFRARP--YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG-----NSPNL 593 (1011)
Q Consensus 521 ~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p--~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~-----~~~~L 593 (1011)
.+|.+...+ ....+.+|+.+.|.|.+.|.|.|.++|+|+|..+... ....|
T Consensus 323 ----------------------~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L 380 (527)
T 3qs9_E 323 ----------------------EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSI 380 (527)
T ss_dssp ------------------------CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEE
T ss_pred ----------------------ccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEE
Confidence 333333322 3466788999999999999999999999998665432 35789
Q ss_pred EEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEeccc
Q psy17146 594 TLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG 673 (1011)
Q Consensus 594 ~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~ 673 (1011)
.|.++..+|+|.|+|.|.| ..+..+..+.|.|..+|.|..... | ..|.|.+.|.|.| .|+|++++......
T Consensus 381 ~I~~v~~~D~G~YtC~A~N-~~g~~~~~~~L~V~~~P~i~~~~~-----~--~~l~C~a~g~P~p-~i~W~~~~~~~~~~ 451 (527)
T 3qs9_E 381 SKFCNHKHQPGEYIFHAEN-DDAQFTKMFTLNIRRKPQVLAEAS-----A--SQASCFSDGYPLP-SWTWKKCSDKSPNC 451 (527)
T ss_dssp EEECCCTTCCSCEEEEEEE-TTEEEEEEEEEC--CCCEEEECCC-----C--E---EEEECSSCC-EEEEECCC-----C
T ss_pred EEecCCcccCEEEEEEEEe-CCCcEEEEEEEEEecCCeEEEeCC-----C--CEEEEEEEEEcCC-eEEEEECCCCcCCC
Confidence 9999999999999999999 677888899999999999875432 2 3589999999999 99999987654211
Q ss_pred CCC----CeEEecC-Cc--CccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 674 SSD----DYSVLED-PL--KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 674 ~~~----~~~~~~~-~~--~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
... .+..... .. .....+.|.|.+ .+|+|.|+|.|.|.+|.++..+.|.|.++
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~--~~d~G~Y~C~A~N~~G~~~~~~~L~V~~p 511 (527)
T 3qs9_E 452 TEEITEGVWNRKANRKVFGQWVSSSTLNMSE--AIKGFLVKCCAYNSLGTSCETILLNSPGP 511 (527)
T ss_dssp CCCCCCCEEEC---------CEEEEECCCCC--SSCSCEEEEEEECSSCEEEEEEEC-----
T ss_pred ccccccccceeccccccCCceEEEEEEEEEE--cCCCEEEEEEEEeCCCCceeEEEEecCCC
Confidence 110 0000000 00 011234455554 56999999999999999999999988654
No 13
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=1.1e-43 Score=427.58 Aligned_cols=464 Identities=15% Similarity=0.211 Sum_probs=327.5
Q ss_pred eecCCeeeecCCCcEEEEEEccCCCCCc---EEEEEeCCcee-----eeceeEEEeeecCCceEEE------EEEEEEee
Q psy17146 137 IVQGDTLYTTEDREIELECISANGKPPA---EITWIDGTGTV-----MSNVRVTEEASVDGRRTTV------KSTLVLTP 202 (1011)
Q Consensus 137 i~~~~~~~v~eg~~v~L~C~~~~g~P~~---~i~W~k~~~~l-----~~~~~~~~~~~~~~~~~~~------~~~L~I~~ 202 (1011)
+..++.+.+.+|+.+.|.|. +.+.|.+ .+.|+|++..+ .....+. .....+|.... ..+|.|.+
T Consensus 4 i~~P~~v~v~~G~~v~L~C~-~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~g~~~L~I~~ 81 (585)
T 2ocw_A 4 IFGPEEVNSVEGNSVSITCY-YPPTSVNRHTRKYWCRQGARGGCITLISSEGYV-SSKYAGRANLTNFPENGTFVVNIAQ 81 (585)
T ss_pred ccCcceeEEecCCcEEEEEe-CCCCcCCCcccEEEEeCCCCCCceEEEECCCcc-cceeeceEEEEecCCCCEEEEEECC
Confidence 33455778899999999999 6666643 89999988642 1110000 00111221111 25799999
Q ss_pred ccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCcc
Q psy17146 203 KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA 282 (1011)
Q Consensus 203 ~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~ 282 (1011)
++.+|+|.|+|.|.|..+.. +..+.|.|..+|.+. .......+.+|+.++|.|.+.+.++...+.|++++.....
T Consensus 82 v~~~D~G~Y~C~~~n~~~~~--~~~~~l~V~~~p~~~-~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~-- 156 (585)
T 2ocw_A 82 LSQDDSGRYKCGLGINSRGL--SFDVSLEVSQGPGLL-NDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPV-- 156 (585)
T ss_pred CCcccCEEEEEEcccCCCCc--eEEEEEEEecCcccc-CCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCce--
Confidence 99999999999999988765 566778887777653 2344456788888888888887766677888887643211
Q ss_pred ccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCC-ccEEEEEECCeecCCCcCccEEEEeeccc
Q psy17146 283 SATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPS-HMKYRWYINDQPVPAAASATELYLTNITR 361 (1011)
Q Consensus 283 ~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~~i~W~k~g~~l~~~~~~~~L~I~~~~~ 361 (1011)
.+..... ...+. .-.+....++. ......|.|.++..
T Consensus 157 -------------------------------~~~~~~~-------~~~~~~~~r~~~~~~~~----~~~~~~L~I~~v~~ 194 (585)
T 2ocw_A 157 -------------------------------LVIDSSG-------YVNPNYTGRIRLDIQGT----GQLLFSVVINQLRL 194 (585)
T ss_pred -------------------------------EEecCCc-------ccCccccCcEEEEeccC----CCcEEEEEEccCCh
Confidence 0000000 00000 00122221110 01234899999999
Q ss_pred ccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCC---CceEEE-eCCCc-------
Q psy17146 362 HQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPA---PEITWI-HEDSD------- 430 (1011)
Q Consensus 362 ~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~---p~v~W~-k~~~~------- 430 (1011)
+ |+|.|+|.|.|..|..+..+.|.|..+| |..+.+.+|+.+.|.|.+ +.|. +.+.|+ +++..
T Consensus 195 ~-D~G~Y~C~a~n~~g~~~~~~~l~V~~~~-----p~~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~ 267 (585)
T 2ocw_A 195 S-DAGQYLCQAGDDSNSNKKNADLQVLKPE-----PELVYEDLRGSVTFHCAL-GPEVANVAKFLCRQSSGENCDVVVNT 267 (585)
T ss_pred h-HCeEEEEEeccCCccccceEEEEEccCC-----CceeEEcCCCcEEEEEEc-CCCCCCceEEEEEeCCCCCcceEEeC
Confidence 8 9999999999999998889999997643 455678899999999998 4444 678886 77621
Q ss_pred ----------ee-ec---cCC--cEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEE
Q psy17146 431 ----------KV-VG---NSP--NLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARV 494 (1011)
Q Consensus 431 ----------~~-~~---~~~--~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l 494 (1011)
+. .. ..+ .|.|.+++.+|+|.|+|.|.|.+....
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~------------------------------ 317 (585)
T 2ocw_A 268 LGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQE------------------------------ 317 (585)
T ss_pred CCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccc------------------------------
Confidence 11 10 123 699999999999999999997432211
Q ss_pred EeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCC
Q psy17146 495 ECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP 574 (1011)
Q Consensus 495 ~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p 574 (1011)
+.....+.|.|..+|.+...|....+.+|+.++|.|.+.+.|.+
T Consensus 318 ------------------------------------~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p 361 (585)
T 2ocw_A 318 ------------------------------------GSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESK 361 (585)
T ss_pred ------------------------------------cCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCc
Confidence 01113445667777888888888999999999999999999999
Q ss_pred eE----EEEe--cCC--ceee---------------c---CCC--cEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 575 EI----TWIH--EDS--DKVV---------------G---NSP--NLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 575 ~v----~W~k--~~~--~~~~---------------~---~~~--~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
.+ .|+| +|. .+.. . .++ +|+|.++..+|+|.|+|.| | ..+..+..+.|.|
T Consensus 362 ~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n-~~g~~~~~~~l~V 439 (585)
T 2ocw_A 362 SIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-N-GDTLWRTTVEIKI 439 (585)
T ss_pred cEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-c-CCCccceeEEEEE
Confidence 87 7999 775 2211 0 123 3999999999999999999 7 5677888899999
Q ss_pred cC-CCeeecCCceeeecCCcEEEEEEEE----ecCCCCeEEEEECCeEecccCCCC----eEEecCCcCccceeEEEEcC
Q psy17146 627 KG-RPTIISHRTQFGIPGDTARVECSAF----SIPPPEKVTWSYRGEEIGVGSSDD----YSVLEDPLKEGIKSTLIIRE 697 (1011)
Q Consensus 627 ~~-~P~i~~~~~~~v~~G~~v~L~C~~~----g~p~p~~v~W~~~g~~l~~~~~~~----~~~~~~~~~~~~~~~L~I~~ 697 (1011)
.. +|.+..+....+.+|+.++|.|.+. |.|.| .|.|+|+|..+....... +.... ..+..+.|.|.+
T Consensus 440 ~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~-~v~W~k~g~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~ 515 (585)
T 2ocw_A 440 IEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKY-WCKWNNTGCQALPSQDEGPSKAFVNCD---ENSRLVSLTLNL 515 (585)
T ss_pred ecCccccccCCceeEecCCcEEEEEEecCCCCCCccE-EEEEeecCceeeeccCCCCCcceEEec---CcccEEEEEECC
Confidence 76 4666666778899999999999997 66778 899999999886432211 22211 134457999999
Q ss_pred CCCCCCEEEEEEEEcCCCCeE-EEEEEEecCC
Q psy17146 698 SRHDHFGVYNCSVSNPYGSDS-VEIMLKPQKS 728 (1011)
Q Consensus 698 ~~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~~~ 728 (1011)
+..+|+|.|+|.|.|..|... ..+.|.|...
T Consensus 516 v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~ 547 (585)
T 2ocw_A 516 VTRADEGWYWCGVKQGHFYGETAAVYVAVEER 547 (585)
T ss_pred CCcccCeEEEEEeEeCCCccEEEEEEEEEEee
Confidence 999999999999999999665 4488888643
No 14
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=3.2e-43 Score=417.33 Aligned_cols=468 Identities=16% Similarity=0.233 Sum_probs=302.7
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCc--------ccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPH--------RNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
+..+|.++.+.+|++|+|.|.+.+ +.+.+.|+|++...... ......+|+.+. ...+.++|+|.+++.+
T Consensus 3 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~~~ 80 (523)
T 2rcj_C 3 VLTQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGS--KSGTSASLAISGLEAE 80 (523)
T ss_pred ccccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEe--cCCCEEEEEECCCChh
Confidence 344678899999999999999987 56789999985221100 001123566643 3346678999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-CCCeee-cCCeeeecCCCcEEEEEEccCCCCC--cEEEEEeCCceee
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPP-DPPRIV-QGDTLYTTEDREIELECISANGKPP--AEITWIDGTGTVM 176 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W~k~~~~l~ 176 (1011)
|+|.|+|.+.+..+.. ...+..+.|+|...+ .+|.+. .+....+.+|+.+.|.|. +.|.|+ ++++|+|++..+.
T Consensus 81 D~G~Y~C~a~n~~g~~-~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~-~~g~~p~~~~v~W~k~g~~l~ 158 (523)
T 2rcj_C 81 DESDYYCASWNSSDNS-YVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCL-ISDFYPGAVTVAWKADGSPVK 158 (523)
T ss_pred hCEEEEEEEccCCCcc-ccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEE-eccccCCceEEEEecCCCCCC
Confidence 9999999999854321 123345778886432 334433 333445668999999999 556654 3999999998886
Q ss_pred eceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEE--EEEeCCceEEEecCcceeecCceE
Q psy17146 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKL--LVKYAPKVQVSVIGSNRLVEGTDV 254 (1011)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v--~v~~~P~~~~~~~~~~~v~~g~~v 254 (1011)
.+..+..........+...+.|.|.+++.+|+|.|+|.|.|..+.......+.+ .+..+|.+.. ...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~-~~~---------- 227 (523)
T 2rcj_C 159 AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFP-LAP---------- 227 (523)
T ss_pred CceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEe-cCC----------
Confidence 654443222223334455578999999999999999999999876533222111 1112232221 111
Q ss_pred EEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecC-CCc
Q psy17146 255 RLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEAN-PSH 333 (1011)
Q Consensus 255 ~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~ 333 (1011)
...+.+|+.++|.|.+.+. |.+
T Consensus 228 ---------------------------------------------------------~~~~~~G~~~~l~C~~~g~~P~p 250 (523)
T 2rcj_C 228 ---------------------------------------------------------SSKSTSGGTAALGCLVKDYFPQP 250 (523)
T ss_pred ---------------------------------------------------------CcccccCCceEEEEEEeceeCCC
Confidence 1223455566666666554 444
Q ss_pred cEEEEEECCeecCCC------------cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEe-eCCCce
Q psy17146 334 MKYRWYINDQPVPAA------------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFR-ARPYSV 400 (1011)
Q Consensus 334 ~~i~W~k~g~~l~~~------------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~-~~p~~~ 400 (1011)
+.+.|+|+|..+... .....|.|.++... | |.|+|.|.|..|.......|.|...|.+. ..|...
T Consensus 251 ~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~ 328 (523)
T 2rcj_C 251 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG-T-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPK 328 (523)
T ss_pred eEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcC-C-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCch
Confidence 456666666543210 01247999999987 8 99999999999988777788777777653 445444
Q ss_pred E-ecCCCcEEEEeecCCCCC----CceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCC
Q psy17146 401 Q-VDRGAGVNLLCDVDGNPA----PEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 475 (1011)
Q Consensus 401 ~-v~~G~~v~l~C~~~g~p~----p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~ 475 (1011)
. +.+|+.+.|.|.+.|.|+ +.|+|+|++..+....... ....+.|.|..
T Consensus 329 ~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~-----~~~~~~g~~~~--------------------- 382 (523)
T 2rcj_C 329 DTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKP-----REQQYNSTYRV--------------------- 382 (523)
T ss_pred hhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCC-----ceecCCCcEEE---------------------
Confidence 4 889999999999998754 4999999986542211000 00112222221
Q ss_pred CeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEE
Q psy17146 476 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQ 555 (1011)
Q Consensus 476 p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~ 555 (1011)
T Consensus 383 -------------------------------------------------------------------------------- 382 (523)
T 2rcj_C 383 -------------------------------------------------------------------------------- 382 (523)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEE----EcCCCe
Q psy17146 556 VDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVY----LKGRPT 631 (1011)
Q Consensus 556 v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~----V~~~P~ 631 (1011)
.+.|.|.++..+|+|.|+|+|.|. .+.......|. +..+|.
T Consensus 383 ----------------------------------~s~L~i~~~~~~d~G~Y~C~a~n~-~~~~~~~~~~~~~~~~~~~P~ 427 (523)
T 2rcj_C 383 ----------------------------------VSVLTVLHQNWLDGKEYKCKVSNK-ALPAPIEKTISKAKGQPREPQ 427 (523)
T ss_pred ----------------------------------EEEEEECHHHhcCCCeEEEEEeCC-CCCCceeEEEEcccCCCCCCE
Confidence 134778888999999999999984 33333344444 467787
Q ss_pred eec-CCceeeecCCcEEEEEEEEecCCC-CeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEE
Q psy17146 632 IIS-HRTQFGIPGDTARVECSAFSIPPP-EKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 632 i~~-~~~~~v~~G~~v~L~C~~~g~p~p-~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y 706 (1011)
+.. +.......|..++|.|.+.|.|+| ..|+|+|||+++............ ++ ..+.|.|......|.|.|
T Consensus 428 v~~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~----~gt~~~~~~l~v~~~~~~~~g~Y 503 (523)
T 2rcj_C 428 VYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDS----DGSFFLYSKLTVDKSRWQQGNVF 503 (523)
T ss_pred EEEeCCChHHccCCceEEEEEEEeeECCCCEEEEEECCEECCCeeeccceeCC----CCCEEEEEEEEEChHHccCCCeE
Confidence 663 222222334459999999997654 489999999998632211111111 22 235677777777889999
Q ss_pred EEEEEcCCCC
Q psy17146 707 NCSVSNPYGS 716 (1011)
Q Consensus 707 ~C~a~N~~G~ 716 (1011)
+|.|.|....
T Consensus 504 ~C~a~n~~l~ 513 (523)
T 2rcj_C 504 SCSVMHEALH 513 (523)
T ss_pred EEEEEcCCcC
Confidence 9999998753
No 15
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=8.6e-44 Score=413.86 Aligned_cols=427 Identities=18% Similarity=0.285 Sum_probs=288.5
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCCCCee-----EEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVL-----QWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v-----~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
++.++|.++.+.+|++++|.|.+.++.+.+ .|+|++..+.. . ...+|.|.+++. |+|
T Consensus 1 ~i~~~P~~~~v~~G~~v~L~C~~~gp~p~~~~~~~~w~k~~~~~~~-------~----------~~~~l~i~~v~~-d~g 62 (450)
T 1z7z_I 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPG-------N----------NRKVYELSNVQE-DSQ 62 (450)
T ss_dssp CCEEESSEEEEETTEEEEEEEECCSSCCCEEEECSSSCEEECCSST-------T----------TEEEEEEEEECS-CBC
T ss_pred CcccCCCceEEecCCcEEEEEEccCCCcccccccceeeecceEecC-------C----------CceEEEEEeccc-CCe
Confidence 367889999999999999999999988888 89998753310 1 223799999987 999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCc---EEEEEeCCceeeecee
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPA---EITWIDGTGTVMSNVR 180 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~---~i~W~k~~~~l~~~~~ 180 (1011)
|+|.+.+. .+..+..+.|+|..+|... ...+....+.+|+.+.|.|. +.+.|++ .++|+|++..+.....
T Consensus 63 -Y~C~a~~~----~~~~~~~~~l~V~~~P~~~-~~~~~~~~v~~G~~v~L~C~-~~g~~~~~~~~v~W~k~g~~l~~~~~ 135 (450)
T 1z7z_I 63 -PMCYSNCP----DGQSTAKTFLTVYWTPERV-ELAPLPSWQPVGKNLTLRCQ-VEGGAPRANLTVVLLRGEKELKREPA 135 (450)
T ss_dssp -CEEEEEET----TEEEEEECEEEEEBCCSEE-EECCCCSEECTTSEEEEEEE-EECCBCGGGEEEEEEETTEEEEEEEC
T ss_pred -eEEEEeCC----CCcceeEEEEEEEeCCCcc-eecCCCceEeeCCeEEEEEE-ecCCCCCcCcEEEEeeCCEEeecccc
Confidence 99999753 2345677889998865432 23334567889999999999 6677776 9999999887754321
Q ss_pred EEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCcee------EEEEEEEEEeCCceEEEecCcceeecCceE
Q psy17146 181 VTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYK------VARLKLLVKYAPKVQVSVIGSNRLVEGTDV 254 (1011)
Q Consensus 181 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~------s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v 254 (1011)
. ... ..+.|.|.++..+|+|.|+|.|.|..|.... +....+.+...|...........+.+|+.+
T Consensus 136 ~-----~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v 206 (450)
T 1z7z_I 136 V-----GEP----AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQG 206 (450)
T ss_dssp C-----TTT----EEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEE
T ss_pred c-----ccc----cceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcE
Confidence 1 111 1358999999999999999999998774321 122333343221111111112344555555
Q ss_pred EEEEEcccCCC--ccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCC
Q psy17146 255 RLYCKAEANPS--HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPS 332 (1011)
Q Consensus 255 ~L~C~~~~~~~--~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~ 332 (1011)
+|.|.+.+.++ .+.+.|++++..+..
T Consensus 207 ~l~C~~~g~~P~~~~~~~W~~~~~~~~~---------------------------------------------------- 234 (450)
T 1z7z_I 207 TVVCSLDGLFPVSEAQVHLALGDQRLNP---------------------------------------------------- 234 (450)
T ss_dssp EEEEEEESCTTGGGCEEEEEETTEECCC----------------------------------------------------
T ss_pred EEEEEeeCCCCCCceEEEEeCCCEeCCc----------------------------------------------------
Confidence 55555555522 344555544433211
Q ss_pred ccEEEEEECCeecCCCcCccEEEEeecccccCCc--EEEEEEEcCCccceeeEEEEEEe--cceEeeCCCceEecCCCcE
Q psy17146 333 HMKYRWYINDQPVPAAASATELYLTNITRHQHDS--IVKCEVHNDVGKSEDSETLDVTY--GPRFRARPYSVQVDRGAGV 408 (1011)
Q Consensus 333 ~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G--~Y~C~a~n~~g~~~~s~~l~V~~--~P~~~~~p~~~~v~~G~~v 408 (1011)
.+.|..++ ....+.+ ++..+ |+| .|+|.|.|..|..+..+.|.|.. +|.+... +..+.+|+.+
T Consensus 235 --~~~~~~~~-------~~~~~~~-~v~~~-d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~--~~~v~~G~~v 301 (450)
T 1z7z_I 235 --TVTYGNDS-------FSAKASV-SVTAE-DEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT--KPEVSEGTEV 301 (450)
T ss_dssp --EEEEETTE-------EEEEEEE-ECCGG-GCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEES--CSEEETTCEE
T ss_pred --eEEecCCc-------eeEEEEE-EeEhh-hCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecC--CeeEeCCCcE
Confidence 11111110 0011122 66776 999 99999999999988899999988 5555543 4589999999
Q ss_pred EEEeecCCCCCCceEEEeCCCce-eeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCccccc
Q psy17146 409 NLLCDVDGNPAPEITWIHEDSDK-VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGI 487 (1011)
Q Consensus 409 ~l~C~~~g~p~p~v~W~k~~~~~-~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~ 487 (1011)
+|.|.+. |.|.++| ++... .......|.|.++..+|+|.|+|.|.|..++...
T Consensus 302 ~l~C~~~--p~p~i~W--~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~---------------------- 355 (450)
T 1z7z_I 302 TVKCEAH--PRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLI---------------------- 355 (450)
T ss_dssp EEEEEC--------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEE----------------------
T ss_pred EEEEecC--CCCEeEE--CCEEcCCCCceEEEEEecCcccCCceEEEEEEcCCCCccc----------------------
Confidence 9999998 8999999 65544 2345568999999999999999999963222111
Q ss_pred CCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCC--ceEEEcCCCcEEEE
Q psy17146 488 PGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARP--YSVQVDRGAGVNLL 565 (1011)
Q Consensus 488 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p--~~~~v~~G~~~~l~ 565 (1011)
....++.|.|..+|.+...+ .+..+.+|+.++|.
T Consensus 356 --------------------------------------------~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~ 391 (450)
T 1z7z_I 356 --------------------------------------------HKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 391 (450)
T ss_dssp --------------------------------------------EEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCC
T ss_pred --------------------------------------------ccceeEEEEEecCCceeeccCCCceeEcCCCeEEEE
Confidence 01123345666777776654 67889999999999
Q ss_pred EEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCC
Q psy17146 566 CDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 629 (1011)
Q Consensus 566 C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 629 (1011)
|.+.|.|.|.+.|+|++.... ..+..| ++..+|+|.|+|.|.| ..|..+..+.|.|..+
T Consensus 392 C~~~g~P~p~i~W~~~g~~~~-~~g~~~---~v~~~d~G~Y~C~a~N-~~G~~~~~~~l~V~~~ 450 (450)
T 1z7z_I 392 CQAWGNPLPELKCLKDGTFPL-PIGESV---TVTRDLEGTYLCRARS-TQGEVTREVTVNVLSP 450 (450)
T ss_dssp CCCEEESCCEEEEEETTTEEC-CTTSCE---ECCGGGCEEEEEEEEE-TTEEEEEEEEEEEECC
T ss_pred EecccCCCCcEEEEECCcccC-CCCCeE---eEehhhCeEEEEEEEe-CCCceeEEEEEEEEcC
Confidence 999999999999999997332 223333 6889999999999999 6889999999998754
No 16
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=4.7e-44 Score=420.04 Aligned_cols=437 Identities=14% Similarity=0.164 Sum_probs=276.3
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
...++..++|.+|++++|.|.+.++ ...+.|++++..+.....+.... .+..+|.|.+|+.+|+|.|+|.
T Consensus 51 ~~~~~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~---------r~~~SL~I~~v~~~D~G~Y~C~ 121 (527)
T 3qs9_E 51 TVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQN---------RGVVSMVILKMTETQAGEYLLF 121 (527)
T ss_dssp -----CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC--------------CEEEEEESSCCSSSCSEEEEE
T ss_pred ceeeeeeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCCCc---------ceEEEEEECcCChhhCeeEEEE
Confidence 3445558999999999999999875 46899999998764333232222 2345799999999999999999
Q ss_pred EEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecC
Q psy17146 109 VSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD 188 (1011)
Q Consensus 109 ~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~ 188 (1011)
+.+.. + ...+.++|.+.+...... ........|+.+.|.|. +.|+|.|.|+|++++..+..... ...
T Consensus 122 ~~n~~----~--~~~~~~~v~v~~~~~~~~-~~p~~~~~~~~~~L~C~-a~G~P~P~i~W~~~~~~~~~~~~-----~~~ 188 (527)
T 3qs9_E 122 IQSEA----T--NYTILFTVSIRNTLLYTL-RRPYFRKMENQDALVCI-SESVPEPIVEWVLCDSQGESCKE-----ESP 188 (527)
T ss_dssp EEC------C--EEEEEEEEEEC-----CE-EEEEEEECSSSSCEEEE-EEESSCCEEEEEEC-----------------
T ss_pred EEecc----c--cEEEEEEEEECCceeecc-CCCcEEecCCceEEEEE-EceecCCeEEEEECCCCCccccc-----cCC
Confidence 98753 2 223444554443322211 22333456777899999 78999999999998765432110 000
Q ss_pred CceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccE
Q psy17146 189 GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMK 268 (1011)
Q Consensus 189 ~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~ 268 (1011)
. .-......+..+|+|.|+|.|.|..|... +..+.|.|...|.. .+....+.+|+.+.|.|.+....+.+.
T Consensus 189 ~-----~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~-~~~~~l~V~~~p~~---~p~~~~v~~G~~v~L~C~~~~g~p~p~ 259 (527)
T 3qs9_E 189 A-----VVKKEEKVLHELFGTDIRCCARNELGREC-TRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFG 259 (527)
T ss_dssp ------CEEECCSEECCCCSSCEEEEEECSSCEEE-EECEEEESSSCCCC---SCCEEEECTTSCEEEEEEEEESSSCCC
T ss_pred c-----EEEEeeeeccccCCEEEEEEEEeCCCccc-ceEEEEEEeccCcc---CCCceEEeCCCeEEEEEEEccCCCCeE
Confidence 0 01222334568999999999999988763 23466777666654 233445667777777777763333466
Q ss_pred EEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC
Q psy17146 269 YRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA 348 (1011)
Q Consensus 269 i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~ 348 (1011)
++|++++..+..... ....-+..+...
T Consensus 260 i~W~k~g~~l~~~~~--------------------------------------------------~~~~~~~~~~~~--- 286 (527)
T 3qs9_E 260 LTWELENKALEEGNY--------------------------------------------------FEMSTYSTNRTM--- 286 (527)
T ss_dssp EEEECSSSCCCGGGE--------------------------------------------------EEEEEEETTTEE---
T ss_pred EEEEECCEECCCCce--------------------------------------------------eeeeeeccCcce---
Confidence 777777665432210 000001111000
Q ss_pred cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCC--CceEecCCCcEEEEeecCCCCCCceEEEe
Q psy17146 349 ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARP--YSVQVDRGAGVNLLCDVDGNPAPEITWIH 426 (1011)
Q Consensus 349 ~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p--~~~~v~~G~~v~l~C~~~g~p~p~v~W~k 426 (1011)
.....|.|.++..+ |+|.|+|.|.|. .+.++.|.|..+|.+...+ ....+.+|+.+.|.|.+.|+|.|.|+|+|
T Consensus 287 ~~~~~L~I~~v~~~-DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k 362 (527)
T 3qs9_E 287 IRILFAFVSSVARN-DTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF 362 (527)
T ss_dssp EEEEEEEESSCCGG-GCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEE
T ss_pred eeEEEEEEccCCcc-cCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEE
Confidence 12356999999998 999999999987 6778889999888876654 35678899999999999999999999999
Q ss_pred CCCceeec-----cCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeC
Q psy17146 427 EDSDKVVG-----NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI 501 (1011)
Q Consensus 427 ~~~~~~~~-----~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~ 501 (1011)
++..+... ....|.|.+++.+|+|.|+|.|.|..
T Consensus 363 ~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~----------------------------------------- 401 (527)
T 3qs9_E 363 SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD----------------------------------------- 401 (527)
T ss_dssp TTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETT-----------------------------------------
T ss_pred CCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCC-----------------------------------------
Confidence 98655322 35679999999999999999999743
Q ss_pred CCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEec
Q psy17146 502 PPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE 581 (1011)
Q Consensus 502 ~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~ 581 (1011)
|....++.|.|..+|.|...+. ...|.|.+.|.|.|.+.|+++
T Consensus 402 -----------------------------g~~~~~~~L~V~~~P~i~~~~~--------~~~l~C~a~g~P~p~i~W~~~ 444 (527)
T 3qs9_E 402 -----------------------------AQFTKMFTLNIRRKPQVLAEAS--------ASQASCFSDGYPLPSWTWKKC 444 (527)
T ss_dssp -----------------------------EEEEEEEEEC--CCCEEEECCC--------CE---EEEECSSCCEEEEECC
T ss_pred -----------------------------CcEEEEEEEEEecCCeEEEeCC--------CCEEEEEEEEEcCCeEEEEEC
Confidence 3333344455556666655442 235799999999999999987
Q ss_pred CCceee--------------------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee
Q psy17146 582 DSDKVV--------------------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII 633 (1011)
Q Consensus 582 ~~~~~~--------------------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~ 633 (1011)
+..... .....++|.....+|+|.|+|.|.| ..|..+..+.|.|..+-.+.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N-~~G~~~~~~~L~V~~p~~~~ 515 (527)
T 3qs9_E 445 SDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYN-SLGTSCETILLNSPGPFPFI 515 (527)
T ss_dssp C-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEEC-SSCEEEEEEEC---------
T ss_pred CCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEe-CCCCceeEEEEecCCCceec
Confidence 643210 0011233333345799999999999 68899999999887764443
No 17
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=1.2e-42 Score=404.32 Aligned_cols=402 Identities=14% Similarity=0.192 Sum_probs=273.1
Q ss_pred CCeeeecCCCcEEEEEEccCCCCCcEE-----EEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEE
Q psy17146 140 GDTLYTTEDREIELECISANGKPPAEI-----TWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQ 214 (1011)
Q Consensus 140 ~~~~~v~eg~~v~L~C~~~~g~P~~~i-----~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 214 (1011)
++.+.+.+|+.+.|.|. +.+ |.+.+ .|+|++..+. +.+ ...|.|.+++. |+| |+|.
T Consensus 6 P~~~~v~~G~~v~L~C~-~~g-p~p~~~~~~~~w~k~~~~~~-----------~~~----~~~l~i~~v~~-d~g-Y~C~ 66 (450)
T 1z7z_I 6 PSKVILPRGGSVLVTCS-TSC-DQPMLLGIETPLPKKELLLP-----------GNN----RKVYELSNVQE-DSQ-PMCY 66 (450)
T ss_dssp SSEEEEETTEEEEEEEE-CCS-SCCCEEEECSSSCEEECCSS-----------TTT----EEEEEEEEECS-CBC-CEEE
T ss_pred CCceEEecCCcEEEEEE-ccC-CCcccccccceeeecceEec-----------CCC----ceEEEEEeccc-CCe-eEEE
Confidence 45677889999999999 667 88888 8998755331 111 13799999987 999 9999
Q ss_pred EEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeec
Q psy17146 215 AQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITR 294 (1011)
Q Consensus 215 a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~ 294 (1011)
|.+..+. .+..+.|.|..+|......+.+..+.+|+.++|.|.+.+.+++.
T Consensus 67 a~~~~~~--~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~--------------------------- 117 (450)
T 1z7z_I 67 SNCPDGQ--STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRA--------------------------- 117 (450)
T ss_dssp EEETTEE--EEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGG---------------------------
T ss_pred EeCCCCc--ceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCc---------------------------
Confidence 9765443 35566777777776543333334445555555555555444322
Q ss_pred ccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC-----cCccEEEEeecccccCCcEEE
Q psy17146 295 HQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-----ASATELYLTNITRHQHDSIVK 369 (1011)
Q Consensus 295 ~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~-----~~~~~L~I~~~~~~~d~G~Y~ 369 (1011)
.+.+.|+|+|..+... .....|.|.++... |+|.|+
T Consensus 118 --------------------------------------~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~ 158 (450)
T 1z7z_I 118 --------------------------------------NLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDH-HGANFS 158 (450)
T ss_dssp --------------------------------------GEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSC-SSCEEE
T ss_pred --------------------------------------CcEEEEeeCCEEeecccccccccceEEEEEeeccc-cCceEE
Confidence 0145555555544321 23458999888876 999999
Q ss_pred EEEEcCCccce--------eeEEEEEEec----ceEeeCCCceEecCCCcEEEEeecCCC-C--CCceEEEeCCCcee--
Q psy17146 370 CEVHNDVGKSE--------DSETLDVTYG----PRFRARPYSVQVDRGAGVNLLCDVDGN-P--APEITWIHEDSDKV-- 432 (1011)
Q Consensus 370 C~a~n~~g~~~--------~s~~l~V~~~----P~~~~~p~~~~v~~G~~v~l~C~~~g~-p--~p~v~W~k~~~~~~-- 432 (1011)
|.|.|..|... ....|.|... |.+.. ...+.+|+.+.|.|.+.|. | .+.+.|++++....
T Consensus 159 C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~~ 235 (450)
T 1z7z_I 159 CRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT 235 (450)
T ss_dssp EEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCCE
T ss_pred EEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCce
Confidence 99999877543 3344555432 22221 1678999999999999998 7 78999999985432
Q ss_pred -eccCCcEEEE---eeccCCCe--EEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCe
Q psy17146 433 -VGNSPNLTLL---MTSDDLAG--RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEK 506 (1011)
Q Consensus 433 -~~~~~~L~I~---~v~~~d~G--~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 506 (1011)
......+.+. +++.+|+| .|+|.|.|..+ .....+.|
T Consensus 236 ~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g-~~~~~~~l------------------------------------ 278 (450)
T 1z7z_I 236 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ-SQETLQTV------------------------------------ 278 (450)
T ss_dssp EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTE-EEEEEEEE------------------------------------
T ss_pred EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCc-cEEEEEEE------------------------------------
Confidence 1112233332 67899999 99999997532 22223333
Q ss_pred eEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEe--cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc
Q psy17146 507 VTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTY--GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD 584 (1011)
Q Consensus 507 v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~--~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~ 584 (1011)
.|.. +|.+.. .+..+.+|+.++|.|.+. |.|.++| +|..
T Consensus 279 ---------------------------------~V~~~~~p~i~~--~~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~ 319 (450)
T 1z7z_I 279 ---------------------------------TIYSFPAPNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVP 319 (450)
T ss_dssp ---------------------------------EEECCCCCEEEE--SCSEEETTCEEEEEEEC----------------
T ss_pred ---------------------------------EEecCCCCeEec--CCeeEeCCCcEEEEEecC--CCCEeEE--CCEE
Confidence 3332 233322 234788999999999998 8899999 6655
Q ss_pred e-eecCCCcEEEeecCCCCCEEEEEEEEecCCCc---eeeEEEEEEcCCCeeecC---CceeeecCCcEEEEEEEEecCC
Q psy17146 585 K-VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPE---VGAEATVYLKGRPTIISH---RTQFGIPGDTARVECSAFSIPP 657 (1011)
Q Consensus 585 ~-~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~---~s~~~~l~V~~~P~i~~~---~~~~v~~G~~v~L~C~~~g~p~ 657 (1011)
+ .......|.|.++..+|+|.|+|.|.|...+. .+..+.|.|..+|.+... ....+.+|+.++|.|.+.|.|.
T Consensus 320 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~ 399 (450)
T 1z7z_I 320 AQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPL 399 (450)
T ss_dssp ----CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESC
T ss_pred cCCCCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCC
Confidence 5 33455789999999999999999999743433 347889999999998743 4668999999999999999999
Q ss_pred CCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 658 PEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 658 p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
| .|+|+|+|..+.. . + ..+ ++..+|+|.|+|.|.|.+|.++..+.|.|..
T Consensus 400 p-~i~W~~~g~~~~~--~------------g--~~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 449 (450)
T 1z7z_I 400 P-ELKCLKDGTFPLP--I------------G--ESV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449 (450)
T ss_dssp C-EEEEEETTTEECC--T------------T--SCE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred C-cEEEEECCcccCC--C------------C--CeE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence 9 9999999985432 1 1 122 5778999999999999999999999999853
No 18
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=9.1e-40 Score=374.12 Aligned_cols=343 Identities=24% Similarity=0.364 Sum_probs=279.1
Q ss_pred eCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC-------cCccEEEEeec-----ccccCCcEEEEEEEcCCc
Q psy17146 310 IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-------ASATELYLTNI-----TRHQHDSIVKCEVHNDVG 377 (1011)
Q Consensus 310 ~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~-------~~~~~L~I~~~-----~~~~d~G~Y~C~a~n~~g 377 (1011)
+.+..+.+|+.++|.|.+.+..+...+.|+|+|..+... .....|.|.++ +.+ |+|.|+|.|.|..+
T Consensus 28 P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~-D~G~Y~C~~~~~~~ 106 (403)
T 3laf_A 28 PSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKP-DEGLYQCEASLGDS 106 (403)
T ss_dssp CCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCS-SCEEEEEEEECGGG
T ss_pred CCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCC-cceEEEEEEEeCCC
Confidence 456789999999999999885433489999999998643 23456888777 555 99999999996543
Q ss_pred cc--eeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce---------eeccCCcEEEEeecc
Q psy17146 378 KS--EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK---------VVGNSPNLTLLMTSD 446 (1011)
Q Consensus 378 ~~--~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~---------~~~~~~~L~I~~v~~ 446 (1011)
.. +..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+|++... .....+.|.|.+++.
T Consensus 107 ~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 186 (403)
T 3laf_A 107 GSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQP 186 (403)
T ss_dssp CEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCG
T ss_pred ccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCceEEEccccc
Confidence 32 5677888888889988888999999999999999999999999999998654 234467899999999
Q ss_pred CCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEE
Q psy17146 447 DLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV 526 (1011)
Q Consensus 447 ~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~ 526 (1011)
+|+|.|+|.|.|..+...+..+.+.+...|.+.
T Consensus 187 ~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~----------------------------------------------- 219 (403)
T 3laf_A 187 GDSGVYRCSARNPASTRTGNEAEVRILSDPGLH----------------------------------------------- 219 (403)
T ss_dssp GGCEEEEEEEECSSCCCBCCCEEEEEECCCCCC-----------------------------------------------
T ss_pred ccCEEEEEEEEcCCCceeccceeEEEecCCCcc-----------------------------------------------
Confidence 999999999998654444444444443322210
Q ss_pred EcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecC
Q psy17146 527 HNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTS 599 (1011)
Q Consensus 527 ~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~ 599 (1011)
.++.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+. ...++.|.|.++.
T Consensus 220 ----------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 283 (403)
T 3laf_A 220 ----------------RQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVT 283 (403)
T ss_dssp ----------------EEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCC
T ss_pred ----------------cCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCC
Confidence 11234455667888999999999999999999999999885432 2345789999999
Q ss_pred CCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCe
Q psy17146 600 DDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY 678 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~ 678 (1011)
.+|+|.|+|.|.| ..+..+..+.|.|..+|.+. .+....+.+|+.++|.|.+.|.|.| .+.|+++|..+. ...++
T Consensus 284 ~~d~G~Y~C~a~n-~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~g~~~~--~~~~~ 359 (403)
T 3laf_A 284 DDDSGTYTCVVTY-KNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVP-TVNWMKNGDVVI--PSDYF 359 (403)
T ss_dssp GGGCEEEEEEEEE-TTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCC-EEEEEETTEECC--CSSSE
T ss_pred HHHCEEEEEEEEc-CCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCC-EEEEEECCEECC--CCCcE
Confidence 9999999999999 57788999999999999887 4566778999999999999999999 999999999986 34455
Q ss_pred EEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 679 SVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 679 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.+.. .+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 360 ~~~~-------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 401 (403)
T 3laf_A 360 QIVG-------GSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401 (403)
T ss_dssp EEET-------TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCC
T ss_pred EEec-------CccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeC
Confidence 5543 26899999999999999999999999999999999864
No 19
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=2.3e-39 Score=367.64 Aligned_cols=335 Identities=23% Similarity=0.352 Sum_probs=263.2
Q ss_pred ccCCcEEEEEEeecCCCccEEEEEECCeecCCCc------CccEEEEeec-ccccCCcEEEEEEEcCCccc-eeeEEEEE
Q psy17146 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------SATELYLTNI-TRHQHDSIVKCEVHNDVGKS-EDSETLDV 387 (1011)
Q Consensus 316 ~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~------~~~~L~I~~~-~~~~d~G~Y~C~a~n~~g~~-~~s~~l~V 387 (1011)
.+|+.+.|.|.+.|.|.| .++|+|||..+.... ....|.|.+. ..+ |+|.|+|.|.|..|.. +..+.|.|
T Consensus 21 ~eg~~v~L~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~-D~G~Y~C~A~N~~G~~~s~~~~l~v 98 (384)
T 3kld_A 21 SEEKKVKLSCEVKGNPKP-HIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQ-DAGTYQCIATNSFGTIVSREAKLQF 98 (384)
T ss_dssp CSCSEEEECCEEEEESCC-EEEEEETTEECCC----CEEEETTEEEEESCCHHH-HCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCCCeEEEEeEecCCCCC-EEEEEECCEECcCCCCccEEEECCEEEEcCCCCcc-cCEEEEEEEEcCcccEEecceEEEE
Confidence 589999999999999987 999999999986531 2456778776 555 9999999999999975 46778888
Q ss_pred EecceEeeC-CCceEecCCCcEEEEeecC-CCCCCceEEEeCCCce-------eeccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 388 TYGPRFRAR-PYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDK-------VVGNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 388 ~~~P~~~~~-p~~~~v~~G~~v~l~C~~~-g~p~p~v~W~k~~~~~-------~~~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
...+.+... +....+.+|+.+.|.|... +.|.+.+.|++++... .....+.|.|.+++.+|+|.|+|.|.|
T Consensus 99 ~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 178 (384)
T 3kld_A 99 AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTN 178 (384)
T ss_dssp EEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEE
T ss_pred ecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEec
Confidence 776665543 3557899999999999874 5677899999987432 233467899999999999999999998
Q ss_pred cCCccee--eEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCccc
Q psy17146 459 MGFPEVG--AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDS 536 (1011)
Q Consensus 459 ~~~~~~s--~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~ 536 (1011)
..+.... ....+.+. ..
T Consensus 179 ~~~~~~~~~~~~~~~v~------------------------~~------------------------------------- 197 (384)
T 3kld_A 179 TVTNHKVLGPPTPLILR------------------------ND------------------------------------- 197 (384)
T ss_dssp TTTTEEEECCCEEEEEE------------------------EE-------------------------------------
T ss_pred ccccceeeCCceEEEEc------------------------cC-------------------------------------
Confidence 5432110 00001000 00
Q ss_pred EEEEEEecceee-cCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCce------eecCCCcEEEeecCCCCCEEEEEE
Q psy17146 537 ETLDVTYGPRFR-ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK------VVGNSPNLTLLMTSDDLAGRYYCK 609 (1011)
Q Consensus 537 ~~l~V~~~P~~~-~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~d~G~Y~C~ 609 (1011)
.+.....|.+. ..|....+.+|+.+.|.|.+.|.|.|.+.|+|++... ....++.|.|.+++.+|+|.|+|.
T Consensus 198 -~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 276 (384)
T 3kld_A 198 -GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECV 276 (384)
T ss_dssp -EECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred -CcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEE
Confidence 00001223332 3466788999999999999999999999999965422 233467899999999999999999
Q ss_pred EEecCCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcc
Q psy17146 610 ASVMGFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688 (1011)
Q Consensus 610 a~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~ 688 (1011)
|.| ..|.....+.|.|..+|.+. .+.+..+..|+.+.|.|.+.|.|.| .|+|+|||.++. ...++.+..
T Consensus 277 a~N-~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~i~W~k~g~~l~--~~~~~~~~~------ 346 (384)
T 3kld_A 277 AEN-SRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKP-TYRWLKNGDPLL--TRDRIQIEQ------ 346 (384)
T ss_dssp EEE-TTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCC-EEEEEETTEECC--CBTTEEEET------
T ss_pred EEc-CCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCC-eEEEEECCEECC--CCccEEEeC------
Confidence 999 67788888999999999887 4567789999999999999999999 999999999987 345565533
Q ss_pred ceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 689 ~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
++|.|.++..+|+|.|+|.|.|.+|....++.|.|.
T Consensus 347 --~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 347 --GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp --TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred --CEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence 589999999999999999999999999999999884
No 20
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=7.8e-40 Score=374.07 Aligned_cols=378 Identities=12% Similarity=0.144 Sum_probs=227.1
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEE---------EEEEc-CCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEE
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFAT---------LTVLV-PPDPPRIVQGDTLYTTEDREIELECISANGKPPAEIT 167 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~---------l~V~~-~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~ 167 (1011)
+..|.|.|+|...+...+.......... |+... ++.+..+..+..+++.+|+.+.|.|. +.+.|.+.|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~-v~g~P~p~i~ 81 (423)
T 3qs7_E 3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVL-VDAPGNISCL 81 (423)
T ss_dssp -----------------------------------------------------CEEEECSSCCEEEEEE-CSCCSSCEEE
T ss_pred ccCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEE-EEcCCCCeEE
Confidence 3468899999987653332111111111 21122 12233344455889999999999999 7789999999
Q ss_pred EEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcce
Q psy17146 168 WIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNR 247 (1011)
Q Consensus 168 W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~ 247 (1011)
|++++..+.....+ ..+.+. ...|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+.... +.
T Consensus 82 W~~~~~~l~~~~~~----~~~~~~---~~sL~I~~v~~~D~G~Y~C~a~N~~g~~--~~~~~l~V~~~p~~~~~~--p~- 149 (423)
T 3qs7_E 82 WVFKHSSLNCQPHF----DLQNRG---VVSMVILKMTETQAGEYLLFIQSEATNY--TILFTVSIRNTLLYTLRR--PY- 149 (423)
T ss_dssp EEETTEEECCCCBC---------C---EEEEEESSCCSSSCSEEEEEEEC--CEE--EEEEEEEEC-----CEEE--EE-
T ss_pred EEECCCccCcccee----ccccce---EEEEEEeecCcccCEEEEEEEEcCCCcE--EEEEEEEEecCccccccC--Cc-
Confidence 99998776442221 111111 2369999999999999999999998865 455666666544331111 01
Q ss_pred eecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEe
Q psy17146 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKA 327 (1011)
Q Consensus 248 v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~ 327 (1011)
.+..|+.+.|.|.+
T Consensus 150 ------------------------------------------------------------------~~~~~~~~~L~C~a 163 (423)
T 3qs7_E 150 ------------------------------------------------------------------FRKMENQDALVCIS 163 (423)
T ss_dssp ------------------------------------------------------------------EEECSSSSCEEEEE
T ss_pred ------------------------------------------------------------------EeccCCceEEEEEE
Confidence 12234555677777
Q ss_pred ecCCCccEEEEEECCeecCCCcC---ccEEEEeecccccCCcEEEEEEEcCCccce-eeEEEEEEecceEeeCCCceEec
Q psy17146 328 EANPSHMKYRWYINDQPVPAAAS---ATELYLTNITRHQHDSIVKCEVHNDVGKSE-DSETLDVTYGPRFRARPYSVQVD 403 (1011)
Q Consensus 328 ~~~p~~~~i~W~k~g~~l~~~~~---~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~-~s~~l~V~~~P~~~~~p~~~~v~ 403 (1011)
.|.|.| .++|+|++..+..... ...+....+....|+|.|+|.|.|..|... ..+.|.|..+|.+ .+.+..+.
T Consensus 164 ~G~P~P-~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~~~~v~ 240 (423)
T 3qs7_E 164 ESVPEP-IVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLK 240 (423)
T ss_dssp EESSCC-EEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS--STTEEEEE
T ss_pred eeecCC-eEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc--CCCceEEe
Confidence 777766 7777777765432100 011111111123499999999999999764 3466777666654 45578899
Q ss_pred CCCcEEEEeecCC-CCCCceEEEeCCCceee---------------ccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeE
Q psy17146 404 RGAGVNLLCDVDG-NPAPEITWIHEDSDKVV---------------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 467 (1011)
Q Consensus 404 ~G~~v~l~C~~~g-~p~p~v~W~k~~~~~~~---------------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 467 (1011)
+|+.+.|.|.+.| .|.+.++|+|++..+.. .....|.|.+++.+|+|.|+|.|.|. .+..
T Consensus 241 ~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~----~~~~ 316 (423)
T 3qs7_E 241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH----PSQS 316 (423)
T ss_dssp TTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE----EEEE
T ss_pred CCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC----CCce
Confidence 9999999999998 77799999999865321 11236999999999999999999865 3344
Q ss_pred EEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEeccee
Q psy17146 468 ATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF 547 (1011)
Q Consensus 468 ~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~ 547 (1011)
+.|. |..+|.+
T Consensus 317 ~~L~---------------------------------------------------------------------V~~~p~i 327 (423)
T 3qs7_E 317 ALVT---------------------------------------------------------------------IVEKGFI 327 (423)
T ss_dssp EEEE---------------------------------------------------------------------EESSCEE
T ss_pred EEEE---------------------------------------------------------------------EEeCCcc
Confidence 4444 4444444
Q ss_pred ecCC--ceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecC-----CCcEEEeecCCCCCEEEEEEEEecCCCceee
Q psy17146 548 RARP--YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN-----SPNLTLLMTSDDLAGRYYCKASVMGFPEVGA 620 (1011)
Q Consensus 548 ~~~p--~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~-----~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~ 620 (1011)
...+ ..+.+.+|+++.|.|.+.|.|.|.++|+|+|..+.... ...+.+.....+|+|.|+|.|.| ..|..+.
T Consensus 328 ~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N-~~G~~~~ 406 (423)
T 3qs7_E 328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAEN-DDAQFTK 406 (423)
T ss_dssp EEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEE-TTEEEEE
T ss_pred eEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccccCCcEEEEEecccccCEEEEEEEEc-CCceEEE
Confidence 3333 35668899999999999999999999999997765443 23333477788999999999999 7889999
Q ss_pred EEEEEEcCCCe
Q psy17146 621 EATVYLKGRPT 631 (1011)
Q Consensus 621 ~~~l~V~~~P~ 631 (1011)
++.|.|..+|.
T Consensus 407 s~~L~v~~~p~ 417 (423)
T 3qs7_E 407 MFTLNIRSGTK 417 (423)
T ss_dssp EEEEC------
T ss_pred EEEEEEecCCc
Confidence 99999987764
No 21
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=3.9e-39 Score=368.27 Aligned_cols=323 Identities=12% Similarity=0.101 Sum_probs=237.3
Q ss_pred CcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC-------cCccEEEEeecccccCCcEEEEEEEcCCccceeeEE
Q psy17146 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSET 384 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~-------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 384 (1011)
+..+.+|+++.|.|.+.+.|.+ .+.|++++..+... .....|.|.+++.+ |+|.|+|.|.|..|..+..+.
T Consensus 57 ~v~V~~G~~v~L~C~v~g~P~p-~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~-D~G~Y~C~a~N~~g~~~~~~~ 134 (423)
T 3qs7_E 57 AVEVDVSASITLQVLVDAPGNI-SCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTET-QAGEYLLFIQSEATNYTILFT 134 (423)
T ss_dssp EEEECSSCCEEEEEECSCCSSC-EEEEEETTEEECCCCBC-----CEEEEEESSCCSS-SCSEEEEEEEC--CEEEEEEE
T ss_pred cEEEecCCcEEEEEEEEcCCCC-eEEEEECCCccCccceeccccceEEEEEEeecCcc-cCEEEEEEEEcCCCcEEEEEE
Confidence 4678999999999999997775 89999999876542 11246999999997 999999999999998888888
Q ss_pred EEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceeec---cCCc-EEE-EeeccCCCeEEEEEEEEc
Q psy17146 385 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG---NSPN-LTL-LMTSDDLAGRYYCKASVM 459 (1011)
Q Consensus 385 l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~---~~~~-L~I-~~v~~~d~G~Y~C~a~n~ 459 (1011)
|.|..+|.+.. .....+..|+.+.|.|.+.|+|.|.|+|+|++...... .... +.. ..+..+|+|.|+|.|.|.
T Consensus 135 l~V~~~p~~~~-~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~ 213 (423)
T 3qs7_E 135 VSIRNTLLYTL-RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNE 213 (423)
T ss_dssp EEEC-----CE-EEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECS
T ss_pred EEEecCccccc-cCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcC
Confidence 99987665531 12234566888999999999999999999987533110 0000 111 112678999999999986
Q ss_pred CCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEE
Q psy17146 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETL 539 (1011)
Q Consensus 460 ~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l 539 (1011)
.+......+.|.|
T Consensus 214 ~G~~~~~~~~l~V------------------------------------------------------------------- 226 (423)
T 3qs7_E 214 LGRECTRLFTIDL------------------------------------------------------------------- 226 (423)
T ss_dssp SCEEEEECEEEES-------------------------------------------------------------------
T ss_pred CCCcceeeEEEEE-------------------------------------------------------------------
Confidence 4433333333333
Q ss_pred EEEecceeecCCceEEEcCCCcEEEEEEEec-CCCCeEEEEecCCceeec---------------CCCcEEEeecCCCCC
Q psy17146 540 DVTYGPRFRARPYSVQVDRGAGVNLLCDVDG-NPAPEITWIHEDSDKVVG---------------NSPNLTLLMTSDDLA 603 (1011)
Q Consensus 540 ~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g-~p~p~v~W~k~~~~~~~~---------------~~~~L~I~~v~~~d~ 603 (1011)
..+|.+ .+.+..+.+|+.+.|.|.+.| .|.|.++|+|++..+... ..++|.|.++..+|+
T Consensus 227 --~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 302 (423)
T 3qs7_E 227 --NQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT 302 (423)
T ss_dssp --SSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTC
T ss_pred --ecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHC
Confidence 233332 344677899999999999999 677999999998754221 124799999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcCCCeeec-C--CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC---CC
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKGRPTIIS-H--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS---DD 677 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~-~--~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~---~~ 677 (1011)
|.|+|.|.|. .+..+.|.|..+|.+.. + ....+.+|+++.|.|.+.|.|.| .|+|+|||..+..... .+
T Consensus 303 G~Y~C~A~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~ 377 (423)
T 3qs7_E 303 GYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI-RCTWTFSRKSFPCEQKGLDNG 377 (423)
T ss_dssp EEEEEEETTE----EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCC-EEEEEETTEEEECBCCBCSSS
T ss_pred EEEEEEEecC----CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCC-eEEEEECCEECCCccccccCC
Confidence 9999999984 78889999999998763 2 35668899999999999999999 9999999999974321 11
Q ss_pred eEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 678 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+ .+.+.....+|+|.|+|.|+|..|+.+.++.|.|.
T Consensus 378 ~-------------~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~ 413 (423)
T 3qs7_E 378 Y-------------SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR 413 (423)
T ss_dssp S-------------EEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--
T ss_pred c-------------EEEEEecccccCEEEEEEEEcCCceEEEEEEEEEe
Confidence 1 22235566789999999999999999999999885
No 22
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=2.5e-38 Score=359.37 Aligned_cols=334 Identities=23% Similarity=0.349 Sum_probs=269.7
Q ss_pred ccCCcEEEEEEeecCCCccEEEEEECCeecCCCc------CccEEEEeeccc-ccCCcEEEEEEEcCCccc-eeeEEEEE
Q psy17146 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------SATELYLTNITR-HQHDSIVKCEVHNDVGKS-EDSETLDV 387 (1011)
Q Consensus 316 ~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~------~~~~L~I~~~~~-~~d~G~Y~C~a~n~~g~~-~~s~~l~V 387 (1011)
.+|+.++|.|.+.+.|.+ .+.|+|+|..+.... ....|.|.++.. + |+|.|+|.|.|..|.. +..+.|.|
T Consensus 20 ~~g~~v~l~C~~~g~p~~-~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~-D~G~Y~C~a~n~~g~~~s~~~~l~v 97 (382)
T 1cs6_A 20 SAEEKVTLTCRARANPPA-TYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAK-DAGSYQCVATNARGTVVSREASLRF 97 (382)
T ss_dssp CSCCEEEECCEEEEESCC-EEEEEETTEECCCSTTSSEEEETTEEEEESCCHHH-HCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCCCcEEEEEEecCCCCC-EEEEEECCEECCcCCCccEEeeCCeEEEecccccc-cCEEEEEEEEcCCcEEEecceEEEe
Confidence 689999999999999876 999999999987531 246799999886 6 9999999999998875 45788888
Q ss_pred EecceEeeC-CCceEecCCCcEEEEeec-CCCCCCceEEEeCCCcee---------eccCCcEEEEeeccCCCeEEEEEE
Q psy17146 388 TYGPRFRAR-PYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGRYYCKA 456 (1011)
Q Consensus 388 ~~~P~~~~~-p~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~Y~C~a 456 (1011)
...|.+... +....+.+|+.+.|.|.+ .+.|.+.+.|++++.... ....+.|.|.+++.+|+|.|+|.|
T Consensus 98 ~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 177 (382)
T 1cs6_A 98 GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFA 177 (382)
T ss_dssp EEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEE
T ss_pred eccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEE
Confidence 887766543 567789999999999996 567889999999975431 233478999999999999999999
Q ss_pred EEcCCcce----eeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCC
Q psy17146 457 SVMGFPEV----GAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGK 532 (1011)
Q Consensus 457 ~n~~~~~~----s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~ 532 (1011)
.|..+... +..+.+.+...
T Consensus 178 ~n~~g~~~~~~~s~~~~l~v~~~--------------------------------------------------------- 200 (382)
T 1cs6_A 178 TSHIDFITKSVFSKFSQLSLAAE--------------------------------------------------------- 200 (382)
T ss_dssp EEEETTEEEEEECCCEEEEEESC---------------------------------------------------------
T ss_pred EEccccccceeEccceeeccchh---------------------------------------------------------
Confidence 98532111 11122221100
Q ss_pred CcccEEEEEEecceeec-CCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee---ecCCCcEEEeecCCCCCEEEEE
Q psy17146 533 SEDSETLDVTYGPRFRA-RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV---VGNSPNLTLLMTSDDLAGRYYC 608 (1011)
Q Consensus 533 ~~~~~~l~V~~~P~~~~-~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~---~~~~~~L~I~~v~~~d~G~Y~C 608 (1011)
+.+..+|.+.. .+....+.+|+.++|.|.+.+.|.+.+.|+|++..+. ......|.|.++..+|+|.|+|
T Consensus 201 ------~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 274 (382)
T 1cs6_A 201 ------DARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYEC 274 (382)
T ss_dssp ------CCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEE
T ss_pred ------hcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccEEecCCcEEEEccCChhhCEEEEE
Confidence 00112454443 4567889999999999999999999999999986643 3456889999999999999999
Q ss_pred EEEecCCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCc
Q psy17146 609 KASVMGFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687 (1011)
Q Consensus 609 ~a~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~ 687 (1011)
.|.| ..+..+..+.|.|..+|.+. .+....+..|+.++|.|.+.|.|.| .+.|+++|..+.. ..++.+..
T Consensus 275 ~a~n-~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~g~~~~~--~~~~~~~~----- 345 (382)
T 1cs6_A 275 EAEN-IKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRP-AVRWLRDGQPLAS--QNRIEVSG----- 345 (382)
T ss_dssp EEEE-TTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCC-EEEEEETTEECCC--CSSEEEET-----
T ss_pred EEEc-CCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCC-EEEEEECCEECCC--CceEEEEC-----
Confidence 9999 56778889999999999887 4466779999999999999999999 8999999999873 45555533
Q ss_pred cceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 688 ~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+.|.|.++..+|+|.|+|.|.|.+|..++++.|.|.
T Consensus 346 ---~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 346 ---GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp ---TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ---CEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 589999999999999999999999999999999874
No 23
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=1.3e-38 Score=364.53 Aligned_cols=344 Identities=22% Similarity=0.371 Sum_probs=270.6
Q ss_pred CCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC--------cCccEEEEe----ecccccCCcEEEEEEEcCCcc
Q psy17146 311 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA--------ASATELYLT----NITRHQHDSIVKCEVHNDVGK 378 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~--------~~~~~L~I~----~~~~~~d~G~Y~C~a~n~~g~ 378 (1011)
.+..+.+|+.++|.|.+.+.|.+ .+.|+|+|..+... .....|.|. ++..+ |+|.|+|.|.|..|.
T Consensus 25 ~~~~v~~G~~v~l~C~~~g~p~~-~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~-D~G~Y~C~a~n~~g~ 102 (404)
T 3p3y_A 25 KDHIVDPRDNILIECEAKGNPAP-SFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEE-YEGEYQCFARNKFGT 102 (404)
T ss_dssp TTCEECSSSCCCCCEEECCSSCC-EEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTS-SCEEEEEEEECSSCE
T ss_pred ccEEEcCCCCEEEEEEecCCCCC-eEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCcc-CCEEEEEEEEcCCCe
Confidence 45678999999999999998876 99999999987532 234556554 67776 999999999999888
Q ss_pred c-eeeEEEEEEecceEee-CCCceEecCCCcEEEEeec-CCCCCCceEEEeCCCce-------eeccCCcEEEEeeccCC
Q psy17146 379 S-EDSETLDVTYGPRFRA-RPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDK-------VVGNSPNLTLLMTSDDL 448 (1011)
Q Consensus 379 ~-~~s~~l~V~~~P~~~~-~p~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~~~-------~~~~~~~L~I~~v~~~d 448 (1011)
. +..+.|.|..+|.+.. .+....+.+|+.+.|.|.+ .+.|.+.+.|++++... .....+.|.|.++..+|
T Consensus 103 ~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d 182 (404)
T 3p3y_A 103 ALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQD 182 (404)
T ss_dssp EEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSCEEESSCCSGG
T ss_pred EeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCcEEEEeeeecc
Confidence 6 4778899988877543 3456789999999999999 88999999999987432 23456789999999999
Q ss_pred -CeEEEEEEEEcCCccee--eEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceE
Q psy17146 449 -AGRYYCKASVMGFPEVG--AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYS 525 (1011)
Q Consensus 449 -~G~Y~C~a~n~~~~~~s--~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~ 525 (1011)
+|.|+|.|.|..+.... ..+.+.+...+..
T Consensus 183 ~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~----------------------------------------------- 215 (404)
T 3p3y_A 183 MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV----------------------------------------------- 215 (404)
T ss_dssp GSSCBEEEEECTTTCCEEECCCBCEEEECCSCC-----------------------------------------------
T ss_pred CCcceEEEEEeccccceeccCceeEEEeccCCc-----------------------------------------------
Confidence 59999999985443221 1222322211110
Q ss_pred EEcCCCCCcccEEEEEEecceeecCC---ceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee------ecCCCcEEEe
Q psy17146 526 VHNDVGKSEDSETLDVTYGPRFRARP---YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLL 596 (1011)
Q Consensus 526 ~~n~~G~~~~~~~l~V~~~P~~~~~p---~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~ 596 (1011)
+..+|.+...+ ....+.+|+.++|.|.+.|.|.+.+.|+|++..+. ...++.|.|.
T Consensus 216 ---------------~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~ 280 (404)
T 3p3y_A 216 ---------------AERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRIT 280 (404)
T ss_dssp ---------------CCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEES
T ss_pred ---------------cccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEc
Confidence 01133333322 35678899999999999999999999999986543 2336789999
Q ss_pred ecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC
Q psy17146 597 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 675 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~ 675 (1011)
++..+|+|.|+|.|.| ..+..+..+.|.|..+|.+. .+....+.+|+.++|.|.+.|.|.| .+.|+++|..+.....
T Consensus 281 ~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~~~ 358 (404)
T 3p3y_A 281 NVSEEDSGEYFCLASN-KMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKP-TVQWMVNGEPLQSAPP 358 (404)
T ss_dssp SCCGGGCEEEEEEEEC-SSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCC-EEEEEETTEEGGGSCC
T ss_pred cCCHhHCEEEEEEEEe-CCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCC-ceEEEECCEecCCCCC
Confidence 9999999999999999 57788899999999999887 4566789999999999999999999 9999999999975432
Q ss_pred CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 676 DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
....... .+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 359 ~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 359 NPNREVA-------GDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403 (404)
T ss_dssp CTTEEEE-------TTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred CceEEec-------CCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 2222111 25899999999999999999999999999999998853
No 24
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=2.1e-38 Score=362.73 Aligned_cols=365 Identities=21% Similarity=0.348 Sum_probs=276.1
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC--CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeec-----
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPV----- 97 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v----- 97 (1011)
.....|..+|.++.+.+|++|+|.|.+.+ +.+.+.|+|++..+... ...|+.+..+ .+|.|.++
T Consensus 19 ~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~----~~~~~~~~~~-----~~l~i~~~~~~~~ 89 (403)
T 3laf_A 19 RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALG----MDDRKQQLPN-----GSLLIQNILHSRH 89 (403)
T ss_dssp CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTT----SCTTEEECTT-----SCEEECSCCCBTT
T ss_pred ceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccC----CcccEEEecC-----CcEEEeeeeccCC
Confidence 34577899999999999999999999987 45689999999877432 1235554332 25778777
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS 177 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~ 177 (1011)
+.+|+|.|+|.+.+...+ ...+..+.|.|..++ ..+.....+.+.+|+.+.|.|. +.+.|.+.+.|+|++..+..
T Consensus 90 ~~~D~G~Y~C~~~~~~~~--~~~s~~~~l~v~~p~--~~~~~~~~~~~~~G~~v~l~C~-~~~~p~~~v~W~~~~~~~~~ 164 (403)
T 3laf_A 90 HKPDEGLYQCEASLGDSG--SIISRTAKVMVAGPL--RFLSQTESITAFMGDTVLLKCE-VIGDPMPTIHWQKNQQDLNP 164 (403)
T ss_dssp BCSSCEEEEEEEECGGGC--EEECCCEEEEECCCC--EECSCCCCEEEETTSCEEECCC-EECSSCCEEEEEESSSBCCC
T ss_pred CCCcceEEEEEEEeCCCc--cEEEEEEEEEecCCC--ccccCCCcEEEEcCCeEEEEEE-EcccCCCeEEEEECCEeccc
Confidence 778999999999864332 223455667766533 2334455778899999999999 67889999999999887743
Q ss_pred cee-EEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEE
Q psy17146 178 NVR-VTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRL 256 (1011)
Q Consensus 178 ~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L 256 (1011)
... .......+ +.|.|.+++.+|+|.|+|.|.|..+.. .+..+.+.|...|.......
T Consensus 165 ~~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~~l~v~~~p~~~~~~~------------- 223 (403)
T 3laf_A 165 IPGDSRVVVLPS-------GALQISRLQPGDSGVYRCSARNPASTR-TGNEAEVRILSDPGLHRQLY------------- 223 (403)
T ss_dssp CTTCCSEEECTT-------SCEEECSCCGGGCEEEEEEEECSSCCC-BCCCEEEEEECCCCCCEEEE-------------
T ss_pred cCCceEEEEcCC-------ceEEEcccccccCEEEEEEEEcCCCce-eccceeEEEecCCCcccCce-------------
Confidence 111 00011112 379999999999999999999987754 23345566655554321100
Q ss_pred EEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEE
Q psy17146 257 YCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKY 336 (1011)
Q Consensus 257 ~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i 336 (1011)
+. .......+.+|+.++|.|.+.+.|.+ .+
T Consensus 224 --------------~~-----------------------------------~~~~~~~~~~g~~~~l~C~~~~~p~~-~~ 253 (403)
T 3laf_A 224 --------------FL-----------------------------------QRPSNVIAIEGKDAVLECCVSGYPPP-SF 253 (403)
T ss_dssp --------------EE-----------------------------------ECCCCEEEETTSCEEECCEEEEESCC-EE
T ss_pred --------------Ee-----------------------------------cCCCceEecCCCcEEEEEEcCCCCCC-eE
Confidence 00 00123456788899999999988876 89
Q ss_pred EEEECCeecCCCc------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEE
Q psy17146 337 RWYINDQPVPAAA------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNL 410 (1011)
Q Consensus 337 ~W~k~g~~l~~~~------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l 410 (1011)
.|++++..+.... ....|.|.++..+ |+|.|+|.|.|..|..+.++.|.|..+|.+...+.+..+.+|+.+.|
T Consensus 254 ~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l 332 (403)
T 3laf_A 254 TWLRGEEVIQLRSKKYSLLGGSNLLISNVTDD-DSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEF 332 (403)
T ss_dssp EEEETTEECCCSSSSEEEETTTEEEECSCCGG-GCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEE
T ss_pred EEEECCeeccCCCceEEECCccEEEEeCCCHH-HCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEE
Confidence 9999998876532 2467999999998 99999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCceEEEeCCCcee------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCC
Q psy17146 411 LCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 476 (1011)
Q Consensus 411 ~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p 476 (1011)
.|.+.|.|.+.+.|+|++.... ......|.|.++..+|+|.|+|.|.|.. +..+..+.|.|..||
T Consensus 333 ~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-G~~~~~~~l~V~~P~ 403 (403)
T 3laf_A 333 ECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEA-GNAQSSAQLIVPKPA 403 (403)
T ss_dssp CCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETT-EEEEEEEEEECCCC-
T ss_pred EEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCC-ceEEEEEEEEEeCCC
Confidence 9999999999999999985432 3446779999999999999999999964 345667777776654
No 25
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=2.4e-38 Score=361.21 Aligned_cols=339 Identities=17% Similarity=0.269 Sum_probs=263.4
Q ss_pred CCcccccCCcEEEEEEeec-CCCccEEEEEECCeecCCCc-------CccEEEEeecccccCCcEEEEEEEcCCccce-e
Q psy17146 311 GSNRLVEGTDVRLYCKAEA-NPSHMKYRWYINDQPVPAAA-------SATELYLTNITRHQHDSIVKCEVHNDVGKSE-D 381 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~~-~p~~~~i~W~k~g~~l~~~~-------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~-~ 381 (1011)
.+..+.+|+.++|.|.+.+ .|. ..+.|+|+|..+.... ....|.|.++... |+|.|+|.|.|..|... .
T Consensus 14 ~~~~v~~G~~v~l~C~~~~~~p~-~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~-D~G~Y~C~a~n~~g~~~s~ 91 (395)
T 1bih_A 14 AEVLFRENNPTVLECIIEGNDQG-VKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQAS-DEGHYQCFAETPAGVASSR 91 (395)
T ss_dssp SEEEEETTSCEEECCCEESCCSS-CEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGG-GCEEEEEEEEETTEEEECC
T ss_pred CceEEeCCCEEEEEEEEecCCCC-ceEEEEECCcCcccccceEEEecCCceEEEecCCCC-CCcEEEEEEEeCCCeEEeE
Confidence 3467899999999999999 555 4999999999886542 3568999999998 99999999999888764 4
Q ss_pred eEEEEEEecceEeeCCCceEecCCCcEEEEeec-CCCCCCceEEEeCCC-------------ceeeccCCcEEEEeeccC
Q psy17146 382 SETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDS-------------DKVVGNSPNLTLLMTSDD 447 (1011)
Q Consensus 382 s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~-------------~~~~~~~~~L~I~~v~~~ 447 (1011)
.+.|.|...+.+...+.+..+.+|+.+.|.|.+ .+.|.+.+.|++++. .......+.|.|.+++.+
T Consensus 92 ~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 171 (395)
T 1bih_A 92 VISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKE 171 (395)
T ss_dssp CEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGG
T ss_pred EEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeec
Confidence 566766654333334556778899999999996 789999999999851 123445678999999999
Q ss_pred CCe---EEEEEEEEcCCcceeeEEEEEEc--CCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCC
Q psy17146 448 LAG---RYYCKASVMGFPEVGAEATVYLK--GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD 522 (1011)
Q Consensus 448 d~G---~Y~C~a~n~~~~~~s~~~~v~v~--~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~ 522 (1011)
|+| .|+|.|.|..+..........+. ..+..
T Consensus 172 d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 207 (395)
T 1bih_A 172 DVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNS-------------------------------------------- 207 (395)
T ss_dssp GCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSS--------------------------------------------
T ss_pred cCCCceEEEEEEEecccceEEEeeeEEecccccccc--------------------------------------------
Confidence 999 99999998654422111111110 00000
Q ss_pred ceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee-----------cCCC
Q psy17146 523 DYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV-----------GNSP 591 (1011)
Q Consensus 523 ~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~-----------~~~~ 591 (1011)
......+|.+ .+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+.. ..+.
T Consensus 208 ---------------~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~ 270 (395)
T 1bih_A 208 ---------------GYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 270 (395)
T ss_dssp ---------------CCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTS
T ss_pred ---------------cccCCcCcee--cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCc
Confidence 0000113333 35677899999999999999999999999999855432 1223
Q ss_pred cEEEeecCCCCCEEEEEEEEecCCCc-eeeEEEEEEcCCCeeecC-Cc-eeeecCCcEEEEEEEEecCCCCeEEEEECCe
Q psy17146 592 NLTLLMTSDDLAGRYYCKASVMGFPE-VGAEATVYLKGRPTIISH-RT-QFGIPGDTARVECSAFSIPPPEKVTWSYRGE 668 (1011)
Q Consensus 592 ~L~I~~v~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~P~i~~~-~~-~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~ 668 (1011)
.|.|.++..+|+|.|+|.|.|. .+. .+..+.|.|..+|.+... .. ..+.+|+.++|.|.+.|.|.| .+.|+++|.
T Consensus 271 ~L~i~~~~~~d~G~Y~C~a~n~-~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~g~ 348 (395)
T 1bih_A 271 RLLFKTTLPEDEGVYTCEVDNG-VGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAK 348 (395)
T ss_dssp EEEESSCCGGGCEEEEEEECCS-SSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCC-CCEEEETTE
T ss_pred eEEEccCChhhCEEEEEEEEeC-CCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCC-eeEEEECCE
Confidence 7999999999999999999994 455 445899999999998844 44 678999999999999999999 899999999
Q ss_pred EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.+.. .++.+.. +.|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 349 ~~~~---~~~~~~~--------~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 349 PLSG---GRATVTD--------SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394 (395)
T ss_dssp ECCS---SSEEEET--------TEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred ECCC---CceEEEC--------CEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence 9863 3565543 38999999999999999999999999999999876
No 26
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=5.3e-38 Score=357.47 Aligned_cols=330 Identities=20% Similarity=0.293 Sum_probs=264.3
Q ss_pred cccccCCcEEEEEEeecCCCccEEEEEE-CCeecCCC------cCccEEEEeeccccc-----CCcEEEEEEEcCCccc-
Q psy17146 313 NRLVEGTDVRLYCKAEANPSHMKYRWYI-NDQPVPAA------ASATELYLTNITRHQ-----HDSIVKCEVHNDVGKS- 379 (1011)
Q Consensus 313 ~~v~~g~~v~l~C~~~~~p~~~~i~W~k-~g~~l~~~------~~~~~L~I~~~~~~~-----d~G~Y~C~a~n~~g~~- 379 (1011)
..+.+|+.++|.|.+.+.|.+ .+.|+| ||..+... .....|.|.++..++ |+|.|+|.|.|..|..
T Consensus 14 ~~~~~G~~v~l~C~~~g~p~p-~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~ 92 (388)
T 2v5m_A 14 IDFSNSTGAEIECKASGNPMP-EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII 92 (388)
T ss_dssp EEEETTTCEEEECEEEEESCC-EEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEE
T ss_pred EEEEcCccEEEEEECCCCCCC-EEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEE
Confidence 347789999999999999886 999999 78877642 245689999999872 3999999999999874
Q ss_pred eeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCC---CceEEEeCCCcee-----------eccCCcEEEEeec
Q psy17146 380 EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPA---PEITWIHEDSDKV-----------VGNSPNLTLLMTS 445 (1011)
Q Consensus 380 ~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~---p~v~W~k~~~~~~-----------~~~~~~L~I~~v~ 445 (1011)
+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.+. +.+.|++++.... ....+.|.|.+++
T Consensus 93 s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 172 (388)
T 2v5m_A 93 SRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 172 (388)
T ss_dssp CCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCC
T ss_pred ecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCC
Confidence 5778888888888888888889999999999999987754 7899999986542 2345789999999
Q ss_pred cCCC-eEEEEEEEEcCCcceee---EEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCC
Q psy17146 446 DDLA-GRYYCKASVMGFPEVGA---EATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 521 (1011)
Q Consensus 446 ~~d~-G~Y~C~a~n~~~~~~s~---~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~ 521 (1011)
.+|+ |.|+|.|.|..++.... ...+.|..+...
T Consensus 173 ~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~------------------------------------------- 209 (388)
T 2v5m_A 173 PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS------------------------------------------- 209 (388)
T ss_dssp GGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSC-------------------------------------------
T ss_pred ccccCeeEEEEeccCCCCceeeccccceEEEecCCcC-------------------------------------------
Confidence 9999 99999999853322111 011222111000
Q ss_pred CceEEEcCCCCCcccEEEEEEecceee-cCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCce-----------eecC
Q psy17146 522 DDYSVHNDVGKSEDSETLDVTYGPRFR-ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK-----------VVGN 589 (1011)
Q Consensus 522 ~~y~~~n~~G~~~~~~~l~V~~~P~~~-~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~-----------~~~~ 589 (1011)
.+|.+. .......+.+|+.++|.|.+.|.|.|.+.|+|++... ....
T Consensus 210 ---------------------~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~ 268 (388)
T 2v5m_A 210 ---------------------SAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV 268 (388)
T ss_dssp ---------------------EEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEE
T ss_pred ---------------------CCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecc
Confidence 012221 1223456789999999999999999999999985332 1223
Q ss_pred CCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCe
Q psy17146 590 SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE 668 (1011)
Q Consensus 590 ~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~ 668 (1011)
++.|.|.++..+|+|.|+|.|.| ..+..+..+.|.|..+|.+. .+....+.+|+.++|.|.+.|.|.| .|+|+|+|.
T Consensus 269 ~~~L~i~~v~~~d~G~Y~C~a~n-~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~ 346 (388)
T 2v5m_A 269 SGTLIIKDAVVEDSGKYLCVVNN-SVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK-TVSWMKDGK 346 (388)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEC-SSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCC-EEEEEETTE
T ss_pred cCEEEECcCCHHHCeEEEEEEec-CCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCC-eEEEEECCE
Confidence 57899999999999999999999 56778889999999998876 4567789999999999999999999 999999999
Q ss_pred EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.+... .+.|.|.++..+|+|.|+|.|.|.+|+.++++.|.|
T Consensus 347 ~i~~~----------------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 347 AIGHS----------------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp ECSCC----------------SSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred ECccC----------------CCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 98631 258999999999999999999999999999999876
No 27
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=1.6e-38 Score=360.65 Aligned_cols=333 Identities=22% Similarity=0.383 Sum_probs=242.6
Q ss_pred cCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeec-cCcCCcEEEEEEEeCCCCcee
Q psy17146 146 TEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPK-KEHHNTTFTCQAQNTADRTYK 224 (1011)
Q Consensus 146 ~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~d~G~Y~C~a~n~~g~~~~ 224 (1011)
.+|+.+.|.|. +.|+|.|+|+|+|++..+..+....... .+ +.|.|.+. +.+|+|.|+|.|.|..|...
T Consensus 21 ~eg~~v~L~C~-~~g~P~p~i~W~k~g~~l~~~~~~~~~~-~~-------g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~- 90 (384)
T 3kld_A 21 SEEKKVKLSCE-VKGNPKPHIRWKLNGTDVDIGMDFRYSV-VD-------GSLLINNPNKTQDAGTYQCIATNSFGTIV- 90 (384)
T ss_dssp CSCSEEEECCE-EEEESCCEEEEEETTEECCC----CEEE-ET-------TEEEEESCCHHHHCEEEEEEEEETTEEEE-
T ss_pred CCCCeEEEEeE-ecCCCCCEEEEEECCEECcCCCCccEEE-EC-------CEEEEcCCCCcccCEEEEEEEEcCcccEE-
Confidence 57999999999 6799999999999998875432221111 12 25666665 88999999999999988642
Q ss_pred EEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEE
Q psy17146 225 VARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCE 304 (1011)
Q Consensus 225 s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~ 304 (1011)
+....+.+...+.+.........+.+|+.+.|.|.+....+.+
T Consensus 91 s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~------------------------------------- 133 (384)
T 3kld_A 91 SREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGEL------------------------------------- 133 (384)
T ss_dssp CCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCE-------------------------------------
T ss_pred ecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCe-------------------------------------
Confidence 2233444444443322222233455566666666443333333
Q ss_pred EEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC------cCccEEEEeecccccCCcEEEEEEEcCCcc
Q psy17146 305 VQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA------ASATELYLTNITRHQHDSIVKCEVHNDVGK 378 (1011)
Q Consensus 305 ~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~ 378 (1011)
.+.|++++.++... .....|.|.++..+ |+|.|+|.|.|..|.
T Consensus 134 ------------------------------~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~n~~~~ 182 (384)
T 3kld_A 134 ------------------------------SYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKS-DVGNYTCVVTNTVTN 182 (384)
T ss_dssp ------------------------------EEEEEETTEECCCSSSEEECTTTCCEEESSCCGG-GCEEEEEEEEETTTT
T ss_pred ------------------------------EEEEEECCCCCEeeccEEEEcCCCcEEEeecCHH-HCceEEEEEeccccc
Confidence 45555555443321 23457999999998 999999999998875
Q ss_pred ce---eeEEEEEE-------ecceEe-eCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce------eeccCCcEEE
Q psy17146 379 SE---DSETLDVT-------YGPRFR-ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK------VVGNSPNLTL 441 (1011)
Q Consensus 379 ~~---~s~~l~V~-------~~P~~~-~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~------~~~~~~~L~I 441 (1011)
.. ....+.+. ..|.+. ..+....+.+|+++.|.|.+.|.|.|.+.|+|++... .....+.|.|
T Consensus 183 ~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I 262 (384)
T 3kld_A 183 HKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEI 262 (384)
T ss_dssp EEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEE
T ss_pred ceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEE
Confidence 43 22333332 234443 4567788999999999999999999999999965422 2334567999
Q ss_pred EeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCC
Q psy17146 442 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 521 (1011)
Q Consensus 442 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~ 521 (1011)
.+++.+|+|.|+|.|.|.
T Consensus 263 ~~v~~~D~G~Y~C~a~N~-------------------------------------------------------------- 280 (384)
T 3kld_A 263 PNFQQEDAGSYECVAENS-------------------------------------------------------------- 280 (384)
T ss_dssp CSCCGGGCEEEEEEEEET--------------------------------------------------------------
T ss_pred CCCChhhCEEEEEEEEcC--------------------------------------------------------------
Confidence 999999999999999964
Q ss_pred CceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----ecCCCcEEEe
Q psy17146 522 DDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----VGNSPNLTLL 596 (1011)
Q Consensus 522 ~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~ 596 (1011)
.|.....+.|.|..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|+|..+. ...+++|.|.
T Consensus 281 --------~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~ 352 (384)
T 3kld_A 281 --------RGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNIT 352 (384)
T ss_dssp --------TEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEES
T ss_pred --------CCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEe
Confidence 344444556777788888888889999999999999999999999999999986542 2235789999
Q ss_pred ecCCCCCEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 597 MTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
++..+|+|.|+|.|.| ..|.....+.|.|.
T Consensus 353 ~v~~~D~G~Y~C~A~N-~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 353 IVNLSDAGMYQCVAEN-KHGVIFSSAELSVI 382 (384)
T ss_dssp SCCGGGCEEEEEEEEE-TTEEEEEEEEEEEC
T ss_pred ecChhhCEEEEEEEEe-CCceEEeceEEEEe
Confidence 9999999999999999 68889999999885
No 28
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=3.1e-37 Score=350.30 Aligned_cols=355 Identities=19% Similarity=0.269 Sum_probs=267.6
Q ss_pred eccceeecCCceeE---EecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeeccc-C
Q psy17146 26 REQKFAMEPQDQTA---VVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVML-D 100 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v---~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~-~ 100 (1011)
.+|.|..+|.+..+ .+|++++|.|.+.+ +.+.+.|+|++..+... ...|+.+.. .+|.|.++.. +
T Consensus 3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~----~~~~~~~~~------~~L~i~~~~~~~ 72 (382)
T 1cs6_A 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMG----PDSRYRLVA------GDLVISNPVKAK 72 (382)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCS----TTSSEEEET------TEEEEESCCHHH
T ss_pred CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcC----CCccEEeeC------CeEEEecccccc
Confidence 47999999999887 79999999999986 67899999999877432 124555531 2799999997 9
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee--c
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS--N 178 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~--~ 178 (1011)
|+|.|+|.+.|..+ ...+..+.|.|...+.... .....+.+.+|+.+.|.|.+..+.|.+.+.|+|++..+.. +
T Consensus 73 D~G~Y~C~a~n~~g---~~~s~~~~l~v~~~~~~~~-~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~ 148 (382)
T 1cs6_A 73 DAGSYQCVATNARG---TVVSREASLRFGFLQEFSA-EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPAD 148 (382)
T ss_dssp HCEEEEEEEEETTE---EEECCCEEEEEEEECCCCS-SCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCC
T ss_pred cCEEEEEEEEcCCc---EEEecceEEEeeccccccc-cCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccC
Confidence 99999999998532 2234457777776554322 2244677889999999998667789999999999876532 1
Q ss_pred eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE---EEEEEEEEe------CCceEEEecCcceee
Q psy17146 179 VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV---ARLKLLVKY------APKVQVSVIGSNRLV 249 (1011)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s---~~v~v~v~~------~P~~~~~~~~~~~v~ 249 (1011)
.+.. ...+. +.|.|.+++.+|+|.|+|.+.|..|..... ..+.+.+.. .|.+...
T Consensus 149 ~~~~--~~~~~------~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~-------- 212 (382)
T 1cs6_A 149 GRRF--VSQTT------GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK-------- 212 (382)
T ss_dssp SSEE--ECTTT------CCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEEC--------
T ss_pred ceEE--EecCc------eEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceecc--------
Confidence 1111 11111 379999999999999999999987643211 112233221 1111100
Q ss_pred cCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeec
Q psy17146 250 EGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEA 329 (1011)
Q Consensus 250 ~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~ 329 (1011)
......+.+|+.++|.|.+.+
T Consensus 213 -----------------------------------------------------------~~~~~~~~~G~~v~l~C~~~g 233 (382)
T 1cs6_A 213 -----------------------------------------------------------FPADTYALTGQMVTLECFAFG 233 (382)
T ss_dssp -----------------------------------------------------------CCSEEEEETTCCEEEECEEEE
T ss_pred -----------------------------------------------------------CCCceEEeCCCeEEEEEEEcc
Confidence 012345678888888888888
Q ss_pred CCCccEEEEEECCeecCC--CcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCc
Q psy17146 330 NPSHMKYRWYINDQPVPA--AASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAG 407 (1011)
Q Consensus 330 ~p~~~~i~W~k~g~~l~~--~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~ 407 (1011)
.|.+ .+.|+|++..+.. ......|.|.++..+ |+|.|+|.|.|..|..+..+.|.|..+|.+...+....+.+|+.
T Consensus 234 ~p~~-~i~W~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~ 311 (382)
T 1cs6_A 234 NPVP-QIKWRKLDGSQTSKWLSSEPLLHIQNVDFE-DEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSD 311 (382)
T ss_dssp ESCC-EEEEEECCSCCSCCCSBSSSEEEECSCCGG-GCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCC
T ss_pred CCCC-EEEEEECCcccccEEecCCcEEEEccCChh-hCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCe
Confidence 8876 8999998877653 245678999999998 99999999999999989999999999999999888899999999
Q ss_pred EEEEeecCCCCCCceEEEeCCCcee-----eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEE
Q psy17146 408 VNLLCDVDGNPAPEITWIHEDSDKV-----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 472 (1011)
Q Consensus 408 v~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v 472 (1011)
+.|.|.+.|.|.+.+.|+|++..+. ....+.|.|.++..+|+|.|+|.|.|..+ .....+.|.|
T Consensus 312 ~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V 380 (382)
T 1cs6_A 312 LRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHG-TVYASAELTV 380 (382)
T ss_dssp EEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTE-EEEEEEEEEE
T ss_pred EEEEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCC-eEEEEEEEEE
Confidence 9999999999999999999985432 22356899999999999999999999643 3445556655
No 29
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=4.7e-37 Score=351.63 Aligned_cols=355 Identities=21% Similarity=0.335 Sum_probs=258.3
Q ss_pred CCCeee--cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEe----eccCc
Q psy17146 133 DPPRIV--QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLT----PKKEH 206 (1011)
Q Consensus 133 ~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~----~~~~~ 206 (1011)
.+|.+. ..+.+.+.+|+.+.|.|. +.|+|.++++|+|++..+.............. ++|.|. +++.+
T Consensus 15 ~~P~i~~~~~~~~~v~~G~~v~l~C~-~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~------~~l~i~~~~~~~~~~ 87 (404)
T 3p3y_A 15 QPPTITKQSAKDHIVDPRDNILIECE-AKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS------GTLVIDFRSGGRPEE 87 (404)
T ss_dssp CCCCEEEECCTTCEECSSSCCCCCEE-ECCSSCCEEEEEETTEECCGGGCSSCBCCSSS------CCCBCCCTTTCCTTS
T ss_pred CCCcccccCCccEEEcCCCCEEEEEE-ecCCCCCeEEEEECCEEeeeecCCcceEecCC------ceEEEEeccCCCCcc
Confidence 344443 345678899999999999 78899999999999987754322111111111 345554 78899
Q ss_pred CCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccce
Q psy17146 207 HNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATE 286 (1011)
Q Consensus 207 d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~ 286 (1011)
|+|.|+|.|.|..|.. .+..+.|.|...|...........+.+|+.++|.|.+....+.+.+.|++++.......
T Consensus 88 D~G~Y~C~a~n~~g~~-~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~---- 162 (404)
T 3p3y_A 88 YEGEYQCFARNKFGTA-LSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQD---- 162 (404)
T ss_dssp SCEEEEEEEECSSCEE-EEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCC----
T ss_pred CCEEEEEEEEcCCCeE-eeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCC----
Confidence 9999999999998765 35667788877776543333445566677777777764333335566665543211100
Q ss_pred EEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccC-C
Q psy17146 287 LYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQH-D 365 (1011)
Q Consensus 287 l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d-~ 365 (1011)
..+.. .....|.|.++..+ | +
T Consensus 163 -----------------------------------------------~~~~~----------~~~~~l~i~~v~~~-d~~ 184 (404)
T 3p3y_A 163 -----------------------------------------------KRVSQ----------GHNGDLYFSNVMLQ-DMQ 184 (404)
T ss_dssp -----------------------------------------------SSEEE----------CTTSCEEESSCCSG-GGS
T ss_pred -----------------------------------------------CcEEE----------cCCCcEEEEeeeec-cCC
Confidence 00110 23456999999998 6 6
Q ss_pred cEEEEEEEcCCccc---eeeEEEEEEec-------ceEeeCC---CceEecCCCcEEEEeecCCCCCCceEEEeCCCcee
Q psy17146 366 SIVKCEVHNDVGKS---EDSETLDVTYG-------PRFRARP---YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV 432 (1011)
Q Consensus 366 G~Y~C~a~n~~g~~---~~s~~l~V~~~-------P~~~~~p---~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~ 432 (1011)
|.|+|.|.|..|.. .....+.|... |.+...+ ....+.+|+.+.|.|.+.|+|.+.+.|+|++....
T Consensus 185 G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~ 264 (404)
T 3p3y_A 185 TDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLP 264 (404)
T ss_dssp SCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCC
T ss_pred cceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECC
Confidence 99999999988764 23456666542 3333222 34678999999999999999999999999986542
Q ss_pred ------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCe
Q psy17146 433 ------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEK 506 (1011)
Q Consensus 433 ------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 506 (1011)
......|.|.+++.+|+|.|+|.|.|.
T Consensus 265 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~----------------------------------------------- 297 (404)
T 3p3y_A 265 SDKAKFENFNKALRITNVSEEDSGEYFCLASNK----------------------------------------------- 297 (404)
T ss_dssp TTTEEEEGGGTEEEESSCCGGGCEEEEEEEECS-----------------------------------------------
T ss_pred CCcccccccCceEEEccCCHhHCEEEEEEEEeC-----------------------------------------------
Confidence 334678999999999999999999953
Q ss_pred eEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee
Q psy17146 507 VTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV 586 (1011)
Q Consensus 507 v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~ 586 (1011)
.|.....+.|.|..+|.+...+.+..+.+|+.++|.|.+.|.|.|.+.|+|+|..+.
T Consensus 298 -----------------------~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~ 354 (404)
T 3p3y_A 298 -----------------------MGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQ 354 (404)
T ss_dssp -----------------------SCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGG
T ss_pred -----------------------CCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecC
Confidence 344445556677788888888889999999999999999999999999999986543
Q ss_pred e--------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcC
Q psy17146 587 V--------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG 628 (1011)
Q Consensus 587 ~--------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 628 (1011)
. ..+++|.|.++..+|+|.|+|.|.| ..|..+..+.|.|.+
T Consensus 355 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N-~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 355 SAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSN-EHGYLLANAFVSVLD 403 (404)
T ss_dssp GSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEE-TTEEEEEEEEEEEC-
T ss_pred CCCCCceEEecCCEEEEeecCHHHCEEEEEEEEe-CCCcEEEEEEEEEEe
Confidence 2 2356899999999999999999999 688888888888854
No 30
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=1.7e-36 Score=345.79 Aligned_cols=354 Identities=18% Similarity=0.259 Sum_probs=246.1
Q ss_pred CCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEE
Q psy17146 134 PPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFT 212 (1011)
Q Consensus 134 ~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 212 (1011)
+|.|. .+..+.+.+|+.+.|.|.+..+.|.+.++|+|++..+............+ ++|.|.+++.+|+|.|+
T Consensus 6 ~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~-------~~L~i~~~~~~D~G~Y~ 78 (395)
T 1bih_A 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE-------GSLVFLRPQASDEGHYQ 78 (395)
T ss_dssp CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTS-------CCEEESSCCGGGCEEEE
T ss_pred CCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCC-------ceEEEecCCCCCCcEEE
Confidence 34444 34577889999999999954448999999999998876543211111122 37999999999999999
Q ss_pred EEEEeCCCCce-eEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEe
Q psy17146 213 CQAQNTADRTY-KVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTN 291 (1011)
Q Consensus 213 C~a~n~~g~~~-~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~ 291 (1011)
|.|.|..|... ....+.+.+...|.+. .....+.+|+.++|.|.+....+.+.+.|++++......
T Consensus 79 C~a~n~~g~~~s~~~~l~v~~~~~p~~~---~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~---------- 145 (395)
T 1bih_A 79 CFAETPAGVASSRVISFRKTYLIASPAK---THEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPN---------- 145 (395)
T ss_dssp EEEEETTEEEECCCEEEEEEEEECCCCE---EEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGG----------
T ss_pred EEEEeCCCeEEeEEEEEEEEEeecCCcC---CcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcc----------
Confidence 99999877552 2234444443344432 123345566666666665332223556666544110000
Q ss_pred eecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCc---EE
Q psy17146 292 ITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDS---IV 368 (1011)
Q Consensus 292 ~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G---~Y 368 (1011)
... .... ..+. + .....|.|.++..+ |+| .|
T Consensus 146 -----------------------~~~-----------~~~~-~~~~-------~---~~~~~L~i~~v~~~-d~G~~~~Y 179 (395)
T 1bih_A 146 -----------------------ADV-----------TDFD-RRIT-------A---GPDGNLYFTIVTKE-DVSDIYKY 179 (395)
T ss_dssp -----------------------GCC-----------CCCC-TTEE-------E---CTTSCEEEEEECGG-GCCSSEEE
T ss_pred -----------------------ccc-----------cccc-ccEE-------E---cCCCcEEEEEEeec-cCCCceEE
Confidence 000 0000 0000 0 22347999999998 999 99
Q ss_pred EEEEEcCCccceeeEEEEEEe-------------cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceee--
Q psy17146 369 KCEVHNDVGKSEDSETLDVTY-------------GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV-- 433 (1011)
Q Consensus 369 ~C~a~n~~g~~~~s~~l~V~~-------------~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~-- 433 (1011)
+|.|.|..|............ .|.+ .+....+.+|+.+.|.|.+.|+|.+.+.|+|++..+..
T Consensus 180 ~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~ 257 (395)
T 1bih_A 180 VCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNP 257 (395)
T ss_dssp EEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCT
T ss_pred EEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCC
Confidence 999999988765433322211 2333 35677899999999999999999999999999854321
Q ss_pred ---------ccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCC
Q psy17146 434 ---------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPP 504 (1011)
Q Consensus 434 ---------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~ 504 (1011)
.....|.|.+++.+|+|.|+|.|.|.
T Consensus 258 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~--------------------------------------------- 292 (395)
T 1bih_A 258 EDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNG--------------------------------------------- 292 (395)
T ss_dssp TSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCS---------------------------------------------
T ss_pred ceeEEEEecCCCceEEEccCChhhCEEEEEEEEeC---------------------------------------------
Confidence 11236999999999999999999864
Q ss_pred CeeEEeeCCeEeeccCCCceEEEcCCCCCcc-cEEEEEEecceeecCCce-EEEcCCCcEEEEEEEecCCCCeEEEEecC
Q psy17146 505 EKVTWSYRGEEIGVGSSDDYSVHNDVGKSED-SETLDVTYGPRFRARPYS-VQVDRGAGVNLLCDVDGNPAPEITWIHED 582 (1011)
Q Consensus 505 ~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~-~~~l~V~~~P~~~~~p~~-~~v~~G~~~~l~C~~~g~p~p~v~W~k~~ 582 (1011)
.|.... .+.|.|..+|.|...+.. ..+.+|+.++|.|.+.|.|.|.+.|+|++
T Consensus 293 -------------------------~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g 347 (395)
T 1bih_A 293 -------------------------VGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNA 347 (395)
T ss_dssp -------------------------SSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETT
T ss_pred -------------------------CCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECC
Confidence 333322 456667778888877776 88999999999999999999999999998
Q ss_pred Cceee----cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 583 SDKVV----GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 583 ~~~~~----~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
..+.. ..++.|+|.++..+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 348 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N-~~G~~~~~~~l~V 394 (395)
T 1bih_A 348 KPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATN-EHGDKYFETLVQV 394 (395)
T ss_dssp EECCSSSEEEETTEEEESSCCSTTCEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred EECCCCceEEECCEEEEeeCCcccCEEEEEEEEc-cCCCceEEEEEEE
Confidence 55421 2345999999999999999999999 6788888888876
No 31
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=1.7e-36 Score=344.95 Aligned_cols=334 Identities=19% Similarity=0.313 Sum_probs=244.6
Q ss_pred eeeecCCCcEEEEEEccCCCCCcEEEEEe-CCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcC------CcEEEEE
Q psy17146 142 TLYTTEDREIELECISANGKPPAEITWID-GTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHH------NTTFTCQ 214 (1011)
Q Consensus 142 ~~~v~eg~~v~L~C~~~~g~P~~~i~W~k-~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d------~G~Y~C~ 214 (1011)
.+.+.+|+.+.|.|. +.|.|.++++|+| ++..+........ ...+ ++|.|.+++.+| +|.|+|.
T Consensus 13 ~~~~~~G~~v~l~C~-~~g~p~p~v~W~k~~g~~~~~~~~~~~-~~~~-------~~L~i~~~~~~d~~~~~d~G~Y~C~ 83 (388)
T 2v5m_A 13 RIDFSNSTGAEIECK-ASGNPMPEIIWIRSDGTAVGDVPGLRQ-ISSD-------GKLVFPPFRAEDYRQEVHAQVYACL 83 (388)
T ss_dssp EEEEETTTCEEEECE-EEEESCCEEEEEETTSCBCCCBTTTBE-ECST-------TEEEECCCCGGGCCHHHHEEEEEEE
T ss_pred eEEEEcCccEEEEEE-CCCCCCCEEEEEcCCCCccccCCCceE-EcCC-------ceEEecccChhhccccccCceEEEE
Confidence 466789999999999 6789999999999 5655543222111 1122 379999999987 9999999
Q ss_pred EEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCC--ccEEEEEeCCcccCCccccceEEEEee
Q psy17146 215 AQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPS--HMKYRWYINDQPVPAAASATELYLTNI 292 (1011)
Q Consensus 215 a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~--~~~i~W~~~~~~l~~~~~~~~l~i~~~ 292 (1011)
|.|..|.. .+..+.|.+..+|.+... .....+.+|+.++|.|.+.+.++ .+.+.|++
T Consensus 84 a~n~~g~~-~s~~~~v~v~~~p~~~~~-~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~------------------- 142 (388)
T 2v5m_A 84 ARNQFGSI-ISRDVHVRAVVAQYYEAD-VNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHT------------------- 142 (388)
T ss_dssp EEETTEEE-ECCCEEEEEECCCCCCCB-CCCEEEETTSCEEECCBCCTTTTTTEEEEEEEE-------------------
T ss_pred EEccCCeE-EecceEEEEccccccccC-ccceeeecCCcEEEEEECcCCCCCCcceEEEEe-------------------
Confidence 99998854 244566666666654322 23345556666666666655432 14455554
Q ss_pred ecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC----------cCccEEEEeecccc
Q psy17146 293 TRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA----------ASATELYLTNITRH 362 (1011)
Q Consensus 293 ~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~----------~~~~~L~I~~~~~~ 362 (1011)
++..+... .....|.|.+++.+
T Consensus 143 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 174 (388)
T 2v5m_A 143 ------------------------------------------------DEEENYFPGAEYDGKYLVLPSGELHIREVGPE 174 (388)
T ss_dssp ------------------------------------------------TTCCEECSSSCBTTTEEECTTSCEEESSCCGG
T ss_pred ------------------------------------------------CCCcccccccCCCCcEEEccCCcEEEecCCcc
Confidence 44332110 12357999999998
Q ss_pred cCC-cEEEEEEEcCCccc-e---eeEEEEEEec-----ceEe-eCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce
Q psy17146 363 QHD-SIVKCEVHNDVGKS-E---DSETLDVTYG-----PRFR-ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK 431 (1011)
Q Consensus 363 ~d~-G~Y~C~a~n~~g~~-~---~s~~l~V~~~-----P~~~-~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~ 431 (1011)
|+ |.|+|.|.|..+.. . ....|.|..+ |.+. .......+.+|+.+.|.|.+.|+|.+.+.|+|++...
T Consensus 175 -d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~ 253 (388)
T 2v5m_A 175 -DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGT 253 (388)
T ss_dssp -GGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTS
T ss_pred -ccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCC
Confidence 88 99999999986433 2 2235666654 3322 1234457889999999999999999999999985321
Q ss_pred -----------eeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeee
Q psy17146 432 -----------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFS 500 (1011)
Q Consensus 432 -----------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~ 500 (1011)
.......|.|.+++.+|+|.|+|.|.|.
T Consensus 254 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~----------------------------------------- 292 (388)
T 2v5m_A 254 TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNS----------------------------------------- 292 (388)
T ss_dssp SCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECS-----------------------------------------
T ss_pred cccccccccCceecccCEEEECcCCHHHCeEEEEEEecC-----------------------------------------
Confidence 2234568999999999999999999964
Q ss_pred CCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEe
Q psy17146 501 IPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH 580 (1011)
Q Consensus 501 ~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k 580 (1011)
.|.....+.|.|..+|.+...|....+.+|+.++|.|.+.|.|.|.+.|+|
T Consensus 293 -----------------------------~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~ 343 (388)
T 2v5m_A 293 -----------------------------VGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK 343 (388)
T ss_dssp -----------------------------SCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEE
T ss_pred -----------------------------CCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEE
Confidence 333444555667777777777888899999999999999999999999999
Q ss_pred cCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 581 EDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 581 ~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
+|..+. ..++.|.|.++..+|+|.|+|.|.| ..|..+..+.|.|
T Consensus 344 ~g~~i~-~~~~~L~i~~v~~~d~G~Y~C~a~N-~~G~~~~~~~l~V 387 (388)
T 2v5m_A 344 DGKAIG-HSESVLRIESVKKEDKGMYQCFVRN-DRESAEASAELKL 387 (388)
T ss_dssp TTEECS-CCSSEEEESSCCGGGCEEEEEEEEC-SSCEEEEEEEEEE
T ss_pred CCEECc-cCCCEEEEecCChhhCEEEEEEEEc-CCCcEEEEEEEEe
Confidence 986553 3467999999999999999999999 6788888888876
No 32
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=339.89 Aligned_cols=344 Identities=17% Similarity=0.215 Sum_probs=246.7
Q ss_pred eCCcccccCCcEEEEEEeecCCCccEEEEEECC--eecC--------------------CCcCccEEEEeecccccCCcE
Q psy17146 310 IGSNRLVEGTDVRLYCKAEANPSHMKYRWYIND--QPVP--------------------AAASATELYLTNITRHQHDSI 367 (1011)
Q Consensus 310 ~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g--~~l~--------------------~~~~~~~L~I~~~~~~~d~G~ 367 (1011)
.....+.+|++++|.|.+.+.+.+ .+.|+|++ ..+. .......|.|.+++.+ |+|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~-D~G~ 84 (523)
T 2rcj_C 7 PPSASGTPGQRVTISCTGTSSGSI-TVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAE-DESD 84 (523)
T ss_pred CCceEEecCCcEEEEEEEeccCCc-eEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChh-hCEE
Confidence 356789999999999999988765 99999975 2111 0022347999999998 9999
Q ss_pred EEEEEEcCCcc---ceeeEEEEE----EecceEeeCCCceEecCCCcEEEEeecCCCCCC--ceEEEeCCCceeec----
Q psy17146 368 VKCEVHNDVGK---SEDSETLDV----TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDKVVG---- 434 (1011)
Q Consensus 368 Y~C~a~n~~g~---~~~s~~l~V----~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p--~v~W~k~~~~~~~~---- 434 (1011)
|+|.|.|..|. ....+.|.| ..+|.+...+....+.+|+.+.|.|.+.|.|++ .++|+|++..+...
T Consensus 85 Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~ 164 (523)
T 2rcj_C 85 YYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETT 164 (523)
T ss_pred EEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEec
Confidence 99999998763 235678888 356777777777778889999999999998765 99999998654211
Q ss_pred -----cC------CcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCC
Q psy17146 435 -----NS------PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPP 503 (1011)
Q Consensus 435 -----~~------~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~ 503 (1011)
.. ..|.|.++..+|+|.|+|.|.|..+.. ...+.+.+.
T Consensus 165 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~------------------------------ 213 (523)
T 2rcj_C 165 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV-EKTVAPTEC------------------------------ 213 (523)
T ss_pred cccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCccc-ccceeeeec------------------------------
Confidence 11 258999999999999999999864321 111111100
Q ss_pred CCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecC-CCC-eEEEEec
Q psy17146 504 PEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PAP-EITWIHE 581 (1011)
Q Consensus 504 ~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~-p~p-~v~W~k~ 581 (1011)
..+..+|.+...+....+.+|+.+.|.|.+.|. |.| .++|+|+
T Consensus 214 -----------------------------------~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~ 258 (523)
T 2rcj_C 214 -----------------------------------SASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSG 258 (523)
T ss_pred -----------------------------------CCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecC
Confidence 001123444433333456789999999999987 878 8999999
Q ss_pred CCceee-------cCC------CcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee--cCCcee-eecCCc
Q psy17146 582 DSDKVV-------GNS------PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII--SHRTQF-GIPGDT 645 (1011)
Q Consensus 582 ~~~~~~-------~~~------~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~--~~~~~~-v~~G~~ 645 (1011)
+..+.. ..+ +.|.|.++..+| |.|+|.|.| ..+.....+.|.|..+|.+. .+.... +.+|+.
T Consensus 259 g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n-~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~ 336 (523)
T 2rcj_C 259 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNH-KPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRT 336 (523)
T ss_pred CcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEe-CCCCcceEEecCCCcCceEEecCCCchhhcccCCc
Confidence 865321 122 379999999999 999999999 46666677777777777653 333333 788999
Q ss_pred EEEEEEEEecCCC---CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 646 ARVECSAFSIPPP---EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 646 v~L~C~~~g~p~p---~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
++|.|.+.|.|++ ..|+|+|+|..+............+ ......+.|.|.++..+|.|.|+|.|.|..|.......
T Consensus 337 ~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~-g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 415 (523)
T 2rcj_C 337 PEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYN-STYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKT 415 (523)
T ss_pred eEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCC-CcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEE
Confidence 9999999997532 3899999999987432111111110 00112467999999999999999999999887765555
Q ss_pred EE
Q psy17146 723 LK 724 (1011)
Q Consensus 723 l~ 724 (1011)
|.
T Consensus 416 ~~ 417 (523)
T 2rcj_C 416 IS 417 (523)
T ss_pred EE
Confidence 54
No 33
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=100.00 E-value=2.5e-35 Score=331.92 Aligned_cols=338 Identities=16% Similarity=0.161 Sum_probs=240.4
Q ss_pred ceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCc--------ccCCCCcceEEeecC-CCceeEEEEeecccCCCceE
Q psy17146 36 DQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPH--------RNLSGFDRYAMIGSD-EEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 36 ~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~-~~~~~~L~I~~v~~~D~G~Y 105 (1011)
.+.+.+|++|+|.|.+.+ +.+.+.|+|++..+... .......|+.+..+. ..+.++|.|.+++.+|+|.|
T Consensus 3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 82 (363)
T 1wio_A 3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 82 (363)
T ss_dssp EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence 468899999999999986 66799999998532111 011223566554210 22456899999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEee
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEA 185 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~ 185 (1011)
+|.+.+. ...+.|.|... ...+...+.+|+.+.|.|. +.+.|.+.++|+|++..+..
T Consensus 83 ~C~~~n~--------~~~~~l~V~~~------~~~~~~~v~~G~~v~l~C~-~~~~p~~~v~W~~~~~~~~~-------- 139 (363)
T 1wio_A 83 ICEVEDQ--------KEEVQLLVFGL------TANSDTHLLQGQSLTLTLE-SPPGSSPSVQCRSPRGKNIQ-------- 139 (363)
T ss_dssp EEEETTE--------EEEEEEEEEEE------EESSCSSEESBSCEEEEEE-CCTTCCCCEEEECSSSCEEE--------
T ss_pred EEEEEEC--------CCcEEEEEEeC------CCCCceEEecCCCEEEEEE-cCCCCCCeEEEEcCCCcccc--------
Confidence 9999874 23577777642 2222346789999999999 66799999999998765411
Q ss_pred ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccC--
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEAN-- 263 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~-- 263 (1011)
....|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|...|... ....+.+|+.+.|.|.+.+.
T Consensus 140 --------~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~--~~~~~l~v~~~p~~~----~~~~~~~G~~v~l~C~~~~~~~ 205 (363)
T 1wio_A 140 --------GGKTLSVSQLELQDSGTWTCTVLQNQKKV--EFKIDIVVLAFQKAS----SIVYKKEGEQVEFSFPLAFTVE 205 (363)
T ss_dssp --------ESSEEEECSBCGGGCEECEEEEEETTEEE--EECCEECEECCSCSE----EEEEEETBCCEEEECCCCCCCC
T ss_pred --------cceEEEEeeCChhcCCEEEEEEecCCCeE--EEEEEEEEecCCCCC----CceEEecCCEEEEEEEEecccc
Confidence 12489999999999999999999875433 455566666666543 33457789999999988774
Q ss_pred --CCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEE-
Q psy17146 264 --PSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYI- 340 (1011)
Q Consensus 264 --~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k- 340 (1011)
.+.+.+.|+++|..+.... +...... . .+.+..
T Consensus 206 ~~~P~p~i~W~~~g~~~~~~~----------------------------------------~~~~~~~--~--~~~~~~~ 241 (363)
T 1wio_A 206 KLTGSGELWWQAERASSSKSW----------------------------------------ITFDLKN--K--EVSVKRV 241 (363)
T ss_dssp SSCEEEEEEEEESSCCCCCCE----------------------------------------EEEEECS--S--CEEEEEE
T ss_pred cCCCceeEEEecCCCCccceE----------------------------------------EEEEecC--C--eeecccc
Confidence 3457899998887653210 0000000 0 111111
Q ss_pred -CCee-cCCCcCccEEEEeecccccCCcEEEEEEEcC--CccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCC
Q psy17146 341 -NDQP-VPAAASATELYLTNITRHQHDSIVKCEVHND--VGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDG 416 (1011)
Q Consensus 341 -~g~~-l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~--~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g 416 (1011)
.+.. .........|.|.++..+ |+|.|+|.|.|. .|..+..+.|.|... .|+.+.|.|.+.|
T Consensus 242 ~~~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v-------------~g~~~~l~C~~~g 307 (363)
T 1wio_A 242 TQDPKLQMGKKLPLHLTLPQALPQ-YAGSGNLTLALEAKTGKLHQEVNLVVMRA-------------TQLQKNLTCEVWG 307 (363)
T ss_dssp ECSSCCBCCSSSSCEEEESSBCGG-GCEEEEEEECBTTTTCCEEEEEEEEEEEE-------------CCCSSSEEEEEES
T ss_pred ccchhhhcccCCceEEEEccCCcC-cCcEEEEEEEEhhhcCeEEEEEeEEEEEe-------------cCCCeeEEEEEcc
Confidence 0000 011133458999999998 999999999999 998888888888721 1899999999999
Q ss_pred CCCCc--eEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEE
Q psy17146 417 NPAPE--ITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 470 (1011)
Q Consensus 417 ~p~p~--v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v 470 (1011)
.|.|. +.|+|++..... +..|.|.++..+|+|.|+|.|.|.+....+..+.|
T Consensus 308 ~p~p~~~i~W~~~~~~~~~--~~~l~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~V 361 (363)
T 1wio_A 308 PTSPKLMLSLKLENKEAKV--SKREKAVWVLNPEAGMWQCLLSDSGQVLLESNIKV 361 (363)
T ss_dssp SCCTTCCEEEECSSSSCSE--EESSSEEEESSCCSEEEEEEECSSSSCCEEEEEEE
T ss_pred ccCCCccEEEEeCCCceee--eeeeeeeeeccccceeEEEEEecCCeEEEecceEe
Confidence 99998 999999976543 45688999999999999999998665555544443
No 34
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=100.00 E-value=6.8e-35 Score=328.34 Aligned_cols=297 Identities=16% Similarity=0.195 Sum_probs=232.0
Q ss_pred cccccCCcEEEEEEeecCCCccEEEEEECCeecCC-------------------------CcCccEEEEeecccccCCcE
Q psy17146 313 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA-------------------------AASATELYLTNITRHQHDSI 367 (1011)
Q Consensus 313 ~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~-------------------------~~~~~~L~I~~~~~~~d~G~ 367 (1011)
..+.+|+.++|.|.+.+.|.+ .+.|+|++..+.. ......|.|.+++.+ |+|.
T Consensus 4 v~~~~G~~v~L~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~-D~G~ 81 (363)
T 1wio_A 4 VLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIE-DSDT 81 (363)
T ss_dssp EEEETTSCEEECCCCTTCSSC-CEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGG-GCEE
T ss_pred EEEeCCCeEEEEEEecCCCce-EEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHH-HCEE
Confidence 457899999999999987775 9999999854210 012557999999998 9999
Q ss_pred EEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccC
Q psy17146 368 VKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDD 447 (1011)
Q Consensus 368 Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~ 447 (1011)
|+|.|.|.. ..+.|.|.. +...|. ..+.+|++++|.|.+.+.|.+.+.|++++... ......|.|.+++.+
T Consensus 82 Y~C~~~n~~----~~~~l~V~~---~~~~~~-~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~-~~~~~~L~i~~v~~~ 152 (363)
T 1wio_A 82 YICEVEDQK----EEVQLLVFG---LTANSD-THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-IQGGKTLSVSQLELQ 152 (363)
T ss_dssp EEEEETTEE----EEEEEEEEE---EEESSC-SSEESBSCEEEEEECCTTCCCCEEEECSSSCE-EEESSEEEECSBCGG
T ss_pred EEEEEEECC----CcEEEEEEe---CCCCCc-eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc-cccceEEEEeeCChh
Confidence 999998864 366777764 333443 46889999999999999999999999998665 446788999999999
Q ss_pred CCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEE
Q psy17146 448 LAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVH 527 (1011)
Q Consensus 448 d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~ 527 (1011)
|+|.|+|.|.|.+ ......+.
T Consensus 153 d~G~Y~C~a~~~~-~~~~~~~~---------------------------------------------------------- 173 (363)
T 1wio_A 153 DSGTWTCTVLQNQ-KKVEFKID---------------------------------------------------------- 173 (363)
T ss_dssp GCEECEEEEEETT-EEEEECCE----------------------------------------------------------
T ss_pred cCCEEEEEEecCC-CeEEEEEE----------------------------------------------------------
Confidence 9999999999752 12222222
Q ss_pred cCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEec-----CCCCeEEEEecCCceee---------------
Q psy17146 528 NDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDG-----NPAPEITWIHEDSDKVV--------------- 587 (1011)
Q Consensus 528 n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g-----~p~p~v~W~k~~~~~~~--------------- 587 (1011)
|.|..+|.. +....+.+|+.+.|.|.+.+ .|.|.+.|+++|..+..
T Consensus 174 -----------l~v~~~p~~---~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~ 239 (363)
T 1wio_A 174 -----------IVVLAFQKA---SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVK 239 (363)
T ss_dssp -----------ECEECCSCS---EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEE
T ss_pred -----------EEEecCCCC---CCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeecc
Confidence 233323322 24667889999999998887 78899999999854322
Q ss_pred ----------cC--CCcEEEeecCCCCCEEEEEEEEecC--CCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEE
Q psy17146 588 ----------GN--SPNLTLLMTSDDLAGRYYCKASVMG--FPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAF 653 (1011)
Q Consensus 588 ----------~~--~~~L~I~~v~~~d~G~Y~C~a~n~~--~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~ 653 (1011)
.. ...|.|.++..+|+|.|+|.|.| . .|..+..+.|.|.. ..|+.++|.|.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n-~~~~g~~~~~~~l~V~~------------v~g~~~~l~C~~~ 306 (363)
T 1wio_A 240 RVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLAL-EAKTGKLHQEVNLVVMR------------ATQLQKNLTCEVW 306 (363)
T ss_dssp EEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECB-TTTTCCEEEEEEEEEEE------------ECCCSSSEEEEEE
T ss_pred ccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEE-hhhcCeEEEEEeEEEEE------------ecCCCeeEEEEEc
Confidence 02 34899999999999999999999 5 57888888888872 1289999999999
Q ss_pred ecCCCCe--EEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 654 SIPPPEK--VTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 654 g~p~p~~--v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
|.|.| . ++|+|+|..+.. ...|.|.++..+|+|.|+|.|+|. |....+..|.|
T Consensus 307 g~p~p-~~~i~W~~~~~~~~~-----------------~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V 361 (363)
T 1wio_A 307 GPTSP-KLMLSLKLENKEAKV-----------------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361 (363)
T ss_dssp SSCCT-TCCEEEECSSSSCSE-----------------EESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred cccCC-CccEEEEeCCCceee-----------------eeeeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence 99988 6 999999987752 246788999999999999999975 66666666665
No 35
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=100.00 E-value=1.8e-33 Score=325.73 Aligned_cols=374 Identities=17% Similarity=0.246 Sum_probs=246.1
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCCC-----CeeEEeeCC--eecC----C--cccCCCCcceEEeecCCCceeEEEEe
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDKT-----GVLQWTKDD--FALG----P--HRNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~~-----~~v~W~k~~--~~l~----~--~~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.|...|.++.+.+|++|+|.|.+.+.. +.+.|+|++ ..+. . .......+|+.+.. ..+.++|+|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~ 80 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSG--SRTDFTLTID 80 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEE--ETTEEEEEES
T ss_pred ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEc--cCCcEEEEeC
Confidence 366678999999999999999998754 379999974 2210 0 00011235777654 2356789999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCc
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWIDGTG 173 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~ 173 (1011)
+++.+|+|.|+|.+.+.... ..+..+.|.|.....+|.+.. .+.....+|+.+.|.|.+.++.|.+ +++|+|++.
T Consensus 81 ~v~~~D~G~Y~C~a~n~~~~---~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~ 157 (438)
T 1qgc_4 81 PVEADDVATYYCQQSNEVPL---TFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS 157 (438)
T ss_dssp SCCGGGCEEEEEEECSSTTC---CBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred CCcCcCCeeEEEEEecCCCc---cccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCE
Confidence 99999999999999886431 224457788866544555543 2222334688999999955557887 999999998
Q ss_pred eeeeceeEEEee-ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEe-CCceEEEecCcceeecC
Q psy17146 174 TVMSNVRVTEEA-SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKY-APKVQVSVIGSNRLVEG 251 (1011)
Q Consensus 174 ~l~~~~~~~~~~-~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~-~P~~~~~~~~~~~v~~g 251 (1011)
.+..+....... ......+...+.|.|.++..+|+|.|+|.|.|..+... +.+.+.. .+.+.+..+....+.+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~G 233 (438)
T 1qgc_4 158 ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP----IVKSFNRNECEVMLVESGGGLVKPG 233 (438)
T ss_dssp EECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSC----EEEEEETTC-CCEEEEECCEEECTT
T ss_pred EcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCc----eecccccccceeEEecCCceEEecC
Confidence 876552221112 22233455568999999999999999999999888652 2222221 22233334445567788
Q ss_pred ceEEEEEEcccCCC-ccEEEEEeC--CcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEee
Q psy17146 252 TDVRLYCKAEANPS-HMKYRWYIN--DQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAE 328 (1011)
Q Consensus 252 ~~v~L~C~~~~~~~-~~~i~W~~~--~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~ 328 (1011)
+.++|.|.+.+.+. .+.+.|+++ ++. +.+.....
T Consensus 234 ~~v~L~C~~~g~p~~~~~v~W~k~~~g~~-------------------------------------------~~~~~~~~ 270 (438)
T 1qgc_4 234 GSLKLSCTASGFIFNRCAMSWVRQTPEKR-------------------------------------------LEWVATIS 270 (438)
T ss_dssp CCEEEEEEEESSCGGGSCEEEEEEETTTE-------------------------------------------EEEEEEEC
T ss_pred CcEEEEEEEcccccCCcEEEEEECCCCCC-------------------------------------------cEEEEEEe
Confidence 88888888887762 467788774 221 11100000
Q ss_pred cCCC--------ccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCc-----cceeeEEEEEEe----cc
Q psy17146 329 ANPS--------HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVG-----KSEDSETLDVTY----GP 391 (1011)
Q Consensus 329 ~~p~--------~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g-----~~~~s~~l~V~~----~P 391 (1011)
.... .-.+.-..+ .......|.|.+++.+ |+|.|+|.|.|..+ .......|.|.. +|
T Consensus 271 ~~~~~~~~~~~~~~r~~~~~~-----~~~~~~~L~I~~v~~~-D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P 344 (438)
T 1qgc_4 271 SGGTYTYYPDSVKGRFTISRD-----NAKNTLYLQMSSLRSA-DTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPP 344 (438)
T ss_dssp TTSCCEECCGGGTTTEEEEEE-----TTTTEEEEEECSCCGG-GCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCC
T ss_pred ecCCceecCcccCCcEEEEee-----cCCCeEEEEECCCChh-hCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCC
Confidence 0000 001111100 0123458999999998 99999999999554 223556777773 56
Q ss_pred eEeeCCCceEecCCCcEEEEeecCCC-CCC-ceEEEeCCCceee-------cc-----CCcEEEEeeccCCCeEEEEEEE
Q psy17146 392 RFRARPYSVQVDRGAGVNLLCDVDGN-PAP-EITWIHEDSDKVV-------GN-----SPNLTLLMTSDDLAGRYYCKAS 457 (1011)
Q Consensus 392 ~~~~~p~~~~v~~G~~v~l~C~~~g~-p~p-~v~W~k~~~~~~~-------~~-----~~~L~I~~v~~~d~G~Y~C~a~ 457 (1011)
.+...+....+.+|+.++|.|.+.|. |.+ .|.|++++..+.. .. ...|.|.++..+| |.|+|.|.
T Consensus 345 ~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~ 423 (438)
T 1qgc_4 345 SVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVA 423 (438)
T ss_dssp EEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEE
T ss_pred eEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEE
Confidence 55444334457789999999999997 888 9999999865321 11 1248899998889 99999999
Q ss_pred EcCC
Q psy17146 458 VMGF 461 (1011)
Q Consensus 458 n~~~ 461 (1011)
|..+
T Consensus 424 n~~g 427 (438)
T 1qgc_4 424 HPAS 427 (438)
T ss_dssp EGGG
T ss_pred eCCC
Confidence 9644
No 36
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=100.00 E-value=2.8e-34 Score=332.38 Aligned_cols=340 Identities=19% Similarity=0.297 Sum_probs=239.3
Q ss_pred eCCcccccCCcEEEEEEeecCCCc---cEEEEEECC--eec--------------CC------CcCccEEEEeecccccC
Q psy17146 310 IGSNRLVEGTDVRLYCKAEANPSH---MKYRWYIND--QPV--------------PA------AASATELYLTNITRHQH 364 (1011)
Q Consensus 310 ~~~~~v~~g~~v~l~C~~~~~p~~---~~i~W~k~g--~~l--------------~~------~~~~~~L~I~~~~~~~d 364 (1011)
.....+.+|++++|.|.+.+.+.+ ..+.|+|++ ..+ .. ......|.|.+++.+ |
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~-D 86 (438)
T 1qgc_4 8 PASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEAD-D 86 (438)
T ss_dssp CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGG-G
T ss_pred CCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCc-C
Confidence 345678999999999999888763 589999963 221 00 012357999999998 9
Q ss_pred CcEEEEEEEcCCccc-eeeEEEEEEe---cceEeeCCCceEecCCCcEEEEeecCC-CCCC-ceEEEeCCCceeec----
Q psy17146 365 DSIVKCEVHNDVGKS-EDSETLDVTY---GPRFRARPYSVQVDRGAGVNLLCDVDG-NPAP-EITWIHEDSDKVVG---- 434 (1011)
Q Consensus 365 ~G~Y~C~a~n~~g~~-~~s~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~~~g-~p~p-~v~W~k~~~~~~~~---- 434 (1011)
+|.|+|.|.|..+.. ...+.|.|.. +|.+...+....+.+|+.+.|.|.+.| .|.+ .|+|+|++..+...
T Consensus 87 ~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~ 166 (438)
T 1qgc_4 87 VATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS 166 (438)
T ss_dssp CEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEE
T ss_pred CeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceec
Confidence 999999999987754 4567777764 677665443334457889999999977 6777 99999988543211
Q ss_pred ------c------CCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCC
Q psy17146 435 ------N------SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIP 502 (1011)
Q Consensus 435 ------~------~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~ 502 (1011)
. ...|.|.++..+|+|.|+|.|.|..+.. .+.+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~---~~~~~~~~---------------------------- 215 (438)
T 1qgc_4 167 WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS---PIVKSFNR---------------------------- 215 (438)
T ss_dssp EECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS---CEEEEEET----------------------------
T ss_pred cccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC---ceeccccc----------------------------
Confidence 1 2368999999999999999999864332 11111110
Q ss_pred CCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCC--CCeEEEEe
Q psy17146 503 PPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNP--APEITWIH 580 (1011)
Q Consensus 503 ~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k 580 (1011)
..++.+...+....+.+|+.++|.|.+.|.| .+.+.|+|
T Consensus 216 ---------------------------------------~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k 256 (438)
T 1qgc_4 216 ---------------------------------------NECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVR 256 (438)
T ss_dssp ---------------------------------------TC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred ---------------------------------------ccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEE
Confidence 0011112234456789999999999999998 67999999
Q ss_pred c--CCcee-----------------------e-----cCCCcEEEeecCCCCCEEEEEEEEecCC----CceeeEEEEEE
Q psy17146 581 E--DSDKV-----------------------V-----GNSPNLTLLMTSDDLAGRYYCKASVMGF----PEVGAEATVYL 626 (1011)
Q Consensus 581 ~--~~~~~-----------------------~-----~~~~~L~I~~v~~~d~G~Y~C~a~n~~~----~~~s~~~~l~V 626 (1011)
+ +.... . ....+|.|.+++.+|+|.|+|.|.|... ......+.|.|
T Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V 336 (438)
T 1qgc_4 257 QTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTV 336 (438)
T ss_dssp EETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEE
T ss_pred CCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEE
Confidence 7 32211 0 1124899999999999999999998321 12334567777
Q ss_pred c----CCCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCC
Q psy17146 627 K----GRPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH 700 (1011)
Q Consensus 627 ~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 700 (1011)
. .+|.+. .++...+.+|+.++|.|.+.|. |.|+.|.|+++|..+....... +... ......+.|.|.++..
T Consensus 337 ~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~--~~~~-g~~~~~s~L~i~~~~~ 413 (438)
T 1qgc_4 337 SAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA--VLQS-DLYTLSSSVTVPSSTW 413 (438)
T ss_dssp CSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCC--EEET-TEEEEEEEEEEEEEHH
T ss_pred ecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCc--cccC-CcEEEEEEEEEehhhc
Confidence 6 356654 3334457789999999999998 8777899999998875321111 1111 0011245799999998
Q ss_pred CCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 701 DHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 701 ~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
+| |.|+|.|.|..|.......|.
T Consensus 414 ~d-g~Y~C~a~n~~g~~~~~~~i~ 436 (438)
T 1qgc_4 414 PS-ETVTCNVAHPASSTKVDKKIV 436 (438)
T ss_dssp HH-SCCEEEEEEGGGTEEEEEECC
T ss_pred CC-ceEEEEEEeCCCCcceeeecC
Confidence 89 999999999999887776654
No 37
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=8.8e-33 Score=299.56 Aligned_cols=260 Identities=24% Similarity=0.412 Sum_probs=216.0
Q ss_pred ecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee---------eccCCcEEEEeeccCCCeEEEEEEEEc
Q psy17146 389 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGRYYCKASVM 459 (1011)
Q Consensus 389 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~Y~C~a~n~ 459 (1011)
.+|.|...|.+..+.+|+.++|.|.+.|.|.+.+.|+|++..+. ......|.|.+++.+|+|.|+|.|.|.
T Consensus 4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~ 83 (284)
T 2rik_A 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 83 (284)
T ss_dssp CCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEEC
Confidence 47889999999999999999999999999999999999985432 123467999999999999999999974
Q ss_pred CCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEE
Q psy17146 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETL 539 (1011)
Q Consensus 460 ~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l 539 (1011)
.+ ..+..+.|
T Consensus 84 ~g----------------------------------------------------------------------~~~~~~~l 93 (284)
T 2rik_A 84 AG----------------------------------------------------------------------KDSCSAQL 93 (284)
T ss_dssp TE----------------------------------------------------------------------EEEEEEEE
T ss_pred Cc----------------------------------------------------------------------eEEEEEEE
Confidence 32 22233344
Q ss_pred EEEecceeecCC-ceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee---------cCCCcEEEeecCCCCCEEEEEE
Q psy17146 540 DVTYGPRFRARP-YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV---------GNSPNLTLLMTSDDLAGRYYCK 609 (1011)
Q Consensus 540 ~V~~~P~~~~~p-~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~---------~~~~~L~I~~v~~~d~G~Y~C~ 609 (1011)
.|..+|.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. .....|.|.++..+|+|.|+|.
T Consensus 94 ~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 173 (284)
T 2rik_A 94 GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173 (284)
T ss_dssp EEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred EccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEE
Confidence 555666655443 356688999999999999999999999999855432 2346799999999999999999
Q ss_pred EEecCCCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcc
Q psy17146 610 ASVMGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688 (1011)
Q Consensus 610 a~n~~~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~ 688 (1011)
|.| ..+..+..+.|.|..+|.+.. +....+.+|+.++|.|.+.|.|.| .+.|+++|..+.. ..++.+.. .+
T Consensus 174 a~n-~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~v~W~~~~~~~~~--~~~~~~~~----~~ 245 (284)
T 2rik_A 174 AHN-AAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPF-QVSWHKDKRELRS--GKKYKIMS----EN 245 (284)
T ss_dssp EEC-SSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCC-EEEEEETTEEECB--TTTEEEEE----ET
T ss_pred EEc-CCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCC-EEEEEECCEECcC--CCCEEEEE----cC
Confidence 999 577888899999999999874 456678999999999999999999 9999999999974 45565554 33
Q ss_pred ceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 689 ~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
..+.|.|.++..+|+|.|+|.|.|.+|+.+..+.|.|+
T Consensus 246 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 246 FLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 45799999999999999999999999999999999885
No 38
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=100.00 E-value=2.8e-32 Score=315.90 Aligned_cols=373 Identities=15% Similarity=0.197 Sum_probs=233.5
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC--Cc---------ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG--PH---------RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~--~~---------~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
..|..+.+.+|++|+|.|.+.+. .+.+.|+|++ ..+. .. ......+|+.+..+...+.++|+|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (444)
T 1igt_B 5 QESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMS 84 (444)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEEC
T ss_pred ecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEEC
Confidence 35677899999999999999864 4589999864 2210 00 0011236888877655678899999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC-CCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCC
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP-PDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGT 172 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~-p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~ 172 (1011)
+++.+|+|.|+|.+.+.... ....+..+.|+|... +.+|.+. ..+...+.+|+.+.|.|.+.+..|.+ .++|+|++
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~-~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 163 (444)
T 1igt_B 85 RLKSEDTAMYYCARHGGYYA-MDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS 163 (444)
T ss_dssp SCCGGGCEEEEEEEECSSSC-EEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCCHHHCEEEEEEEecCCcc-cccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCC
Confidence 99999999999999885321 112334467888742 2334433 23333457899999999955446876 99999988
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCc
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGT 252 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~ 252 (1011)
..+...... ..... ..+...+.|.|.++..+| |.|+|.|.|..+.......+.+ ...... ...
T Consensus 164 ~~~~~~~~~--~~~~~-~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~--~~~~~~--------~~~--- 226 (444)
T 1igt_B 164 LSSGVHTFP--AVLQS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEP--RGPTIK--------PCP--- 226 (444)
T ss_dssp BCTTEEECC--CEEET-TEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCC--CCCSCC--------CCC---
T ss_pred CCCCeEecC--ccccC-CcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEecc--CCCCcc--------cCC---
Confidence 763211000 00112 344455789999999999 9999999999886532222221 000000 000
Q ss_pred eEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcc--cccCCcEEEEEEeecC
Q psy17146 253 DVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNR--LVEGTDVRLYCKAEAN 330 (1011)
Q Consensus 253 ~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~--v~~g~~v~l~C~~~~~ 330 (1011)
...|.+......+.+... .+... +.+|++++|.|.+.+.
T Consensus 227 --~~~~~~~~~~~~p~v~~~-------------------------------------~p~~~~~~~~G~~~~L~C~~~g~ 267 (444)
T 1igt_B 227 --PCKCPAPNLLGGPSVFIF-------------------------------------PPKIKDVLMISLSPIVTCVVVDV 267 (444)
T ss_dssp --CCSCCCSCCCCCCEEEEE-------------------------------------CCCHHHHHCTTSCCEEEEEEEEE
T ss_pred --ccccCCcccCCCceEEec-------------------------------------CCchhheeecCCCcEEEEEEeec
Confidence 000000000000111000 01112 4778888888888887
Q ss_pred C---CccEEEEEECCeecCCCc-------------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEE----EEEec
Q psy17146 331 P---SHMKYRWYINDQPVPAAA-------------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETL----DVTYG 390 (1011)
Q Consensus 331 p---~~~~i~W~k~g~~l~~~~-------------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l----~V~~~ 390 (1011)
+ ++..++|+|+|..+.... ....|.|.++..+ |+|.|+|.|.|..|.......+ .+..+
T Consensus 268 ~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~-d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~ 346 (444)
T 1igt_B 268 SEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWM-SGKEFKCKVNNKDLPAPIERTISKPKGSVRA 346 (444)
T ss_dssp CTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHH-TTCEEEEEEECTTCSSCEEEEEECCCCCCBC
T ss_pred ccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhc-cCCcEEEEEEcCCCCCceEEEEeccCCCCCC
Confidence 3 335889999888765421 1247999999987 9999999999998876333333 44567
Q ss_pred ceEeeCCCceEecCCCcEEEEeecCC-CCCC-ceEEEeCCCcee--------eccCCc------EEEEeeccCCCeEEEE
Q psy17146 391 PRFRARPYSVQVDRGAGVNLLCDVDG-NPAP-EITWIHEDSDKV--------VGNSPN------LTLLMTSDDLAGRYYC 454 (1011)
Q Consensus 391 P~~~~~p~~~~v~~G~~v~l~C~~~g-~p~p-~v~W~k~~~~~~--------~~~~~~------L~I~~v~~~d~G~Y~C 454 (1011)
|.+...+......+++.++|.|.+.| .|.+ .|+|+|++..+. ....+. |.|.....+|.|.|+|
T Consensus 347 P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC 426 (444)
T 1igt_B 347 PQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSC 426 (444)
T ss_dssp CEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEE
T ss_pred CEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEE
Confidence 87765443222233445999999988 5665 899999985431 122333 3444445567999999
Q ss_pred EEEEcCCc
Q psy17146 455 KASVMGFP 462 (1011)
Q Consensus 455 ~a~n~~~~ 462 (1011)
.|.|....
T Consensus 427 ~a~n~~l~ 434 (444)
T 1igt_B 427 SVVHEGLH 434 (444)
T ss_dssp EEECTTSG
T ss_pred EEECCCcC
Confidence 99996543
No 39
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=100.00 E-value=3e-31 Score=288.60 Aligned_cols=261 Identities=21% Similarity=0.350 Sum_probs=210.2
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCC-CCceEEEe-CCCcee-----------eccCCcEEEEeeccCCCeEEEEEE
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIH-EDSDKV-----------VGNSPNLTLLMTSDDLAGRYYCKA 456 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p-~p~v~W~k-~~~~~~-----------~~~~~~L~I~~v~~~d~G~Y~C~a 456 (1011)
++.+...|.+..+.+|+.+.|.|.+.+.| .+.+.|+| ++.... ......|.|.+++.+|+|.|+|.|
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~ 81 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence 46677888899999999999999999987 68999999 553221 113457999999999999999999
Q ss_pred EEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCccc
Q psy17146 457 SVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDS 536 (1011)
Q Consensus 457 ~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~ 536 (1011)
.|..+...+..+.
T Consensus 82 ~n~~g~~~~~~~~------------------------------------------------------------------- 94 (291)
T 1qz1_A 82 TAEDGTQSEATVN------------------------------------------------------------------- 94 (291)
T ss_dssp ECTTSCEEEEEEE-------------------------------------------------------------------
T ss_pred EcCCCCeeEEEEE-------------------------------------------------------------------
Confidence 9764433333333
Q ss_pred EEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEE
Q psy17146 537 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYC 608 (1011)
Q Consensus 537 ~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C 608 (1011)
|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++.|.|.++..+|+|.|+|
T Consensus 95 --l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 172 (291)
T 1qz1_A 95 --VKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172 (291)
T ss_dssp --EEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEE
T ss_pred --EEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEE
Confidence 344556666677778889999999999999999999999999986542 3456789999999999999999
Q ss_pred EEEecC-CCceeeEEEEEEcCCCeeecC---CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC--CCeEEec
Q psy17146 609 KASVMG-FPEVGAEATVYLKGRPTIISH---RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS--DDYSVLE 682 (1011)
Q Consensus 609 ~a~n~~-~~~~s~~~~l~V~~~P~i~~~---~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~--~~~~~~~ 682 (1011)
.|.|.. .......+.|.|..+|.+... ....+..|+.++|.|.+.|.|.| .+.|+++|..+..... .++.+..
T Consensus 173 ~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~g~~~~~~~~~~~~~~~~~ 251 (291)
T 1qz1_A 173 EGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP-TMSWTKDGEPIENEEEDDEKHIFSD 251 (291)
T ss_dssp EEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCC-EEEEEETTEECCCC--CCSSEEECT
T ss_pred EEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCC-cEEEEECCEECcCCCCCCcceEEcC
Confidence 999943 333556788889889988743 24568899999999999999999 9999999999875332 2444432
Q ss_pred CCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 683 DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 683 ~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
..+.|.|.++..+|+|.|+|.|.|.+|..+..+.|.|.
T Consensus 252 ------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 289 (291)
T 1qz1_A 252 ------DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289 (291)
T ss_dssp ------TSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ------CCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence 24789999999999999999999999999999999885
No 40
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.98 E-value=2.7e-31 Score=302.18 Aligned_cols=291 Identities=20% Similarity=0.262 Sum_probs=228.0
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEec--CCce-----------ee---cCCCcEEEeecCCCCCEEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE--DSDK-----------VV---GNSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~--~~~~-----------~~---~~~~~L~I~~v~~~d~G~Y~ 607 (1011)
+|.|.. +.+..+.+|+.++|.|.+.|.|.|.+.|+|+ +..+ .. ...+.|.|.++..+|+|.|+
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 79 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence 366666 5677788899999999999999999999999 4222 11 12468999999999999999
Q ss_pred EEEEecCCCceeeEEEEEEcCCCeeecCCc-eeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcC
Q psy17146 608 CKASVMGFPEVGAEATVYLKGRPTIISHRT-QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686 (1011)
Q Consensus 608 C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~-~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~ 686 (1011)
|.|.| ..|..+..+.|.|..+|.|..+.. ..+.+|+.+.|.|.+.|.|.+ .+.|+++|..+......++.+..
T Consensus 80 C~a~n-~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~i~W~~~g~~l~~~~~~~~~~~~---- 153 (389)
T 2jll_A 80 CEAAS-RIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPA-SIHWRRDKLVLPAKNTTNLKTYS---- 153 (389)
T ss_dssp EEEEC-SSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCC-EEEEEETTEESSCTTCTTEEEEE----
T ss_pred EEEEe-CCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCC-eEEEEECCccCCcccCceEEEec----
Confidence 99999 577789999999999999986544 468899999999999999998 99999999999865545666654
Q ss_pred ccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCCCC
Q psy17146 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGN 766 (1011)
Q Consensus 687 ~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~ 766 (1011)
.+..+.|.|.++..+|+|.|+|.|.|..|..+..+.|.+. ..+.+|..
T Consensus 154 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~--------------------------------~~P~~P~~ 201 (389)
T 2jll_A 154 TGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA--------------------------------DVPSSPYG 201 (389)
T ss_dssp CSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEEC--------------------------------CCCCCCEE
T ss_pred cCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEec--------------------------------CCCCCCcc
Confidence 3345789999999999999999999999998888887762 23446777
Q ss_pred Ccccccccccccccc--cCCCCCCCCcCcceeeecCcc--------------------cccccccc---c---CCCCCCC
Q psy17146 767 GIEHHVTADGEKNQC--KESDNSSNISDIKLEFRTGSS--------------------VSNVHLDY---A---GHDSETG 818 (1011)
Q Consensus 767 ~~~~~~~~~s~~~~W--~~~d~~s~I~~Y~ve~~~~~~--------------------~p~~~Y~f---A---~G~g~~s 818 (1011)
+.+......++.++| +..+++.+|..|.|+++.... .|++.|.| | .|.|.+|
T Consensus 202 ~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s 281 (389)
T 2jll_A 202 VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281 (389)
T ss_dssp EEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCC
T ss_pred eEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCC
Confidence 778888888999999 556778899999999886432 77788999 4 7888888
Q ss_pred -cccccccccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 819 -SESVHTRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 819 -s~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
...+.|.+..|..+|. +.... .+.+...++|+|+ ...||++.+|+|+||+.+...
T Consensus 282 ~~~~~~t~~~~~p~~p~-~~~~~---~~~~~v~l~W~~p--~~~~~~i~~Y~v~~~~~~~~~ 337 (389)
T 2jll_A 282 KIEIFQTLPVREPSPPS-IHGQP---SSGKSFKLSITKQ--DDGGAPILEYIVKYRSKDKED 337 (389)
T ss_dssp CCEEEECCCCCCCCCCC-EEEEE---ETTTEEEEEECCC--CCCSSCCCEEEEEEEC-----
T ss_pred cceEEEecCCCCCCCCc-ccccc---CcCCEEEEEEECC--CCCCCcccEEEEEEEeCCCCc
Confidence 4456676665666664 22211 1344456699984 457789999999999865443
No 41
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.98 E-value=2.7e-30 Score=279.91 Aligned_cols=272 Identities=20% Similarity=0.329 Sum_probs=204.7
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
..+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. ..++.+... .+..+|.|.+++.+|+|
T Consensus 3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~------~~~~~~~~~--~~~~~L~i~~v~~~d~G 74 (284)
T 2rik_A 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP------GGNYKMTLV--ENTATLTVLKVTKGDAG 74 (284)
T ss_dssp CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCS------SSSEEEEEE--TTEEEEEESSCCGGGCE
T ss_pred cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcC------CCcEEEEEc--CCEEEEEEecCCcccCE
Confidence 45799999999999999999999999997 5679999999987643 234444322 24568999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEE
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~ 183 (1011)
.|+|.+.+.. +..+..+.|.|..+|... ....+...+.+|+.+.|.|. +.+.|.+.+.|+|++..+....++..
T Consensus 75 ~Y~C~~~n~~----g~~~~~~~l~V~~~p~~~-~~~~~~~~v~~g~~~~l~C~-~~g~p~~~v~W~~~~~~~~~~~~~~~ 148 (284)
T 2rik_A 75 QYTCYASNVA----GKDSCSAQLGVQEPPRFI-KKLEPSRIVKQDEHTRYECK-IGGSPEIKVLWYKDETEIQESSKFRM 148 (284)
T ss_dssp EEEEEEEETT----EEEEEEEEEEEECCCEEE-ECCCSEEEEETTCCEEEEEE-EESSSCCEEEEEETTEECCCSSSEEE
T ss_pred EEEEEEEECC----ceEEEEEEEEccCCCccc-ccCCCceEecCCceEEEEEE-EeeeCCCEEEEEECCEECcCCCcEEE
Confidence 9999999853 345677888888765321 12234566889999999999 67889999999999988866554433
Q ss_pred eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccC
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEAN 263 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~ 263 (1011)
..... ...|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+... +.
T Consensus 149 ~~~~~------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~~~~~-~~------------------- 200 (284)
T 2rik_A 149 SFVES------VAVLEMYNLSVEDSGDYTCEAHNAAGSA--SSSTSLKVKEPPVFRKK-PH------------------- 200 (284)
T ss_dssp EEETT------EEEEEECSCCGGGCEEEEEEEECSSCEE--EEEEEEEEECCCBCCSC-CC-------------------
T ss_pred EEcCC------EEEEEECCCCcccCEEEEEEEEcCCCce--eEEEEEEEecCCcceeC-CC-------------------
Confidence 32222 3689999999999999999999998865 55667777777654321 11
Q ss_pred CCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCe
Q psy17146 264 PSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQ 343 (1011)
Q Consensus 264 ~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~ 343 (1011)
...+.+|+.++|.|.+.+.|.+ .+.|++++.
T Consensus 201 ------------------------------------------------~~~~~~g~~v~l~C~~~g~p~~-~v~W~~~~~ 231 (284)
T 2rik_A 201 ------------------------------------------------PVETLKGADVHLECELQGTPPF-QVSWHKDKR 231 (284)
T ss_dssp ------------------------------------------------CEEECTTCCEEEEEECBSSSCC-EEEEEETTE
T ss_pred ------------------------------------------------cceecCCCeEEEEEEEEecCCC-EEEEEECCE
Confidence 1234556666666666666554 677777766
Q ss_pred ecCCC--------cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEE
Q psy17146 344 PVPAA--------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388 (1011)
Q Consensus 344 ~l~~~--------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 388 (1011)
.+... .....|.|.++..+ |+|.|+|.|.|..|..+.++.|.|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 232 ELRSGKKYKIMSENFLTSIHILNVDSA-DIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp EECBTTTEEEEEETTEEEEEECSCCGG-GCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ECcCCCCEEEEEcCCEEEEEEcCCCcc-cCEEEEEEEEeCCCceeEEEEEEEc
Confidence 66543 12358999999998 9999999999999999888888874
No 42
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.97 E-value=6.5e-31 Score=287.90 Aligned_cols=264 Identities=20% Similarity=0.310 Sum_probs=196.7
Q ss_pred EecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceee--------cc--CCcEEEEeecc-CCCeEEEEEE
Q psy17146 388 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------GN--SPNLTLLMTSD-DLAGRYYCKA 456 (1011)
Q Consensus 388 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~--------~~--~~~L~I~~v~~-~d~G~Y~C~a 456 (1011)
..+|.|...|.+..+.+|+.++|.|.+.|.|.+.+.|+|++..+.. .. ...|.|.+++. +|+|.|+|.|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a 83 (304)
T 2yd9_A 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVA 83 (304)
T ss_dssp CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEE
T ss_pred ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEE
Confidence 3578999999999999999999999999999999999999854321 11 14699999998 9999999999
Q ss_pred EEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCccc
Q psy17146 457 SVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDS 536 (1011)
Q Consensus 457 ~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~ 536 (1011)
.|..+. .+..+.|.|..++....
T Consensus 84 ~n~~g~-~~~~~~l~V~~~~~~p~-------------------------------------------------------- 106 (304)
T 2yd9_A 84 QNSVGE-ITVHAKLTVLREDQLPS-------------------------------------------------------- 106 (304)
T ss_dssp ECSSCE-ECCEEEEEEECGGGCCT--------------------------------------------------------
T ss_pred ECCCCe-EEEEEEEEEeccccCCC--------------------------------------------------------
Confidence 975332 33444444432211000
Q ss_pred EEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee---------ecCCCcEEEeecCCCCCEEEE
Q psy17146 537 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 537 ~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~Y~ 607 (1011)
..|.+...|....+.+|+.+.|.|.+.|.|.+.+.|+|++..+. ...++.|.|.++..+|+|.|+
T Consensus 107 ------~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 180 (304)
T 2yd9_A 107 ------GFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180 (304)
T ss_dssp ------TCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEE
T ss_pred ------CCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEE
Confidence 01566677778889999999999999999999999999985432 344679999999999999999
Q ss_pred EEEEecCCCcee-eEEEEEEc---CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEec
Q psy17146 608 CKASVMGFPEVG-AEATVYLK---GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLE 682 (1011)
Q Consensus 608 C~a~n~~~~~~s-~~~~l~V~---~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~ 682 (1011)
|.|.|. .+... ..+.|.|. .+|.+. .+....+.+|+.++|.|.+.|.|.| .|.|+++|..+.... ++.
T Consensus 181 C~a~n~-~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~l~~~~--~~~--- 253 (304)
T 2yd9_A 181 CVATNS-AGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMP-YVKWMQGAEDLTPED--DMP--- 253 (304)
T ss_dssp EEEEET-TEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCC-EEEEEETTEECSCSS--SCC---
T ss_pred EEEEeC-CCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCC-EEEEEECCEECCCcc--ccc---
Confidence 999994 44433 22455553 567776 4456678999999999999999999 999999999987422 211
Q ss_pred CCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 683 DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 683 ~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
.....|.|.++ +|+|.|+|.|.|.+|..+.++.|.|.+.
T Consensus 254 -----~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 292 (304)
T 2yd9_A 254 -----VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSL 292 (304)
T ss_dssp -----BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC----
T ss_pred -----CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecC
Confidence 12356888776 5899999999999999999999998643
No 43
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.97 E-value=2.8e-30 Score=301.60 Aligned_cols=378 Identities=15% Similarity=0.213 Sum_probs=234.1
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecC---C--------cccCCCCcceEEeecCCCceeEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALG---P--------HRNLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~---~--------~~~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
...+|..+.+.+|++|+|.|.+.+. ...+.|+|+.. .+. . .......+|+.+..+...+.++|+
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 83 (475)
T 1iga_A 4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMG 83 (475)
T ss_pred eeccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEE
Confidence 4457889999999999999999863 45899999642 110 0 001112468888766556778999
Q ss_pred EeecccCCCceEEEEEEeCCCCCcc--eeeeEEEEEEEc-CCCCCeeecCCeeeecCCCcEEEEEEccCCCCC-c-EEEE
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPA--IRSRFATLTVLV-PPDPPRIVQGDTLYTTEDREIELECISANGKPP-A-EITW 168 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~--~~s~~~~l~V~~-~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~-~-~i~W 168 (1011)
|.+++.+|+|.|+|.+.+..+.... .....+.|+|.. .+.+|.+.......+.+|+.+.|.|.+.+..|. + .|+|
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P~~p~~v~W 163 (475)
T 1iga_A 84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTW 163 (475)
T ss_pred ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeecCCCceEEEE
Confidence 9999999999999999885421100 233456788874 334455543322334689999999995444476 5 9999
Q ss_pred EeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCccee
Q psy17146 169 IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRL 248 (1011)
Q Consensus 169 ~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v 248 (1011)
+|++...... .........+..+...+.|.|.++..+|+|.|+|.|.|..+.. .+..+.+.|...+...
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~-~~~~v~l~V~~~~~~~--------- 232 (475)
T 1iga_A 164 SESGQGVTAR-NFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS-QDVTVPCPVPSTPPTP--------- 232 (475)
T ss_pred cCCCcccceE-eCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc-eeeeEecccccCcccc---------
Confidence 9987432111 0000010122344555789999999999999999999988632 3444444442211100
Q ss_pred ecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEee
Q psy17146 249 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAE 328 (1011)
Q Consensus 249 ~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~ 328 (1011)
+.....|.+... ..+.+. . .......+.+|+.++|.|.+.
T Consensus 233 ---~~~~~~~~~~~~-~~p~v~-~-----------------------------------~~p~~~~~~~G~~v~L~C~~~ 272 (475)
T 1iga_A 233 ---SPSTPPTPSPSC-CHPRLS-L-----------------------------------HRPALEDLLLGSEANLTCTLT 272 (475)
T ss_pred ---cccccccCCCCC-CCcEEE-E-----------------------------------cCCChHHhccCCceEEEEEEE
Confidence 000000111000 000000 0 000112246777788888777
Q ss_pred cCCC--ccEEEEEECCeecCCC-------------cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEE---EEec
Q psy17146 329 ANPS--HMKYRWYINDQPVPAA-------------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLD---VTYG 390 (1011)
Q Consensus 329 ~~p~--~~~i~W~k~g~~l~~~-------------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~---V~~~ 390 (1011)
+.++ ++.+.| ++..+... .....|.|.++... |+|.|+|.|.|..|.......|. +..+
T Consensus 273 g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~-d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~ 349 (475)
T 1iga_A 273 GLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWN-HGKTFTCTAAYPESKTPLTATLSKSGNTFR 349 (475)
T ss_pred cccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhc-cCCcEEEEEEcCCCCCceEEEeecCCCCCC
Confidence 6643 247788 33332210 12346999999987 99999999999988765545553 3567
Q ss_pred ceEeeCC-CceEecCCCcEEEEeecCCCCC--CceEEEeCCCceee----------c---cCC------cEEEEeeccCC
Q psy17146 391 PRFRARP-YSVQVDRGAGVNLLCDVDGNPA--PEITWIHEDSDKVV----------G---NSP------NLTLLMTSDDL 448 (1011)
Q Consensus 391 P~~~~~p-~~~~v~~G~~v~l~C~~~g~p~--p~v~W~k~~~~~~~----------~---~~~------~L~I~~v~~~d 448 (1011)
|.+...+ ....+.+|+.+.|.|.+.|.++ +.|+|+|+|..+.. . ..+ .|.|.....+|
T Consensus 350 P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~ 429 (475)
T 1iga_A 350 PEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKK 429 (475)
T ss_pred CeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcC
Confidence 8776544 3334788999999999988643 49999999854321 1 122 24455555678
Q ss_pred CeEEEEEEEEcCC
Q psy17146 449 AGRYYCKASVMGF 461 (1011)
Q Consensus 449 ~G~Y~C~a~n~~~ 461 (1011)
.|.|+|.|.|.+.
T Consensus 430 ~g~YtC~a~n~~l 442 (475)
T 1iga_A 430 GDTFSCMVGHEAL 442 (475)
T ss_pred CCEEEEEEEcCCC
Confidence 9999999998643
No 44
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.97 E-value=5e-31 Score=306.57 Aligned_cols=371 Identities=15% Similarity=0.216 Sum_probs=226.1
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecCC--c---------ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALGP--H---------RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~~--~---------~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
..|..+.+.+|++|+|.|.+.+. .+.+.|+|+.. .+.. . ......+|+.+..+...+.++|+|.
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (457)
T 1hzh_H 5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR 84 (457)
T ss_dssp EECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred ecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEEC
Confidence 34677899999999999999874 45899998532 1100 0 0011246888877655677899999
Q ss_pred ecccCCCceEEEEEEeCCC------C--CcceeeeEEEEEEEcCC-CCCeee-cCCeeeecCCCcEEEEEEccCCCCC-c
Q psy17146 96 PVMLDDDARYQCQVSTGIL------G--EPAIRSRFATLTVLVPP-DPPRIV-QGDTLYTTEDREIELECISANGKPP-A 164 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~------~--~~~~~s~~~~l~V~~~p-~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~-~ 164 (1011)
+++.+|+|.|+|.+.+..+ + ........+.|+|...+ .+|.+. ..+...+.+|+.+.|.|.+.+..|. +
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~ 164 (457)
T 1hzh_H 85 SLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV 164 (457)
T ss_dssp SCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCC
T ss_pred CCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCe
Confidence 9999999999999987532 0 00022344677777532 244443 3333446789999999995544475 8
Q ss_pred EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecC
Q psy17146 165 EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIG 244 (1011)
Q Consensus 165 ~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~ 244 (1011)
.++|+|++..+... ...... ..+..+...+.|.|.++..+| |.|+|.|.|..+...... .+.+...+.
T Consensus 165 ~v~W~k~~~~~~~~-~~~~~~-~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~--~v~~~~~~~------- 232 (457)
T 1hzh_H 165 TVSWNSGALTSGVH-TFPAVL-QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK--KAEPKSCDK------- 232 (457)
T ss_dssp EEEETTTTBCTTEE-EEEEEE-CTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEE--ECCCCCSCS-------
T ss_pred EEEEEeCCEeccce-EcCceE-CCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeE--EecccCCCc-------
Confidence 99999998654321 111111 222344555789999999999 999999999877543222 222211110
Q ss_pred cceeecCceEEEEEEcccCC---CccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCC-cccccCCc
Q psy17146 245 SNRLVEGTDVRLYCKAEANP---SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGS-NRLVEGTD 320 (1011)
Q Consensus 245 ~~~v~~g~~v~L~C~~~~~~---~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~-~~v~~g~~ 320 (1011)
.+.|.+...+ ..+.+.-. .... ..+.+|+.
T Consensus 233 ----------~~~~~~~~~~~~~~~p~v~~~------------------------------------~p~~~~~~~~G~~ 266 (457)
T 1hzh_H 233 ----------THTCPPCPAPELLGGPSVFLF------------------------------------PPKPKDTLMISRT 266 (457)
T ss_dssp ----------SCSCCSCCCCCCSSSCEEEEE------------------------------------CCCHHHHHCTTSC
T ss_pred ----------ccccCCCCCccccCCceEEeE------------------------------------CcCchhhcccCCc
Confidence 0001000000 00000000 0011 12567888
Q ss_pred EEEEEEeecCCCc---cEEEEEECCeecCCC-------cCccEEEEee---cccc--cCCcEEEEEEEcCCccceeeEEE
Q psy17146 321 VRLYCKAEANPSH---MKYRWYINDQPVPAA-------ASATELYLTN---ITRH--QHDSIVKCEVHNDVGKSEDSETL 385 (1011)
Q Consensus 321 v~l~C~~~~~p~~---~~i~W~k~g~~l~~~-------~~~~~L~I~~---~~~~--~d~G~Y~C~a~n~~g~~~~s~~l 385 (1011)
++|.|.+.+.+++ +.+.|+|++..+... .....|.|.. +... .|+|.|+|.|.|..+.......+
T Consensus 267 v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v 346 (457)
T 1hzh_H 267 PEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTI 346 (457)
T ss_dssp CCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEE
T ss_pred eEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEE
Confidence 8888888877542 488888888776532 1123344432 2233 14999999999876654433334
Q ss_pred E----EEecceEeeCCC-ceEecCCCcEEEEeecCCCCCC--ceEEEeCCCcee--------eccCCc------EEEEee
Q psy17146 386 D----VTYGPRFRARPY-SVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDKV--------VGNSPN------LTLLMT 444 (1011)
Q Consensus 386 ~----V~~~P~~~~~p~-~~~v~~G~~v~l~C~~~g~p~p--~v~W~k~~~~~~--------~~~~~~------L~I~~v 444 (1011)
. +..+|.+...+. ...+..|+ +.|.|.+.|.+++ .|+|+|+|..+. ....+. |.|...
T Consensus 347 ~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~ 425 (457)
T 1hzh_H 347 SKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKS 425 (457)
T ss_dssp CCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHH
T ss_pred EcccCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChH
Confidence 3 355787765443 33445555 9999999886544 899999985432 122233 333334
Q ss_pred ccCCCeEEEEEEEEcCC
Q psy17146 445 SDDLAGRYYCKASVMGF 461 (1011)
Q Consensus 445 ~~~d~G~Y~C~a~n~~~ 461 (1011)
..+|+|.|+|.|.|.+.
T Consensus 426 ~~~~~g~YtC~a~n~~l 442 (457)
T 1hzh_H 426 RWQQGNVFSCSVMHEAL 442 (457)
T ss_dssp HHHTTCCEEEEEECTTS
T ss_pred HccCCCeEEEEEEECCC
Confidence 44789999999999654
No 45
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.97 E-value=1.9e-30 Score=285.43 Aligned_cols=286 Identities=24% Similarity=0.420 Sum_probs=212.8
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCC------eeEEeeCCeecCC-------cccCCCCcceEEeecC---CCceeEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTG------VLQWTKDDFALGP-------HRNLSGFDRYAMIGSD---EEGDYSLE 93 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~------~v~W~k~~~~l~~-------~~~~~~~~r~~i~~~~---~~~~~~L~ 93 (1011)
+...|.++.+..|++|+|.|.+.++.. .+.|+|++..... ...+....|+.+.... ..++++|+
T Consensus 3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~ 82 (313)
T 4fqp_A 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR 82 (313)
T ss_dssp EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence 455788999999999999999987432 4899999864321 1122334566665432 23557899
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCc
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTG 173 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~ 173 (1011)
|.+++.+|+|.|+|++.+... +..+..+.|+|...|.. ........+.+|+.+.+.|.+..++|.+.++|++++.
T Consensus 83 I~~v~~~D~G~Y~C~v~~~~~---~~~~~~~~l~v~~~P~~--~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~ 157 (313)
T 4fqp_A 83 MFGLRVEDEGNYTCLFVTFPQ---GSRSVDIWLRVLAKPQN--TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG 157 (313)
T ss_dssp ECSCCGGGCEEEEEEEECSSS---CEEEEEEEECCBBCCEE--EEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTC
T ss_pred ECcCChhhCEEEEEEEeeccC---cceeeeeeeeeccCCcc--eecccceEeecCceEEEEEEccCccCCcEEEeecCCc
Confidence 999999999999999865432 33556667776665532 2233345567788999999877899999999999998
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCce
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTD 253 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~ 253 (1011)
.+...... .......+...+.|.|.+...+|+|.|+|.|.|..+....+..+.|.|.++|.+.+....
T Consensus 158 ~~~~~~~~---~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~--------- 225 (313)
T 4fqp_A 158 GMPNTSQV---PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYD--------- 225 (313)
T ss_dssp CEEEEEEE---ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCC---------
T ss_pred ccccccee---eeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCcccccccc---------
Confidence 88654433 222333455667899999999999999999999888776777788888777766544332
Q ss_pred EEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCc
Q psy17146 254 VRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSH 333 (1011)
Q Consensus 254 v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~ 333 (1011)
...+.+|+.++|.|.+.++|.|
T Consensus 226 ----------------------------------------------------------~~~~~~g~~v~l~C~~~g~P~p 247 (313)
T 4fqp_A 226 ----------------------------------------------------------NNWYLGQNEATLTCDARSNPEP 247 (313)
T ss_dssp ----------------------------------------------------------SCEETTCCCEEEEEEEEEESCC
T ss_pred ----------------------------------------------------------ceeecCCCeEEEEEEecCCCCC
Confidence 2334566777888888887776
Q ss_pred cEEEEEECCeecCCC--cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecc
Q psy17146 334 MKYRWYINDQPVPAA--ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGP 391 (1011)
Q Consensus 334 ~~i~W~k~g~~l~~~--~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P 391 (1011)
..|.|+|+|..+... ..+..|.|.++..+ |+|.|+|.|.|..|..+.++.|.|.++|
T Consensus 248 ~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 306 (313)
T 4fqp_A 248 TGYNWSTTMGPLPPFAVAQGAQLLIRPVDKP-INTTLICNVTNALGARQAELTVQVKEGP 306 (313)
T ss_dssp CEEEEEETTBSCCTTEEEETTEEEECCCSSC-CEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred cEEEEEECCEECCCceEEeCCEEEECcCChh-hCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence 678888888877653 34568999999998 9999999999999999999999998765
No 46
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.97 E-value=2.5e-30 Score=294.17 Aligned_cols=325 Identities=22% Similarity=0.270 Sum_probs=236.5
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeC--CCce-----------ee---ccCCcEEEEeeccCCCeEEE
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE--DSDK-----------VV---GNSPNLTLLMTSDDLAGRYY 453 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~--~~~~-----------~~---~~~~~L~I~~v~~~d~G~Y~ 453 (1011)
+|.|.. +.+..+.+|+.+.|.|.+.|.|.+.|+|+|+ +..+ .. .....|.|.+++.+|+|.|+
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 79 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence 366665 5567888999999999999999999999999 4221 11 12457999999999999999
Q ss_pred EEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCC
Q psy17146 454 CKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKS 533 (1011)
Q Consensus 454 C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~ 533 (1011)
|.|.|. .|..
T Consensus 80 C~a~n~----------------------------------------------------------------------~g~~ 89 (389)
T 2jll_A 80 CEAASR----------------------------------------------------------------------IGGH 89 (389)
T ss_dssp EEEECS----------------------------------------------------------------------SCEE
T ss_pred EEEEeC----------------------------------------------------------------------CCCc
Confidence 999953 3444
Q ss_pred cccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec-----------CCCcEEEeecCCCC
Q psy17146 534 EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG-----------NSPNLTLLMTSDDL 602 (1011)
Q Consensus 534 ~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~-----------~~~~L~I~~v~~~d 602 (1011)
+..+.|.|..+|.|...+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+... ....|.|.++..+|
T Consensus 90 ~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d 169 (389)
T 2jll_A 90 QKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDND 169 (389)
T ss_dssp EEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTS
T ss_pred ceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhh
Confidence 4556677778888887777778999999999999999999999999998543221 23579999999999
Q ss_pred CEEEEEEEEecCCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEec--CCC---CeEEEEECCeEecccCCCC
Q psy17146 603 AGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI--PPP---EKVTWSYRGEEIGVGSSDD 677 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~--p~p---~~v~W~~~g~~l~~~~~~~ 677 (1011)
+|.|+|.|.| ..|..+..+.|.|..+|............+..+.|.|..... ..| ..+.|.+++....
T Consensus 170 ~G~Y~C~a~N-~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~------ 242 (389)
T 2jll_A 170 FGRYNCTATN-HIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW------ 242 (389)
T ss_dssp SEEEEEEEEE-TTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCC------
T ss_pred CEEEEEEEEc-CCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCccc------
Confidence 9999999999 577778888888876664221111223346788999974221 112 1467877654211
Q ss_pred eEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeee
Q psy17146 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQR 757 (1011)
Q Consensus 678 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 757 (1011)
..+.. ......|.|.++...+.|.|+|.|.|..|....+..+.+...
T Consensus 243 ~~~~~----~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~----------------------------- 289 (389)
T 2jll_A 243 KIVRS----HGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTL----------------------------- 289 (389)
T ss_dssp EEEEC----STTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECC-----------------------------
T ss_pred EEeec----cCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEec-----------------------------
Confidence 11111 223468999999999999999999999996543332322110
Q ss_pred ccCCC-CCCCCcccccccccccccc-cCCCCCCCCcCcceeeecCcc---------------------cccccccc---c
Q psy17146 758 KVKKP-PPGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A 811 (1011)
Q Consensus 758 ~~~~~-~p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A 811 (1011)
...+| +| .+.....+.+++.|+| ++.+++++|++|.|+++.... .|++.|+| |
T Consensus 290 ~~~~p~~p-~~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~A 368 (389)
T 2jll_A 290 PVREPSPP-SIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITA 368 (389)
T ss_dssp CCCCCCCC-CEEEEEETTTEEEEEECCCCCCSSCCCEEEEEEEC-----CCBCCEECTTCCEEEECSCCTTCEEEEEEEE
T ss_pred CCCCCCCC-ccccccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCCcceeEeeccCCcceEEeCCcCCCCEEEEEEEE
Confidence 11234 44 4566667888999999 788899999999999987322 78889999 5
Q ss_pred ---CCCCCCCcccccccc
Q psy17146 812 ---GHDSETGSESVHTRI 826 (1011)
Q Consensus 812 ---~G~g~~ss~~~~t~~ 826 (1011)
.|.|++|...++|.+
T Consensus 369 ~n~~G~s~~s~~~~~T~~ 386 (389)
T 2jll_A 369 ANRLGYSEPTVYEFSMPP 386 (389)
T ss_dssp EC-CCBCCCEEEEEECCC
T ss_pred EcCCcCCCceeeEecCCC
Confidence 899999866666643
No 47
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=282.43 Aligned_cols=261 Identities=21% Similarity=0.354 Sum_probs=206.5
Q ss_pred ecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeC-CCcee------e---ccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 389 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE-DSDKV------V---GNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 389 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~-~~~~~------~---~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
.+|.+...+.+..+.+|+.++|.|.+.|.|. .+.|+++ +.... . +....|.|.+++.+|+|.|+|.|.|
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n 81 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 81 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence 3678888999999999999999999999875 9999994 43221 1 1124799999999999999999997
Q ss_pred cCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEE
Q psy17146 459 MGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSET 538 (1011)
Q Consensus 459 ~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~ 538 (1011)
..+...+..+ .
T Consensus 82 ~~g~~~~~~~---------------------------------------------------------------------~ 92 (291)
T 2wim_A 82 AKGQTQEATV---------------------------------------------------------------------V 92 (291)
T ss_dssp SSSCEEEEEE---------------------------------------------------------------------E
T ss_pred ccCceEEEEE---------------------------------------------------------------------E
Confidence 5433323333 3
Q ss_pred EEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEE
Q psy17146 539 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKA 610 (1011)
Q Consensus 539 l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a 610 (1011)
|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++.|.|.++..+|+|.|+|.|
T Consensus 93 l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~ 172 (291)
T 2wim_A 93 LEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEG 172 (291)
T ss_dssp EEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEE
T ss_pred EEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEE
Confidence 345556666667777889999999999999999999999999986543 234678999999999999999999
Q ss_pred EecCCC-ceeeEEEEEEcCCCeeecCC---ceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcC
Q psy17146 611 SVMGFP-EVGAEATVYLKGRPTIISHR---TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686 (1011)
Q Consensus 611 ~n~~~~-~~s~~~~l~V~~~P~i~~~~---~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~ 686 (1011)
.|...+ .....+.+.|..+|.+.... ...+.+|+.++|.|.+.|.|.| .+.|+++|..+.. ..++.+..
T Consensus 173 ~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~g~~~~~--~~~~~~~~---- 245 (291)
T 2wim_A 173 RVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP-AISWFRNGKLIEE--NEKYILKG---- 245 (291)
T ss_dssp EETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCC-EEEEEETTEECCC--TTTEEECS----
T ss_pred EECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCC-eEEEEECCEECcC--CccEEEcC----
Confidence 994323 34567788899999887543 4467899999999999999999 8999999999873 44555433
Q ss_pred ccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 687 ~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
..+.|.|.++..+|+|.|+|.|.|.+|.+++++.|.|.+.
T Consensus 246 --~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~ 285 (291)
T 2wim_A 246 --SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285 (291)
T ss_dssp --TTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC---
T ss_pred --CccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEe
Confidence 2468999999999999999999999999999999998654
No 48
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.97 E-value=4.8e-30 Score=279.05 Aligned_cols=277 Identities=18% Similarity=0.300 Sum_probs=206.8
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCC--CCeeEEee-CCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTK-DDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k-~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
+++.|.+.|.++.+.+|++++|.|.+.+. .+.+.|+| ++..+.. ...|+.+... .....+|.|.+++.+|+
T Consensus 1 r~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~-----~~~~~~~~~~-~~~~~~L~i~~~~~~D~ 74 (291)
T 1qz1_A 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-----NQQRISVVWN-DDDSSTLTIYNANIDDA 74 (291)
T ss_dssp -CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCS-----SCSSEEEEEE-ETTEEEEEECSCCGGGC
T ss_pred CCcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECcc-----CCceEEEEEc-CCCeEEEEEecCCCCCC
Confidence 46789999999999999999999999984 47999999 6655532 2245555432 23567899999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
|.|+|.+.+..+ ...+..+.|.|..++. ....+....+.+|+.+.|.|. +.+.|.+.+.|+|++..+.......
T Consensus 75 G~Y~C~~~n~~g---~~~~~~~~l~v~~~~~--~~~~~~~~~~~~g~~v~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~ 148 (291)
T 1qz1_A 75 GIYKCVVTAEDG---TQSEATVNVKIFQKLM--FKNAPTPQEFKEGEDAVIVCD-VVSSLPPTIIWKHKGRDVILKKDVR 148 (291)
T ss_dssp EEEEEEEECTTS---CEEEEEEEEEEECCSE--EEECCSSEEEETTSCEEECCE-EECSSCCEEEEEETTSCSSTTCCTT
T ss_pred EEEEEEEEcCCC---CeeEEEEEEEeecccc--ccCCCCcccccCCCeEEEEEE-eccCCCCEEEEEECCEEcccCCCce
Confidence 999999998643 2345667777775432 233445667889999999999 6688999999999998775422211
Q ss_pred EeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEccc
Q psy17146 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEA 262 (1011)
Q Consensus 183 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~ 262 (1011)
.....+ +.|.|.+++.+|+|.|+|.|.|..+.......+.|.|..+|.+......
T Consensus 149 ~~~~~~-------~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~------------------ 203 (291)
T 1qz1_A 149 FIVLSN-------NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSI------------------ 203 (291)
T ss_dssp EEECTT-------SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSE------------------
T ss_pred EEEccC-------CcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccc------------------
Confidence 112222 3799999999999999999999876555566777777766654321110
Q ss_pred CCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECC
Q psy17146 263 NPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIND 342 (1011)
Q Consensus 263 ~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g 342 (1011)
....+.+|+.++|.|.+.+.|.+ .+.|+++|
T Consensus 204 ------------------------------------------------~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~g 234 (291)
T 1qz1_A 204 ------------------------------------------------VNATANLGQSVTLVCDADGFPEP-TMSWTKDG 234 (291)
T ss_dssp ------------------------------------------------EEEETTSCCCEEEEEEEEEESCC-EEEEEETT
T ss_pred ------------------------------------------------cccccccCceEEEEEEEEEeCCC-cEEEEECC
Confidence 12346677888888888887776 78888888
Q ss_pred eecCCCc----------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEe
Q psy17146 343 QPVPAAA----------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY 389 (1011)
Q Consensus 343 ~~l~~~~----------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~ 389 (1011)
..+.... ....|.|.++..+ |+|.|+|.|.|..|..+.++.|.|..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 235 EPIENEEEDDEKHIFSDDSSELTIRNVDKN-DEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp EECCCC--CCSSEEECTTSCEEEECSCCGG-GCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EECcCCCCCCcceEEcCCCcEEEEEecChh-cCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 8776532 2468999999998 99999999999999998999998864
No 49
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.97 E-value=7e-31 Score=288.28 Aligned_cols=282 Identities=25% Similarity=0.349 Sum_probs=208.8
Q ss_pred CCceeEEecCcEEEEEEEcCCC--CeeEEeeCCeecCCc-----------ccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDKT--GVLQWTKDDFALGPH-----------RNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~~--~~v~W~k~~~~l~~~-----------~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
|.++++.+|++|+|.|.+.+.. +.+.|+|++...... ......+|+.+. ....+.++|+|.+++.+
T Consensus 6 ~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~~ 84 (308)
T 4fom_A 6 EPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFK-NYSLNDATITLHNIGFS 84 (308)
T ss_dssp CCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEES-CCSSSBCCEEECSCCGG
T ss_pred CCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEee-ccCCCceEEEEccCCHH
Confidence 3468999999999999987533 379999976432110 011112454443 22345678999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeecee
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVR 180 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~ 180 (1011)
|+|.|+|++.+... +..+..+.+.+...+..+.+..+..+...+|+.+.|.|.+..|+|.+.++|+|++..+.....
T Consensus 85 D~G~Y~C~a~n~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~ 161 (308)
T 4fom_A 85 DSGKYICKAVTFPL---GNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT 161 (308)
T ss_dssp GCEEEEEEEEETTT---EEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE
T ss_pred HCEEEEEEEeeCCC---cceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccc
Confidence 99999999988532 345677888888877766666666777778999999998778999999999999988765332
Q ss_pred EEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEc
Q psy17146 181 VTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKA 260 (1011)
Q Consensus 181 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~ 260 (1011)
. .........+.|.|.++..+|+|.|+|.|.|..+....+..+.|.|..+|.+.+....
T Consensus 162 ~-----~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~---------------- 220 (308)
T 4fom_A 162 S-----FPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYD---------------- 220 (308)
T ss_dssp E-----CTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCC----------------
T ss_pred e-----eeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccc----------------
Confidence 2 1223344557899999999999999999999988876777778777776655332221
Q ss_pred ccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEE
Q psy17146 261 EANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYI 340 (1011)
Q Consensus 261 ~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k 340 (1011)
...+.+|+.++|.|.+.+.|.|..+.|+|
T Consensus 221 ---------------------------------------------------~~~~~~g~~v~l~C~~~g~P~p~~v~W~k 249 (308)
T 4fom_A 221 ---------------------------------------------------GNWFVGRKGVNLKCNADANPPPFKSVWSR 249 (308)
T ss_dssp ---------------------------------------------------SCEETTCCSCEEECCEEEESCEEEEECCB
T ss_pred ---------------------------------------------------eeeeeccccEEEEEEEecCCCCcEEEEEE
Confidence 23345667777777777777666688888
Q ss_pred CCeecCCC---cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecce
Q psy17146 341 NDQPVPAA---ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPR 392 (1011)
Q Consensus 341 ~g~~l~~~---~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~ 392 (1011)
++..+... .....|.|.+++.+ |+|.|+|.|.|..|..+.++.|.|.++|.
T Consensus 250 ~~~~~~~~~~~~~~~~l~i~~v~~~-d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~ 303 (308)
T 4fom_A 250 LDGQWPDGLLASDNTLHFVHPLTFN-YSGVYICKVTNSLGQRSDQKVIYISDPPH 303 (308)
T ss_dssp SSSCCCSSCBCSTTEEECCSCCCSC-CCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred CCeECCCcEEEcCCeEEEECCCChh-hCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence 87766543 23455667888887 99999999999999999999999999885
No 50
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.97 E-value=2.9e-32 Score=314.75 Aligned_cols=356 Identities=15% Similarity=0.223 Sum_probs=225.1
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecC--Cc---------ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALG--PH---------RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~--~~---------~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
..+..+.+.+|++|+|.|.+.+. .+.+.|+|++. .+. .. ......+|+.+..+...+.++|+|.
T Consensus 4 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 83 (434)
T 1igy_B 4 QESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLS 83 (434)
T ss_dssp ECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEEC
T ss_pred ECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEEC
Confidence 35677899999999999999874 45899999742 210 00 0011235787765544456789999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC-CCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCC
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP-PDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGT 172 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~-p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~ 172 (1011)
+++.+|+|.|+|.+.+.. ...+..+.|+|... +.+|.+. ..+...+.+|+.+.|.|.+.+..|.+ .++|+|++
T Consensus 84 ~v~~~D~G~Y~C~~~~~~----~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~ 159 (434)
T 1igy_B 84 SLTSDDSAVYYCVREGEV----PYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS 159 (434)
T ss_dssp SBCGGGCSEECCCCSSSS----CCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTT
T ss_pred CCChHHCEEEEEEEEccc----cccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCC
Confidence 999999999999998742 12334467788642 2334333 23333457899999999955445876 99999998
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE-----E---e--CCceEEEe
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV-----K---Y--APKVQVSV 242 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v-----~---~--~P~~~~~~ 242 (1011)
..+... .. ...... ..+...+.|.|.++..+| |.|+|.|.|..+.......+.+.. . . .|.+.+..
T Consensus 160 ~~~~~~-~~-~~~~~~-~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~ 235 (434)
T 1igy_B 160 LSSGVH-TF-PAVLQS-DLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFP 235 (434)
T ss_dssp BCSSEE-EC-CCEECS-SCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEEC
T ss_pred cCCCeE-ec-CceecC-CcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeC
Confidence 753111 00 001112 344455789999999889 999999999988754333332210 0 0 02222211
Q ss_pred cCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEE
Q psy17146 243 IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVR 322 (1011)
Q Consensus 243 ~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~ 322 (1011)
+.... .+.+|+.++
T Consensus 236 p~~~~------------------------------------------------------------------~v~~G~~~~ 249 (434)
T 1igy_B 236 PKPKD------------------------------------------------------------------TLLITVTPK 249 (434)
T ss_dssp CCHHH------------------------------------------------------------------HHSTTSCCE
T ss_pred CChHH------------------------------------------------------------------hcccCCCcE
Confidence 11011 145555555
Q ss_pred EEEEeecCC---CccEEEEEECCeecCCC-------------cCccEEEEeecccccCCcEEEEEEEcCCcccee--eEE
Q psy17146 323 LYCKAEANP---SHMKYRWYINDQPVPAA-------------ASATELYLTNITRHQHDSIVKCEVHNDVGKSED--SET 384 (1011)
Q Consensus 323 l~C~~~~~p---~~~~i~W~k~g~~l~~~-------------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~--s~~ 384 (1011)
|.|.+.+.+ .+..+.|+|++..+... .....|.|.++..+ |+|.|+|.|.|..|.... .+.
T Consensus 250 L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~~~~~~~~~~v~ 328 (434)
T 1igy_B 250 VTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWL-NGKEFKCRVNSAAFPAPIEKTIS 328 (434)
T ss_dssp EEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHH-HTCCCBCCBCCSSCSSCCCCCCC
T ss_pred EEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHcc-CCCcEEEEEECCCCCCceeEEEe
Confidence 555555542 12356666665544321 12357899999887 999999999999886533 332
Q ss_pred E--EEEecceEeeCCCceEecCCCcEEEEeecCCC-CC-CceEEEeCCCceee--------ccCC------cEEEEeecc
Q psy17146 385 L--DVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PA-PEITWIHEDSDKVV--------GNSP------NLTLLMTSD 446 (1011)
Q Consensus 385 l--~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~-p~-p~v~W~k~~~~~~~--------~~~~------~L~I~~v~~ 446 (1011)
+ .+..+|.+...+......+|+.++|.|.+.|. |+ +.|+|+|++..+.. ...+ .|.|.....
T Consensus 329 ~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~ 408 (434)
T 1igy_B 329 KTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNW 408 (434)
T ss_dssp CCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHH
T ss_pred ccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhc
Confidence 2 44567777655444334567889999999885 43 38999999865421 1222 244555556
Q ss_pred CCCeEEEEEEEEcCCc
Q psy17146 447 DLAGRYYCKASVMGFP 462 (1011)
Q Consensus 447 ~d~G~Y~C~a~n~~~~ 462 (1011)
+|+|.|+|.|.|.+..
T Consensus 409 ~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 409 EAGNTFTCSVLHEGLH 424 (434)
T ss_dssp HTTCCEEEEEEETTSG
T ss_pred cCCCEEEEEEEcCCCC
Confidence 7899999999996543
No 51
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.97 E-value=5e-31 Score=305.43 Aligned_cols=350 Identities=14% Similarity=0.153 Sum_probs=224.5
Q ss_pred eeCCcccccCCcEEEEEEeecCC-CccEEEEEEC--CeecC------------------CC---------cCccEEEEee
Q psy17146 309 VIGSNRLVEGTDVRLYCKAEANP-SHMKYRWYIN--DQPVP------------------AA---------ASATELYLTN 358 (1011)
Q Consensus 309 ~~~~~~v~~g~~v~l~C~~~~~p-~~~~i~W~k~--g~~l~------------------~~---------~~~~~L~I~~ 358 (1011)
......+.+|++++|.|.+.+.+ ....+.|||+ +..+. .. .....|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (444)
T 1igt_B 6 ESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSR 85 (444)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred cCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECC
Confidence 34567899999999999998874 2348999985 22210 00 1135799999
Q ss_pred cccccCCcEEEEEEEcCCcc---ceeeEEEEEEe----cceEeeCCCceEecCCCcEEEEeecCCC-CCC-ceEEEeCCC
Q psy17146 359 ITRHQHDSIVKCEVHNDVGK---SEDSETLDVTY----GPRFRARPYSVQVDRGAGVNLLCDVDGN-PAP-EITWIHEDS 429 (1011)
Q Consensus 359 ~~~~~d~G~Y~C~a~n~~g~---~~~s~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~~~g~-p~p-~v~W~k~~~ 429 (1011)
++.+ |+|.|+|.|.|..+. ....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .+.|++++.
T Consensus 86 v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~ 164 (444)
T 1igt_B 86 LKSE-DTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL 164 (444)
T ss_dssp CCGG-GCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CCHH-HCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCC
Confidence 9998 999999999997654 23456777763 4554432222345899999999999885 776 999999986
Q ss_pred cee-------ec-----cCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeE
Q psy17146 430 DKV-------VG-----NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECS 497 (1011)
Q Consensus 430 ~~~-------~~-----~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~ 497 (1011)
... .. ....|.|.++..+| |.|+|.|.|..+.. .....+.+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~i~~~~~---------------------- 220 (444)
T 1igt_B 165 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST-KVDKKIEPRGP---------------------- 220 (444)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTE-EEEEECCCCCC----------------------
T ss_pred CCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCc-ceEEEeccCCC----------------------
Confidence 421 01 12347788888889 99999999965432 11111111000
Q ss_pred eeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEeccee-ecCCceEE-EcCCCcEEEEEEEecCC---
Q psy17146 498 AFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF-RARPYSVQ-VDRGAGVNLLCDVDGNP--- 572 (1011)
Q Consensus 498 ~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~-~~~p~~~~-v~~G~~~~l~C~~~g~p--- 572 (1011)
+.|+|.+. . .. ...+..+|.+ ...|.... +.+|+.++|.|.+.|.+
T Consensus 221 ------------------------~~~~~~~~--~--~~-~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p 271 (444)
T 1igt_B 221 ------------------------TIKPCPPC--K--CP-APNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDD 271 (444)
T ss_dssp ------------------------SCCCCCCC--S--CC-CSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTC
T ss_pred ------------------------CcccCCcc--c--cC-CcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCC
Confidence 00000000 0 00 0001123443 33333333 58899999999999984
Q ss_pred -CCeEEEEecCCceee--------------cCCCcEEEeecCCCCCEEEEEEEEecCCCce--eeEEEE--EEcCCCeee
Q psy17146 573 -APEITWIHEDSDKVV--------------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEV--GAEATV--YLKGRPTII 633 (1011)
Q Consensus 573 -~p~v~W~k~~~~~~~--------------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~--s~~~~l--~V~~~P~i~ 633 (1011)
.+.++|+|++..+.. ...+.|+|.++..+|+|.|+|.|.|. .+.. ...+.+ .+..+|.+.
T Consensus 272 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~-~~~~~~~~~v~~~~~~~~~P~v~ 350 (444)
T 1igt_B 272 PDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNK-DLPAPIERTISKPKGSVRAPQVY 350 (444)
T ss_dssp CCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECT-TCSSCEEEEEECCCCCCBCCEEE
T ss_pred CCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcC-CCCCceEEEEeccCCCCCCCEEE
Confidence 359999999854321 11247999999999999999999994 3333 334433 456788876
Q ss_pred c-C-CceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEE
Q psy17146 634 S-H-RTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSV 710 (1011)
Q Consensus 634 ~-~-~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a 710 (1011)
. + ....+..| .++|.|.+.|. |.++.|+|+|||..+............+ ......+.|.|.....+|.|.|+|.|
T Consensus 351 ~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~-g~~~~~s~l~i~~~~~~d~g~YtC~a 428 (444)
T 1igt_B 351 VLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSD-GSYFMYSKLRVEKKNWVERNSYSCSV 428 (444)
T ss_dssp EECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTT-SCEEEEEEEEEEHHHHHTCCCEEEEE
T ss_pred EeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCC-CCEEEEEEEEEChHHhcCCCeEEEEE
Confidence 2 2 22233444 59999999995 6666899999999884211111111111 00012456788887788899999999
Q ss_pred EcCCC
Q psy17146 711 SNPYG 715 (1011)
Q Consensus 711 ~N~~G 715 (1011)
.|..-
T Consensus 429 ~n~~l 433 (444)
T 1igt_B 429 VHEGL 433 (444)
T ss_dssp ECTTS
T ss_pred ECCCc
Confidence 99864
No 52
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=277.02 Aligned_cols=279 Identities=23% Similarity=0.374 Sum_probs=196.3
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeeccc-CCC
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVML-DDD 102 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~-~D~ 102 (1011)
..+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+. ..|+.+.........+|.|.+++. +|+
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~-------~~~~~~~~~~~~~~~~L~i~~~~~~~D~ 76 (304)
T 2yd9_A 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-------SQRFETIEFDESAGAVLRIQPLRTPRDE 76 (304)
T ss_dssp CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC--------------CTTEEEEEETTTTEEEEEECSCCTTTTC
T ss_pred ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECC-------CCceEEEEecCCCceEEEEecccccCCC
Confidence 45799999999999999999999999987 667999999997762 235555443333457899999998 999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCC----CCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPD----PPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS 177 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~----~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~ 177 (1011)
|.|+|.+.+.. +..+..+.|.|...+. .|.+. .+....+.+|+.+.|.|. +.|.|.+.+.|+|++..+..
T Consensus 77 G~Y~C~a~n~~----g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~-~~g~p~~~v~W~k~~~~~~~ 151 (304)
T 2yd9_A 77 NVYECVAQNSV----GEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCA-ASGNPDPEITWFKDFLPVDP 151 (304)
T ss_dssp SEEEEEEECSS----CEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCE-EECSSCCEEEEEETTEECCG
T ss_pred eEEEEEEECCC----CeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEE-CccCCCCeEEEEECCEECcC
Confidence 99999999863 3356778899987532 24444 344667889999999999 67899999999999887754
Q ss_pred cee-EEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeE-EEEEEEEE-eCCceEEEecCcceeecCceE
Q psy17146 178 NVR-VTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKV-ARLKLLVK-YAPKVQVSVIGSNRLVEGTDV 254 (1011)
Q Consensus 178 ~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s-~~v~v~v~-~~P~~~~~~~~~~~v~~g~~v 254 (1011)
... .......+ +.|.|.+++.+|+|.|+|.|.|..|..... ..+.|.+. .+|.+... +
T Consensus 152 ~~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~-~----------- 212 (304)
T 2yd9_A 152 SASNGRIKQLRS-------GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSIL-P----------- 212 (304)
T ss_dssp GGGTTSEEECTT-------SCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEEC-C-----------
T ss_pred CCCcceEEeCCC-------eEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEec-C-----------
Confidence 321 11111222 279999999999999999999988755322 44444432 22222111 1
Q ss_pred EEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCcc
Q psy17146 255 RLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHM 334 (1011)
Q Consensus 255 ~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~ 334 (1011)
....+.+|+.++|.|.+.+.|.+
T Consensus 213 --------------------------------------------------------~~~~v~~G~~v~l~C~~~g~p~p- 235 (304)
T 2yd9_A 213 --------------------------------------------------------MSHEIMPGGNVNITCVAVGSPMP- 235 (304)
T ss_dssp --------------------------------------------------------CCBCCCTTCCEEEEEEEEEESCC-
T ss_pred --------------------------------------------------------CceEEcCCCeEEEEEEEeeeCCC-
Confidence 22456788888888888888876
Q ss_pred EEEEEECCeecCCCc----CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEe
Q psy17146 335 KYRWYINDQPVPAAA----SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFR 394 (1011)
Q Consensus 335 ~i~W~k~g~~l~~~~----~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~ 394 (1011)
.+.|+++|..+.... ....|.|.++ + |+|.|+|.|.|..|..+.++.|.|..++.+.
T Consensus 236 ~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~-d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~ 296 (304)
T 2yd9_A 236 YVKWMQGAEDLTPEDDMPVGRNVLELTDV--K-DSANYTCVAMSSLGVIEAVAQITVKSLPKAG 296 (304)
T ss_dssp EEEEEETTEECSCSSSCCBSEEEEEECSC--C-SCEEEEEEEEETTEEEEEEEEEC--------
T ss_pred EEEEEECCEECCCcccccCCcEEEEEccc--c-cCEEEEEEEEeCCCcEEEEEEEEEecCcccc
Confidence 899999998886542 2234666665 4 8999999999999999999999998877644
No 53
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=274.71 Aligned_cols=277 Identities=15% Similarity=0.262 Sum_probs=201.1
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEee-CCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTK-DDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k-~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+|.|.+.|.++.+.+|++|+|.|.+.+....+.|++ ++..+. ...|+.+..++ ...+|.|.+++.+|+|.
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~~v~W~~~~g~~~~------~~~~~~~~~~~--~~~~L~i~~~~~~D~G~ 74 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKII------STQRVVVQKEG--VRSRLTIYNANIEDAGI 74 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESCCSEEECBCTTCCBCC------CBTTEEEEEET--TEEEEEECSCCGGGCEE
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCCCCceEEECCCCcCcc------CCCcEEEecCC--CEEEEEEccCCcccCEE
Confidence 4688999999999999999999999998666999999 554432 33566665433 45689999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
|+|.+.+..+. ..+..+.|.|..++.. ........+.+|+.+.|.|. +.+.|.+.+.|++++..+.........
T Consensus 75 Y~C~~~n~~g~---~~~~~~~l~v~~~~~~--~~~~~~~~v~~G~~v~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~~~ 148 (291)
T 2wim_A 75 YRCQATDAKGQ---TQEATVVLEIYQKLTF--REVVSPQEFKQGEDAEVVCR-VSSSPAPAVSWLYHNEEVTTISDNRFA 148 (291)
T ss_dssp EEEEEECSSSC---EEEEEEEEEEECCCBC--CSCCCSEEEETTSCEEECCC-CBCSSCCEEEEECC----CBCCCSSEE
T ss_pred EEEEEecccCc---eEEEEEEEEecCCcce--EeCCCChhhcCCCCEEEEEE-EccCCCCEEEEEECCccccccCCceEE
Confidence 99999986432 2355677777765532 22334567889999999999 678999999999998877542111111
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCC
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANP 264 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~ 264 (1011)
...+ +.|.|.+++.+|+|.|+|.+.|..+.......+.+.+..+|.+......
T Consensus 149 ~~~~-------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~-------------------- 201 (291)
T 2wim_A 149 MLAN-------NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKS-------------------- 201 (291)
T ss_dssp ECTT-------SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSE--------------------
T ss_pred EccC-------CCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCccc--------------------
Confidence 1222 3699999999999999999999887665566777777777654321110
Q ss_pred CccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCee
Q psy17146 265 SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQP 344 (1011)
Q Consensus 265 ~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~ 344 (1011)
....+.+|+.+.|.|.+.+.|.+ .+.|+++|..
T Consensus 202 ----------------------------------------------~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~g~~ 234 (291)
T 2wim_A 202 ----------------------------------------------FNATAERGEEMTFSCRASGSPEP-AISWFRNGKL 234 (291)
T ss_dssp ----------------------------------------------EECCSSSCCEEEEECBCCCBSCC-EEEEEETTEE
T ss_pred ----------------------------------------------ccceecCCCeEEEEEEeecCCCC-eEEEEECCEE
Confidence 01245567777777777776665 6777777777
Q ss_pred cCCC------cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecc
Q psy17146 345 VPAA------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGP 391 (1011)
Q Consensus 345 l~~~------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P 391 (1011)
+... .....|.|.++..+ |+|.|+|.|.|..|..+.++.|.|..++
T Consensus 235 ~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 286 (291)
T 2wim_A 235 IEENEKYILKGSNTELTVRNIINS-DGGPYVCRATNKAGEDEKQAFLQVFVQH 286 (291)
T ss_dssp CCCTTTEEECSTTCEEEEESCCST-TCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred CcCCccEEEcCCccEEEEeeCCcc-cCEEEEEEEEECCCceeeeEEEEEEEec
Confidence 6543 23568999999998 9999999999999999999999998765
No 54
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.97 E-value=1.3e-29 Score=275.52 Aligned_cols=258 Identities=18% Similarity=0.223 Sum_probs=199.3
Q ss_pred ecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce--eeccCCcEEEEeeccCCCeEEEEEEEEcCCcceee
Q psy17146 389 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK--VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGA 466 (1011)
Q Consensus 389 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~--~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~ 466 (1011)
.+|.|...+.+..+.+|++++|.|.+.+ .+.|+|++... ....+..|.|.+++.+|+|.|+|.|.| + . +.
T Consensus 11 ~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n-g-~--~~ 82 (290)
T 2o26_X 11 SPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSN-G-L--TS 82 (290)
T ss_dssp -CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSCEEEECSSEEEETTCCGGGCEEEEEEESS-S-C--EE
T ss_pred CCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcceeeecCCCceEEEeccCHHhCeEEEEEeeC-C-c--cE
Confidence 4688888888999999999999999987 89999999766 334458899999999999999999986 1 1 33
Q ss_pred EEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecce
Q psy17146 467 EATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPR 546 (1011)
Q Consensus 467 ~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~ 546 (1011)
.+.| .|..+|.
T Consensus 83 ~~~l---------------------------------------------------------------------~V~~~~~ 93 (290)
T 2o26_X 83 SIYV---------------------------------------------------------------------FVRDPAK 93 (290)
T ss_dssp EEEE---------------------------------------------------------------------EEECSSC
T ss_pred EEEE---------------------------------------------------------------------EEeCCCc
Confidence 3333 4444454
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCC-CeEEEE-ecCCce------eecCCCcEEEeecCCCCCE-EEEEEEEecCCCc
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPA-PEITWI-HEDSDK------VVGNSPNLTLLMTSDDLAG-RYYCKASVMGFPE 617 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~-p~v~W~-k~~~~~------~~~~~~~L~I~~v~~~d~G-~Y~C~a~n~~~~~ 617 (1011)
+...+....+.+|+.+.|.|.+.+ |. +.+.|+ +++..+ .....+.|.|.++..+|+| .|+|.|.|.+...
T Consensus 94 ~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~ 172 (290)
T 2o26_X 94 LFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWL 172 (290)
T ss_dssp CBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEE
T ss_pred ccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceE
Confidence 445556778889999999999996 77 899995 565443 2344578999999999999 9999999953223
Q ss_pred eeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEe----cccCCCCeEEecCCcCcc
Q psy17146 618 VGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEI----GVGSSDDYSVLEDPLKEG 688 (1011)
Q Consensus 618 ~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l----~~~~~~~~~~~~~~~~~~ 688 (1011)
.+..+.|.|. .+|.|. .+....+.+|+.++|.|.+.|.|.|..++|+++|..+ ..... ..+... ....
T Consensus 173 ~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~--~~~~~~-~~~~ 249 (290)
T 2o26_X 173 HSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHN--SWHRGD-FNYE 249 (290)
T ss_dssp ECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECC--EEEEET-TEEE
T ss_pred EeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeeccc--ccccCc-eeeE
Confidence 4556777776 788886 4456689999999999999999999449999999874 32111 111110 0122
Q ss_pred ceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 689 ~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
..+.|.|.++..+|+|.|+|.|.|.+|..+..+.|.|.+
T Consensus 250 ~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 288 (290)
T 2o26_X 250 RQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE 288 (290)
T ss_dssp EEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred EEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence 357999999999999999999999999999999998854
No 55
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.96 E-value=4.8e-29 Score=274.29 Aligned_cols=255 Identities=17% Similarity=0.184 Sum_probs=194.6
Q ss_pred EeeCCCceEecCCCcEEEEeecCCCCCC-----ceEEEeCCCcee---------------------------eccCCcEE
Q psy17146 393 FRARPYSVQVDRGAGVNLLCDVDGNPAP-----EITWIHEDSDKV---------------------------VGNSPNLT 440 (1011)
Q Consensus 393 ~~~~p~~~~v~~G~~v~l~C~~~g~p~p-----~v~W~k~~~~~~---------------------------~~~~~~L~ 440 (1011)
+...|.++.+..|++++|.|.+.+.+.+ .+.|+|++.... .....+|.
T Consensus 3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~ 82 (313)
T 4fqp_A 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR 82 (313)
T ss_dssp EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence 3456778889999999999999877765 489999874310 01235699
Q ss_pred EEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccC
Q psy17146 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS 520 (1011)
Q Consensus 441 I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~ 520 (1011)
|.+++.+|+|.|+|.+.+...+..+..+.|.+.
T Consensus 83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~----------------------------------------------- 115 (313)
T 4fqp_A 83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL----------------------------------------------- 115 (313)
T ss_dssp ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCB-----------------------------------------------
T ss_pred ECcCChhhCEEEEEEEeeccCcceeeeeeeeec-----------------------------------------------
Confidence 999999999999999976544444444444433
Q ss_pred CCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEE-ecCCCCeEEEEecCCceeec------CC---
Q psy17146 521 SDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKVVG------NS--- 590 (1011)
Q Consensus 521 ~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~-~g~p~p~v~W~k~~~~~~~~------~~--- 590 (1011)
.+|.+...+....+..|+.+.+.|.+ .+.|.+.+.|++++..+... .+
T Consensus 116 ----------------------~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~ 173 (313)
T 4fqp_A 116 ----------------------AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTV 173 (313)
T ss_dssp ----------------------BCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCE
T ss_pred ----------------------cCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeeccccc
Confidence 33444444444556678888999987 47899999999998765321 11
Q ss_pred ---CcEEEeecCCCCCEEEEEEEEec-CCCceeeEEEEEEcCCCeee--cCCceeeecCCcEEEEEEEEecCCCCeEEEE
Q psy17146 591 ---PNLTLLMTSDDLAGRYYCKASVM-GFPEVGAEATVYLKGRPTII--SHRTQFGIPGDTARVECSAFSIPPPEKVTWS 664 (1011)
Q Consensus 591 ---~~L~I~~v~~~d~G~Y~C~a~n~-~~~~~s~~~~l~V~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~ 664 (1011)
..|.|..+..+|+|.|+|.|.|. +....+..+.|.|..+|.+. ......+..|+.++|.|.+.|.|.|..|+|+
T Consensus 174 ~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~ 253 (313)
T 4fqp_A 174 TVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWS 253 (313)
T ss_dssp EEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEE
T ss_pred ccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEE
Confidence 35889999999999999999994 34456677888888899875 3345567788999999999999999669999
Q ss_pred ECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 665 YRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 665 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
|+|.++... ... . .++|.|.++..+|+|.|+|.|.|.+|+.+.++.|.|.+.
T Consensus 254 ~~~~~l~~~----~~~-~-------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 305 (313)
T 4fqp_A 254 TTMGPLPPF----AVA-Q-------GAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEG 305 (313)
T ss_dssp ETTBSCCTT----EEE-E-------TTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred ECCEECCCc----eEE-e-------CCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeC
Confidence 999987521 111 1 258999999999999999999999999999999999643
No 56
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.96 E-value=1.5e-29 Score=294.08 Aligned_cols=350 Identities=17% Similarity=0.215 Sum_probs=222.7
Q ss_pred eCCcccccCCcEEEEEEeecCC-CccEEEEEEC--Cee---c------------C---CC---------cCccEEEEeec
Q psy17146 310 IGSNRLVEGTDVRLYCKAEANP-SHMKYRWYIN--DQP---V------------P---AA---------ASATELYLTNI 359 (1011)
Q Consensus 310 ~~~~~v~~g~~v~l~C~~~~~p-~~~~i~W~k~--g~~---l------------~---~~---------~~~~~L~I~~~ 359 (1011)
.....+.+|+.++|.|.+.+.+ ....+.|||+ |.. + . .. .....|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (457)
T 1hzh_H 7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL 86 (457)
T ss_dssp CCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCC
Confidence 4567889999999999999876 2348999984 221 1 0 00 11247999999
Q ss_pred ccccCCcEEEEEEEcCCc------------cceeeEEEEEEe----cceEeeCCCceEecCCCcEEEEeecCCC-CC-Cc
Q psy17146 360 TRHQHDSIVKCEVHNDVG------------KSEDSETLDVTY----GPRFRARPYSVQVDRGAGVNLLCDVDGN-PA-PE 421 (1011)
Q Consensus 360 ~~~~d~G~Y~C~a~n~~g------------~~~~s~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~~~g~-p~-p~ 421 (1011)
+.+ |+|.|+|.|.|..| .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |. +.
T Consensus 87 ~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~ 165 (457)
T 1hzh_H 87 RSA-DTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT 165 (457)
T ss_dssp CGG-GCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCE
T ss_pred Ccc-cCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeE
Confidence 998 99999999999876 223556788865 5665544434457899999999999887 64 79
Q ss_pred eEEEeCCCce-------eeccCC------cEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccC
Q psy17146 422 ITWIHEDSDK-------VVGNSP------NLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIP 488 (1011)
Q Consensus 422 v~W~k~~~~~-------~~~~~~------~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~ 488 (1011)
|.|+|++... .....+ .|.|.++..+| |.|+|.|.|.++.. .....+.+...+.
T Consensus 166 v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~-~~~~~v~~~~~~~----------- 232 (457)
T 1hzh_H 166 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT-KVDKKAEPKSCDK----------- 232 (457)
T ss_dssp EEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTE-EEEEECCCCCSCS-----------
T ss_pred EEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCc-ceeEEecccCCCc-----------
Confidence 9999998531 111222 58888899999 99999999954321 1122222211110
Q ss_pred CCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEeccee-ecCCceEE-EcCCCcEEEEE
Q psy17146 489 GDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF-RARPYSVQ-VDRGAGVNLLC 566 (1011)
Q Consensus 489 g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~-~~~p~~~~-v~~G~~~~l~C 566 (1011)
.+.|.+... + .+..+|.+ ...|.... +.+|+.++|.|
T Consensus 233 ----~~~~~~~~~--~-----------------------------------~~~~~p~v~~~~p~~~~~~~~G~~v~L~C 271 (457)
T 1hzh_H 233 ----THTCPPCPA--P-----------------------------------ELLGGPSVFLFPPKPKDTLMISRTPEVTC 271 (457)
T ss_dssp ----SCSCCSCCC--C-----------------------------------CCSSSCEEEEECCCHHHHHCTTSCCCEEE
T ss_pred ----ccccCCCCC--c-----------------------------------cccCCceEEeECcCchhhcccCCceEEEE
Confidence 000100000 0 01123333 33333322 67899999999
Q ss_pred EEecCCCC----eEEEEecCCcee--------ecCCCcEEEeec---CCCC---CEEEEEEEEecCCCceeeEEEE----
Q psy17146 567 DVDGNPAP----EITWIHEDSDKV--------VGNSPNLTLLMT---SDDL---AGRYYCKASVMGFPEVGAEATV---- 624 (1011)
Q Consensus 567 ~~~g~p~p----~v~W~k~~~~~~--------~~~~~~L~I~~v---~~~d---~G~Y~C~a~n~~~~~~s~~~~l---- 624 (1011)
.+.|.|++ .++|+|++..+. ...++.|.|..+ ...| +|.|+|.|.|.+. .......+
T Consensus 272 ~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~-~~~~~~~v~~~~ 350 (457)
T 1hzh_H 272 VVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL-PAPIEKTISKAK 350 (457)
T ss_dssp EEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTS-SSCEEEEECCCC
T ss_pred EEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCC-CCcceEEEEccc
Confidence 99998654 999999985532 234566666643 3455 9999999998432 22233233
Q ss_pred EEcCCCeeec--CCceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 625 YLKGRPTIIS--HRTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 625 ~V~~~P~i~~--~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
.+..+|.+.. +....+..|+ ++|.|.+.|.++ +..|+|+|||..+.......+....+ ......+.|.|.....+
T Consensus 351 ~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~-g~~~~~s~l~i~~~~~~ 428 (457)
T 1hzh_H 351 GQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD-GSFFLYSKLTVDKSRWQ 428 (457)
T ss_dssp CCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTT-SCEEEEEEEEEEHHHHH
T ss_pred CCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCC-CCEEEEEEEEEChHHcc
Confidence 3467787762 2333344555 999999999744 34899999999986321111111111 00012356777777778
Q ss_pred CCEEEEEEEEcCCCCe
Q psy17146 702 HFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 702 d~G~Y~C~a~N~~G~~ 717 (1011)
|.|.|+|.|.|.....
T Consensus 429 ~~g~YtC~a~n~~l~~ 444 (457)
T 1hzh_H 429 QGNVFSCSVMHEALHN 444 (457)
T ss_dssp TTCCEEEEEECTTSGG
T ss_pred CCCeEEEEEEECCCCC
Confidence 8999999999987543
No 57
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.96 E-value=3.8e-28 Score=283.54 Aligned_cols=350 Identities=17% Similarity=0.214 Sum_probs=227.9
Q ss_pred eCCcccccCCcEEEEEEeecCC-CccEEEEEECC--eecC------------------CC---------cCccEEEEeec
Q psy17146 310 IGSNRLVEGTDVRLYCKAEANP-SHMKYRWYIND--QPVP------------------AA---------ASATELYLTNI 359 (1011)
Q Consensus 310 ~~~~~v~~g~~v~l~C~~~~~p-~~~~i~W~k~g--~~l~------------------~~---------~~~~~L~I~~~ 359 (1011)
.....+.+|++++|.|.+.+.+ ....+.|||+. ..+. .. .....|.|.++
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 87 (475)
T 1iga_A 8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL 87 (475)
T ss_pred CCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCC
Confidence 3567889999999999998764 23489999852 2110 00 12247999999
Q ss_pred ccccCCcEEEEEEEcCCcc------ceeeEEEEEEe----cceEeeCCCceEecCCCcEEEEeecCCC-CC-C-ceEEEe
Q psy17146 360 TRHQHDSIVKCEVHNDVGK------SEDSETLDVTY----GPRFRARPYSVQVDRGAGVNLLCDVDGN-PA-P-EITWIH 426 (1011)
Q Consensus 360 ~~~~d~G~Y~C~a~n~~g~------~~~s~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~~~g~-p~-p-~v~W~k 426 (1011)
+.+ |+|.|+|.+.|..|. ....+.|.|.. +|.+...+. ..+.+|+.+.|.|.+.|. |. + .|.|++
T Consensus 88 ~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~ 165 (475)
T 1iga_A 88 RPE-DTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSL-CSTQPDGNVVIACLVQGFFPQEPLSVTWSE 165 (475)
T ss_pred Chh-hCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCc-cccCCCCeEEEEEEEeeecCCCceEEEEcC
Confidence 998 999999999998762 23456788874 455544332 223789999999999887 65 5 999999
Q ss_pred CCCcee-------e-ccC------CcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeE
Q psy17146 427 EDSDKV-------V-GNS------PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTA 492 (1011)
Q Consensus 427 ~~~~~~-------~-~~~------~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~ 492 (1011)
++.... . ... ..|.|..+..+|+|.|+|.|.|..+...+..+.+.|...+.. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~-------------~ 232 (475)
T 1iga_A 166 SGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPT-------------P 232 (475)
T ss_pred CCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCccc-------------c
Confidence 874311 1 111 236777778899999999999976543333444333211110 0
Q ss_pred EEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEeccee-ecCCceEEEcCCCcEEEEEEEecC
Q psy17146 493 RVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF-RARPYSVQVDRGAGVNLLCDVDGN 571 (1011)
Q Consensus 493 ~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~-~~~p~~~~v~~G~~~~l~C~~~g~ 571 (1011)
...|... . ...+ .+|.+ ...|....+.+|+.++|.|.+.|.
T Consensus 233 ~~~~~~~--------------------------------~-----~~~~-~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~ 274 (475)
T 1iga_A 233 SPSTPPT--------------------------------P-----SPSC-CHPRLSLHRPALEDLLLGSEANLTCTLTGL 274 (475)
T ss_pred ccccccc--------------------------------C-----CCCC-CCcEEEEcCCChHHhccCCceEEEEEEEcc
Confidence 0011000 0 0001 23333 334444446899999999999988
Q ss_pred CC---CeEEEEecCCcee--------ec------CCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEE---EcCCCe
Q psy17146 572 PA---PEITWIHEDSDKV--------VG------NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVY---LKGRPT 631 (1011)
Q Consensus 572 p~---p~v~W~k~~~~~~--------~~------~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~---V~~~P~ 631 (1011)
++ +.++| +++ ... .. ..+.|.|.++..+|+|.|+|.|.|. .+.......|. +..+|.
T Consensus 275 ~p~~~~~i~W-~~~-~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~-~~~~~~~~~v~~~~~~~~P~ 351 (475)
T 1iga_A 275 RDASGVTFTW-TPS-SGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYP-ESKTPLTATLSKSGNTFRPE 351 (475)
T ss_pred cCCCceEEEE-CCC-CcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcC-CCCCceEEEeecCCCCCCCe
Confidence 54 69999 433 221 01 1246999999999999999999993 44433444553 367787
Q ss_pred eec--CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCc---Ccc---ceeEEEEcCCCCCC
Q psy17146 632 IIS--HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPL---KEG---IKSTLIIRESRHDH 702 (1011)
Q Consensus 632 i~~--~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~---~~~---~~~~L~I~~~~~~d 702 (1011)
+.. +....+..|+.++|.|.+.|. |.+..|+|+|||+.+.... ......... .++ ..+.|.|.....+|
T Consensus 352 v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~--~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~ 429 (475)
T 1iga_A 352 VHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREK--YLTWASRQEPSQGTTTFAVTSILRVAAEDWKK 429 (475)
T ss_pred EEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCc--eeecccccccCCCCCcEEEEEEEEEChHHhcC
Confidence 753 233347789999999999997 4334899999999986421 111100000 122 34678898888889
Q ss_pred CEEEEEEEEcCCCCe
Q psy17146 703 FGVYNCSVSNPYGSD 717 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G~~ 717 (1011)
.|.|+|.|.|.....
T Consensus 430 ~g~YtC~a~n~~l~~ 444 (475)
T 1iga_A 430 GDTFSCMVGHEALPL 444 (475)
T ss_pred CCEEEEEEEcCCCCC
Confidence 999999999987653
No 58
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.96 E-value=2.8e-31 Score=306.51 Aligned_cols=343 Identities=14% Similarity=0.213 Sum_probs=224.9
Q ss_pred eeCCcccccCCcEEEEEEeecCC-CccEEEEEECC--eec----C--------------CC---------cCccEEEEee
Q psy17146 309 VIGSNRLVEGTDVRLYCKAEANP-SHMKYRWYIND--QPV----P--------------AA---------ASATELYLTN 358 (1011)
Q Consensus 309 ~~~~~~v~~g~~v~l~C~~~~~p-~~~~i~W~k~g--~~l----~--------------~~---------~~~~~L~I~~ 358 (1011)
......+.+|++++|.|.+.+.+ ....+.|||++ ..+ . .. .....|.|.+
T Consensus 5 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 84 (434)
T 1igy_B 5 ESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSS 84 (434)
T ss_dssp CCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECS
T ss_pred CCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECC
Confidence 34567899999999999999874 23489999863 221 0 00 1124799999
Q ss_pred cccccCCcEEEEEEEcCCccceeeEEEEEEe----cceEeeCCCceEecCCCcEEEEeecCCC-CCC-ceEEEeCCCcee
Q psy17146 359 ITRHQHDSIVKCEVHNDVGKSEDSETLDVTY----GPRFRARPYSVQVDRGAGVNLLCDVDGN-PAP-EITWIHEDSDKV 432 (1011)
Q Consensus 359 ~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~~~g~-p~p-~v~W~k~~~~~~ 432 (1011)
++.+ |+|.|+|.|.|..+.....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|+|++....
T Consensus 85 v~~~-D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~ 163 (434)
T 1igy_B 85 LTSD-DSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG 163 (434)
T ss_dssp BCGG-GCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSS
T ss_pred CChH-HCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCC
Confidence 9998 99999999998655555667888863 4554433323346899999999999886 776 999999986421
Q ss_pred -------ec-----cCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeee
Q psy17146 433 -------VG-----NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFS 500 (1011)
Q Consensus 433 -------~~-----~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~ 500 (1011)
.. ....|.|.++..+| |.|+|.|.|..+.. .....+.+..+ .|.+..
T Consensus 164 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~~~~~~~-------------------~~~v~~ 222 (434)
T 1igy_B 164 VHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASST-KVDKKIVPRDC-------------------GCKPCI 222 (434)
T ss_dssp EEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTC-CEEEECCCCCC-------------------CCCCCC
T ss_pred eEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCc-cceeeccCCCC-------------------CCcccc
Confidence 11 11347888888889 99999999864432 11111111100 010000
Q ss_pred CCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEeccee-ecCCceEE-EcCCCcEEEEEEEecCC----CC
Q psy17146 501 IPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF-RARPYSVQ-VDRGAGVNLLCDVDGNP----AP 574 (1011)
Q Consensus 501 ~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~-~~~p~~~~-v~~G~~~~l~C~~~g~p----~p 574 (1011)
.+.+ ..|.+ ...|.... +.+|+.++|.|.+.|.+ .+
T Consensus 223 ~~~~--------------------------------------~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~ 264 (434)
T 1igy_B 223 CTVP--------------------------------------EVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEV 264 (434)
T ss_dssp CCCS--------------------------------------SSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCC
T ss_pred CCCC--------------------------------------cCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCe
Confidence 0000 00222 22232222 78999999999999984 35
Q ss_pred eEEEEecCCceeec--------------CCCcEEEeecCCCCCEEEEEEEEecCCCc--eeeEEEE--EEcCCCeeec-C
Q psy17146 575 EITWIHEDSDKVVG--------------NSPNLTLLMTSDDLAGRYYCKASVMGFPE--VGAEATV--YLKGRPTIIS-H 635 (1011)
Q Consensus 575 ~v~W~k~~~~~~~~--------------~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~--~s~~~~l--~V~~~P~i~~-~ 635 (1011)
.+.|+|++..+... ..+.|.|.++..+|+|.|+|.|.|. .+. ....+.+ .+..+|.+.. +
T Consensus 265 ~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-~~~~~~~~~v~~~~~~~~~P~v~~~~ 343 (434)
T 1igy_B 265 QFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSA-AFPAPIEKTISKTKGKPRAPQVYTIP 343 (434)
T ss_dssp CBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCS-SCSSCCCCCCCCCCSCCBCCCCEEEC
T ss_pred EEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECC-CCCCceeEEEeccCCCCcCCEEEEEC
Confidence 89999998654211 1347999999999999999999993 332 2333333 4566787752 2
Q ss_pred CceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEE
Q psy17146 636 RTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVS 711 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~ 711 (1011)
.......|+.++|.|.+.|. |++..|+|+|||..+... ....... ..++ ..+.|.|.....+|.|.|+|.|.
T Consensus 344 ~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~--~~~~~~~--~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~ 419 (434)
T 1igy_B 344 PPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENY--KNTQPIM--DTDGSYFVYSKLNVQKSNWEAGNTFTCSVL 419 (434)
T ss_dssp CCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCC--EECCCCC--CSSSCEEEEEEEEEEHHHHHTTCCEEEEEE
T ss_pred CCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCc--eecccee--CCCCcEEEEEEEEECchhccCCCEEEEEEE
Confidence 22224467789999999996 544589999999988421 1111100 1122 24578888888889999999999
Q ss_pred cCCCC
Q psy17146 712 NPYGS 716 (1011)
Q Consensus 712 N~~G~ 716 (1011)
|....
T Consensus 420 n~~l~ 424 (434)
T 1igy_B 420 HEGLH 424 (434)
T ss_dssp ETTSG
T ss_pred cCCCC
Confidence 98764
No 59
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.96 E-value=1.3e-28 Score=267.40 Aligned_cols=259 Identities=17% Similarity=0.202 Sum_probs=200.3
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee----eccCCcEEEEeeccCCCeEEEEEEEEcCCccee
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVG 465 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s 465 (1011)
+|.+...+....+.+|+.++|.|.+.+ .+.|++++.... ......|.|.+++.+|+|.|+|.|.|..+. .+
T Consensus 4 ~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~ 78 (289)
T 3ejj_X 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMA-GS 78 (289)
T ss_dssp CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSEECCCSSCCEEEESSCCGGGCEEEEEECCC------C
T ss_pred CcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEEEeccCCccEEEEeeeccccCEEEEEEEeccCCc-ce
Confidence 566777778889999999999999987 499999875432 335678999999999999999999864222 23
Q ss_pred eEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecc
Q psy17146 466 AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGP 545 (1011)
Q Consensus 466 ~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P 545 (1011)
.. ..|.|..+|
T Consensus 79 ~~---------------------------------------------------------------------~~l~V~~~~ 89 (289)
T 3ejj_X 79 TT---------------------------------------------------------------------IHLYVKDPA 89 (289)
T ss_dssp EE---------------------------------------------------------------------EEEEECCSS
T ss_pred eE---------------------------------------------------------------------EEEEEeCCC
Confidence 33 344444444
Q ss_pred e-eecCCceEEEcCCCcEEEEEEEecCCCCe-EEEEecCCce-------eecCCCcEEEeecCCCCCEEEEEEEEecCCC
Q psy17146 546 R-FRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDK-------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFP 616 (1011)
Q Consensus 546 ~-~~~~p~~~~v~~G~~~~l~C~~~g~p~p~-v~W~k~~~~~-------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 616 (1011)
. +...+....+.+|+.+.|.|.+.+.+.+. +.|++.+... ....++.|.|.++..+|+|.|+|.|.|...+
T Consensus 90 ~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~ 169 (289)
T 3ejj_X 90 HSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRE 169 (289)
T ss_dssp CSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred cceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCc
Confidence 3 45556788899999999999999988775 9998754332 3345678999999999999999999965667
Q ss_pred ceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccCCCCeEEecCCcCccce
Q psy17146 617 EVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIK 690 (1011)
Q Consensus 617 ~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~ 690 (1011)
..+..+.|.|. .+|.|. .+....+.+|+.++|.|.+.+ .|.+ .+.|+++|..+.... ..... .......
T Consensus 170 ~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~~~~~--~~~~~--~~~~~~~ 244 (289)
T 3ejj_X 170 STSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGF-NVILKRGDTKLEIPL--NSDFQ--DNYYKKV 244 (289)
T ss_dssp EECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCC-EEEEEETTEECCCCE--EEEEC--SSSEEEE
T ss_pred cccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCce-EEEEEECCEEeeccC--Ccccc--cceEEee
Confidence 77888889997 678877 445666789999999999999 6788 999999999886321 11111 1112235
Q ss_pred eEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 691 STLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 691 ~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+.|.|.++..+|+|.|+|.|.|.+|.+++++.|.+.+
T Consensus 245 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~ 281 (289)
T 3ejj_X 245 RALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281 (289)
T ss_dssp EEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred EEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEe
Confidence 7999999999999999999999999999999998754
No 60
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.96 E-value=6.8e-30 Score=281.58 Aligned_cols=267 Identities=17% Similarity=0.252 Sum_probs=198.3
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCC-CCCceEEEeCCCceee-------ccCCcEEEEeeccCCCeEEEEEEEEcCC
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDKVV-------GNSPNLTLLMTSDDLAGRYYCKASVMGF 461 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~-p~p~v~W~k~~~~~~~-------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 461 (1011)
+|.|... .+..+.+|+.+.|.|.+.+. |.+.+.|+|++..+.. .....|.|.+++.+|+|.|+|.|.|..+
T Consensus 7 ~P~~~~~-~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 85 (317)
T 2y25_A 7 GPHFVEY-LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 85 (317)
T ss_dssp CCEEEEE-EEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSC
T ss_pred CCcEeee-eeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCC
Confidence 5667643 35889999999999999887 7899999999854331 2235799999999999999999998543
Q ss_pred cceeeEEEEEEcCCCeeec-cCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEE
Q psy17146 462 PEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLD 540 (1011)
Q Consensus 462 ~~~s~~~~v~v~~~p~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~ 540 (1011)
.....+.|.+..+|.+.. .....+..|+.+.+.|.
T Consensus 86 -~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~------------------------------------------- 121 (317)
T 2y25_A 86 -KDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQST------------------------------------------- 121 (317)
T ss_dssp -EEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEEC-------------------------------------------
T ss_pred -cEEEEEEEEEecCccccccCCceecccCCCeEEEee-------------------------------------------
Confidence 233334444333332221 12233445555555551
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEec-CCCCeEEEEecCCceeec---------CCCcEEEeecCCCCCEEEEEEE
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDG-NPAPEITWIHEDSDKVVG---------NSPNLTLLMTSDDLAGRYYCKA 610 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g-~p~p~v~W~k~~~~~~~~---------~~~~L~I~~v~~~d~G~Y~C~a 610 (1011)
.+.+.|.|.+.+ .|.+.+.|++++..+... ....|.|.++..+|+|.|+|.|
T Consensus 122 ------------------~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 183 (317)
T 2y25_A 122 ------------------AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMEL 183 (317)
T ss_dssp ------------------SSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEE
T ss_pred ------------------ccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEE
Confidence 233566666655 688999999998664321 1234999999999999999999
Q ss_pred EecCCCceeeEEEEEEcC--------------------CCeeec--CCceeeecCCcEEEEEEEEecCCCCeEEEEECCe
Q psy17146 611 SVMGFPEVGAEATVYLKG--------------------RPTIIS--HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGE 668 (1011)
Q Consensus 611 ~n~~~~~~s~~~~l~V~~--------------------~P~i~~--~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~ 668 (1011)
.| ..+.....+.|.|.. +|.+.. +....+..|+.++|.|.+.|.|.| .+.|+++|.
T Consensus 184 ~n-~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~ 261 (317)
T 2y25_A 184 FD-GKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP-EVSWLKNEK 261 (317)
T ss_dssp EC-SSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCC-EEEEEESSS
T ss_pred Ee-CCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCC-EEEEEECCE
Confidence 99 677777777777542 344442 345679999999999999999999 999999999
Q ss_pred EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.+. ...++.+... ++..+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 262 ~~~--~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 314 (317)
T 2y25_A 262 ALA--SDDHCNLKFE---AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314 (317)
T ss_dssp EEC--CCSSEEECCB---TTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eCC--CCCcEEEEEc---CCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEE
Confidence 997 4456666542 2446799999999999999999999999999999999885
No 61
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=261.97 Aligned_cols=247 Identities=19% Similarity=0.271 Sum_probs=195.0
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCCC-ceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEE
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEA 468 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~ 468 (1011)
.|.|...|.+..+.+|+.+.|.|.+.+.|.+ .+.|+|++..+ ......|.|.+++.+|+|.|+|.|.|.. .+..+
T Consensus 1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~---~s~~~ 76 (262)
T 3rjd_A 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTAT-QTSTPSYRITSASVNDSGEYRCQRGLSG---RSDPI 76 (262)
T ss_dssp CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEEC-SCCSSEEEESSCCGGGCEEEEEEESSSC---CCCCE
T ss_pred CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEe-eccCCeEEEecCCcccCeEEEEEEecCC---ccccE
Confidence 4778888889999999999999999999988 99999987554 3346789999999999999999997532 11223
Q ss_pred EEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceee
Q psy17146 469 TVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFR 548 (1011)
Q Consensus 469 ~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~ 548 (1011)
. |.|..++ +.
T Consensus 77 ~---------------------------------------------------------------------l~v~~~~-~~ 86 (262)
T 3rjd_A 77 Q---------------------------------------------------------------------LEIHRGW-LL 86 (262)
T ss_dssp E---------------------------------------------------------------------EEEECSS-EE
T ss_pred E---------------------------------------------------------------------EEEeccc-eE
Confidence 3 3333333 22
Q ss_pred cCCceEEEcCCCcEEEEEEE-ecCCCCeEEEEecCCceeec-CCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 549 ARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKVVG-NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~-~g~p~p~v~W~k~~~~~~~~-~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ..+.|.|.+++.+|+|.|+|.|.| ..+..+..+.|.|
T Consensus 87 ~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n-~~~~~~~~~~l~V 165 (262)
T 3rjd_A 87 LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMG-KHRYTSAGISVTV 165 (262)
T ss_dssp EEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEES-SSEEEEECEEEEE
T ss_pred ecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccCCCCeEEEEECChhhCEEEEEEEeC-CCCccccceEEEe
Confidence 23345567889999999999 78888999999999776544 368999999999999999999999 4577788888888
Q ss_pred cC---CCeeecCCceeeecCCcEEEEEEEEecCC-CC---eEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 627 KG---RPTIISHRTQFGIPGDTARVECSAFSIPP-PE---KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 627 ~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~-p~---~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
.. +|.+.......+.+|+.++|.|.+.+.|. |. .+.|+++|..+... ...+.|.|.++.
T Consensus 166 ~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~--------------~~~~~L~i~~v~ 231 (262)
T 3rjd_A 166 KELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR--------------NTSSEYQILTAR 231 (262)
T ss_dssp ECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE--------------ESCCEEEESSCC
T ss_pred ccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc--------------CCCceEEEEEec
Confidence 74 57777666677899999999999999986 41 37899999988631 123689999999
Q ss_pred CCCCEEEEEEEEcCCCCe---EEEEEEEe
Q psy17146 700 HDHFGVYNCSVSNPYGSD---SVEIMLKP 725 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~G~~---~~~~~l~V 725 (1011)
.+|+|.|+|.|.|..|+. +..+.|.|
T Consensus 232 ~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V 260 (262)
T 3rjd_A 232 REDSGLYWCEAATEDGNVLKRSPELELQV 260 (262)
T ss_dssp GGGCEEEEEEEEETTSSCEEECCCEEECE
T ss_pred hhhCeEEEEEEEcccCceEEecCCeEEEE
Confidence 999999999999999965 33445444
No 62
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.96 E-value=4.6e-28 Score=268.74 Aligned_cols=288 Identities=23% Similarity=0.363 Sum_probs=204.2
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCC-----CCeeEEeeCCeecC-----------CcccCCCCcceEEeecCCCcee
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKDDFALG-----------PHRNLSGFDRYAMIGSDEEGDY 90 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~~~~l~-----------~~~~~~~~~r~~i~~~~~~~~~ 90 (1011)
++.+...|.++.+.+|++|+|.|.+.+. ...+.|+|++.... ........+|+.+. +...+..
T Consensus 14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~ 92 (331)
T 3u83_A 14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFL-RPSFTDG 92 (331)
T ss_dssp -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEES-SCSSSBC
T ss_pred CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEec-ccCCCCc
Confidence 3445566788999999999999999874 22699999642110 00111233677776 2344567
Q ss_pred EEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCC---CcEEEEEEccCCCCCcEEE
Q psy17146 91 SLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTED---REIELECISANGKPPAEIT 167 (1011)
Q Consensus 91 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg---~~v~L~C~~~~g~P~~~i~ 167 (1011)
+|.|.+++.+|+|.|+|.+.+... +..+..+.|.|..+|..........+.+.+| +.+.|.|.+..+.|.+.++
T Consensus 93 ~L~I~~v~~~D~G~Y~C~~~~~~~---~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~ 169 (331)
T 3u83_A 93 TIRLSRLELEDEGVYICEFATFPT---GNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVS 169 (331)
T ss_dssp CEEECSCCGGGCEEEEEEEEEETT---EEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEE
T ss_pred eEEEcccCcccCcEEEEEEEecCC---CccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEE
Confidence 899999999999999999554322 3467778899998765444445567778888 7799999867899999999
Q ss_pred EEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcce
Q psy17146 168 WIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNR 247 (1011)
Q Consensus 168 W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~ 247 (1011)
|+|++....... ........+...+.|.|.++..+|+|.|+|.|.|..+.. +..+.|.|..+|.+.+...
T Consensus 170 W~~~~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~--~~~~~l~V~~~P~~~~~~~---- 239 (331)
T 3u83_A 170 WETRLKGEAEYQ----EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRF--KESLTLNVQYEPEVTIEGF---- 239 (331)
T ss_dssp EEESSCCEEEEE----EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEE--EEEEECCEEEEEEEEEECC----
T ss_pred EEcCCCCccccc----eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcc--eeeEEEEEecCCeEEEecC----
Confidence 999643332211 122233455666789999999999999999999997754 5667777777776543322
Q ss_pred eecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEe
Q psy17146 248 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKA 327 (1011)
Q Consensus 248 v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~ 327 (1011)
....+.+|+.++|.|.+
T Consensus 240 ---------------------------------------------------------------~~~~~~~g~~~~l~C~~ 256 (331)
T 3u83_A 240 ---------------------------------------------------------------DGNWYLQRMDVKLTCKA 256 (331)
T ss_dssp ---------------------------------------------------------------CSCCBTTCCCEEEEEEE
T ss_pred ---------------------------------------------------------------CCceEeCCCeEEEEEeC
Confidence 22346677778888888
Q ss_pred ecCCCccEEEEEECCeecCCC--cCccEEEEe-ecccccCCcEEEEEEEcCCccceeeEEEEEEecce
Q psy17146 328 EANPSHMKYRWYINDQPVPAA--ASATELYLT-NITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPR 392 (1011)
Q Consensus 328 ~~~p~~~~i~W~k~g~~l~~~--~~~~~L~I~-~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~ 392 (1011)
.+.|.+..+.|++++..+... .....|.|. ++..+ |+|.|+|.|.|..|..+.++.|.|...+.
T Consensus 257 ~g~p~p~~i~W~~~~~~~~~~~~~~~~~L~i~~~v~~~-d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 323 (331)
T 3u83_A 257 DANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYS-LAGTYICEATNPIGTRSGQVEVNITEAAA 323 (331)
T ss_dssp EEESCCCEEEEEETTBSCCTTEEEETTEEEECSCCCGG-GCEEEEEEEEETTEEEEEEEEECCBC---
T ss_pred cCCCCCCEEEEEECCCcccccceecCcEEEEeCCCccc-cCeEEEEEEEeccccceEEEEEEEeccch
Confidence 777776348888888877553 245689999 89988 99999999999999999999999887554
No 63
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.96 E-value=7.7e-29 Score=277.27 Aligned_cols=264 Identities=16% Similarity=0.201 Sum_probs=165.9
Q ss_pred CCceEecCCCcEEEEeecCCCCC-----------CceEEEeCCCc--------------eeeccCCcEEEEeeccCCCeE
Q psy17146 397 PYSVQVDRGAGVNLLCDVDGNPA-----------PEITWIHEDSD--------------KVVGNSPNLTLLMTSDDLAGR 451 (1011)
Q Consensus 397 p~~~~v~~G~~v~l~C~~~g~p~-----------p~v~W~k~~~~--------------~~~~~~~~L~I~~v~~~d~G~ 451 (1011)
..++.+.+|+.+.|.|.+.+.|. +.+.|+|++.. +.......|.|.+++.+|+|.
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 93 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN 93 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence 46778999999999999998775 89999999842 112346679999999999999
Q ss_pred EEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCC
Q psy17146 452 YYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVG 531 (1011)
Q Consensus 452 Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G 531 (1011)
|+|.|.|..+ .....+.|.|..++...
T Consensus 94 Y~C~a~n~~~-~~~~~~~l~V~~~~~~~---------------------------------------------------- 120 (349)
T 4dep_C 94 YTCMLRNTTY-CSKVAFPLEVVQKDSCF---------------------------------------------------- 120 (349)
T ss_dssp EEEEEECSSC-EEEEEEEEEEECCCTTS----------------------------------------------------
T ss_pred EEEEEecCCc-eEEEEEEEEEecCCccc----------------------------------------------------
Confidence 9999997422 22233334333222100
Q ss_pred CCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEE-----ecCCCCeEEEEecCCcee-----ecCCCcEEEeecCCC
Q psy17146 532 KSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-----DGNPAPEITWIHEDSDKV-----VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 532 ~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~-----~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~ 601 (1011)
+.....+....+.+|+.+.|.|.+ .|.|.+.+.|+|++..+. ..++..|.|.++..+
T Consensus 121 -------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~~~~~L~i~~v~~~ 187 (349)
T 4dep_C 121 -------------NSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALIS 187 (349)
T ss_dssp -------------CCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEEETTEEEEESCCGG
T ss_pred -------------CcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceeecCCEEEEeeeeec
Confidence 011123446678999999999985 888999999999986442 233467999999999
Q ss_pred CCEEEEEEEEecCCCc---eeeEEEEEEcC------CCeeecCCce---eeecCCcEEEEEEEE----ecCCCCeEEEEE
Q psy17146 602 LAGRYYCKASVMGFPE---VGAEATVYLKG------RPTIISHRTQ---FGIPGDTARVECSAF----SIPPPEKVTWSY 665 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~~~---~s~~~~l~V~~------~P~i~~~~~~---~v~~G~~v~L~C~~~----g~p~p~~v~W~~ 665 (1011)
|+|.|+|.|.|...+. .+..+.|.|.. +|.|..+... .+..|+.++|.|.+. |.|.| .+.|++
T Consensus 188 d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p-~v~W~~ 266 (349)
T 4dep_C 188 NNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRN-EVWWTI 266 (349)
T ss_dssp GCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCC-EEEEES
T ss_pred CCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCC-EEEEEE
Confidence 9999999999943244 36777888866 6888755432 788999999999999 46888 999999
Q ss_pred CCeEecccCCCCeEEec-----CCcCccceeEEEEcCCCCCCC-EEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 666 RGEEIGVGSSDDYSVLE-----DPLKEGIKSTLIIRESRHDHF-GVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 666 ~g~~l~~~~~~~~~~~~-----~~~~~~~~~~L~I~~~~~~d~-G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
+|..+... ..++.+.. ........+.|.|.++..+|+ |.|+|.|.|.+|..+..+.|.|...
T Consensus 267 ~g~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~~ 334 (349)
T 4dep_C 267 DGKKPDDI-TIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVP 334 (349)
T ss_dssp SCC---------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC------
T ss_pred CCEEcccc-CCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeecC
Confidence 99988741 12222211 000011246699999999999 9999999999999999999998653
No 64
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.96 E-value=7.6e-27 Score=274.19 Aligned_cols=394 Identities=15% Similarity=0.191 Sum_probs=233.6
Q ss_pred cCCceeEEecCcEEEEEEEcCC---C--CeeEEeeCC--eecC----Ccc------cCCCCcceEEeecCCCceeEEEEe
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---T--GVLQWTKDD--FALG----PHR------NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~--~~v~W~k~~--~~l~----~~~------~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.|..+.+.+|++|+|.|.+.+. . ..+.|+|+. ..+. ... .-...+|+.+..+...+.++|+|.
T Consensus 6 qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (512)
T 1zvo_C 6 ESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLR 85 (512)
T ss_pred CCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEEC
Confidence 4778999999999999999862 2 579999863 2110 000 001236888887666678999999
Q ss_pred ecccCCCceEEEEEEeCCC---------CCcceeeeEEEEEEEcC-CCCCeeecC-C-eeeecCCCcEEEEEEccCCCCC
Q psy17146 96 PVMLDDDARYQCQVSTGIL---------GEPAIRSRFATLTVLVP-PDPPRIVQG-D-TLYTTEDREIELECISANGKPP 163 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~---------~~~~~~s~~~~l~V~~~-p~~~~i~~~-~-~~~v~eg~~v~L~C~~~~g~P~ 163 (1011)
+++.+|+|.|+|.+.+... .........+.|+|... +.+|.+... + .....+|+.+.|.|.+.+..|.
T Consensus 86 ~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~ 165 (512)
T 1zvo_C 86 SMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPT 165 (512)
T ss_pred cCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecC
Confidence 9999999999999987531 00111234467888743 345555421 1 1101246899999996555587
Q ss_pred c-EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEE---------EEEEEEE
Q psy17146 164 A-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVA---------RLKLLVK 233 (1011)
Q Consensus 164 ~-~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~---------~v~v~v~ 233 (1011)
+ +++|++++.... .............+...+.|.|.....+ .|.|+|.|.|..+...... .+.|.+.
T Consensus 166 p~~v~W~~~~~~~~--~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~ 242 (512)
T 1zvo_C 166 SVTVTWYMGTQSQP--QRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPT 242 (512)
T ss_pred ceEEEEEcCcccCc--eEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEe
Confidence 5 999999654321 1100001111224555678999988777 9999999999988764333 1223333
Q ss_pred eCCceEEEe---c-CcceeecC-----------ce--------EEEEEEcccCCCccEEEEEeCCcccCCccccceEEEE
Q psy17146 234 YAPKVQVSV---I-GSNRLVEG-----------TD--------VRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLT 290 (1011)
Q Consensus 234 ~~P~~~~~~---~-~~~~v~~g-----------~~--------v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~ 290 (1011)
.+|...-.. . .......| .. ..-.|.....+ +.+.
T Consensus 243 ~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~--p~v~-------------------- 300 (512)
T 1zvo_C 243 AQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQP--LGVY-------------------- 300 (512)
T ss_pred CCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCC--CEEE--------------------
Confidence 333210000 0 00000000 00 00011000001 1111
Q ss_pred eeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecC-CCccEEEEEECCeecCCC---------cC-----ccEEE
Q psy17146 291 NITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEAN-PSHMKYRWYINDQPVPAA---------AS-----ATELY 355 (1011)
Q Consensus 291 ~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~~~~i~W~k~g~~l~~~---------~~-----~~~L~ 355 (1011)
+.......+.+|+.++|.|.+.+. |..+.++|+|+|..+... .+ ...|.
T Consensus 301 ----------------~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~ 364 (512)
T 1zvo_C 301 ----------------LLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLT 364 (512)
T ss_pred ----------------EECCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEE
Confidence 000122346789999999999886 445699999999876521 01 13588
Q ss_pred EeecccccCCcEEEEEEEcCCccceeeEEEEE------EecceEeeCCCceEecCCCcEE-EEeecCCCCCC--ceEEEe
Q psy17146 356 LTNITRHQHDSIVKCEVHNDVGKSEDSETLDV------TYGPRFRARPYSVQVDRGAGVN-LLCDVDGNPAP--EITWIH 426 (1011)
Q Consensus 356 I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V------~~~P~~~~~p~~~~v~~G~~v~-l~C~~~g~p~p--~v~W~k 426 (1011)
|...... |.|.|+|.|.|..+... ...+.. ..+|.+...+... +|+.+. |.|.+.|++++ .+.|+|
T Consensus 365 i~~~~~~-d~g~y~C~a~n~~~~~~-~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k 439 (512)
T 1zvo_C 365 LPRSLWN-AGTSVTCTLNHPSLPPQ-RLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLE 439 (512)
T ss_pred EchHHhc-CCCeEEEEEEeCCCCCC-ceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEE
Confidence 8877776 89999999999887653 222322 2356655443322 799999 99999986544 689999
Q ss_pred CCCceee----------ccCC-------cEEEEeeccCCCeEEEEEEEEcCCc-ceeeEEEEEE
Q psy17146 427 EDSDKVV----------GNSP-------NLTLLMTSDDLAGRYYCKASVMGFP-EVGAEATVYL 472 (1011)
Q Consensus 427 ~~~~~~~----------~~~~-------~L~I~~v~~~d~G~Y~C~a~n~~~~-~~s~~~~v~v 472 (1011)
+|..+.. ...+ .|.|.....+|.|.|+|.|.|.+.. .......+.+
T Consensus 440 ~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v 503 (512)
T 1zvo_C 440 DQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEV 503 (512)
T ss_pred CCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEe
Confidence 9854321 1122 2334444455699999999996543 3334444444
No 65
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.96 E-value=8.8e-29 Score=271.49 Aligned_cols=252 Identities=20% Similarity=0.270 Sum_probs=189.8
Q ss_pred ceEecCCCcEEEEeecCCC-CCCceEEEeCCCcee---------------------------eccCCcEEEEeeccCCCe
Q psy17146 399 SVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDKV---------------------------VGNSPNLTLLMTSDDLAG 450 (1011)
Q Consensus 399 ~~~v~~G~~v~l~C~~~g~-p~p~v~W~k~~~~~~---------------------------~~~~~~L~I~~v~~~d~G 450 (1011)
++++.+|++++|.|.+.+. |.+.++|+|++.... ......|.|.+++.+|+|
T Consensus 8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 87 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG 87 (308)
T ss_dssp SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence 5688999999999998654 445799999753211 012357999999999999
Q ss_pred EEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCC
Q psy17146 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDV 530 (1011)
Q Consensus 451 ~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~ 530 (1011)
.|+|.|.|...+..+..+.+.+..+|.+.
T Consensus 88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~--------------------------------------------------- 116 (308)
T 4fom_A 88 KYICKAVTFPLGNAQSSTTVTVLVEPTVS--------------------------------------------------- 116 (308)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEEBCCEEE---------------------------------------------------
T ss_pred EEEEEEeeCCCcceeeeeEEEeeeccccc---------------------------------------------------
Confidence 99999998766655555555554333221
Q ss_pred CCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEE-ecCCCCeEEEEecCCceeec----------CCCcEEEeecC
Q psy17146 531 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKVVG----------NSPNLTLLMTS 599 (1011)
Q Consensus 531 G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~-~g~p~p~v~W~k~~~~~~~~----------~~~~L~I~~v~ 599 (1011)
+...+.......|+.+.|.|.+ .|.|.+.++|+|++..+... ..+.|.|..+.
T Consensus 117 ----------------~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~ 180 (308)
T 4fom_A 117 ----------------LIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTR 180 (308)
T ss_dssp ----------------EEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCG
T ss_pred ----------------cccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeecccccccceEEeee
Confidence 1222334445567888899875 68899999999998665321 12469999999
Q ss_pred CCCCEEEEEEEEec-CCCceeeEEEEEEcCCCeeec--CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCC
Q psy17146 600 DDLAGRYYCKASVM-GFPEVGAEATVYLKGRPTIIS--HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD 676 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~-~~~~~s~~~~l~V~~~P~i~~--~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~ 676 (1011)
.+|+|.|+|.|.|. +....+..+.|.|..+|.+.. .....+..|+.++|.|.+.|.|.|..+.|+|+|..+...
T Consensus 181 ~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~--- 257 (308)
T 4fom_A 181 FARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDG--- 257 (308)
T ss_dssp GGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSS---
T ss_pred ecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCc---
Confidence 99999999999994 345566778888888998763 344567789999999999999998569999999887531
Q ss_pred CeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 677 DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 677 ~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
... .....|.|.+++.+|+|.|+|.|+|.+|..+.++.|.|.++
T Consensus 258 -~~~-------~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~ 301 (308)
T 4fom_A 258 -LLA-------SDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDP 301 (308)
T ss_dssp -CBC-------STTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECC
T ss_pred -EEE-------cCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcC
Confidence 111 11357788999999999999999999999999999988643
No 66
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.96 E-value=3.3e-29 Score=278.38 Aligned_cols=282 Identities=19% Similarity=0.324 Sum_probs=143.3
Q ss_pred CCCceEecCCCcEEEEeecCCC-CCCceEEEeCCCcee-----eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEE
Q psy17146 396 RPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDKV-----VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 469 (1011)
Q Consensus 396 ~p~~~~v~~G~~v~l~C~~~g~-p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 469 (1011)
.+.+..+.+|+.+.|.|.+.+. |.+.+.|+|++..+. ......|.|.+++.+|+|.|+|.|.|. +..+..+.
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~--~~~~~~~~ 91 (334)
T 1ry7_B 14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT--QRVLCHFS 91 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC--CeEEEEEE
Confidence 3778889999999999999887 678999999986543 224578999999999999999999987 44555666
Q ss_pred EEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeec
Q psy17146 470 VYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRA 549 (1011)
Q Consensus 470 v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~ 549 (1011)
|.|...+......... .+..+ ......+|.|..
T Consensus 92 l~V~~~~~~~~~~~~~--------------------------------------------~~~~~---~~~~~~~p~~~~ 124 (334)
T 1ry7_B 92 VRVTDAPSSGDDEDGE--------------------------------------------DEAED---TGVDTGAPYWTR 124 (334)
T ss_dssp --------------------------------------------------------------------------CCCCSC
T ss_pred EEEeccCccccccccc--------------------------------------------ccccc---ccccCCCCEEec
Confidence 6665444321110000 00000 011123455543
Q ss_pred C----CceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee----------cCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 550 R----PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------GNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 550 ~----p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~----------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
. +....+.+|+.++|.|.+.|.|.+.+.|+|++..+.. ....+|.|.++..+|+|.|+|.|.| ..
T Consensus 125 p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n-~~ 203 (334)
T 1ry7_B 125 PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN-KF 203 (334)
T ss_dssp CTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEE-TT
T ss_pred cccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEe-CC
Confidence 3 2357889999999999999999999999999865432 2346899999999999999999999 56
Q ss_pred CceeeEEEEEEcC----CCeee--cCCceeeecCCcEEEEEEEEecCCCCeEEEEE----CCeEecccCCCCeEEecCC-
Q psy17146 616 PEVGAEATVYLKG----RPTII--SHRTQFGIPGDTARVECSAFSIPPPEKVTWSY----RGEEIGVGSSDDYSVLEDP- 684 (1011)
Q Consensus 616 ~~~s~~~~l~V~~----~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~----~g~~l~~~~~~~~~~~~~~- 684 (1011)
+..+..+.|.|.. +|.+. .+....+..|+.++|.|.+.|.|.| .+.|+| ||..+.......+.+....
T Consensus 204 g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~ 282 (334)
T 1ry7_B 204 GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282 (334)
T ss_dssp EEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCE-EEEEEECCCGGGCSBCTTSSBCCCCCCCSS
T ss_pred CCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCC-eEEEEECCcCCCccccCCCCeeEEEeecCc
Confidence 7788888888875 34554 2456779999999999999999999 999999 7877764332222222211
Q ss_pred --cCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 685 --LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 685 --~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
...+..+.|.|.++..+|+|.|+|.|.|.+|..+.++.|.|.+.
T Consensus 283 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 328 (334)
T 1ry7_B 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328 (334)
T ss_dssp CSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECS
T ss_pred cccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEEC
Confidence 00122358999999999999999999999999999999998654
No 67
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.96 E-value=1.3e-27 Score=255.41 Aligned_cols=253 Identities=19% Similarity=0.270 Sum_probs=184.5
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCC-eeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTG-VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~-~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
|.|.+.|.++.+.+|++++|.|.+.+ +.+ .+.|+|++..+... ..+|.|.+++.+|+|.|
T Consensus 2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~------------------~~~l~i~~~~~~d~G~Y 63 (262)
T 3rjd_A 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS------------------TPSYRITSASVNDSGEY 63 (262)
T ss_dssp CEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC------------------SSEEEESSCCGGGCEEE
T ss_pred CeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc------------------CCeEEEecCCcccCeEE
Confidence 67899999999999999999999987 444 89999999776321 23699999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEee
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEA 185 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~ 185 (1011)
+|.+.+.. .+..+.|.|..++ .+.......+.+|+.+.|.|.+..+.|.+.+.|+|++..+....
T Consensus 64 ~C~~~~~~------~s~~~~l~v~~~~---~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~------ 128 (262)
T 3rjd_A 64 RCQRGLSG------RSDPIQLEIHRGW---LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH------ 128 (262)
T ss_dssp EEEESSSC------CCCCEEEEEECSS---EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEE------
T ss_pred EEEEecCC------ccccEEEEEeccc---eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccC------
Confidence 99998642 3445778887543 44444556778999999999955888999999999887763321
Q ss_pred ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeC-CceEEEecCcceeecCceEEEEEEcccCC
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYA-PKVQVSVIGSNRLVEGTDVRLYCKAEANP 264 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~-P~~~~~~~~~~~v~~g~~v~L~C~~~~~~ 264 (1011)
....|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|... +...+.......+.+|+.+.|.|.+.+.+
T Consensus 129 --------~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~--~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p 198 (262)
T 3rjd_A 129 --------WNSNLTILKTNISHNGTYHCSGMGKHRYT--SAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLL 198 (262)
T ss_dssp --------ECCCEEESSCCGGGCEEEEEEEESSSEEE--EECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCC
T ss_pred --------CCCeEEEEECChhhCEEEEEEEeCCCCcc--ccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCC
Confidence 12479999999999999999999987543 55566666653 22223333333344555555555554443
Q ss_pred CccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEECCee
Q psy17146 265 SHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQP 344 (1011)
Q Consensus 265 ~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~ 344 (1011)
..+.+. +.+.|++++..
T Consensus 199 ~~p~~~---------------------------------------------------------------~~~~w~~~~~~ 215 (262)
T 3rjd_A 199 QRPGLQ---------------------------------------------------------------LYFSFYMGSKT 215 (262)
T ss_dssp C--------------------------------------------------------------------EEEEEEETTEE
T ss_pred CCCCcc---------------------------------------------------------------EEEEEEeCCcE
Confidence 211222 25789999988
Q ss_pred cCCCcCccEEEEeecccccCCcEEEEEEEcCCccc---eeeEEEEE
Q psy17146 345 VPAAASATELYLTNITRHQHDSIVKCEVHNDVGKS---EDSETLDV 387 (1011)
Q Consensus 345 l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~---~~s~~l~V 387 (1011)
+........|.|.++..+ |+|.|+|.|.|..|.. +..+.|.|
T Consensus 216 ~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~n~~G~~~~~s~~~~l~V 260 (262)
T 3rjd_A 216 LRGRNTSSEYQILTARRE-DSGLYWCEAATEDGNVLKRSPELELQV 260 (262)
T ss_dssp EEEEESCCEEEESSCCGG-GCEEEEEEEEETTSSCEEECCCEEECE
T ss_pred ecccCCCceEEEEEechh-hCeEEEEEEEcccCceEEecCCeEEEE
Confidence 876667789999999998 9999999999999975 23444444
No 68
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.96 E-value=4.6e-28 Score=263.27 Aligned_cols=244 Identities=14% Similarity=0.172 Sum_probs=193.3
Q ss_pred CCcccccCCcEEEEEEeecCCCccEEEEEECCeecCC-CcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEe
Q psy17146 311 GSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPA-AASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTY 389 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~-~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~ 389 (1011)
.+..+.+|+.++|.|.+.+ .+.|+|++..+.. ...+..|.|.+++.+ |+|.|+|.|.| |. +.++.|.|..
T Consensus 20 ~~~~v~~G~~v~l~C~~~~-----~i~W~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~~~n--g~-~~~~~l~V~~ 90 (290)
T 2o26_X 20 SELIVEAGDTLSLTCIDPD-----FVRWTFKTYFNEMVENKKNEWIQEKAEAT-RTGTYTCSNSN--GL-TSSIYVFVRD 90 (290)
T ss_dssp SEEEEETTSCEEEEEECTT-----EEEEEEECSSSCEEEECSSEEEETTCCGG-GCEEEEEEESS--SC-EEEEEEEEEC
T ss_pred CeEEEcCCCcEEEEECCCC-----cEEEecCCcceeeecCCCceEEEeccCHH-hCeEEEEEeeC--Cc-cEEEEEEEeC
Confidence 3456899999999999987 8999999987711 133489999999998 99999999999 54 7888999998
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCC-CceEEE-eCCCce------eeccCCcEEEEeeccCCCe-EEEEEEEEcC
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPA-PEITWI-HEDSDK------VVGNSPNLTLLMTSDDLAG-RYYCKASVMG 460 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~-p~v~W~-k~~~~~------~~~~~~~L~I~~v~~~d~G-~Y~C~a~n~~ 460 (1011)
+|.+...+....+.+|+.+.|.|.+.+ |. +.+.|+ +++..+ .......|.|.+++.+|+| .|+|.|.|.+
T Consensus 91 ~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~ 169 (290)
T 2o26_X 91 PAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDG 169 (290)
T ss_dssp SSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETT
T ss_pred CCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECC
Confidence 887667777888999999999999995 77 899995 555432 2344578999999999999 9999999864
Q ss_pred CcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEE
Q psy17146 461 FPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLD 540 (1011)
Q Consensus 461 ~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~ 540 (1011)
+...+..+.|.|...
T Consensus 170 ~~~~s~~~~l~V~~~----------------------------------------------------------------- 184 (290)
T 2o26_X 170 TWLHSDKFTLKVREA----------------------------------------------------------------- 184 (290)
T ss_dssp EEEECCCEEEEEECC-----------------------------------------------------------------
T ss_pred ceEEeEEEEEEEEeC-----------------------------------------------------------------
Confidence 433333444443210
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEecCCCCe-EEEEecCCce----------------eecCCCcEEEeecCCCCC
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDK----------------VVGNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~-v~W~k~~~~~----------------~~~~~~~L~I~~v~~~d~ 603 (1011)
+..+|.+...+....+.+|+.++|.|.+.|.|.|. +.|+|++... .....+.|.|.++..+|+
T Consensus 185 ~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~ 264 (290)
T 2o26_X 185 IKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDS 264 (290)
T ss_dssp CCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSC
T ss_pred CCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccC
Confidence 11466777777777889999999999999999996 9999999773 123356899999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcCCC
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~~P 630 (1011)
|.|+|.|.| ..|..+..+.|.|.++|
T Consensus 265 G~Y~C~a~N-~~g~~~~~~~l~V~~~P 290 (290)
T 2o26_X 265 GVFMCYANN-TFGSANVTTTLKVVEKG 290 (290)
T ss_dssp EEEEEEEEC-SSCEEEEEEEECC----
T ss_pred eEEEEEEeC-CCCcEEEEEEEEEEeCC
Confidence 999999999 67888999999998776
No 69
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.96 E-value=5.7e-28 Score=264.59 Aligned_cols=251 Identities=20% Similarity=0.292 Sum_probs=205.4
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec---------CC--CcEEEeecCCCCCEEEEEEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG---------NS--PNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~---------~~--~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
.+|.|...|.++.+.+|+.++|.|.+.|.|.+.+.|+|++..+... .+ ..|.|.+++.+|+|.|+|.|.
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 82 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence 4789999999999999999999999999999999999998544321 12 389999999999999999999
Q ss_pred ecCCCceeeEEEEEEcCCCeeecC------CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc
Q psy17146 612 VMGFPEVGAEATVYLKGRPTIISH------RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~~~P~i~~~------~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
| ..+..+..+.|.|..+|.+..+ ....+..|+.+.|.|.+.|.|.| .+.|++++..+. ...++.+..
T Consensus 83 n-~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~--~~~~~~~~~--- 155 (305)
T 2nzi_A 83 N-QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP-VITWQKGQDLID--NNGHYQVIV--- 155 (305)
T ss_dssp E-TTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCC-EEEEEESSSBCC--SSSSCEEEE---
T ss_pred c-CCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCC-EEEEEECCEECC--CCCcEEEEE---
Confidence 9 5677888999999988887533 45678899999999999999999 999999999887 345565543
Q ss_pred CccceeEEEEcC-CCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCC
Q psy17146 686 KEGIKSTLIIRE-SRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPP 764 (1011)
Q Consensus 686 ~~~~~~~L~I~~-~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p 764 (1011)
.+....|.|.+ +..+|.|.|+|.|.|..|..+..+.|.|. ..+.+|
T Consensus 156 -~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~--------------------------------~~P~~p 202 (305)
T 2nzi_A 156 -TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA--------------------------------DVPDPP 202 (305)
T ss_dssp -CSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEE--------------------------------BCCCCC
T ss_pred -cCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEe--------------------------------cCCCCC
Confidence 23357899999 99999999999999999999999999873 344578
Q ss_pred CCCcccccccccccccc--cCCCCCCCCcCcceeeecCcc-------------------cccccccc---c---CCCCCC
Q psy17146 765 GNGIEHHVTADGEKNQC--KESDNSSNISDIKLEFRTGSS-------------------VSNVHLDY---A---GHDSET 817 (1011)
Q Consensus 765 ~~~~~~~~~~~s~~~~W--~~~d~~s~I~~Y~ve~~~~~~-------------------~p~~~Y~f---A---~G~g~~ 817 (1011)
.++.+..+..+++.++| |..+++++|..|.++++.... .|...|.| | +|.|++
T Consensus 203 ~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~ 282 (305)
T 2nzi_A 203 RGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKP 282 (305)
T ss_dssp EEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEESSSEEEECSCCSSCEEEEEEEEEETTEECCC
T ss_pred CCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECccccCceEEecCCCCCCeEEEEEEEEeCCcccCC
Confidence 88888888999999999 567888999999999887543 67778999 5 899999
Q ss_pred C--ccccccccccccccc
Q psy17146 818 G--SESVHTRIGVPLAGP 833 (1011)
Q Consensus 818 s--s~~~~t~~~~P~~~P 833 (1011)
| +..+.|+++.|....
T Consensus 283 S~~~~~~~t~~~~p~~~~ 300 (305)
T 2nzi_A 283 SEPSEPTITKEDKTRAMN 300 (305)
T ss_dssp CCCCCCEECCC-------
T ss_pred cCCCCCEEcCCccccccc
Confidence 8 556777777776544
No 70
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.96 E-value=2.1e-28 Score=269.45 Aligned_cols=259 Identities=19% Similarity=0.294 Sum_probs=192.6
Q ss_pred CceEecCCCcEEEEeecCCCC-CCceEEEeCCCc---------eeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeE
Q psy17146 398 YSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSD---------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 467 (1011)
Q Consensus 398 ~~~~v~~G~~v~l~C~~~g~p-~p~v~W~k~~~~---------~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 467 (1011)
..+.+.+|+.+.|.|.+.+.| .+.+.|+|++.. +.......|.|.+++.+|+|.|+|.|.|..+ .....
T Consensus 13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g-~~~~~ 91 (315)
T 1itb_B 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY-CLRIK 91 (315)
T ss_dssp CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSC-CCCEE
T ss_pred eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCce-EEEEE
Confidence 356789999999999999888 789999999853 2233456899999999999999999996422 11111
Q ss_pred EEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEeccee
Q psy17146 468 ATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF 547 (1011)
Q Consensus 468 ~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~ 547 (1011)
+.+.+ +..+|.+
T Consensus 92 ~~v~v--------------------------------------------------------------------~~~~p~~ 103 (315)
T 1itb_B 92 ISAKF--------------------------------------------------------------------VENEPNL 103 (315)
T ss_dssp CCCEE--------------------------------------------------------------------ECCCTTS
T ss_pred EEEEE--------------------------------------------------------------------eCCCCCc
Confidence 11111 1123333
Q ss_pred ecCC---ceEEEcCCCcEEEEEEE------ecCCCCeEEEEecCCcee------ecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 548 RARP---YSVQVDRGAGVNLLCDV------DGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 548 ~~~p---~~~~v~~G~~~~l~C~~------~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
...+ ....+.+|+.+.|.|.+ .|.|.+.+.|+|++..+. ...++.|.|.++..+|+|.|+|.|.|
T Consensus 104 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~ 183 (315)
T 1itb_B 104 CYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASY 183 (315)
T ss_dssp SSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEE
T ss_pred ccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEc
Confidence 3222 24668899999999998 899999999999986552 34467999999999999999999993
Q ss_pred cCCCce---eeEEEEEEc-----CCCeeecCCc--eeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC----CCe
Q psy17146 613 MGFPEV---GAEATVYLK-----GRPTIISHRT--QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS----DDY 678 (1011)
Q Consensus 613 ~~~~~~---s~~~~l~V~-----~~P~i~~~~~--~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~----~~~ 678 (1011)
...+.. +..+.+.+. .+|.|..+.. ..+.+|+.++|.|.+.|.|.| .+.|++||..+..... .++
T Consensus 184 n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p-~i~W~~~g~~i~~~~~~~~~~~~ 262 (315)
T 1itb_B 184 TYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSD-IAYWKWNGSVIDEDDPVLGEDYY 262 (315)
T ss_dssp EETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTS-EEEEEETTEECCTTCSSEEEEEE
T ss_pred CCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCC-eeEEEECCEECCcccccccccce
Confidence 244443 445555443 6788875543 468899999999999999999 9999999999875332 111
Q ss_pred EEecCCcC--ccceeEEEEcCCCCCC-CEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 679 SVLEDPLK--EGIKSTLIIRESRHDH-FGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 679 ~~~~~~~~--~~~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.+...... ....+.|.|.++..+| +|.|+|.|.|.+|.++.++.|.|.
T Consensus 263 ~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 263 SVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp EECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred eeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 11110000 0134699999999999 999999999999999999999874
No 71
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.96 E-value=7.3e-28 Score=264.63 Aligned_cols=261 Identities=15% Similarity=0.204 Sum_probs=187.0
Q ss_pred CceEecCCCcEEEEeec-CCCCCCceEEEeCCCcee---------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeE
Q psy17146 398 YSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 467 (1011)
Q Consensus 398 ~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 467 (1011)
..+.+.+|+.+.|.|.. .+.|.+.+.|+|++..+. .+....|.|.+++.+|+|.|+|.|.|..+... .
T Consensus 9 ~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~--s 86 (312)
T 2y23_A 9 VVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS--S 86 (312)
T ss_dssp CEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE--E
T ss_pred eeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE--E
Confidence 35678899999998888 468999999999985432 11235799999999999999999997543222 2
Q ss_pred EEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEeccee
Q psy17146 468 ATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRF 547 (1011)
Q Consensus 468 ~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~ 547 (1011)
+.+.+.....+.... ....+|.+
T Consensus 87 ~~l~v~~~~~~~~~~---------------------------------------------------------~~~~~p~~ 109 (312)
T 2y23_A 87 YLIDEEELKRLLALS---------------------------------------------------------HEHKFPTV 109 (312)
T ss_dssp EEECHHHHHHHHHHH---------------------------------------------------------HHHHSCBC
T ss_pred EEEEEeeeeeeeccc---------------------------------------------------------ccCCCCcc
Confidence 223221100000000 00003444
Q ss_pred ecCCc-eEEEcCCCcEEEEEEEe-cCCCCeEEEEecCCceeecC-----------CCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 548 RARPY-SVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVGN-----------SPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 548 ~~~p~-~~~v~~G~~~~l~C~~~-g~p~p~v~W~k~~~~~~~~~-----------~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
...+. ...+.+|+.+.|.|.+. +.|.+.+.|+|++..+.... ..+|.|.++..+|+|.|+|.|.| +
T Consensus 110 ~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~ 188 (312)
T 2y23_A 110 PVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD-G 188 (312)
T ss_dssp CEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEES-S
T ss_pred ccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEe-C
Confidence 33333 77899999999999999 89999999999986543211 12399999999999999999987 3
Q ss_pred CCceeeEEEEE-------------------EcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC
Q psy17146 615 FPEVGAEATVY-------------------LKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 675 (1011)
Q Consensus 615 ~~~~s~~~~l~-------------------V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~ 675 (1011)
.......+.+. ...+|.+..+....+.+|+.++|.|.+.|.|.|..+.|+|+|..+.. .
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~--~ 266 (312)
T 2y23_A 189 KATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV--D 266 (312)
T ss_dssp SCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEE--E
T ss_pred CceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCC--C
Confidence 33333333331 12346666544577899999999999999988768999999999974 3
Q ss_pred CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 676 DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.++.+.. ..+.|.|.++..+|+|.|+|.|.|.+|.++.++.|.++
T Consensus 267 ~~~~~~~------~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 267 EKHDFKD------GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp CCC----------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred CcEEEEC------CEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence 3444432 25799999999999999999999999999999999874
No 72
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.95 E-value=7.2e-28 Score=266.76 Aligned_cols=258 Identities=16% Similarity=0.205 Sum_probs=189.8
Q ss_pred CceEecCCCcEEEEeecCCC---------CCCceEEEeCCCceee----ccCCcEEEEeeccCCCe-EEEEEEEEcCCcc
Q psy17146 398 YSVQVDRGAGVNLLCDVDGN---------PAPEITWIHEDSDKVV----GNSPNLTLLMTSDDLAG-RYYCKASVMGFPE 463 (1011)
Q Consensus 398 ~~~~v~~G~~v~l~C~~~g~---------p~p~v~W~k~~~~~~~----~~~~~L~I~~v~~~d~G-~Y~C~a~n~~~~~ 463 (1011)
....+.+|+.+.|.|.+.+. |.+.++|+|++..... .....|.|.+++.+|+| .|+|.|.|..+..
T Consensus 37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~ 116 (329)
T 3oq3_B 37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDC 116 (329)
T ss_dssp EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTSCE
T ss_pred ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCCce
Confidence 35578999999999999774 5679999999865432 34678999999999999 9999999864432
Q ss_pred eeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEe
Q psy17146 464 VGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTY 543 (1011)
Q Consensus 464 ~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~ 543 (1011)
....+.+.+..
T Consensus 117 ~~~~~~~v~~~--------------------------------------------------------------------- 127 (329)
T 3oq3_B 117 VQGIVRSHIRK--------------------------------------------------------------------- 127 (329)
T ss_dssp EEEEEEEEECC---------------------------------------------------------------------
T ss_pred eeEEEEEEEcC---------------------------------------------------------------------
Confidence 22222222221
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCC-CCeEEEEecCCcee------ecCCCcEEEeecCCCCCEEEEEEEEec-CC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVM-GF 615 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p-~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~-~~ 615 (1011)
+|.+...+....+.+|+.+.|.|.+.|.| .+.+.|+|++..+. ...++.|.|.++..+|+|.|+|.|.|. ..
T Consensus 128 ~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~ 207 (329)
T 3oq3_B 128 PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVR 207 (329)
T ss_dssp CCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTT
T ss_pred CCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccC
Confidence 22222222223356799999999999999 99999999986542 122589999999999999999999983 12
Q ss_pred Cc----eeeEEEEEEcCCC----eeecCCceeeecCCcEEEEEEEEecC---CCCeEEEEECCeEecccCCCCeEEecCC
Q psy17146 616 PE----VGAEATVYLKGRP----TIISHRTQFGIPGDTARVECSAFSIP---PPEKVTWSYRGEEIGVGSSDDYSVLEDP 684 (1011)
Q Consensus 616 ~~----~s~~~~l~V~~~P----~i~~~~~~~v~~G~~v~L~C~~~g~p---~p~~v~W~~~g~~l~~~~~~~~~~~~~~ 684 (1011)
+. .+..+.|.|..+| .+..+....+..|+.++|.|.+.|.| .|+.+.|+++|..+.......+.....
T Consensus 208 g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~- 286 (329)
T 3oq3_B 208 IKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTS- 286 (329)
T ss_dssp SSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEE-
T ss_pred CCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecc-
Confidence 22 3344788888776 33466677899999999999999998 454789999999854322221111000
Q ss_pred cCccceeEEEEcCCCCCCCE-EEEEEEEcCCCCeEEEEEEEe
Q psy17146 685 LKEGIKSTLIIRESRHDHFG-VYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 685 ~~~~~~~~L~I~~~~~~d~G-~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
......+.|.|.++..+|+| .|+|.|.|.+|..+.++.|.|
T Consensus 287 ~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 287 SGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp ETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred cCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 00124689999999999999 999999999999999998876
No 73
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.95 E-value=2.3e-28 Score=265.81 Aligned_cols=260 Identities=18% Similarity=0.223 Sum_probs=196.6
Q ss_pred ecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee-e---ccCCcEEEEeeccCCCeEEEEEEEEcCCcce
Q psy17146 389 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-V---GNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 464 (1011)
Q Consensus 389 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-~---~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 464 (1011)
.+|.|...+.+..+.+|++++|.|.+.+. +.|++++.... . .....|.|.+++.+|+|.|+|.|.|..
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~---- 74 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDP---- 74 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSSCEECCBTTEEEEEESSCCGGGCSCEEECCCC------
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCceEEeccCceEEEEEcccccccCEEEEEEEccCC----
Confidence 47888888889999999999999999874 99998765432 1 223589999999999999999998632
Q ss_pred eeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEec
Q psy17146 465 GAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYG 544 (1011)
Q Consensus 465 s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~ 544 (1011)
|.....+.|.|..+
T Consensus 75 ------------------------------------------------------------------~~~~~~~~l~V~~~ 88 (292)
T 4dkd_C 75 ------------------------------------------------------------------LGGSAAIHLYVKDP 88 (292)
T ss_dssp --------------------------------------------------------------------CCEEECCEECCS
T ss_pred ------------------------------------------------------------------CCcceEEEEEEcCc
Confidence 22233334444444
Q ss_pred ce-eecCCceEEEcCCCcEEEEEEEecCCC--CeEEEEecCCce-------eecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 545 PR-FRARPYSVQVDRGAGVNLLCDVDGNPA--PEITWIHEDSDK-------VVGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 545 P~-~~~~p~~~~v~~G~~~~l~C~~~g~p~--p~v~W~k~~~~~-------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
|. +...+....+.+|+.++|.|.+.+ |. +.+.|++++... ....++.|.|.++..+|+|.|+|.|.|..
T Consensus 89 ~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 167 (292)
T 4dkd_C 89 ARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGG 167 (292)
T ss_dssp SCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTT
T ss_pred cccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCC
Confidence 43 344566788999999999999998 54 789999985332 23335669999999999999999999854
Q ss_pred CCceeeEEEEEEcC----CCeeec-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccc
Q psy17146 615 FPEVGAEATVYLKG----RPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689 (1011)
Q Consensus 615 ~~~~s~~~~l~V~~----~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~ 689 (1011)
....+..+.|.|.. +|.|.. +....+.+|+.++|.|.+.+.|.+..+.|++++..+..... ...... ....
T Consensus 168 ~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~--~~~~ 243 (292)
T 4dkd_C 168 RKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQ--SDFHNN--RYQK 243 (292)
T ss_dssp SCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBE--EEEETT--EEEE
T ss_pred CceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCcc--ceeccc--eeee
Confidence 44456688899986 888874 45556789999999999999887658999999887753221 111111 0123
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 244 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 281 (292)
T 4dkd_C 244 VLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE 281 (292)
T ss_dssp EEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred EEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence 46899999999999999999999999999999999864
No 74
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.95 E-value=1.4e-27 Score=264.93 Aligned_cols=254 Identities=15% Similarity=0.260 Sum_probs=191.7
Q ss_pred eEeeCCCceEecCCCcEEEEeecCCC----CCCceEEEeCCCc----------------------ee-----eccCCcEE
Q psy17146 392 RFRARPYSVQVDRGAGVNLLCDVDGN----PAPEITWIHEDSD----------------------KV-----VGNSPNLT 440 (1011)
Q Consensus 392 ~~~~~p~~~~v~~G~~v~l~C~~~g~----p~p~v~W~k~~~~----------------------~~-----~~~~~~L~ 440 (1011)
.+...+.++.+.+|++++|.|.+.+. +.+.+.|+|++.. +. ......|.
T Consensus 16 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~ 95 (331)
T 3u83_A 16 QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIR 95 (331)
T ss_dssp -----CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEE
T ss_pred ceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEE
Confidence 34456677899999999999999876 4457999996421 11 11356799
Q ss_pred EEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccC
Q psy17146 441 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS 520 (1011)
Q Consensus 441 I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~ 520 (1011)
|.+++.+|+|.|+|.+.+...+..+..+.|
T Consensus 96 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l-------------------------------------------------- 125 (331)
T 3u83_A 96 LSRLELEDEGVYICEFATFPTGNRESQLNL-------------------------------------------------- 125 (331)
T ss_dssp ECSCCGGGCEEEEEEEEEETTEEEEEEEEE--------------------------------------------------
T ss_pred EcccCcccCcEEEEEEEecCCCccEEEEEE--------------------------------------------------
Confidence 999999999999999654323333334444
Q ss_pred CCceEEEcCCCCCcccEEEEEEecceee--cCCceEEEcCC---CcEEEEEE-EecCCCCeEEEEecCCcee-----ecC
Q psy17146 521 SDDYSVHNDVGKSEDSETLDVTYGPRFR--ARPYSVQVDRG---AGVNLLCD-VDGNPAPEITWIHEDSDKV-----VGN 589 (1011)
Q Consensus 521 ~~~y~~~n~~G~~~~~~~l~V~~~P~~~--~~p~~~~v~~G---~~~~l~C~-~~g~p~p~v~W~k~~~~~~-----~~~ 589 (1011)
.|..+|.+. ..+....+.+| +.++|.|. +.+.|.+.+.|++++.... ...
T Consensus 126 -------------------~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~ 186 (331)
T 3u83_A 126 -------------------TVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNP 186 (331)
T ss_dssp -------------------EEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECT
T ss_pred -------------------EEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECC
Confidence 444444442 24556778888 78999997 8999999999999743321 122
Q ss_pred C------CcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee--cCCceeeecCCcEEEEEEEEecCCCCeE
Q psy17146 590 S------PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII--SHRTQFGIPGDTARVECSAFSIPPPEKV 661 (1011)
Q Consensus 590 ~------~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p~~v 661 (1011)
+ ..|.|..+..+|+|.|+|.|.| ..+..+..+.|.|..+|.+. ......+.+|+.++|.|.+.|.|.|..+
T Consensus 187 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n-~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i 265 (331)
T 3u83_A 187 NGTVTVISRYRLVPSREAHQQSLACIVNY-HMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEY 265 (331)
T ss_dssp TSCEEEEEEEEECCCGGGTTCEEEEEEEE-TTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEE
T ss_pred CCcEEEEEEEEEEeccccCCCEEEEEEec-CCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEE
Confidence 2 3477777799999999999999 56778889999999999876 3345568899999999999999999339
Q ss_pred EEEECCeEecccCCCCeEEecCCcCccceeEEEEc-CCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 662 TWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIR-ESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 662 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~-~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|++++..+.. ...+. .++|.|. ++..+|+|.|+|.|.|.+|..+.++.|.|.+
T Consensus 266 ~W~~~~~~~~~----~~~~~--------~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 320 (331)
T 3u83_A 266 HWTTLNGSLPK----GVEAQ--------NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE 320 (331)
T ss_dssp EEEETTBSCCT----TEEEE--------TTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC
T ss_pred EEEECCCcccc----cceec--------CcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEec
Confidence 99999988753 12221 2589999 9999999999999999999999999999864
No 75
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.95 E-value=4e-27 Score=260.62 Aligned_cols=243 Identities=14% Similarity=0.263 Sum_probs=161.3
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC--CCCeeEEeeCCeecCCc---ccCCCCcceEEeecCC---CceeEEEEeeccc
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPH---RNLSGFDRYAMIGSDE---EGDYSLEIYPVML 99 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~---~~~~~~~r~~i~~~~~---~~~~~L~I~~v~~ 99 (1011)
..|...|.++.+.+|++|+|.|.+.+ +.+.+.|+|++...... ..-....|+.+..+.. .+.++|.|.+++.
T Consensus 4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~ 83 (327)
T 2wng_A 4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP 83 (327)
T ss_dssp CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence 45777899999999999999999987 44689999998543110 0011123666544321 4566899999999
Q ss_pred CCCceEEEEEEeCCCCCc-ceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCc--EEEEEeCCceee
Q psy17146 100 DDDARYQCQVSTGILGEP-AIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPA--EITWIDGTGTVM 176 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~-~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~--~i~W~k~~~~l~ 176 (1011)
+|+|.|+|.+.+...... ...+..+.|.|...+.+|.+..+ ...+.+|+.+.|.|. +.+.|++ .++|+|++..+.
T Consensus 84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-~~~~~~g~~~~l~C~-~~g~p~~~~~v~W~k~g~~l~ 161 (327)
T 2wng_A 84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-AARATPQHTVSFTCE-SHGFSPRDITLKWFKNGNELS 161 (327)
T ss_dssp GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-SSCBCTTCEEEEEEE-EEEEBSSCCEEEEEETTEECC
T ss_pred ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-ccccCCCCEEEEEEE-EeCccCCCcEEEEEECCEEcc
Confidence 999999999998643211 12335678999999888887744 467789999999999 5566654 999999998876
Q ss_pred eceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc-eeEEEEEE--EEEeCCceEEEecCcceeecCce
Q psy17146 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT-YKVARLKL--LVKYAPKVQVSVIGSNRLVEGTD 253 (1011)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~-~~s~~v~v--~v~~~P~~~~~~~~~~~v~~g~~ 253 (1011)
...... ....+...+...+.|.|.....+|.|.|+|.|.|..+.. .......+ .+..+|.+.+.... +.+|+.
T Consensus 162 ~~~~~~-~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~---~~~G~~ 237 (327)
T 2wng_A 162 DFQTNV-DPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP---VRAENQ 237 (327)
T ss_dssp CEEEEE-ECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC---CSSTTC
T ss_pred cccccc-ccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC---cCCCCc
Confidence 544322 222233455666789999888888999999999987763 22223333 44556655443322 445555
Q ss_pred EEEEEEcccCCCc-cEEEEEeCCc
Q psy17146 254 VRLYCKAEANPSH-MKYRWYINDQ 276 (1011)
Q Consensus 254 v~L~C~~~~~~~~-~~i~W~~~~~ 276 (1011)
++|.|.+.+.+++ ..+.|++||+
T Consensus 238 v~l~C~~~g~~p~~~~v~W~k~g~ 261 (327)
T 2wng_A 238 VNVTCQVRKFYPQRLQLTWLENGN 261 (327)
T ss_dssp CEEEEEEEEEBSSCEEEEEEETTE
T ss_pred EEEEEEEccccCCCcEEEEEECCe
Confidence 5555555543222 2444444444
No 76
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.95 E-value=1.3e-28 Score=274.28 Aligned_cols=268 Identities=16% Similarity=0.201 Sum_probs=200.6
Q ss_pred EEecceEeeCCCceEecCCCcEEEEeecC-------CCCCCceEEEeCCCce---------eeccCCcEEEEeeccCCCe
Q psy17146 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVD-------GNPAPEITWIHEDSDK---------VVGNSPNLTLLMTSDDLAG 450 (1011)
Q Consensus 387 V~~~P~~~~~p~~~~v~~G~~v~l~C~~~-------g~p~p~v~W~k~~~~~---------~~~~~~~L~I~~v~~~d~G 450 (1011)
....|.|...+.+..+.+|+.+.|.|.+. +.|.+.+.|+|++... +....+.|.|.+++.+|+|
T Consensus 15 ~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G 94 (339)
T 3o4o_C 15 ARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSG 94 (339)
T ss_dssp ---CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCE
T ss_pred chhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCE
Confidence 34578899999999999999999999998 8999999999998652 2234678999999999999
Q ss_pred EEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCC
Q psy17146 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDV 530 (1011)
Q Consensus 451 ~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~ 530 (1011)
.|+|.|.|..+ ..+..+.|.|.
T Consensus 95 ~Y~C~~~n~~g-~~~~~~~l~V~--------------------------------------------------------- 116 (339)
T 3o4o_C 95 TYVCTTRNASY-CDKMSIELRVF--------------------------------------------------------- 116 (339)
T ss_dssp EEECCEEETTE-EEEEEEEEEEE---------------------------------------------------------
T ss_pred EEEEEEECCcc-eEEEEEEEEEE---------------------------------------------------------
Confidence 99999997532 33344444443
Q ss_pred CCCcccEEEEEEecceee--cCCceEEEcCCCcEEEEEE-----EecCCCCeEEEEecCCceeec--------CCCcEEE
Q psy17146 531 GKSEDSETLDVTYGPRFR--ARPYSVQVDRGAGVNLLCD-----VDGNPAPEITWIHEDSDKVVG--------NSPNLTL 595 (1011)
Q Consensus 531 G~~~~~~~l~V~~~P~~~--~~p~~~~v~~G~~~~l~C~-----~~g~p~p~v~W~k~~~~~~~~--------~~~~L~I 595 (1011)
.+|... .......+.+|+.+.|.|. +.+.|.+.+.|+|++..+... ..+.|.|
T Consensus 117 ------------~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i 184 (339)
T 3o4o_C 117 ------------ENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLV 184 (339)
T ss_dssp ------------CSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEE
T ss_pred ------------cCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEE
Confidence 222211 1122346789999999999 889999999999998654322 2358999
Q ss_pred eecCCCCCEEEEEEEEecCCC---ceeeEEEEEEcC-----CCeeecC-CceeeecCCcEEEEEEE---EecC-CCCeEE
Q psy17146 596 LMTSDDLAGRYYCKASVMGFP---EVGAEATVYLKG-----RPTIISH-RTQFGIPGDTARVECSA---FSIP-PPEKVT 662 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~---~~s~~~~l~V~~-----~P~i~~~-~~~~v~~G~~v~L~C~~---~g~p-~p~~v~ 662 (1011)
.++..+|+|.|+|.|.|...+ ..+..+.|.|.. +|.|..+ ....+..|+.++|.|.+ .|.| .+ .+.
T Consensus 185 ~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~-~v~ 263 (339)
T 3o4o_C 185 HDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTT-MLW 263 (339)
T ss_dssp SSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSC-EEE
T ss_pred cccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCc-eEE
Confidence 999999999999999994222 457778888864 5677644 45678899999999999 8999 56 999
Q ss_pred EEECCeEecccC-------CCCeEEecCCcCccceeEEEEcCCCCCCC-EEEEEEEEcCCCCeEEEEEEEec
Q psy17146 663 WSYRGEEIGVGS-------SDDYSVLEDPLKEGIKSTLIIRESRHDHF-GVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 663 W~~~g~~l~~~~-------~~~~~~~~~~~~~~~~~~L~I~~~~~~d~-G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|+++|..+.... ..++.+..+ ......+.|.|.++..+|+ |.|+|.|.|.+|++++.+.+.+.
T Consensus 264 W~~~g~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~~ 334 (339)
T 3o4o_C 264 WTANDTHIESAYPGGRVTEGPRQEYSEN-NENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEH 334 (339)
T ss_dssp EESSSSCSSSSSCSSSCEECCCEECCCS-SSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC-
T ss_pred EEECCeecccccccccceecceEEeccc-CceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhHh
Confidence 999998875321 122222221 0001133899999999998 99999999999999988877653
No 77
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=263.62 Aligned_cols=262 Identities=15% Similarity=0.218 Sum_probs=193.3
Q ss_pred CcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCc------CccEEEEeecccccCCcEEEEEEEcCCccceeeEEE
Q psy17146 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA------SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETL 385 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~------~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l 385 (1011)
+..+.+|+.++|.|.+.+.++...+.|+|+|..+.... ....|.|.+++.+ |+|.|+|.|.|..|.....+.|
T Consensus 15 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~~~n~~g~~~~~~~l 93 (317)
T 2y25_A 15 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKL 93 (317)
T ss_dssp EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCST-TCSCEEEEEESSSCEEEEEECC
T ss_pred eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcc-cCeEEEEEEECCCCcEEEEEEE
Confidence 36788999999999999884334999999999987542 2368999999998 9999999999999987777777
Q ss_pred EEEecceEeeCCCceEecCCCcEEEEeecCC----------CCCCceEEEeCCCceeec---------cCCcEEEEeecc
Q psy17146 386 DVTYGPRFRARPYSVQVDRGAGVNLLCDVDG----------NPAPEITWIHEDSDKVVG---------NSPNLTLLMTSD 446 (1011)
Q Consensus 386 ~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g----------~p~p~v~W~k~~~~~~~~---------~~~~L~I~~v~~ 446 (1011)
.|...|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+... ....|.|.+++.
T Consensus 94 ~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 173 (317)
T 2y25_A 94 VDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTP 173 (317)
T ss_dssp STHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCG
T ss_pred EEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCc
Confidence 7766665555555566778888888888877 789999999998654311 122399999999
Q ss_pred CCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeec----cCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCC
Q psy17146 447 DLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS----HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSD 522 (1011)
Q Consensus 447 ~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~----~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~ 522 (1011)
+|+|.|+|.|.|..+ .....+.+.+........ .....
T Consensus 174 ~d~G~Y~C~a~n~~g-~~~~~~~l~v~~~~~~~~~~~~~~~~~------------------------------------- 215 (317)
T 2y25_A 174 NDKGKYVMELFDGKT-GHQKTVDLSGQAYDEAYAEFQRLKQAA------------------------------------- 215 (317)
T ss_dssp GGCEEEEEEEECSSC-EEEEEEEECHHHHHHHHHHHHHHHHHH-------------------------------------
T ss_pred ccCeeEEEEEEeCCc-eEEEEEEEeeeeccccchhhcccCCcc-------------------------------------
Confidence 999999999998432 333344443321000000 00000
Q ss_pred ceEEEcCCCCCcccEEEEEEecceee-cCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecC----------CC
Q psy17146 523 DYSVHNDVGKSEDSETLDVTYGPRFR-ARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN----------SP 591 (1011)
Q Consensus 523 ~y~~~n~~G~~~~~~~l~V~~~P~~~-~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~----------~~ 591 (1011)
+.....|.+. ..|....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.... ..
T Consensus 216 ----------------~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~ 279 (317)
T 2y25_A 216 ----------------IAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTA 279 (317)
T ss_dssp ----------------HHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEE
T ss_pred ----------------cCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEE
Confidence 0000123333 34667889999999999999999999999999986543211 13
Q ss_pred cEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCC
Q psy17146 592 NLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 629 (1011)
Q Consensus 592 ~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 629 (1011)
.|.|.++..+|+|.|+|.|.| ..|..+..+.|.|..|
T Consensus 280 ~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~l~V~~P 316 (317)
T 2y25_A 280 YFTINGVSTADSGKYGLVVKN-KYGSETSDFTVSVFIP 316 (317)
T ss_dssp EEEEBSCCSTTCEEEEEEEEE-TTEEEEEEEEEEEECC
T ss_pred EEEECCCCHHHCEEEEEEEEe-CCCeEEEEEEEEEEcC
Confidence 899999999999999999999 6788888898888754
No 78
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.95 E-value=5.6e-27 Score=258.05 Aligned_cols=269 Identities=19% Similarity=0.189 Sum_probs=179.5
Q ss_pred eeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee-----eccCCcEEEEeeccCCCeEEEEE
Q psy17146 381 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----VGNSPNLTLLMTSDDLAGRYYCK 455 (1011)
Q Consensus 381 ~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~ 455 (1011)
..+...+..+|.|...|. ..+.+|++++|.|.+.+. .+.+.|+|++.... ......|.|.+++.+|+|.|+|.
T Consensus 15 ~~~~~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 92 (316)
T 3vh8_G 15 KGSHMGGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCR 92 (316)
T ss_dssp ---------CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEE
T ss_pred cccccCCCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEE
Confidence 445556667899988887 578899999999999887 78999999987643 23467899999999999999999
Q ss_pred EEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcc
Q psy17146 456 ASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSED 535 (1011)
Q Consensus 456 a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~ 535 (1011)
|.|.... +..+..+.
T Consensus 93 a~~~~~~-----------------------------------------------------------------~~~~~~s~ 107 (316)
T 3vh8_G 93 GSHPHSP-----------------------------------------------------------------TGWSAPSN 107 (316)
T ss_dssp EBCSSSS-----------------------------------------------------------------SSBCCCCC
T ss_pred EEcCCCC-----------------------------------------------------------------cceecCCC
Confidence 9863211 00111122
Q ss_pred cEEEEEEe---cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee----------cCCCcEEEeecCCCC
Q psy17146 536 SETLDVTY---GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------GNSPNLTLLMTSDDL 602 (1011)
Q Consensus 536 ~~~l~V~~---~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~----------~~~~~L~I~~v~~~d 602 (1011)
...|.|.. +|.+...+... +.+|+.++|.|.+. .+.+.+.|+|++..... ...+.|.|.+++.+|
T Consensus 108 ~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D 185 (316)
T 3vh8_G 108 PVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLAL 185 (316)
T ss_dssp CEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGG
T ss_pred cEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhh
Confidence 23333322 24444444444 78899999999884 45678999999865421 234689999999999
Q ss_pred CEEEEEEEEecCC----CceeeEEEEEEc---CCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC
Q psy17146 603 AGRYYCKASVMGF----PEVGAEATVYLK---GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS 675 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~----~~~s~~~~l~V~---~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~ 675 (1011)
+|.|+|.|.|... ...+..+.|.|. .+|.+...+...+.+|+.++|.|.+. .|.+ .+.|+|+|..+....
T Consensus 186 ~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~-~~~~-~~~W~k~g~~~~~~~- 262 (316)
T 3vh8_G 186 AGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR-SSYD-MYHLSREGGAHERRL- 262 (316)
T ss_dssp CEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEES-SCCS-EEEEEETTSSCCEEE-
T ss_pred CceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECC-CCCc-EEEEEECCCcCCCce-
Confidence 9999999999422 123666777775 45677655445688999999999997 4667 899999998765311
Q ss_pred CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC-----eEEEEEEEecC
Q psy17146 676 DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS-----DSVEIMLKPQK 727 (1011)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~-----~~~~~~l~V~~ 727 (1011)
...... .......|.|.+++ |+|.|+|.|.|..+. .+..+.|.|.+
T Consensus 263 -~~~~~~---~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g 313 (316)
T 3vh8_G 263 -PAVRKV---NRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTG 313 (316)
T ss_dssp -ECEECT---TSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC----
T ss_pred -eceecc---CCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeC
Confidence 111111 12234799999999 999999999998773 45666666643
No 79
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.95 E-value=4.5e-26 Score=252.15 Aligned_cols=275 Identities=18% Similarity=0.283 Sum_probs=183.7
Q ss_pred eEeeCCCceEecCCCcEEEEeecCCC-CCCceEEEeCCCce--------------ee---------ccCCcEEEEeeccC
Q psy17146 392 RFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDK--------------VV---------GNSPNLTLLMTSDD 447 (1011)
Q Consensus 392 ~~~~~p~~~~v~~G~~v~l~C~~~g~-p~p~v~W~k~~~~~--------------~~---------~~~~~L~I~~v~~~ 447 (1011)
.|...|.++.+.+|+++.|.|.+.+. |.+.+.|+|++... .. .....|.|.+++.+
T Consensus 5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~ 84 (327)
T 2wng_A 5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA 84 (327)
T ss_dssp CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence 45667888999999999999999987 88999999987531 11 34567999999999
Q ss_pred CCeEEEEEEEEcCCcc----eeeEEEEEEcCCCe--eeccCcccccCCCeEEEEeEeeeCCCC-CeeEEeeCCeEeeccC
Q psy17146 448 LAGRYYCKASVMGFPE----VGAEATVYLKGRPT--IISHRTQFGIPGDTARVECSAFSIPPP-EKVTWSYRGEEIGVGS 520 (1011)
Q Consensus 448 d~G~Y~C~a~n~~~~~----~s~~~~v~v~~~p~--~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~i~~~~ 520 (1011)
|+|.|+|.|.|.++.. .+..+.|.|..+|. ....+...+.+|+.+.|.|.+.+.+++ ..+.|+++|..+....
T Consensus 85 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~ 164 (327)
T 2wng_A 85 DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQ 164 (327)
T ss_dssp GCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEE
T ss_pred cCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccc
Confidence 9999999999975542 22345566654332 233344667899999999999998766 4999999998874221
Q ss_pred CCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCC
Q psy17146 521 SDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSD 600 (1011)
Q Consensus 521 ~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~ 600 (1011)
.. ...............|.|.....
T Consensus 165 ~~-------------------------------------------------------~~~~~~~~~~~~~s~L~i~~~~~ 189 (327)
T 2wng_A 165 TN-------------------------------------------------------VDPVGESVSYSIHSTAKVVLTRE 189 (327)
T ss_dssp EE-------------------------------------------------------EECSSCCSCEEEEEEEEEECCTT
T ss_pred cc-------------------------------------------------------cccccCCCceEEEEEEEEechhc
Confidence 00 00000000011123577777788
Q ss_pred CCCEEEEEEEEecCCC--ceeeEEEE--EEcCCCeeecCCceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEecccCC
Q psy17146 601 DLAGRYYCKASVMGFP--EVGAEATV--YLKGRPTIISHRTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVGSS 675 (1011)
Q Consensus 601 ~d~G~Y~C~a~n~~~~--~~s~~~~l--~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~~~ 675 (1011)
+|+|.|+|.|.|.... .....+.+ .+..+|.+...... +.+|+.++|.|.+.|.|+ +..|+|+|||+.+.....
T Consensus 190 d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~-~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~ 268 (327)
T 2wng_A 190 DVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP-VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETA 268 (327)
T ss_dssp GGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC-CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEEC
T ss_pred CcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC-cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCccc
Confidence 8899999999994222 23344444 45778888743322 789999999999999654 447999999999875322
Q ss_pred CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEE
Q psy17146 676 DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIML 723 (1011)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l 723 (1011)
..+....+ ......+.|.|.++..+|.|.|+|.|.|..|.. ++++.+
T Consensus 269 ~~~~~~~~-g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~ 316 (327)
T 2wng_A 269 STVTENKD-GTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDL 316 (327)
T ss_dssp CSCEECTT-SCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEEC
T ss_pred CceEECCC-CcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEE
Confidence 22222111 000123679999999999999999999999965 444444
No 80
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.95 E-value=1.1e-26 Score=252.22 Aligned_cols=248 Identities=16% Similarity=0.186 Sum_probs=191.6
Q ss_pred CcccccCCcEEEEEEeecCCCccEEEEEECCeec---CCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEE
Q psy17146 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPV---PAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l---~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 388 (1011)
...+.+|+.++|.|.+.+ .+.|++++... ........|.|.+++.. |+|.|+|.+.|..|..+..+.|.|.
T Consensus 13 ~~~v~~G~~v~L~C~~~~-----~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~~~~~~~~~~~~~~l~V~ 86 (289)
T 3ejj_X 13 ELVVEPGETVTLRCVSNG-----SVEWDGPISPYWTLDPESPGSTLTTRNATFK-NTGTYRCTELEDPMAGSTTIHLYVK 86 (289)
T ss_dssp EEEECTTCCEEEEEECSS-----CCEEECSCSSSSEECCCSSCCEEEESSCCGG-GCEEEEEECCC-----CEEEEEEEC
T ss_pred eEEECCCCCEEEEEEeCC-----cEEEccCCCceEEEeccCCccEEEEeeeccc-cCEEEEEEEeccCCcceeEEEEEEe
Confidence 456889999999999986 49999887543 22356689999999998 9999999999998888889999999
Q ss_pred ecce-EeeCCCceEecCCCcEEEEeecCCCCCCc-eEEEeCCCce-------eeccCCcEEEEeeccCCCeEEEEEEEEc
Q psy17146 389 YGPR-FRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDK-------VVGNSPNLTLLMTSDDLAGRYYCKASVM 459 (1011)
Q Consensus 389 ~~P~-~~~~p~~~~v~~G~~v~l~C~~~g~p~p~-v~W~k~~~~~-------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~ 459 (1011)
.+|. +...+....+.+|+.+.|.|.+.+.|.+. +.|++.+... .......|.|.+++.+|+|.|+|.|.|.
T Consensus 87 ~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~ 166 (289)
T 3ejj_X 87 DPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVN 166 (289)
T ss_dssp CSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeC
Confidence 8776 67777888999999999999999877765 9998754322 2344677999999999999999999964
Q ss_pred CCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEE
Q psy17146 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETL 539 (1011)
Q Consensus 460 ~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l 539 (1011)
.....+..+.|.|...+
T Consensus 167 ~~~~~~~~~~l~V~~~~--------------------------------------------------------------- 183 (289)
T 3ejj_X 167 GRESTSTGIWLKVNRVH--------------------------------------------------------------- 183 (289)
T ss_dssp TEEEECCCEEEEEESSC---------------------------------------------------------------
T ss_pred CCccccccEEEEEEECC---------------------------------------------------------------
Confidence 43333334444332100
Q ss_pred EEEecceeecCCceEEEcCCCcEEEEEEEec-CCCCeEEEEecCCceee-----------cCCCcEEEeecCCCCCEEEE
Q psy17146 540 DVTYGPRFRARPYSVQVDRGAGVNLLCDVDG-NPAPEITWIHEDSDKVV-----------GNSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 540 ~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g-~p~p~v~W~k~~~~~~~-----------~~~~~L~I~~v~~~d~G~Y~ 607 (1011)
..+|.+...+....+.+|+.++|.|.+.+ .|.+.+.|++++..+.. ...+.|.|.++..+|+|.|+
T Consensus 184 --~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 261 (289)
T 3ejj_X 184 --PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYS 261 (289)
T ss_dssp --CCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEE
T ss_pred --CCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEE
Confidence 04567777777788889999999999998 79999999999854421 12468999999999999999
Q ss_pred EEEEecCCCceeeEEEEEEcCCCe
Q psy17146 608 CKASVMGFPEVGAEATVYLKGRPT 631 (1011)
Q Consensus 608 C~a~n~~~~~~s~~~~l~V~~~P~ 631 (1011)
|.|.| ..|..+.++.|.+..++.
T Consensus 262 C~a~N-~~G~~~~s~~L~~~~~~~ 284 (289)
T 3ejj_X 262 CVASN-DVGTRTATMNFQVVESHH 284 (289)
T ss_dssp EEEEC-SSCEEEEEEEEECC----
T ss_pred EEEEc-CCCCccccEEEEEEeccc
Confidence 99999 788999999999977664
No 81
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.95 E-value=1.2e-27 Score=265.70 Aligned_cols=252 Identities=18% Similarity=0.234 Sum_probs=127.3
Q ss_pred eCCcccccCCcEEEEEEeecCCCccEEEEEECCeecCCCc----CccEEEEeecccccCCcEEEEEEEcCCccceeeEEE
Q psy17146 310 IGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAA----SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETL 385 (1011)
Q Consensus 310 ~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~----~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l 385 (1011)
..+..+.+|+.++|.|.+.+.++...+.|+|+|..+.... ....|.|.+++.+ |+|.|+|.|.|. |..+..+.|
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~-D~G~Y~C~a~n~-~~~~~~~~l 92 (334)
T 1ry7_B 15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHE-DSGAYSCRQRLT-QRVLCHFSV 92 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccc-cCEEEEEEEEeC-CeEEEEEEE
Confidence 3567899999999999999874334999999999886532 3568999999998 999999999998 777778888
Q ss_pred EEEecc----------------------eEeeC----CCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee-------
Q psy17146 386 DVTYGP----------------------RFRAR----PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV------- 432 (1011)
Q Consensus 386 ~V~~~P----------------------~~~~~----p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~------- 432 (1011)
.|...| .+... +....+.+|+.+.|.|.+.|.|.+.+.|+|++....
T Consensus 93 ~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~ 172 (334)
T 1ry7_B 93 RVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 172 (334)
T ss_dssp --------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTC
T ss_pred EEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccc
Confidence 887643 22211 234678899999999999999999999999985432
Q ss_pred ---eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEE
Q psy17146 433 ---VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTW 509 (1011)
Q Consensus 433 ---~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W 509 (1011)
......|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|...+.
T Consensus 173 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~~~-------------------------------- 219 (334)
T 1ry7_B 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-SIRQTYTLDVLERSP-------------------------------- 219 (334)
T ss_dssp CCCCTTTTEEEECSCCGGGCCCEEEEEEETTE-EEEEEEEEEEECCCC--------------------------------
T ss_pred eecccceEEEEECCCCcccCEEEEEEEEeCCC-CEEEEEEEEEecCCC--------------------------------
Confidence 12345799999999999999999998543 233344444422110
Q ss_pred eeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeec-CCceEEEcCCCcEEEEEEEecCCCCeEEEEe----cCCc
Q psy17146 510 SYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRA-RPYSVQVDRGAGVNLLCDVDGNPAPEITWIH----EDSD 584 (1011)
Q Consensus 510 ~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~-~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k----~~~~ 584 (1011)
.+|.+.. .|....+.+|+.++|.|.+.|.|.|.+.|+| +|..
T Consensus 220 ---------------------------------~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~ 266 (334)
T 1ry7_B 220 ---------------------------------HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK 266 (334)
T ss_dssp ---------------------------------SSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCS
T ss_pred ---------------------------------CCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCcc
Confidence 0233332 3567789999999999999999999999999 5533
Q ss_pred eeec------------------CCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC
Q psy17146 585 KVVG------------------NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 585 ~~~~------------------~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P 630 (1011)
+... ....|.|.++..+|+|.|+|.|.| ..|.....+.|.|..+|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N-~~G~~~~~~~l~V~~~~ 329 (334)
T 1ry7_B 267 VGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGN-SIGFSHHSAWLVVLPAE 329 (334)
T ss_dssp BCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEE-SSCCEEEEEEEEEECSC
T ss_pred ccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeC-CCCeEEEEEEEEEEECC
Confidence 2211 113799999999999999999999 67888889999997654
No 82
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.95 E-value=3.2e-26 Score=252.01 Aligned_cols=275 Identities=16% Similarity=0.133 Sum_probs=176.3
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
..+|.|...|. ..+.+|++|+|.|.+.+..+.+.|+|++..+..... ......+|.|.+++.+|+|.
T Consensus 22 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~------------~~~~~~~L~I~~v~~~D~G~ 88 (316)
T 3vh8_G 22 QDKPFLSAWPS-AVVPRGGHVTLRCHYRHRFNNFMLYKEDRIHIPIFH------------GRIFQESFNMSPVTTAHAGN 88 (316)
T ss_dssp --CCEEEEESC-SEEETTSCEEEEEEBTTBCCSEEEEESSCSSSCHHH------------HCCBSSCEEECSCCGGGCEE
T ss_pred CCCCEeeccCC-CccCCCCCEEEEEEccCCCceEEEEeCCCccceeec------------CCcceEEEEECCCCcccCeE
Confidence 45688999988 678899999999999988789999999976532110 01123479999999999999
Q ss_pred EEEEEEeCCCC-CcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEE
Q psy17146 105 YQCQVSTGILG-EPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 105 Y~C~~~~~~~~-~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~ 183 (1011)
|+|.+.+.... .....+..+.|.|...+.+|.+...+...+.+|+.+.|.|. +. .+.+.+.|+|++..+........
T Consensus 89 Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~-~~-~~~~~~~w~k~g~~~~~~~~~~~ 166 (316)
T 3vh8_G 89 YTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCW-SD-IMFEHFFLHKEGISKDPSRLVGQ 166 (316)
T ss_dssp EEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEE-ES-SCCSEEEEEETTCCSCCEEEECE
T ss_pred EEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEc-CC-CCCcEEEEEECCCccccceeeee
Confidence 99999864321 12335667888998877677766544445889999999999 43 45679999999887644222111
Q ss_pred eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc---eeEEEEEEEEEeCC-ceEEEecCcceeecCceEEEEEE
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT---YKVARLKLLVKYAP-KVQVSVIGSNRLVEGTDVRLYCK 259 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~---~~s~~v~v~v~~~P-~~~~~~~~~~~v~~g~~v~L~C~ 259 (1011)
.. . ......|.|.+++.+|+|.|+|.|.|..|.. ..+..+.|.|...+ ...+.......
T Consensus 167 ~~--~---~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~------------ 229 (316)
T 3vh8_G 167 IH--D---GVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPK------------ 229 (316)
T ss_dssp EE--T---TEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSC------------
T ss_pred ec--C---CCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCe------------
Confidence 00 0 1234689999999999999999999987742 22455566665422 12222222223
Q ss_pred cccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEE
Q psy17146 260 AEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWY 339 (1011)
Q Consensus 260 ~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~ 339 (1011)
+.+|+.++|.|.+.. +. ..+.|+
T Consensus 230 -------------------------------------------------------v~~G~~v~L~C~~~~-~~-~~~~W~ 252 (316)
T 3vh8_G 230 -------------------------------------------------------VQAGESVTLSCSSRS-SY-DMYHLS 252 (316)
T ss_dssp -------------------------------------------------------CCTTSCCEEEEEESS-CC-SEEEEE
T ss_pred -------------------------------------------------------ecCCCcEEEEEECCC-CC-cEEEEE
Confidence 445555555555542 22 256666
Q ss_pred ECCeecCC---------CcCccEEEEeecccccCCcEEEEEEEcCCcc-----ceeeEEEEEEecc
Q psy17146 340 INDQPVPA---------AASATELYLTNITRHQHDSIVKCEVHNDVGK-----SEDSETLDVTYGP 391 (1011)
Q Consensus 340 k~g~~l~~---------~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~-----~~~s~~l~V~~~P 391 (1011)
|+|..+.. ......|.|.+++ |+|.|+|.|.|..+. .+..+.|.|..+|
T Consensus 253 k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~---D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p 315 (316)
T 3vh8_G 253 REGGAHERRLPAVRKVNRTFQADFPLGPAT---HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315 (316)
T ss_dssp ETTSSCCEEEECEECTTSCEEEEEECC--------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred ECCCcCCCceeceeccCCceeEEEEcCCcC---CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence 66554432 1223688999997 999999999997663 3567777777665
No 83
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.95 E-value=3.2e-26 Score=245.00 Aligned_cols=243 Identities=21% Similarity=0.307 Sum_probs=183.8
Q ss_pred CCcccccCCcEEEEEEeec-CCCc-cEEEEEECCeecCCC--cCccEEEEeec---ccccCCcE--EEEEEEcCCcccee
Q psy17146 311 GSNRLVEGTDVRLYCKAEA-NPSH-MKYRWYINDQPVPAA--ASATELYLTNI---TRHQHDSI--VKCEVHNDVGKSED 381 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~~-~p~~-~~i~W~k~g~~l~~~--~~~~~L~I~~~---~~~~d~G~--Y~C~a~n~~g~~~~ 381 (1011)
.+..+.+|+.++|.|.+.+ .|.+ ..+.|+|+|..+... ..+..+.+..+ ... |+|. |+|.|.|..|..+.
T Consensus 11 ~~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~-d~g~g~Y~C~a~n~~~~~~~ 89 (265)
T 2oz4_A 11 SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAE-DEGTQRLTCAVILGNQSQET 89 (265)
T ss_dssp CCSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEEEECSSEEEEEEEEEECGG-GCEEEEEEEEEEETTEEEEE
T ss_pred cCceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCceEeeCCCeEEEEeecccccc-cCCcceEEEEEecCCCCcEE
Confidence 3457889999999999999 6643 599999999988653 23345666555 555 7774 99999999999888
Q ss_pred eEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee-eccCCcEEEEeeccCCCeEEEEEEEEcC
Q psy17146 382 SETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-VGNSPNLTLLMTSDDLAGRYYCKASVMG 460 (1011)
Q Consensus 382 s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 460 (1011)
++.|.|...|.....+....+.+|+.+.|.|.+. |.+.++| ++.... ......|.|..+..+|+|.|+|.|.|..
T Consensus 90 ~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~ 165 (265)
T 2oz4_A 90 LQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEV 165 (265)
T ss_dssp EEEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCSSEECCEEECCGGGTTEEEEEEEEEEC
T ss_pred EEEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCCCcEEEEEccccccCCceEEEEEEcCC
Confidence 9999998744322234566788999999999998 8999999 655442 2334668899999999999999998632
Q ss_pred CcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEE
Q psy17146 461 FPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLD 540 (1011)
Q Consensus 461 ~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~ 540 (1011)
.+.... ......|.
T Consensus 166 ~g~~~~------------------------------------------------------------------~s~~~~l~ 179 (265)
T 2oz4_A 166 AGQLIH------------------------------------------------------------------KNQTRELR 179 (265)
T ss_dssp SSSEEE------------------------------------------------------------------EEEEEEEE
T ss_pred CCCccc------------------------------------------------------------------ccccEEEE
Confidence 211110 01233445
Q ss_pred EEecceeecC--CceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCce
Q psy17146 541 VTYGPRFRAR--PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618 (1011)
Q Consensus 541 V~~~P~~~~~--p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 618 (1011)
|..+|.+... |.+..+.+|+.++|.|.+.|.|.|.+.|+|++. .....+.|. .++.+|+|.|+|.|.| ..|..
T Consensus 180 V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~--~~~~~g~~~--~v~~~d~G~Y~C~a~N-~~G~~ 254 (265)
T 2oz4_A 180 VLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT--FPLPIGESV--TVTRDLEGTYLCRARS-TQGEV 254 (265)
T ss_dssp EEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTT--EECCTTSCE--ECCGGGCEEEEEEEEE-TTEEE
T ss_pred EEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCc--ccCCCCcEE--EeehhhCeEEEEEEEC-CCCcE
Confidence 6666666443 567889999999999999999999999999998 233334443 4888999999999999 67889
Q ss_pred eeEEEEEEcCC
Q psy17146 619 GAEATVYLKGR 629 (1011)
Q Consensus 619 s~~~~l~V~~~ 629 (1011)
+..+.|.|..|
T Consensus 255 ~~~~~l~V~~p 265 (265)
T 2oz4_A 255 TREVTVNVLSP 265 (265)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEEecC
Confidence 99999998754
No 84
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.94 E-value=5.8e-27 Score=250.77 Aligned_cols=233 Identities=16% Similarity=0.201 Sum_probs=176.3
Q ss_pred EecCCCcEEEEeecCC-CCCC--ceEEEeCCCce---eeccCCcEEEEee---ccCCCeE--EEEEEEEcCCcceeeEEE
Q psy17146 401 QVDRGAGVNLLCDVDG-NPAP--EITWIHEDSDK---VVGNSPNLTLLMT---SDDLAGR--YYCKASVMGFPEVGAEAT 469 (1011)
Q Consensus 401 ~v~~G~~v~l~C~~~g-~p~p--~v~W~k~~~~~---~~~~~~~L~I~~v---~~~d~G~--Y~C~a~n~~~~~~s~~~~ 469 (1011)
.+.+|+.++|.|.+.| .|.+ .++|+|++..+ .......+.+..+ +.+|+|. |+|.|.|..+. .+..+.
T Consensus 14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~-~~~~~~ 92 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS-QETLQT 92 (265)
T ss_dssp EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEE-EEEEEE
T ss_pred eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCceEeeCCCeEEEEeecccccccCCcceEEEEEecCCCC-cEEEEE
Confidence 6889999999999988 7877 99999998543 2334556777666 7788885 99999975322 223333
Q ss_pred EEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeec
Q psy17146 470 VYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRA 549 (1011)
Q Consensus 470 v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~ 549 (1011)
| .|...|....
T Consensus 93 l---------------------------------------------------------------------~V~~~p~p~~ 103 (265)
T 2oz4_A 93 V---------------------------------------------------------------------TIYSFPAPNV 103 (265)
T ss_dssp E---------------------------------------------------------------------EEECCCCCEE
T ss_pred E---------------------------------------------------------------------EEeCCCCcee
Confidence 3 3333221111
Q ss_pred CCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-ecCCCcEEEeecCCCCCEEEEEEEEecCCCcee---eEEEEE
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVG---AEATVY 625 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s---~~~~l~ 625 (1011)
.+.+..+.+|+.++|.|.+. |.+.++| +|..+. ....+.|.|..+..+|+|.|+|.|.|...|... ..+.|.
T Consensus 104 ~~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~ 179 (265)
T 2oz4_A 104 ILTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELR 179 (265)
T ss_dssp EESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEE
T ss_pred ecCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEE
Confidence 23355678899999999998 8999999 665542 234567999999999999999999974445544 778899
Q ss_pred EcCCCeeec---CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCC
Q psy17146 626 LKGRPTIIS---HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 626 V~~~P~i~~---~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d 702 (1011)
|..+|.+.. +....+.+|+.++|.|.+.|.|.| .+.|+|+|..+.. .+ .| ..+..+|
T Consensus 180 V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p-~i~W~~~~~~~~~--------------~g---~~--~~v~~~d 239 (265)
T 2oz4_A 180 VLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP-ELKCLKDGTFPLP--------------IG---ES--VTVTRDL 239 (265)
T ss_dssp EEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCC-EEEEEETTTEECC--------------TT---SC--EECCGGG
T ss_pred EEeCCccccccCCCccEEcCCCeEEEEeECccCCCC-eEEEEECCcccCC--------------CC---cE--EEeehhh
Confidence 999988863 346678999999999999999999 9999999983321 11 12 2377899
Q ss_pred CEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 703 FGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+|.|+|.|.|.+|..+..+.|.|+.
T Consensus 240 ~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 240 EGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CeEEEEEEECCCCcEEEEEEEEEec
Confidence 9999999999999999999998853
No 85
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.94 E-value=1.2e-26 Score=259.35 Aligned_cols=285 Identities=13% Similarity=0.124 Sum_probs=162.1
Q ss_pred CCceeEEecCcEEEEEEEcC-C-----------CCeeEEeeCCeecCCcccCC---CCcceEEeecCCCceeEEEEeecc
Q psy17146 34 PQDQTAVVGSRVTLPCRVID-K-----------TGVLQWTKDDFALGPHRNLS---GFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~-~-----------~~~v~W~k~~~~l~~~~~~~---~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+.++.+.+|++|+|.|.+.+ + .+.+.|+|++........+. ...|+... ..+|.|.+++
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~------~~~L~i~~~~ 87 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE------KDVLWFRPTL 87 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEE------TTEEEESSCC
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeec------CCEEEEccCC
Confidence 57899999999999999986 2 37999999985332222222 22333332 1279999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCe--eecCCeeeecCCCcEEEEEEc----cCCCCCcEEEEEeCC
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR--IVQGDTLYTTEDREIELECIS----ANGKPPAEITWIDGT 172 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~--i~~~~~~~v~eg~~v~L~C~~----~~g~P~~~i~W~k~~ 172 (1011)
.+|+|.|+|.+.|.. +..+..+.|+|..++.... +..+....+.+|+.+.|.|.+ ..+.|.+.++|+|++
T Consensus 88 ~~D~G~Y~C~a~n~~----~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~ 163 (349)
T 4dep_C 88 LNDTGNYTCMLRNTT----YCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC 163 (349)
T ss_dssp GGGCEEEEEEEECSS----CEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETT
T ss_pred hhhCEEEEEEEecCC----ceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCC
Confidence 999999999998853 3455668888887654221 122335577899999999973 267899999999998
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCce--eEEEEEEEEEeC------CceEEEecC
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY--KVARLKLLVKYA------PKVQVSVIG 244 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~--~s~~v~v~v~~~------P~~~~~~~~ 244 (1011)
..+....++ ...+..|.|.+++.+|+|.|+|.|.|..+... .+..+.|.|... |.+. ....
T Consensus 164 ~~l~~~~~~----------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~-~~~~ 232 (349)
T 4dep_C 164 YKIQNFNNV----------IPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIH-SPND 232 (349)
T ss_dssp EECCSCSSE----------EEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC-----
T ss_pred EECCCccce----------eecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEe-cCCC
Confidence 876432222 12224799999999999999999999874442 467777777653 3221 1111
Q ss_pred cc--eeecCceEEEEEEcccC---CCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCC
Q psy17146 245 SN--RLVEGTDVRLYCKAEAN---PSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGT 319 (1011)
Q Consensus 245 ~~--~v~~g~~v~L~C~~~~~---~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~ 319 (1011)
.. .+.+|+.++|.|.+.+. .+.+.+.|++++..+...... +....
T Consensus 233 ~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~------------------------------~~~~~ 282 (349)
T 4dep_C 233 HVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITID------------------------------VTINE 282 (349)
T ss_dssp ------------CCCEEEEECCCTTCCCEEEEESSCC--------------------------------------CCCCE
T ss_pred ceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCc------------------------------ccccc
Confidence 11 44556666666666532 222455555555443221000 00000
Q ss_pred cEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCC-cEEEEEEEcCCccceeeEEEEEEe
Q psy17146 320 DVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHD-SIVKCEVHNDVGKSEDSETLDVTY 389 (1011)
Q Consensus 320 ~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~-G~Y~C~a~n~~g~~~~s~~l~V~~ 389 (1011)
. ...+..+ .......|.|.++..+ |+ |.|+|.|.|..|..+..+.|.|..
T Consensus 283 ~--------------~~~~~~~-----~~~~~~~L~i~~v~~~-d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 283 S--------------ISHSRTE-----DETRTQILSIKKVTSE-DLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp E--------------EECCTTC-----CEEEEECC--------------CEEEEECSSCEEEEECC-----
T ss_pred c--------------eeeecCC-----CcEEEEEEEEeeccHH-HcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 0 0000000 0012345999999998 99 999999999999998888888876
No 86
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=251.95 Aligned_cols=259 Identities=14% Similarity=0.183 Sum_probs=180.5
Q ss_pred ceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce---e-e-cc---CCcEEEEeeccCCCeEEEEEEEEcCCc
Q psy17146 391 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK---V-V-GN---SPNLTLLMTSDDLAGRYYCKASVMGFP 462 (1011)
Q Consensus 391 P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~---~-~-~~---~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 462 (1011)
|.|.....+..+.+|++++|.|.+.|. ++|+|++... . . .. ...|.|.+++.+|+|.|+|.|.|..+.
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~ 76 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGL 76 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC----
T ss_pred CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCC
Confidence 345555567789999999999999875 9999998763 1 1 11 257999999999999999999975432
Q ss_pred c--eeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEE
Q psy17146 463 E--VGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLD 540 (1011)
Q Consensus 463 ~--~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~ 540 (1011)
. .+..+.|.+..+..
T Consensus 77 ~~~~~~~~~v~v~~p~~--------------------------------------------------------------- 93 (289)
T 3mjg_X 77 ETDERKRLYIFVPDPTV--------------------------------------------------------------- 93 (289)
T ss_dssp --CCCEEEEEECCCTTC---------------------------------------------------------------
T ss_pred CcCcEEeEEEEEECCCc---------------------------------------------------------------
Confidence 1 22333333321110
Q ss_pred EEecceeecCCc--eEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec----CCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 541 VTYGPRFRARPY--SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG----NSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 541 V~~~P~~~~~p~--~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~----~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
|.+...+. ...+.+|+.+.|.|.+. .|.+.++|++++...... ....+. ..+|+|.|+|.|.|..
T Consensus 94 ----~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~~~~~~~~----~~~d~G~Y~C~a~n~~ 164 (289)
T 3mjg_X 94 ----GFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYDHQRGFS----GIFEDRSYICKTTIGD 164 (289)
T ss_dssp ----CBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCEETTTEEE----ECCCSSEEEEEEEETT
T ss_pred ----CcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceeecCCcCee----eeccCcEEEEEEEeCC
Confidence 11111111 26789999999999999 788999999986332221 111222 4679999999999854
Q ss_pred CCceeeEEEEEEcC--CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcccee
Q psy17146 615 FPEVGAEATVYLKG--RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691 (1011)
Q Consensus 615 ~~~~s~~~~l~V~~--~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 691 (1011)
....+..+.|.|.. +|.+. .+....+.+|++++|.|.+.|.|.| .+.|+++++...... ...............+
T Consensus 165 ~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p-~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 242 (289)
T 3mjg_X 165 REVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVV-NFEWTYPRKESGRLV-EPVTDFLLDMPYHIRS 242 (289)
T ss_dssp EEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSB-EEEEECTTSSSSCCC-CCEEEESCTTTTEEEE
T ss_pred ceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCc-ceEEEcCCccCCCcc-cccccccCCcceEEEE
Confidence 45556666777765 66665 3355679999999999999999999 999999877543211 1111111111123468
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 692 TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 692 ~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|.|.++..+|+|.|+|.|.|.+|..+.++.|.|..
T Consensus 243 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~ 278 (289)
T 3mjg_X 243 ILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278 (289)
T ss_dssp EEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred EEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEE
Confidence 999999999999999999999999999999998853
No 87
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.94 E-value=5e-27 Score=258.44 Aligned_cols=251 Identities=15% Similarity=0.187 Sum_probs=191.5
Q ss_pred CcccccCCcEEEEEEeecCCCccEEEEEECCeecCCC--------cCccEEEEeecccccCCcEEEEEEEcCCccceeeE
Q psy17146 312 SNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA--------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSE 383 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~--------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~ 383 (1011)
...+.+|+.++|.|.+.+.+....+.|+|+|..+... .....|.|.+++.+ |+|.|+|.|.|..|......
T Consensus 14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~-D~G~Y~C~a~n~~g~~~~~~ 92 (315)
T 1itb_B 14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVE-DSGHYYCVVRNSSYCLRIKI 92 (315)
T ss_dssp CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGG-GCSCCEECCCSSSCCCCEEC
T ss_pred EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChh-hCEEEEEEEeCCceEEEEEE
Confidence 4678999999999999999844499999998654321 23458999999998 99999999999988776666
Q ss_pred EEEEEe-cceEeeCC---CceEecCCCcEEEEeec------CCCCCCceEEEeCCCce------eeccCCcEEEEeeccC
Q psy17146 384 TLDVTY-GPRFRARP---YSVQVDRGAGVNLLCDV------DGNPAPEITWIHEDSDK------VVGNSPNLTLLMTSDD 447 (1011)
Q Consensus 384 ~l~V~~-~P~~~~~p---~~~~v~~G~~v~l~C~~------~g~p~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~ 447 (1011)
.+.+.. +|.+...+ ....+.+|+++.|.|.+ .|.|.+.+.|+|++..+ .......|.|.+++.+
T Consensus 93 ~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~ 172 (315)
T 1itb_B 93 SAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEK 172 (315)
T ss_dssp CCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGG
T ss_pred EEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEeceeh
Confidence 666543 45444333 23578899999999998 89999999999998654 2345678999999999
Q ss_pred CCeEEEEEEE-EcCCccee--eEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCce
Q psy17146 448 LAGRYYCKAS-VMGFPEVG--AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY 524 (1011)
Q Consensus 448 d~G~Y~C~a~-n~~~~~~s--~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y 524 (1011)
|+|.|+|.|. |..+...+ ..+.+.+..+.
T Consensus 173 d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~------------------------------------------------ 204 (315)
T 1itb_B 173 HRGNYTCHASYTYLGKQYPITRVIEFITLEEN------------------------------------------------ 204 (315)
T ss_dssp GCEEEEEEEEEEETTEEEEEEEEEEEEEECCC------------------------------------------------
T ss_pred hCcEEEEEEEcCCCCcEEEEEEEEEEEEecCC------------------------------------------------
Confidence 9999999999 55443322 22222211000
Q ss_pred EEEcCCCCCcccEEEEEEecceeecCCce-EEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec---------------
Q psy17146 525 SVHNDVGKSEDSETLDVTYGPRFRARPYS-VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG--------------- 588 (1011)
Q Consensus 525 ~~~n~~G~~~~~~~l~V~~~P~~~~~p~~-~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~--------------- 588 (1011)
...+|.+...+.. ..+.+|+.++|.|.+.|.|.|.+.|+++|..+...
T Consensus 205 ----------------~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~ 268 (315)
T 1itb_B 205 ----------------KPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268 (315)
T ss_dssp ----------------CCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSS
T ss_pred ----------------CCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccC
Confidence 0135666666654 57899999999999999999999999988543221
Q ss_pred ------CCCcEEEeecCCCC-CEEEEEEEEecCCCceeeEEEEEEcC
Q psy17146 589 ------NSPNLTLLMTSDDL-AGRYYCKASVMGFPEVGAEATVYLKG 628 (1011)
Q Consensus 589 ------~~~~L~I~~v~~~d-~G~Y~C~a~n~~~~~~s~~~~l~V~~ 628 (1011)
..+.|+|.++..+| +|.|+|.|.| ..|..+..+.|.|+.
T Consensus 269 ~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N-~~G~~~~~~~l~v~~ 314 (315)
T 1itb_B 269 NKRRSTLITVLNISEIESRFYKHPFTCFAKN-THGIDAAYIQLIYPV 314 (315)
T ss_dssp CGGGEEEEEEEEESSCCGGGGTSCEEEEEEC-TTCCEEEEEEEECCC
T ss_pred CCceeEEEEEEEEeecCHHHcCCceEEEEec-CCCceeEEEEEEecC
Confidence 12389999999999 9999999999 688888999888864
No 88
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.94 E-value=5.6e-25 Score=258.29 Aligned_cols=380 Identities=14% Similarity=0.150 Sum_probs=219.8
Q ss_pred eCCcccccCCcEEEEEEeecCCC-c--cEEEEEEC--Ceec------------------CCC--------cCccEEEEee
Q psy17146 310 IGSNRLVEGTDVRLYCKAEANPS-H--MKYRWYIN--DQPV------------------PAA--------ASATELYLTN 358 (1011)
Q Consensus 310 ~~~~~v~~g~~v~l~C~~~~~p~-~--~~i~W~k~--g~~l------------------~~~--------~~~~~L~I~~ 358 (1011)
.....+.+|+.++|.|.+.+.+. . ..+.|||. |..+ ... .....|.|.+
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 86 (512)
T 1zvo_C 7 SGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRS 86 (512)
T ss_pred CCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECc
Confidence 45678899999999999987542 1 48999985 2211 000 1135899999
Q ss_pred cccccCCcEEEEEEEcCCc-----------c--ceeeEEEEEEe----cceEe-eCCCceEecCCCcEEEEeecCCC-CC
Q psy17146 359 ITRHQHDSIVKCEVHNDVG-----------K--SEDSETLDVTY----GPRFR-ARPYSVQVDRGAGVNLLCDVDGN-PA 419 (1011)
Q Consensus 359 ~~~~~d~G~Y~C~a~n~~g-----------~--~~~s~~l~V~~----~P~~~-~~p~~~~v~~G~~v~l~C~~~g~-p~ 419 (1011)
++.+ |+|.|.|.+.+..+ . ....+.|.|.. +|.+. ..+......+|+.+.|.|.+.|. |.
T Consensus 87 v~~~-Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~ 165 (512)
T 1zvo_C 87 MSAA-DTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPT 165 (512)
T ss_pred CCHH-HCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecC
Confidence 9998 99999999988642 1 12446777774 45443 22222212346899999999886 76
Q ss_pred C-ceEEEeCCCcee-------eccCC------cEEEEeeccCCCeEEEEEEEEcCCcceeeE----------EEEEEcCC
Q psy17146 420 P-EITWIHEDSDKV-------VGNSP------NLTLLMTSDDLAGRYYCKASVMGFPEVGAE----------ATVYLKGR 475 (1011)
Q Consensus 420 p-~v~W~k~~~~~~-------~~~~~------~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~----------~~v~v~~~ 475 (1011)
+ .++|++++.... ....+ .|.|.....+ .|.|+|.|.|..+...... +.|.+..+
T Consensus 166 p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~p 244 (512)
T 1zvo_C 166 SVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQ 244 (512)
T ss_pred ceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCC
Confidence 5 899999764311 11112 3677766666 9999999999654322111 01111111
Q ss_pred CeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeecc-----CCCceEEEcCCCCCcccEEEEEEeccee-ec
Q psy17146 476 PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG-----SSDDYSVHNDVGKSEDSETLDVTYGPRF-RA 549 (1011)
Q Consensus 476 p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~-----~~~~y~~~n~~G~~~~~~~l~V~~~P~~-~~ 549 (1011)
|.+.... .+ + ...-...++| .+... +.+ ++ .++.+... +.......+|.+ ..
T Consensus 245 p~~~~~~-----~~--------~-----~~~~~~~~~g-~~~~~~~~~~~~~-~~-h~~~~~~~-~~~~~~~~~p~v~~~ 302 (512)
T 1zvo_C 245 PQAEGSL-----AK--------A-----TTAPATTRNT-GRGGEEKKKEKEK-EE-QEERETKT-PECPSHTQPLGVYLL 302 (512)
T ss_pred Cchhccc-----cc--------c-----ccCchhhccC-cccccceeccCCc-cc-ccccCccc-ccCCCCCCCCEEEEE
Confidence 1100000 00 0 0000000111 00000 000 00 00000000 000001234544 33
Q ss_pred CCceEEEcCCCcEEEEEEEecCCCC--eEEEEecCCcee---------ecCC------CcEEEeecCCCCCEEEEEEEEe
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDKV---------VGNS------PNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p~p--~v~W~k~~~~~~---------~~~~------~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
.|....+.+|+.++|.|.+.|+.++ .|+|+|+|.... ...+ +.|.|..+..+|+|.|+|+|.|
T Consensus 303 ~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n 382 (512)
T 1zvo_C 303 TPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNH 382 (512)
T ss_pred CCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEe
Confidence 4555567789999999999997443 899999986432 0112 2489999999999999999999
Q ss_pred cCCCceeeEEEEEE----cCCCeeec-CCceeeecCCcEE-EEEEEEecC-CCCeEEEEECCeEecccCCCCeEEecCCc
Q psy17146 613 MGFPEVGAEATVYL----KGRPTIIS-HRTQFGIPGDTAR-VECSAFSIP-PPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V----~~~P~i~~-~~~~~v~~G~~v~-L~C~~~g~p-~p~~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
.........+.+.. ..+|.+.. +... .|+.++ |.|.+.|.+ +.+.|+|+|||.++.........+..+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~-- 457 (512)
T 1zvo_C 383 PSLPPQRLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQ-- 457 (512)
T ss_pred CCCCCCceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeEC--
Confidence 43322222222211 34676652 2222 789999 999999964 445799999999986421110011111
Q ss_pred Ccc----ceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 686 KEG----IKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 686 ~~~----~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
.++ ..+.|.|.....+|.|.|+|.|.|......
T Consensus 458 ~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~ 494 (512)
T 1zvo_C 458 PGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTL 494 (512)
T ss_pred CCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCc
Confidence 122 235788888888889999999999977543
No 89
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.94 E-value=3.4e-26 Score=253.30 Aligned_cols=244 Identities=15% Similarity=0.243 Sum_probs=185.5
Q ss_pred CcccccCCcEEEEEEeecCC--------CccEEEEEECCeecCCC---cCccEEEEeecccccCCc-EEEEEEEcCCccc
Q psy17146 312 SNRLVEGTDVRLYCKAEANP--------SHMKYRWYINDQPVPAA---ASATELYLTNITRHQHDS-IVKCEVHNDVGKS 379 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~~~~~p--------~~~~i~W~k~g~~l~~~---~~~~~L~I~~~~~~~d~G-~Y~C~a~n~~g~~ 379 (1011)
...+.+|+.+.|.|.+.+.+ +...+.|+|++..+... .....|.|.+++.+ |+| .|+|.|.|..|..
T Consensus 38 ~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~-D~Gs~Y~C~a~n~~g~~ 116 (329)
T 3oq3_B 38 NDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSN-DSHRRYLCTVTTKNGDC 116 (329)
T ss_dssp EEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTEETTEEEESSCCGG-GGGCCEEEEEECTTSCE
T ss_pred eEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCceeecceEEEcCCChH-hCCCcEEEEEEeCCCce
Confidence 34689999999999999853 22499999999876432 33678999999998 999 9999999998875
Q ss_pred eeeEEEEEE-ecceEeeCCCceEecCCCcEEEEeecCCCC-CCceEEEeCCCcee------eccCCcEEEEeeccCCCeE
Q psy17146 380 EDSETLDVT-YGPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGR 451 (1011)
Q Consensus 380 ~~s~~l~V~-~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p-~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~ 451 (1011)
.....+.|. .+|.+...+....+.+|+.+.|.|.+.|.| .+.+.|+|++.... ......|.|.+++.+|+|.
T Consensus 117 ~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~ 196 (329)
T 3oq3_B 117 VQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGR 196 (329)
T ss_dssp EEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECSCCGGGCEE
T ss_pred eeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEeecChhhCEE
Confidence 544433443 355544433344577899999999999999 89999999986542 2236789999999999999
Q ss_pred EEEEEEEc--CC-cce--eeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEE
Q psy17146 452 YYCKASVM--GF-PEV--GAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV 526 (1011)
Q Consensus 452 Y~C~a~n~--~~-~~~--s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~ 526 (1011)
|+|.|.|. .+ ... +..+.|.
T Consensus 197 Y~C~a~n~~~~g~~~~~~s~~~~l~------------------------------------------------------- 221 (329)
T 3oq3_B 197 YDCYVHYDDVRIKNDIVVSRCKILT------------------------------------------------------- 221 (329)
T ss_dssp EEEEEEECCTTSSSCEEEEEEEEEE-------------------------------------------------------
T ss_pred EEEEEEecccCCCceeEEEeeEEEE-------------------------------------------------------
Confidence 99999984 22 211 1223333
Q ss_pred EcCCCCCcccEEEEEEecc----eeecCCceEEEcCCCcEEEEEEEecCC---CC-eEEEEecCCceeec----------
Q psy17146 527 HNDVGKSEDSETLDVTYGP----RFRARPYSVQVDRGAGVNLLCDVDGNP---AP-EITWIHEDSDKVVG---------- 588 (1011)
Q Consensus 527 ~n~~G~~~~~~~l~V~~~P----~~~~~p~~~~v~~G~~~~l~C~~~g~p---~p-~v~W~k~~~~~~~~---------- 588 (1011)
|..+| .+. .|....+.+|+.++|.|.+.|.| .+ .+.|+|++..+...
T Consensus 222 --------------V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~ 286 (329)
T 3oq3_B 222 --------------VIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTS 286 (329)
T ss_dssp --------------EECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEE
T ss_pred --------------EECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecc
Confidence 33333 222 56678899999999999999998 77 88999998763211
Q ss_pred ----CCCcEEEeecCCCCCE-EEEEEEEecCCCceeeEEEEEEc
Q psy17146 589 ----NSPNLTLLMTSDDLAG-RYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 589 ----~~~~L~I~~v~~~d~G-~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
..+.|+|.++..+|+| .|+|.|.| ..|..+..+.|.|+
T Consensus 287 ~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N-~~G~~~~~~~l~v~ 329 (329)
T 3oq3_B 287 SGGITEATLYFENVTEEYIGNTYTCRGHN-YYFDKTLTTTVVLE 329 (329)
T ss_dssp ETTEEEEEEEESSCCGGGTTCEEEEEEEC-SSCEEEEEEEEEEC
T ss_pred cCceeEeEEEEEeccHHHCCCcEEEEEEe-cCCceEEEEEEEeC
Confidence 2467999999999999 99999999 67888888888763
No 90
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.9e-25 Score=245.23 Aligned_cols=265 Identities=14% Similarity=0.152 Sum_probs=184.4
Q ss_pred CCceeEEecCcEEEEEEEcC--CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEe
Q psy17146 34 PQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVST 111 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 111 (1011)
+..+.+.+|++++|.|.... +.+.+.|+|++..+.. ..|+.+..+ .+..+|+|.+++.+|+|.|+|.+.+
T Consensus 8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~------~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~~~n 79 (312)
T 2y23_A 8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTED------SPRLEVESK--GNKTKMTFKDLGMDDLGIYSCDVTD 79 (312)
T ss_dssp CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTT------CTTEEEEEE--TTEEEEEESSCCGGGCEEEEEEESS
T ss_pred ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCC------CCCEEEEEe--CCEEEEEECcCCccCCEEEEEEEEe
Confidence 34678889999999999874 6679999999987642 357777653 3456899999999999999999988
Q ss_pred CCCCCcceeeeEEEEEEEc------------CCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeece
Q psy17146 112 GILGEPAIRSRFATLTVLV------------PPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNV 179 (1011)
Q Consensus 112 ~~~~~~~~~s~~~~l~V~~------------~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~ 179 (1011)
..+. .....|.|.. .|.... .......+.+|+.+.|.|.+..+.|.+.+.|+|++..+..+.
T Consensus 80 ~~g~-----~~s~~l~v~~~~~~~~~~~~~~~p~~~~-~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~ 153 (312)
T 2y23_A 80 TDGI-----ASSYLIDEEELKRLLALSHEHKFPTVPV-KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP 153 (312)
T ss_dssp SCCC-----CEEEEECHHHHHHHHHHHHHHHSCBCCE-EEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSS
T ss_pred CCCc-----EEEEEEEEeeeeeeecccccCCCCcccc-ccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCC
Confidence 5431 2234555542 333222 122267788999999999954489999999999999887765
Q ss_pred eEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE-------------------EeCCceEE
Q psy17146 180 RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV-------------------KYAPKVQV 240 (1011)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v-------------------~~~P~~~~ 240 (1011)
++......... ..+|.|.+++.+|+|.|+|.|.+..+. ....+.+.. ..+|.+..
T Consensus 154 ~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 227 (312)
T 2y23_A 154 KYKMHIDRNTG----IIEMFMEKLQDEDEGTYTFQLQDGKAT--NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 227 (312)
T ss_dssp SCEEEEETTTT----EEEEEESCCCGGGCEEEEEEEESSSCE--EEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEE
T ss_pred cEEEEEccCCC----EEEEEEccCCcccCEeEEEEEEeCCce--EEEEEEEcchhhhhhcccccccccchhhccCCceee
Confidence 55433332221 257999999999999999999864332 222222210 00121110
Q ss_pred EecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCc
Q psy17146 241 SVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTD 320 (1011)
Q Consensus 241 ~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~ 320 (1011)
. ....+.+|+.
T Consensus 228 ~---------------------------------------------------------------------~~~~v~~G~~ 238 (312)
T 2y23_A 228 Y---------------------------------------------------------------------LSWEVTGECN 238 (312)
T ss_dssp E---------------------------------------------------------------------EEEEEETTTE
T ss_pred c---------------------------------------------------------------------ceEEEeCCCE
Confidence 0 0123556677
Q ss_pred EEEEEEeecCCCccEEEEEECCeecCCC------cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEE
Q psy17146 321 VRLYCKAEANPSHMKYRWYINDQPVPAA------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388 (1011)
Q Consensus 321 v~l~C~~~~~p~~~~i~W~k~g~~l~~~------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 388 (1011)
+.|.|.+.+.|.+..+.|+|+|..+..+ .....|.|.++..+ |+|.|+|.|.|..|..+.++.|.|.
T Consensus 239 ~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~-d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 239 VLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp EEEEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGG-GCEEEEEEEESTTCCEEEEEEECSC
T ss_pred EEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHH-HCEEEEEEEEcCCCceeeeeEEEec
Confidence 7777777776655567777777766521 22368999999998 9999999999999999888887653
No 91
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.94 E-value=2.9e-25 Score=273.44 Aligned_cols=452 Identities=13% Similarity=0.112 Sum_probs=251.8
Q ss_pred ccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCcccee-eEEEEEE---ecc
Q psy17146 316 VEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSED-SETLDVT---YGP 391 (1011)
Q Consensus 316 ~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~-s~~l~V~---~~P 391 (1011)
...+.++|.|.+.|.|.+ .+.|.|+|..+.. -....+.|..+......+.|+|.+.|..|.... .+.+.+. .+|
T Consensus 89 ~~~g~l~v~c~~~g~P~p-~i~W~k~g~~~~~-~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p 166 (731)
T 2v5y_A 89 SPPGLLNVYVKVNNGPLG-NPIWNISGDPTRT-WNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTP 166 (731)
T ss_dssp SCSEEEEEEEEETTCCCC-SEEEEECCCCCSS-CEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSC
T ss_pred CCcceEEEEEecCCCCcc-ceeEEEeCCcCCc-eeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeeccccccc
Confidence 345689999999999987 8999999988754 344566676543332457999988888886532 2222221 367
Q ss_pred eEeeCCCceEecCCCcEEEEeecCCCCCCceE-EE--eCCCceeec---------cCCcEEEEeeccCCCeEEEEEEEEc
Q psy17146 392 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEIT-WI--HEDSDKVVG---------NSPNLTLLMTSDDLAGRYYCKASVM 459 (1011)
Q Consensus 392 ~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~-W~--k~~~~~~~~---------~~~~L~I~~v~~~d~G~Y~C~a~n~ 459 (1011)
.|. .+.+..+.+|++++|.|.+.|.|.|.+. |+ +++..+... ..+.|.|.++..+|+|.|+|.|.|.
T Consensus 167 ~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~ 245 (731)
T 2v5y_A 167 HFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTE 245 (731)
T ss_dssp EEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEET
T ss_pred ccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECC
Confidence 776 5678899999999999999999999998 88 566543211 1357999999999999999999997
Q ss_pred CCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCC--CCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccE
Q psy17146 460 GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIP--PPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSE 537 (1011)
Q Consensus 460 ~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~ 537 (1011)
.+...+..+.|.|..+|.....+.........+.+.|.....+ .++ .
T Consensus 246 ~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i--~----------------------------- 294 (731)
T 2v5y_A 246 GGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPI--V----------------------------- 294 (731)
T ss_dssp TEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCC--C-----------------------------
T ss_pred CCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCcc--E-----------------------------
Confidence 6655666677777776665443333223344455554432110 000 0
Q ss_pred EEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc---eeecCCCcEEEeecCCCCCEEEEEEEE--e
Q psy17146 538 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---KVVGNSPNLTLLMTSDDLAGRYYCKAS--V 612 (1011)
Q Consensus 538 ~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~---~~~~~~~~L~I~~v~~~d~G~Y~C~a~--n 612 (1011)
.-.|.|...+.. .......+++|.++...+.+.|+|.|. |
T Consensus 295 -----------------------------------~Y~v~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N 339 (731)
T 2v5y_A 295 -----------------------------------AREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPG 339 (731)
T ss_dssp -----------------------------------EEEEEEEESSSSCEEEEECCSSEEEECSCCTTCEEEEEEEEECSS
T ss_pred -----------------------------------EEEEEEEECCCCceEEeccCcceEEEeCCCCCCEEEEEEEEEecC
Confidence 002223322211 122345789999999999999999999 8
Q ss_pred c-CCCceeeEEEEEEcC--CCeeecCCce--eeecCCcEEEEEEEEecC---C---CCeEEEEECCeEecccCCCCeEEe
Q psy17146 613 M-GFPEVGAEATVYLKG--RPTIISHRTQ--FGIPGDTARVECSAFSIP---P---PEKVTWSYRGEEIGVGSSDDYSVL 681 (1011)
Q Consensus 613 ~-~~~~~s~~~~l~V~~--~P~i~~~~~~--~v~~G~~v~L~C~~~g~p---~---p~~v~W~~~g~~l~~~~~~~~~~~ 681 (1011)
. +.+..+..+.+.... ||. .+... .......+.|.+...... . -..|.|...+.. ........
T Consensus 340 ~~G~s~~S~~~~~~t~~~~p~~--~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~----~~~~~~~~ 413 (731)
T 2v5y_A 340 EGGTGSPGPALRTRTKCADPMR--GPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGG----QEQVREEV 413 (731)
T ss_dssp TTCSCCBCCCEEEECCCCCCSC--CCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESSS----SEEEEEEE
T ss_pred CCccccCCCcEEeeecCCCCCC--CCceeEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEccCC----CCccceeE
Confidence 3 333333333332221 111 11111 122344566666542110 0 113444332210 00000000
Q ss_pred cCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCC
Q psy17146 682 EDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKK 761 (1011)
Q Consensus 682 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 761 (1011)
..........+.|.++.+...+.|++.|.|..|... +..+.+... ...|
T Consensus 414 -~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~-----------------------------~~~P 462 (731)
T 2v5y_A 414 -SWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTD-----------------------------EDLP 462 (731)
T ss_dssp -ECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEECC-----------------------------CCCC
T ss_pred -EEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEEcc-----------------------------CCCC
Confidence 001122346789999999999999999999999642 333333211 1122
Q ss_pred CCCC--CCcccccccccccccc-cCCCCCCCCcCcceeeecCcc----------------------------cccccccc
Q psy17146 762 PPPG--NGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS----------------------------VSNVHLDY 810 (1011)
Q Consensus 762 ~~p~--~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~----------------------------~p~~~Y~f 810 (1011)
.+|. .+.... ..+++.|+| ++.+.+++|++|.|+++.... .|++.|.|
T Consensus 463 ~~p~~~~~~~~~-~~~si~l~W~~P~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 541 (731)
T 2v5y_A 463 GAVPTESIQGST-FEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSF 541 (731)
T ss_dssp CCCCTTTCEEEE-ETTEEEEECCCCSCCSSCCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEEECSCCTTEEEEE
T ss_pred CCCCcceEEeee-cCCeEEEEEcCCCCCCCCccceEEEEEECcCCCccccccCcceEEeecCCcceEEecCCCCCCEEEE
Confidence 2332 333332 467899999 666667799999999875320 78889999
Q ss_pred ---c---CCCCCCCcccccccccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCC
Q psy17146 811 ---A---GHDSETGSESVHTRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQT 878 (1011)
Q Consensus 811 ---A---~G~g~~ss~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~ 878 (1011)
| .|.|.++...++|.+++|..++....... ..+.+...|+|+|| ...||++.+|+|+||+.+..
T Consensus 542 ~V~A~n~~G~g~~s~~~~~T~~~~P~~p~~~~~~~~--~~~~~si~l~W~pp--~~~~g~I~~Y~v~~~~~~~~ 611 (731)
T 2v5y_A 542 TIRASTAKGFGPPATNQFTTKISAPSMPAYELETPL--NQTDNTVTVMLKPA--HSRGAPVSVYQIVVEEERPR 611 (731)
T ss_dssp EEEEEETTEEEEEEEEEEECCCCCCCC-----------------------------------------------
T ss_pred EEEEEeCCccCCCcccEEEcCCCCCCCCCccccccc--ccCCceEEEEEeCC--CCCCCceEEEEEEEEecCCC
Confidence 5 78888887778899999988776543211 00233456699985 67789999999999987754
No 92
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=251.26 Aligned_cols=264 Identities=16% Similarity=0.223 Sum_probs=180.8
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
.+|.|...+.++.+.+|++++|.|.+.+. +.|++++.. +..+.. .....+|.|.+++.+|+|.|
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~---v~W~~~~~~-----------~~~~~~--~~~~~~L~i~~~~~~d~G~Y 66 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS---VEWDGPPSP-----------HWTLYS--DGSSSILSTNNATFQNTGTY 66 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEECSSC---CCBCCCCCS-----------SCEECC--BTTEEEEEESSCCGGGCSCE
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcCCCc---eEEccCCCC-----------ceEEec--cCceEEEEEcccccccCEEE
Confidence 47889999999999999999999999874 999976532 222221 23456899999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC--cEEEEEeCCceeee-ceeEE
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP--AEITWIDGTGTVMS-NVRVT 182 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W~k~~~~l~~-~~~~~ 182 (1011)
+|.+.+... ..+..+.|.|..++.+. +.....+.+.+|+.+.|.|.+ .+ |. +.+.|+++++.... ..++.
T Consensus 67 ~C~~~n~~~----~~~~~~~l~V~~~~~~~-~~~~~~~~v~~g~~v~l~C~~-~~-~~~~~~v~W~~~~~~~~~~~~~~~ 139 (292)
T 4dkd_C 67 RCTEPGDPL----GGSAAIHLYVKDPARPW-NVLAQEVVVFEDQDALLPCLL-TD-PVLEAGVSLVRVRGRPLMRHTNYS 139 (292)
T ss_dssp EECCCC--------CCEEECCEECCSSCCE-EESCSEEEEETTSCEECCEEE-SS-GGGGSSEEEEEGGGCCCCSSCCEE
T ss_pred EEEEccCCC----CcceEEEEEEcCccccc-cccCCeEEEcCCCcEEEeeeC-CC-CCcceeEEEEecCCCccccCCccc
Confidence 999987532 23667888888766433 444557788999999999994 44 44 78999998544433 33332
Q ss_pred EeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEe----CCceEEEecCcceeecCceEEEEE
Q psy17146 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKY----APKVQVSVIGSNRLVEGTDVRLYC 258 (1011)
Q Consensus 183 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~----~P~~~~~~~~~~~v~~g~~v~L~C 258 (1011)
...+ ..|.|.+++.+|+|.|+|.|.|..+.. .+..+.|.|.. +|.+... .....
T Consensus 140 --~~~~-------~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~~~~~p~i~~~-~~~~~----------- 197 (292)
T 4dkd_C 140 --FSPW-------HGFTIHRAKFIQSQDYQCSALMGGRKV-MSISIRLKVQKVIPGPPALTLV-PAELV----------- 197 (292)
T ss_dssp --CCSS-------SCCEETTCCGGGCSEEEEEECSTTSCE-ECCCEEEEEECCCCSSCEEEEE-SSCBC-----------
T ss_pred --ccCC-------ceEEECCCCHHHCeEEEEEEEeCCCce-eEEEEEEEEeCCCCCCCeEEcc-CCcee-----------
Confidence 1112 249999999999999999999876644 34466777765 4444322 22222
Q ss_pred EcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEE
Q psy17146 259 KAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRW 338 (1011)
Q Consensus 259 ~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W 338 (1011)
+.+|+.+.|.|.+.+.|.+..+.|
T Consensus 198 --------------------------------------------------------~~~g~~v~l~C~~~~~~~~~~~~w 221 (292)
T 4dkd_C 198 --------------------------------------------------------RIRGEAAQIVCSASSVDVNFDVFL 221 (292)
T ss_dssp --------------------------------------------------------CCSSSCEEEEEEEEESSSCCEEEC
T ss_pred --------------------------------------------------------EecCCCEEEEEEecCCCCceEEEE
Confidence 334555555555554444345555
Q ss_pred EECCeecCCC----------cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecc
Q psy17146 339 YINDQPVPAA----------ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGP 391 (1011)
Q Consensus 339 ~k~g~~l~~~----------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P 391 (1011)
++++..+... .....|.|.++..+ |+|.|+|.|.|..|..+.++.|.|....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~N~~g~~~~~~~l~V~~~~ 283 (292)
T 4dkd_C 222 QHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQ-HAGNYSCVASNVQGKHSTSMFFRVVESA 283 (292)
T ss_dssp CBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTT-SCEEEEEEEECSSCEEEEEEEECC----
T ss_pred eCCCcccccCccceeccceeeeEEEEEECccChh-cCeEEEEEEecCCCCceeEEEEEEeeCC
Confidence 5555444321 12358999999998 9999999999999999999999887643
No 93
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=258.54 Aligned_cols=291 Identities=18% Similarity=0.205 Sum_probs=187.6
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEc-------C-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEe
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVI-------D-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~-------~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
....|.|...|.++.+.+|++|+|.|.+. + +.+.+.|+|++..+..... ...|+... ..+|.|.
T Consensus 15 ~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~--~~~~~~~~------~~~L~i~ 86 (339)
T 3o4o_C 15 ARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGE--EETRMWAQ------DGALWLL 86 (339)
T ss_dssp ---CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCC--SSSCEEEE------TTEEEES
T ss_pred chhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCcc--ccccEEee------CCeEEEC
Confidence 34568899999999999999999999996 4 5669999999976421111 12344321 1279999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEc----cCCCCCcEEEEEeC
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECIS----ANGKPPAEITWIDG 171 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~----~~g~P~~~i~W~k~ 171 (1011)
+++.+|+|.|+|.+.+.. +..+..+.|.|...+............+.+|+.+.|.|.+ ..+.|.+.+.|+|+
T Consensus 87 ~v~~~D~G~Y~C~~~n~~----g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~ 162 (339)
T 3o4o_C 87 PALQEDSGTYVCTTRNAS----YCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKD 162 (339)
T ss_dssp SBCTTCCEEEECCEEETT----EEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEES
T ss_pred CCCcccCEEEEEEEECCc----ceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecC
Confidence 999999999999999853 3466778888887765332122234467899999999985 57889999999999
Q ss_pred Cceeeec-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc--eeEEEEEEEEEeCCc----eEEEecC
Q psy17146 172 TGTVMSN-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT--YKVARLKLLVKYAPK----VQVSVIG 244 (1011)
Q Consensus 172 ~~~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~--~~s~~v~v~v~~~P~----~~~~~~~ 244 (1011)
+..+... .++.. ..+. +.|.|.+++.+|+|.|+|.|.|..|.. ..+..+.|.|...+. .......
T Consensus 163 g~~~~~~~~~~~~--~~~~------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~ 234 (339)
T 3o4o_C 163 SLLLDKDNEKFLS--VRGT------THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLK 234 (339)
T ss_dssp SCBCCTTCSSEEE--CTTS------SEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSC
T ss_pred CeeCCCCCceeEE--cCCc------ceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCc
Confidence 8877553 22221 1111 379999999999999999999988754 235566677664321 1111122
Q ss_pred cceeecCceEEEEEEc---ccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeC--CcccccCC
Q psy17146 245 SNRLVEGTDVRLYCKA---EANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIG--SNRLVEGT 319 (1011)
Q Consensus 245 ~~~v~~g~~v~L~C~~---~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~--~~~v~~g~ 319 (1011)
...+.+|+.++|.|.+ .+.|..+.+.|++++.++.. . ...+..+.
T Consensus 235 ~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~------------------------------~~~~~~~~~~~ 284 (339)
T 3o4o_C 235 TISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIES------------------------------AYPGGRVTEGP 284 (339)
T ss_dssp CCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSS------------------------------SSCSSSCEECC
T ss_pred eeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeeccc------------------------------ccccccceecc
Confidence 2234445555555555 44443344444444432210 0 00000000
Q ss_pred cEEEEEEeecCCCccEEEEEECCeecCCCcC---ccEEEEeecccccCC-cEEEEEEEcCCccceeeEEEEE
Q psy17146 320 DVRLYCKAEANPSHMKYRWYINDQPVPAAAS---ATELYLTNITRHQHD-SIVKCEVHNDVGKSEDSETLDV 387 (1011)
Q Consensus 320 ~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~---~~~L~I~~~~~~~d~-G~Y~C~a~n~~g~~~~s~~l~V 387 (1011)
...+..... ...|.|.++..+ |+ |.|+|.|.|..|..+..+.+.+
T Consensus 285 ----------------------~~~~~~~g~~~~~~~L~i~~v~~~-d~~G~Y~C~a~N~~G~~~~~~~~~~ 333 (339)
T 3o4o_C 285 ----------------------RQEYSENNENYIEVPLIFDPVTRE-DLHMDFKCVVHNTLSFQTLRTTVKE 333 (339)
T ss_dssp ----------------------CEECCCSSSCEEEECCEECSSCCC-SCCCCCEEEEEETTEEECCBCCCCC
T ss_pred ----------------------eEEecccCceEEEEEEEEEEechh-hcCccEEEEEEeccCceEEEEEhhH
Confidence 000000011 127999999998 87 9999999999998887766554
No 94
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.6e-25 Score=243.02 Aligned_cols=279 Identities=15% Similarity=0.201 Sum_probs=167.9
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
|.|...+.++.+.+|++++|.|.+.+. +.|+|++..+. .+..... ......+|.|.+++.+|+|.|+|
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~~~~---v~W~~~~~~~~--------~~~~~~~-~~~~~~~L~i~~~~~~D~G~Y~C 68 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSGSAP---VVWERMSQEPP--------QEMAKAQ-DGTFSSVLTLTNLTGLDTGEYFC 68 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEESSC---CEEEBTTBCCS--------EEEEECT-TSCEEEEEEECSCCGGGCEEEEE
T ss_pred CeecCCCCeEEEeCCCcEEEEEeccce---EEEECCCCCcc--------cceeccC-CCceeEEEEEccCChhhCEEEEE
Confidence 445666678899999999999999876 99999997662 2332221 12224689999999999999999
Q ss_pred EEEeCCCCCcceeeeEEEEEEEcC-CCCCeeecCC---eeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEE
Q psy17146 108 QVSTGILGEPAIRSRFATLTVLVP-PDPPRIVQGD---TLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 108 ~~~~~~~~~~~~~s~~~~l~V~~~-p~~~~i~~~~---~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~ 183 (1011)
.+.|..+.. ......+.|.+. +..+.+.... .+.+.+|+.+.|.|.+ . .|.+.++|++++........+
T Consensus 69 ~a~n~~g~~---~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~-~-~p~~~v~w~~~~~~~~~~~~~-- 141 (289)
T 3mjg_X 69 THNDSRGLE---TDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV-T-DPQLVVTLHEKKGDVALPVPY-- 141 (289)
T ss_dssp ECCC---------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCB-S-CTTSCEEEEESSCCSCCCCCE--
T ss_pred EEcccCCCC---cCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEc-C-CCCceEEEEeCCCCCccceee--
Confidence 998854221 122344445443 3333433222 2678999999999994 4 677888998865222111111
Q ss_pred eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEe--CCceEEEecCcceeecCceEEEEEEcc
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKY--APKVQVSVIGSNRLVEGTDVRLYCKAE 261 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~--~P~~~~~~~~~~~v~~g~~v~L~C~~~ 261 (1011)
. ... .+. ..+|+|.|+|.|.|..+.. .+..+.|.+.. +|.+.+... ...+.+|+.++|.|.+.
T Consensus 142 --~-~~~------~~~----~~~d~G~Y~C~a~n~~~~~-~s~~~~l~v~~~~~p~i~~~~~-~~~v~~G~~v~L~C~~~ 206 (289)
T 3mjg_X 142 --D-HQR------GFS----GIFEDRSYICKTTIGDREV-DSDAYYVYRLQVSSINVSVNAV-QTVVRQGENITLMCIVI 206 (289)
T ss_dssp --E-TTT------EEE----ECCCSSEEEEEEEETTEEE-ECCCEEEEECCCCCCCCEEEES-CSEEETTSCEEEEEEEE
T ss_pred --c-CCc------Cee----eeccCcEEEEEEEeCCcee-eeeeEEEEecCCCCCCcEEeCC-cceeEcCCCEEEEEEEC
Confidence 1 111 111 3679999999999876544 23334555544 444443322 23455555555555555
Q ss_pred cCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEEC
Q psy17146 262 ANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYIN 341 (1011)
Q Consensus 262 ~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k~ 341 (1011)
+.| .+.+.|+++++...... . .......+
T Consensus 207 g~p-~p~v~W~~~~~~~~~~~-------------------------------------------------~-~~~~~~~~ 235 (289)
T 3mjg_X 207 GNE-VVNFEWTYPRKESGRLV-------------------------------------------------E-PVTDFLLD 235 (289)
T ss_dssp SCS-SBEEEEECTTSSSSCCC-------------------------------------------------C-CEEEESCT
T ss_pred CCC-CcceEEEcCCccCCCcc-------------------------------------------------c-ccccccCC
Confidence 433 24455554433211000 0 00000000
Q ss_pred CeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecceEeeC
Q psy17146 342 DQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPRFRAR 396 (1011)
Q Consensus 342 g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~ 396 (1011)
+ .......|.|.++..+ |+|.|+|.|.|..|..+.++.|.|...|.+...
T Consensus 236 ~----~~~~~~~L~I~~v~~~-D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~~~ 285 (289)
T 3mjg_X 236 M----PYHIRSILHIPSAELE-DSGTYTCNVTESVNDHQDEKAINITVVESGHHH 285 (289)
T ss_dssp T----TTEEEEEEEESSCCSS-CCEEEEEEEEETTTTEEEEEEEEEEEEC-----
T ss_pred c----ceEEEEEEEEcccChh-hCcEEEEEeecCCCCceeEEEEEEEEEecCccc
Confidence 0 0124478999999998 999999999999999999999999988765543
No 95
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.93 E-value=1.9e-24 Score=236.49 Aligned_cols=276 Identities=20% Similarity=0.205 Sum_probs=198.4
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+... ..++.+... ..+..+|.|.+++.+|+|.
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~-----~~~~~~~~~-~~~~~~L~i~~v~~~d~G~ 76 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD-----GLKYRIQEF-KGGYHQLIIASVTDDDATV 76 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCC-----SSSEEEEEE-TTTEEEEEESSCCGGGCSE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccC-----CCeEEEEEC-CCCEEEEEEccCChhhCeE
Confidence 4789999999999999999999999987 56799999999876421 235554432 2456789999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCC--C-eeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeE
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDP--P-RIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRV 181 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~--~-~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~ 181 (1011)
|+|.+.|.. +..+..+.|.|..++.. + .+.....+.+.+|+.+.|.|. +.|.|.+.+.|+|++..+..+.++
T Consensus 77 Y~C~a~n~~----g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~i~W~~~~~~~~~~~~~ 151 (305)
T 2nzi_A 77 YQVRATNQG----GSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIP-FSGKPDPVITWQKGQDLIDNNGHY 151 (305)
T ss_dssp EEEEEEETT----EEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEE-EEEESCCEEEEEESSSBCCSSSSC
T ss_pred EEEEEEcCC----CCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEE-ECCCCCCEEEEEECCEECCCCCcE
Confidence 999999863 34567778888754421 1 112224567889999999999 679999999999998887665444
Q ss_pred EEeeecCCceEEEEEEEEEee-ccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEc
Q psy17146 182 TEEASVDGRRTTVKSTLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKA 260 (1011)
Q Consensus 182 ~~~~~~~~~~~~~~~~L~I~~-~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~ 260 (1011)
......+ ...|.|.+ +..+|.|.|+|.|.|..|.. +..+.|.|...|....... .....+..+.|.|..
T Consensus 152 ~~~~~~~------~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~--~~~~~l~v~~~P~~p~~~~--~~~~~~~~v~l~w~~ 221 (305)
T 2nzi_A 152 QVIVTRS------FTSLVFPNGVERKDAGFYVVCAKNRFGID--QKTVELDVADVPDPPRGVK--VSDVSRDSVNLTWTE 221 (305)
T ss_dssp EEEECSS------EEEEEETTCCCSTTCEEEEEEEEETTEEE--EEEEEEEEEBCCCCCEEEE--EESCCSSCEEEEEEC
T ss_pred EEEEcCC------ceEEEEecCCccCccEEEEEEEEeCCCce--eeEEEEEEecCCCCCCCce--eeeccCCEEEEEEcC
Confidence 3332222 35899999 99999999999999999876 4556666666554322111 001134445554443
Q ss_pred ccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcEEEEEEEEEeeCCcccccCCcEEEEEEeecCCCccEEEEEE
Q psy17146 261 EANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYI 340 (1011)
Q Consensus 261 ~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~~~c~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~~i~W~k 340 (1011)
.. ..|....+.|.+...+.+ ...|.+
T Consensus 222 p~-----------------------------------------------------~~g~~~i~~y~v~~~~~~-~~~w~~ 247 (305)
T 2nzi_A 222 PA-----------------------------------------------------SDGGSKITNYIVEKCATT-AERWLR 247 (305)
T ss_dssp CS-----------------------------------------------------CCSBSCEEEEEEEEEETT-SCCEEE
T ss_pred Cc-----------------------------------------------------cCCCCceeEEEEEEecCC-CCccEE
Confidence 21 123344566777666654 678988
Q ss_pred CCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccceee
Q psy17146 341 NDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDS 382 (1011)
Q Consensus 341 ~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s 382 (1011)
.+... ...|.|.++... +.|.|+|.|.|..|....+
T Consensus 248 ~~~~~-----~~~~~i~~l~~~-~~y~~~~~A~N~~G~~~~S 283 (305)
T 2nzi_A 248 VGQAR-----ETRYTVINLFGK-TSYQFRVIAENKFGLSKPS 283 (305)
T ss_dssp EEEES-----SSEEEECSCCSS-CEEEEEEEEEETTEECCCC
T ss_pred Ccccc-----CceEEecCCCCC-CeEEEEEEEEeCCcccCCc
Confidence 76543 568999999987 9999999999999976544
No 96
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.93 E-value=7.5e-25 Score=269.70 Aligned_cols=360 Identities=13% Similarity=0.065 Sum_probs=246.1
Q ss_pred CCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEee-ccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccC
Q psy17146 404 RGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMT-SDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHR 482 (1011)
Q Consensus 404 ~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v-~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~ 482 (1011)
.++++.|.|.+.|.|.|.+.|.|+|.....-....+.|..+ ..+..+.|.|.+.|..+......+.+...
T Consensus 90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~--------- 160 (731)
T 2v5y_A 90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGH--------- 160 (731)
T ss_dssp CSEEEEEEEEETTCCCCSEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESS---------
T ss_pred CcceEEEEEecCCCCccceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeec---------
Confidence 34589999999999999999999997643222333445433 22334788887765322111111111000
Q ss_pred cccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcE
Q psy17146 483 TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGV 562 (1011)
Q Consensus 483 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~ 562 (1011)
.+..+|.|. .+.++.+.+|+++
T Consensus 161 ---------------------------------------------------------~~~~~p~~~-~~~~~~v~~G~~v 182 (731)
T 2v5y_A 161 ---------------------------------------------------------PCTRTPHFL-RIQNVEVNAGQFA 182 (731)
T ss_dssp ---------------------------------------------------------CCSSSCEEC-CCCCEEEETTSCE
T ss_pred ---------------------------------------------------------ccccccccc-cccceEEeCCCcE
Confidence 011356666 5668999999999
Q ss_pred EEEEEEecCCCCeEE-EE--ecCCceeec------C---CCcEEEeecCCCCCEEEEEEEEecCCCc-eeeEEEEEEcCC
Q psy17146 563 NLLCDVDGNPAPEIT-WI--HEDSDKVVG------N---SPNLTLLMTSDDLAGRYYCKASVMGFPE-VGAEATVYLKGR 629 (1011)
Q Consensus 563 ~l~C~~~g~p~p~v~-W~--k~~~~~~~~------~---~~~L~I~~v~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~ 629 (1011)
+|.|.+.|.|.|.+. |+ +++..+... . .++|.|.++..+|+|.|+|.|.| ..|. .+..+.|.|..+
T Consensus 183 ~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n-~~G~~~s~~~~l~V~~~ 261 (731)
T 2v5y_A 183 TFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRT-EGGVGISNYAELVVKEP 261 (731)
T ss_dssp EEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEE-TTEEEECCCEEEEEECC
T ss_pred EEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEEC-CCCCcceeeEEEEEecC
Confidence 999999999999988 88 666554221 1 36899999999999999999999 4565 777888999999
Q ss_pred CeeecCCceeeecCCcEEEEEEEEecC--CCC---eEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 630 PTIISHRTQFGIPGDTARVECSAFSIP--PPE---KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 630 P~i~~~~~~~v~~G~~v~L~C~~~g~p--~p~---~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
|.+..+..........+.|.|.....+ .++ .|.|...+.. ...+.. .....+.|.++.+.+.+
T Consensus 262 P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~-------~~~~~~-----~~~~~~~i~~L~p~t~Y 329 (731)
T 2v5y_A 262 PVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGS-------WNDRQP-----VDSTSYKIGHLDPDTEY 329 (731)
T ss_dssp CCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSS-------CEEEEE-----CCSSEEEECSCCTTCEE
T ss_pred CCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCC-------ceEEec-----cCcceEEEeCCCCCCEE
Confidence 887655555445567889999764321 221 4566554211 111111 11368999999999999
Q ss_pred EEEEEEE--cCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCC-CCCCCcccccccccccccc
Q psy17146 705 VYNCSVS--NPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKP-PPGNGIEHHVTADGEKNQC 781 (1011)
Q Consensus 705 ~Y~C~a~--N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~p~~~~~~~~~~~s~~~~W 781 (1011)
.|+|.|. |..|....+..+.+... ...++ +|.++.+..++.+++.|+|
T Consensus 330 ~~~V~A~~~N~~G~s~~S~~~~~~t~-----------------------------~~~p~~~P~~~~~~~~~~~sv~l~W 380 (731)
T 2v5y_A 330 EISVLLTRPGEGGTGSPGPALRTRTK-----------------------------CADPMRGPRKLEVVEVKSRQITIRW 380 (731)
T ss_dssp EEEEEEECSSTTCSCCBCCCEEEECC-----------------------------CCCCSCCCEEEEEEEECSSCEEEEE
T ss_pred EEEEEEEecCCCccccCCCcEEeeec-----------------------------CCCCCCCCceeEEEeccCCeEEEEE
Confidence 9999999 99997653332322110 12333 7888989999999999999
Q ss_pred -cCCC--CCCCCcCcceeeecCc------------c-------------cccccccc---c---CCCCCCCccccccccc
Q psy17146 782 -KESD--NSSNISDIKLEFRTGS------------S-------------VSNVHLDY---A---GHDSETGSESVHTRIG 827 (1011)
Q Consensus 782 -~~~d--~~s~I~~Y~ve~~~~~------------~-------------~p~~~Y~f---A---~G~g~~ss~~~~t~~~ 827 (1011)
++.+ .+.++.+|.|+|+... . .|++.|.| | .|.|+.....++|.++
T Consensus 381 ~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~S~~~~~~T~~~ 460 (731)
T 2v5y_A 381 EPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDED 460 (731)
T ss_dssp ECCCHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEECCCEEEECCCC
T ss_pred ECCCcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCCCceEEEEccCC
Confidence 4433 3568899999986432 0 78899999 5 7777423667889999
Q ss_pred ccccccc-cCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCC
Q psy17146 828 VPLAGPV-PMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQT 878 (1011)
Q Consensus 828 ~P~~~P~-~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~ 878 (1011)
+|..+|. ++.... ..+...|+|+|| ...||.+.||+|+|++.+..
T Consensus 461 ~P~~p~~~~~~~~~----~~~si~l~W~~P--~~~~g~i~~Y~V~~~~~~~~ 506 (731)
T 2v5y_A 461 LPGAVPTESIQGST----FEEKIFLQWREP--TQTYGVITLYEITYKAVSSF 506 (731)
T ss_dssp CCCCCCTTTCEEEE----ETTEEEEECCCC--SCCSSCCCEEEEEEEEEEEC
T ss_pred CCCCCCcceEEeee----cCCeEEEEEcCC--CCCCCCccceEEEEEECcCC
Confidence 9998874 443322 233446699995 45789999999999987753
No 97
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.92 E-value=4.8e-24 Score=237.52 Aligned_cols=189 Identities=15% Similarity=0.237 Sum_probs=130.1
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecCC--c---------ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALGP--H---------RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~~--~---------~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
..|..+.+.+|++|+|.|.+.+. .+.+.|+|++ ..+.. . ......+|+.+..+...+.++|+|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (344)
T 1za6_B 5 VQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELS 84 (344)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred eCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEEC
Confidence 35678899999999999999874 4689999973 22210 0 0011246888877655677899999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCC
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKPP-AEITWIDGT 172 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~ 172 (1011)
+++.+|+|.|+|.+.+.. ......+.|+|.. .+.+|.+. ..+...+.+|+.+.|.|.+.+..|. +.++|+|++
T Consensus 85 ~v~~~D~G~Y~C~~~n~~----~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g 160 (344)
T 1za6_B 85 SLRSEDTAVYFCTRSLNM----AYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA 160 (344)
T ss_dssp SCCGGGCEEEEEEETTTT----CEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTT
T ss_pred CCCcccCEEEEEEEecCc----ceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCC
Confidence 999999999999998732 2334457888873 34455544 2334456789999999995444475 799999998
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
..+.... .......++ .+...+.|.|.++..+| |.|+|.|.|..+.......
T Consensus 161 ~~~~~~~-~~~~~~~~~-~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~ 212 (344)
T 1za6_B 161 LTSGVHT-FPAVLQSSG-LYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK 212 (344)
T ss_dssp BCTTEEE-CCCEECTTS-CEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEE
T ss_pred ccCceeE-CCCeECCCC-CEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEe
Confidence 7642110 000111223 44555789999998888 9999999999886533333
No 98
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.91 E-value=7.3e-24 Score=233.82 Aligned_cols=239 Identities=15% Similarity=0.166 Sum_probs=135.2
Q ss_pred eccceeecCCceeEEec--CcEEEEEEEcC--C-CCeeEEeeCCeecCCcccCCCCcceEEeecCC--CceeEEEEeecc
Q psy17146 26 REQKFAMEPQDQTAVVG--SRVTLPCRVID--K-TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDE--EGDYSLEIYPVM 98 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G--~~v~L~C~v~~--~-~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~--~~~~~L~I~~v~ 98 (1011)
.+|.+.+.+.......| ++++|.|.+.+ + .+.|.|+|+|..+..... .......+. .....|.|.+++
T Consensus 6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~-----~~~~~~~~g~~~~~s~l~i~~~~ 80 (323)
T 2wqr_A 6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLS-----TASTTQEGELASTQSELTLSQKH 80 (323)
T ss_dssp CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGE-----EEEEEEETTEEEEEEEEEEEHHH
T ss_pred CCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEccccee-----cCCcCccCCcEEEEEEEEEcHHH
Confidence 35666665544333445 69999999987 2 358999999988753210 001111110 012368899999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCee--ecCCeeeecCCCcEEEEEEccCCCCCc---EEEEEeCCc
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRI--VQGDTLYTTEDREIELECISANGKPPA---EITWIDGTG 173 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i--~~~~~~~v~eg~~v~L~C~~~~g~P~~---~i~W~k~~~ 173 (1011)
.+|+|.|+|+|.|... .....+.+.+......+.+ ..+....+.+|+.+.|.|.+.+..|.+ .|+|+|+++
T Consensus 81 ~~d~g~Y~C~a~n~~~----~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g 156 (323)
T 2wqr_A 81 WLSDRTYTCQVTYQGH----TFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASG 156 (323)
T ss_dssp HHTTCCEEEEEEETTE----EEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTC
T ss_pred cCCCCcEEEEEEeCCC----CcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCC
Confidence 9999999999998531 1111111111111112222 233345578899999999954445666 999999765
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEE----EEeCCceEEEecCcceee
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLL----VKYAPKVQVSVIGSNRLV 249 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~----v~~~P~~~~~~~~~~~v~ 249 (1011)
.+............++ .+...+.|.|.+++.+|+|.|+|.|.|..+... ..+.|. +..+|.+.+.......+.
T Consensus 157 ~~~~~~~~~~~~~~~g-~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~--~~~~v~~~~~~~~~P~v~~~~~~~~~~~ 233 (323)
T 2wqr_A 157 KPVNHSTRKEEKQRNG-TLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRA--LMRSTTKTSGPRAAPEVYAFATPEWPGS 233 (323)
T ss_dssp CCCCCCCCEEEECTTS-CEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC--EEEEECCCCSCCBCCEEEEEECCCCTTC
T ss_pred cccccccCCCccCCCC-CEEEEEEEEECHHHccCCCCEEEEEECCCCCCC--eeeEEEccCCCCCCCEEEEeCCChHHhc
Confidence 5443221111112233 334567899999999999999999999865432 223332 224555544333222121
Q ss_pred cCceEEEEEEcccCCC-ccEEEEEeCCcc
Q psy17146 250 EGTDVRLYCKAEANPS-HMKYRWYINDQP 277 (1011)
Q Consensus 250 ~g~~v~L~C~~~~~~~-~~~i~W~~~~~~ 277 (1011)
|+.++|.|.+.+.++ ...+.|++||++
T Consensus 234 -g~~~~l~C~~~g~~p~~~~v~W~k~g~~ 261 (323)
T 2wqr_A 234 -RDKRTLACLIQNFMPEDISVQWLHNEVQ 261 (323)
T ss_dssp -TTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred -CCcEEEEEEeeeeeCCCcEEEEEECCEE
Confidence 555555555554322 234445444443
No 99
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.90 E-value=8.2e-23 Score=207.62 Aligned_cols=176 Identities=19% Similarity=0.366 Sum_probs=150.5
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec---------CC--CcEEEeecCCCCCEEEEEEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG---------NS--PNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~---------~~--~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
.+|.|...|.+..+.+|+.++|.|.+.+.|.+.+.|+|++..+... .+ ..|.|.+++.+|+|.|+|.|.
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence 4788999999999999999999999999999999999998544321 12 289999999999999999999
Q ss_pred ecCCCceeeEEEEEEcCCCeeecC------CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc
Q psy17146 612 VMGFPEVGAEATVYLKGRPTIISH------RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~~~P~i~~~------~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
| ..+..+..+.|.|..+|.+..+ ....+.+|+.++|.|.+.|.|.| .+.|+++|..+. ...++.+..
T Consensus 83 n-~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~--~~~~~~~~~--- 155 (197)
T 2j8h_A 83 N-QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP-VITWQKGQDLID--NNGHYQVIV--- 155 (197)
T ss_dssp E-TTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCC-EEEEEESSCEEC--SSSSCEEEE---
T ss_pred E-CCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCC-cEEEEECCEEee--cCCCEEEEE---
Confidence 9 5677888999999888877633 34567889999999999999999 999999999987 445666544
Q ss_pred CccceeEEEEcC-CCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 686 KEGIKSTLIIRE-SRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 686 ~~~~~~~L~I~~-~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.+..+.|.|.+ +..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 156 -~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 156 -TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp -CSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -cCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 23467999999 99999999999999999999999999874
No 100
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.90 E-value=6.3e-23 Score=207.86 Aligned_cols=176 Identities=26% Similarity=0.402 Sum_probs=149.8
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec-----------CCCcEEEeecCCCCCEEEEEEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG-----------NSPNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~-----------~~~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
.+|.|...|.+..+.+|+.++|.|.+.+.|.+.+.|+|++..+... ....|.|.+++.+|+|.|+|.|.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 83 (194)
T 2a38_A 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT 83 (194)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence 5788999999999999999999999999999999999998654322 23589999999999999999999
Q ss_pred ecCCCceeeEEEEEEc---CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCc
Q psy17146 612 VMGFPEVGAEATVYLK---GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~---~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~ 687 (1011)
| ..+.....+.|.|. .+|.+. .+....+..|+.++|.|.+.|.|.| .+.|+++|..+. ...++.+.. +
T Consensus 84 n-~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~~~--~~~~~~~~~----~ 155 (194)
T 2a38_A 84 N-GSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTP-VVKFYRDGAEIQ--SSLDFQISQ----E 155 (194)
T ss_dssp E-TTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCC-EEEEEETTEECC--CSSSEEEEE----E
T ss_pred c-CCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCC-eEEEEECCEECC--CCCcEEEEE----c
Confidence 9 56677777888887 566666 4456778999999999999999999 899999999987 345566544 3
Q ss_pred cceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 688 GIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 688 ~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+....|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 156 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 156 GDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp TTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 345689999999999999999999999999999998873
No 101
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.89 E-value=2.8e-22 Score=203.54 Aligned_cols=179 Identities=21% Similarity=0.408 Sum_probs=151.6
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec------CC---CcEEEeecCCCCCEEEEEEEE
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG------NS---PNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~------~~---~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
+..+|.|...+.++.+.+|+.++|.|.+.+.|.+.+.|+|++..+... .. .+|.|.++..+|+|.|+|.|.
T Consensus 4 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 83 (197)
T 3lcy_A 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT 83 (197)
T ss_dssp CCEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEE
T ss_pred cCCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEE
Confidence 346789999999999999999999999999999999999998554221 12 279999999999999999999
Q ss_pred ecCCCceeeEEEEEEcCCCeeecC----CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCc
Q psy17146 612 VMGFPEVGAEATVYLKGRPTIISH----RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKE 687 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~~~P~i~~~----~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~ 687 (1011)
| ..+.....+.|.|..+|.+... ....+..|+.+.|.|.+.|.|.| .+.|+++|..+. ...++.+.. .
T Consensus 84 n-~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~~--~~~~~~~~~----~ 155 (197)
T 3lcy_A 84 N-EVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVP-AMTWFHGQKLLQ--NSENITIEN----T 155 (197)
T ss_dssp C-SSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCC-EEEEEETTEECC--CCSSEEEEE----C
T ss_pred C-CCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCC-eeEEeECCEECC--CCCceEEEE----c
Confidence 8 5677888889999888877632 45568899999999999999999 999999999987 445565544 2
Q ss_pred cceeEEEEcCCCC-CCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 688 GIKSTLIIRESRH-DHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 688 ~~~~~L~I~~~~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+..+.|.|.++.. +|+|.|+|.|.|..|..+..+.|.|.+
T Consensus 156 ~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 156 EHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp SSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred CCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 3357999999995 899999999999999999999998854
No 102
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.89 E-value=5.2e-24 Score=235.03 Aligned_cols=240 Identities=16% Similarity=0.229 Sum_probs=156.5
Q ss_pred CcEEEEeecCCC-C-CCceEEEeCCCceeec--------cC------CcEEEEeeccCCCeEEEEEEEEcCCcceeeEEE
Q psy17146 406 AGVNLLCDVDGN-P-APEITWIHEDSDKVVG--------NS------PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 469 (1011)
Q Consensus 406 ~~v~l~C~~~g~-p-~p~v~W~k~~~~~~~~--------~~------~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 469 (1011)
+.+.|.|.+.|. | .+.|+|+|++..+... .. ..|.|.....+|+|.|+|.|.|..+. ....+.
T Consensus 25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~~ 103 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHT-FEDSTK 103 (323)
T ss_dssp SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEE-EEEEEC
T ss_pred CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCC-cceeee
Confidence 699999999875 4 4699999998543211 11 23566666777999999999985421 111110
Q ss_pred EEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecc-eee
Q psy17146 470 VYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGP-RFR 548 (1011)
Q Consensus 470 v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P-~~~ 548 (1011)
+.+. .+...| .+.
T Consensus 104 ~~~~------------------------------------------------------------------~~~~~p~v~~ 117 (323)
T 2wqr_A 104 KCAD------------------------------------------------------------------SNPRGVSAYL 117 (323)
T ss_dssp CCCC------------------------------------------------------------------SSGGGCEEEE
T ss_pred cCCC------------------------------------------------------------------CCCCCCEEEE
Confidence 0000 000112 223
Q ss_pred cCCceEEEcCCCcEEEEEEEecC-CCC---eEEEEecCCceee--------cC------CCcEEEeecCCCCCEEEEEEE
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGN-PAP---EITWIHEDSDKVV--------GN------SPNLTLLMTSDDLAGRYYCKA 610 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~-p~p---~v~W~k~~~~~~~--------~~------~~~L~I~~v~~~d~G~Y~C~a 610 (1011)
..|....+.+|+.++|.|.+.|. |.+ .|.|+|++..... .. .+.|+|.++..+|+|.|+|.|
T Consensus 118 ~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a 197 (323)
T 2wqr_A 118 SRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRV 197 (323)
T ss_dssp CCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEE
T ss_pred cCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEE
Confidence 34555567899999999999986 556 8999997633211 11 236999999999999999999
Q ss_pred EecCCCceeeEEEEE----EcCCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEe---
Q psy17146 611 SVMGFPEVGAEATVY----LKGRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVL--- 681 (1011)
Q Consensus 611 ~n~~~~~~s~~~~l~----V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~--- 681 (1011)
.|.. ........+. +..+|.+.. +.......|+.++|.|.+.|. |.+..|+|+|||..+... .+...
T Consensus 198 ~n~~-~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~---~~~~~~~~ 273 (323)
T 2wqr_A 198 THPH-LPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDA---RHSTTQPR 273 (323)
T ss_dssp ECTT-SSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGG---GEEECCCE
T ss_pred ECCC-CCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCC---ceeecCcc
Confidence 9943 2222333332 235777652 222122239999999999995 444489999999998642 11111
Q ss_pred -cCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 682 -EDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 682 -~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
.........+.|.|..+..+|.|.|+|.|.|..+.
T Consensus 274 ~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 274 KTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp ECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred cCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 00000113468999999999999999999999987
No 103
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.89 E-value=5.9e-22 Score=199.99 Aligned_cols=176 Identities=21% Similarity=0.348 Sum_probs=146.5
Q ss_pred ecceeecCCceEEEcC-CCcEEEEEEEecCCC--CeEEEEecCCceee----cCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 543 YGPRFRARPYSVQVDR-GAGVNLLCDVDGNPA--PEITWIHEDSDKVV----GNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~-G~~~~l~C~~~g~p~--p~v~W~k~~~~~~~----~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
.+|.|...+ ...+.+ |+.++|.|.+.+.|. +.+.|+|++..+.. ..++.|.|.+++.+|+|.|+|.|.| .
T Consensus 2 ~~P~i~~~~-~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n-~- 78 (190)
T 2wv3_A 2 NEPRIVTSE-EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHF-V- 78 (190)
T ss_dssp -CCEEEECC-CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEE-T-
T ss_pred CCCcccccc-eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEe-C-
Confidence 367777644 455556 999999999999987 79999999855432 2446899999999999999999999 4
Q ss_pred CceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEE--CCeEeccc-CCCCeEEecCCcCcccee
Q psy17146 616 PEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSY--RGEEIGVG-SSDDYSVLEDPLKEGIKS 691 (1011)
Q Consensus 616 ~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~--~g~~l~~~-~~~~~~~~~~~~~~~~~~ 691 (1011)
+..+..+.|.|..+|.+. .+....+.+|+.++|.|.+.|.|.| .+.|++ +|..+... ...++.+.. .+..+
T Consensus 79 ~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~g~~~~~~~~~~~~~~~~----~~~~~ 153 (190)
T 2wv3_A 79 SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHP-EWMWRKKENGVFEEISNSSGRFFIIN----KENYT 153 (190)
T ss_dssp TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCC-EEEEEEEETTEEEECCCTTSCEEEEE----CSSEE
T ss_pred CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCC-ceEEEEcCCCceeeeecCCCeEEEec----CCCee
Confidence 788899999999999988 4556779999999999999999999 999999 88887542 345666654 33456
Q ss_pred EEEEcCCC-CCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 692 TLIIRESR-HDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 692 ~L~I~~~~-~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.|.|.++. .+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 154 ~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 154 ELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp EEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 89999999 799999999999999999999988874
No 104
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.89 E-value=8.8e-23 Score=227.28 Aligned_cols=253 Identities=17% Similarity=0.249 Sum_probs=162.3
Q ss_pred CCceEecCCCcEEEEeecCCCC--CCceEEEeCC--Cce----------------------e-e-----ccCCcEEEEee
Q psy17146 397 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHED--SDK----------------------V-V-----GNSPNLTLLMT 444 (1011)
Q Consensus 397 p~~~~v~~G~~v~l~C~~~g~p--~p~v~W~k~~--~~~----------------------~-~-----~~~~~L~I~~v 444 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|++ ... . . .....|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (344)
T 1za6_B 7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL 86 (344)
T ss_dssp CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence 4567899999999999998763 6799999973 211 1 0 01236999999
Q ss_pred ccCCCeEEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCce
Q psy17146 445 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY 524 (1011)
Q Consensus 445 ~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y 524 (1011)
+.+|+|.|+|.|.|.. ......+.|.|...+.
T Consensus 87 ~~~D~G~Y~C~~~n~~-~~~~~~~~l~V~~~~~----------------------------------------------- 118 (344)
T 1za6_B 87 RSEDTAVYFCTRSLNM-AYWGQGTLVTVSSAST----------------------------------------------- 118 (344)
T ss_dssp CGGGCEEEEEEETTTT-CEECCCEEEEECSSCC-----------------------------------------------
T ss_pred CcccCEEEEEEEecCc-ceecCcEEEEEecCCC-----------------------------------------------
Confidence 9999999999998732 1222233333321000
Q ss_pred EEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecC-CC-CeEEEEecCCcee-------ecCC-----
Q psy17146 525 SVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGN-PA-PEITWIHEDSDKV-------VGNS----- 590 (1011)
Q Consensus 525 ~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~-p~-p~v~W~k~~~~~~-------~~~~----- 590 (1011)
.+|.+...+....+.+|+.++|.|.+.|. |. +.+.|+|++..+. ...+
T Consensus 119 ------------------~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~ 180 (344)
T 1za6_B 119 ------------------KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL 180 (344)
T ss_dssp ------------------BCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEE
T ss_pred ------------------CCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEE
Confidence 12333322222335789999999999987 64 6999999986421 1122
Q ss_pred -CcEEEeecCCCCCEEEEEEEEecCCCce--eeEEEE----------------------EEcCCCeeec-CCceeeecCC
Q psy17146 591 -PNLTLLMTSDDLAGRYYCKASVMGFPEV--GAEATV----------------------YLKGRPTIIS-HRTQFGIPGD 644 (1011)
Q Consensus 591 -~~L~I~~v~~~d~G~Y~C~a~n~~~~~~--s~~~~l----------------------~V~~~P~i~~-~~~~~v~~G~ 644 (1011)
+.|+|.++..+| |.|+|.|.|. .+.. ...+.+ .+..+|.+.. +.......|+
T Consensus 181 ~s~L~i~~~~~~d-G~Y~C~a~n~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~ 258 (344)
T 1za6_B 181 SSVVTVPSSSLGT-QTYICNVNHK-PSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKN 258 (344)
T ss_dssp EEEEEEETTHHHH-BCEEEEEEEG-GGTEEEEEEECCCCC--------------------CCBCCEEEEECCCGGGGGSS
T ss_pred EEEEEEcHHHcCC-CcEEEEEEeC-CCCccceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChHhccCC
Confidence 368898888888 9999999994 3332 222221 2245677652 2222233577
Q ss_pred cEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 645 TARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 645 ~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
.++|.|.+.|. |+...|+|+|||..+......++....+ ......+.|.|.....+|.|.|+|.|.|......
T Consensus 259 ~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~-g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~~~ 332 (344)
T 1za6_B 259 QVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD-GSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNH 332 (344)
T ss_dssp SEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTT-SCEEEEEEEEECHHHHHTTCEEEEEEECTTSTTS
T ss_pred cEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCC-CcEEEEEEEEEChHHccCCCeEEEEEEcCCCCCC
Confidence 79999999996 4334899999999876322111111111 0001245677877777889999999999876543
No 105
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.89 E-value=5.5e-22 Score=204.13 Aligned_cols=174 Identities=24% Similarity=0.413 Sum_probs=145.9
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee---------cCC--CcEEEeecCC-CCCEEEEEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV---------GNS--PNLTLLMTSD-DLAGRYYCKA 610 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~---------~~~--~~L~I~~v~~-~d~G~Y~C~a 610 (1011)
.+|.|...|.++.+.+|+.++|.|.+.|.|.+.+.|+|++..+.. ..+ ..|.|.++.. +|+|.|+|.|
T Consensus 5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~ 84 (212)
T 2yd1_A 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA 84 (212)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence 578999999999999999999999999999999999999855421 112 5899999999 9999999999
Q ss_pred EecCCCc-eeeEEEEEEcCC-------Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEe
Q psy17146 611 SVMGFPE-VGAEATVYLKGR-------PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVL 681 (1011)
Q Consensus 611 ~n~~~~~-~s~~~~l~V~~~-------P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~ 681 (1011)
.| ..+. .+..+.|.|..+ |.+. .+....+..|+.++|.|.+.|.|.| .+.|+++|..+.. ...++.+.
T Consensus 85 ~n-~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~-~~~~~~~~ 161 (212)
T 2yd1_A 85 EN-GVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTP-NIYWIKNQTKVDM-SNPRYSLK 161 (212)
T ss_dssp EC-SSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCC-EEEEEETTEECCT-TSTTEEEE
T ss_pred Ee-CCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCC-eEEEEECCeEccc-CCCeEEcc
Confidence 99 4555 788889999765 6666 3456678899999999999999999 8999999999874 23445443
Q ss_pred cCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEE-EEEEecC
Q psy17146 682 EDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVE-IMLKPQK 727 (1011)
Q Consensus 682 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~-~~l~V~~ 727 (1011)
. +.|.|.++..+|+|.|+|.|.|..|..... +.|.|+.
T Consensus 162 ~--------~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~ 200 (212)
T 2yd1_A 162 D--------GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKV 200 (212)
T ss_dssp T--------TEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred C--------CeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEe
Confidence 2 489999999999999999999999988654 7888854
No 106
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.89 E-value=8.3e-22 Score=202.78 Aligned_cols=179 Identities=22% Similarity=0.331 Sum_probs=143.4
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee----------cCCCcEEEeec-CCCCCEEEEEE
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------GNSPNLTLLMT-SDDLAGRYYCK 609 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~----------~~~~~L~I~~v-~~~d~G~Y~C~ 609 (1011)
+..+|.|...|.+..+.+|+.+.|.|.+.|.|.+.+.|+|++..+.. .....|.|.++ ..+|+|.|+|.
T Consensus 3 ~~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~ 82 (212)
T 2yd6_A 3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV 82 (212)
T ss_dssp -CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEE
T ss_pred CCCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEE
Confidence 34689999999999999999999999999999999999999855422 13457999999 59999999999
Q ss_pred EEecCCCceeeEEEEEEcCC-------Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccC-CCCeEE
Q psy17146 610 ASVMGFPEVGAEATVYLKGR-------PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGS-SDDYSV 680 (1011)
Q Consensus 610 a~n~~~~~~s~~~~l~V~~~-------P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~-~~~~~~ 680 (1011)
|.| ..+..+..+.|.|..+ |.+. .+....+..|+.++|.|.+.|.|.| .+.|+++|..+.... ..++..
T Consensus 83 a~n-~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~v~W~~~g~~l~~~~~~~~~~~ 160 (212)
T 2yd6_A 83 ASN-NVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP-EITWFKDFLPVDTSNNNGRIKQ 160 (212)
T ss_dssp EEE-TTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCC-EEEEEETTEEC------CCEEE
T ss_pred EEc-CCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCC-eEEEEECCccccCcCCCceEEE
Confidence 999 5677788888988654 5665 3456678899999999999999999 999999999987532 345544
Q ss_pred ecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE-EEEEEEe
Q psy17146 681 LEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS-VEIMLKP 725 (1011)
Q Consensus 681 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~V 725 (1011)
.. .+..+.|.|.++..+|+|.|+|.|.|.+|... ..+.|.|
T Consensus 161 ~~----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~ 202 (212)
T 2yd6_A 161 LR----SESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202 (212)
T ss_dssp EE----ETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred Ee----cCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEE
Confidence 33 23368999999999999999999999999653 3445544
No 107
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.88 E-value=9.9e-22 Score=198.55 Aligned_cols=177 Identities=21% Similarity=0.382 Sum_probs=147.2
Q ss_pred cceeecCCc--eEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 544 GPRFRARPY--SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 544 ~P~~~~~p~--~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
+|.|...+. ++.+.+|+.++|.|.+.+.|.+.+.|+|++..+. ......|.|.+++.+|+|.|+|.|.| .
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~ 80 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATN-K 80 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEECSSCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEE-T
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeeccCCCCeEEEEECCeEcCCCccEEEeCCeeEEEEecCChhcCcEEEEEEEc-c
Confidence 577766544 6788999999999999999999999999985443 23456899999999999999999999 5
Q ss_pred CCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEEC--CeEeccc---CCCCeEEecCCcCccc
Q psy17146 615 FPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYR--GEEIGVG---SSDDYSVLEDPLKEGI 689 (1011)
Q Consensus 615 ~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~--g~~l~~~---~~~~~~~~~~~~~~~~ 689 (1011)
.+.....+.|.|..+|.+.......+..|+.++|.|.+.|.|.| .+.|+++ +..+... ...++.+.. ...
T Consensus 81 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~g~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 155 (192)
T 2va4_A 81 AGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKG----QHG 155 (192)
T ss_dssp TEEEEEEEEEEEEEEEEEEEECCEEECTTSEEEEEEEEEEESCC-EEEEEETTTTEEECTTCBCTTSCEEEEE----ETT
T ss_pred ccccceEEEEEEEccCcccccCcceEEeCCeEEEEEEecCCCCC-cEEEEeCCCCceeeccccccCCcEEEee----ccC
Confidence 66777888999999999886666778889999999999999999 8999998 6665531 134444433 233
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 156 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 192 (192)
T 2va4_A 156 SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192 (192)
T ss_dssp EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred ceEEEEecCCcccCEEEEEEEEecCCceEEEEEEEeC
Confidence 5789999999999999999999999999999999873
No 108
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.88 E-value=9.8e-23 Score=206.80 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=127.9
Q ss_pred eEEEcCCCcEEEEEE---EecCCCCeEEEEecCCcee--------------------------ecCCCcEEEeecCCCCC
Q psy17146 553 SVQVDRGAGVNLLCD---VDGNPAPEITWIHEDSDKV--------------------------VGNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~---~~g~p~p~v~W~k~~~~~~--------------------------~~~~~~L~I~~v~~~d~ 603 (1011)
++.+..|+.++|.|. +.+.|.+.|+|+|+|.... ..+...|.|.+++.+|+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 467889999999995 5788999999999874321 12235799999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecc--cCCCCeEE
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGV--GSSDDYSV 680 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~--~~~~~~~~ 680 (1011)
|.|+|.|.| +.+..+..+.|.|..||.+.. +....+.+|++++|.|.+.|.|.| .|+|++++..+.. ....++.+
T Consensus 82 G~Y~C~a~n-~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~r~~~ 159 (203)
T 4fa8_A 82 GNYLCRMKL-GETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHP-HVQWLMPEGVEPAPTAANGGVMK 159 (203)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCC-EEEECCC------------CCEE
T ss_pred eEEEEEEEc-CCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCC-EEEEEECCeeecCcccccceEEE
Confidence 999999999 678889999999999998874 456678899999999999999999 9999987755432 23456665
Q ss_pred ecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEE
Q psy17146 681 LEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVE 720 (1011)
Q Consensus 681 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~ 720 (1011)
.. ++....|.|.++..+|+|.|+|.|+|.+|++.+.
T Consensus 160 ~~----~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v 195 (203)
T 4fa8_A 160 EK----DGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV 195 (203)
T ss_dssp CT----TSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred eC----CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 54 3445567778999999999999999999988753
No 109
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.88 E-value=3.3e-22 Score=202.17 Aligned_cols=176 Identities=24% Similarity=0.364 Sum_probs=147.7
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
+..+|.|...+.++.+.+|++++|.|.+.+.|.+.+.|+|++..+. ..++..|.|.+++.+|+|.|+|.+.|
T Consensus 4 ~~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (192)
T 2iep_A 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANN 83 (192)
T ss_dssp CCEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEEC
T ss_pred cCCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEc
Confidence 3467889999999999999999999999999999999999875432 23445799999999999999999999
Q ss_pred cCCCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcccee
Q psy17146 613 MGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 691 (1011)
......+..+.|.|..+|.+.. +....+..|+.++|.|.+.|.|.+ .+.|+++|..+. ...++.+..+ +
T Consensus 84 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~~~--~~~~~~~~~~-------~ 153 (192)
T 2iep_A 84 GVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKP-SVSWIKGDSALR--ENSRIAVLES-------G 153 (192)
T ss_dssp SSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCC-EEEEEETTEECC--CCSSEEECTT-------S
T ss_pred CCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCc-eEEEEeCCEEcc--CCCcEEEecC-------C
Confidence 4333467778899999998874 456778999999999999999999 999999999987 3445555442 5
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEEEec
Q psy17146 692 TLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLKPQ 726 (1011)
Q Consensus 692 ~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~ 726 (1011)
.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 154 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~ 189 (192)
T 2iep_A 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189 (192)
T ss_dssp CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence 79999999999999999999999977 456777764
No 110
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.88 E-value=1.2e-21 Score=197.93 Aligned_cols=174 Identities=20% Similarity=0.304 Sum_probs=145.8
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCC-CCeEEEEe-cCCceee-----------cCCCcEEEeecCCCCCEEEEEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIH-EDSDKVV-----------GNSPNLTLLMTSDDLAGRYYCKA 610 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p-~p~v~W~k-~~~~~~~-----------~~~~~L~I~~v~~~d~G~Y~C~a 610 (1011)
++.|...|.+..+.+|+.++|.|.+.+.+ .+.+.|++ ++..+.. ...+.|.|.+++.+|+|.|+|.|
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence 45677788899999999999999999987 88999999 6544321 34478999999999999999999
Q ss_pred EecCCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccc
Q psy17146 611 SVMGFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689 (1011)
Q Consensus 611 ~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~ 689 (1011)
.|...+..+..+.|.|..+|.+. .+....+.+|+.++|.|.+.|.|.| .+.|+++|..+......++.+..+
T Consensus 82 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~------ 154 (191)
T 1epf_A 82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP-TIIWKHKGRDVILKKDVRFIVLSN------ 154 (191)
T ss_dssp EETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCC-EEEEEETTEEGGGGCCTTEEECTT------
T ss_pred EcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCC-EEEEEECCEEeeccCCceEEEecC------
Confidence 99544678888999999999987 4567778999999999999999999 899999999998656666666543
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+.|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus 155 -~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 155 -NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp -SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred -CeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 47999999999999999999999986655555543
No 111
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.88 E-value=9.2e-22 Score=199.48 Aligned_cols=169 Identities=17% Similarity=0.293 Sum_probs=141.7
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEe-cCCCCeEEEEecCCceeec----------C--------CCcEEEeecCCCCCE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVG----------N--------SPNLTLLMTSDDLAG 604 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~-g~p~p~v~W~k~~~~~~~~----------~--------~~~L~I~~v~~~d~G 604 (1011)
+|.|...|.+..+.+|++++|.|.+. +.|.+.+.|+|++..+... . .+.|.|.+++.+|+|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 81 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence 68899999999999999999999999 9999999999998554322 1 358999999999999
Q ss_pred EEEEEEEecCCCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecC
Q psy17146 605 RYYCKASVMGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLED 683 (1011)
Q Consensus 605 ~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~ 683 (1011)
.|+|.|.|......+..+.|.|..+|.+.. +....+.+|+.++|.|.+.|.|.|..+.|+++|..+..... .
T Consensus 82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~--~----- 154 (195)
T 2c5d_C 82 QYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG--H----- 154 (195)
T ss_dssp EEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTT--S-----
T ss_pred EEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCC--c-----
Confidence 999999994333345568999999998874 55677899999999999999998867999999998874221 1
Q ss_pred CcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE-EEEEEEe
Q psy17146 684 PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS-VEIMLKP 725 (1011)
Q Consensus 684 ~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~V 725 (1011)
...+.|.|.+++ |+|.|+|.|.|..|... +.+.|.|
T Consensus 155 ----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 155 ----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp ----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred ----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 124789999987 78999999999999885 7888887
No 112
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.88 E-value=1e-21 Score=200.52 Aligned_cols=169 Identities=17% Similarity=0.262 Sum_probs=132.0
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEec-CCCCeEEEEecCCceeec-------C----CCcEEEeecCCCCCEEEEEEEEe
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDG-NPAPEITWIHEDSDKVVG-------N----SPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g-~p~p~v~W~k~~~~~~~~-------~----~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
|.|... .+..+.+|+.+.|.|.+.+ .|.|.++|+|+|..+... + ..+|.|.++..+|+|.|+|.|.|
T Consensus 4 p~~~~~-~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N 82 (207)
T 3rbs_A 4 PFTKSE-LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD 82 (207)
T ss_dssp --CCEE-EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred CeeecC-CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence 455443 3788999999999999964 799999999998665321 1 12699999999999999999999
Q ss_pred cCCCceeeEEEEEEc---------------------CCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEe
Q psy17146 613 MGFPEVGAEATVYLK---------------------GRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEI 670 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V~---------------------~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l 670 (1011)
+. ......+.+. .+|.+..+....+.+|+.++|.|.+.|. |.| .|+|+|||.++
T Consensus 83 -g~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p-~i~W~k~g~~l 158 (207)
T 3rbs_A 83 -GK--ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKET-HIVWYKDEREI 158 (207)
T ss_dssp -TT--EEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTTC-EEEEEETTEEE
T ss_pred -CC--eEEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCCC-EEEEEECCEEC
Confidence 33 3333333221 3677775555778999999999999999 889 99999999999
Q ss_pred cccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 671 GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.. ..++.. .....+|.|.++..+|+|.|+|.|.|.+|.++.++.|.++
T Consensus 159 ~~--~~~~~~------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~ 206 (207)
T 3rbs_A 159 SV--DEKHDF------KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206 (207)
T ss_dssp CC--CCCCCC------SSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred CC--CCceEc------CCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence 74 233322 2234689999999999999999999999999999998763
No 113
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.88 E-value=1.6e-21 Score=196.38 Aligned_cols=173 Identities=21% Similarity=0.398 Sum_probs=142.3
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
+|.|...|.+..+.+|+.++|.|.+.+.|.+.+.|++++..+. ...+++|.|.+++.+|+|.|+|.|.|...
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 81 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 81 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTT
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCC
Confidence 5788888999999999999999999999999999999985543 23457899999999999999999999432
Q ss_pred C-ceeeEEEEEEcCCCeeecCC---ceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcccee
Q psy17146 616 P-EVGAEATVYLKGRPTIISHR---TQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691 (1011)
Q Consensus 616 ~-~~s~~~~l~V~~~P~i~~~~---~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 691 (1011)
+ .....+.+.|..+|.+.... ...+..|+.++|.|.+.|.|.| .+.|+++|..+. ...++.+... .+
T Consensus 82 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~v~W~~~g~~~~--~~~~~~~~~~------~~ 152 (189)
T 2v5t_A 82 GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP-AISWFRNGKLIE--ENEKYILKGS------NT 152 (189)
T ss_dssp TEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCC-EEEEEETTEECC--CSSSEEEETT------TT
T ss_pred CceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCC-eEEEEECCEECc--CCCcEEEecC------CC
Confidence 3 34467788888888887442 4567789999999999999999 999999999987 3445555432 36
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 692 TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 692 ~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 153 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 186 (189)
T 2v5t_A 153 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186 (189)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEE
Confidence 8999999999999999999999999998888876
No 114
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.87 E-value=6.6e-21 Score=192.06 Aligned_cols=171 Identities=22% Similarity=0.312 Sum_probs=138.5
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEe-cCCcee------ec---CCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIH-EDSDKV------VG---NSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k-~~~~~~------~~---~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
.|...|.+..+.+|+.++|.|.+.+.|. .+.|+| ++..+. .. ....|.|.++..+|+|.|+|.|.|...
T Consensus 4 ~~~~~~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g 82 (189)
T 2v44_A 4 QVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG 82 (189)
T ss_dssp EEEESCSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTS
T ss_pred EEEecCCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCCceEEEECCCCeEEEEEccCCcccCeEEEEEEEeCCC
Confidence 4566788899999999999999999988 999999 553322 11 124899999999999999999999433
Q ss_pred CceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEE
Q psy17146 616 PEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLI 694 (1011)
Q Consensus 616 ~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~ 694 (1011)
...+..+.|.|..+|.+. .+....+..|+.++|.|.+.|.|.| .+.|+++|..+......++.+..+ +.|.
T Consensus 83 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~-------~~L~ 154 (189)
T 2v44_A 83 QTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAP-AVSWLYHNEEVTTISDNRFAMLAN-------NNLQ 154 (189)
T ss_dssp CEEEEEEEEEEECCCEEESCCCSEEEETTSCEEECCEEECSSCC-EEEEEEEC--CEECCCTTEEECTT-------SCEE
T ss_pred CcEEEEEEEEEecCCceeecCCcEEEeCCCCEEEEEEECcCCCC-cEEEEECCcEEeccCCCCEEEecC-------CcEE
Confidence 334788899999999887 4556779999999999999999999 999999999987655667766553 5899
Q ss_pred EcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 695 IRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 695 I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
|.++..+|+|.|+|.|.|..|.......+.|
T Consensus 155 i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v 185 (189)
T 2v44_A 155 ILNINKSDEGIYRCEGRVEARGEIDFRDIIV 185 (189)
T ss_dssp ETTCCGGGCEEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEcCcccCeEEEEEEEccccCceeeeeEEE
Confidence 9999999999999999999987765544443
No 115
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.87 E-value=1.9e-21 Score=194.67 Aligned_cols=167 Identities=22% Similarity=0.378 Sum_probs=136.4
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec--------C---CCcEEEeecCCCCCEEEEEEEEe
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG--------N---SPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~--------~---~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
+|.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+|++..+... . .+.|.|.+++.+|+|.|+|.|.|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 81 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED 81 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence 577888899999999999999999999999999999998543221 1 26899999999999999999998
Q ss_pred cCCCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcccee
Q psy17146 613 MGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 691 (1011)
......+..+.|.|..+|.+.. +....+.+|+.++|.|.+.|.|.|..+.|+++|..+..... ...
T Consensus 82 ~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-------------~~~ 148 (182)
T 1rhf_A 82 GGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------------SPS 148 (182)
T ss_dssp CTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------------SSE
T ss_pred CCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-------------Cce
Confidence 5333467889999999999874 55677999999999999999999878999999998853111 247
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCCCeE-EEEEEEe
Q psy17146 692 TLIIRESRHDHFGVYNCSVSNPYGSDS-VEIMLKP 725 (1011)
Q Consensus 692 ~L~I~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~V 725 (1011)
.|.|.++ +|+|.|+|.|.|..|... .++.|.|
T Consensus 149 ~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 149 VLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp EEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 8999998 589999999999999874 4777776
No 116
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.4e-21 Score=200.27 Aligned_cols=169 Identities=23% Similarity=0.316 Sum_probs=144.2
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEA 622 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~ 622 (1011)
..+.|...|.++.+.+|+.+.|.|.+.+.|.+.+.|+|++..+.....+.|.|.+++.+|+|.|+|.|.|......+..+
T Consensus 17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~ 96 (218)
T 3k0w_A 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWS 96 (218)
T ss_dssp --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCCSSEEEETTCCGGGCEEEEEEEECTTCCEECCCE
T ss_pred CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCCCCEEEEccCChhhCeEeEEEEEcCCCCceeeEE
Confidence 46788899999999999999999999999999999999998777777889999999999999999999994333446678
Q ss_pred EEEEcCC---------------Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcC
Q psy17146 623 TVYLKGR---------------PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686 (1011)
Q Consensus 623 ~l~V~~~---------------P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~ 686 (1011)
.|.|..+ |.+. .+....+..|+.++|.|.+.|.|.| .+.|+++|..+...
T Consensus 97 ~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~v~W~~~~~~~~~~------------- 162 (218)
T 3k0w_A 97 QLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIP-HYQWFKNELPLTHE------------- 162 (218)
T ss_dssp EEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCC-EEEEEETTEECTTC-------------
T ss_pred EEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCC-eEEEEECCEECCCC-------------
Confidence 8888765 4555 4456778999999999999999999 99999999988632
Q ss_pred ccceeEEEEcCCCCCCCEEEEEEEEcCCCC-eEEEEEEEecC
Q psy17146 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGS-DSVEIMLKPQK 727 (1011)
Q Consensus 687 ~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~ 727 (1011)
....|.|.++..+|+|.|+|.|.|..|. .+..+.|.|.+
T Consensus 163 --~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 202 (218)
T 3k0w_A 163 --TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202 (218)
T ss_dssp --CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred --CCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence 1258999999999999999999999997 67788888754
No 117
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.86 E-value=8.1e-21 Score=192.23 Aligned_cols=188 Identities=18% Similarity=0.296 Sum_probs=145.3
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.... ..++.+... .+..+|.|.+++.+|+|.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~--~~~~~L~i~~~~~~d~G~ 77 (194)
T 2a38_A 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTST----LPGVQISFS--DGRAKLTIPAVTKANSGR 77 (194)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTT----STTCEEEEE--TTEEEEEESSCCGGGCEE
T ss_pred CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEccccc----CCceEEEeC--CCEEEEEECCCCcccCEE
Confidence 4688999999999999999999999987 667999999997764322 123444332 356789999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEE
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~ 183 (1011)
|+|.+.+.. +.....+.|.|.....+|.+. ......+.+|+.+.|.|. +.++|.+.+.|+|++..+..+.++..
T Consensus 78 Y~C~~~n~~----~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-~~g~p~~~v~W~~~~~~~~~~~~~~~ 152 (194)
T 2a38_A 78 YSLKATNGS----GQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVR-VTGIPTPVVKFYRDGAEIQSSLDFQI 152 (194)
T ss_dssp EEEEEEETT----EEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEE-EEEESCCEEEEEETTEECCCSSSEEE
T ss_pred EEEEEEcCC----ceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEE-EEEecCCeEEEEECCEECCCCCcEEE
Confidence 999998853 335566788888766666554 334667889999999999 67899999999999988876555543
Q ss_pred eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v 232 (1011)
..... ..+|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 153 ~~~~~------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V 193 (194)
T 2a38_A 153 SQEGD------LYSLLIAEAYPEDSGTYSVNATNSVGRA--TSTAELLV 193 (194)
T ss_dssp EEETT------EEEEEEEEECGGGCEEEEEEEEETTEEE--EEEEEEEE
T ss_pred EEcCC------EEEEEECCCChhcCeEEEEEEEeCCCce--EEEEEEEE
Confidence 33222 2479999999999999999999999876 44444443
No 118
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.86 E-value=1.4e-20 Score=193.54 Aligned_cols=194 Identities=25% Similarity=0.375 Sum_probs=142.5
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeec-ccCCC
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPV-MLDDD 102 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v-~~~D~ 102 (1011)
..+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. .+.............|.|.++ +.+|+
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~-------~~~~~~~~~~~~~~~L~i~~v~~~~d~ 76 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN-------QRFEVIEFDDGSGSVLRIQPLRTPRDE 76 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC-------TTEEEEEEGGGTEEEEEECSCCTTTTC
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCC-------CceeEEEEcCCCceEEEEeccCCCCCC
Confidence 35799999999999999999999999986 6779999999987643 233332222234568999999 59999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcC----CCCCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVP----PDPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS 177 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~----p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~ 177 (1011)
|.|+|.+.+.. +..+..+.|.|... +..|.+. .+....+.+|+.+.|.|. +.|+|.+.+.|+|++..+..
T Consensus 77 G~Y~C~a~n~~----g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~-~~g~p~p~v~W~~~g~~l~~ 151 (212)
T 2yd6_A 77 AIYECVASNNV----GEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCA-ASGNPDPEITWFKDFLPVDT 151 (212)
T ss_dssp EEEEEEEEETT----EEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEE-EECSSCCEEEEEETTEEC--
T ss_pred eEEEEEEEcCC----CcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEE-ecCCCCCeEEEEECCccccC
Confidence 99999999863 34567788888764 2334554 334567889999999999 67999999999999988755
Q ss_pred c---eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCc
Q psy17146 178 N---VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK 237 (1011)
Q Consensus 178 ~---~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~ 237 (1011)
. .++....... .+.|.|.+++.+|+|.|+|.|.|..|.. .+....|.+...|.
T Consensus 152 ~~~~~~~~~~~~~~------~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~s~~a~l~~~~~~~ 207 (212)
T 2yd6_A 152 SNNNGRIKQLRSES------IGALQIEQSEESDQGKYECVATNSAGTR-YSAPANLYVRGTKH 207 (212)
T ss_dssp ----CCEEEEEETT------EEEEEECSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEEC---
T ss_pred cCCCceEEEEecCC------eEEEEEcCCCcccCEEEEEEEECCCCcc-ccccccEEEEeccc
Confidence 3 1221111111 3689999999999999999999999976 34455666655554
No 119
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.86 E-value=9.1e-21 Score=192.41 Aligned_cols=189 Identities=20% Similarity=0.233 Sum_probs=144.9
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. ...++.+... ..+.++|.|.+++.+|+|.
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~-----~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~ 76 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA-----DGLKYRIQEF-KGGYHQLIIASVTDDDATV 76 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCC-----CSSSEEEEEE-TTTEEEEEECSCCGGGCSE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECcc-----CCCcEEEEEc-CCCEEEEEECcCCHHhCEE
Confidence 4689999999999999999999999987 5679999999987642 2245555433 3456799999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCC--C-eeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeE
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDP--P-RIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRV 181 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~--~-~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~ 181 (1011)
|+|.+.+.. +..+..+.|.|..++.. + .+.....+.+.+|+.+.|.|. +.++|.+.+.|+|++..+....++
T Consensus 77 Y~C~~~n~~----g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~i~W~~~~~~~~~~~~~ 151 (197)
T 2j8h_A 77 YQVRATNQG----GSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIP-FSGKPDPVITWQKGQDLIDNNGHY 151 (197)
T ss_dssp EEEEEEETT----EEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEE-EEEESCCEEEEEESSCEECSSSSC
T ss_pred EEEEEEECC----CceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEE-EEecCCCcEEEEECCEEeecCCCE
Confidence 999999863 34567788888765431 1 122223567889999999999 679999999999999888665554
Q ss_pred EEeeecCCceEEEEEEEEEee-ccCcCCcEEEEEEEeCCCCceeEEEEEEEEE
Q psy17146 182 TEEASVDGRRTTVKSTLVLTP-KKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233 (1011)
Q Consensus 182 ~~~~~~~~~~~~~~~~L~I~~-~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~ 233 (1011)
......+ .+.|.|.+ +..+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 152 ~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~--~~~~~l~V~ 196 (197)
T 2j8h_A 152 QVIVTRS------FTSLVFPNGVERKDAGFYVVCAKNRFGID--QKTVELDVA 196 (197)
T ss_dssp EEEECSS------EEEEECTTCCCGGGCEEEEEEEEETTEEE--EEEEEEEEE
T ss_pred EEEEcCC------ceEEEEeCCCCcccCEeEEEEEEeCCCcE--eEEEEEEEe
Confidence 4332222 35899999 99999999999999999876 455555543
No 120
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.86 E-value=2.3e-21 Score=197.61 Aligned_cols=167 Identities=15% Similarity=0.181 Sum_probs=138.5
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCe-EEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 621 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~-v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 621 (1011)
..|.+...|.+..+.+|+.++|.|.+.+.|.+. +.|+|++..+. ...+.|.|.+++.+|+|.|+|.|.| +..+..
T Consensus 6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~-~~~~~L~i~~v~~~D~G~Y~C~a~n---~~~s~~ 81 (204)
T 3sgj_C 6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS-SQASSYFIDAATVDDSGEYRCQTQL---STLSDP 81 (204)
T ss_dssp CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEES-CCSSEEEESSCCGGGCEEEEEEETT---SBCCCC
T ss_pred CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcc-cCccEEEEecccccCCEEEEEEeCC---Cccccc
Confidence 356777788888999999999999999998876 99999986543 3348999999999999999999987 355667
Q ss_pred EEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCC
Q psy17146 622 ATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH 700 (1011)
Q Consensus 622 ~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 700 (1011)
+.|.|..+|.+.......+.+|+.++|.|.+.+.++ + .+.|+|||..+... ...+.|.|.++..
T Consensus 82 ~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~-~v~W~k~g~~~~~~--------------~~~~~L~i~~v~~ 146 (204)
T 3sgj_C 82 VQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALH-KVTYLQNGKGRKYF--------------HHNSDFYIPKATL 146 (204)
T ss_dssp EEEEEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCE-EEEEEETTEEEEEE--------------EECCCEEESSCCG
T ss_pred EEEEEecCceEecCCceeEeCCCcEEEEEEecCCCCCc-eEEEEECCcEeecc--------------cCCceEEECcCCc
Confidence 889998888887666678899999999999977754 6 89999999987531 1136899999999
Q ss_pred CCCEEEEEEEEc-CCCCeEEEEEEEecCC
Q psy17146 701 DHFGVYNCSVSN-PYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 701 ~d~G~Y~C~a~N-~~G~~~~~~~l~V~~~ 728 (1011)
+|+|.|+|.|.| ..+..+..+.|.|.+.
T Consensus 147 ~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 175 (204)
T 3sgj_C 147 KDSGSYFCRGLVGSKNVSSETVQITITQG 175 (204)
T ss_dssp GGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred ccCEEEEEEEEeCCCceecCcEEEEEeCc
Confidence 999999999999 5556677888888643
No 121
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.85 E-value=1.9e-20 Score=192.50 Aligned_cols=190 Identities=24% Similarity=0.346 Sum_probs=145.1
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeeccc-CCC
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVML-DDD 102 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~-~D~ 102 (1011)
..+|.|...|.++.+.+|++|+|.|.+.+ +.+.+.|++++..+.. ...|+.+... ..+..+|.|.+++. +|+
T Consensus 4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~-----~~~~~~~~~~-~~~~~~L~i~~v~~~~d~ 77 (212)
T 2yd1_A 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSG-----TQSRYTVLEQ-PGGISILRIEPVRAGRDD 77 (212)
T ss_dssp -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCT-----TSTTEEEEEE-TTTEEEEEESSCCTTTTC
T ss_pred CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCC-----CcceeEEEEc-CCCeEEEEEEecCCCCcC
Confidence 45799999999999999999999999986 6679999999987641 2356666543 23557899999999 999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCC----CCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPD----PPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS 177 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~----~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~ 177 (1011)
|.|+|.+.+..+. ..+..+.|.|...+. .|.+. .+....+.+|+.+.|.|. +.+.|.+.+.|+|++..+..
T Consensus 78 G~Y~C~~~n~~g~---~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~-~~g~p~p~i~W~~~~~~~~~ 153 (212)
T 2yd1_A 78 APYECVAENGVGD---AVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCK-AIGNPTPNIYWIKNQTKVDM 153 (212)
T ss_dssp SEEEEEEECSSSC---EEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCE-EECSSCCEEEEEETTEECCT
T ss_pred ceEEEEEEeCCCC---eEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEE-eccCCCCeEEEEECCeEccc
Confidence 9999999886421 256778888887643 24444 334667889999999999 67999999999999887754
Q ss_pred c-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeC
Q psy17146 178 N-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYA 235 (1011)
Q Consensus 178 ~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~ 235 (1011)
. .++ ....+.|.|.+++.+|+|.|+|.|.|..|... +..+.|.|+..
T Consensus 154 ~~~~~----------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-s~~~~l~V~~~ 201 (212)
T 2yd1_A 154 SNPRY----------SLKDGFLQIENSREEDQGKYECVAENSMGTEH-SKATNLYVKVR 201 (212)
T ss_dssp TSTTE----------EEETTEEEECSCCGGGCEEEEEEEEETTEEEE-CCCEEEEEEC-
T ss_pred CCCeE----------EccCCeEEEccCChhhCEEEEEEeecCCCcee-EEEEEEEEEec
Confidence 2 222 11123899999999999999999999998763 22356666544
No 122
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.85 E-value=9.7e-21 Score=194.57 Aligned_cols=176 Identities=19% Similarity=0.282 Sum_probs=141.2
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----------------ecCCCcEEEeecCCCCCEEEE
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----------------VGNSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----------------~~~~~~L~I~~v~~~d~G~Y~ 607 (1011)
..|...+.++.+.+|+.+.|.|.+.+.|.+.+.|+|++..+. ....+.|.|.+++.+|+|.|+
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~ 81 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT 81 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEE
Confidence 456777889999999999999999999999999999986631 112378999999999999999
Q ss_pred EEEEec-CCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEE-EEecCCCCeEEEEECCe-EecccCC-------C
Q psy17146 608 CKASVM-GFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECS-AFSIPPPEKVTWSYRGE-EIGVGSS-------D 676 (1011)
Q Consensus 608 C~a~n~-~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~-~~g~p~p~~v~W~~~g~-~l~~~~~-------~ 676 (1011)
|.|.|. +....+..+.|.|..+|.+. .+....+.+|+.++|.|. +.|.|.| .+.|+++|. .+..... .
T Consensus 82 C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~W~~~~~~~l~~~~~~~~~~~~~ 160 (212)
T 1f97_A 82 CMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPS-EYSWFKDGISMLTADAKKTRAFMNS 160 (212)
T ss_dssp EEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCC-EEEEEETTEESBC-----CBSCSSS
T ss_pred EEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCC-EEEEEeCCcccccccccccccccCc
Confidence 999993 22356778899999888775 234456889999999999 7999999 999999999 7764322 1
Q ss_pred CeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe--EEEEEEEecC
Q psy17146 677 DYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD--SVEIMLKPQK 727 (1011)
Q Consensus 677 ~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~--~~~~~l~V~~ 727 (1011)
++.+. ...+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|.+
T Consensus 161 ~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 161 SFTID------PKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp CEEEC------TTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred eeEec------CCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 22221 224789999999999999999999999988 6677777754
No 123
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.85 E-value=1.9e-20 Score=195.23 Aligned_cols=183 Identities=18% Similarity=0.319 Sum_probs=145.5
Q ss_pred EecceeecCC----ceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee----------ecCCCcEEEeecCCCCCEEEE
Q psy17146 542 TYGPRFRARP----YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV----------VGNSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 542 ~~~P~~~~~p----~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~----------~~~~~~L~I~~v~~~d~G~Y~ 607 (1011)
..+|.|...+ ....+.+|++++|.|.+.+.|.+.+.|+|++..+. ......|.|.+++.+|+|.|+
T Consensus 13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 92 (231)
T 3ojm_B 13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92 (231)
T ss_dssp CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred ccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence 4578887665 78899999999999999999999999999985542 223457999999999999999
Q ss_pred EEEEecCCCceeeEEEEEEcCC----Ceeec--CCceeeecCCcEEEEEEEEecCCCCeEEEEE----CCeEecccCCCC
Q psy17146 608 CKASVMGFPEVGAEATVYLKGR----PTIIS--HRTQFGIPGDTARVECSAFSIPPPEKVTWSY----RGEEIGVGSSDD 677 (1011)
Q Consensus 608 C~a~n~~~~~~s~~~~l~V~~~----P~i~~--~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~----~g~~l~~~~~~~ 677 (1011)
|.|.| ..+.....+.|.|..+ |.+.. +....+..|+.++|.|.+.|.|.| .+.|++ +|..+.......
T Consensus 93 C~~~n-~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~W~~~~~~~g~~~~~~~~~~ 170 (231)
T 3ojm_B 93 CVVEN-EYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP-HIQWIKHVEKNGSKYGPDGLPY 170 (231)
T ss_dssp EEEEE-TTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCC-EEEEEEECCBTTBSBCTTSCBC
T ss_pred EEEec-ccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCC-EEEEEECCCCCCccccCCCcce
Confidence 99999 5667778888888653 34432 456778999999999999999999 999999 888776433222
Q ss_pred eEEecC-CcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 678 YSVLED-PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 678 ~~~~~~-~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
...... .......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 171 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 220 (231)
T 3ojm_B 171 LKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220 (231)
T ss_dssp EEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEe
Confidence 222211 1112234689999999999999999999999999999999984
No 124
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.85 E-value=5.6e-21 Score=189.87 Aligned_cols=167 Identities=14% Similarity=0.162 Sum_probs=137.3
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCe-EEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 621 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~-v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 621 (1011)
.+|.+...|....+.+|+.++|.|.+.+.|.+. +.|+|++..+. ...+.|.|.+++.+|+|.|+|.|.| .. .+..
T Consensus 6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~n-~~--~s~~ 81 (175)
T 1fnl_A 6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS-SQASSYFIDAATVNDSGEYRCQTNL-ST--LSDP 81 (175)
T ss_dssp CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE-SSCSEEEESSCCGGGCEEEEEECSS-SC--CCCC
T ss_pred CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEcc-CCceEEEEeCCCcccCEEEEEEeeC-Cc--cccc
Confidence 357778888888999999999999999998876 88999986553 5678999999999999999999997 22 3567
Q ss_pred EEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 622 ATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 622 ~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
+.|.|..++.+.......+.+|+.++|.|.+.+.|++..+.|+|+|..+... .....|.|.++..+
T Consensus 82 ~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~--------------~~~~~L~i~~v~~~ 147 (175)
T 1fnl_A 82 VQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF--------------HHNSDFHIPKATLK 147 (175)
T ss_dssp EEEEEECSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE--------------EECCCEEESSCCGG
T ss_pred EEEEEeCCCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC--------------CCCCEEEEcccChh
Confidence 7888877777666566778999999999999988664489999999988521 11368999999999
Q ss_pred CCEEEEEEEEcCCC-CeEEEEEEEecC
Q psy17146 702 HFGVYNCSVSNPYG-SDSVEIMLKPQK 727 (1011)
Q Consensus 702 d~G~Y~C~a~N~~G-~~~~~~~l~V~~ 727 (1011)
|+|.|+|.|.|..| ..+..+.|.|.+
T Consensus 148 d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 148 DSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp GCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred hCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 99999999999766 456677777743
No 125
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=195.29 Aligned_cols=193 Identities=17% Similarity=0.233 Sum_probs=149.6
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEE
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 469 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 469 (1011)
.+.|...|.+..+.+|+.+.|.|.+.+.|.+.+.|+|++..+.......|.|.+++.+|+|.|+|.|.|..+...+..+.
T Consensus 18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~ 97 (218)
T 3k0w_A 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQ 97 (218)
T ss_dssp -CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCCSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEE
T ss_pred CCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCCCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEE
Confidence 56788889999999999999999999999999999999877666677889999999999999999999875555566666
Q ss_pred EEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeec
Q psy17146 470 VYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRA 549 (1011)
Q Consensus 470 v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~ 549 (1011)
+.|...+......... ....+|.+..
T Consensus 98 l~V~~~~~~~~~~~~~------------------------------------------------------~~~~~p~~~~ 123 (218)
T 3k0w_A 98 LDVCDIPESFQRSVDG------------------------------------------------------VSESKLQICV 123 (218)
T ss_dssp EEEECCCGGGCTTCCS------------------------------------------------------BCCSSCEEEE
T ss_pred EEEEccCccccccccc------------------------------------------------------ccCCCceEEE
Confidence 6665443211100000 0012366777
Q ss_pred CCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCC
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGR 629 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 629 (1011)
.+....+.+|+.++|.|.+.+.|.+.+.|++++..+.......|.|.++..+|+|.|+|.|.|..+...+..+.|.|...
T Consensus 124 ~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~ 203 (218)
T 3k0w_A 124 EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 203 (218)
T ss_dssp CCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC-
T ss_pred CCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCC
Confidence 78888999999999999999999999999999987777777899999999999999999999943344788899999886
Q ss_pred CeeecCC
Q psy17146 630 PTIISHR 636 (1011)
Q Consensus 630 P~i~~~~ 636 (1011)
+.+..+.
T Consensus 204 ~~~~~P~ 210 (218)
T 3k0w_A 204 NNLGHPD 210 (218)
T ss_dssp -------
T ss_pred ccCCCCC
Confidence 6665443
No 126
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.85 E-value=1.5e-20 Score=197.04 Aligned_cols=192 Identities=18% Similarity=0.275 Sum_probs=137.8
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.+.+...|.++.+.+|++|+|.|.+.+. .+.+.|+|++.... ........+|+.+.. ..+.++|+|.++
T Consensus 24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v 101 (237)
T 3sob_L 24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTISSL 101 (237)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSC
T ss_pred cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEc--CCCEEEEEECCC
Confidence 4667788999999999999999999984 66999999541110 011112235777663 336779999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCC-CcEEEEEeCCcee
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKP-PAEITWIDGTGTV 175 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P-~~~i~W~k~~~~l 175 (1011)
+.+|+|.|+|.+.+... ......+.|.|...+.+|.+.. .+...+.+|+.+.|.|.+.++.| .+.++|+|++..+
T Consensus 102 ~~~D~G~Y~C~~~~~~~---~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~ 178 (237)
T 3sob_L 102 QPEDFATYYCQQSYTTP---PTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQ 178 (237)
T ss_dssp CGGGCEEEEEEECSSSS---CEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred ChhhCeEEEEeeccCCc---eEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCC
Confidence 99999999999987532 1234456788877666666643 33334446889999999555566 6899999999887
Q ss_pred eece-eEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCce
Q psy17146 176 MSNV-RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223 (1011)
Q Consensus 176 ~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~ 223 (1011)
..+. ............+...+.|.|.....+|+|.|+|.|.|......
T Consensus 179 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~ 227 (237)
T 3sob_L 179 SGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP 227 (237)
T ss_dssp CSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred CCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCc
Confidence 6543 22212222334566678899999999999999999999877553
No 127
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.84 E-value=6.4e-21 Score=193.41 Aligned_cols=165 Identities=16% Similarity=0.204 Sum_probs=117.9
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
.+|.|...|.. .+.+|++++|.|.+.+.|. .+.|+|++..+. ....+.|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA 81 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence 46788877764 7899999999999998876 999999986552 2345789999999999999999999842
Q ss_pred C-CceeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccce
Q psy17146 615 F-PEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIK 690 (1011)
Q Consensus 615 ~-~~~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~ 690 (1011)
. ...+..+.|.|.. +|.|...+...+.+|+.++|.|.+.+.| + .+.|+|+|..+..... ...... .....
T Consensus 82 g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p-~-~~~W~k~g~~~~~~~~-~~~~~~---~~~~~ 155 (196)
T 2d3v_A 82 GWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF-D-RFILTEEGDHKLSWTL-DSQLTP---SGQFQ 155 (196)
T ss_dssp EECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSCC-S-EEEEEEC---CCEEEE-ECEECT---TSCEE
T ss_pred CcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCC-C-EEEEEccCCccccccc-cccccc---CCCce
Confidence 2 2346677888876 5777765556789999999999999998 7 8999999988742110 001111 12345
Q ss_pred eEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 691 STLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 691 ~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
..|.|.+++.+|+|.|+|.|.|..+
T Consensus 156 ~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 156 ALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp EEEECCCCBTTBCEEEEEEEEETTE
T ss_pred eEEEeeecCcccCeeEEEEEEccCC
Confidence 7999999999999999999999876
No 128
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=190.58 Aligned_cols=178 Identities=12% Similarity=0.136 Sum_probs=129.8
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC--CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
|.|... .++.+.+|+.+.|.|.+.. |.+.+.|+||+.++.. .+|+.+..+...+.++|.|.+++.+|+|.|
T Consensus 4 p~~~~~-~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~------~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y 76 (207)
T 3rbs_A 4 PFTKSE-LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE------GPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 76 (207)
T ss_dssp --CCEE-EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECS------SSSCEEEECTTTCEEEEEESCCCGGGCEEE
T ss_pred CeeecC-CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECcc------CCCEEEEEeCCCCEEEEEECCCChhhCEEE
Confidence 555554 4789999999999999974 7789999999988743 346666555556778999999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcC------------------CCCCeeecCCeeeecCCCcEEEEEEccCCC-CCcEE
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVP------------------PDPPRIVQGDTLYTTEDREIELECISANGK-PPAEI 166 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~------------------p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~-P~~~i 166 (1011)
+|.+.|+. .+....+.+... ..+|.+.......+.+|+.+.|.|. +.|. |.|++
T Consensus 77 ~C~a~Ng~------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~-v~g~~P~p~i 149 (207)
T 3rbs_A 77 TFQLQDGK------ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCK-VANIKKETHI 149 (207)
T ss_dssp EEEEEETT------EEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEE-EESCCTTCEE
T ss_pred EEEEECCC------eEEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEE-EeCCCCCCEE
Confidence 99999831 222233322100 0134443333467889999999999 5677 99999
Q ss_pred EEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 167 TWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 167 ~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
+|+|++..+..+.++. ..+ ...+|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 150 ~W~k~g~~l~~~~~~~---~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 202 (207)
T 3rbs_A 150 VWYKDEREISVDEKHD---FKD-----GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK 202 (207)
T ss_dssp EEEETTEEECCCCCCC---CSS-----EEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EEEECCEECCCCCceE---cCC-----CEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEE
Confidence 9999999886644321 111 1357999999999999999999999997744443
No 129
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.84 E-value=1.4e-20 Score=199.74 Aligned_cols=173 Identities=19% Similarity=0.348 Sum_probs=123.1
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCC-----CCeEEEEecCCc--e------------------ee---cCCCcEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP-----APEITWIHEDSD--K------------------VV---GNSPNLTL 595 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p-----~p~v~W~k~~~~--~------------------~~---~~~~~L~I 595 (1011)
++.+...|..+.+.+|++++|.|.+.+.| .+.+.|+|++.. . .. ....+|+|
T Consensus 38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 117 (254)
T 2c1o_A 38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKI 117 (254)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEE
Confidence 55666778889999999999999999998 489999985421 1 11 12237999
Q ss_pred eecCCCCCEEEEEEEEecCCCceeeEEEEEEcC---CCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEe
Q psy17146 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG---RPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEI 670 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~---~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l 670 (1011)
.+++.+|+|.|+|.|.|...........|.|.. +|.+.. +.......|+.++|.|.+.|. |.+..|+|+|||.++
T Consensus 118 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l 197 (254)
T 2c1o_A 118 SRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 197 (254)
T ss_dssp SSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEE
T ss_pred CcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcc
Confidence 999999999999999984322233345677754 677663 333334468899999999985 443479999999988
Q ss_pred cccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 671 GVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
............+ .++ ..+.|.|.++..+|+|.|+|.|.|......
T Consensus 198 ~~~~~~~~~~~~~--~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 246 (254)
T 2c1o_A 198 QNGVLNSWTDQDS--KDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP 246 (254)
T ss_dssp CTTEEEEECCCCT--TTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSC
T ss_pred cCcceeccccccC--CCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCCc
Confidence 6420011111110 111 257899999999999999999999987653
No 130
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.84 E-value=3.3e-20 Score=187.24 Aligned_cols=187 Identities=16% Similarity=0.254 Sum_probs=139.7
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC-C-CCeeEEee-CCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID-K-TGVLQWTK-DDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~-~~~v~W~k-~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
+++.|.+.|.++.+.+|++++|.|.+.+ + .+.+.|++ ++..+.. ...|+.+... ..+..+|.|.+++.+|+
T Consensus 1 rp~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~-----~~~~~~~~~~-~~~~~~L~i~~~~~~d~ 74 (191)
T 1epf_A 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-----NQQRISVVWN-DDDSSTLTIYNANIDDA 74 (191)
T ss_dssp --CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECC-----BSSSEEEEEE-ETTEEEEEECSCCGGGC
T ss_pred CceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccC-----CCCeEEEEEC-CCCceEEEEccCCcccC
Confidence 3577999999999999999999999998 3 57999999 7766532 2346665543 23567899999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
|.|+|.+.+... ...+..+.|.|..+|. ....+....+.+|+.+.|.|. +.++|.+.+.|+|++..+.......
T Consensus 75 G~Y~C~~~~~~~---~~~~~~~~l~v~~~p~--~~~~~~~~~~~~g~~~~l~C~-~~g~p~~~v~W~~~~~~~~~~~~~~ 148 (191)
T 1epf_A 75 GIYKCVVTAEDG---TQSEATVNVKIFQKLM--FKNAPTPQEFKEGEDAVIVCD-VVSSLPPTIIWKHKGRDVILKKDVR 148 (191)
T ss_dssp EEEEEEEEETTT---EEEEEEEEEEEECCSE--EEECCSSEECCTTSCEEECCE-EECSSCCEEEEEETTEEGGGGCCTT
T ss_pred EEEEEEEEcCCC---cceEEEEEEEeecCce--EecCCCcEeecCCCeEEEEEE-ECCCCCCEEEEEECCEEeeccCCce
Confidence 999999998642 3456667777775432 233445667889999999999 6699999999999988775422111
Q ss_pred EeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEE
Q psy17146 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLL 231 (1011)
Q Consensus 183 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~ 231 (1011)
.....+ +.|.|.+++.+|+|.|+|.|.|..+.......+.|.
T Consensus 149 ~~~~~~-------~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~ 190 (191)
T 1epf_A 149 FIVLSN-------NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190 (191)
T ss_dssp EEECTT-------SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred EEEecC-------CeEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence 111222 269999999999999999999998766555555554
No 131
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.84 E-value=6.2e-20 Score=188.61 Aligned_cols=162 Identities=18% Similarity=0.296 Sum_probs=128.6
Q ss_pred CCCcEEEEEEEecC-CCCeEEEEecCCceee---------cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 558 RGAGVNLLCDVDGN-PAPEITWIHEDSDKVV---------GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 558 ~G~~~~l~C~~~g~-p~p~v~W~k~~~~~~~---------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
.++.+.|.|.+.+. |.+.+.|+|++..+.. .....|.|.+++.+|+|.|+|.|.| ..+.....+.|.|.
T Consensus 16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n-~~~~~~~~~~l~v~ 94 (212)
T 2r15_A 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFD-GKTGHQKTVDLSGQ 94 (212)
T ss_dssp CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEC-SSCEEEEEEEECHH
T ss_pred cCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEec-CCcceEEEEEEEEe
Confidence 35567888888875 4778889888754322 1224599999999999999999999 66777777777765
Q ss_pred C--------------------CCeee-c-CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc
Q psy17146 628 G--------------------RPTII-S-HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 628 ~--------------------~P~i~-~-~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
. +|.+. . +....+.+|+.++|.|.+.|.|.| .+.|+++|..+.. ..++.+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~v~W~~~~~~~~~--~~~~~~~~~-- 169 (212)
T 2r15_A 95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPP-EVSWLKNEKALAQ--TDHCNLKFE-- 169 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCC-EEEEEETTEEECC--CSSEEEEEE--
T ss_pred eccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCc-eEEEEECCeECcc--CCCEEEEEc--
Confidence 2 34443 3 345679999999999999999999 8999999999984 455665543
Q ss_pred CccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 686 ~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.+..+.|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 170 -~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 209 (212)
T 2r15_A 170 -AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209 (212)
T ss_dssp -TTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -CCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence 2445799999999999999999999999999999998874
No 132
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.84 E-value=6e-20 Score=184.11 Aligned_cols=164 Identities=23% Similarity=0.348 Sum_probs=132.4
Q ss_pred eEEEcCCCcEEEEEEEecCCCC--eEEEEecCCceeecC----CCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDKVVGN----SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~p--~v~W~k~~~~~~~~~----~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
...+.+|+.++|.|.+.+.|.| .+.|+|++..+.... ...|.|. +.+|+|.|+|.|.| ..+..+.|.|
T Consensus 7 ~~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n----~~~~~~~l~V 80 (184)
T 3b5h_A 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLP----EPMGTANIQL 80 (184)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEES----TTSCEEEEEE
T ss_pred EEEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCCcEEEEEe--chhhCeEEEEEEEC----CcCcEEEEEE
Confidence 3567899999999999998888 999999986654332 2356555 68999999999998 3447789999
Q ss_pred cCCCeeecC-CceeeecCCcEEEEEEEEecC-CCCeEEEEE---CCeE-ecccCCCCeEEecCCcCccceeEEEEcCCC-
Q psy17146 627 KGRPTIISH-RTQFGIPGDTARVECSAFSIP-PPEKVTWSY---RGEE-IGVGSSDDYSVLEDPLKEGIKSTLIIRESR- 699 (1011)
Q Consensus 627 ~~~P~i~~~-~~~~v~~G~~v~L~C~~~g~p-~p~~v~W~~---~g~~-l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~- 699 (1011)
..+|.+... ....+.+|+.++|.|.+.|.| .| .+.|++ ++.. +......++.+.. .+..+.|.|.++.
T Consensus 81 ~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~v~~ 155 (184)
T 3b5h_A 81 HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVT-DWAWYKITDSEDKALMNGSESRFFVSS----SQGRSELHIENLNM 155 (184)
T ss_dssp CCSCCCEESCSEEEECTTSCEEEEEECCCSSCCC-EEEEEECCSSSCEECCTTGGGTEEEEE----ETTEEEEEECSCCT
T ss_pred ecCCceeecCCCcEEcCCCcEEEEEEECCCCCCC-eEEEEEcCCCCCEEeecCCCCEEEEEe----cCCeeEEEEeeccc
Confidence 999998744 566789999999999999999 67 999999 5544 4333346677664 3445799999999
Q ss_pred CCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 700 HDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.+|+|.|+|.|.|.+|.....+.|.|.+
T Consensus 156 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 156 EADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp TTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred cccCceEEEEEEeCCCcceEEEEEEEec
Confidence 9999999999999999999999998853
No 133
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.84 E-value=2e-20 Score=193.22 Aligned_cols=174 Identities=22% Similarity=0.392 Sum_probs=137.2
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee---------cCCCcE----EEeecCCCCCEEEEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV---------GNSPNL----TLLMTSDDLAGRYYCK 609 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~---------~~~~~L----~I~~v~~~d~G~Y~C~ 609 (1011)
.+|.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+|++..+.. ..++.+ +|.+++.+|+|.|+|.
T Consensus 8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~ 87 (217)
T 2vr9_A 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87 (217)
T ss_dssp CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence 578999999999999999999999999999999999999855432 222333 6888999999999999
Q ss_pred EEecCCCc-eeeEEEEEEcC-CCeee-cCCceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEeccc------CCCCeE
Q psy17146 610 ASVMGFPE-VGAEATVYLKG-RPTII-SHRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVG------SSDDYS 679 (1011)
Q Consensus 610 a~n~~~~~-~s~~~~l~V~~-~P~i~-~~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~------~~~~~~ 679 (1011)
|.|. .+. .+..+.|.|.. +|.+. .+....+..|+.++|.|.+ .|.|.| .+.|+++|..+... ...++.
T Consensus 88 ~~n~-~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~ 165 (217)
T 2vr9_A 88 AKNR-VGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP-TLIWIKDGVPLDDLKAMSFGASSRVR 165 (217)
T ss_dssp EEET-TEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCC-EEEEEETTEEECCCCCC---CCCSEE
T ss_pred EecC-CCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCC-eEEEEECCcCCCcccccccccCCcEE
Confidence 9994 433 34456666654 34443 4566778999999999999 899999 99999999998742 223333
Q ss_pred EecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 680 VLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 680 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+.. .+.|.|.++..+|+|.|+|.|.|.+|....+..+.+
T Consensus 166 ~~~-------~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv 204 (217)
T 2vr9_A 166 IVD-------GGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204 (217)
T ss_dssp EET-------TTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred ecC-------CCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEE
Confidence 332 258999999999999999999999998876655544
No 134
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.84 E-value=7.7e-20 Score=184.17 Aligned_cols=182 Identities=13% Similarity=0.256 Sum_probs=138.1
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCCCCeeEEee-CCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTK-DDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k-~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
.|...|.++.+.+|++++|.|.+.+....+.|++ ++..+ ....|+.+..++ +..+|.|.+++.+|+|.|+|
T Consensus 4 ~~~~~~~~~~v~~G~~v~L~C~~~~~p~~v~W~~~~~~~~------~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C 75 (189)
T 2v44_A 4 QVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKI------ISTQRVVVQKEG--VRSRLTIYNANIEDAGIYRC 75 (189)
T ss_dssp EEEESCSEEEEETTCCEEEEEEEEECCSEEEEECTTSCBC------CCCSSEEEEEET--TEEEEEECSCCGGGCEEEEE
T ss_pred EEEecCCceEEecCCcEEEEEEeecCCeeEEEEeCCCCcc------CCCceEEEECCC--CeEEEEEccCCcccCeEEEE
Confidence 5788999999999999999999987545999999 56444 233566665443 45689999999999999999
Q ss_pred EEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee--ceeEEEee
Q psy17146 108 QVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS--NVRVTEEA 185 (1011)
Q Consensus 108 ~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~--~~~~~~~~ 185 (1011)
.+.+..+. ..+..+.|.|..+|. .........+.+|+.+.|.|. +.+.|.+.++|+|++..+.. ..++. .
T Consensus 76 ~~~~~~g~---~~~~~~~l~v~~~p~--~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~v~W~~~~~~~~~~~~~~~~--~ 147 (189)
T 2v44_A 76 QATDAKGQ---TQEATVVLEIYQKLT--FREVVSPQEFKQGEDAEVVCR-VSSSPAPAVSWLYHNEEVTTISDNRFA--M 147 (189)
T ss_dssp EEECTTSC---EEEEEEEEEEECCCE--EESCCCSEEEETTSCEEECCE-EECSSCCEEEEEEEC--CEECCCTTEE--E
T ss_pred EEEeCCCC---cEEEEEEEEEecCCc--eeecCCcEEEeCCCCEEEEEE-ECcCCCCcEEEEECCcEEeccCCCCEE--E
Confidence 99986432 236677888886552 222334567889999999999 66999999999999887753 22221 1
Q ss_pred ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEE
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~ 233 (1011)
..+ +.|.|.+++.+|+|.|+|.|.|..+.......+.|.|+
T Consensus 148 ~~~-------~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v~Vn 188 (189)
T 2v44_A 148 LAN-------NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN 188 (189)
T ss_dssp CTT-------SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred ecC-------CcEEEEEcCcccCeEEEEEEEccccCceeeeeEEEEEe
Confidence 222 37999999999999999999999987766677777654
No 135
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.84 E-value=5.7e-20 Score=186.34 Aligned_cols=187 Identities=17% Similarity=0.293 Sum_probs=142.9
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. ..++.+..+ .+..+|.|.+++.+|+|.
T Consensus 6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------~~~~~~~~~--~~~~~L~i~~~~~~d~G~ 77 (197)
T 3lcy_A 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQ------SRKYKMSSD--GRTHTLTVMTEEQEDEGV 77 (197)
T ss_dssp EEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECC------CSSEEEEES--SSEEEEEEECCSGGGCEE
T ss_pred CCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCC------CccEEEEeC--CCEEEEEEecCCccCCEE
Confidence 4789999999999999999999999976 6679999999977632 245555543 356689999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCe-eecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEE
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPR-IVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~-i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~ 183 (1011)
|+|.+.+.. +..+..+.|.|...|.... ........+.+|+.+.|.|. +.++|.+.+.|+|++..+..+.++..
T Consensus 78 Y~C~~~n~~----~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~p~p~v~W~~~~~~~~~~~~~~~ 152 (197)
T 3lcy_A 78 YTCIATNEV----GEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM-YIGRPVPAMTWFHGQKLLQNSENITI 152 (197)
T ss_dssp EEEEEECSS----CEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEE-EEEESCCEEEEEETTEECCCCSSEEE
T ss_pred EEEEEECCC----CceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEE-EeeeeCCeeEEeECCEECCCCCceEE
Confidence 999998753 3355667777776543221 12234667789999999999 67899999999999988866555443
Q ss_pred eeecCCceEEEEEEEEEeeccC-cCCcEEEEEEEeCCCCceeEEEEEEEEE
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKE-HHNTTFTCQAQNTADRTYKVARLKLLVK 233 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~-~d~G~Y~C~a~n~~g~~~~s~~v~v~v~ 233 (1011)
..... .+.|.|.++.. +|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 153 ~~~~~------~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~ 195 (197)
T 3lcy_A 153 ENTEH------YTHLVMKNVQRKTHAGKYKVQLSNVFGTV--DAILDVEIQ 195 (197)
T ss_dssp EECSS------EEEEEESSCCHHHHCEEEEEEEECSSCEE--EEEEEEEEE
T ss_pred EEcCC------EEEEEEccccchhhCceEEEEEEcCcCce--EEEEEEEEe
Confidence 33222 26899999985 89999999999999976 445555543
No 136
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.84 E-value=8.4e-20 Score=191.89 Aligned_cols=183 Identities=19% Similarity=0.319 Sum_probs=143.4
Q ss_pred ecceeecC----CceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee----------ecCCCcEEEeecCCCCCEEEEE
Q psy17146 543 YGPRFRAR----PYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV----------VGNSPNLTLLMTSDDLAGRYYC 608 (1011)
Q Consensus 543 ~~P~~~~~----p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~----------~~~~~~L~I~~v~~~d~G~Y~C 608 (1011)
.+|.|..+ +....+.+|+++.|.|.+.+.|.+.+.|+|++..+. .....+|.|.+++.+|+|.|+|
T Consensus 10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 89 (241)
T 3grw_A 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 89 (241)
T ss_dssp -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence 46776644 457889999999999999999999999999985432 2345689999999999999999
Q ss_pred EEEecCCCceeeEEEEEEcC----CCeee--cCCceeeecCCcEEEEEEEEecCCCCeEEEEE----CCeEecccCCCCe
Q psy17146 609 KASVMGFPEVGAEATVYLKG----RPTII--SHRTQFGIPGDTARVECSAFSIPPPEKVTWSY----RGEEIGVGSSDDY 678 (1011)
Q Consensus 609 ~a~n~~~~~~s~~~~l~V~~----~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~----~g~~l~~~~~~~~ 678 (1011)
.|.| ..+.....+.|.|.. +|.+. .+....+..|+.++|.|.+.|.|.| .+.|++ +|..+.......+
T Consensus 90 ~~~~-~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p-~v~W~~~~~~~g~~~~~~~~~~~ 167 (241)
T 3grw_A 90 VVEN-KFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYV 167 (241)
T ss_dssp EEEE-TTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCC-EEEEEEECCSSSCSSCTTTCCCE
T ss_pred EEee-cCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCC-EEEEEEcccCCCcccCCCCceee
Confidence 9999 566777888888865 34443 2456778899999999999999999 999999 8887765333332
Q ss_pred EEecCC--cCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 679 SVLEDP--LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 679 ~~~~~~--~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
...... ......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 168 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 218 (241)
T 3grw_A 168 TVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218 (241)
T ss_dssp EEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--
T ss_pred eeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecC
Confidence 221110 0112357899999999999999999999999999999999853
No 137
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.84 E-value=3.6e-20 Score=188.17 Aligned_cols=175 Identities=15% Similarity=0.175 Sum_probs=130.1
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
.+|.|...|.. .+.+|++++|.|.+.+.|. .+.|+|++..+. ....+.|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (198)
T 1ugn_A 4 PKPTLWAEPGS-VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT 81 (198)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCeEeccCCC-cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCC
Confidence 36777777764 7899999999999999876 799999987652 3456889999999999999999999942
Q ss_pred --CCceeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccc
Q psy17146 615 --FPEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689 (1011)
Q Consensus 615 --~~~~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~ 689 (1011)
....+..+.|.|.. +|.+.......+.+|+.++|.|.+.+. .+ .+.|+|+|..+... ..++....+ .+.
T Consensus 82 ~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~-~~-~v~W~k~g~~~~~~-~~~~~~~~~---~~~ 155 (198)
T 1ugn_A 82 AGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA-FD-GFILCKEGEDEHPQ-CLNSQPHAR---GSS 155 (198)
T ss_dssp TEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSC-CS-EEEEEEC------C-EEEC---------CC
T ss_pred CCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCC-Cc-EEEEEECCCccCCc-cccccccCC---Ccc
Confidence 12456778888876 577765555678999999999999988 66 89999999887421 111111111 223
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCC-----eEEEEEEEe
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGS-----DSVEIMLKP 725 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~-----~~~~~~l~V 725 (1011)
...|.|.++..+|+|.|+|.|.|..+. .+..+.|.|
T Consensus 156 ~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 196 (198)
T 1ugn_A 156 RAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLV 196 (198)
T ss_dssp EEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred eeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEe
Confidence 579999999999999999999999772 255666655
No 138
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.84 E-value=2e-20 Score=188.94 Aligned_cols=174 Identities=25% Similarity=0.365 Sum_probs=139.5
Q ss_pred EEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee--------eccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 387 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 387 V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
+..+|.|...+.+..+.+|+++.|.|.+.|.|.+.+.|++++.... ......|.|.+++.+|+|.|+|.+.|
T Consensus 4 ~~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 83 (192)
T 2iep_A 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANN 83 (192)
T ss_dssp CCEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEEC
T ss_pred cCCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEc
Confidence 3457888888888999999999999999999999999999874422 23445699999999999999999997
Q ss_pred cCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEE
Q psy17146 459 MGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSET 538 (1011)
Q Consensus 459 ~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~ 538 (1011)
..+...+ ....
T Consensus 84 ~~~~~~~---------------------------------------------------------------------~~~~ 94 (192)
T 2iep_A 84 GVGGAVE---------------------------------------------------------------------SCGA 94 (192)
T ss_dssp SSSCCEE---------------------------------------------------------------------EEEE
T ss_pred CCCceeE---------------------------------------------------------------------eEEE
Confidence 4332222 2334
Q ss_pred EEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCce------eecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 539 LDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK------VVGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 539 l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
|.|..+|.+...+....+.+|+.++|.|.+.|.|.+.+.|++++..+ ....+++|.|.++..+|+|.|+|.|.|
T Consensus 95 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 174 (192)
T 2iep_A 95 LQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKN 174 (192)
T ss_dssp EEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEc
Confidence 55666777777788888999999999999999999999999998543 234567899999999999999999999
Q ss_pred cCCCce-eeEEEEEEcCCC
Q psy17146 613 MGFPEV-GAEATVYLKGRP 630 (1011)
Q Consensus 613 ~~~~~~-s~~~~l~V~~~P 630 (1011)
. .|.. +..+.|.|..||
T Consensus 175 ~-~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 175 S-LGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp T-TEEEECCCEEEEEEC--
T ss_pred C-CCcEEEEEEEEEEEeCC
Confidence 4 5554 667889888776
No 139
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=188.01 Aligned_cols=185 Identities=21% Similarity=0.322 Sum_probs=134.3
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|++++..+... ...|+.+..+ .+|.|.+++.+|+|.|
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~~~~~~~~-----~~L~i~~~~~~d~G~Y 72 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI----SDNRFAMLAN-----NNLQILNINKSDEGIY 72 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBC----CCTTEEECTT-----SCEEETTCCGGGCEEE
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceec----cCCeEEEecC-----CCEEEeeCCHhHCcEE
Confidence 478999999999999999999999987 66799999998765321 2346665432 2699999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEee
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEA 185 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~ 185 (1011)
+|.+.+...+ ......+.+.|..+|............+.+|+.+.|.|. +.+.|.+.+.|+|++..+....++...
T Consensus 73 ~C~~~~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~-~~g~p~~~v~W~~~g~~~~~~~~~~~~- 148 (189)
T 2v5t_A 73 RCEGRVEARG--EIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR-ASGSPEPAISWFRNGKLIEENEKYILK- 148 (189)
T ss_dssp EEEEEETTTT--EEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECE-EEEESCCEEEEEETTEECCCSSSEEEE-
T ss_pred EEEEEEcCCC--ceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEE-EccCCCCeEEEEECCEECcCCCcEEEe-
Confidence 9999986433 233455667776654221111112456788999999999 678899999999999887665544322
Q ss_pred ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEE
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLL 231 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~ 231 (1011)
.+. ++|.|.++..+|+|.|+|.|.|..|....+..+.|.
T Consensus 149 -~~~------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 187 (189)
T 2v5t_A 149 -GSN------TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187 (189)
T ss_dssp -TTT------TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -cCC------CEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence 122 379999999999999999999999977555555443
No 140
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.83 E-value=3.9e-20 Score=190.06 Aligned_cols=175 Identities=22% Similarity=0.370 Sum_probs=137.7
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----------ecCCCc-----EEEeecCCCCCEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----------VGNSPN-----LTLLMTSDDLAGRY 606 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----------~~~~~~-----L~I~~v~~~d~G~Y 606 (1011)
.+|.|...|.++.+.+|+.++|.|.+.+.|.+.+.|+|++..+. ...++. |.|.++..+|+|.|
T Consensus 8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 87 (212)
T 2v9r_A 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY 87 (212)
T ss_dssp EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence 57889999999999999999999999999999999999985432 122333 44456689999999
Q ss_pred EEEEEecCCCc-eeeEEEEEEcCC-Ceee-cCCceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEecccCCCCeEEec
Q psy17146 607 YCKASVMGFPE-VGAEATVYLKGR-PTII-SHRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLE 682 (1011)
Q Consensus 607 ~C~a~n~~~~~-~s~~~~l~V~~~-P~i~-~~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~ 682 (1011)
+|.|.|. .+. .+..+.|.|..+ +.+. .+....+..|+.++|.|.+ .|.|.| .+.|+++|..+... ..++....
T Consensus 88 ~C~~~n~-~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~v~W~~~~~~l~~~-~~~~~~~~ 164 (212)
T 2v9r_A 88 VCVARNY-LGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP-TISWKKDGSPLDDK-DERITIRG 164 (212)
T ss_dssp EEEEEET-TEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCC-EEEEEETTEEECTT-STTEEEET
T ss_pred EEEEECC-CCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCC-EEEEEECCccCCCC-cceEEccC
Confidence 9999994 443 355677777653 3333 4566779999999999998 899999 99999999998742 33443322
Q ss_pred CCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEE-EEEEEecCC
Q psy17146 683 DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV-EIMLKPQKS 728 (1011)
Q Consensus 683 ~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~~~ 728 (1011)
+.|.|.++..+|+|.|+|.|.|..|.... .+.|.|...
T Consensus 165 --------~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~ 203 (212)
T 2v9r_A 165 --------GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLER 203 (212)
T ss_dssp --------TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred --------CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeC
Confidence 58999999999999999999999998654 478887543
No 141
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=188.08 Aligned_cols=173 Identities=18% Similarity=0.201 Sum_probs=132.9
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee--------cCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------GNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|++..+.. ...+.|.|.+++.+|+|.|+|.|.|...
T Consensus 5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 82 (196)
T 3p2t_A 5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG 82 (196)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCc
Confidence 5777777877 8999999999999998 7789999999875431 3457899999999999999999999422
Q ss_pred -CceeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcccee
Q psy17146 616 -PEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691 (1011)
Q Consensus 616 -~~~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 691 (1011)
...+..+.|.|.. +|.+.......+.+|+.++|.|.+.+. .+ .+.|+|+|..+.... ....... ....+
T Consensus 83 ~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~-~~-~~~w~k~g~~~~~~~-~~~~~~~----~~~~~ 155 (196)
T 3p2t_A 83 WSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSP-MD-TFLLCKERAAHPLLC-LRSEHGA----QQHQA 155 (196)
T ss_dssp EBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEEE-EE-EEEEEETTCCCGGGS-EEEEEEE----EEEEE
T ss_pred ccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCCC-CC-EEEEEeCCCccccee-ecccccc----cCcce
Confidence 3557778888853 567765444578899999999999885 44 799999998775321 1111110 12357
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCC-----CeEEEEEEEe
Q psy17146 692 TLIIRESRHDHFGVYNCSVSNPYG-----SDSVEIMLKP 725 (1011)
Q Consensus 692 ~L~I~~~~~~d~G~Y~C~a~N~~G-----~~~~~~~l~V 725 (1011)
.|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|
T Consensus 156 ~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 194 (196)
T 3p2t_A 156 EFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV 194 (196)
T ss_dssp EEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred EEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence 899999999999999999999987 3445566655
No 142
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.83 E-value=9.8e-21 Score=188.35 Aligned_cols=167 Identities=15% Similarity=0.204 Sum_probs=133.2
Q ss_pred EecceeecCCceEEEcCCCcEEEEEEEecCCCC-eEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceee
Q psy17146 542 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGA 620 (1011)
Q Consensus 542 ~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~ 620 (1011)
..+|.+...|....+.+|++++|.|.+.+.+.+ .+.|+|++..+. ..++.|.|.+++.+|+|.|+|.|.| .. .+.
T Consensus 2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~~~~-~~--~s~ 77 (176)
T 1f2q_A 2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-ETNSSLNIVNAKFEDSGEYKCQHQQ-VN--ESE 77 (176)
T ss_dssp --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECS-CCSSEEEECSCCGGGCEEEEEECTT-SS--CCC
T ss_pred CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECC-CCceEEEEeccceecCEEEEEEcCC-cc--ccc
Confidence 356788888888899999999999999999886 699999986543 4578999999999999999999987 33 355
Q ss_pred EEEEEEcCCCeeecCCceeeecCCcEEEEEEEE-ecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 621 EATVYLKGRPTIISHRTQFGIPGDTARVECSAF-SIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 621 ~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
.+.|.|..++.+.......+.+|+.++|.|.+. +.|.+ .+.|+++|..+.... ..+.|.|.++.
T Consensus 78 ~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~--------------~~~~L~i~~v~ 142 (176)
T 1f2q_A 78 PVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVY-KVIYYKDGEALKYWY--------------ENHNISITNAT 142 (176)
T ss_dssp CEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCEE-EEEEEETTEECCSCC--------------CSSEEEESSCC
T ss_pred cEEEEEeCcceeecCCcceeeCCCCEEEEEEecCCCCce-EEEEEECCEEEeeec--------------CCCeEEECCCC
Confidence 677788777777655667788999999999995 55666 999999999885311 13689999999
Q ss_pred CCCCEEEEEEEEcCCC-CeEEEEEEEecC
Q psy17146 700 HDHFGVYNCSVSNPYG-SDSVEIMLKPQK 727 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~G-~~~~~~~l~V~~ 727 (1011)
.+|+|.|+|.|.|..| ..+..+.|.|..
T Consensus 143 ~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 171 (176)
T 1f2q_A 143 VEDSGTYYCTGKVWQLDYESEPLNITVIK 171 (176)
T ss_dssp GGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred cccCEEEEEEEEeCCcceEecCEEEEEec
Confidence 9999999999999754 456667887754
No 143
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.83 E-value=5e-20 Score=186.63 Aligned_cols=165 Identities=18% Similarity=0.321 Sum_probs=134.9
Q ss_pred cceEeeCCCceEecCCCcEEEEeecC-CCCCCceEEEeCCCceeec----------c--------CCcEEEEeeccCCCe
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVD-GNPAPEITWIHEDSDKVVG----------N--------SPNLTLLMTSDDLAG 450 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~-g~p~p~v~W~k~~~~~~~~----------~--------~~~L~I~~v~~~d~G 450 (1011)
+|.|...|.+..+.+|+++.|.|.+. |.|.+.+.|+|++..+... . ...|.|.+++.+|+|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 81 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence 67889999999999999999999998 9999999999998543211 1 357999999999999
Q ss_pred EEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCC
Q psy17146 451 RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDV 530 (1011)
Q Consensus 451 ~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~ 530 (1011)
.|+|.|.|..+...+
T Consensus 82 ~Y~C~~~~~~~~~~~----------------------------------------------------------------- 96 (195)
T 2c5d_C 82 QYQCLVFLGHQTFVS----------------------------------------------------------------- 96 (195)
T ss_dssp EEEEEEEETTEEEEC-----------------------------------------------------------------
T ss_pred EEEEEEEeCCCceec-----------------------------------------------------------------
Confidence 999999975332222
Q ss_pred CCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCC-eEEEEecCCceeec----CCCcEEEeecCCCCCEE
Q psy17146 531 GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKVVG----NSPNLTLLMTSDDLAGR 605 (1011)
Q Consensus 531 G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~k~~~~~~~~----~~~~L~I~~v~~~d~G~ 605 (1011)
..+.|.|..+|.+...|....+.+|+.+.|.|.+.|.|.| .+.|+|++..+... ..+.|.|.+++ |+|.
T Consensus 97 ----~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~--d~G~ 170 (195)
T 2c5d_C 97 ----QPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLN--KTSS 170 (195)
T ss_dssp ----CCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTSSCCEEEEECCCS--SCEE
T ss_pred ----ccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCcCCCCeEEEcccc--cCce
Confidence 2245566667777777888899999999999999999999 99999998765443 56789999887 8999
Q ss_pred EEEEEEecCCCce-eeEEEEEE
Q psy17146 606 YYCKASVMGFPEV-GAEATVYL 626 (1011)
Q Consensus 606 Y~C~a~n~~~~~~-s~~~~l~V 626 (1011)
|+|.|.| ..|.. +..+.|.|
T Consensus 171 Y~C~a~N-~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 171 FSCEAHN-AKGVTTSRTATITV 191 (195)
T ss_dssp EEEEEEE-TTEEEECCCEEEEE
T ss_pred EEEEEEc-CCCceEEEEEEEEE
Confidence 9999999 56666 47888888
No 144
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.83 E-value=6.5e-20 Score=186.60 Aligned_cols=169 Identities=20% Similarity=0.312 Sum_probs=134.1
Q ss_pred eecCCceEEEcCCCcEEEEEE-EecCCC-CeEEEEecCCcee---------ecCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCD-VDGNPA-PEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~-~~g~p~-p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
+...+..+.+.+|+.+.|.|. +.+.|. +.+.|+|++..+. ...+++|.|.+++.+|+|.|+|.|.|...
T Consensus 11 ~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~ 90 (201)
T 3s97_C 11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSI 90 (201)
T ss_dssp CSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGG
T ss_pred CcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCC
Confidence 334567899999999999999 899999 9999999986542 34567899999999999999999999322
Q ss_pred Cce--eeEEEEEEc-------CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc
Q psy17146 616 PEV--GAEATVYLK-------GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 616 ~~~--s~~~~l~V~-------~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
... ...+.+.+. .+|.+. ......+..|+.++|.|.+.|.|.| .+.|++++..+.. . ..+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~v~W~~~~~~~~~--~--~~~~~--- 162 (201)
T 3s97_C 91 TKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVP-DIRWRKVLEPMPS--T--AEIST--- 162 (201)
T ss_dssp TEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCC-EEEEEETTBCCCT--T--CEEET---
T ss_pred CcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCC-ceEEEeCCCcCCC--c--eeecC---
Confidence 221 223444442 345555 3457778999999999999999999 9999999997752 2 22222
Q ss_pred CccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 686 ~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
....|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 163 ---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 163 ---SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp ---TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ---CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 13689999999999999999999999999999999885
No 145
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.83 E-value=4.9e-20 Score=195.13 Aligned_cols=191 Identities=17% Similarity=0.252 Sum_probs=132.2
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCC------CCeeEEeeCCeecCC--------cccCCCCcceEEeecCCCceeEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDK------TGVLQWTKDDFALGP--------HRNLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~------~~~v~W~k~~~~l~~--------~~~~~~~~r~~i~~~~~~~~~~L 92 (1011)
.+.+...|..+.+.+|++|+|.|.+.+. .+.+.|+|++..... .......+|+.+.. ..+.++|
T Consensus 34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L 111 (252)
T 3bkj_L 34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG--SGTDFTL 111 (252)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEE
T ss_pred ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc--cCCEEEE
Confidence 4667777999999999999999999874 378999997521100 00111235777654 3467799
Q ss_pred EEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEe
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWID 170 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k 170 (1011)
+|.+++.+|+|.|+|.+.+.... ..+..+.|+|.....+|.+.. .+...+.+|+.+.|.|.+.+..|.+ +++|+|
T Consensus 112 ~I~~v~~~D~G~Y~C~~~~~~~~---~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k 188 (252)
T 3bkj_L 112 RISRVEAEDLGVYYCFQASLVPL---TFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI 188 (252)
T ss_dssp EESSCCGGGCEEEEEEECSBSSC---EECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EECCCCcccCEEEEEEEEcCCcc---EECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEE
Confidence 99999999999999999875321 223345788876554555542 2333344789999999955446664 899999
Q ss_pred CCceeeeceeEEE-eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 171 GTGTVMSNVRVTE-EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 171 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++..+..+..... ........+...+.|.|.++..+|+|.|+|.|.|.....
T Consensus 189 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 241 (252)
T 3bkj_L 189 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 241 (252)
T ss_dssp TTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred CCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence 9987755411111 111222345566889999999999999999999986654
No 146
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.83 E-value=8.2e-20 Score=185.18 Aligned_cols=177 Identities=13% Similarity=0.118 Sum_probs=120.0
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
.+|.|...|.. .+.+|++|+|.|.+.+....+.|+|++..+..... . ........+|.|.+++.+|+|.|
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~------~---~~~~~~~~~L~i~~v~~~D~G~Y 73 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQ------N---PLEPKNKARFSIPSMTEHHAGRY 73 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECCTTCCEEEEEETTCSSCSEEE------C---CCSSTTEEEEEESSCCGGGCEEE
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCCCCCcEEEEEECCCCCCcccc------c---ccCCccccEEEeccCChhHCeEE
Confidence 46888988875 89999999999999886669999999976532110 0 00123456899999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEee
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEA 185 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~ 185 (1011)
+|.+.+..+. ...+..+.|.|...+.+|.+...+...+.+|+.+.|.|. +.+.| +.+.|+|++..+........ .
T Consensus 74 ~C~a~n~~g~--~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~-~~~~p-~~~~W~k~g~~~~~~~~~~~-~ 148 (196)
T 2d3v_A 74 RCYYYSPAGW--SEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCG-SRLRF-DRFILTEEGDHKLSWTLDSQ-L 148 (196)
T ss_dssp EEEEEETTEE--CBCCCCEEEEEECSSCCCEEEC-----------CEEEEE-ESSCC-SEEEEEEC---CCEEEEECE-E
T ss_pred EEEEeCCCCc--CCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEE-cCCCC-CEEEEEccCCcccccccccc-c
Confidence 9999875321 123566888998866667776555567889999999999 67888 89999999987754222111 1
Q ss_pred ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
...+ .....|.|.+++.+|+|.|+|.|.|..+
T Consensus 149 ~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 149 TPSG---QFQALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp CTTS---CEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred ccCC---CceeEEEeeecCcccCeeEEEEEEccCC
Confidence 1111 1236899999999999999999999754
No 147
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.83 E-value=1.3e-19 Score=186.23 Aligned_cols=196 Identities=19% Similarity=0.271 Sum_probs=143.6
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCc------ccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPH------RNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~------~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
..|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+... .......|+.+.. .+|.|.+++.+
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~------~~L~i~~v~~~ 75 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS------SGITFSSVTRK 75 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET------TEEEESCCCGG
T ss_pred ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec------eeEEEcccCcc
Confidence 35777889999999999999999998 67799999998653110 0112234665543 48999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCc-eeeece
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTG-TVMSNV 179 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~-~l~~~~ 179 (1011)
|+|.|+|.+.+..+ ....+..+.|.|..+|..+.+... ..+.+|+.+.|.|.+..++|.+.+.|+|++. .+....
T Consensus 76 D~G~Y~C~~~~~~g--~~~~~~~~~l~V~~~p~~~~~~~~--~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~ 151 (212)
T 1f97_A 76 DNGEYTCMVSEEGG--QNYGEVSIHLTVLVPPSKPTISVP--SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADA 151 (212)
T ss_dssp GCEEEEEEEEETTS--SSEEEEEEEEEEEBCCCCCEEECC--SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC---
T ss_pred cCeEEEEEEEccCC--CcccEEEEEEEEEcCCCCcccCCc--cccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccc
Confidence 99999999998643 234577789999988877666443 4577899999999977899999999999998 765533
Q ss_pred eEEEeeecCCceE--EEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEe
Q psy17146 180 RVTEEASVDGRRT--TVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKY 234 (1011)
Q Consensus 180 ~~~~~~~~~~~~~--~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~ 234 (1011)
...... ...+.. ...+.|.|.+++.+|+|.|+|.|.|..|....+..+.|.|..
T Consensus 152 ~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 152 KKTRAF-MNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp --CBSC-SSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred cccccc-cCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 210000 000000 012479999999999999999999999987566777777753
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.83 E-value=2.6e-20 Score=207.44 Aligned_cols=178 Identities=20% Similarity=0.264 Sum_probs=147.5
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCE-EEEEEEEecC
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAG-RYYCKASVMG 614 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G-~Y~C~a~n~~ 614 (1011)
.+|.|...+.+..+.+|+.++|.|.+.|.|.+.+.|++++.... ....++|.|.++..+|+| .|+|.|.| .
T Consensus 157 ~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n-~ 235 (347)
T 2ifg_A 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEN-D 235 (347)
T ss_dssp CCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEE-T
T ss_pred CCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEc-C
Confidence 47888888888999999999999999999999999999986532 234578999999999999 99999999 5
Q ss_pred CCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEe--cC-CcCcccee
Q psy17146 615 FPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVL--ED-PLKEGIKS 691 (1011)
Q Consensus 615 ~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~--~~-~~~~~~~~ 691 (1011)
.+..+..+.|.|..+|.+ ....+..|+.++|.|.+.|.|.| .|+|+++|..+.. ....... .. .......+
T Consensus 236 ~g~~~~~~~l~V~~~P~i---~~~~~~~g~~v~l~C~~~g~P~p-~i~W~~~g~~l~~--~~~~~~~~~~~~~~~~~~~~ 309 (347)
T 2ifg_A 236 VGRAEVSVQVNVSFPASV---QLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNE--TSFIFTEFLEPAANETVRHG 309 (347)
T ss_dssp TEECCEEECCCCBEEEEE---EECCCEESSSEEEEEEEEEESCC-EEEEEETTEECCC--CSSEEEEECCCCTTCCCEEE
T ss_pred CCCEEEEEEEEEcCCCee---eeccCccCceEEEEEEeeecCCC-cEEEEeCCEECCC--CcceeeEEEeecCCCcccce
Confidence 677788899999999987 22235689999999999999999 9999999999873 2222221 10 01112367
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 692 TLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 692 ~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|.|.+++.+|+|.|+|.|.|.+|.+++++.|.|.+
T Consensus 310 ~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 345 (347)
T 2ifg_A 310 CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 345 (347)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred EEEECCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence 899999999999999999999999999999998854
No 149
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.82 E-value=4.5e-20 Score=184.91 Aligned_cols=168 Identities=16% Similarity=0.155 Sum_probs=131.4
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCC-CceeeE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGF-PEVGAE 621 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~-~~~s~~ 621 (1011)
.+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|++.. .....+.|.|.+++.+|+|.|+|.|.|... ...+..
T Consensus 7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~ 83 (184)
T 2gi7_A 7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS-RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQ 83 (184)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC-CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCC
T ss_pred CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc-ccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCC
Confidence 46777777775 7999999999999988 7889999999876 455678999999999999999999999322 345667
Q ss_pred EEEEEc---CCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 622 ATVYLK---GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 622 ~~l~V~---~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
+.|.|. .+|.|...+...+.+|+.++|.|.+.+.| + .+.|+|+|..+... ... ......|.|.++
T Consensus 84 ~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~-~-~~~w~k~g~~~~~~--~~~--------~~~~~~L~i~~v 151 (184)
T 2gi7_A 84 LELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGF-D-QFALYKEGDPAPYK--NPE--------RWYRASFPIITV 151 (184)
T ss_dssp EEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCC-C-EEEEEECCCCTTSC--CCC--------EEEEESSSEEEE
T ss_pred EEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCC-c-EEEEEECCCcCcce--ecC--------CCceEEEEEccC
Confidence 778884 36777654466788999999999987654 5 89999999887631 111 123478999999
Q ss_pred CCCCCEEEEEEEEcCCCC-----eEEEEEEEe
Q psy17146 699 RHDHFGVYNCSVSNPYGS-----DSVEIMLKP 725 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~~G~-----~~~~~~l~V 725 (1011)
+.+|+|.|+|.|.|..+. .+..+.|.|
T Consensus 152 ~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 183 (184)
T 2gi7_A 152 TAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV 183 (184)
T ss_dssp TTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred CccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence 999999999999998753 245555544
No 150
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.82 E-value=1.4e-20 Score=193.02 Aligned_cols=181 Identities=18% Similarity=0.310 Sum_probs=139.7
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----------------ecCCCcEEEeecCCCCCEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----------------VGNSPNLTLLMTSDDLAGRY 606 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----------------~~~~~~L~I~~v~~~d~G~Y 606 (1011)
++.|...+..+.+.+|+.+.|.|.+.+.|.+.+.|+|++..+. ....+.|.|.+++.+|+|.|
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y 83 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTY 83 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEE
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEE
Confidence 4566777888999999999999999999999999999986631 11237899999999999999
Q ss_pred EEEEEecC-CCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEecccCCCCeEEecC
Q psy17146 607 YCKASVMG-FPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLED 683 (1011)
Q Consensus 607 ~C~a~n~~-~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~ 683 (1011)
+|.|.|.. ....+..+.|.|..+|.+.. .....+..|+.++|.|.+ .|.|.| .+.|+++|..+.............
T Consensus 84 ~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~ 162 (209)
T 1nbq_A 84 TCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPS-EYTWFKDGIVMPTNPKSTRAFSNS 162 (209)
T ss_dssp EEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCC-EEEEEETTCCCCSCSSSSSSCTTC
T ss_pred EEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCc-eeEEEECCeeCCCccccceeeecc
Confidence 99999932 34566788889988888763 344568899999999997 899999 999999999887532211110000
Q ss_pred C-cCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe--EEEEEEEe
Q psy17146 684 P-LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD--SVEIMLKP 725 (1011)
Q Consensus 684 ~-~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~--~~~~~l~V 725 (1011)
. ......+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 163 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V 207 (209)
T 1nbq_A 163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207 (209)
T ss_dssp CCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred ceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence 0 001234789999999999999999999999988 44555554
No 151
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.82 E-value=3.9e-20 Score=190.30 Aligned_cols=169 Identities=16% Similarity=0.252 Sum_probs=132.1
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCC----CCeEEEEecCCc----------------e-----------ee------cCC
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNP----APEITWIHEDSD----------------K-----------VV------GNS 590 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p----~p~v~W~k~~~~----------------~-----------~~------~~~ 590 (1011)
...+..+.+.+|++++|.|.+.+.+ .+.+.|+|++.. . .. ...
T Consensus 4 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 83 (214)
T 3jz7_A 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGD 83 (214)
T ss_dssp --CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTB
T ss_pred ecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCc
Confidence 3445678899999999999999887 569999984311 1 11 135
Q ss_pred CcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeec-CCceeeecCCcEEEEEEE-EecCCCCeEEEEECCe
Q psy17146 591 PNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIIS-HRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGE 668 (1011)
Q Consensus 591 ~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~-~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~ 668 (1011)
.+|.|.+++.+|+|.|+|.|.| ..+..+..+.|.|..+|.+.. +....+..|+.++|.|.+ .|.|.| .+.|++++.
T Consensus 84 ~~L~i~~v~~~D~G~Y~C~~~~-~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~-~v~W~~~~~ 161 (214)
T 3jz7_A 84 ASINVTNLQLSDIGTYQCKVKK-APGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPL-QFEWQKLSD 161 (214)
T ss_dssp CCEEECSCCGGGCEEEEEEEEE-TTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSC-EEEEEECST
T ss_pred ccEEEccCChhhCeEEEEEEEe-CCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCC-EEEEEECCC
Confidence 7799999999999999999999 566778899999999888653 334447899999999999 899999 999999644
Q ss_pred EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.........+ ......|.|.++..+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus 162 ~~~~~~~~~~--------~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 211 (214)
T 3jz7_A 162 SQTMPTPWLA--------EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211 (214)
T ss_dssp TCCCCGGGGG--------GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred CCccCcccee--------ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence 3221111111 1123599999999999999999999999999999999885
No 152
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.82 E-value=1.4e-19 Score=185.42 Aligned_cols=167 Identities=17% Similarity=0.263 Sum_probs=133.8
Q ss_pred CCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC-------------------------ceeecCCCcEEEeecCCCCCE
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS-------------------------DKVVGNSPNLTLLMTSDDLAG 604 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~-------------------------~~~~~~~~~L~I~~v~~~d~G 604 (1011)
.+....+.+|++++|.|...+.+.+.+.|++++. +.....+++|.|.+++.+|+|
T Consensus 5 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G 84 (208)
T 3r4d_A 5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMG 84 (208)
T ss_dssp EEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCE
T ss_pred cCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCe
Confidence 3445678999999999999999999999998743 112233468999999999999
Q ss_pred EEEEEEEecCCCceeeEEEEEEcCC---CeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEe
Q psy17146 605 RYYCKASVMGFPEVGAEATVYLKGR---PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVL 681 (1011)
Q Consensus 605 ~Y~C~a~n~~~~~~s~~~~l~V~~~---P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~ 681 (1011)
.|+|.+.|...+..+..+.|.|..+ |.+...... +..|+.++|.|.+.+.| | .+.|+++|..+. ...++.+.
T Consensus 85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~~~~~p-p-~i~W~~~g~~l~--~~~~~~~~ 159 (208)
T 3r4d_A 85 VYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCLSNDIG-A-NIQWLFNSQSLQ--LTERMTLS 159 (208)
T ss_dssp EEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEECSCTT-C-EEEEEETTEECC--CCSSEEEE
T ss_pred EEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEECCCCC-C-ceEEEECCEeCC--CCCCeEEc
Confidence 9999999954567778888888766 566654444 88999999999999976 7 899999999987 44566654
Q ss_pred cCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEEEecC
Q psy17146 682 EDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLKPQK 727 (1011)
Q Consensus 682 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~ 727 (1011)
.+ ...|.|.++..+|+|.|+|.|.|.+|+. +..++|.|..
T Consensus 160 ~~------~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~ 200 (208)
T 3r4d_A 160 QN------NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF 200 (208)
T ss_dssp TT------TTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-
T ss_pred CC------CCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEe
Confidence 42 2689999999999999999999999975 4567776643
No 153
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.82 E-value=4.3e-19 Score=180.48 Aligned_cols=191 Identities=19% Similarity=0.278 Sum_probs=136.1
Q ss_pred ceeecCCceeEE-ecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 29 KFAMEPQDQTAV-VGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 29 ~~~~~p~~~~v~-~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
++.+.|.+..+. +|++|+|.|.+.+ +.+.+.|+++... .+ ..+.... ....+|.|.+++.+|+|.|+
T Consensus 2 ~v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~-----~~--~~~~~~~----~~~~~L~I~~v~~~D~G~Y~ 70 (202)
T 1vca_A 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS-----PL--NGKVTNE----GTTSTLTMNPVSFGNEHSYL 70 (202)
T ss_dssp EEEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCC-----CC--SSEEEEE----TTEEEEEESSCCGGGCSEEE
T ss_pred eEEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCC-----Cc--cceEEEc----CCccEEEECcCCHHHCEEEE
Confidence 466777775554 9999999999995 7778999984311 01 1122211 13457999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC--cEEEEEeCCceeeeceeEEEe
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP--AEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
|.+.|.. +..+..+.|+|..+|..+.+... ..+.+|+.++|.|.+.++.|. ++|+|+|++..+.... +..
T Consensus 71 C~a~n~~----~~~~~~~~l~V~~~p~~~~~~~~--~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~-~~~- 142 (202)
T 1vca_A 71 CTATCES----RKLEKGIQVEIYSFPKDPEIHLS--GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQE-FLE- 142 (202)
T ss_dssp EEEEETT----EEEEEEEEEEEEBCCSCCEEEES--SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEE-CCS-
T ss_pred EEEEECC----ceEeeEEEEEEEeCCCCCEeCCc--eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccc-ccc-
Confidence 9999863 34577899999998877776654 567899999999995544564 4899999998765431 100
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc-----eeEEEEEEEEEeCCce
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT-----YKVARLKLLVKYAPKV 238 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~-----~~s~~v~v~v~~~P~~ 238 (1011)
.............|.|.....+|+|.|+|+|.|..+.. ..+..+.|.|.++|..
T Consensus 143 ~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~~ 201 (202)
T 1vca_A 143 DADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKN 201 (202)
T ss_dssp CCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC--
T ss_pred ccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCCC
Confidence 00001123345678899999999999999999988763 2567788899888853
No 154
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.82 E-value=2.3e-20 Score=189.25 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=121.6
Q ss_pred CcccccCCcEEEEEE---eecCCCccEEEEEECCeecCC-------------------------CcCccEEEEeeccccc
Q psy17146 312 SNRLVEGTDVRLYCK---AEANPSHMKYRWYINDQPVPA-------------------------AASATELYLTNITRHQ 363 (1011)
Q Consensus 312 ~~~v~~g~~v~l~C~---~~~~p~~~~i~W~k~g~~l~~-------------------------~~~~~~L~I~~~~~~~ 363 (1011)
+..+..|++++|.|. +.+.|.+ .++|+|+|..+.. ......|.|.+++.+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~-~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~- 79 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEI-EVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANIS- 79 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTS-EEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGG-
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCc-EEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHH-
Confidence 457889999999995 5566775 9999998753211 123457999999998
Q ss_pred CCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCce----------ee
Q psy17146 364 HDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDK----------VV 433 (1011)
Q Consensus 364 d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~----------~~ 433 (1011)
|+|.|+|.|.|..|..+..+.|.|..+|.+...+.+..+.+|+++.|.|.+.|.|.|.|+|++++... ..
T Consensus 80 D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~ 159 (203)
T 4fa8_A 80 HDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMK 159 (203)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEE
T ss_pred HCeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEE
Confidence 99999999999999999999999999999998888889999999999999999999999999876422 23
Q ss_pred ccCCcEE---EEeeccCCCeEEEEEEEEcCCcc
Q psy17146 434 GNSPNLT---LLMTSDDLAGRYYCKASVMGFPE 463 (1011)
Q Consensus 434 ~~~~~L~---I~~v~~~d~G~Y~C~a~n~~~~~ 463 (1011)
..++.|. |.++..+|+|.|+|.|.|..+..
T Consensus 160 ~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a 192 (203)
T 4fa8_A 160 EKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 192 (203)
T ss_dssp CTTSCEEEEEEEEECSSCCCCEEEEEESSSCEE
T ss_pred eCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE
Confidence 3345554 46899999999999999976543
No 155
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.82 E-value=6.4e-20 Score=181.23 Aligned_cols=163 Identities=18% Similarity=0.296 Sum_probs=133.7
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCC-CCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEA 622 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p-~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~ 622 (1011)
.|.+...|....+.+|+.++|.|.+.+.| .+.+.|+|++..+. .....+.|.+++.+|+|.|+|.|.|. ..+..+
T Consensus 4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~-~~~~~~~~~~~~~~d~G~Y~C~~~~~---~~s~~~ 79 (170)
T 3ry4_A 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP-THTQPSYRFKANNNDSGEYTCQTGQT---SLSDPV 79 (170)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECT-TCCSSEEEEECCGGGCEEEEEEETTS---BCCCCE
T ss_pred CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcc-cCccceEEEecccccCeEEEEEEeCC---CceEeE
Confidence 35566677778899999999999999997 67999999886543 34567889999999999999999872 345568
Q ss_pred EEEEcCCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 623 TVYLKGRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 623 ~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
.|.|..+|.+.......+.+|+.++|.|.+.+. |.+ .+.|+++|..+.... ....|.|.++..+
T Consensus 80 ~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~g~~~~~~~--------------~~~~L~i~~v~~~ 144 (170)
T 3ry4_A 80 HLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLV-KVTFFQNGKSQKFSH--------------LDPTFSIPQANHS 144 (170)
T ss_dssp EEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEE-EEEEEETTEEEEEES--------------SCCEEEESSCCGG
T ss_pred EEEEECCceEecCCCceeecCCeEEEEEECCCCCCCc-eEEEEECCeEccccC--------------CCCeEEEEecccc
Confidence 888988888776667778899999999999554 556 999999999876311 1368999999999
Q ss_pred CCEEEEEEEEcCCCC-eEEEEEEEe
Q psy17146 702 HFGVYNCSVSNPYGS-DSVEIMLKP 725 (1011)
Q Consensus 702 d~G~Y~C~a~N~~G~-~~~~~~l~V 725 (1011)
|+|.|+|.|.|..|. .+..+.|.|
T Consensus 145 d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 145 HSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCEEEEEEEEeCcCccccccEEEEE
Confidence 999999999999996 566677765
No 156
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.82 E-value=1.6e-19 Score=183.92 Aligned_cols=159 Identities=15% Similarity=0.309 Sum_probs=133.9
Q ss_pred cccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecce
Q psy17146 313 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPR 392 (1011)
Q Consensus 313 ~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~ 392 (1011)
..+.+|+.++|.|.+.+.|.+..+.|+|+|..+... ...|.|.+++.+ |+|.|+|.+.| +..+..+.|.|..+|.
T Consensus 17 ~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~--~~~L~i~~v~~~-D~G~Y~C~a~n--~~~s~~~~l~V~~~p~ 91 (204)
T 3sgj_C 17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ--ASSYFIDAATVD-DSGEYRCQTQL--STLSDPVQLEVHIGWL 91 (204)
T ss_dssp SEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC--SSEEEESSCCGG-GCEEEEEEETT--SBCCCCEEEEEECSSE
T ss_pred eEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC--ccEEEEeccccc-CCEEEEEEeCC--CcccccEEEEEecCce
Confidence 679999999999999999877569999999998763 389999999998 99999999987 4556788899998887
Q ss_pred EeeCCCceEecCCCcEEEEeecCCC-CCCceEEEeCCCcee-eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEE
Q psy17146 393 FRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDSDKV-VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 470 (1011)
Q Consensus 393 ~~~~p~~~~v~~G~~v~l~C~~~g~-p~p~v~W~k~~~~~~-~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v 470 (1011)
+...+. ..+.+|+.++|.|.+.+. |.+.+.|+|++.... ......|.|.+++.+|+|.|+|.|.|......+..+.|
T Consensus 92 ~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l 170 (204)
T 3sgj_C 92 LLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQI 170 (204)
T ss_dssp EEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred EecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEE
Confidence 766665 678899999999999655 668999999997653 44578899999999999999999999666778888888
Q ss_pred EEcCCCe
Q psy17146 471 YLKGRPT 477 (1011)
Q Consensus 471 ~v~~~p~ 477 (1011)
.|..+|.
T Consensus 171 ~V~~~~~ 177 (204)
T 3sgj_C 171 TITQGLA 177 (204)
T ss_dssp EEEC---
T ss_pred EEeCcCC
Confidence 8876554
No 157
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.82 E-value=1.1e-19 Score=181.72 Aligned_cols=178 Identities=26% Similarity=0.300 Sum_probs=132.0
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+... .+..+..+......+|.|.+++.+|+|.|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 75 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL------DQLYIPVSEQHWIGFLSLKSVERSDAGRY 75 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSS------EEEEEEEETTEEEEEEEESSCCGGGCEEE
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCC------CceEEEecCCCceEEEEEeecCcccCeEE
Confidence 477889999999999999999999997 66799999999776432 34444444434457899999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCceeeeceeEEEe
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~~~~~~~ 184 (1011)
+|.+.+... ...+..+.|.|..+|. ....+....+.+|+.+.|.|. +.+.|.+ .+.|+|++..+.....
T Consensus 76 ~C~~~~~~~---~~~~~~~~l~V~~~p~--~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~~v~W~~~~~~~~~~~~---- 145 (182)
T 1rhf_A 76 WCQVEDGGE---TEISQPVWLTVEGVPF--FTVEPKDLAVPPNAPFQLSCE-AVGPPEPVTIVWWRGTTKIGGPAP---- 145 (182)
T ss_dssp EEEESSCTT---CEECCCEEEEEECSCE--EEECCCCEEECTTCCEEEEEE-EECSSSCCEEEEEETTEECSCSEE----
T ss_pred EEEEEcCCC---cEEEEEEEEEEecCCe--EEecCcceEecCCCEEEEEeE-ecCCCCCCEEEEEcCCeECCCCCC----
Confidence 999988532 2345678888887542 233345677889999999999 6789999 9999999877744321
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v 232 (1011)
....|.|.++ +|+|.|+|.|.|..|... +..+.|.|
T Consensus 146 ---------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~-s~~~~l~V 181 (182)
T 1rhf_A 146 ---------SPSVLNVTGV--TQSTMFSCEAHNLKGLAS-SRTATVHL 181 (182)
T ss_dssp ---------SSEEEEECCC--SSCEEEEEEEEETTEEEE-CCCEEEEE
T ss_pred ---------CceEEEEecc--ccCeEEEEEEECCCCCcc-cceEEEEe
Confidence 1258999887 589999999999988652 23444443
No 158
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.82 E-value=1.2e-19 Score=186.57 Aligned_cols=176 Identities=14% Similarity=0.138 Sum_probs=127.3
Q ss_pred CCceEEEcCC--CcEEEEEEEecCCCCeEEEEec---CC------ceeecCCCcEEEeecCCCCCEEEEEEEEecCCCce
Q psy17146 550 RPYSVQVDRG--AGVNLLCDVDGNPAPEITWIHE---DS------DKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEV 618 (1011)
Q Consensus 550 ~p~~~~v~~G--~~~~l~C~~~g~p~p~v~W~k~---~~------~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~ 618 (1011)
.|..+.+.+| ++++|.|.+.+ |.+.+.|+++ +. .........|.|.+++.+|+|.|+|.|.|.+....
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~ 91 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ 91 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEE
T ss_pred CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEE
Confidence 4578899999 99999999986 7799999885 31 12234457899999999999999999998433344
Q ss_pred eeEEEEEEcC--CCeee-cC-CceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEecccCCCC-eEEecCCcC---ccc
Q psy17146 619 GAEATVYLKG--RPTII-SH-RTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVGSSDD-YSVLEDPLK---EGI 689 (1011)
Q Consensus 619 s~~~~l~V~~--~P~i~-~~-~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~~~~~-~~~~~~~~~---~~~ 689 (1011)
+..+.|.|.. +|.+. .+ ....+.+|++++|.|.+.|.|. +..+.|+++|..+... .. ......... ...
T Consensus 92 s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~--~~~~~~~~~~~~~~~~~~ 169 (213)
T 2x1w_L 92 SIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK--KLVNRDLKTQSGSEMKKF 169 (213)
T ss_dssp CCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSE--EEEEEEECCCSSCSCEEE
T ss_pred EEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceE--EEeccccccccCccceee
Confidence 4457777754 34443 33 3447999999999999999764 2379999998875321 00 000000000 223
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
.+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.|.+.
T Consensus 170 ~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~ 208 (213)
T 2x1w_L 170 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHED 208 (213)
T ss_dssp EEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC-
T ss_pred eEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecc
Confidence 568999999999999999999999999999999998653
No 159
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.82 E-value=1.4e-19 Score=184.03 Aligned_cols=175 Identities=17% Similarity=0.135 Sum_probs=127.6
Q ss_pred cCCce-EEEcCCCcEEEEEEEecCCCCeEEEEecCCc------eeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeE
Q psy17146 549 ARPYS-VQVDRGAGVNLLCDVDGNPAPEITWIHEDSD------KVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAE 621 (1011)
Q Consensus 549 ~~p~~-~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~------~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~ 621 (1011)
..|.+ ..+.+|+.++|.|.+.|.|.|.+.|+++... ......+.|.|.+++.+|+|.|+|.|.| ..+..+..
T Consensus 5 i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-~~~~~~~~ 83 (202)
T 1vca_A 5 TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATC-ESRKLEKG 83 (202)
T ss_dssp EESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEE-TTEEEEEE
T ss_pred ECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEE-CCceEeeE
Confidence 33444 4455999999999999999999999995311 1233456799999999999999999999 56677889
Q ss_pred EEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCC--CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 622 ATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPP--EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 622 ~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p--~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
+.|.|..+|... ......+.+|+.++|.|.+.|.+++ ..|+|+|+|..+...... ... ...........|.|...
T Consensus 84 ~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~-~~~-~~~~~~~~~~~l~i~~~ 161 (202)
T 1vca_A 84 IQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL-EDA-DRKSLETKSLEVTFTPV 161 (202)
T ss_dssp EEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECC-SCC-SSCCCEEEEEEEEECCC
T ss_pred EEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccc-ccc-CcCcceEEEEEEEEEee
Confidence 999998876532 1222568999999999999987542 279999999988642100 000 00000122456788988
Q ss_pred CCCCCEEEEEEEEcCCCC-------eEEEEEEEec
Q psy17146 699 RHDHFGVYNCSVSNPYGS-------DSVEIMLKPQ 726 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~~G~-------~~~~~~l~V~ 726 (1011)
..+|.|.|+|.|.|.+|. .+.++.|.|.
T Consensus 162 ~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~ 196 (202)
T 1vca_A 162 IEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVY 196 (202)
T ss_dssp GGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEE
T ss_pred eccCCCeEEEEEEccccCCCCcceeEeeEEEEEEe
Confidence 888999999999999986 3456677664
No 160
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.82 E-value=5.1e-20 Score=189.20 Aligned_cols=200 Identities=17% Similarity=0.209 Sum_probs=139.2
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
..+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|++++..+........ .+.....++......|.|.+++.+|+|
T Consensus 7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G 85 (212)
T 2v9r_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPR-SHRMLLPSGSLFFLRIVHGRKSRPDEG 85 (212)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTT-CSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred cCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccc-cceEEecCCcEEEEEEEecCCCcccCe
Confidence 45799999999999999999999999986 6779999999987754322111 111222222111224667788999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEE
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~ 183 (1011)
.|+|.+.+..+ ...+..+.|.|...+.. ....+....+.+|+.+.|.|.+..+.|.+.+.|+|++..+.....
T Consensus 86 ~Y~C~~~n~~g---~~~~~~~~l~V~~~~~~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~--- 158 (212)
T 2v9r_A 86 VYVCVARNYLG---EAVSHDASLEVAILRDD-FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDE--- 158 (212)
T ss_dssp EEEEEEEETTE---EEECCCEEEEECEECSS-CSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTST---
T ss_pred EEEEEEECCCC---ceeecceEEEEEecccc-ceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcc---
Confidence 99999998532 12244567777654432 223344667889999999999448999999999999887754321
Q ss_pred eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceE
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~ 239 (1011)
+.....+.|.|.+++.+|+|.|+|.|.|..|.. .+..+.|.|..+|.+.
T Consensus 159 ------~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~s~~~~l~V~~~P~~~ 207 (212)
T 2v9r_A 159 ------RITIRGGKLMITYTRKSDAGKYVCVGTNMVGER-ESEVAELTVLERPSFV 207 (212)
T ss_dssp ------TEEEETTEEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEEC-----
T ss_pred ------eEEccCCeEEEeeCCHhhCeeEEEEEecccCce-ecceEEEEEEeCchHh
Confidence 111222479999999999999999999998864 2334777888777654
No 161
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.82 E-value=2.1e-19 Score=182.17 Aligned_cols=176 Identities=14% Similarity=0.164 Sum_probs=131.3
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
..|.|...|.. .+.+|++|+|.|.+.++.+.+.|+|++..+..... .. .......+|.|.+++.+|+|.|
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~------~~---~~~~~~~~L~i~~v~~~D~G~Y 73 (196)
T 3p2t_A 4 PKPTLWAEPGS-VISWGNSVTIWCQGTLEAREYRLDKEESPAPWDRQ------NP---LEPKNKARFSIPSMTEDYAGRY 73 (196)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTTCCEEEEEETTSCSCSEEE------CC---CSSSSEEEEEESSCCGGGCEEE
T ss_pred CCCEEEccCCC-cCCCCCcEEEEeeCCCCCCEEEEEECCCCCccccc------cc---ccCCceEEEEeccCCcccCceE
Confidence 35788888888 89999999999999998889999999976632111 00 0112456899999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEee
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEA 185 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~ 185 (1011)
+|.+.|..+ ....+..+.|.|...+.+|.+...+...+.+|+.++|.|. +.+ +.+.+.|+|++..+..........
T Consensus 74 ~C~a~n~~g--~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~-~~~-~~~~~~w~k~g~~~~~~~~~~~~~ 149 (196)
T 3p2t_A 74 RCYYRSPVG--WSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQ-SRS-PMDTFLLCKERAAHPLLCLRSEHG 149 (196)
T ss_dssp EEEEEETTE--EBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEE-EEE-EEEEEEEEETTCCCGGGSEEEEEE
T ss_pred EEEEeCCCc--ccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEe-cCC-CCCEEEEEeCCCcccceeeccccc
Confidence 999998642 1134667888898776677776554446789999999999 445 456899999988764432211100
Q ss_pred ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
.....+.|.|.+++.+|+|.|+|.|.|..+
T Consensus 150 -----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 150 -----AQQHQAEFPMSPVTSVHGGTYRCFSSHGFS 179 (196)
T ss_dssp -----EEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred -----ccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence 112346899999999999999999999876
No 162
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.82 E-value=1.2e-19 Score=187.01 Aligned_cols=172 Identities=16% Similarity=0.177 Sum_probs=132.6
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee--------cCCC--cEEEeecCCCCCEEEEEEEEe
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------GNSP--NLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--------~~~~--~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
.+|.|...|. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+.. ...+ .|.|.+++.+|+|.|+|.|.|
T Consensus 8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 85 (218)
T 1uct_A 8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI 85 (218)
T ss_dssp CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEc
Confidence 3677877777 57899999999999987 6789999999876531 2345 899999999999999999999
Q ss_pred cC-CCceeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcc
Q psy17146 613 MG-FPEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688 (1011)
Q Consensus 613 ~~-~~~~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~ 688 (1011)
.. ....+..+.|.|.+ +|.|...+...+.+|+.++|.|.+.+.|.+ .+.|+|+|..+.. . ... ..
T Consensus 86 ~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~-~~~W~k~g~~~~~---~-~~~------~~ 154 (218)
T 1uct_A 86 GHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFD-RFSLAKEGELSLP---Q-HQS------GE 154 (218)
T ss_dssp TTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCCS-EEEEEETTCSSCC---S-EEE------CS
T ss_pred CCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCCC-EEEEEECCCcccc---c-ccC------CC
Confidence 42 23455667888865 677765556678999999999977777777 9999999987653 1 111 12
Q ss_pred ceeEEEEcCCCCCCCEEEEEEEEcCCC-----CeEEEEEEEecC
Q psy17146 689 IKSTLIIRESRHDHFGVYNCSVSNPYG-----SDSVEIMLKPQK 727 (1011)
Q Consensus 689 ~~~~L~I~~~~~~d~G~Y~C~a~N~~G-----~~~~~~~l~V~~ 727 (1011)
....|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|.+
T Consensus 155 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g 198 (218)
T 1uct_A 155 HPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD 198 (218)
T ss_dssp SSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred ccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence 347999999999999999999998642 345667777754
No 163
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.81 E-value=1e-19 Score=193.56 Aligned_cols=207 Identities=15% Similarity=0.196 Sum_probs=123.2
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCe-eEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~-v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
+.+.|+++.|.+|++++|+|++..+.+. +.|.-.-... . . .....+...|.|.+++.+ |.|+|+
T Consensus 2 ~~v~P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~---~-~---------~~~g~~~~~~~l~~v~~~--~~y~C~ 66 (291)
T 1mq8_A 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKK---E-L---------LLPGNNRKVYELSNVQED--SQPMCY 66 (291)
T ss_dssp EEEECSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCC---C-C---------CCSCSSEEEEEEESCCSC--CCCEEE
T ss_pred eEEeCCccEEcCCCeEEEEEeCCCCCCccceEEecCCCc---c-c---------ccCCCceEEEEEEecccC--CeEEEE
Confidence 5678899999999999999999877665 8886421100 0 0 000112225788998854 579999
Q ss_pred EEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCc--EEEEEeCCceeeeceeEEEeee
Q psy17146 109 VSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPA--EITWIDGTGTVMSNVRVTEEAS 186 (1011)
Q Consensus 109 ~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~--~i~W~k~~~~l~~~~~~~~~~~ 186 (1011)
+.... ...+..+.|+|+.+|..+.|...+ ..+.+|+.++|+|.+.++.|.. +|+|||+++++.....
T Consensus 67 ~~~~~----~~~~~~v~l~V~~~P~~v~I~~~~-~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~------ 135 (291)
T 1mq8_A 67 SNCPD----GQSTAKTFLTVYWTPERVELAPLP-SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA------ 135 (291)
T ss_dssp EECSS----CEEEEECEEEECBCCSCCCBCCCC-SBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC------
T ss_pred EEcCC----ccEEEEEEEEEecCCCCCEEecCC-ccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC------
Confidence 97532 246778899999999988887653 3467899999999988888865 6999999988755321
Q ss_pred cCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC------ceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEc
Q psy17146 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR------TYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKA 260 (1011)
Q Consensus 187 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~------~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~ 260 (1011)
.... ...+|.+...+.+|.+.|+|+|.|..+. ...+....|.|.++|........+..+.+|+.++|.|.+
T Consensus 136 -~~~~--~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~ 212 (291)
T 1mq8_A 136 -VGEP--AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSL 212 (291)
T ss_dssp -CBTT--EEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC----------------------------
T ss_pred -CCCC--ceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEc
Confidence 1111 2357888888888888999999987552 123555677777776543332222244555555555555
Q ss_pred ccCCC
Q psy17146 261 EANPS 265 (1011)
Q Consensus 261 ~~~~~ 265 (1011)
.+.++
T Consensus 213 ~g~~P 217 (291)
T 1mq8_A 213 DGLFP 217 (291)
T ss_dssp -----
T ss_pred CCCCC
Confidence 55433
No 164
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.81 E-value=2.3e-19 Score=182.91 Aligned_cols=171 Identities=17% Similarity=0.183 Sum_probs=130.1
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCC-----CeEEEEecCCc-------ee-ec-----CCCcEEEeecCCCCCEEEEE
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPA-----PEITWIHEDSD-------KV-VG-----NSPNLTLLMTSDDLAGRYYC 608 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~-----p~v~W~k~~~~-------~~-~~-----~~~~L~I~~v~~~d~G~Y~C 608 (1011)
+..++..+.+.+|+++.|.|.+.+.|. +.+.|+|++.. .. .. ...+|.|.+++.+|+|.|+|
T Consensus 5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 84 (202)
T 3bp6_B 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRC 84 (202)
T ss_dssp EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEE
T ss_pred EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEE
Confidence 344556788999999999999999987 89999993321 11 11 23689999999999999999
Q ss_pred EEEecCCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcc
Q psy17146 609 KASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688 (1011)
Q Consensus 609 ~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~ 688 (1011)
.|.| ..+..+..+.|.|..++.........+..|+.++|.|.+.|.|.| .++|++++..+.. ..... ..+
T Consensus 85 ~~~~-~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~v~l~C~~~g~P~p-~v~W~~~~~~~~~----~~~~~----~~~ 154 (202)
T 3bp6_B 85 LVIC-GAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLA-EVSWQNVSVPANT----SHIRT----PEG 154 (202)
T ss_dssp EEEE-TTEEEEEEEEEEEEBCCCCEEEEEEECTTTCCEEEEEEEEEBSCC-EEEETTCCSCCEE----EEEEC----TTS
T ss_pred EEEe-CCCcceEEEEEEecCCCCcccEEEEecCCCCeEEEEEEccccCCc-eEEEEeCCCCccC----ceeeC----CCC
Confidence 9999 566668888999987653221122245689999999999999999 9999998876531 11111 134
Q ss_pred ceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 689 IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 689 ~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
....+.|.++..+|.|.|+|.|.|..|..+..+.|.|.+
T Consensus 155 ~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~~ 193 (202)
T 3bp6_B 155 LYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLS 193 (202)
T ss_dssp CEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC--
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEecC
Confidence 456778889999999999999999999999999998754
No 165
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.81 E-value=7.1e-19 Score=177.27 Aligned_cols=159 Identities=18% Similarity=0.260 Sum_probs=130.6
Q ss_pred CCccccc-CCcEEEEEEeecCCC-ccEEEEEECCeecCCCc---CccEEEEeecccccCCcEEEEEEEcCCccceeeEEE
Q psy17146 311 GSNRLVE-GTDVRLYCKAEANPS-HMKYRWYINDQPVPAAA---SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETL 385 (1011)
Q Consensus 311 ~~~~v~~-g~~v~l~C~~~~~p~-~~~i~W~k~g~~l~~~~---~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l 385 (1011)
....+.+ |+.++|.|.+.+.+. ...+.|+|+|..+.... ....|.|.++..+ |+|.|+|.|.|. |..+..+.|
T Consensus 10 ~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~~~n~-~~~~~~~~l 87 (190)
T 2wv3_A 10 EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAE-DSGEYHCVYHFV-SAPKANATI 87 (190)
T ss_dssp CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCCSEEEEEESSCCGG-GCEEEEEEEEET-TEEEEEEEE
T ss_pred ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEeccEEEEEecCCcc-cCEEEEEEEEeC-CcccccEEE
Confidence 4456667 999999999999885 34899999999987642 3578999999998 999999999999 888899999
Q ss_pred EEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeC--CCcee---------ec---cCCcEEEEeec-cCCCe
Q psy17146 386 DVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE--DSDKV---------VG---NSPNLTLLMTS-DDLAG 450 (1011)
Q Consensus 386 ~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~--~~~~~---------~~---~~~~L~I~~v~-~~d~G 450 (1011)
.|..+|.+...+....+.+|+.+.|.|.+.|+|.+.+.|+++ +.... .. ....|.|.+++ .+|+|
T Consensus 88 ~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G 167 (190)
T 2wv3_A 88 EVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPG 167 (190)
T ss_dssp EEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCE
T ss_pred EEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCE
Confidence 999999999888888999999999999999999999999994 32211 11 11269999999 79999
Q ss_pred EEEEEEEEcCCcceeeEEEEEE
Q psy17146 451 RYYCKASVMGFPEVGAEATVYL 472 (1011)
Q Consensus 451 ~Y~C~a~n~~~~~~s~~~~v~v 472 (1011)
.|+|.|.|..+ .....+.|.|
T Consensus 168 ~Y~C~a~N~~g-~~~~~~~l~V 188 (190)
T 2wv3_A 168 EYECNATNSIG-SASVSTVLRV 188 (190)
T ss_dssp EEEEEEECSSC-EEEEEEEEEE
T ss_pred EEEEEEEecCC-cceeEEEEEE
Confidence 99999999643 3445555544
No 166
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.81 E-value=2.7e-19 Score=186.52 Aligned_cols=202 Identities=15% Similarity=0.219 Sum_probs=142.3
Q ss_pred ceeeccceeecC----CceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 23 AQYREQKFAMEP----QDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 23 ~~~~~p~~~~~p----~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
....+|.|...+ ..+.+.+|++++|.|.+.+ +.+.+.|+|++..+....... +..+. .+..+|.|.++
T Consensus 11 ~~~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~---~~~~~----~~~~~L~i~~~ 83 (231)
T 3ojm_B 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKVR----NQHWSLIMESV 83 (231)
T ss_dssp --CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTT---CCEEE----GGGTEEEECSC
T ss_pred CCccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCcccccccccc---ceeee----cCcceEEEecC
Confidence 445678887766 7899999999999999987 667999999998775332221 11221 23458999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCC-Ceeec--CCeeeecCCCcEEEEEEccCCCCCcEEEEEe----
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDP-PRIVQ--GDTLYTTEDREIELECISANGKPPAEITWID---- 170 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~-~~i~~--~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k---- 170 (1011)
+.+|+|.|+|.+.+.. +..+..+.|.|...+.. +.+.. +....+.+|+.+.|.|. +.+.|.+.+.|+|
T Consensus 84 ~~~d~G~Y~C~~~n~~----~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~-~~~~p~p~v~W~~~~~~ 158 (231)
T 3ojm_B 84 VPSDKGNYTCVVENEY----GSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCK-VYSDAQPHIQWIKHVEK 158 (231)
T ss_dssp CGGGCEEEEEEEEETT----EEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECC-EECSSCCEEEEEEECCB
T ss_pred CcccCEEEEEEEeccc----CcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEE-EecCCCCEEEEEECCCC
Confidence 9999999999999853 34567788888876542 33322 34677889999999999 6789999999999
Q ss_pred CCceeeecee-EEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCce
Q psy17146 171 GTGTVMSNVR-VTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKV 238 (1011)
Q Consensus 171 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~ 238 (1011)
++..+..+.. ...............++|.|.++..+|+|.|+|.|.|..|.. +..+.|.|...|..
T Consensus 159 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~~ 225 (231)
T 3ojm_B 159 NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA--NQSAWLTVLPKQQA 225 (231)
T ss_dssp TTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEE--EEEEEEEEECCC--
T ss_pred CCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceE--eeEEEEEEecCCCC
Confidence 6665543211 111111111111112479999999999999999999998876 66667777766643
No 167
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.81 E-value=1.1e-19 Score=180.70 Aligned_cols=169 Identities=18% Similarity=0.238 Sum_probs=130.4
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCC--eeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTG--VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~--~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.|.|...|..+.+.+|++++|.|.+.+... .+.|+|++..+.. +..+|.|.+++.+|+|.
T Consensus 4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~------------------~~~~L~i~~v~~~d~G~ 65 (176)
T 1f2q_A 4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------------------TNSSLNIVNAKFEDSGE 65 (176)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC------------------CSSEEEECSCCGGGCEE
T ss_pred CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC------------------CceEEEEeccceecCEE
Confidence 578999999999999999999999987433 6999999976531 23479999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
|+|.+.+.. .+..+.|.|.. ++.+...+...+.+|+.+.|.|.+..+.|.+.+.|+|++..+...
T Consensus 66 Y~C~~~~~~------~s~~~~l~V~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~------ 130 (176)
T 1f2q_A 66 YKCQHQQVN------ESEPVYLEVFS---DWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW------ 130 (176)
T ss_dssp EEEECTTSS------CCCCEEEEEEC---SSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC------
T ss_pred EEEEcCCcc------ccccEEEEEeC---cceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee------
Confidence 999997642 24557778873 233333445677899999999995567888899999988766321
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCc
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK 237 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~ 237 (1011)
.. .+.|.|.+++.+|+|.|+|.|.|..+. ..+..+.|.|..+|.
T Consensus 131 --~~------~~~L~i~~v~~~d~G~Y~C~a~n~~~~-~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 131 --YE------NHNISITNATVEDSGTYYCTGKVWQLD-YESEPLNITVIKAPR 174 (176)
T ss_dssp --CC------SSEEEESSCCGGGCEEEEEEEEETTEE-EECCCEEEEEECSCC
T ss_pred --cC------CCeEEECCCCcccCEEEEEEEEeCCcc-eEecCEEEEEecCCC
Confidence 11 148999999999999999999997443 345667888877764
No 168
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.81 E-value=2e-20 Score=195.51 Aligned_cols=190 Identities=16% Similarity=0.255 Sum_probs=109.0
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCC--------cccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGP--------HRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~--------~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.+.+...|..+.+.+|++|+|.|.+.+ +.+.+.|+|++..... .......+|+.+.. ..+.++|+|.++
T Consensus 23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v 100 (233)
T 3bqu_C 23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG--YGTDFVFTIENM 100 (233)
T ss_dssp CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE--EEEEEEEC----
T ss_pred ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec--cCCEEEEEECCC
Confidence 456777799999999999999999987 4568999986421110 00011124555432 235668999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCcee
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWIDGTGTV 175 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l 175 (1011)
+.+|+|.|+|.+.+..... .+..+.|+|...+.+|.+.. .+...+.+|+.+.|.|.+.+..|++ +++|+|++..+
T Consensus 101 ~~~D~G~Y~C~~~~~~~~~---~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~ 177 (233)
T 3bqu_C 101 LSEDVADYYCLQSDNLPYT---FGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 177 (233)
T ss_dssp -CCCCSEEEEEECSSSSCC---BCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC----
T ss_pred CHHHCEEEEEEEecCCcee---ecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeC
Confidence 9999999999998754221 22335677776555555542 3333344699999999954445654 89999999877
Q ss_pred eec-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 176 MSN-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 176 ~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
..+ .............+...+.|.|.++..+|+|.|+|.|.|....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 178 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp -CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred CCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 654 2211111122234556688999999999999999999997554
No 169
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.81 E-value=4.7e-19 Score=181.44 Aligned_cols=188 Identities=18% Similarity=0.262 Sum_probs=139.1
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcc-------------cCCCCcceEEeecCCCceeEEEEe
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHR-------------NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~-------------~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
|.++|..+.+.+|++|+|.|...+ +...+.|++++....... .....+|+.+.. +.+|.|.
T Consensus 2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~-----~~~L~i~ 76 (208)
T 3r4d_A 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS-----NGSLLFQ 76 (208)
T ss_dssp CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECT-----TSCEEEC
T ss_pred ccccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEec-----CCeEEEc
Confidence 567777889999999999999765 456999999864321110 001124555542 2379999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCcee
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTV 175 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l 175 (1011)
+++.+|+|.|+|.+.+... ...+..+.|.|..++..+.+...... +.+|+.+.|.|. +.+.| +.+.|+|++..+
T Consensus 77 ~v~~~D~G~Y~C~~~~~~~---~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~-~~~~p-p~i~W~~~g~~l 150 (208)
T 3r4d_A 77 MITMKDMGVYTLDMTDENY---RRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCL-SNDIG-ANIQWLFNSQSL 150 (208)
T ss_dssp SCCGGGCEEEEEEEECSSC---EEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEE-CSCTT-CEEEEEETTEEC
T ss_pred cccccCCeEEEEEEEcccC---ceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEE-CCCCC-CceEEEECCEeC
Confidence 9999999999999988632 34667788999988877777765544 889999999999 66766 799999999887
Q ss_pred eeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCc
Q psy17146 176 MSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPK 237 (1011)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~ 237 (1011)
..+.++... .++ ++|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|..+|.
T Consensus 151 ~~~~~~~~~--~~~------~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~s~~~~l~v~~~~~ 203 (208)
T 3r4d_A 151 QLTERMTLS--QNN------SILRIDPIKREDAGEYQCEISNPVSVR-RSNSIKLDIIFDPH 203 (208)
T ss_dssp CCCSSEEEE--TTT------TEEEESSCCGGGCEEEEEEEECTTCCE-ECCCEEECCC----
T ss_pred CCCCCeEEc--CCC------CEEEEeccCHHhCeEEEEEEecCCCcc-cCCceeeeEEeCCc
Confidence 655444322 222 379999999999999999999999976 46677777766654
No 170
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.81 E-value=9.7e-19 Score=180.16 Aligned_cols=191 Identities=23% Similarity=0.307 Sum_probs=138.1
Q ss_pred cCCceeEEecCcEEEEEEEcCC-CC---eeEEeeCCeecCCccc------------CCCCcceEEeecC-CCceeEEEEe
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK-TG---VLQWTKDDFALGPHRN------------LSGFDRYAMIGSD-EEGDYSLEIY 95 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~-~~---~v~W~k~~~~l~~~~~------------~~~~~r~~i~~~~-~~~~~~L~I~ 95 (1011)
.|+.+++.+|++|+|.|.+.+. .+ .|.|+|++..+..... .....|+.+.... ..+.++|+|.
T Consensus 5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~ 84 (218)
T 4frw_A 5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR 84 (218)
T ss_dssp CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence 4678999999999999999873 33 4899998865432110 0112344443322 3456789999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCcee
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTV 175 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l 175 (1011)
+++.+|+|.|+|.+.+... ........+.+..++ .+.+.......+.+|+.+.|.|. +.+.|+|.|+|+|++..+
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~c~-~~g~p~p~i~W~~~~~~~ 159 (218)
T 4frw_A 85 NAVQADEGEYECRVSTFPA---GSFQARLRLRVLVPP-LPSLNPGPALEEGQGLTLAASCT-AEGSPAPSVTWDTEVKGT 159 (218)
T ss_dssp SCCGGGCEEEEEEEEEETT---EEEEEEEEEEEEBCC-CCEEEECSCEETTCCSEEEEEEE-EEEBSCCEEEEEESSCCE
T ss_pred eccHHHCCceeEEEEeccC---ceeeeEEEEEEeeec-cceeeeeeeeeeeeccccceeee-ccCCcCceEEEEECCccc
Confidence 9999999999999987532 223344445555443 34444555677788999999999 779999999999999887
Q ss_pred eeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEE
Q psy17146 176 MSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233 (1011)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~ 233 (1011)
....... ..+.....+.|.|.++..+|+|.|+|.|.|..|.......+.|.|.
T Consensus 160 ~~~~~~~-----~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V~ 212 (218)
T 4frw_A 160 TSSRSFK-----HSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHVS 212 (218)
T ss_dssp EEEEEEE-----CSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCEE
T ss_pred ccCceEe-----cCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEEC
Confidence 6644432 2223445678999999999999999999999998877777777664
No 171
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.81 E-value=2.8e-19 Score=189.01 Aligned_cols=178 Identities=20% Similarity=0.340 Sum_probs=130.5
Q ss_pred eecCCceEEEcCCCcEEEEEEEec---CCCCeEEEEecCCce----eec-------------------------------
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDG---NPAPEITWIHEDSDK----VVG------------------------------- 588 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g---~p~p~v~W~k~~~~~----~~~------------------------------- 588 (1011)
+..++..+.+.+|++++|.|.+.+ .|.+.+.|+|++... ...
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 84 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 84 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence 345566889999999999999998 888999999987432 000
Q ss_pred ---CCCcEEEeecCCCCCEEEEEEEEecCCC----ceeeEEEEEEcCC---Ceee--cCCceeeecCCcEEEEEEEEecC
Q psy17146 589 ---NSPNLTLLMTSDDLAGRYYCKASVMGFP----EVGAEATVYLKGR---PTII--SHRTQFGIPGDTARVECSAFSIP 656 (1011)
Q Consensus 589 ---~~~~L~I~~v~~~d~G~Y~C~a~n~~~~----~~s~~~~l~V~~~---P~i~--~~~~~~v~~G~~v~L~C~~~g~p 656 (1011)
...+|.|.+++.+|+|.|+|.|.|.... ..+..+.|.|..+ |.+. .+....+.+|+.++|.|.+.|.|
T Consensus 85 ~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p 164 (250)
T 2fbo_J 85 ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCA 164 (250)
T ss_dssp SCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCT
T ss_pred ccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCC
Confidence 1358999999999999999999983221 1356888998774 3443 34456678899999999999999
Q ss_pred CCCeEEEEECCeEecccCCCCeEEe-----------cCCcCc----cceeEEEEcCCCCCCCEEEEEEEEcCCC---CeE
Q psy17146 657 PPEKVTWSYRGEEIGVGSSDDYSVL-----------EDPLKE----GIKSTLIIRESRHDHFGVYNCSVSNPYG---SDS 718 (1011)
Q Consensus 657 ~p~~v~W~~~g~~l~~~~~~~~~~~-----------~~~~~~----~~~~~L~I~~~~~~d~G~Y~C~a~N~~G---~~~ 718 (1011)
.| .|+|+|++..+.......+... ...... .....|.|.++..+|+|.|+|.|.|.+| .+.
T Consensus 165 ~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~ 243 (250)
T 2fbo_J 165 NA-NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR 243 (250)
T ss_dssp TC-EEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEE
T ss_pred CC-eeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccc
Confidence 99 9999999988764322211111 000000 0126899999999999999999999554 666
Q ss_pred EEEEEEe
Q psy17146 719 VEIMLKP 725 (1011)
Q Consensus 719 ~~~~l~V 725 (1011)
.++.|.|
T Consensus 244 ~~~~l~V 250 (250)
T 2fbo_J 244 SSTILKV 250 (250)
T ss_dssp EEEEEEC
T ss_pred eeEEEeC
Confidence 6666653
No 172
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.81 E-value=1.5e-19 Score=185.90 Aligned_cols=177 Identities=18% Similarity=0.244 Sum_probs=130.3
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC--Cce------------------e---ecCCCcEEEeecCCC
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED--SDK------------------V---VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~--~~~------------------~---~~~~~~L~I~~v~~~ 601 (1011)
|.+...| .+.+.+|++++|.|.+.+.+.+.+.|+|.. ... . .....+|.|.+++.+
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 80 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG 80 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence 4566677 899999999999999999999999999932 111 1 223457999999999
Q ss_pred CCEEEEEEEEecCC--CceeeEEEEEEc----CCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEeccc
Q psy17146 602 LAGRYYCKASVMGF--PEVGAEATVYLK----GRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVG 673 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~--~~~s~~~~l~V~----~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~ 673 (1011)
|+|.|+|.|.|... ......+.|.|. .+|.+.. +....+..|+.++|.|.+.|. |++..|+|+|||..+..+
T Consensus 81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~ 160 (213)
T 3mj8_L 81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQG 160 (213)
T ss_dssp GCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred hCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCC
Confidence 99999999999432 245667788887 6787763 344445589999999999996 443489999999998642
Q ss_pred CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 674 SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
.........+ ......+.|.|.++..+|.|.|+|.|+|..|....++.+
T Consensus 161 ~~~~~~~~~~-~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~ 209 (213)
T 3mj8_L 161 VKTTQPSKSD-SKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLSP 209 (213)
T ss_dssp EEECCCEEET-TEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEECC
T ss_pred cccCCcCccC-CcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeecc
Confidence 1100001010 001124679999999999999999999999877766643
No 173
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.81 E-value=6.2e-19 Score=177.31 Aligned_cols=182 Identities=15% Similarity=0.150 Sum_probs=131.8
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQ 106 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~ 106 (1011)
.|.|...|.. .+.+|++|+|.|.+.+....+.|+|++..+..... +. .......+|.|.+++.+|+|.|+
T Consensus 4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~-----~~----~~~~~~~~L~I~~v~~~D~G~Y~ 73 (188)
T 1oll_A 4 KPFIWAEPHF-MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRP-----KP----PERINKVKFYIPDMNSRMAGQYS 73 (188)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCTTCCEEEEEETTEEEEEECC-----SS----CTTCCEEEEEESSCCGGGCEEEE
T ss_pred CCEEEeecCC-cCCCCCCEEEEEecCCCCCEEEEEECCCccccccc-----cc----CCCcceeEEEeCcCCcccCeEEE
Confidence 5788888887 89999999999999876678999999976531100 00 01224558999999999999999
Q ss_pred EEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeee
Q psy17146 107 CQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEAS 186 (1011)
Q Consensus 107 C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~ 186 (1011)
|.+.+... ....+..+.|.|.....+|.+...+...+.+|+.+.|.|. +.+ +.+.+.|+|++..+..... .
T Consensus 74 C~~~~~~~--~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~-~~~-~~~~~~w~k~g~~~~~~~~-----~ 144 (188)
T 1oll_A 74 CIYRVGEL--WSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCR-LDT-ATSMFLLLKEGRSSHVQRG-----Y 144 (188)
T ss_dssp EEEEETTE--ECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEE-CSS-SCSEEEEEEESSSCEEEEE-----E
T ss_pred EEecCCCC--CCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEE-cCC-CCCEEEEEECCcccccccc-----C
Confidence 99987421 1123566888888766566766544566889999999999 544 4569999999877654111 1
Q ss_pred cCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC-CceeEEEEEEEE
Q psy17146 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD-RTYKVARLKLLV 232 (1011)
Q Consensus 187 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g-~~~~s~~v~v~v 232 (1011)
.. ....|.|.+++.+|+|.|+|.|.|... ....+..+.|.|
T Consensus 145 ~~-----~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V 186 (188)
T 1oll_A 145 GK-----VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV 186 (188)
T ss_dssp CS-----SEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred CC-----ceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEe
Confidence 11 136899999999999999999998752 122345555555
No 174
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.81 E-value=5.6e-19 Score=183.54 Aligned_cols=171 Identities=15% Similarity=0.164 Sum_probs=120.4
Q ss_pred CceEEEcCCCcEEEEEEEecCCCC---eEEEEecCCceee-----------------------------cCCCcEEEeec
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNPAP---EITWIHEDSDKVV-----------------------------GNSPNLTLLMT 598 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p~p---~v~W~k~~~~~~~-----------------------------~~~~~L~I~~v 598 (1011)
++.+.+.+|++++|.|.+.+.+.+ .|.|+|++..... ..+.+|+|.++
T Consensus 11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v 90 (226)
T 4f80_A 11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV 90 (226)
T ss_dssp SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSC
T ss_pred CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeC
Confidence 446889999999999999887665 7999998743210 11347999999
Q ss_pred CCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCC
Q psy17146 599 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDD 677 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~ 677 (1011)
+.+|+|.|+|.|.| +.+.....+.+.+..++.. ......+.+|+.+.|.|.+.|. |.| .|+|++++..+.......
T Consensus 91 ~~~D~G~Y~C~a~n-~~~~~~~~v~~~~~~~~~~-~~~~~~~~~g~~v~l~c~~~g~~P~p-~i~W~k~~~~~~~~~~~~ 167 (226)
T 4f80_A 91 TASDSGKYLCYFQD-GDFYEKALVELKVAALGSD-LHVDVKGYKDGGIHLECRSTGWYPQP-QIQWSNNKGENIPTVEAP 167 (226)
T ss_dssp CGGGCEEEEEEEEE-TTEEEEEEEEEEEEBCCCC-CEEEEEEEETTEEEEEEEEEEEBSCC-EEEEECTTSCBCCCEECC
T ss_pred chHHCeeEEEEEEC-CCcEEEEEEEEeeccceec-ccceeeeccCCceeeEEEeccCCCCC-EEEEEECCceEcCCCceE
Confidence 99999999999999 5555555555554333222 2334567889999999999985 888 999999764443212222
Q ss_pred eEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 678 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
+.... ++....+.+.++..+|.|.|+|.|+|.+|..++++.|.|.++
T Consensus 168 ~~~~~----~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep 214 (226)
T 4f80_A 168 VVADG----VGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP 214 (226)
T ss_dssp CEECT----TSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred EEECC----CCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence 22111 333445556667889999999999999999999999988654
No 175
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.81 E-value=2.4e-19 Score=182.13 Aligned_cols=190 Identities=15% Similarity=0.148 Sum_probs=129.4
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
.+|.|...|.. .+.+|++|+|.|.+.+....+.|+|++..+..... .+.. .....+|.|.+++.+|+|.|
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~~~~~~----~~~~-----~~~~~~L~i~~v~~~D~G~Y 73 (198)
T 1ugn_A 4 PKPTLWAEPGS-VITQGSPVTLRCQGGQETQEYRLYREKKTAPWITR----IPQE-----LVKKGQFPIPSITWEHTGRY 73 (198)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTTCCCEEEEESSSCCHHHHT----SCHH-----HHTTTEEEESSCCGGGCEEE
T ss_pred CCCeEeccCCC-cccCCCcEEEEEEecCCCcEEEEEECCcccccccc----cccc-----CCcccEEEECCCCHHHCeEE
Confidence 46888888874 89999999999999886668999999976531110 0000 01234799999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEee
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEA 185 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~ 185 (1011)
+|.+.|...+ ....+..+.|.|...+.+|.+...+...+.+|+.+.|.|. +.+. .+.+.|+|++..+........ .
T Consensus 74 ~C~a~n~~~g-~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~-~~~~-~~~v~W~k~g~~~~~~~~~~~-~ 149 (198)
T 1ugn_A 74 RCYYGSDTAG-RSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCD-SQVA-FDGFILCKEGEDEHPQCLNSQ-P 149 (198)
T ss_dssp EEEEEETTTE-ECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEE-CSSC-CSEEEEEEC------CEEEC---
T ss_pred EEEEECCCCC-cccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEe-cCCC-CcEEEEEECCCccCCcccccc-c
Confidence 9999885311 0123566889998866667776555567889999999999 5566 679999999887644221100 0
Q ss_pred ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc---eeEEEEEEEE
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT---YKVARLKLLV 232 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~---~~s~~v~v~v 232 (1011)
..++ .....|.|.+++.+|+|.|+|.|.|..+.. ..+..+.|.|
T Consensus 150 ~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 196 (198)
T 1ugn_A 150 HARG---SSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLV 196 (198)
T ss_dssp -------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred cCCC---cceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEe
Confidence 0000 013689999999999999999999987632 2245555554
No 176
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.81 E-value=4.5e-19 Score=186.78 Aligned_cols=230 Identities=14% Similarity=0.106 Sum_probs=137.5
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
..|.|...|. ..+.+|++|+|.|.+..+...+.|+|++..+...... .+. .......+|.|.+++.+|+|.|
T Consensus 6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~~~~~~~W~k~g~~~~~~~~~---~~~----~~~~~~~~L~I~~v~~~DsG~Y 77 (257)
T 1b6u_A 6 RKPSLLAHPG-PLVKSEETVILQCWSDVRFQHFLLHREGKFKDTLHLI---GEH----HDGVSKANFSIGPMMQDLAGTY 77 (257)
T ss_dssp CCCEECCBSC-SEEESSCCEEEEEEESSCCSEEEEEEESTTCEEEEEE---CBC----CTTCEEEEEEECSCCTTTCEEE
T ss_pred CCCEEEEcCC-CEecCCCCEEEEEecCCCCcEEEEEECCCCCCcceee---eec----cCCCceEEEEeecCCcccCEEE
Confidence 4577888887 7899999999999998777799999998654211000 000 0122456899999999999999
Q ss_pred EEEEEeCCCC-CcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe
Q psy17146 106 QCQVSTGILG-EPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 106 ~C~~~~~~~~-~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
+|.+.+.... .....+..+.|.|.....+|.+...+...+.+|++++|.|. +.+.| +.|.|+|+++.+........
T Consensus 78 ~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~-~~~~~-~~~~w~k~g~~~~~~~~~~~- 154 (257)
T 1b6u_A 78 RCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCS-SRSSY-DMYHLSREGEAHERRFSAGP- 154 (257)
T ss_dssp EEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEE-CSSCC-SEEEEEETTSSCEECCBCBC-
T ss_pred EEeEeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEe-CCCCC-cEEEEEECCcccCccccccc-
Confidence 9999864321 12235677899999877777776555556889999999999 55554 69999999987754322110
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC---CceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcc
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD---RTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAE 261 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g---~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~ 261 (1011)
...+ .....|.|.+++ |+|.|+|.|.+... ....+..+.|.|...|......+.......|..+.|.|.+.
T Consensus 155 -~~~~---~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~~ 228 (257)
T 1b6u_A 155 -KVNG---TFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAE 228 (257)
T ss_dssp -CSSS---CCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-------------------------
T ss_pred -ccCC---ceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEEc
Confidence 1111 013589999998 99999999997643 22346678888888776542111122455688899998776
Q ss_pred cCCCccEEEEEeC
Q psy17146 262 ANPSHMKYRWYIN 274 (1011)
Q Consensus 262 ~~~~~~~i~W~~~ 274 (1011)
..- ..+.|..-
T Consensus 229 ~~~--~~~~~~~~ 239 (257)
T 1b6u_A 229 QKL--ISEEDLNL 239 (257)
T ss_dssp -------------
T ss_pred chH--HHHHHhhh
Confidence 544 46777653
No 177
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.80 E-value=6.6e-19 Score=174.87 Aligned_cols=156 Identities=15% Similarity=0.305 Sum_probs=130.3
Q ss_pred cccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEEecce
Q psy17146 313 NRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVTYGPR 392 (1011)
Q Consensus 313 ~~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~ 392 (1011)
..+.+|+.++|.|.+.+.|.+..+.|+|+|..+.. ....|.|.+++.+ |+|.|+|.+.|..+ +..+.|.|..++.
T Consensus 17 ~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~--~~~~L~i~~~~~~-d~G~Y~C~~~n~~~--s~~~~l~V~~~~~ 91 (175)
T 1fnl_A 17 YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS--QASSYFIDAATVN-DSGEYRCQTNLSTL--SDPVQLEVHIGWL 91 (175)
T ss_dssp SEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES--SCSEEEESSCCGG-GCEEEEEECSSSCC--CCCEEEEEECSSE
T ss_pred eeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC--CceEEEEeCCCcc-cCEEEEEEeeCCcc--cccEEEEEeCCCc
Confidence 47999999999999999987756899999998864 5679999999998 99999999998544 5677888886665
Q ss_pred EeeCCCceEecCCCcEEEEeecCCCCCC-ceEEEeCCCcee-eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEE
Q psy17146 393 FRARPYSVQVDRGAGVNLLCDVDGNPAP-EITWIHEDSDKV-VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATV 470 (1011)
Q Consensus 393 ~~~~p~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~~~~~~-~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v 470 (1011)
+... ....+.+|+.+.|.|.+.+.|++ .+.|+|++.... ......|.|.+++.+|+|.|+|.|.|..+...+..+.|
T Consensus 92 ~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l 170 (175)
T 1fnl_A 92 LLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170 (175)
T ss_dssp EEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred eeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCCCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEE
Confidence 5444 34678899999999999887665 999999987654 33578899999999999999999999766677778888
Q ss_pred EEcC
Q psy17146 471 YLKG 474 (1011)
Q Consensus 471 ~v~~ 474 (1011)
.|.+
T Consensus 171 ~V~~ 174 (175)
T 1fnl_A 171 TITQ 174 (175)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7754
No 178
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.80 E-value=1.6e-18 Score=180.02 Aligned_cols=184 Identities=19% Similarity=0.281 Sum_probs=118.9
Q ss_pred CCceeEEecCcEEEEEEEcCC-CC---eeEEeeCCeecC-----------CcccCCCCcceEEeecC-CCceeEEEEeec
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK-TG---VLQWTKDDFALG-----------PHRNLSGFDRYAMIGSD-EEGDYSLEIYPV 97 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~-~~---~v~W~k~~~~l~-----------~~~~~~~~~r~~i~~~~-~~~~~~L~I~~v 97 (1011)
++.+.+.+|++|+|.|.+.+. .+ .|.|+|++.... .........|....... ..+.++|+|.++
T Consensus 11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v 90 (226)
T 4f80_A 11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV 90 (226)
T ss_dssp SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSC
T ss_pred CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeC
Confidence 356899999999999999763 22 699999874321 11112223455554433 456789999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS 177 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~ 177 (1011)
+.+|+|.|+|.+.|.. +..+..+.+.+...+..+ .....+.+|+.+.|.|.+.++.|.|+|+|+|+++.+..
T Consensus 91 ~~~D~G~Y~C~a~n~~----~~~~~~v~~~~~~~~~~~----~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~ 162 (226)
T 4f80_A 91 TASDSGKYLCYFQDGD----FYEKALVELKVAALGSDL----HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP 162 (226)
T ss_dssp CGGGCEEEEEEEEETT----EEEEEEEEEEEEBCCCCC----EEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred chHHCeeEEEEEECCC----cEEEEEEEEeeccceecc----cceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcC
Confidence 9999999999999853 233333444443332222 22456678999999999655579999999998877665
Q ss_pred ceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEE
Q psy17146 178 NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLK 229 (1011)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~ 229 (1011)
..........++ .+. .+.+..++.+|+|.|+|.|.|..|....+..+.
T Consensus 163 ~~~~~~~~~~~g-~~~---v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~ 210 (226)
T 4f80_A 163 TVEAPVVADGVG-LYA---VAASVIMRGSSGEGVSCTIRSSLLGLEKTASIS 210 (226)
T ss_dssp CEECCCEECTTS-CEE---EEEEEEECC----CEEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEECCCC-cEE---EEEEEEechhcCcEEEEEEEeCCCCeEEEEEEE
Confidence 443332333333 222 233445678999999999999999875544443
No 179
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.80 E-value=2.3e-19 Score=180.46 Aligned_cols=168 Identities=19% Similarity=0.175 Sum_probs=129.0
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee--------ecCCCcEEEeecCCCCCEEEEEEEEec-C
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VGNSPNLTLLMTSDDLAGRYYCKASVM-G 614 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~n~-~ 614 (1011)
+|.|...|.. .+.+|++++|.|.+.+. .+.+.|+|++.... ...++.|.|.+++.+|+|.|+|.|.|. +
T Consensus 4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~ 81 (188)
T 1oll_A 4 KPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL 81 (188)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCC
Confidence 5777777776 79999999999999764 47899999986543 234578999999999999999999983 2
Q ss_pred CCceeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCcccee
Q psy17146 615 FPEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKS 691 (1011)
Q Consensus 615 ~~~~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 691 (1011)
....+..+.|.|.+ +|.|...+...+.+|+.++|.|.+.+ +.+ .+.|+|+|..+.. .... .....
T Consensus 82 ~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~-~~~w~k~g~~~~~----~~~~------~~~~~ 149 (188)
T 1oll_A 82 WSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDT-ATS-MFLLLKEGRSSHV----QRGY------GKVQA 149 (188)
T ss_dssp ECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSS-SCS-EEEEEEESSSCEE----EEEE------CSSEE
T ss_pred CCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCC-CCC-EEEEEECCccccc----cccC------CCcee
Confidence 23456777888864 67777545567899999999999876 446 8999999987653 1111 22357
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCC---CeEEEEEEEe
Q psy17146 692 TLIIRESRHDHFGVYNCSVSNPYG---SDSVEIMLKP 725 (1011)
Q Consensus 692 ~L~I~~~~~~d~G~Y~C~a~N~~G---~~~~~~~l~V 725 (1011)
.|.|.+++.+|+|.|+|.|.|... ..+..+.|.|
T Consensus 150 ~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V 186 (188)
T 1oll_A 150 EFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV 186 (188)
T ss_dssp EEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred EEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEe
Confidence 999999999999999999998752 3455566655
No 180
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.80 E-value=6.4e-19 Score=189.76 Aligned_cols=190 Identities=13% Similarity=0.163 Sum_probs=126.4
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCee--cC--Cc---------ccCCCCcceEEeecCCCceeE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFA--LG--PH---------RNLSGFDRYAMIGSDEEGDYS 91 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~--l~--~~---------~~~~~~~r~~i~~~~~~~~~~ 91 (1011)
+.+...|..+.+.+|++|+|.|.+.+. .+.+.|+|++.. +. .. ......+|+.+..+...+.++
T Consensus 27 ~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 106 (282)
T 1qok_A 27 QVKLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAY 106 (282)
T ss_dssp CCEEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEE
T ss_pred eEEEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEE
Confidence 345667889999999999999999864 468999997521 10 00 001123688887655556789
Q ss_pred EEEeecccCCCceEEEEEEeCCCC-CcceeeeEEEEEEEcCCC------------CCeee-cCCeeeecCCCcEEEEEEc
Q psy17146 92 LEIYPVMLDDDARYQCQVSTGILG-EPAIRSRFATLTVLVPPD------------PPRIV-QGDTLYTTEDREIELECIS 157 (1011)
Q Consensus 92 L~I~~v~~~D~G~Y~C~~~~~~~~-~~~~~s~~~~l~V~~~p~------------~~~i~-~~~~~~v~eg~~v~L~C~~ 157 (1011)
|+|.+++.+|+|.|+|.+.+..+. ........+.|+|...+. ++.+. .+..+.+.+|+.++|.|.
T Consensus 107 L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~- 185 (282)
T 1qok_A 107 LQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCS- 185 (282)
T ss_dssp EEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEE-
T ss_pred EEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEE-
Confidence 999999999999999999986421 111233456788887652 33333 345777899999999999
Q ss_pred cCCCCCcEEEEEe--CCceeeec--eeEEEeeecCCceEE----EEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 158 ANGKPPAEITWID--GTGTVMSN--VRVTEEASVDGRRTT----VKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 158 ~~g~P~~~i~W~k--~~~~l~~~--~~~~~~~~~~~~~~~----~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
+.+.| +.+.|+| ++..+..- ...........+... ...+|+|.+++.+|+|.|+|.|.+..
T Consensus 186 ~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 254 (282)
T 1qok_A 186 ASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSY 254 (282)
T ss_dssp ESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred ecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCC
Confidence 67778 8999999 55443110 000000000111111 13579999999999999999999753
No 181
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.80 E-value=1.1e-18 Score=177.73 Aligned_cols=186 Identities=20% Similarity=0.256 Sum_probs=131.7
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCC------CeeEEeeCCeecCCcccCCCCcceEEeecC-CCceeEEEEeecccCCC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKT------GVLQWTKDDFALGPHRNLSGFDRYAMIGSD-EEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~------~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~-~~~~~~L~I~~v~~~D~ 102 (1011)
+...+..+.+.+|++|+|.|.+.+.. +.+.|+|++... ....+|+.+..+. ..+..+|.|.+++.+|+
T Consensus 5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~-----~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~ 79 (202)
T 3bp6_B 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDT-----SLQSERATLLEEQLPLGKALFHIPSVQVRDS 79 (202)
T ss_dssp EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--C-----CCBCSSCEECGGGGGGTEEEEEECSCCGGGC
T ss_pred EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcc-----cccCCceEEeeccccCCeeEEEECCCCHHHC
Confidence 44456789999999999999998743 689999944332 1223566665432 23567999999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
|.|+|.+.+.. +..+..+.|.|..++..|.+. ...+.+|+.+.|.|. +.|+|.|.+.|++++..+....
T Consensus 80 G~Y~C~~~~~~----~~~~~~~~l~V~~~~~~p~~~---~~~~~~g~~v~l~C~-~~g~P~p~v~W~~~~~~~~~~~--- 148 (202)
T 3bp6_B 80 GQYRCLVICGA----AWDYKYLTVKVKASYMRIDTR---ILEVPGTGEVQLTCQ-ARGYPLAEVSWQNVSVPANTSH--- 148 (202)
T ss_dssp EEEEEEEEETT----EEEEEEEEEEEEBCCCCEEEE---EEECTTTCCEEEEEE-EEEBSCCEEEETTCCSCCEEEE---
T ss_pred cEEEEEEEeCC----CcceEEEEEEecCCCCcccEE---EEecCCCCeEEEEEE-ccccCCceEEEEeCCCCccCce---
Confidence 99999998863 334777889998877666553 235678999999999 5789999999999887653211
Q ss_pred EeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCC
Q psy17146 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236 (1011)
Q Consensus 183 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P 236 (1011)
....++. ...+.|..++.+|.|.|+|.|.|..|....+..+.|.....|
T Consensus 149 -~~~~~~~----~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~~~~~p 197 (202)
T 3bp6_B 149 -IRTPEGL----YQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEP 197 (202)
T ss_dssp -EECTTSC----EEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC------
T ss_pred -eeCCCCC----EEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEecCcCCC
Confidence 1122222 135677888999999999999999998755555554433333
No 182
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.80 E-value=6.8e-19 Score=181.04 Aligned_cols=186 Identities=18% Similarity=0.272 Sum_probs=134.3
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecCC--------cccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALGP--------HRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~~--------~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+.+...|.++.+.+|++|+|.|.+.+. .+.+.|+|++..... .......+|+.+.. ..+.++|+|.+++
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~ 79 (213)
T 3nl4_L 2 VVMTQTPASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSG--SGTDFTLTISDLE 79 (213)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEECSCC
T ss_pred ccEEeCCCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEec--CCCEEEEEECCCC
Confidence 457777899999999999999999984 779999995311100 00111236777763 3467799999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeee
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMS 177 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~ 177 (1011)
.+|+|.|+|.+.+.... ....+..+.|.|...+.+|.+.. .+...+.+|+.+.|.|.+..+.|.+.++|+|++..+..
T Consensus 80 ~~D~G~Y~C~~~~~~~~-~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~~~~ 158 (213)
T 3nl4_L 80 CADAATYYCQSTYENPT-YVSFGGGTEVGVKGDPVAPTVLIFPPSADLVATGTVTIVCVANKYFPDVTVTWEVDGTTQTT 158 (213)
T ss_dssp GGGCEEEEEEECCSSTT-TCEECCCEEEEEECCCBCCEEEEECCCHHHHTTSEEEEEEEEEEEBSCCEEEEEETTEECCS
T ss_pred hHHCEEEEEecCCCCce-eEEeCCCeEEEEeCCCcCCeEEEeCCchhhccCCcEeEEEEEecccCCcEEEEEeCCccCCC
Confidence 99999999999885431 11345557788877666666643 34445667999999999554489999999999988765
Q ss_pred ce-eEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEE
Q psy17146 178 NV-RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQ 216 (1011)
Q Consensus 178 ~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~ 216 (1011)
+. ............+...+.|.|.++..+|+|.|+|.|.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 159 GIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp SEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred CeecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 43 2211122233455566899999999999999999999
No 183
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.80 E-value=5.7e-19 Score=181.74 Aligned_cols=188 Identities=21% Similarity=0.286 Sum_probs=132.3
Q ss_pred eecCCceeEEecCcEEEEEEEcCC--------CCeeEEeeCCeecC----Cc-------ccCCCCcceEEeecCCCceeE
Q psy17146 31 AMEPQDQTAVVGSRVTLPCRVIDK--------TGVLQWTKDDFALG----PH-------RNLSGFDRYAMIGSDEEGDYS 91 (1011)
Q Consensus 31 ~~~p~~~~v~~G~~v~L~C~v~~~--------~~~v~W~k~~~~l~----~~-------~~~~~~~r~~i~~~~~~~~~~ 91 (1011)
...|.++.+.+|++|+|.|.+..+ .+.+.|+|++.... .. ......+|+.+..+...+.++
T Consensus 4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s 83 (214)
T 2zg1_A 4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS 83 (214)
T ss_dssp EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCC
T ss_pred eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEE
Confidence 345788999999999999999865 45899999875311 00 011233688877654456778
Q ss_pred EEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCC---CCCcEEEE
Q psy17146 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANG---KPPAEITW 168 (1011)
Q Consensus 92 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g---~P~~~i~W 168 (1011)
|+|.+++.+|+|.|+|.+.+.........+..+.|.|...+..|.+..+.. +.+|+.+.|.|.+... .|.+.++|
T Consensus 84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~--~~~G~~v~L~C~~~~~~~~~p~p~v~W 161 (214)
T 2zg1_A 84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEP--LESGRPTRLSCSLPGSCEAGPPLTFSW 161 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CC--CCTTCCEEEEEECTTCCSCSSCCEEEE
T ss_pred EEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCcc--ccCCCeEEEEEEeccCCCCCCCceEEE
Confidence 999999999999999999885311111123568899998887777765333 6789999999994332 48899999
Q ss_pred EeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE
Q psy17146 169 IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232 (1011)
Q Consensus 169 ~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v 232 (1011)
+|++..+.... . ...+.|.|..+..+|+|.|+|.|.|..+....+..+.|.|
T Consensus 162 ~~~~~~~~~~~-----~-------~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 162 TGNALSPLDPE-----T-------TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp ESSTTSSSCSS-----C-------CCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred eCCCCccCCCC-----c-------eeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence 99886542210 0 1125899999999999999999999876555566666543
No 184
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.80 E-value=3.8e-19 Score=183.12 Aligned_cols=188 Identities=14% Similarity=0.147 Sum_probs=134.8
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCcee--EEEEeecccCCC
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY--SLEIYPVMLDDD 102 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~--~L~I~~v~~~D~ 102 (1011)
...|.|...|. ..+.+|++|+|.|.+.++.+.+.|+|++..+.... + ... ...... +|.|.+++.+|+
T Consensus 7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~~~~~~~W~k~g~~~~~~~------~-~~~--~~~~~~~~~L~I~~v~~~D~ 76 (218)
T 1uct_A 7 FPMPFISAKSS-PVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREI------G-RRL--KFWNETDPEFVIDHMDANKA 76 (218)
T ss_dssp SCCCCEEESSC-SEEETTCCEEEEECCCTTCSEEEEEEEETTEEEEC------S-EEC--C----CCCEEEECSCCGGGC
T ss_pred CCCCEEEecCC-CccCCCCCEEEEEEcCCCCCEEEEEECCCcccccc------c-ccC--CCCcceeeEEEEcccccccC
Confidence 34688988888 58999999999999988778999999986542110 0 000 011223 799999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
|.|+|.+.+... ....+..+.|.|.....+|.+...+...+.+|+.++|.|. ..+.|.+.+.|+|++..+.....
T Consensus 77 G~Y~C~a~n~~~--~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~-~~~~~~~~~~W~k~g~~~~~~~~-- 151 (218)
T 1uct_A 77 GRYQCQYRIGHY--RFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCS-SAHIPFDRFSLAKEGELSLPQHQ-- 151 (218)
T ss_dssp EEEEEEEEETTT--EEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEE-CSSSCCSEEEEEETTCSSCCSEE--
T ss_pred EEEEEEEEcCCC--ceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEe-CCCCCCCEEEEEECCCccccccc--
Confidence 999999998532 1234567888888766667776554567889999999997 45678889999999887644211
Q ss_pred EeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC---ceeEEEEEEEEEeC
Q psy17146 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR---TYKVARLKLLVKYA 235 (1011)
Q Consensus 183 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~---~~~s~~v~v~v~~~ 235 (1011)
.... ...|.|.+++.+|+|.|+|.|.|.... ...+..+.|.|...
T Consensus 152 --~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 199 (218)
T 1uct_A 152 --SGEH------PANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS 199 (218)
T ss_dssp --ECSS------SEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred --CCCc------cCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence 1111 258999999999999999999986421 23455666666543
No 185
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.80 E-value=7.5e-19 Score=177.29 Aligned_cols=166 Identities=23% Similarity=0.385 Sum_probs=127.2
Q ss_pred cceEeeCCC--ceEecCCCcEEEEeecCCCCCCceEEEeCCCcee-------eccCCcEEEEeeccCCCeEEEEEEEEcC
Q psy17146 390 GPRFRARPY--SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMG 460 (1011)
Q Consensus 390 ~P~~~~~p~--~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 460 (1011)
+|.+...+. +..+.+|+.+.|.|.+.|.|.+.+.|++++..+. ......|.|.+++.+|+|.|+|.+.|..
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 81 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKA 81 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEECSSCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETT
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeeccCCCCeEEEEECCeEcCCCccEEEeCCeeEEEEecCChhcCcEEEEEEEccc
Confidence 567665543 5788999999999999999999999999985432 2345679999999999999999999753
Q ss_pred CcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEE
Q psy17146 461 FPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLD 540 (1011)
Q Consensus 461 ~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~ 540 (1011)
+. . .....|.
T Consensus 82 ~~-~---------------------------------------------------------------------~~~~~l~ 91 (192)
T 2va4_A 82 GE-D---------------------------------------------------------------------EKQAFLQ 91 (192)
T ss_dssp EE-E---------------------------------------------------------------------EEEEEEE
T ss_pred cc-c---------------------------------------------------------------------ceEEEEE
Confidence 21 1 1223344
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec----------------CCCcEEEeecCCCCCE
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG----------------NSPNLTLLMTSDDLAG 604 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~----------------~~~~L~I~~v~~~d~G 604 (1011)
|..+|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|++++...... ....|.|.++..+|+|
T Consensus 92 V~~~p~~~~~~-~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 170 (192)
T 2va4_A 92 VFVQPHIIQLK-NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 170 (192)
T ss_dssp EEEEEEEEEEC-CEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCBCTTSCEEEEEETTEEEEEEESCCGGGCE
T ss_pred EEccCcccccC-cceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeeccccccCCcEEEeeccCceEEEEecCCcccCE
Confidence 44555554433 345677999999999999999999999995433221 1257999999999999
Q ss_pred EEEEEEEecCCCceeeEEEEEEc
Q psy17146 605 RYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 605 ~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
.|+|.|.| ..|..+..+.|.|+
T Consensus 171 ~Y~C~a~n-~~g~~~~~~~l~V~ 192 (192)
T 2va4_A 171 RYDCEAAS-RIGGHQKSMYLDIE 192 (192)
T ss_dssp EEEEEEEC-SSCEEEEEEEEEEC
T ss_pred EEEEEEEe-cCCceEEEEEEEeC
Confidence 99999999 67778888888774
No 186
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.80 E-value=3.7e-19 Score=178.27 Aligned_cols=163 Identities=13% Similarity=0.152 Sum_probs=125.9
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
..+|.|...|.. .+.+|++|+|.|.+.++.+.+.|+|++... . ....+|.|.+++.+|+|.
T Consensus 6 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~~~~W~k~g~~~-------------~-----~~~~~L~i~~v~~~D~G~ 66 (184)
T 2gi7_A 6 LPKPSLQALPSS-LVPLEKPVTLRCQGPPGVDLYRLEKLSSSR-------------Y-----QDQAVLFIPAMKRSLAGR 66 (184)
T ss_dssp BCCCEEEEESCS-EEETTCCEEEEEECSTTCSEEEEEETTTCC-------------E-----ESSSEEEESSCCGGGCEE
T ss_pred CCCCeEEeCCCc-cccCCCcEEEEEeCCCCCCEEEEEECCccc-------------c-----CcccEEEECcCChhhCce
Confidence 346888888885 899999999999998877899999998540 0 123379999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
|+|.+.|..+ ....+..+.|.|.....+|.+...+...+.+|+.+.|.|. +.+.| +.+.|+|++..+....
T Consensus 67 Y~C~a~n~~g--~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~-~~~~~-~~~~w~k~g~~~~~~~----- 137 (184)
T 2gi7_A 67 YRCSYQNGSL--WSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQ-TRYGF-DQFALYKEGDPAPYKN----- 137 (184)
T ss_dssp EEEEEEETTE--EBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEE-CSSCC-CEEEEEECCCCTTSCC-----
T ss_pred EEEEEEcCCC--ccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEE-cCCCC-cEEEEEECCCcCccee-----
Confidence 9999988532 1124566888888766666666544567789999999999 55555 5999999987764311
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+.......|.|.+++.+|+|.|+|.|.|..+
T Consensus 138 -----~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 138 -----PERWYRASFPIITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp -----CCEEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred -----cCCCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence 1223346899999999999999999999764
No 187
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.80 E-value=6.6e-19 Score=181.11 Aligned_cols=188 Identities=18% Similarity=0.267 Sum_probs=131.9
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCc--------ccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPH--------RNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
+...|.++.+.+|++|+|.|.+.+ +.+.+.|+|++...... ......+|+.+.. ..+.++|+|.+++.+
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~ 81 (213)
T 3d9a_L 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVETE 81 (213)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc--CCCEEEEEECCCChh
Confidence 556688999999999999999987 45789999864221110 0111225777765 335679999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCceeeec
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVMSN 178 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~ 178 (1011)
|+|.|+|.+.+.... ..+..+.|+|.....+|.+.. .+...+.+|+.+.|.|.+.++.|.+ .++|+|++..+..+
T Consensus 82 D~G~Y~C~~~~~~~~---~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~ 158 (213)
T 3d9a_L 82 DFGMYFCQQSNSWPY---TFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG 158 (213)
T ss_dssp GCEEEEEEECSSSSC---EECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred hCEEEEEeeecCCcc---eeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcce
Confidence 999999999875421 233346788876554555543 3333344789999999954447775 89999999887655
Q ss_pred -eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 179 -VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 179 -~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.............+...+.|.|.++..+|+|.|+|.|.|.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 203 (213)
T 3d9a_L 159 VLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 203 (213)
T ss_dssp EEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred eeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence 22111112222345566899999999999999999999987654
No 188
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.80 E-value=1.7e-18 Score=181.82 Aligned_cols=199 Identities=16% Similarity=0.216 Sum_probs=137.6
Q ss_pred ccceeec----CCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 27 EQKFAME----PQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 27 ~p~~~~~----p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
+|.|... +..+.+.+|++++|.|.+.+ +.+.+.|+|++..+....... +.... .+..+|.|.+++.+|
T Consensus 11 ~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~---~~~~~----~~~~~L~i~~v~~~d 83 (241)
T 3grw_A 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG---GIKLR----HQQWSLVMESVVPSD 83 (241)
T ss_dssp CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTT---CCEEE----GGGTEEEECSCCGGG
T ss_pred CceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCccc---ceeee----ccceEEEEEeCCccc
Confidence 5666644 45789999999999999997 567999999998875432221 11221 234489999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEEcCCC-CCeee--cCCeeeecCCCcEEEEEEccCCCCCcEEEEEe----CCce
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPD-PPRIV--QGDTLYTTEDREIELECISANGKPPAEITWID----GTGT 174 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~-~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k----~~~~ 174 (1011)
+|.|+|.+.+.. +..+..+.|.|...+. .+.+. ......+.+|+.+.|.|. +.+.|.+.+.|++ ++..
T Consensus 84 ~G~Y~C~~~~~~----~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~-~~~~p~p~v~W~~~~~~~g~~ 158 (241)
T 3grw_A 84 RGNYTCVVENKF----GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCK-VYSDAQPHIQWLKHVEVNGSK 158 (241)
T ss_dssp CEEEEEEEEETT----EEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEE-EECSSCCEEEEEEECCSSSCS
T ss_pred CEEEEEEEeecC----CceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEE-EecCCCCEEEEEEcccCCCcc
Confidence 999999999853 3456668888876433 23333 245667889999999999 6789999999999 6666
Q ss_pred eeecee-E-EEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCceE
Q psy17146 175 VMSNVR-V-TEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKVQ 239 (1011)
Q Consensus 175 l~~~~~-~-~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~~ 239 (1011)
+..+.. + ..............+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~--~~~~~l~V~~~p~~~ 223 (241)
T 3grw_A 159 VGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA--EKAFWLSVHGPRAAE 223 (241)
T ss_dssp SCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEE--EEEEEEEC-------
T ss_pred cCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceE--EEEEEEEecCCCCCC
Confidence 644221 1 11111111122345789999999999999999999999876 566677777666543
No 189
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.80 E-value=7.5e-19 Score=180.98 Aligned_cols=172 Identities=19% Similarity=0.213 Sum_probs=130.1
Q ss_pred cCCceEEEcCCCcEEEEEEEecCCCC---eEEEEecCCcee------------------------------ecCCCcEEE
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGNPAP---EITWIHEDSDKV------------------------------VGNSPNLTL 595 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~p~p---~v~W~k~~~~~~------------------------------~~~~~~L~I 595 (1011)
..|..+.+.+|++++|.|.+.+.|.+ .|.|+|++.... ...+++|+|
T Consensus 4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I 83 (218)
T 4frw_A 4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL 83 (218)
T ss_dssp ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence 34667889999999999999998876 489999874321 012357999
Q ss_pred eecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCe--eecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEeccc
Q psy17146 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPT--IISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVG 673 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~--i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~ 673 (1011)
.+++.+|+|.|+|.+.|...........+.+..++. +.......+..|+.+.|.|.+.|.|.| .|+|++++..+...
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p-~i~W~~~~~~~~~~ 162 (218)
T 4frw_A 84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAP-SVTWDTEVKGTTSS 162 (218)
T ss_dssp SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCC-EEEEEESSCCEEEE
T ss_pred eeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCc-eEEEEECCcccccC
Confidence 999999999999999984444455555555554443 334456667889999999999999999 99999999887632
Q ss_pred CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 674 SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
..+.... .....+.|.|.++..+|.|.|+|.|+|..|..+..+++.|.
T Consensus 163 --~~~~~~~---~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~ 210 (218)
T 4frw_A 163 --RSFKHSR---SAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH 210 (218)
T ss_dssp --EEEECSS---SEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred --ceEecCC---cEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence 1111110 11235689999999999999999999999988877777653
No 190
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.79 E-value=1.4e-19 Score=189.25 Aligned_cols=191 Identities=21% Similarity=0.327 Sum_probs=125.0
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCC--CC-eeEEeeCCeecCC--------cccCCCCcceEEeecCCCceeEEEEee
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDK--TG-VLQWTKDDFALGP--------HRNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~--~~-~v~W~k~~~~l~~--------~~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.+.. |..+.+.+|++|+|.|.+.+. .+ .+.|+|++..... .......+|+.+.. ..+.++|+|.+
T Consensus 21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~ 97 (234)
T 2j6e_L 21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK--SGTSASLAISG 97 (234)
T ss_dssp CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE--ETTEEEEEEES
T ss_pred cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe--cCCeEEEEECC
Confidence 45555 889999999999999999863 23 6999997421100 00111235776654 24567999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-CCCeeec-CCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCCc
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP-DPPRIVQ-GDTLYTTEDREIELECISANGKPP-AEITWIDGTG 173 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~ 173 (1011)
++.+|+|.|+|.+.+.... ....+..+.|+|...+ .+|.+.. .+...+.+|+.+.|.|.+.+..|+ +.++|+|++.
T Consensus 98 v~~~D~G~Y~C~~~~~~~~-~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~ 176 (234)
T 2j6e_L 98 LRSEDEADYYCATWDDSLS-AVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGA 176 (234)
T ss_dssp CCSTTCSEEEEEEEETTTT-EEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTE
T ss_pred CCHHHCEEEEEEEEcCCcc-eeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCE
Confidence 9999999999999986431 0122334566774332 2333321 222233468899999994444555 4999999998
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+..+.............+...+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 225 (234)
T 2j6e_L 177 PVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV 225 (234)
T ss_dssp ECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCC
T ss_pred ECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCce
Confidence 8755432211111112233344689999999999999999999987654
No 191
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.79 E-value=1.2e-18 Score=178.66 Aligned_cols=187 Identities=18% Similarity=0.250 Sum_probs=129.7
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCe--ecC--C----cccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDF--ALG--P----HRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~--~l~--~----~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
+.. |.++.+.+|++|+|.|.+.+ +.+.+.|+|++. .+. . .......+|+.+.. ..+.++|+|.+++.+
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~ 80 (210)
T 1lk3_L 4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEAD 80 (210)
T ss_dssp EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe--cCCEEEEEECCCCHH
Confidence 455 89999999999999999987 467899999532 110 0 00011235777654 345679999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCceeeec
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVMSN 178 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~~~ 178 (1011)
|+|.|+|.+.+.... .....+.|+|.....+|.+.. .+...+.+|+.+.|.|.+.+..|++ .++|+|++..+..+
T Consensus 81 D~G~Y~C~~~~~~~~---~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~ 157 (210)
T 1lk3_L 81 DTAIYFCQQSWNGPL---TFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDG 157 (210)
T ss_dssp GCEEEEEEECSSSSC---EECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTT
T ss_pred HCeEEEEEEEcCCCc---eeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCC
Confidence 999999999875321 223345788876555555542 2333345799999999954446664 99999999887654
Q ss_pred -eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 179 -VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 179 -~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.............+...+.|.|.++..+|+|.|+|.|.|.....
T Consensus 158 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (210)
T 1lk3_L 158 VLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS 202 (210)
T ss_dssp EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred ceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence 22111112223345566899999999999999999999987654
No 192
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.79 E-value=8.3e-19 Score=180.39 Aligned_cols=190 Identities=18% Similarity=0.265 Sum_probs=133.5
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCC--eecC------CcccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDD--FALG------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~--~~l~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+.+...| .+.+.+|++|+|.|.+.+ +.+.+.|+|.. .... ........+|+.+.. ..+.++|.|.+++
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~ 78 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN--SGNMATLTISKAQ 78 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCC
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe--cCCEEEEEECCCC
Confidence 4566677 999999999999999995 67799999932 1110 001111335777655 3467799999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-CCCeeec-CCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCCcee
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP-DPPRIVQ-GDTLYTTEDREIELECISANGKPP-AEITWIDGTGTV 175 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l 175 (1011)
.+|+|.|+|.+.+.... ....+..+.|.|...+ .+|.+.. .....+.+|+.+.|.|.+.+..|+ +.++|+|++..+
T Consensus 79 ~~D~G~Y~C~~~~~~~~-~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l 157 (213)
T 3mj8_L 79 AGDEADYYCQSWDGTNS-AWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPI 157 (213)
T ss_dssp GGGCEEEEEEEEETTTT-EEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred hhhCEEEEEEeccCCcc-eeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCccc
Confidence 99999999999986431 1245666888898544 3455432 223344589999999995544455 499999999888
Q ss_pred eeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 176 MSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..+........ ....+...+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 203 (213)
T 3mj8_L 158 TQGVKTTQPSK-SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTV 203 (213)
T ss_dssp CTTEEECCCEE-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEE
T ss_pred CCCcccCCcCc-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccE
Confidence 65433222222 33345556789999999999999999999987543
No 193
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.79 E-value=8.6e-19 Score=180.17 Aligned_cols=186 Identities=19% Similarity=0.278 Sum_probs=132.5
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-----CCeeEEeeCC----------------eecCCcccCCCCcceEEeec-CCC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKDD----------------FALGPHRNLSGFDRYAMIGS-DEE 87 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~~----------------~~l~~~~~~~~~~r~~i~~~-~~~ 87 (1011)
+...+..+.+.+|++|+|.|.+.+. .+.+.|+|++ ..+... .....+|+.+..+ ...
T Consensus 3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~ 81 (214)
T 3jz7_A 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNY-YPDLKGRVHFTSNDVKS 81 (214)
T ss_dssp ---CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCC-CGGGTTTEEESCSCGGG
T ss_pred eecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEcccc-CCccccceEEeccCccC
Confidence 4455678899999999999999873 3589999843 222110 1112357776542 234
Q ss_pred ceeEEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEE
Q psy17146 88 GDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEIT 167 (1011)
Q Consensus 88 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~ 167 (1011)
+.++|+|.+++.+|+|.|+|.+.+.. +..+..+.|.|..+|..+.+.. ...+.+|+.+.|.|.+..+.|.+.+.
T Consensus 82 ~~~~L~i~~v~~~D~G~Y~C~~~~~~----~~~~~~~~l~V~~~p~~~~~~~--~~~~~~g~~v~l~C~~~~g~p~~~v~ 155 (214)
T 3jz7_A 82 GDASINVTNLQLSDIGTYQCKVKKAP----GVANKKFLLTVLVKPSGTRCFV--DGSEEIGNDFKLKCEPKEGSLPLQFE 155 (214)
T ss_dssp TBCCEEECSCCGGGCEEEEEEEEETT----EEEEEEEEEEEECCCBSCEEEE--ESCCBTTCCEEEEEECSBCCSSCEEE
T ss_pred CcccEEEccCChhhCeEEEEEEEeCC----CccccEEEEEEEcCCCCceeee--ecceecCCcEEEEecCCCCCCCCEEE
Confidence 56789999999999999999999853 3457788999998877665543 22367899999999944899999999
Q ss_pred EEeCCce--eeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEe
Q psy17146 168 WIDGTGT--VMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKY 234 (1011)
Q Consensus 168 W~k~~~~--l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~ 234 (1011)
|+|++.. +...... .... +.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 156 W~~~~~~~~~~~~~~~----~~~~------~~L~i~~~~~~d~G~Y~C~a~N~~g~~--~~~~~l~V~~ 212 (214)
T 3jz7_A 156 WQKLSDSQTMPTPWLA----EMTS------PVISVKNASSEYSGTYSCTVQNRVGSD--QCMLRLDVVP 212 (214)
T ss_dssp EEECSTTCCCCGGGGG----GTTS------SEEEECSCCGGGCEEEEEEEECSSCEE--EEEEEECCBC
T ss_pred EEECCCCCccCcccee----ccCC------CEEEEecCCHHHCEEEEEEEEcCCCcE--EEEEEEEEeC
Confidence 9996432 2221111 1111 389999999999999999999999876 5555665553
No 194
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.79 E-value=8.2e-20 Score=187.14 Aligned_cols=196 Identities=20% Similarity=0.288 Sum_probs=143.3
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCc------ccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPH------RNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~------~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
+..|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+... .......|+.+.. .+|.|.+++.
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~------~~L~i~~~~~ 77 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP------TGITFKSVTR 77 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET------TEEECSCCCT
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec------cEEEEeeCCH
Confidence 356778899999999999999999998 67799999998653110 0112234665542 4799999999
Q ss_pred CCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeece
Q psy17146 100 DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNV 179 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~ 179 (1011)
+|+|.|+|.+.+..+ ....+..+.|.|..+|..+.+.. ...+.+|+.+.|.|.+..++|.+.+.|+|++..+....
T Consensus 78 ~d~G~Y~C~~~~~~g--~~~~~~~~~l~V~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~ 153 (209)
T 1nbq_A 78 EDTGTYTCMVSEEGG--NSYGEVKVKLIVLVPPSKPTVNI--PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNP 153 (209)
T ss_dssp TSCSEEEEEEEETTS--SCEECCEEECCEEBCCCCCCCCC--BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCS
T ss_pred HHCcEEEEEEecCCC--CccceEEEEEEEecCCcCCCccc--ccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCcc
Confidence 999999999998643 23456778899998887665543 34578899999999955899999999999998775532
Q ss_pred eEEEeeecCCc--eEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEE
Q psy17146 180 RVTEEASVDGR--RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233 (1011)
Q Consensus 180 ~~~~~~~~~~~--~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~ 233 (1011)
....... +.+ .....+.|.|.+++.+|+|.|+|.|.|..|....+..+.|.|.
T Consensus 154 ~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~ 208 (209)
T 1nbq_A 154 KSTRAFS-NSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208 (209)
T ss_dssp SSSSSCT-TCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred ccceeee-ccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence 2100000 000 0001258999999999999999999999998755666666654
No 195
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.79 E-value=3.2e-19 Score=184.11 Aligned_cols=190 Identities=19% Similarity=0.265 Sum_probs=134.0
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
...+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+..... ...++. ..+......|+|.+++.+|+
T Consensus 6 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~--~~~~~~--~~~~~~~~~l~i~~v~~~d~ 81 (217)
T 2vr9_A 6 QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEK--KSHRVQ--FKDGALFFYRTMQGKKEQDG 81 (217)
T ss_dssp CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSS--SSSEEE--CTTSCEEESSCCBSSSCBCC
T ss_pred ccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCc--cceeEE--ecCCceEEEEEeccCCcccC
Confidence 456899999999999999999999999987 6679999999987754311 112222 22222233457999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
|.|+|.+.+..+ ...+..+.|.|...+.. ....+....+.+|+.+.|.|.+..+.|.+.++|+|++..+.......
T Consensus 82 G~Y~C~~~n~~g---~~~~~~~~l~v~~~~~~-~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~ 157 (217)
T 2vr9_A 82 GEYWCVAKNRVG---QAVSRHASLQIAVLRDD-FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMS 157 (217)
T ss_dssp EEEEEEEEETTE---EEECCCEEEEECEECCS-CSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC-
T ss_pred ceEEEEEecCCC---ccccccceEEEEEeCCC-cEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccc
Confidence 999999998532 12234566666653322 22234466788999999999944899999999999988876422211
Q ss_pred EeeecCCc-eEEEEEEEEEeeccCcCCcEEEEEEEeCCCCce
Q psy17146 183 EEASVDGR-RTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223 (1011)
Q Consensus 183 ~~~~~~~~-~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~ 223 (1011)
.. ...+ .....++|.|.+++.+|+|.|+|.|.|..|...
T Consensus 158 ~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~ 197 (217)
T 2vr9_A 158 FG--ASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRE 197 (217)
T ss_dssp ----CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred cc--cCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceec
Confidence 00 0111 111124799999999999999999999998763
No 196
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.79 E-value=1e-18 Score=179.73 Aligned_cols=175 Identities=19% Similarity=0.344 Sum_probs=125.7
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--------------------eee---cCCCcEEEeecCCCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------------------KVV---GNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--------------------~~~---~~~~~L~I~~v~~~d~ 603 (1011)
+...|..+.+.+|++++|.|.+.+.|.+.+.|+|++.. ... ....+|+|.+++.+|+
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 83 (213)
T 3d9a_L 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF 83 (213)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence 44557788999999999999999999999999986421 111 1224899999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcC---CCeeec-CCceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccCCCCe
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKG---RPTIIS-HRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDDY 678 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~---~P~i~~-~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~~ 678 (1011)
|.|+|.|.|.........+.|.|.. +|.+.. +....+..|+.++|.|.+.| .|.+..++|+|+|..+........
T Consensus 84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~ 163 (213)
T 3d9a_L 84 GMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSW 163 (213)
T ss_dssp EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEE
T ss_pred EEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecC
Confidence 9999999984222233445677765 677663 33333457999999999998 555558999999999864200001
Q ss_pred EEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 679 SVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 679 ~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
....+ .++ ..+.|.|.++..+|.|.|+|.|.|..........+
T Consensus 164 ~~~~~--~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i 209 (213)
T 3d9a_L 164 TDQDS--KDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF 209 (213)
T ss_dssp CCCCT--TTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred CCccC--CCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence 11100 111 24699999999999999999999998876544444
No 197
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.79 E-value=1.7e-18 Score=178.08 Aligned_cols=188 Identities=11% Similarity=0.061 Sum_probs=125.2
Q ss_pred cCCceeEEec--CcEEEEEEEcCCCCeeEEeeC---CeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 33 EPQDQTAVVG--SRVTLPCRVIDKTGVLQWTKD---DFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 33 ~p~~~~v~~G--~~v~L~C~v~~~~~~v~W~k~---~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
+|..+.+.+| ++|+|.|.+.++.+.+.|+++ +..+.. ..++.... ...|.|.+++.+|+|.|+|
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~~p~~~v~w~~~~~~g~~~~~------~~~~~~~~-----~~~l~I~~v~~~D~G~Y~C 81 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPD------GNRISWDS-----KKGFTIPSYMISYAGMVFC 81 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBSSTTCCEEEEEETTTEEECCC------SSSCEEET-----TTEEEEEGGGTTTCSEEEE
T ss_pred CceEEEEecCCCccEEEeeccCCCCcEEEEEhhcCCCccccC------CCcccccC-----CccEEEccCChhcCceEEE
Confidence 4688999999 999999999988889999885 444321 12333321 1269999999999999999
Q ss_pred EEEeCCCCCcceeeeEEEEEEEcCCCCCee--ecCCeeeecCCCcEEEEEEccCCCC--CcEEEEEeCCceeeecee-EE
Q psy17146 108 QVSTGILGEPAIRSRFATLTVLVPPDPPRI--VQGDTLYTTEDREIELECISANGKP--PAEITWIDGTGTVMSNVR-VT 182 (1011)
Q Consensus 108 ~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i--~~~~~~~v~eg~~v~L~C~~~~g~P--~~~i~W~k~~~~l~~~~~-~~ 182 (1011)
.+.+... ...+..+.|.|... .++.+ .....+.+.+|+.+.|.|. +.|.| .+.+.|++++..+..... ..
T Consensus 82 ~a~n~~~---~~~s~~~~l~v~~~-~~p~~~~~~~~~~~v~~G~~v~L~C~-~~g~p~~~~~i~W~~~g~~~~~~~~~~~ 156 (213)
T 2x1w_L 82 EAKINDE---SYQSIMYIVVVVGY-RIYDVVLSPSHGIELSVGEKLVLNCT-ARTELNVGIDFNWEYPSSKHQHKKLVNR 156 (213)
T ss_dssp EEC-------CEECCCEEEEECBC-CEEEEEEESCSCEEEETTCCEEEEEE-EEECTTBCCEEEEECSCSSCCSEEEEEE
T ss_pred EEEECCe---eEEEEEEEEEEeCC-cccceEEcCCCCeEEcCCCCEEEEEE-EECCCCCceEEEEEecCCccceEEEecc
Confidence 9987421 23444467777542 22322 2334558899999999999 55544 468999999887533211 10
Q ss_pred EeeecC-CceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCCce
Q psy17146 183 EEASVD-GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAPKV 238 (1011)
Q Consensus 183 ~~~~~~-~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P~~ 238 (1011)
...... +......++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|.+
T Consensus 157 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~--~~~~~l~V~~~p~i 211 (213)
T 2x1w_L 157 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK--KNSTFVRVHEDPIE 211 (213)
T ss_dssp EECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEE--EEEEEEEEEC----
T ss_pred ccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcE--EEEEEEEEeccccc
Confidence 001001 0113345689999999999999999999998876 66777777766643
No 198
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.79 E-value=3e-18 Score=174.31 Aligned_cols=176 Identities=14% Similarity=0.143 Sum_probs=125.4
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
..|.|...|. ..+.+|++|+|.|.+..+.+.+.|+|++..+.... +.... ........|.|.+++.+|+|.|
T Consensus 7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~------~~~~~-~~~~~~~~l~I~~v~~~D~G~Y 78 (201)
T 1nkr_A 7 RKPSLLAHPG-PLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLR------LIGEH-HDGVSKANFSISRMTQDLAGTY 78 (201)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEEESSCCSEEEEEEESSSCEEEE------EECEE-ETTEEEEEEEESSCCGGGCEEE
T ss_pred CCCeEEEEcC-CccCCCCcEEEEEeccCCCCEEEEEECCCcCCcce------eeeec-CCCCceEEEEeccCCcccCeEE
Confidence 4577888887 78999999999999988778999999986542110 00000 0112345899999999999999
Q ss_pred EEEEEeCCCC-CcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe
Q psy17146 106 QCQVSTGILG-EPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 106 ~C~~~~~~~~-~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
+|.+.+...+ .....+..+.|.|...+.+|.+...+...+.+|+.++|.|. +.+ |.+.+.|+|++..+........
T Consensus 79 ~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~-~~~-~~~~~~w~k~g~~~~~~~~~~~- 155 (201)
T 1nkr_A 79 RCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCS-SRS-SYDMYHLSREGEAHERRLPAGP- 155 (201)
T ss_dssp EEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEE-ESS-CCSEEEEEETTCSSCEEEECEE-
T ss_pred EEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEe-CCC-CCceEEEEECCcccCccccccc-
Confidence 9999764221 11234667889998876667776444456889999999999 444 5679999999887654322111
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
...+ .....|.|.+++ |+|.|+|.|.+.
T Consensus 156 -~~~~---~~~~~L~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 156 -KVNG---TFQADFPLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp -EETT---EEEEEEEEEECC--SCEEEEEEEEET
T ss_pred -ccCC---ceEEEEEeCCcC--CCeeEEEEEEcC
Confidence 1111 124689999998 999999999875
No 199
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.79 E-value=9.2e-19 Score=175.42 Aligned_cols=150 Identities=15% Similarity=0.199 Sum_probs=123.9
Q ss_pred eEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec--------------------------CCCcEEEeecCCCCCEEE
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG--------------------------NSPNLTLLMTSDDLAGRY 606 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~--------------------------~~~~L~I~~v~~~d~G~Y 606 (1011)
.+.+.+|++++|.|.+.+.|.+.+.|+|++...... ...+|.|.+++.+|+|.|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 567899999999999999999999999998642221 134599999999999999
Q ss_pred EEEEEecCCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcC
Q psy17146 607 YCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686 (1011)
Q Consensus 607 ~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~ 686 (1011)
+|.|.|. . ..+.|.|.. +..+....+.+|+.++|.|.+.+.|.| .+.|+++|..+..
T Consensus 84 ~C~~~~~-~----~~~~l~V~~---~~~~~~~~v~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~-------------- 140 (184)
T 2ny1_B 84 ICEVEDQ-K----EEVQLLVFG---LTANSDTHLLQGQSLTLTLESPPGSSP-SVQCRSPRGKNIQ-------------- 140 (184)
T ss_dssp EEEETTE-E----EEEEEEEEE---EEESSCSEEETTCCEEEEEECCTTCCC-EEEEECTTSCEEE--------------
T ss_pred EEEEEcC-C----CcEEEEEEE---ecCCCCceeecCCCEEEEEEcCCCCCC-EEEEEeCCCcccc--------------
Confidence 9999873 2 255666663 333455678999999999999999989 9999999866521
Q ss_pred ccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 687 ~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
....|.|.++..+|+|.|+|.|.|..|..+..+.|.|.+
T Consensus 141 --~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~ 179 (184)
T 2ny1_B 141 --GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 179 (184)
T ss_dssp --ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred --CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEe
Confidence 136899999999999999999999999999999998854
No 200
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.79 E-value=3.8e-19 Score=187.99 Aligned_cols=189 Identities=17% Similarity=0.233 Sum_probs=130.7
Q ss_pred eeecCCceeEEecCcEEEEEEEc----CCCCeeEEeeCCeecC----Cc--------------------ccCCCCcceEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVI----DKTGVLQWTKDDFALG----PH--------------------RNLSGFDRYAM 81 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~----~~~~~v~W~k~~~~l~----~~--------------------~~~~~~~r~~i 81 (1011)
+...+.++.+.+|++|+|.|.+. .+.+.+.|+|++.... .. ......+|..+
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 84 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 84 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence 45566789999999999999998 4566899999975420 00 00112245554
Q ss_pred eecCCCceeEEEEeecccCCCceEEEEEEeCCCCC-cceeeeEEEEEEEcCCCCCe--eecCCeeeecCCCcEEEEEEcc
Q psy17146 82 IGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGE-PAIRSRFATLTVLVPPDPPR--IVQGDTLYTTEDREIELECISA 158 (1011)
Q Consensus 82 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~s~~~~l~V~~~p~~~~--i~~~~~~~v~eg~~v~L~C~~~ 158 (1011)
.. .+.++|+|.+++.+|+|.|+|.+.+..... ....+..+.|.|..++.++. +.....+.+.+|+.+.|.|. +
T Consensus 85 ~~---~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~-~ 160 (250)
T 2fbo_J 85 AN---LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCP-C 160 (250)
T ss_dssp SC---TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCC-E
T ss_pred cc---CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEE-e
Confidence 43 245689999999999999999999864321 22345678888887644443 33445678889999999999 6
Q ss_pred CCCCCcEEEEEeCCceeeeceeE--EEe------------eecCCceEE-EEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 159 NGKPPAEITWIDGTGTVMSNVRV--TEE------------ASVDGRRTT-VKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 159 ~g~P~~~i~W~k~~~~l~~~~~~--~~~------------~~~~~~~~~-~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+.|.|.++|+|++..+...... ... .....+... ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 161 ~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 239 (250)
T 2fbo_J 161 TDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGEL 239 (250)
T ss_dssp ESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGG
T ss_pred cCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCcccc
Confidence 78899999999988766432110 000 000111111 11589999999999999999999977754
No 201
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.78 E-value=1.1e-17 Score=173.25 Aligned_cols=193 Identities=23% Similarity=0.329 Sum_probs=129.5
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-C-----CCeeEEeeCCeecCCc---------ccCCCCcceEEeecC-CCceeEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-K-----TGVLQWTKDDFALGPH---------RNLSGFDRYAMIGSD-EEGDYSLE 93 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~-----~~~v~W~k~~~~l~~~---------~~~~~~~r~~i~~~~-~~~~~~L~ 93 (1011)
+...++.+.+.+|++|+|.|.+.+ + ...+.|+|++..+... ......+|..+..+. ..+.++|.
T Consensus 4 v~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~ 83 (222)
T 3sbw_C 4 VTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQ 83 (222)
T ss_dssp CBCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEE
T ss_pred EecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEE
Confidence 344567789999999999999864 2 2379999986333111 111123566665432 34677999
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCc
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTG 173 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~ 173 (1011)
|.+++.+|+|.|+|.+.+. +..+..+.|.|..++..+.+.. ...+.+|+.+.|.|. +.|+|.+.++|+++++
T Consensus 84 I~~v~~~D~G~Y~C~~~~~-----~~~~~~~~l~V~~~~~~~~~~~--~~~~~~g~~v~L~C~-~~g~P~p~i~W~~~~g 155 (222)
T 3sbw_C 84 ITDVKLQDAGVYRCMISYG-----GADYKRITVKVNAPYNKINQRI--LVVDPVTSEHELTCQ-AEGYPKAEVIWTSSDH 155 (222)
T ss_dssp ESSCCGGGCEEEEEEEESS-----SEEEEEEEEEEEBCCCCCEEEE--EEEETTTTEEEEEEE-EEEBSCCEEEEEETTC
T ss_pred EcCcccccCeEEEEEEEeC-----CCceeEEEEEEECCCCCCCcee--eeeecCCCcEEEEEE-ecCCCCCeEEEEECCC
Confidence 9999999999999999872 2345678899998776654432 125678999999999 5679999999999955
Q ss_pred eeeec-eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCC
Q psy17146 174 TVMSN-VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236 (1011)
Q Consensus 174 ~l~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P 236 (1011)
.+... .........++ .+...+.|.+ ..+|.|.|+|.|.|..|... ..+.|.|...|
T Consensus 156 ~~~~~~~~~~~~~~~~~-~~~~~~~l~v---~~~d~g~Y~C~a~n~~g~~~--~~~~l~v~~~p 213 (222)
T 3sbw_C 156 QVLSGKTTTTNSKREEK-LFNVTSTLRI---NTTTNEIFYCTFRRLDPEEN--HTAELVIPELP 213 (222)
T ss_dssp CEECCEEEEEECC-----CEEEEEEEEE---ECCTTCEEEEEEEETTTTEE--EEEEEECCCC-
T ss_pred ceecCccceEEEcCCCC-CEEEEEEEEE---eccCCcEEEEEEEeCcccee--eEEEEEecCCc
Confidence 55443 22212222222 3333344544 56899999999999999774 44455555444
No 202
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.78 E-value=4.9e-19 Score=175.64 Aligned_cols=150 Identities=11% Similarity=0.068 Sum_probs=114.9
Q ss_pred eEEEcCCCcEEEEEEEec--CCCCeEEEEecCCce----------------eecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 553 SVQVDRGAGVNLLCDVDG--NPAPEITWIHEDSDK----------------VVGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g--~p~p~v~W~k~~~~~----------------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
.+.+.+|++++|.|.... .+.+.|.|+|++..+ ....+++|.|.+++.+|+|.|+|.|.| .
T Consensus 5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n-~ 83 (176)
T 1hng_A 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS-T 83 (176)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEE-T
T ss_pred EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEe-C
Confidence 466889999999995433 566799999998422 223457799999999999999999999 4
Q ss_pred CCce--eeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeE
Q psy17146 615 FPEV--GAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKST 692 (1011)
Q Consensus 615 ~~~~--s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 692 (1011)
.+.. +..+.|.|..++.- + .....+..++|.|.+.|.|.| .|+|+|+|+.+.... .
T Consensus 84 ~g~~~~~~~~~l~V~~~~~~---p-~i~~~~~~v~L~C~~~g~p~p-~i~W~~~g~~l~~~~-----------------~ 141 (176)
T 1hng_A 84 NGTRILNKALDLRILEMVSK---P-MIYWECSNATLTCEVLEGTDV-ELKLYQGKEHLRSLR-----------------Q 141 (176)
T ss_dssp TCCEEEEEEEEEEEECCCCC---C-EEEEETTTTEEEEECSSCSSC-EEEEEETTEEEEEES-----------------S
T ss_pred CCCEEEEEEEEEEEeCCCCC---C-EEEecCCcEEEEEEecCCCCc-EEEEEECCEECCCCC-----------------c
Confidence 4554 77788888764320 1 112234569999999999999 999999999986321 2
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 693 LIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 693 L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+.|.++..+|+|.|+|.|.|.+|..+....|.+
T Consensus 142 ~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 142 KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence 344467789999999999999999988887754
No 203
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.78 E-value=2e-18 Score=177.01 Aligned_cols=173 Identities=21% Similarity=0.344 Sum_probs=121.9
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC--ce------------------ee---cCCCcEEEeecCCCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS--DK------------------VV---GNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~--~~------------------~~---~~~~~L~I~~v~~~d~ 603 (1011)
+.. |..+.+.+|++++|.|.+.+.|.+.+.|+|++. .. .. ....+|.|.+++.+|+
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (210)
T 1lk3_L 4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT 82 (210)
T ss_dssp EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHC
Confidence 444 788999999999999999999999999999531 11 00 1224899999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcC---CCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCe
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKG---RPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDY 678 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~---~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~ 678 (1011)
|.|+|.|.|.........+.|.|.. +|.+.. +....+..|+.++|.|.+.|. |.+..|+|+|||+.+........
T Consensus 83 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~ 162 (210)
T 1lk3_L 83 AIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSV 162 (210)
T ss_dssp EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEE
T ss_pred eEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEcc
Confidence 9999999984322233445677765 577663 333334589999999999985 55458999999998863200001
Q ss_pred EEecCC-cCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEE
Q psy17146 679 SVLEDP-LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVE 720 (1011)
Q Consensus 679 ~~~~~~-~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~ 720 (1011)
....+. ......+.|.|.++..+|+|.|+|.|.|........
T Consensus 163 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 205 (210)
T 1lk3_L 163 TDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVV 205 (210)
T ss_dssp CCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEE
T ss_pred CCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCeee
Confidence 111100 001124589999999999999999999998755433
No 204
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.78 E-value=3.1e-18 Score=177.30 Aligned_cols=173 Identities=13% Similarity=0.124 Sum_probs=124.9
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCC-----CeEEEEecCCce---------------------eec------CCCcEEE
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPA-----PEITWIHEDSDK---------------------VVG------NSPNLTL 595 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~-----p~v~W~k~~~~~---------------------~~~------~~~~L~I 595 (1011)
..++..+.+.+|++++|.|.+.+.|. +.+.|+|++..+ ... .+.+|.|
T Consensus 5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I 84 (222)
T 3sbw_C 5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQI 84 (222)
T ss_dssp BCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEE
T ss_pred ecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEE
Confidence 34566788999999999999988774 389999974111 111 1248999
Q ss_pred eecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecC-CceeeecCCcEEEEEEEEecCCCCeEEEEEC-CeEeccc
Q psy17146 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVECSAFSIPPPEKVTWSYR-GEEIGVG 673 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~-~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~-g~~l~~~ 673 (1011)
.+++.+|+|.|+|.|.| .+.....+.|.|..+|..... ....+..|+.++|.|.+.|.|.| .++|+++ |..+..
T Consensus 85 ~~v~~~D~G~Y~C~~~~--~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p-~i~W~~~~g~~~~~- 160 (222)
T 3sbw_C 85 TDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKA-EVIWTSSDHQVLSG- 160 (222)
T ss_dssp SSCCGGGCEEEEEEEES--SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCC-EEEEEETTCCEECC-
T ss_pred cCcccccCeEEEEEEEe--CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCC-eEEEEECCCceecC-
Confidence 99999999999999998 345677888999877654322 12356789999999999999999 9999998 666542
Q ss_pred CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 674 SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
......... .++....+.+..+..+|.|.|+|.|.|..|.....+.|.|.+
T Consensus 161 -~~~~~~~~~--~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~ 211 (222)
T 3sbw_C 161 -KTTTTNSKR--EEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPE 211 (222)
T ss_dssp -EEEEEECC------CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC
T ss_pred -ccceEEEcC--CCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecC
Confidence 111111111 122222223334456899999999999999999999999864
No 205
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.78 E-value=1.7e-18 Score=180.46 Aligned_cols=176 Identities=22% Similarity=0.343 Sum_probs=133.1
Q ss_pred cCCceEEEcCCCcEEEEEEEecCCC-CeEEEEecCCcee-----------------------------ecCCCcEEEeec
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGNPA-PEITWIHEDSDKV-----------------------------VGNSPNLTLLMT 598 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~p~-p~v~W~k~~~~~~-----------------------------~~~~~~L~I~~v 598 (1011)
..|.++.+.+|+++.|.|.+.+.+. +.+.|+|++.... ...++.|.|.++
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v 84 (231)
T 2pet_A 5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEA 84 (231)
T ss_dssp CCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSC
T ss_pred cCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEccc
Confidence 4577889999999999999999995 8999998764411 344567999999
Q ss_pred CCCCCEEEEEEEEecCCCceeeEEEEEEcCCC---eeec-CCceeeecCCcE-EEEEEE-EecCCCCeEEEEECCeEecc
Q psy17146 599 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRP---TIIS-HRTQFGIPGDTA-RVECSA-FSIPPPEKVTWSYRGEEIGV 672 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P---~i~~-~~~~~v~~G~~v-~L~C~~-~g~p~p~~v~W~~~g~~l~~ 672 (1011)
+.+|+|.|+|.|.|...+..+..+.|.|..+| .+.. +....+..|+.+ +|.|.+ .|.|.| .+.|+++|..+..
T Consensus 85 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p-~i~W~~~~~~~~~ 163 (231)
T 2pet_A 85 QVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAP-KITWYRNGQRLEV 163 (231)
T ss_dssp CGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCC-EEEEEETTEECCC
T ss_pred CcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCC-EEEEEECCccCcc
Confidence 99999999999999444778888899998775 4443 345557789988 999999 899999 9999999999875
Q ss_pred cC--CCCeEEecCCcCc--c---ceeEEEEcCCCCCCCEEEEEEEEc-----CCCC-eEEEEEEEe
Q psy17146 673 GS--SDDYSVLEDPLKE--G---IKSTLIIRESRHDHFGVYNCSVSN-----PYGS-DSVEIMLKP 725 (1011)
Q Consensus 673 ~~--~~~~~~~~~~~~~--~---~~~~L~I~~~~~~d~G~Y~C~a~N-----~~G~-~~~~~~l~V 725 (1011)
.. ..++.+....... + ..+.|.|.....+|.|.|+|.|.| ..|. .+..+.|.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 164 PVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp CSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred ccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence 32 1344444321111 1 136788886666679999999999 4555 556666654
No 206
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.78 E-value=4.7e-18 Score=174.51 Aligned_cols=173 Identities=13% Similarity=0.191 Sum_probs=127.5
Q ss_pred ecCcEEEEEEEcC--CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeCCCCCcc
Q psy17146 41 VGSRVTLPCRVID--KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPA 118 (1011)
Q Consensus 41 ~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~ 118 (1011)
.|+.+.|.|.+.+ +.+.+.|+|++..+.. .+|+.+..++ +.++|.|.+++.+|+|.|+|.+.+.. +
T Consensus 16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~------~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~~~n~~----~ 83 (212)
T 2r15_A 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY------SDRVKTGVTG--EQIWLQINEPTPNDKGKYVMELFDGK----T 83 (212)
T ss_dssp CSSEEEEEEEBSSCCSSCEEEEEETTEECCC------CSSEEEEEET--TEEEEEEESCCGGGCEEEEEEEECSS----C
T ss_pred cCceEEEEEEEeccCCCceEEEEECCEEccC------CCeEEEEEeC--CEEEEEECCCCcccCEEEEEEEecCC----c
Confidence 6788888898886 4679999999987643 2566665443 45689999999999999999999853 2
Q ss_pred eeeeEEEEEEEc------------------CCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeece
Q psy17146 119 IRSRFATLTVLV------------------PPDPPRIV-QGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNV 179 (1011)
Q Consensus 119 ~~s~~~~l~V~~------------------~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~ 179 (1011)
.....+.|.|.. .+.++.+. .+..+.+.+|+.+.|.|. +.|+|.+.+.|+|++..+..+.
T Consensus 84 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~-~~g~p~p~v~W~~~~~~~~~~~ 162 (212)
T 2r15_A 84 GHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCN-VWGDPPPEVSWLKNEKALAQTD 162 (212)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEE-EECSSCCEEEEEETTEEECCCS
T ss_pred ceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEE-EcCCCCceEEEEECCeECccCC
Confidence 334444554431 01222333 234678899999999999 6799999999999998887765
Q ss_pred eEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEE
Q psy17146 180 RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233 (1011)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~ 233 (1011)
++......+. .+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 163 ~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~N~~g~~--~~~~~l~V~ 209 (212)
T 2r15_A 163 HCNLKFEAGR-----TAYFTINGVSTADSGKYGLVVKNKYGSE--TSDFTVSVF 209 (212)
T ss_dssp SEEEEEETTT-----EEEEEESSCCGGGCEEEEEEEEETTEEE--EEEEEEEEE
T ss_pred CEEEEEcCCC-----EEEEEEcCcchHHCeEEEEEEEcCCCcE--EEEEEEEEE
Confidence 5544443232 2689999999999999999999999876 445555554
No 207
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.78 E-value=4.5e-20 Score=205.44 Aligned_cols=188 Identities=21% Similarity=0.241 Sum_probs=144.6
Q ss_pred CCcEEEEEEEcCCccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee-------eccC
Q psy17146 364 HDSIVKCEVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNS 436 (1011)
Q Consensus 364 d~G~Y~C~a~n~~g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~ 436 (1011)
+.|.|+|.+.+... ...+.+-.+|.+...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++.... ....
T Consensus 136 ~~~~~~C~~~~~l~----~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~ 211 (347)
T 2ifg_A 136 PEQKLQCHGQGPLA----HMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPS 211 (347)
T ss_dssp GGGCCCCSSSSCSS----CCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSE
T ss_pred cccCCCCCCChHHh----cCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceeccc
Confidence 56899998876322 122233457888888888899999999999999999999999999986532 2345
Q ss_pred CcEEEEeeccCCCe-EEEEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeE
Q psy17146 437 PNLTLLMTSDDLAG-RYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEE 515 (1011)
Q Consensus 437 ~~L~I~~v~~~d~G-~Y~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~ 515 (1011)
+.|.|.+++.+|+| .|+|.|.|..+
T Consensus 212 ~~L~i~~v~~~D~G~~Y~C~a~n~~g------------------------------------------------------ 237 (347)
T 2ifg_A 212 LGLTLANVTSDLNRKNVTCWAENDVG------------------------------------------------------ 237 (347)
T ss_dssp EEEEEESCCSTTTTCCEEECCEETTE------------------------------------------------------
T ss_pred ceEEEeeCChHHCCCeEEEEEEcCCC------------------------------------------------------
Confidence 67999999999999 99999997532
Q ss_pred eeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec-------
Q psy17146 516 IGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG------- 588 (1011)
Q Consensus 516 i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~------- 588 (1011)
.....+.|.|..+|.+ ....+.+|+.++|.|.+.|.|.|.++|+|+|..+...
T Consensus 238 ----------------~~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~ 297 (347)
T 2ifg_A 238 ----------------RAEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEF 297 (347)
T ss_dssp ----------------ECCEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE
T ss_pred ----------------CEEEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEE
Confidence 2222333344445554 1122357899999999999999999999998543311
Q ss_pred ---------CCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC
Q psy17146 589 ---------NSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 589 ---------~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P 630 (1011)
..++|+|.+++.+|+|.|+|+|.| ..|..+..+.|.|.++|
T Consensus 298 ~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N-~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 298 LEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN-PFGQASASIMAAFMDNP 347 (347)
T ss_dssp CCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEE-TTEEEEEEEEECSCCCC
T ss_pred EeecCCCcccceEEEECCCCcccCceEEEEEec-CCCceeeEEEEEecCCC
Confidence 145699999999999999999999 68889999999998876
No 208
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.78 E-value=1.9e-18 Score=170.63 Aligned_cols=164 Identities=20% Similarity=0.266 Sum_probs=126.9
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCC--CCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.|.+.+.|..+.+.+|++++|.|.+.+. .+.+.|+|++..+... ...+.|.+++.+|+|.
T Consensus 4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~------------------~~~~~~~~~~~~d~G~ 65 (170)
T 3ry4_A 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------------------TQPSYRFKANNNDSGE 65 (170)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC------------------CSSEEEEECCGGGCEE
T ss_pred CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC------------------ccceEEEecccccCeE
Confidence 4667888999999999999999999984 5689999999776421 1247788999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
|+|.+.+.. .+..+.|.|..++ .+...+...+.+|+.+.|.|.+..+.|.+.+.|+|++..+...
T Consensus 66 Y~C~~~~~~------~s~~~~l~v~~~~---~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~------ 130 (170)
T 3ry4_A 66 YTCQTGQTS------LSDPVHLTVLFEW---LVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS------ 130 (170)
T ss_dssp EEEEETTSB------CCCCEEEEEECCS---EEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE------
T ss_pred EEEEEeCCC------ceEeEEEEEECCc---eEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc------
Confidence 999998642 3445778887643 4444556678899999999995577788999999988765321
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v 232 (1011)
.. ...|.|.+++.+|+|.|+|.|.|..|.. .+..+.|.|
T Consensus 131 --~~------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~s~~~~l~V 169 (170)
T 3ry4_A 131 --HL------DPTFSIPQANHSHSGDYHCTGNIGYTLF-SSKPVTITV 169 (170)
T ss_dssp --SS------CCEEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEE
T ss_pred --CC------CCeEEEEeccccCCEEEEEEEEeCcCcc-ccccEEEEE
Confidence 11 1479999999999999999999988742 344555544
No 209
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.78 E-value=7e-19 Score=179.14 Aligned_cols=153 Identities=22% Similarity=0.362 Sum_probs=113.5
Q ss_pred EcCCCcEEEEEEEecCCCCeEEEEecCCceee--cCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEc------
Q psy17146 556 VDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--GNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLK------ 627 (1011)
Q Consensus 556 v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~------ 627 (1011)
+.+|++++|.|.+ |.+.+.|+|+|..+.. ..+++|.|.+++.+|+|.|+|.+.+. .+..+.|.|.
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~~~~~~L~i~~v~~~DsG~Y~C~~~~~----~s~~~~v~v~~~~~~~ 87 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQN----KSKPLQVYYRMGSADD 87 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEEESSCCCEEEEEGGGCCEEEEEEESSSS----CCCCEEEEEEC-----
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCCCCCCCeEEeCCCCcCCCEEEEEEecCC----CCeeEEEEEEEecccc
Confidence 3689999999998 7899999999977653 45688999999999999999997652 2223555554
Q ss_pred ---------------------C----CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEec
Q psy17146 628 ---------------------G----RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLE 682 (1011)
Q Consensus 628 ---------------------~----~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~ 682 (1011)
. ++.+...+.....+|++++|.|. |.|.| .+.|+|+|..+......+.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~--g~p~p-~i~W~k~~~~l~~~~~~~~~~~~ 164 (204)
T 1sy6_A 88 AKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP--QYPGS-EILWQHNDKNIGGDEDDKNIGSD 164 (204)
T ss_dssp -------------------------------CCCCEEEEETTEEEEECS--CCCSS-CEEEEETTEEESCCTTCTTEEEE
T ss_pred ccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC--CCCCC-ceEEEECCEECCCccCCceEecC
Confidence 1 23333323333348999999998 88999 89999999998643222222211
Q ss_pred CCcCccceeEEEEcCC-CCCCCEEEEEEEEcCCCC-eEEEEEEEe
Q psy17146 683 DPLKEGIKSTLIIRES-RHDHFGVYNCSVSNPYGS-DSVEIMLKP 725 (1011)
Q Consensus 683 ~~~~~~~~~~L~I~~~-~~~d~G~Y~C~a~N~~G~-~~~~~~l~V 725 (1011)
.+.|.|.++ ..+|+|.|+|.|.|..|. .+..+.|.+
T Consensus 165 -------~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 165 -------EDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp -------TTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred -------CCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 368999999 999999999999999996 367777765
No 210
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.78 E-value=3.8e-18 Score=180.78 Aligned_cols=191 Identities=17% Similarity=0.261 Sum_probs=132.0
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCC------CeeEEeeCCeecCCc--------ccCCCCcceEEeecCCCceeEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKT------GVLQWTKDDFALGPH--------RNLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~------~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~~~~~~~L 92 (1011)
++.+...|.++.+.+|++|+|.|.+.+.. +.+.|+|++...... ......+|+.+.. ..+.++|
T Consensus 38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L 115 (254)
T 2c1o_A 38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSG--SGTDFTL 115 (254)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEE
T ss_pred ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEec--CCCEEEE
Confidence 56788889999999999999999998854 789999854211000 0111235777654 3456799
Q ss_pred EEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCC-cEEEEEe
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPP-AEITWID 170 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k 170 (1011)
+|.+++.+|+|.|+|.+.+... ......+.|.|.....+|.+.. .+.....+|+.+.|.|.+.+..|+ +.++|+|
T Consensus 116 ~I~~v~~~D~G~Y~C~a~n~~~---~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k 192 (254)
T 2c1o_A 116 KISRVEAEDLGIYYCVQGSHFP---PTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI 192 (254)
T ss_dssp EESSCCGGGCSEEEEEECSSSS---CEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EECcCCcccCEEEEEEEEcCcc---eEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEE
Confidence 9999999999999999987532 1223345777876555555542 222233457899999994443565 5799999
Q ss_pred CCceeeeceeEEEee-ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 171 GTGTVMSNVRVTEEA-SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 171 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++..+..+....... ......+...+.|.|.++..+|+|.|+|.|.|.....
T Consensus 193 ~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 193 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 245 (254)
T ss_dssp SSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred CCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence 998876651111111 1122244556899999999999999999999987654
No 211
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=174.96 Aligned_cols=171 Identities=21% Similarity=0.258 Sum_probs=131.4
Q ss_pred eeCCCceEecCCCcEEEEee-cCCCCC-CceEEEeCCCcee---------eccCCcEEEEeeccCCCeEEEEEEEEcCCc
Q psy17146 394 RARPYSVQVDRGAGVNLLCD-VDGNPA-PEITWIHEDSDKV---------VGNSPNLTLLMTSDDLAGRYYCKASVMGFP 462 (1011)
Q Consensus 394 ~~~p~~~~v~~G~~v~l~C~-~~g~p~-p~v~W~k~~~~~~---------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 462 (1011)
...+....+.+|+.+.|.|. +.+.|. +.+.|+|++.... ......|.|.+++.+|+|.|+|.+.|..+.
T Consensus 12 ~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~ 91 (201)
T 3s97_C 12 PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSIT 91 (201)
T ss_dssp SSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGT
T ss_pred cCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCC
Confidence 34557889999999999999 889999 9999999985542 335678999999999999999999984332
Q ss_pred cee--eEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEE
Q psy17146 463 EVG--AEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLD 540 (1011)
Q Consensus 463 ~~s--~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~ 540 (1011)
... ..+.+.+..... .
T Consensus 92 ~~~~~~~~~~~~~~~~~--------------------------------------------------------------~ 109 (201)
T 3s97_C 92 KSVFSKFIPLIPIPERT--------------------------------------------------------------T 109 (201)
T ss_dssp EEEECCCEEEEEECCSS--------------------------------------------------------------C
T ss_pred cchhhcccceeeccccc--------------------------------------------------------------c
Confidence 221 122222211000 0
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-----ecCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-----VGNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
...+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+. ...++.|.|.++..+|+|.|+|.|.| ..
T Consensus 110 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n-~~ 188 (201)
T 3s97_C 110 KPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAEN-IR 188 (201)
T ss_dssp CCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEECSCCGGGCEEEEEEEEE-TT
T ss_pred CCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEccCChhhCEEEEEEEEe-cC
Confidence 1134556655567889999999999999999999999999986443 34567999999999999999999999 67
Q ss_pred CceeeEEEEEEc
Q psy17146 616 PEVGAEATVYLK 627 (1011)
Q Consensus 616 ~~~s~~~~l~V~ 627 (1011)
|..+..+.|.|+
T Consensus 189 g~~~~~~~l~V~ 200 (201)
T 3s97_C 189 GKDKHQARIYVQ 200 (201)
T ss_dssp EEEEEEEEEEEE
T ss_pred CceeeeEEEEEe
Confidence 788888888875
No 212
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.77 E-value=3.7e-18 Score=175.52 Aligned_cols=190 Identities=18% Similarity=0.257 Sum_probs=133.9
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCC-CCeeEEeeCCeecCC--------cccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDK-TGVLQWTKDDFALGP--------HRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~-~~~v~W~k~~~~l~~--------~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+.+...|..+.+.+|++|+|.|.+.+. .+.+.|+|++..... .......+|+.+.. ..+.++|+|.+++
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~ 79 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG--SGRDSSFTISSLE 79 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCC
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec--cCCEEEEEECCCC
Confidence 456777899999999999999999984 679999985321110 01111245777763 3467799999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCC-CcEEEEEeCCceee
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKP-PAEITWIDGTGTVM 176 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P-~~~i~W~k~~~~l~ 176 (1011)
.+|+|.|+|.+.+... ......+.|.|.....+|.+.. .+...+.+|+.+.|.|.+.++.| .+.++|+|++..+.
T Consensus 80 ~~D~G~Y~C~~~~~~~---~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~ 156 (213)
T 3r06_A 80 SEDIGSYYCQQYYNYP---WTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKR 156 (213)
T ss_dssp GGGCSEEEEEECSSSS---CEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred cccCEEEEEecccCCc---eEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccC
Confidence 9999999999987532 2234457788865556666543 33444557888999999544444 45899999998876
Q ss_pred ece-eEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 177 SNV-RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 177 ~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+. ............+...+.|.|.....+|+|.|+|.|.|.....
T Consensus 157 ~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~ 203 (213)
T 3r06_A 157 DGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA 203 (213)
T ss_dssp TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred CceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence 543 2221222233356666889999999999999999999987654
No 213
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.77 E-value=3.2e-18 Score=182.96 Aligned_cols=214 Identities=15% Similarity=0.189 Sum_probs=129.1
Q ss_pred cceeecCCceeEEecCcEEEEEEEc---C-CCCeeEEeeCCeecCCccc------------CCCCcceEEeecCCCceeE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVI---D-KTGVLQWTKDDFALGPHRN------------LSGFDRYAMIGSDEEGDYS 91 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~---~-~~~~v~W~k~~~~l~~~~~------------~~~~~r~~i~~~~~~~~~~ 91 (1011)
+.+...+.++.+.+|++|+|.|.+. + +.+.+.|+|++........ -...+|+.+..+...++.+
T Consensus 6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 85 (268)
T 3mj6_A 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS 85 (268)
T ss_dssp ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence 5678888999999999999999998 2 4457999997643321100 0112577776555566689
Q ss_pred EEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEc--cCCCCCcEEEEE
Q psy17146 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECIS--ANGKPPAEITWI 169 (1011)
Q Consensus 92 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~--~~g~P~~~i~W~ 169 (1011)
|.|.+++.+|+|.|+|.+.+.... ...+..+.|.|. +.. +..+.+.+|+.+.|.|.+ ..+.|.+.+.|+
T Consensus 86 L~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~~~~l~V~--~~~-----p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~ 156 (268)
T 3mj6_A 86 LLLQDVQKADEGIYTCEIRLKNES--MVMKKPVELWVL--PEE-----PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWM 156 (268)
T ss_dssp EEECSCCGGGCEEEEEEEEETTCC--CEEEEEEEEEEE--CCC-----CSEEEEETTCCEEECCBCEESSSSCCCEEEEE
T ss_pred EEECCCCHhHCEEEEEEEEecCCc--ceEEEEEEEEEe--ccC-----CCccccccCCcEEEEEEecCCCCCCccceEEE
Confidence 999999999999999999985322 234455666665 222 236678899999999994 278899999999
Q ss_pred eCCceeee-ceeEEEe-------eecCC----ce------EEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEE
Q psy17146 170 DGTGTVMS-NVRVTEE-------ASVDG----RR------TTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLL 231 (1011)
Q Consensus 170 k~~~~l~~-~~~~~~~-------~~~~~----~~------~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~ 231 (1011)
|+++.... ....... ...++ +. ....++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~--~~~~~l~ 234 (268)
T 3mj6_A 157 FSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLES--RKTIVLH 234 (268)
T ss_dssp EECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEE--EEEEEEE
T ss_pred ecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceE--EEEEEEE
Confidence 95443221 1111000 00000 00 0113589999999999999999999977754 5666666
Q ss_pred EEeCCceEEEecCcceeecCc
Q psy17146 232 VKYAPKVQVSVIGSNRLVEGT 252 (1011)
Q Consensus 232 v~~~P~~~~~~~~~~~v~~g~ 252 (1011)
|...|......+....+.+|+
T Consensus 235 V~~~~p~~~~~p~~~~~~~~q 255 (268)
T 3mj6_A 235 VVQDEFQRTISPTPPTDKGQQ 255 (268)
T ss_dssp EECC-----------------
T ss_pred EEcCCCeeeeCCCCCCCCcce
Confidence 643333222223333444444
No 214
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.77 E-value=7.4e-18 Score=176.11 Aligned_cols=186 Identities=15% Similarity=0.135 Sum_probs=134.5
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
..|.|...|.. .+.+|++|+|.|.+......+.|+|++..+..... +. .......+|.|.+++.+|+|.|
T Consensus 6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~~~~~~~w~k~g~~~~~~~~-----~~----~~~~~~~~L~I~~v~~~DsG~Y 75 (242)
T 1p6f_A 6 PKPFIWAEPHF-MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRP-----KP----PERINKVKFYIPDMNSRMAGQY 75 (242)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTTCCEEEEEETTEEEEEECC-----SS----CTTCCEEEEEECSCCGGGCEEE
T ss_pred CCCEEEeeCCC-ccCCCCcEEEEEeeCCCCcEEEEEECCCccccccc-----cc----cCCcceeEEEecCCCcccCeEE
Confidence 45788888988 89999999999999877678999999976531100 00 0122345899999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEee
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEA 185 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~ 185 (1011)
+|.+.+... ....+..+.|.|.....+|.+...+...+.+|+.++|.|. +.+. .+.+.|+|++..+.....
T Consensus 76 ~C~~~~~~~--~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~-~~~~-~~~~~w~k~g~~~~~~~~----- 146 (242)
T 1p6f_A 76 SCIYRVGEL--WSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCR-LDTA-TSMFLLLKEGRSSHVQRG----- 146 (242)
T ss_dssp EEEEEETTE--ECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEE-CTTS-CSEEEEEECSSSCEEEEE-----
T ss_pred EEEEecCCc--cccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEe-cCCC-CCEEEEEECCCccCcccc-----
Confidence 999976421 1224667889998766666766544556789999999999 4444 459999999887654110
Q ss_pred ecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC-CCceeEEEEEEEEEeC
Q psy17146 186 SVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA-DRTYKVARLKLLVKYA 235 (1011)
Q Consensus 186 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~-g~~~~s~~v~v~v~~~ 235 (1011)
... ....|.|.+++.+|+|.|+|.+.|.. .....+..+.|.|...
T Consensus 147 ~~~-----~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 147 YGK-----VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD 192 (242)
T ss_dssp ECS-----SEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred CCC-----ceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence 111 13689999999999999999999874 1223456677777653
No 215
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.77 E-value=5.8e-18 Score=174.49 Aligned_cols=188 Identities=16% Similarity=0.246 Sum_probs=128.0
Q ss_pred eeecCCceeEEecCcEEEEEEEc-CC--CCeeEEeeCCeecCC--------cccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVI-DK--TGVLQWTKDDFALGP--------HRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~-~~--~~~v~W~k~~~~l~~--------~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
|.. |.++.+.+|++|+|.|.+. ++ .+.+.|+|++..... .......+|+.+.. ..+.++|+|.+++
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~ 80 (216)
T 2xzc_L 4 LTQ-PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK--SGTSATLGITGLQ 80 (216)
T ss_dssp BBC-CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCC
T ss_pred EEC-CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec--cCCEEEEEECCCC
Confidence 444 7889999999999999964 43 468999996521110 00011235777654 3456799999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCceee
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWIDGTGTVM 176 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~l~ 176 (1011)
.+|+|.|+|.+.+... .......+.|+|...+.+|.+.. .+.....+|+.+.|.|.+.++.|.+ +++|+|++..+.
T Consensus 81 ~~D~G~Y~C~~~~~~~--~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~ 158 (216)
T 2xzc_L 81 TGDEADYYCGTWDSSL--NPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS 158 (216)
T ss_dssp GGGCEEEEEEEECTTS--CEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred cccCEEEEEEEEeCCC--cceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecC
Confidence 9999999999998542 01233446788866555565543 2222234688999999955446765 999999998876
Q ss_pred eceeEEEe-eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 177 SNVRVTEE-ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 177 ~~~~~~~~-~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+...... .......+...+.|.|.++..+|+|.|+|.|.|.....
T Consensus 159 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 205 (216)
T 2xzc_L 159 GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 205 (216)
T ss_dssp SSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred CCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence 55111111 11222345566799999999999999999999987654
No 216
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.77 E-value=5.4e-19 Score=177.24 Aligned_cols=144 Identities=15% Similarity=0.227 Sum_probs=111.6
Q ss_pred EEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEee-cCCCCCEEEEEEEEecCCCceeeEEEEEEcC--CC
Q psy17146 554 VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLM-TSDDLAGRYYCKASVMGFPEVGAEATVYLKG--RP 630 (1011)
Q Consensus 554 ~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~-v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~--~P 630 (1011)
....+|+.++|.|.+.+ +. .++|+|+|..+....+++|.|.+ +..+|+|.|+|.|.| ..+..+..+.+.|.. +|
T Consensus 9 ~v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~~~~L~I~~~~~~~D~G~Y~C~a~n-~~g~~~~~~~~~v~~~~~~ 85 (186)
T 1jbj_A 9 KVSISGTSVELTCPLDS-DE-NLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPA-SNKNTYLYLKARVGSADDA 85 (186)
T ss_dssp EEEEETTEEEEECSSCC-CT-TCEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECSS-CCCCCCEEECCCCCSCCCC
T ss_pred EEEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCCCCEEEECCCCccccCEEEEEEEEe-CCCcEEEEEEEEEeccccc
Confidence 34578999999999988 44 49999999877666778999999 999999999999999 445555555555432 22
Q ss_pred ee----------------ecC-----Cc---eeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcC
Q psy17146 631 TI----------------ISH-----RT---QFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLK 686 (1011)
Q Consensus 631 ~i----------------~~~-----~~---~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~ 686 (1011)
.. ... .. ..+.+|++++|.|.+ |.| .|+|+|||..+.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p-~i~W~k~g~~i~~~~~----------- 150 (186)
T 1jbj_A 86 KKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDK-TIKWLKDGSIISPLNA----------- 150 (186)
T ss_dssp CCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCS-CEEEEETTEECCCSSC-----------
T ss_pred ccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCC-eEEEEECCEECcccCC-----------
Confidence 21 100 01 224499999999998 888 9999999999863211
Q ss_pred ccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 687 ~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 151 --~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 151 --TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp --CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred --CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 24689999999999999999999999976
No 217
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.77 E-value=1.6e-18 Score=179.43 Aligned_cols=191 Identities=23% Similarity=0.303 Sum_probs=131.5
Q ss_pred CceeEEecCcEEEEEEEcCCC------CeeEEeeCCeecCCcc-------cCCCCcceEEeecC-CCceeEEEEeecccC
Q psy17146 35 QDQTAVVGSRVTLPCRVIDKT------GVLQWTKDDFALGPHR-------NLSGFDRYAMIGSD-EEGDYSLEIYPVMLD 100 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~~------~~v~W~k~~~~l~~~~-------~~~~~~r~~i~~~~-~~~~~~L~I~~v~~~ 100 (1011)
+.+.+.+|++|+|.|.+.+.. ..+.|++++....... .....+|+.+..+. ..+.++|.|.+++.+
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~ 82 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT 82 (222)
T ss_dssp CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence 457889999999999988742 5899999874431100 01123455554322 234668999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeec-e
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSN-V 179 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~-~ 179 (1011)
|+|.|+|.+.+.. ..+..+.|.|..++..+.+...+...+.+|+.+.|.|.+..+.|.+.+.|+++++..... .
T Consensus 83 D~G~Y~C~~~~~~-----~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~ 157 (222)
T 4i0k_A 83 DEGSYTCFVSIQD-----FDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNV 157 (222)
T ss_dssp GCSCEEEEEEECC-----CCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEE
T ss_pred cCEEEEEEEEeCC-----CceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCc
Confidence 9999999999752 234557788888877788776666677899999999995489999999999965554442 2
Q ss_pred eEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeCC
Q psy17146 180 RVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYAP 236 (1011)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~P 236 (1011)
........++. ...|.|.++..+|+|.|+|.|.|..|.. ...+.|.|..+|
T Consensus 158 ~~~~~~~~~~~----~~~l~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p 208 (222)
T 4i0k_A 158 TTSQMANERGL----FDVHSVLRVVLGANGTYSCLVRNPVLQQ--DAHGSVTITGQP 208 (222)
T ss_dssp EEEEEECTTSC----EEEEEEEEEECCTTCEEEEEEEETTTTE--EEEEEEECCC--
T ss_pred ceeEEcCCCCe----EEEEEEEEEEeCCCCEEEEEEECCCCCC--ceEEEEEEeCCc
Confidence 32222222321 2468899999999999999999999987 455556565555
No 218
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.76 E-value=5.6e-18 Score=175.38 Aligned_cols=195 Identities=21% Similarity=0.378 Sum_probs=135.7
Q ss_pred cCCceeEEecCcEEEEEEEcCCC-C---eeEEeeCCeecCC----------cccCCCCcceEEee-----cCCCceeEEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT-G---VLQWTKDDFALGP----------HRNLSGFDRYAMIG-----SDEEGDYSLE 93 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~-~---~v~W~k~~~~l~~----------~~~~~~~~r~~i~~-----~~~~~~~~L~ 93 (1011)
.|.++++.+|++|+|.|.+.++. + .|.|+|++..+.. .......+|..+.. ....+.++|+
T Consensus 7 vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~ 86 (225)
T 4fmk_A 7 VLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLA 86 (225)
T ss_dssp CCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEE
T ss_pred eCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEE
Confidence 35678999999999999998743 3 4899998754311 01111223333322 2234567899
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCc
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTG 173 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~ 173 (1011)
|.+++.+|+|.|+|.+.+... ........+.+..++. ...........+++.+.+.|.+..+.|++.+.|++++.
T Consensus 87 I~~v~~~D~G~Y~C~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~ 161 (225)
T 4fmk_A 87 FRGLRVEDEGNYTCEFATFPN---GTRRGVTWLRVIAQPE--NHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLG 161 (225)
T ss_dssp ECSCCGGGCEEEEEEEEEETT---EEEEEEEEEEEEBCCE--EEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSC
T ss_pred EccCCHHHCcceEEEEEeCCC---cceeeeeeeeeecCCc--eeecccceeecceeeeeeeeeecCCCCCCEEEEEECCc
Confidence 999999999999999987532 2234445555555443 22223344456778888888878889999999999988
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEEeC
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVKYA 235 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~~~ 235 (1011)
.+...... .......+...+.|.|.++..+|+|.|+|.|.|..+....+..+.|.|.+.
T Consensus 162 ~~~~~~~~---~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y~ 220 (225)
T 4fmk_A 162 GEAKDTQE---PGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRYH 220 (225)
T ss_dssp CEEEEEEE---ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTTC
T ss_pred cccCCcce---EEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEEC
Confidence 77654333 222333455667899999999999999999999999887778888877653
No 219
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.76 E-value=5.7e-18 Score=173.95 Aligned_cols=186 Identities=18% Similarity=0.259 Sum_probs=127.0
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-C---CCeeEEeeCCe--ecC--C----cccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-K---TGVLQWTKDDF--ALG--P----HRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~---~~~v~W~k~~~--~l~--~----~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
+.. |..+.+.+|++|+|.|.+.+ + .+.+.|+|++. .+. . .......+|+.+.. ..+.++|+|.++
T Consensus 4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v 80 (212)
T 1q0x_L 4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGDKAALTITGA 80 (212)
T ss_dssp EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSC
T ss_pred EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe--eCCEEEEEECCC
Confidence 455 88999999999999999987 3 36899999742 210 0 00011235776654 245679999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-CCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCce
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP-DPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWIDGTGT 174 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~ 174 (1011)
+.+|+|.|+|.+.+... ...+..+.|.|...+ .+|.+.. .+...+.+|+.+.|.|.+.+..|++ .++|+|++..
T Consensus 81 ~~~D~G~Y~C~~~~~~~---~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~ 157 (212)
T 1q0x_L 81 QTEDEAIYFCALWSNNK---LVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTP 157 (212)
T ss_dssp CGGGCEEEEEEEECSSC---EEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred CccCCEEEEEEEecCch---hhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEe
Confidence 99999999999988532 122344677775433 3455432 2333345789999999954445554 9999999888
Q ss_pred eeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 175 VMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
+..+.............+...+.|.|.++..+|+|.|+|.|.|....
T Consensus 158 l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (212)
T 1q0x_L 158 VTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS 204 (212)
T ss_dssp ECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred CCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence 76553321112222335556678999999999999999999997553
No 220
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.76 E-value=2.5e-18 Score=177.49 Aligned_cols=191 Identities=19% Similarity=0.307 Sum_probs=126.9
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCC--CCeeEEeeCCeecCC------------cccCCCCcceEEeecCCCceeEEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDK--TGVLQWTKDDFALGP------------HRNLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~~~~l~~------------~~~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
+.+...| .+.+.+|++|+|.|.+.+. .+.+.|+|....-.. .......+|+.+.. ..+.++|+
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~ 78 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS--SGADRYLS 78 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE--ETTEEEEE
T ss_pred CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec--CCceEEEE
Confidence 4566667 9999999999999999875 568999994311000 00111225777665 34677999
Q ss_pred EeecccCCCceEEEEEEeCCCCC-cceeeeEEEEEEEcCC-CCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEE
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGE-PAIRSRFATLTVLVPP-DPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWI 169 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~-~~~~s~~~~l~V~~~p-~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~ 169 (1011)
|.+++.+|+|.|+|.+.+..+.. ....+..+.|+|...+ .+|.+.. .+...+.+|+.+.|.|.+.++.|.+ .++|+
T Consensus 79 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~ 158 (218)
T 3s96_B 79 ISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWK 158 (218)
T ss_dssp ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred EccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEE
Confidence 99999999999999998853210 1134455788888655 4455432 3333445678999999955447877 99999
Q ss_pred eCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 170 DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 170 k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
|++..+..+.........+ ..+...+.|.|.....+|+|.|+|.|.|..+..
T Consensus 159 k~g~~l~~~~~~~~~~~~~-~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~ 210 (218)
T 3s96_B 159 ANGTPITQGVDTSNPTKEG-NKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTV 210 (218)
T ss_dssp ETTEEC---------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEE
T ss_pred ECCEECcCceecCcccccC-CcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcc
Confidence 9998876533222122222 234445779999999999999999999987643
No 221
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.76 E-value=4.6e-18 Score=172.96 Aligned_cols=162 Identities=20% Similarity=0.214 Sum_probs=120.9
Q ss_pred EecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee----------cCCCcEEEeecCCCCCEEEEEEEE
Q psy17146 542 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------GNSPNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 542 ~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~----------~~~~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
..+|.|...|. ..+.+|++++|.|.+. .+.+.+.|+|+|..+.. ...+.|.|.+++.+|+|.|+|.|.
T Consensus 6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~ 83 (201)
T 1nkr_A 6 HRKPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS 83 (201)
T ss_dssp -CCCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence 34677777776 6789999999999997 47789999999976431 234789999999999999999998
Q ss_pred ecC----CCceeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCC
Q psy17146 612 VMG----FPEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP 684 (1011)
Q Consensus 612 n~~----~~~~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~ 684 (1011)
|.. ....+..+.|.|.+ +|.|...+...+.+|+.++|.|.+.+ +.+ .+.|+|+|..+.... .......
T Consensus 84 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~-~~~-~~~w~k~g~~~~~~~--~~~~~~~- 158 (201)
T 1nkr_A 84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRS-SYD-MYHLSREGEAHERRL--PAGPKVN- 158 (201)
T ss_dssp BTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESS-CCS-EEEEEETTCSSCEEE--ECEEEET-
T ss_pred cCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCC-CCc-eEEEEECCcccCccc--ccccccC-
Confidence 732 23456677788864 47776444457899999999999886 456 899999998765311 1111110
Q ss_pred cCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 685 LKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 685 ~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
......|.|.+++ |+|.|+|.|.|..
T Consensus 159 --~~~~~~L~i~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 159 --GTFQADFPLGPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp --TEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred --CceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence 1225789999998 9999999999763
No 222
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.76 E-value=4e-18 Score=175.08 Aligned_cols=174 Identities=16% Similarity=0.238 Sum_probs=122.0
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCC---CCeEEEEecCC--ce------------------ee---cCCCcEEEeecCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNP---APEITWIHEDS--DK------------------VV---GNSPNLTLLMTSD 600 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p---~p~v~W~k~~~--~~------------------~~---~~~~~L~I~~v~~ 600 (1011)
+.. |..+.+.+|++++|.|.+.+.| .+.+.|+|++. .. .. ....+|+|.+++.
T Consensus 4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 82 (212)
T 1q0x_L 4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQT 82 (212)
T ss_dssp EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCc
Confidence 445 7888999999999999999988 47999999742 11 00 1234899999999
Q ss_pred CCCEEEEEEEEecCCCceeeEEEEEEc----CCCeeec-CCceeeecCCcEEEEEEEEecC-CCCeEEEEECCeEecccC
Q psy17146 601 DLAGRYYCKASVMGFPEVGAEATVYLK----GRPTIIS-HRTQFGIPGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGS 674 (1011)
Q Consensus 601 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~----~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p-~p~~v~W~~~g~~l~~~~ 674 (1011)
+|+|.|+|.|.|.........+.|.|. .+|.+.. +....+..|+.++|.|.+.|.+ .+..|+|+|||+.+..+.
T Consensus 83 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~ 162 (212)
T 1q0x_L 83 EDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGM 162 (212)
T ss_dssp GGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred cCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCe
Confidence 999999999998432223345567773 5677763 3333455799999999999864 445899999999986421
Q ss_pred CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 675 SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
................+.|.|..+..+|.|.|+|.|.|..+....++
T Consensus 163 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v 209 (212)
T 1q0x_L 163 ETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL 209 (212)
T ss_dssp EECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred ecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence 00000111100011346899999999999999999999987655444
No 223
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.76 E-value=3.6e-18 Score=176.29 Aligned_cols=175 Identities=17% Similarity=0.244 Sum_probs=123.1
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecC-CCCeEEEEecCC---c---------------------ee---ecCCCcEEEe
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGN-PAPEITWIHEDS---D---------------------KV---VGNSPNLTLL 596 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~-p~p~v~W~k~~~---~---------------------~~---~~~~~~L~I~ 596 (1011)
|.+...| .+.+.+|++++|.|.+.+. |.+.+.|+|... . .. .....+|+|.
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 80 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS 80 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence 4566667 8899999999999999999 999999999421 1 00 1123469999
Q ss_pred ecCCCCCEEEEEEEEecCC----CceeeEEEEEEc----CCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEEC
Q psy17146 597 MTSDDLAGRYYCKASVMGF----PEVGAEATVYLK----GRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYR 666 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~----~~~s~~~~l~V~----~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~ 666 (1011)
+++.+|+|.|+|.|.|... ......+.|.|. .+|.+.. +....+..|+.++|.|.+.|. |.|..|+|+||
T Consensus 81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~ 160 (218)
T 3s96_B 81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKAN 160 (218)
T ss_dssp SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEEC
Confidence 9999999999999998321 134556678887 5677663 444455678999999999984 65658999999
Q ss_pred CeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 667 GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 667 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
|..+..+.........+ ......+.|.|.....+|.|.|+|.|.|..|....++
T Consensus 161 g~~l~~~~~~~~~~~~~-~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 214 (218)
T 3s96_B 161 GTPITQGVDTSNPTKEG-NKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL 214 (218)
T ss_dssp TEEC---------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred CEECcCceecCcccccC-CcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence 99986421111111110 0011235689999988999999999999998766554
No 224
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.76 E-value=6.1e-18 Score=182.88 Aligned_cols=188 Identities=14% Similarity=0.204 Sum_probs=121.2
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCCc-------------ccCCCCcceEEeecCCCceeEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPH-------------RNLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~~-------------~~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
+...|..+.+.+|++|+|.|.+.+. .+.+.|+|+....... ......+|+.+..+...+.++|+
T Consensus 25 ~v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 104 (291)
T 2gki_A 25 QLQQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYME 104 (291)
T ss_dssp EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEE
T ss_pred EEEcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEE
Confidence 3445778999999999999999873 4689999964211000 00011357777654445678999
Q ss_pred EeecccCCCceEEEEEEeCCCC-CcceeeeEEEEEEEcC-----------C--CCCeeec-CCeeeecCCCcEEEEEEcc
Q psy17146 94 IYPVMLDDDARYQCQVSTGILG-EPAIRSRFATLTVLVP-----------P--DPPRIVQ-GDTLYTTEDREIELECISA 158 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~-~~~~~s~~~~l~V~~~-----------p--~~~~i~~-~~~~~v~eg~~v~L~C~~~ 158 (1011)
|.+++.+|+|.|+|.+.+...+ ........+.|+|..+ + .++.+.. +..+.+.+|+.++|.|. +
T Consensus 105 I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~-~ 183 (291)
T 2gki_A 105 LSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCK-S 183 (291)
T ss_dssp ECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEE-E
T ss_pred ECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEE-c
Confidence 9999999999999999885311 1112223457777761 1 1333443 44678899999999999 6
Q ss_pred CCCCCc------EEEEEeCC--cee---eeceeEEEeeecCCceEE----EEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 159 NGKPPA------EITWIDGT--GTV---MSNVRVTEEASVDGRRTT----VKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 159 ~g~P~~------~i~W~k~~--~~l---~~~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
.+.|.+ .+.|+|+. ..+ ...... .......+... ...+|+|.+++.+|+|.|+|.|.|..
T Consensus 184 ~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~-~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 258 (291)
T 2gki_A 184 SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWAST-RESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH 258 (291)
T ss_dssp SSCCEETTTTEECEEEEEECTTSCCEEEEETTTE-ECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCccccccccceeEEEEEECCCCCcEEEEEEccc-CCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence 677765 89999963 211 100000 00000122111 12589999999999999999999853
No 225
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.76 E-value=5.3e-18 Score=178.63 Aligned_cols=205 Identities=19% Similarity=0.162 Sum_probs=122.1
Q ss_pred ecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceee----------ccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 389 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------GNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 389 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~----------~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
.+|.|...|. ..+.+|++|+|.|.+.+ +.+.+.|+|++..... .....|.|.+++.+|+|.|+|.+.|
T Consensus 6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~ 83 (257)
T 1b6u_A 6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV 83 (257)
T ss_dssp CCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEEC
T ss_pred CCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEec
Confidence 3677777776 67899999999999974 5679999999875421 1345799999999999999999986
Q ss_pred cCC----cceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCc
Q psy17146 459 MGF----PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSE 534 (1011)
Q Consensus 459 ~~~----~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~ 534 (1011)
... ...+..+.|.|...+
T Consensus 84 ~~~~~~~s~~S~~~~L~V~~~~---------------------------------------------------------- 105 (257)
T 1b6u_A 84 THSPYQLSAPSDPLDIVITGLY---------------------------------------------------------- 105 (257)
T ss_dssp SSCTTSCCCCCCCEEEEEECSS----------------------------------------------------------
T ss_pred cCCCccccccCCCEEEecccCC----------------------------------------------------------
Confidence 321 122333444432210
Q ss_pred ccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec----------CCCcEEEeecCCCCCE
Q psy17146 535 DSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG----------NSPNLTLLMTSDDLAG 604 (1011)
Q Consensus 535 ~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~----------~~~~L~I~~v~~~d~G 604 (1011)
.+|.+...|. ..+.+|++++|.|.+.+.+ +.+.|+|+|..+... .+..|.|.+++ |+|
T Consensus 106 --------~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G 173 (257)
T 1b6u_A 106 --------EKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGG 173 (257)
T ss_dssp --------CCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCE
T ss_pred --------CCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCceeEEEEecccc--cCE
Confidence 1244444443 2467888888888887754 688899988665421 25689999998 999
Q ss_pred EEEEEEEecC----CCceeeEEEEEEcCCCeeecC--CceeeecCCcEEEEEEEEecCCCCeEEEEECC
Q psy17146 605 RYYCKASVMG----FPEVGAEATVYLKGRPTIISH--RTQFGIPGDTARVECSAFSIPPPEKVTWSYRG 667 (1011)
Q Consensus 605 ~Y~C~a~n~~----~~~~s~~~~l~V~~~P~i~~~--~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g 667 (1011)
.|+|.|.|.. ....+..+.|.|.++|.+..+ .......|..+.|.|.+ |.+.+ .|.|..-+
T Consensus 174 ~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~-~~~~~~~~ 240 (257)
T 1b6u_A 174 TYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAA-EQKLI-SEEDLNLD 240 (257)
T ss_dssp EEEEEEECSSCTTBBCCCCCCEEECCBCCC---------------------------------------
T ss_pred EEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEE-cchHH-HHHHhhhh
Confidence 9999999732 345677899999999987633 23345679999999875 66777 78997643
No 226
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.76 E-value=3.2e-18 Score=175.68 Aligned_cols=174 Identities=16% Similarity=0.289 Sum_probs=125.4
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC--Cce------------------e---ecCCCcEEEeecCCCC
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED--SDK------------------V---VGNSPNLTLLMTSDDL 602 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~--~~~------------------~---~~~~~~L~I~~v~~~d 602 (1011)
.+...+ .+.+.+|++++|.|.+. +.+.+.|+|+. ... . .....+|+|.+++.+|
T Consensus 3 ~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 79 (211)
T 3tv3_L 3 ALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDD 79 (211)
T ss_dssp CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGG
T ss_pred eEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhH
Confidence 455566 88999999999999999 88999999952 111 0 1223579999999999
Q ss_pred CEEEEEEEEecCC-CceeeEEEEEEc----CCCeeec-CCceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEecccCC
Q psy17146 603 AGRYYCKASVMGF-PEVGAEATVYLK----GRPTIIS-HRTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVGSS 675 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~-~~~s~~~~l~V~----~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~~~ 675 (1011)
+|.|+|.|.|... ......+.|.|. .+|.+.. +....+..|+.++|.|.+.|.++ +..+.|++||..+..+..
T Consensus 80 ~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~ 159 (211)
T 3tv3_L 80 EAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVE 159 (211)
T ss_dssp CEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred CEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcc
Confidence 9999999999422 246667788887 6777763 33444558999999999999643 238999999999863111
Q ss_pred CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 676 DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
...............+.|.|..+..+|.|.|+|.|.|..|...+++.
T Consensus 160 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~ 206 (211)
T 3tv3_L 160 TTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 206 (211)
T ss_dssp ECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred cCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence 10011111000112368999999999999999999999987766654
No 227
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.76 E-value=2.8e-18 Score=176.09 Aligned_cols=188 Identities=20% Similarity=0.334 Sum_probs=130.3
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCC--eecC------CcccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD--FALG------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~--~~l~------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
.+...| .+.+.+|++|+|.|.+. +.+.+.|+|+. ..+. ........+|+.+.. ..+.++|+|.+++.+
T Consensus 3 ~v~~~~-~~~v~~G~~v~L~C~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~ 78 (211)
T 3tv3_L 3 ALTQPP-SASGSPGQSITISCTGT-SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK--SGNTASLTVSGLQTD 78 (211)
T ss_dssp CCBCCS-EEEECTTCEEEEEEECC-CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEEESCCGG
T ss_pred eEEeCc-eEEEcCCCCEEEEEEEC-CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc--cCCEEEEEECCCChh
Confidence 455556 89999999999999999 88899999953 2110 000111235777654 346779999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-CCCeeec-CCeeeecCCCcEEEEEEccCCCC-CcEEEEEeCCceeee
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPP-DPPRIVQ-GDTLYTTEDREIELECISANGKP-PAEITWIDGTGTVMS 177 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P-~~~i~W~k~~~~l~~ 177 (1011)
|+|.|+|.+.+.... ...+..+.|.|...+ .+|.+.. +....+.+|+.+.|.|.+.+..| .+.+.|+|++..+..
T Consensus 79 D~G~Y~C~~~~~~~~--~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~ 156 (211)
T 3tv3_L 79 DEAVYYCGSLVGNWD--VIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA 156 (211)
T ss_dssp GCEEEEEEEEETTTE--EEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred HCEEEEEEEecCCCc--eeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCC
Confidence 999999999985321 134555778887433 3444432 22333447999999999543333 689999999988765
Q ss_pred ceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 178 NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+.............+...+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~ 201 (211)
T 3tv3_L 157 GVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV 201 (211)
T ss_dssp TEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEE
T ss_pred CcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCE
Confidence 333222222333455666789999999999999999999987543
No 228
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.76 E-value=1.4e-17 Score=175.64 Aligned_cols=176 Identities=17% Similarity=0.227 Sum_probs=121.1
Q ss_pred cCCceEEEcCCCcEEEEEEEecCCCCe-----EEEEecCCcee---------------------------ecCCCcEEEe
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGNPAPE-----ITWIHEDSDKV---------------------------VGNSPNLTLL 596 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~p~p~-----v~W~k~~~~~~---------------------------~~~~~~L~I~ 596 (1011)
..|..+.+.+|++++|.|.+.+.|.+. +.|+|++.... ...+.+|.|.
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~ 87 (248)
T 3pv7_A 8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP 87 (248)
T ss_dssp STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence 456678899999999999999998876 99999742210 0123459999
Q ss_pred ecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEeccc--
Q psy17146 597 MTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVG-- 673 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~-- 673 (1011)
+++.+|+|.|+|.|.| ..+.....+.|.|..+|.+.......+..|+.++|.|.+.| .|.|+.|+|+++|+.+...
T Consensus 88 ~v~~~D~G~Y~C~~~~-~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~ 166 (248)
T 3pv7_A 88 GIQLEEAGEYRCEVVV-TPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE 166 (248)
T ss_dssp SCCGGGCEEEEEEEEE-TTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEE
T ss_pred CCCHHHCeEEEEEEEe-CCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccc
Confidence 9999999999999999 45677788999999999987554455667888999999999 6877789999999654311
Q ss_pred -CCCC--eEEecC-CcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE--EEEEEEe
Q psy17146 674 -SSDD--YSVLED-PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS--VEIMLKP 725 (1011)
Q Consensus 674 -~~~~--~~~~~~-~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~--~~~~l~V 725 (1011)
.... .....+ .......+.|.|.....+|.|.|+|.|.|..+... ..+.|.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 167 ISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp ECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred cccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 0000 001110 00011246899999999999999999999999754 4555544
No 229
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.76 E-value=3.3e-18 Score=169.62 Aligned_cols=158 Identities=16% Similarity=0.236 Sum_probs=115.0
Q ss_pred CceeEEecCcEEEEEE-Ec--CCCCeeEEeeCCeecCCc----ccCCCCcceEEeecCCCceeEEEEeecccCCCceEEE
Q psy17146 35 QDQTAVVGSRVTLPCR-VI--DKTGVLQWTKDDFALGPH----RNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQC 107 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~-v~--~~~~~v~W~k~~~~l~~~----~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C 107 (1011)
..+.+.+|++|+|.|. .. .+.+.+.|+|++..+... ..+...+|+.+..+ + +|+|.+++.+|+|.|+|
T Consensus 4 ~~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~---g--sL~I~~v~~~D~G~Y~C 78 (176)
T 1hng_A 4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN---G--DLKIKNLTRDDSGTYNV 78 (176)
T ss_dssp EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT---S--CEEESSCCGGGCEEEEE
T ss_pred eEEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCC---C--cEEEcccccccCEEEEE
Confidence 3477899999999994 33 234589999999655311 11223467777432 2 59999999999999999
Q ss_pred EEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeec
Q psy17146 108 QVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASV 187 (1011)
Q Consensus 108 ~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~ 187 (1011)
.+.+..+. ...+..+.|.|..++..|.+. ..+..+.|.|. +.+.|.++|+|+|++..+..+.
T Consensus 79 ~~~n~~g~--~~~~~~~~l~V~~~~~~p~i~-------~~~~~v~L~C~-~~g~p~p~i~W~~~g~~l~~~~-------- 140 (176)
T 1hng_A 79 TVYSTNGT--RILNKALDLRILEMVSKPMIY-------WECSNATLTCE-VLEGTDVELKLYQGKEHLRSLR-------- 140 (176)
T ss_dssp EEEETTCC--EEEEEEEEEEEECCCCCCEEE-------EETTTTEEEEE-CSSCSSCEEEEEETTEEEEEES--------
T ss_pred EEEeCCCC--EEEEEEEEEEEeCCCCCCEEE-------ecCCcEEEEEE-ecCCCCcEEEEEECCEECCCCC--------
Confidence 99986432 123667888898876655543 22456899999 7788999999999887764321
Q ss_pred CCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCcee
Q psy17146 188 DGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYK 224 (1011)
Q Consensus 188 ~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~ 224 (1011)
.+.|..++.+|+|.|+|.|.|..|....
T Consensus 141 ---------~~~i~~~~~~d~G~Y~C~a~N~~g~~~~ 168 (176)
T 1hng_A 141 ---------QKTMSYQWTNLRAPFKCKAVNRVSQESE 168 (176)
T ss_dssp ---------SSEEEEECSCCSSCEEEEEEETTEEEEE
T ss_pred ---------cEEEEEEEccCCeEEEEEEEecCCCcee
Confidence 1344477899999999999999986633
No 230
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.76 E-value=1.3e-17 Score=168.24 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=115.5
Q ss_pred cCCceEEEcCCCcEEEEEEEec-CCCCeEEEEecCCcee------------------------ecCCCcEEEeecCCCCC
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDG-NPAPEITWIHEDSDKV------------------------VGNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g-~p~p~v~W~k~~~~~~------------------------~~~~~~L~I~~v~~~d~ 603 (1011)
..|..+.+.+|++++|.|.+.+ .+.+.|.|+|++..+. ...+++|+|.+++.+|+
T Consensus 3 ~~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~ 82 (193)
T 2if7_A 3 LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDT 82 (193)
T ss_dssp CCCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGC
T ss_pred CCCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccC
Confidence 4567888999999999999976 4567999999864221 12357899999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcCCC---eeecCCceeeecCC-cEEEEEEEEecC-CCCeEEEEECCeEecccCCCCe
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKGRP---TIISHRTQFGIPGD-TARVECSAFSIP-PPEKVTWSYRGEEIGVGSSDDY 678 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~~P---~i~~~~~~~v~~G~-~v~L~C~~~g~p-~p~~v~W~~~g~~l~~~~~~~~ 678 (1011)
|.|+|.|.| ..+.....+.|.|..+| .|.... .....|. .++|.|.+.|.| .| .|+|+++|..+..
T Consensus 83 G~Y~C~~~~-~~~~~~~~~~L~V~~~~~~p~i~~~~-~~~~~g~~~v~L~C~~~g~~p~p-~i~W~~~g~~l~~------ 153 (193)
T 2if7_A 83 GSYRAQIST-KTSAKLSSYTLRILRQLRNIQVTNHS-QLFQNMTCELHLTCSVEDADDNV-SFRWEALGNTLSS------ 153 (193)
T ss_dssp EEEEEEEEC-SSCEEEEEEEEEEECCCEEEEEEECC-C---CSSEEEEEEEEEESCCTTC-EEEEEETTEEEES------
T ss_pred ceEEEEEEe-cCCCeEEEEEEEEEccCCCCeEecCc-eeecCCCceEEEEEEEecCCCce-EEEEEeCCEEcCC------
Confidence 999999998 44555668888887664 333322 2233465 899999999965 67 9999999987642
Q ss_pred EEecCCcCccceeEEEEcCCCCC-CCEEEEEEEEcCCCCeEEEEEE
Q psy17146 679 SVLEDPLKEGIKSTLIIRESRHD-HFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 679 ~~~~~~~~~~~~~~L~I~~~~~~-d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
...|.|.....+ |.|.|+|.|.|.+|..+..+.+
T Consensus 154 -----------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~~ 188 (193)
T 2if7_A 154 -----------QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVSA 188 (193)
T ss_dssp -----------SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEEEH
T ss_pred -----------CCeEEEEeccCcCCCCcEEEEEECCCCcccccccc
Confidence 135666544444 8999999999999988766543
No 231
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.75 E-value=3.9e-18 Score=175.33 Aligned_cols=179 Identities=17% Similarity=0.307 Sum_probs=127.5
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--------------------ee---ecCCCcEEEeecCCC
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------------------KV---VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--------------------~~---~~~~~~L~I~~v~~~ 601 (1011)
|.+...|..+.+.+|++++|.|.+.+.|.+.+.|+|.+.. .. .....+|+|.+++.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE 81 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence 4566668889999999999999999999999999984311 00 112348999999999
Q ss_pred CCEEEEEEEEecCCCceeeEEEEEE---cCCCeeec-CCceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEecccCCC
Q psy17146 602 LAGRYYCKASVMGFPEVGAEATVYL---KGRPTIIS-HRTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIGVGSSD 676 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~~~~s~~~~l~V---~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~~~~~~ 676 (1011)
|+|.|+|.|.|.........+.|.| ..+|.+.. +....+..|+.++|.|.+.|.++ +..++|+|+|..+..+...
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~ 161 (213)
T 3r06_A 82 DIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQ 161 (213)
T ss_dssp GCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEE
T ss_pred cCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEe
Confidence 9999999999843334455567777 66777763 44445667889999999998754 3489999999998632100
Q ss_pred CeEEec-CCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 677 DYSVLE-DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 677 ~~~~~~-~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
...... ........+.|.|.....+|.|.|+|.|+|..........+
T Consensus 162 ~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~~~~~ 209 (213)
T 3r06_A 162 SVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAIVKTL 209 (213)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEE
T ss_pred ccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcceEEec
Confidence 111111 00001124578899999999999999999998665544443
No 232
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.75 E-value=1.5e-17 Score=176.28 Aligned_cols=204 Identities=18% Similarity=0.202 Sum_probs=131.9
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCC---------cccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGP---------HRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~---------~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
+.+...|.++.+.+|++|+|.|.+.+ +.+.+.|+|....... .......+|+.+..+...+.++|+|.++
T Consensus 4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v 83 (256)
T 3tf7_C 4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV 83 (256)
T ss_dssp CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence 56778889999999999999999987 6679999985311100 0111224577776555667889999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc-----------------CCCCCeee-cCCeeeecCCCcEEEEEEccC
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLV-----------------PPDPPRIV-QGDTLYTTEDREIELECISAN 159 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-----------------~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~ 159 (1011)
+.+|+|.|+|.+.+............+.|.|.. ...++.+. .+..+.+.+|+.++|.|. +.
T Consensus 84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~-~~ 162 (256)
T 3tf7_C 84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCR-QT 162 (256)
T ss_dssp CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEE-EC
T ss_pred CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEE-cC
Confidence 999999999999885432223344557788886 22344444 445677889999999999 44
Q ss_pred CCCCcEEEEEeCCceeeeceeEE-------EeeecCCceEE-----EEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEE
Q psy17146 160 GKPPAEITWIDGTGTVMSNVRVT-------EEASVDGRRTT-----VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVAR 227 (1011)
Q Consensus 160 g~P~~~i~W~k~~~~l~~~~~~~-------~~~~~~~~~~~-----~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~ 227 (1011)
+. .+.+.|+|............ .......+... ...+|.|.+++.+|+|.|+|.|.|..|....-.-
T Consensus 163 ~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~g 241 (256)
T 3tf7_C 163 NS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEG 241 (256)
T ss_dssp SC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCC
T ss_pred CC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCC
Confidence 55 66999998431111000000 00000111110 1247999999999999999999998774432233
Q ss_pred EEEEEE
Q psy17146 228 LKLLVK 233 (1011)
Q Consensus 228 v~v~v~ 233 (1011)
.+|.|.
T Consensus 242 t~l~v~ 247 (256)
T 3tf7_C 242 SKLTVL 247 (256)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 344444
No 233
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.75 E-value=2.1e-18 Score=177.29 Aligned_cols=188 Identities=20% Similarity=0.280 Sum_probs=128.0
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCC--eecC----C--cccCCCCcceEEeecCCCceeEEEEeecccC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDD--FALG----P--HRNLSGFDRYAMIGSDEEGDYSLEIYPVMLD 100 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~--~~l~----~--~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~ 100 (1011)
+.. |..+.+.+|++|+|.|.+.+ +.+.+.|+|++ ..+. . .......+|+.+.. ..+.++|+|.+++.+
T Consensus 3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~ 79 (212)
T 1nfd_E 3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--SGTTATLTISGAQPE 79 (212)
T ss_dssp EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGG
T ss_pred eEC-CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe--eCCEEEEEECcCCcc
Confidence 444 88999999999999999876 45689999864 2210 0 00111135777654 235678999999999
Q ss_pred CCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-CCCeeec-CCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCCceeee
Q psy17146 101 DDARYQCQVSTGILGEPAIRSRFATLTVLVPP-DPPRIVQ-GDTLYTTEDREIELECISANGKPP-AEITWIDGTGTVMS 177 (1011)
Q Consensus 101 D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~ 177 (1011)
|+|.|+|.+.+.... .......+.|.|...+ .+|.+.. .+...+.+|+.+.|.|.+.+..|+ +.++|+|++..+..
T Consensus 80 D~G~Y~C~~~n~~~~-~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~ 158 (212)
T 1nfd_E 80 DEAAYYCLSSYGDNN-DLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATIND 158 (212)
T ss_dssp GCSEEEEEEEETTTT-EEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECS
T ss_pred cCEEEEEEEEcccCc-ccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCC
Confidence 999999999973221 1223344677786543 3455543 333344579999999995444465 89999999988765
Q ss_pred ceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 178 NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+............ +...+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 159 ~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (212)
T 1nfd_E 159 GVKTTKPSKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEGETV 202 (212)
T ss_dssp SCBCCCCBCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred CeecCCceecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence 4322111111222 5556789999999999999999999987653
No 234
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.75 E-value=8.8e-18 Score=170.92 Aligned_cols=164 Identities=17% Similarity=0.205 Sum_probs=118.4
Q ss_pred eEEEcCCCcEEEEEEEe----cCCCCeEEEEecCCcee--------------------ecCCCcEEEeecCCCCCEEEEE
Q psy17146 553 SVQVDRGAGVNLLCDVD----GNPAPEITWIHEDSDKV--------------------VGNSPNLTLLMTSDDLAGRYYC 608 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~----g~p~p~v~W~k~~~~~~--------------------~~~~~~L~I~~v~~~d~G~Y~C 608 (1011)
.+.+.+|++++|.|.+. +.|.+.+.|++++..+. ...+.+|+|.+++.+|+|.|+|
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C 82 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC 82 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence 56788999999999995 45678999999876541 2245789999999999999999
Q ss_pred EEEecCCCce----eeEEEEEEcCC---CeeecCCceeeecCCcEEEEEEEE-ecCCCCeEEEEECCeEecccCCCCeEE
Q psy17146 609 KASVMGFPEV----GAEATVYLKGR---PTIISHRTQFGIPGDTARVECSAF-SIPPPEKVTWSYRGEEIGVGSSDDYSV 680 (1011)
Q Consensus 609 ~a~n~~~~~~----s~~~~l~V~~~---P~i~~~~~~~v~~G~~v~L~C~~~-g~p~p~~v~W~~~g~~l~~~~~~~~~~ 680 (1011)
.|.|...... ...+.|.|..+ |.+.. .....|+.++|.|.+. |.|.| .|+|++||..+... ..++..
T Consensus 83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~---~~~~~g~~~~l~C~~~~g~P~p-~i~W~k~g~~l~~~-~~~~~~ 157 (201)
T 1dr9_A 83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISD---FEIPTSNIRRIICSTSGGFPEP-HLSWLENGEELNAI-NTTVSQ 157 (201)
T ss_dssp EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEE---EECSSTTEEEEEEEEEEESSCE-EEEEEESSCEECCS-EEEEEE
T ss_pred EEEcCCCCccccccccEEEEEEcCCCCCCceEe---ccCCCCCeEEEEEecCCccCCC-EEEEEECCEECccc-cceEEe
Confidence 9999422222 46778888776 44432 1124588999999995 99999 99999999988732 112221
Q ss_pred ecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 681 LEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 681 ~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
..+ .+......+..+..+|.|.|+|.|.|..|..++.+.+.
T Consensus 158 ~~~---~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~~ 198 (201)
T 1dr9_A 158 DPE---TELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWN 198 (201)
T ss_dssp CTT---TCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEEC
T ss_pred cCC---CcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEecc
Confidence 111 12222223344556899999999999999998887763
No 235
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.75 E-value=4.1e-18 Score=176.41 Aligned_cols=169 Identities=18% Similarity=0.275 Sum_probs=126.2
Q ss_pred eEEEcCCCcEEEEEEEecCCC-----CeEEEEecCCcee-------------------ec------CCCcEEEeecCCCC
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPA-----PEITWIHEDSDKV-------------------VG------NSPNLTLLMTSDDL 602 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~-----p~v~W~k~~~~~~-------------------~~------~~~~L~I~~v~~~d 602 (1011)
.+.+.+|++++|.|.+.+.+. +.+.|++++.... .. .+.+|.|.+++.+|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D 83 (222)
T 4i0k_A 4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD 83 (222)
T ss_dssp CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence 456789999999999998865 6899999874431 11 15789999999999
Q ss_pred CEEEEEEEEecCCCceeeEEEEEEcCC---CeeecCCceeeecCCcEEEEEEE-EecCCCCeEEEEE-CCeEecccCCCC
Q psy17146 603 AGRYYCKASVMGFPEVGAEATVYLKGR---PTIISHRTQFGIPGDTARVECSA-FSIPPPEKVTWSY-RGEEIGVGSSDD 677 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~~~~s~~~~l~V~~~---P~i~~~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~-~g~~l~~~~~~~ 677 (1011)
+|.|+|.+.|.+ ..+..+.|.|..+ |.+.......+..|+.++|.|.+ .|.|.| .+.|++ ++..+.. ...
T Consensus 84 ~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~-~v~W~~~~~~~~~~--~~~ 158 (222)
T 4i0k_A 84 EGSYTCFVSIQD--FDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEA-EVFWKDGQGVPLTG--NVT 158 (222)
T ss_dssp CSCEEEEEEECC--CCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCC-EEEEECTTSCBCCS--EEE
T ss_pred CEEEEEEEEeCC--CceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCC-eEEEEcCCCccCCC--Ccc
Confidence 999999999843 4455666777654 67766556678899999999999 888999 999999 5555432 111
Q ss_pred eEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 678 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
.... ....+....|.|.++..+|.|.|+|.|.|..|....++.|.|.+.
T Consensus 159 ~~~~--~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 207 (222)
T 4i0k_A 159 TSQM--ANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQ 207 (222)
T ss_dssp EEEE--ECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC-
T ss_pred eeEE--cCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCC
Confidence 1111 112444567899999999999999999999999999999999754
No 236
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.75 E-value=2.3e-17 Score=173.90 Aligned_cols=185 Identities=14% Similarity=0.208 Sum_probs=124.8
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCee--cC--C---------cccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFA--LG--P---------HRNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~--l~--~---------~~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
.|..+.+.+|++|+|.|.+.+. .+.+.|+|+... +. . .......+|+.+..+...+.++|+|.+
T Consensus 8 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 87 (247)
T 2ghw_B 8 QSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNS 87 (247)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred ecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECc
Confidence 4567899999999999999874 468999995321 10 0 001112368888776556788999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC------------CCCeee-cCCeeeecCCCcEEEEEEccCCCCC
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP------------DPPRIV-QGDTLYTTEDREIELECISANGKPP 163 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p------------~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~ 163 (1011)
++.+|+|.|+|.+.+... ....+..+.|+|...+ .++.+. .+..+.+.+|+.+.|.|. +.+.|.
T Consensus 88 v~~~D~G~Y~C~~~n~~~--~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~-~~~~~~ 164 (247)
T 2ghw_B 88 LRAEDTAVYYCARDRSYY--LDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCR-ASQSVR 164 (247)
T ss_dssp CCGGGCEEEEEEEEETTE--EEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEE-ESSCCT
T ss_pred CCHHHCEEEEEeeeccCC--ccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEE-eCCCcc
Confidence 999999999999988511 1223344678887653 233343 345677899999999999 678888
Q ss_pred cEEEEEe--CCceeeecee--EEEeeecCCceE----EEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 164 AEITWID--GTGTVMSNVR--VTEEASVDGRRT----TVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 164 ~~i~W~k--~~~~l~~~~~--~~~~~~~~~~~~----~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+.+.|+| ++..+..-.. .........+.. ....+|.|.+++.+|+|.|+|.|.|...
T Consensus 165 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~ 229 (247)
T 2ghw_B 165 SNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWP 229 (247)
T ss_dssp TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSS
T ss_pred ceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCC
Confidence 8999999 5543311000 000000011111 1135799999999999999999998643
No 237
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.75 E-value=8e-18 Score=175.89 Aligned_cols=171 Identities=19% Similarity=0.172 Sum_probs=131.5
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee--------cCCCcEEEeecCCCCCEEEEEEEEec-
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------GNSPNLTLLMTSDDLAGRYYCKASVM- 613 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--------~~~~~L~I~~v~~~d~G~Y~C~a~n~- 613 (1011)
.+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|++..... ...+.|.|.+++.+|+|.|+|.+.|.
T Consensus 6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 83 (242)
T 1p6f_A 6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE 83 (242)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCC
Confidence 46778777777 8999999999999875 4568999999865431 24568999999999999999999883
Q ss_pred CCCceeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccce
Q psy17146 614 GFPEVGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIK 690 (1011)
Q Consensus 614 ~~~~~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~ 690 (1011)
+....+..+.|.|.+ +|.|.......+.+|++++|.|.+.+. .+ .+.|+|+|..+.. .... ....
T Consensus 84 ~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~-~~-~~~w~k~g~~~~~----~~~~------~~~~ 151 (242)
T 1p6f_A 84 LWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA-TS-MFLLLKEGRSSHV----QRGY------GKVQ 151 (242)
T ss_dssp EECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTS-CS-EEEEEECSSSCEE----EEEE------CSSE
T ss_pred ccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCC-CC-EEEEEECCCccCc----cccC------CCce
Confidence 223456778888864 677775555678999999999998754 35 8999999987652 1111 2235
Q ss_pred eEEEEcCCCCCCCEEEEEEEEcCC---CCeEEEEEEEecC
Q psy17146 691 STLIIRESRHDHFGVYNCSVSNPY---GSDSVEIMLKPQK 727 (1011)
Q Consensus 691 ~~L~I~~~~~~d~G~Y~C~a~N~~---G~~~~~~~l~V~~ 727 (1011)
..|.|.+++.+|+|.|+|.|.|.. ...+..+.|.|.+
T Consensus 152 ~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~ 191 (242)
T 1p6f_A 152 AEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG 191 (242)
T ss_dssp EEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred EEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence 799999999999999999999974 2445667777754
No 238
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.75 E-value=1.9e-17 Score=175.64 Aligned_cols=193 Identities=13% Similarity=0.135 Sum_probs=129.7
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCeecCC-------------cccCCCCcceEEeecCCCce
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALGP-------------HRNLSGFDRYAMIGSDEEGD 89 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~~l~~-------------~~~~~~~~r~~i~~~~~~~~ 89 (1011)
.++.|...+.++.+.+|++|+|.|.+.+ +.+.+.|+|....... .......+|+.+..+...+.
T Consensus 5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 84 (256)
T 3juy_B 5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT 84 (256)
T ss_dssp --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence 3577888899999999999999999987 4568999985311100 00112236888886666778
Q ss_pred eEEEEeecccCCCceEEEEEEeCCC--------CCcceeeeEEEEEEEcCCC-------------CCeeecCCeeeecCC
Q psy17146 90 YSLEIYPVMLDDDARYQCQVSTGIL--------GEPAIRSRFATLTVLVPPD-------------PPRIVQGDTLYTTED 148 (1011)
Q Consensus 90 ~~L~I~~v~~~D~G~Y~C~~~~~~~--------~~~~~~s~~~~l~V~~~p~-------------~~~i~~~~~~~v~eg 148 (1011)
++|+|.+++.+|+|.|.|.+.+... .........+.|+|...+. +..+..+..+.+.+|
T Consensus 85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G 164 (256)
T 3juy_B 85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG 164 (256)
T ss_dssp EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence 8999999999999999999987500 0122344557788877543 234445667889999
Q ss_pred CcEEEEEEccCCCCC-cEEEEEeC--Cceeee---ceeEEEeeecCCceEE----EEEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 149 REIELECISANGKPP-AEITWIDG--TGTVMS---NVRVTEEASVDGRRTT----VKSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 149 ~~v~L~C~~~~g~P~-~~i~W~k~--~~~l~~---~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
+.++|.|. +.+.|. +.+.|+|. +..+.. .... ......++... ...+|+|.+++.+|+|.|+|.|.|.
T Consensus 165 ~~v~L~C~-~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 242 (256)
T 3juy_B 165 ERATFSCR-SSHSIRSRRVAWYQHKPGQAPRLVIHGVSN-RASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGA 242 (256)
T ss_dssp SCEEEEEE-ESSCCTTCCEEEEEECTTSCCEEEEETTTE-ECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCS
T ss_pred CCEEEEEE-ECCCcCCeeEEEEEECCCCCcEEEEEecCc-cCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeC
Confidence 99999999 556665 89999983 222110 0000 00001111111 1357999999999999999999985
Q ss_pred CC
Q psy17146 219 AD 220 (1011)
Q Consensus 219 ~g 220 (1011)
..
T Consensus 243 ~~ 244 (256)
T 3juy_B 243 SS 244 (256)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 239
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.75 E-value=1.3e-17 Score=167.01 Aligned_cols=153 Identities=13% Similarity=0.194 Sum_probs=121.7
Q ss_pred ceEecCCCcEEEEeecCCCCCCceEEEeCCCceee--------------------------ccCCcEEEEeeccCCCeEE
Q psy17146 399 SVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------------------------GNSPNLTLLMTSDDLAGRY 452 (1011)
Q Consensus 399 ~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~--------------------------~~~~~L~I~~v~~~d~G~Y 452 (1011)
.+.+.+|+++.|.|.+.+.|.+.+.|+|++..... .....|.|.+++.+|+|.|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 45788999999999999999999999999853221 1134599999999999999
Q ss_pred EEEEEEcCCcceeeEEEEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCC
Q psy17146 453 YCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGK 532 (1011)
Q Consensus 453 ~C~a~n~~~~~~s~~~~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~ 532 (1011)
+|.+.|..+ .+.+.
T Consensus 84 ~C~~~~~~~-----~~~l~------------------------------------------------------------- 97 (184)
T 2ny1_B 84 ICEVEDQKE-----EVQLL------------------------------------------------------------- 97 (184)
T ss_dssp EEEETTEEE-----EEEEE-------------------------------------------------------------
T ss_pred EEEEEcCCC-----cEEEE-------------------------------------------------------------
Confidence 999985311 22222
Q ss_pred CcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 533 SEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 533 ~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
|.. +.. +....+.+|+.++|.|.+.+.|.+.+.|++++.... ...+.|.|.++..+|+|.|+|.|.|
T Consensus 98 --------V~~---~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n 164 (184)
T 2ny1_B 98 --------VFG---LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-QGGKTLSVSQLELQDSGTWTCTVLQ 164 (184)
T ss_dssp --------EEE---EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE-EESSEEEESSCCGGGCEEEEEEEEE
T ss_pred --------EEE---ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc-cCceEEEEecCCcCCCeEEEEEEEE
Confidence 221 111 233467899999999999999999999999987663 4678999999999999999999999
Q ss_pred cCCCceeeEEEEEEcCCCe
Q psy17146 613 MGFPEVGAEATVYLKGRPT 631 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V~~~P~ 631 (1011)
..+..+..+.|.|.+.|.
T Consensus 165 -~~~~~~~~~~l~V~~~p~ 182 (184)
T 2ny1_B 165 -NQKKVEFKIDIVVLAFQK 182 (184)
T ss_dssp -TTEEEEEEEEEEEECCCC
T ss_pred -CCceEEEEEEEEEEecCC
Confidence 678888999999988764
No 240
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.75 E-value=9e-18 Score=172.60 Aligned_cols=166 Identities=20% Similarity=0.312 Sum_probs=120.3
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC--c------------------ee---ecCCCcEEEeecCCC
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS--D------------------KV---VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~--~------------------~~---~~~~~~L~I~~v~~~ 601 (1011)
|.+...|..+.+.+|++++|.|.+.+.|.+.+.|+|++. . .. .....+|+|.+++.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3nl4_L 2 VVMTQTPASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLECA 81 (213)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred ccEEeCCCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCChH
Confidence 456667888999999999999999999999999999531 1 11 112347999999999
Q ss_pred CCEEEEEEEEecCCC--ceeeEEEEEE---cCCCeeec-CCceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccC
Q psy17146 602 LAGRYYCKASVMGFP--EVGAEATVYL---KGRPTIIS-HRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGS 674 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~~--~~s~~~~l~V---~~~P~i~~-~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~ 674 (1011)
|+|.|+|.|.|.... .....+.|.| ..+|.+.. +....+.+|+.++|.|.+.| .|.| .|+|+|+|..+..+.
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~~-~v~W~k~g~~~~~~~ 160 (213)
T 3nl4_L 82 DAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADLVATGTVTIVCVANKYFPDV-TVTWEVDGTTQTTGI 160 (213)
T ss_dssp GCEEEEEEECCSSTTTCEECCCEEEEEECCCBCCEEEEECCCHHHHTTSEEEEEEEEEEEBSCC-EEEEEETTEECCSSE
T ss_pred HCEEEEEecCCCCceeEEeCCCeEEEEeCCCcCCeEEEeCCchhhccCCcEeEEEEEecccCCc-EEEEEeCCccCCCCe
Confidence 999999999984322 3445566666 45676653 34445667999999999999 8877 999999999886311
Q ss_pred CCCeEEe-cCCcCccceeEEEEcCCCCCCCEEEEEEEE
Q psy17146 675 SDDYSVL-EDPLKEGIKSTLIIRESRHDHFGVYNCSVS 711 (1011)
Q Consensus 675 ~~~~~~~-~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~ 711 (1011)
....... .........+.|.|..+..+|.|.|+|.|.
T Consensus 161 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 161 ENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred ecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 0000000 000001123689999999999999999999
No 241
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.75 E-value=2.5e-17 Score=164.89 Aligned_cols=154 Identities=16% Similarity=0.290 Sum_probs=121.7
Q ss_pred cccccCCcEEEEEEeecCCCc-cEEEEEECCeecCCCc---CccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEE
Q psy17146 313 NRLVEGTDVRLYCKAEANPSH-MKYRWYINDQPVPAAA---SATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT 388 (1011)
Q Consensus 313 ~~v~~g~~v~l~C~~~~~p~~-~~i~W~k~g~~l~~~~---~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~ 388 (1011)
..+.+|+.++|.|.+.+.+.+ ..+.|+|+|..+.... ....|.|. ... |+|.|+|.|.| .....+.|.|.
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~~~~l~i~--~~~-d~G~Y~C~~~n---~~~~~~~l~V~ 81 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD--SDD-QWGEYSCVFLP---EPMGTANIQLH 81 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEEC--GGG-CCEEEEEEEES---TTSCEEEEEEC
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCCcEEEEEe--chh-hCeEEEEEEEC---CcCcEEEEEEe
Confidence 467899999999999987643 3899999999987642 23356555 444 99999999998 34577899999
Q ss_pred ecceEeeCCCceEecCCCcEEEEeecCCCC-CCceEEEe---CCCceee------------ccCCcEEEEeec-cCCCeE
Q psy17146 389 YGPRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIH---EDSDKVV------------GNSPNLTLLMTS-DDLAGR 451 (1011)
Q Consensus 389 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p-~p~v~W~k---~~~~~~~------------~~~~~L~I~~v~-~~d~G~ 451 (1011)
.+|.+...+....+.+|+.+.|.|.+.|.| .+.+.|++ ++..... .....|.|.+++ .+|+|.
T Consensus 82 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~ 161 (184)
T 3b5h_A 82 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ 161 (184)
T ss_dssp CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCce
Confidence 999999888888899999999999999999 79999999 4432221 112379999999 999999
Q ss_pred EEEEEEEcCCcceeeEEEEEEc
Q psy17146 452 YYCKASVMGFPEVGAEATVYLK 473 (1011)
Q Consensus 452 Y~C~a~n~~~~~~s~~~~v~v~ 473 (1011)
|+|.|.|..+. ....+.|.|.
T Consensus 162 Y~C~a~N~~g~-~~~~~~l~V~ 182 (184)
T 3b5h_A 162 YRCNGTSSKGS-DQAIITLRVR 182 (184)
T ss_dssp EEEEEEETTEE-EEEEEEEEEC
T ss_pred EEEEEEeCCCc-ceEEEEEEEe
Confidence 99999996543 4445666664
No 242
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.74 E-value=8.2e-18 Score=173.75 Aligned_cols=187 Identities=19% Similarity=0.235 Sum_probs=125.3
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecCC--c---------ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALGP--H---------RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~~--~---------~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
..|..+.+.+|++|+|.|.+.+. .+.+.|+|++ ..+.. . ......+|+.+..+...+.++|+|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (219)
T 1c1e_H 5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQIN 84 (219)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEEC
T ss_pred eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEEC
Confidence 35778899999999999999863 4689999973 22210 0 0001236888876544567899999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC-CCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCC
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP-PDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGT 172 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~-p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~ 172 (1011)
+++.+|+|.|+|.+.+............+.|+|... +.+|.+. ..+...+.+|+.+.|.|.+.+++|.| .|+|+|++
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g 164 (219)
T 1c1e_H 85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS 164 (219)
T ss_dssp SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence 999999999999999853211112334567888763 3345543 23334567899999999944338998 99999998
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..+...... ..... ..+...+.|.|.... .|.|.|+|.|.|..+..
T Consensus 165 ~~~~~~~~~--~~~~~-~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~ 210 (219)
T 1c1e_H 165 LSSGVHTFP--AVLQS-DLYTLSSSVTVPSSP-RPSETVTCNVAHPASST 210 (219)
T ss_dssp BCTTEEECC--CEESS-SCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTE
T ss_pred cccceEecC--CcccC-CeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCc
Confidence 764221100 01112 334456789995444 46699999999988765
No 243
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.74 E-value=5.1e-17 Score=170.15 Aligned_cols=188 Identities=20% Similarity=0.261 Sum_probs=123.1
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCC--eecC------Cc---ccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD--FALG------PH---RNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~--~~l~------~~---~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+...|.++.+.+|++|+|.|....+.+.+.|+|+. ..+. .. ......+|+.+.. ...+.++|+|.+++
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v~ 81 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR-PSQENFSLILELAT 81 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC-CSSSBCEEEESSCC
T ss_pred ceECccceEEeCCCEEEEEeecCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc-cCCceEEEEEecCC
Confidence 56678999999999999999954477899999962 1110 00 0011235777765 33456789999999
Q ss_pred cCCCceEEEEEEeCCCC-CcceeeeEEEEEEEcCCCC----------CeeecCCeeeecCCCcEEEEEEccCCCCCcEEE
Q psy17146 99 LDDDARYQCQVSTGILG-EPAIRSRFATLTVLVPPDP----------PRIVQGDTLYTTEDREIELECISANGKPPAEIT 167 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~-~~~~~s~~~~l~V~~~p~~----------~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~ 167 (1011)
.+|+|.|+|.+.+.... ........+.|.|...+.. .....+..+.+.+|+.+.|.|. +.+.|.+.+.
T Consensus 82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~-~~~~p~~~i~ 160 (238)
T 2p1y_A 82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCS-YENSAFDYFP 160 (238)
T ss_dssp GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEE-CCCTTCCEEE
T ss_pred cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEE-EecCCCCcEE
Confidence 99999999999875321 0112234467888765430 1223355777899999999999 7788999999
Q ss_pred EEeCCc--ee--eeceeEEEeeecCCceEEE------EEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 168 WIDGTG--TV--MSNVRVTEEASVDGRRTTV------KSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 168 W~k~~~--~l--~~~~~~~~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
|+|++. .+ ............+++.... ..+|.|.+++.+|+|.|+|.|.|..
T Consensus 161 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 161 WYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 999642 11 0000000000111222111 3689999999999999999999974
No 244
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.74 E-value=1.9e-17 Score=175.70 Aligned_cols=186 Identities=13% Similarity=0.137 Sum_probs=124.4
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecCC--c--------ccCCCCcceEEeecCCCceeEEEEee
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALGP--H--------RNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~~--~--------~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
..|..+.+.+|++|+|.|.+.+. .+.+.|+|++ ..+.. . ......+|+.+..+...+.++|+|.+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 84 (257)
T 1f3r_B 5 LESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNS 84 (257)
T ss_dssp EEECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEES
T ss_pred ECCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECC
Confidence 34567789999999999999873 5789999963 21100 0 00112368888766556788999999
Q ss_pred cccCCCceEEEEEEeCCCC-----CcceeeeEEEEEEEcCCC------------CCeee-cCCeeeecCCCcEEEEEEcc
Q psy17146 97 VMLDDDARYQCQVSTGILG-----EPAIRSRFATLTVLVPPD------------PPRIV-QGDTLYTTEDREIELECISA 158 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~-----~~~~~s~~~~l~V~~~p~------------~~~i~-~~~~~~v~eg~~v~L~C~~~ 158 (1011)
++.+|+|.|+|.+.+..+. .....+..+.|+|...+. ++.+. .+..+.+.+|+.++|.|. +
T Consensus 85 v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~-~ 163 (257)
T 1f3r_B 85 LQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCK-G 163 (257)
T ss_dssp CCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEE-C
T ss_pred CCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEE-E
Confidence 9999999999999885310 011223446788876541 22233 344677899999999999 7
Q ss_pred CCCCCcEEEEEe--CCceeee---ceeEEEeeecCCceE----EEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 159 NGKPPAEITWID--GTGTVMS---NVRVTEEASVDGRRT----TVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 159 ~g~P~~~i~W~k--~~~~l~~---~~~~~~~~~~~~~~~----~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
.+.|.+.+.|+| ++..+.. .... .......+.. ....+|+|.+++.+|+|.|+|.|.|..
T Consensus 164 ~~~~~~~v~W~k~~~g~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 232 (257)
T 1f3r_B 164 SQNINNYLAWYQQKLGEAPKLLIYNTNS-LQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG 232 (257)
T ss_dssp SSCCBTCEEEEEECTTSCCEEEEETTTE-ECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred CCcCCCcEEEEEECCCCCcEEEEEEccC-CCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence 788888999999 5543311 0000 0000011111 113589999999999999999999864
No 245
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.74 E-value=3e-17 Score=165.60 Aligned_cols=164 Identities=20% Similarity=0.309 Sum_probs=116.0
Q ss_pred ecCCceeEEecCcEEEEEEEcC--CCCeeEEeeCCeecCCccc---------C---CCCcceEEeecCCCceeEEEEeec
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVID--KTGVLQWTKDDFALGPHRN---------L---SGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~--~~~~v~W~k~~~~l~~~~~---------~---~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
..|..+.+.+|++|+|.|.+.+ +.+.+.|+|++..+..... . ...+|+.+. .+++|+|.++
T Consensus 3 ~~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I~~v 77 (193)
T 2if7_A 3 LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT-----QSYSLQLSNL 77 (193)
T ss_dssp CCCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC-----TTCCEEECSC
T ss_pred CCCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC-----CCeEEEECCC
Confidence 4577899999999999999975 3358999999765421100 0 011466664 2458999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCC-cEEEEEEccCCCCCcEEEEEeCCceee
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR-EIELECISANGKPPAEITWIDGTGTVM 176 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~-~v~L~C~~~~g~P~~~i~W~k~~~~l~ 176 (1011)
+.+|+|.|+|.+.+... .....+.|.|..++..|.+..... ....|. .+.|.|.+.++.|.++++|+|++..+.
T Consensus 78 ~~~D~G~Y~C~~~~~~~----~~~~~~~L~V~~~~~~p~i~~~~~-~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~ 152 (193)
T 2if7_A 78 KMEDTGSYRAQISTKTS----AKLSSYTLRILRQLRNIQVTNHSQ-LFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS 152 (193)
T ss_dssp CGGGCEEEEEEEECSSC----EEEEEEEEEEECCCEEEEEEECCC----CSSEEEEEEEEEESCCTTCEEEEEETTEEEE
T ss_pred CcccCceEEEEEEecCC----CeEEEEEEEEEccCCCCeEecCce-eecCCCceEEEEEEEecCCCceEEEEEeCCEEcC
Confidence 99999999999988542 234578899988776666654432 233455 899999954445689999999876542
Q ss_pred eceeEEEeeecCCceEEEEEEEEEeeccCc-CCcEEEEEEEeCCCCc
Q psy17146 177 SNVRVTEEASVDGRRTTVKSTLVLTPKKEH-HNTTFTCQAQNTADRT 222 (1011)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~-d~G~Y~C~a~n~~g~~ 222 (1011)
. . ..|.|.....+ |.|.|+|.|.|..|..
T Consensus 153 ~----------~-------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~ 182 (193)
T 2if7_A 153 S----------Q-------PNLTVSWDPRISSEQDYTCIAENAVSNL 182 (193)
T ss_dssp S----------S-------SEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred C----------C-------CeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence 2 1 24666554554 8999999999998865
No 246
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.73 E-value=1.3e-17 Score=178.21 Aligned_cols=175 Identities=18% Similarity=0.276 Sum_probs=124.9
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEe---cCCCCeEEEEecCCce------------------------ee-----cCCCc
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVD---GNPAPEITWIHEDSDK------------------------VV-----GNSPN 592 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~---g~p~p~v~W~k~~~~~------------------------~~-----~~~~~ 592 (1011)
+.+...+..+.+.+|++++|.|.+. +.+.+.+.|+|++... .. ..+++
T Consensus 6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 85 (268)
T 3mj6_A 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS 85 (268)
T ss_dssp ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence 4566777889999999999999998 7788899999976421 00 12378
Q ss_pred EEEeecCCCCCEEEEEEEEec-CCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEE---EecCCCCeEEEEEC-C
Q psy17146 593 LTLLMTSDDLAGRYYCKASVM-GFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSA---FSIPPPEKVTWSYR-G 667 (1011)
Q Consensus 593 L~I~~v~~~d~G~Y~C~a~n~-~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~---~g~p~p~~v~W~~~-g 667 (1011)
|.|.+++.+|+|.|+|.|.|. +....+..+.|.|.. ..+....+.+|+.++|.|.+ .+.|.| .++|+++ +
T Consensus 86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~----~~p~~~~v~~G~~v~L~C~~~~~~~~p~~-~v~W~~~~~ 160 (268)
T 3mj6_A 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP----EEPRDLRVRVGDTTQMRCSIQSTEEKRVT-KVNWMFSSG 160 (268)
T ss_dssp EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC----CCCSEEEEETTCCEEECCBCEESSSSCCC-EEEEEEECT
T ss_pred EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec----cCCCccccccCCcEEEEEEecCCCCCCcc-ceEEEecCC
Confidence 999999999999999999984 223345566666641 13346678999999999999 566888 9999994 3
Q ss_pred eEecc---------------cCC----CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 668 EEIGV---------------GSS----DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 668 ~~l~~---------------~~~----~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
..+.. ... .++.+..+ .....+.|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 236 (268)
T 3mj6_A 161 SHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGD--ISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236 (268)
T ss_dssp TCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSC--GGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCcceeEEEecCCCCccccccccccccceEeecc--CCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEE
Confidence 21110 001 12222111 01235799999999999999999999999999999999884
No 247
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.73 E-value=5.1e-17 Score=168.20 Aligned_cols=188 Identities=14% Similarity=0.209 Sum_probs=128.4
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecC--Cc---------ccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALG--PH---------RNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~--~~---------~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
.|..+.+.+|++|+|.|.+.+. ...+.|+|+.. .+. .. ......+|+.+..+...+.++|+|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (223)
T 1dee_B 6 ESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNS 85 (223)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred cCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECC
Confidence 4578899999999999999874 36899998642 110 00 00112368888776556788999999
Q ss_pred cccCCCceEEEEEEeCCCC--CcceeeeEEEEEEEc-CCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEe-
Q psy17146 97 VMLDDDARYQCQVSTGILG--EPAIRSRFATLTVLV-PPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWID- 170 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~--~~~~~s~~~~l~V~~-~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k- 170 (1011)
++.+|+|.|+|.+.+.... ........+.|+|.. .+.+|.+.. .+...+.+|+.+.|.|.+.+..|.+ .++|+|
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 165 (223)
T 1dee_B 86 LRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYK 165 (223)
T ss_dssp CCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred CCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEcc
Confidence 9999999999999875310 011223346788874 344555542 2222356899999999955555877 999999
Q ss_pred CCceeeeceeEEEeeecCCceEEEEEEEEEeeccC--cCCcEEEEEEEeCCCCc
Q psy17146 171 GTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE--HHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~--~d~G~Y~C~a~n~~g~~ 222 (1011)
++..+.. .........+ ..+...+.|.|..... +|.|.|+|.|.|..+..
T Consensus 166 ~g~~l~~-~~~~~~~~~~-~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~ 217 (223)
T 1dee_B 166 NNSDISS-TRGFPSVLRG-GKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNK 217 (223)
T ss_dssp TSCBCSC-EEECCCEEET-TEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCE
T ss_pred CCCccce-eEECCccccC-CeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCC
Confidence 7776644 1110011112 3555667899988876 88999999999998865
No 248
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.73 E-value=2.2e-17 Score=174.23 Aligned_cols=193 Identities=19% Similarity=0.204 Sum_probs=123.4
Q ss_pred ecCCceeEEecCcEEEEEEEcC-CCC-----eeEEeeCCeecCCcc-----------cCCCCcceEEeecCCCceeEEEE
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVID-KTG-----VLQWTKDDFALGPHR-----------NLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~-~~~-----~v~W~k~~~~l~~~~-----------~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
..|..+.+.+|++|+|.|.+.+ +.+ .+.|+|++....... .+....++.. .....+.++|.|
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sL~I 86 (248)
T 3pv7_A 8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSP-WRLKSGDASLRL 86 (248)
T ss_dssp STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCH-HHHTTTBCCEEE
T ss_pred eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEe-ccCCCCcEEEEe
Confidence 4567789999999999999975 333 499999753321100 0011111110 011235668999
Q ss_pred eecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCc
Q psy17146 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPA-EITWIDGTG 173 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~ 173 (1011)
.+++.+|+|.|+|.+.+.. ...+..+.|.|..+|. +...+...+.+|+.+.|.|.+.+++|.+ .++|+|+++
T Consensus 87 ~~v~~~D~G~Y~C~~~~~~----~~~~~~~~L~V~~~P~---v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~ 159 (248)
T 3pv7_A 87 PGIQLEEAGEYRCEVVVTP----LKAQGTVQLEVVASPA---SRLLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQ 159 (248)
T ss_dssp SSCCGGGCEEEEEEEEETT----EEEEEEEEEEEEBCCE---EEEECC--------CEEEEEEEEEBSSCCEEEEEEECS
T ss_pred CCCCHHHCeEEEEEEEeCC----ccceeEEEEEEecCCc---eEEecCCccccCCCcEEEEEEccEECCCeEEEEEECCc
Confidence 9999999999999998853 3456678888887553 3222223345678888999955448998 999999987
Q ss_pred eeeec------eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE
Q psy17146 174 TVMSN------VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232 (1011)
Q Consensus 174 ~l~~~------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v 232 (1011)
.+... .............+...+.|.|.....+|.|.|+|.|.|..+....+..+.|.|
T Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 160 KFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp SSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred cCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 55322 111111222334556678899999999999999999999998876777888877
No 249
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.73 E-value=4.7e-17 Score=171.52 Aligned_cols=169 Identities=20% Similarity=0.313 Sum_probs=122.8
Q ss_pred ceEEEcCCCcEEEEEEEecCC--CCeEEEEecCCc-------------------------eee-----cCCCcEEEeecC
Q psy17146 552 YSVQVDRGAGVNLLCDVDGNP--APEITWIHEDSD-------------------------KVV-----GNSPNLTLLMTS 599 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~~-------------------------~~~-----~~~~~L~I~~v~ 599 (1011)
..+.+.+|++++|.|.+.+.| .+.+.|+|++.. ... ....+|+|.+++
T Consensus 10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 89 (247)
T 2ghw_B 10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR 89 (247)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence 457899999999999999987 678999985311 111 112479999999
Q ss_pred CCCCEEEEEEEEec-CCCceeeEEEEEEcCC---------------Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEE
Q psy17146 600 DDLAGRYYCKASVM-GFPEVGAEATVYLKGR---------------PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVT 662 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~-~~~~~s~~~~l~V~~~---------------P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~ 662 (1011)
.+|+|.|+|.|.|. ........+.|.|..+ |.+. .+....+.+|++++|.|.+.+.|.+ .+.
T Consensus 90 ~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~-~v~ 168 (247)
T 2ghw_B 90 AEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRS-NLA 168 (247)
T ss_dssp GGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTT-CEE
T ss_pred HHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccc-eEE
Confidence 99999999999994 1222344567888754 3344 3456678999999999999999998 999
Q ss_pred EEE--CCeEec----------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEEEe
Q psy17146 663 WSY--RGEEIG----------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLKP 725 (1011)
Q Consensus 663 W~~--~g~~l~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V 725 (1011)
|+| +|..+. .....++.+.. .+...+|+|.+++.+|+|.|+|.|.|..+.. .....|.|
T Consensus 169 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V 240 (247)
T 2ghw_B 169 WYQQKPGQAPRPLIYDASTRATGIPDRFSGSG----SGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEV 240 (247)
T ss_dssp EEEECTTSCCEEEEETTTEECTTCCTTEEEEC----SSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred EEEECCCCCcEEEEEEeccCCCccCCCEEEec----CCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEE
Confidence 999 555431 11234555532 2345789999999999999999999965432 22335555
No 250
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.73 E-value=2.4e-17 Score=174.49 Aligned_cols=202 Identities=16% Similarity=0.182 Sum_probs=131.4
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC-----------CcccCCCCcceEEeecCCCceeEE
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG-----------PHRNLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~-----------~~~~~~~~~r~~i~~~~~~~~~~L 92 (1011)
.+..+|.++.+.+|++|+|.|.+.+. .+.+.|+|.. ..+. ........+|+.+..+...+.++|
T Consensus 3 ~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 82 (253)
T 3uzq_A 3 KLLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYL 82 (253)
T ss_dssp CCEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred eeEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEE
Confidence 35677889999999999999999873 5689999932 1110 000111236888887666778899
Q ss_pred EEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC------------CCCCeee-cCCeeeecCCCcEEEEEEccC
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP------------PDPPRIV-QGDTLYTTEDREIELECISAN 159 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~------------p~~~~i~-~~~~~~v~eg~~v~L~C~~~~ 159 (1011)
+|.+++.+|+|.|+|.+.+... ......+.|.|... ..++.+. .+..+.+.+|+++.|.|. +.
T Consensus 83 ~I~~v~~~DsG~Y~C~~~~~~~---~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~-~~ 158 (253)
T 3uzq_A 83 HLSSLTSGDTAVYYCSRGWEGF---AYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCR-AS 158 (253)
T ss_dssp EECSCCGGGCEEEEEEECSSSC---CEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEE-ES
T ss_pred EeCCCCcccCEEEEEEEeeCCc---cEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEE-ec
Confidence 9999999999999999987432 22344577777752 1123333 445688999999999999 66
Q ss_pred CCCCc----EEEEEeCC--ceee---eceeEEEeeecCCceEE----EEEEEEEeeccCcCCcEEEEEEEeCCCCceeEE
Q psy17146 160 GKPPA----EITWIDGT--GTVM---SNVRVTEEASVDGRRTT----VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVA 226 (1011)
Q Consensus 160 g~P~~----~i~W~k~~--~~l~---~~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~ 226 (1011)
+.|.+ .+.|+|++ ..+. ..... ......++... ...+|+|.+++.+|+|.|+|.|.|..+.. ...
T Consensus 159 ~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~-fg~ 236 (253)
T 3uzq_A 159 ENVDRYGNSFMHWYQQKAGQPPKLLIYRASN-LESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWT-FGG 236 (253)
T ss_dssp SCCEETTEECEEEEEECTTSCCEEEEETTTE-ECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCC-BCC
T ss_pred CccccCCCcEEEEEEECCCCCCEEEEEEccc-cCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcE-ECC
Confidence 77776 89999842 2211 00000 00001112111 12479999999999999999999865433 233
Q ss_pred EEEEEEEeCC
Q psy17146 227 RLKLLVKYAP 236 (1011)
Q Consensus 227 ~v~v~v~~~P 236 (1011)
-..|.|...+
T Consensus 237 gt~l~v~~~~ 246 (253)
T 3uzq_A 237 GTKLEIKRPL 246 (253)
T ss_dssp CEEEEECCC-
T ss_pred CEEEEEcCCC
Confidence 3455555443
No 251
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.73 E-value=2.4e-17 Score=170.58 Aligned_cols=187 Identities=16% Similarity=0.211 Sum_probs=128.6
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCC---------------cccCCCCcceEEeecCCCceeEEEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGP---------------HRNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~---------------~~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
.|..+.+.+|++|+|.|.+.+. .+.+.|+|+...... .......+|+.+..+...+.++|+|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (222)
T 1q9r_B 6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM 85 (222)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred cCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEE
Confidence 4667899999999999999863 568999986421100 0001123688887765567889999
Q ss_pred eecccCCCceEEEEEEeCCCC-CcceeeeEEEEEEEcC-CCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEe
Q psy17146 95 YPVMLDDDARYQCQVSTGILG-EPAIRSRFATLTVLVP-PDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWID 170 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~-~~~~~s~~~~l~V~~~-p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k 170 (1011)
.+++.+|+|.|+|.+.+.... ........+.|+|... +.+|.+. ..+...+.+|+.+.|.|.+.+.+|.+ .++|++
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 165 (222)
T 1q9r_B 86 NTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS 165 (222)
T ss_dssp CSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred CcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEec
Confidence 999999999999999875321 0001223467788753 2345443 23233456899999999954445988 999999
Q ss_pred CCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCce
Q psy17146 171 GTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223 (1011)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~ 223 (1011)
++..+... .... ...++ .+...+.|.|.++..+| |.|+|.|.|..|...
T Consensus 166 ~g~~~~~~-~~~~-~~~~~-~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~ 214 (222)
T 1q9r_B 166 GSLSSGVH-TFPA-VLQSD-LYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 214 (222)
T ss_dssp GTBCTTEE-EEEE-EEETT-EEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred CCeEcceE-eccc-cccCC-cEEEEEEEEECchhcCC-CeEEEEEEccCCCCc
Confidence 98765322 1111 11233 55666789999999999 999999999988653
No 252
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.73 E-value=4e-17 Score=173.10 Aligned_cols=202 Identities=15% Similarity=0.193 Sum_probs=129.1
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecCC-----------cccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALGP-----------HRNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~~-----------~~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.++..+.+.+|++|+|.|.+.+. .+.+.|+|... .+.. .......+|+.+..+...+.++|+|.
T Consensus 7 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 86 (256)
T 3umt_A 7 QQSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELR 86 (256)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred EccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEEC
Confidence 34566889999999999999873 46899998531 1100 00111236888876655677889999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-------------CCCeee-cCCeeeecCCCcEEEEEEccCCC
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP-------------DPPRIV-QGDTLYTTEDREIELECISANGK 161 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-------------~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~ 161 (1011)
+++.+|+|.|+|.+.+............+.|+|...+ .++.+. .+..+.+.+|+.++|.|. +.+.
T Consensus 87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~-~~~~ 165 (256)
T 3umt_A 87 SLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCR-ASQD 165 (256)
T ss_dssp SCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEE-ESSC
T ss_pred CCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEE-EecC
Confidence 9999999999999987522112334455778887531 133443 445688999999999999 6678
Q ss_pred CCcEEEEEeCC--ceee---eceeEEEeeecCCceEE----EEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE
Q psy17146 162 PPAEITWIDGT--GTVM---SNVRVTEEASVDGRRTT----VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232 (1011)
Q Consensus 162 P~~~i~W~k~~--~~l~---~~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v 232 (1011)
|.+.+.|+|+. ..+. ..... ......+|... ...+|+|.+++.+|+|.|+|.|.+.... .......|.|
T Consensus 166 ~~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~-~fg~gt~L~V 243 (256)
T 3umt_A 166 IGSNLNWLQQKPDGTIKRLIYATSS-LDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPP-TFGGGTKLEI 243 (256)
T ss_dssp CTTCEEEEEECTTCCEEEEEETTTE-ECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSC-EECCCEEEEE
T ss_pred CCcEEEEEEECCCCCcEEEEEeccc-cCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCc-EECCCEEEEE
Confidence 88899999842 2211 00000 00001112111 1247999999999999999999986432 2334456666
Q ss_pred EeCC
Q psy17146 233 KYAP 236 (1011)
Q Consensus 233 ~~~P 236 (1011)
...+
T Consensus 244 ~~~~ 247 (256)
T 3umt_A 244 KRAA 247 (256)
T ss_dssp C---
T ss_pred ECCC
Confidence 5444
No 253
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.73 E-value=3.9e-18 Score=182.29 Aligned_cols=195 Identities=20% Similarity=0.240 Sum_probs=133.1
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCC--eecCC------c---ccCCC-CcceEEeecCCCceeEE
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD--FALGP------H---RNLSG-FDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~--~~l~~------~---~~~~~-~~r~~i~~~~~~~~~~L 92 (1011)
...+.+...|..+.+.+|++|+|.|.+..+.+.+.|+|.. ..... . ..... .+|+.+..+ ..+.++|
T Consensus 24 ~~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL 102 (268)
T 3pl6_D 24 GGGAGVSQTPSNKVTEKGKYVELRCDPISGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP-EGSVSTL 102 (268)
T ss_dssp ---SSCBCCCSEEEEETTCCEEEEEBCBTTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT-TSSSEEE
T ss_pred ccCceeEeCCCEEEecCCCCEEEEEEeCCCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec-CCCEEEE
Confidence 3456788889999999999999999998777899999932 21100 0 00001 168887764 4567899
Q ss_pred EEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc---CCCCCeee--cCCeeeecCCCcEEEEEEccCCCCCc-EE
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV---PPDPPRIV--QGDTLYTTEDREIELECISANGKPPA-EI 166 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~---~p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~-~i 166 (1011)
+|.+++.+|+|.|+|.+.+... .......+.|.|.. ...+|.+. .+....+.+|+.+.|.|.+.+..|++ .+
T Consensus 103 ~I~~v~~~D~G~Y~C~~~~~~~--~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v 180 (268)
T 3pl6_D 103 KIQRTERGDSAVYLCATSALGD--TQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 180 (268)
T ss_dssp EECSCCGGGCEEEEEEEESSSS--SCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred EECCCCcccCEEEEEEEecCCC--ceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEE
Confidence 9999999999999999987321 12344556788876 22234332 33344566799999999954445545 89
Q ss_pred EEEeCCceeeeceeEEEe-----eecCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCCCc
Q psy17146 167 TWIDGTGTVMSNVRVTEE-----ASVDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTADRT 222 (1011)
Q Consensus 167 ~W~k~~~~l~~~~~~~~~-----~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g~~ 222 (1011)
+|+|++..+..+...... .......+...+.|.|.....+| +|.|+|.|.|.....
T Consensus 181 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~ 242 (268)
T 3pl6_D 181 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 242 (268)
T ss_dssp EEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred EEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence 999999888654332110 01123355666789999988887 999999999986544
No 254
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.73 E-value=6.3e-17 Score=167.38 Aligned_cols=171 Identities=15% Similarity=0.143 Sum_probs=122.3
Q ss_pred CceEEEcCCCcEEEEEEEecCCCCe---EEEEecCCceee--------------------------------cCCCcEEE
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNPAPE---ITWIHEDSDKVV--------------------------------GNSPNLTL 595 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p~p~---v~W~k~~~~~~~--------------------------------~~~~~L~I 595 (1011)
|.++.+..|++++|.|.+.+.+.+. |.|+|++..... ..+++|+|
T Consensus 8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I 87 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF 87 (225)
T ss_dssp CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence 4457788999999999999988774 899998754321 12367999
Q ss_pred eecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEE-ecCCCCeEEEEECCeEeccc
Q psy17146 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAF-SIPPPEKVTWSYRGEEIGVG 673 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~-g~p~p~~v~W~~~g~~l~~~ 673 (1011)
.+++.+|+|.|+|.|.|...........+.+..+|.+. .+.......++.+.+.|.+. +.|++ .+.|++++..+...
T Consensus 88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~-~~~w~~~~~~~~~~ 166 (225)
T 4fmk_A 88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPA-RITWISSLGGEAKD 166 (225)
T ss_dssp CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCC-EEEEECSSCCEEEE
T ss_pred ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCC-EEEEEECCccccCC
Confidence 99999999999999998545555666677777777665 33445566777888887765 45666 89999987665421
Q ss_pred CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEE--EEEEe
Q psy17146 674 SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVE--IMLKP 725 (1011)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~--~~l~V 725 (1011)
.......+ ......+.|.|.++..+|.|.|+|.|+|..|..... ++|.|
T Consensus 167 --~~~~~~~~-~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V 217 (225)
T 4fmk_A 167 --TQEPGIQA-GTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSV 217 (225)
T ss_dssp --EEEECSST-TCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCB
T ss_pred --cceEEecC-CCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEE
Confidence 11111110 001124689999999999999999999999976554 44444
No 255
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.73 E-value=5.5e-17 Score=170.28 Aligned_cols=197 Identities=13% Similarity=0.137 Sum_probs=132.7
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCe--ecC--Ccc--------cCC-CCcceEEeecCCCceeE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDF--ALG--PHR--------NLS-GFDRYAMIGSDEEGDYS 91 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~--~l~--~~~--------~~~-~~~r~~i~~~~~~~~~~ 91 (1011)
+.+...|..+.+.+|++|+|.|.+.+ +...+.|+|+.. .+. .+. ... ..+|+.+..+...+.++
T Consensus 2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 81 (242)
T 1hxm_B 2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST 81 (242)
T ss_dssp CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEE
Confidence 45677889999999999999999987 356899998642 110 000 001 34788887655557889
Q ss_pred EEEeecccCCCceEEEEEEeCCCCC---cceeeeEEEEEEEcCCC------CCeeecCCeeeecCCCcEEEEEEccCCCC
Q psy17146 92 LEIYPVMLDDDARYQCQVSTGILGE---PAIRSRFATLTVLVPPD------PPRIVQGDTLYTTEDREIELECISANGKP 162 (1011)
Q Consensus 92 L~I~~v~~~D~G~Y~C~~~~~~~~~---~~~~s~~~~l~V~~~p~------~~~i~~~~~~~v~eg~~v~L~C~~~~g~P 162 (1011)
|+|.+++.+|+|.|.|.+.+...+. .......+.|+|...+. .+.+..+....+.+|+.+.|.|.+.+..|
T Consensus 82 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P 161 (242)
T 1hxm_B 82 LTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFP 161 (242)
T ss_dssp EEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESS
T ss_pred EEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEEC
Confidence 9999999999999999998753111 11223457888887432 22333333345668999999999554457
Q ss_pred C-cEEEEEeCCc-eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEE
Q psy17146 163 P-AEITWIDGTG-TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARL 228 (1011)
Q Consensus 163 ~-~~i~W~k~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v 228 (1011)
. +.++|+|++. .+....... ....++ .+...+.|.|.+... | |.|+|.|.|..+....+..+
T Consensus 162 ~~~~v~W~~~~~~~l~~~~~~~-~~~~~~-~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~ 225 (242)
T 1hxm_B 162 DVIKIHWEEKKSNTILGSQEGN-TMKTND-TYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEI 225 (242)
T ss_dssp CCEEEEEEESSSCCCCCCEECC-CEECSS-SEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEE
T ss_pred CCeEEEEEcCCCEeecCccccc-eecCCC-cEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEe
Confidence 5 7999999987 453321111 112233 455667899988765 5 99999999998876444443
No 256
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.73 E-value=2.5e-17 Score=174.55 Aligned_cols=188 Identities=16% Similarity=0.276 Sum_probs=123.5
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCCc-------------ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPH-------------RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~~-------------~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
..|..+.+.+|++|+|.|.+.+. ...+.|+|....-... ......+|+.+..+...+.++|+|.
T Consensus 28 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 107 (256)
T 3sob_H 28 VESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMN 107 (256)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred EecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEEC
Confidence 34456889999999999999752 3479999853211000 0112236888887766788899999
Q ss_pred ecccCCCceEEEEEEeCCC-------CCcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCC-CcE
Q psy17146 96 PVMLDDDARYQCQVSTGIL-------GEPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKP-PAE 165 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~-------~~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P-~~~ 165 (1011)
+++.+|+|.|.|.+.+... .........+.|+|.. ...+|.+. ..+...+.+|+.+.|.|.+....| .+.
T Consensus 108 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~ 187 (256)
T 3sob_H 108 SLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT 187 (256)
T ss_dssp SCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCE
T ss_pred CCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeE
Confidence 9999999999999986420 0112234456788863 33445554 334445678999999999665567 568
Q ss_pred EEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 166 ITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 166 i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+.| ++..+..+.............+...+.|.|.+...+| |.|+|.|.|..+..
T Consensus 188 v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~ 241 (256)
T 3sob_H 188 VSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 241 (256)
T ss_dssp EEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTE
T ss_pred EEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCc
Confidence 999 4444433222111122233456667899999999999 99999999987755
No 257
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.73 E-value=2e-17 Score=170.91 Aligned_cols=171 Identities=15% Similarity=0.264 Sum_probs=120.2
Q ss_pred CCceEEEcCCCcEEEEEEEecCC--CCeEEEEecC--Ccee-----------------------e-----cCCCcEEEee
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNP--APEITWIHED--SDKV-----------------------V-----GNSPNLTLLM 597 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~--~~~~-----------------------~-----~~~~~L~I~~ 597 (1011)
.|..+.+.+|++++|.|.+.+.+ .+.+.|+|++ .... . ....+|+|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (219)
T 1c1e_H 6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN 85 (219)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence 35567899999999999999876 6899999973 2211 0 1235899999
Q ss_pred cCCCCCEEEEEEEEecCC-C--ceeeEEEEEEcCC----Ceee-cCCceeeecCCcEEEEEEEEe-cCCCCeEEEEECCe
Q psy17146 598 TSDDLAGRYYCKASVMGF-P--EVGAEATVYLKGR----PTII-SHRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGE 668 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~~-~--~~s~~~~l~V~~~----P~i~-~~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~ 668 (1011)
++.+|+|.|+|.|.|... + .....+.|.|... |.+. .++...+..|+.++|.|.+.| .|.|..|+|+++|.
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~ 165 (219)
T 1c1e_H 86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 165 (219)
T ss_dssp CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCc
Confidence 999999999999999421 1 2334567777653 6665 333445678999999999999 78877899999998
Q ss_pred EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
.+........ ... ......+.|.|.... .|.|.|+|.|.|..|.......|.
T Consensus 166 ~~~~~~~~~~--~~~-~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~~~i~ 217 (219)
T 1c1e_H 166 SSGVHTFPAV--LQS-DLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVDKKIV 217 (219)
T ss_dssp CTTEEECCCE--ESS-SCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEEEECC
T ss_pred ccceEecCCc--ccC-CeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEEEecC
Confidence 7532111111 110 001124689995544 466999999999999877666654
No 258
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.73 E-value=4e-17 Score=172.83 Aligned_cols=199 Identities=14% Similarity=0.087 Sum_probs=128.3
Q ss_pred eecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecCC--c---------ccCCCCcceEEeecCCCceeEEEE
Q psy17146 31 AMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALGP--H---------RNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 31 ~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~~--~---------~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
...|.++.+.+|++|+|.|.+.+. .+.+.|+|++ ..+.. . ......+|+.+..+...+.++|+|
T Consensus 4 l~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (256)
T 1nqb_A 4 LQQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQL 83 (256)
T ss_dssp EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEE
Confidence 346778999999999999999874 4689999953 22100 0 000123688887665567789999
Q ss_pred eecccCCCceEEEEEEeCCCC-CcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCc-----EEEE
Q psy17146 95 YPVMLDDDARYQCQVSTGILG-EPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPA-----EITW 168 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~-~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~-----~i~W 168 (1011)
.+++.+|+|.|+|.+.+..+. ........+.|+|...+ .....+..+.+.+|+.++|.|. +.+.|.+ .+.|
T Consensus 84 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~--~v~~~p~~~~v~~G~~v~L~C~-~~~~~~~~~~~~~v~W 160 (256)
T 1nqb_A 84 SSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDI--ELTQTPLSLPVSLGDQASISCR-SSQSIVHSNGNTYLEW 160 (256)
T ss_dssp CSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCC--CEEEECSEEEECTTCCEEEEEE-ESSCCBCTTSCBCEEE
T ss_pred CcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccc--cEEecCcEEEEecCCcEEEEeE-ecCcccccccceEEEE
Confidence 999999999999999885321 01122344667776432 2334455778899999999999 6677764 9999
Q ss_pred Ee--CCceeeece--eEEEeeecCCceEE----EEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEEE
Q psy17146 169 ID--GTGTVMSNV--RVTEEASVDGRRTT----VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLVK 233 (1011)
Q Consensus 169 ~k--~~~~l~~~~--~~~~~~~~~~~~~~----~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v~ 233 (1011)
+| ++..+..-. ..........+... ...+|.|.+++.+|+|.|+|.|.+..... ......|.|.
T Consensus 161 ~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~-fg~gt~l~V~ 232 (256)
T 1nqb_A 161 YLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYT-FGGGTKLEIK 232 (256)
T ss_dssp EEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCE-ECCCEEEEEC
T ss_pred EEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceE-ECCCEEEEEE
Confidence 99 555431100 00000000111111 13579999999999999999999854322 2233445554
No 259
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.73 E-value=2e-18 Score=177.41 Aligned_cols=170 Identities=19% Similarity=0.294 Sum_probs=121.0
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC--cee---------------------ecCCCcEEEeecCCCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS--DKV---------------------VGNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~--~~~---------------------~~~~~~L~I~~v~~~d~ 603 (1011)
+.. |..+.+.+|++++|.|.+.+.|.+.+.|+|++. ... .....+|+|.+++.+|+
T Consensus 3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 81 (212)
T 1nfd_E 3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDE 81 (212)
T ss_dssp EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC
T ss_pred eEC-CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccC
Confidence 344 778899999999999999999888999998642 110 01234799999999999
Q ss_pred EEEEEEEEec-CC-CceeeEEEEEE----cCCCeeec-CCceeeecCCcEEEEEEEEec-CC-CCeEEEEECCeEecccC
Q psy17146 604 GRYYCKASVM-GF-PEVGAEATVYL----KGRPTIIS-HRTQFGIPGDTARVECSAFSI-PP-PEKVTWSYRGEEIGVGS 674 (1011)
Q Consensus 604 G~Y~C~a~n~-~~-~~~s~~~~l~V----~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~-p~~v~W~~~g~~l~~~~ 674 (1011)
|.|+|.|.|. .. ........|.| ..+|.+.. +....+.+|+.++|.|.+.|. |. + .|+|+|+|+.+....
T Consensus 82 G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~-~v~W~k~g~~~~~~~ 160 (212)
T 1nfd_E 82 AAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSA-TVTWKANGATINDGV 160 (212)
T ss_dssp SEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCC-EEEEEETTEEECSSC
T ss_pred EEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCcc-EEEEEECCeEcCCCe
Confidence 9999999972 11 11233455666 35677764 334445689999999999998 55 6 999999999987431
Q ss_pred CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEE
Q psy17146 675 SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV 719 (1011)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~ 719 (1011)
.. .....+.......+.|.|.++..+|+|.|+|.|.|..+..+.
T Consensus 161 ~~-~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 204 (212)
T 1nfd_E 161 KT-TKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK 204 (212)
T ss_dssp BC-CCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred ec-CCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence 11 111111000112367999999999999999999999887443
No 260
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.73 E-value=5.7e-17 Score=168.86 Aligned_cols=194 Identities=16% Similarity=0.196 Sum_probs=126.2
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecC--Cc--------ccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALG--PH--------RNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~--~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
+|..+.+.+|++|+|.|.+.+. ...+.|+|... .+. .. ......+|+.+..+...+.++|+|.++
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (232)
T 1dn0_B 6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV 85 (232)
T ss_dssp EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence 4677899999999999999863 46899998642 110 00 000123688887765567889999999
Q ss_pred ccCCCceEEEEEEeCCC--CCcceeeeEEEEEEEc-CCCCCeeec-CCeeeecCC-CcEEEEEEccCCCCCc-EEEEEe-
Q psy17146 98 MLDDDARYQCQVSTGIL--GEPAIRSRFATLTVLV-PPDPPRIVQ-GDTLYTTED-REIELECISANGKPPA-EITWID- 170 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~--~~~~~~s~~~~l~V~~-~p~~~~i~~-~~~~~v~eg-~~v~L~C~~~~g~P~~-~i~W~k- 170 (1011)
+.+|+|.|.|.+.+... .........+.|+|.. ++.+|.+.. .+...+.+| +.+.|.|.+.+.+|.+ .++|++
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~ 165 (232)
T 1dn0_B 86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYK 165 (232)
T ss_dssp CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEET
T ss_pred CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcC
Confidence 99999999999984211 1011223446888876 344555542 122234468 9999999965556876 999999
Q ss_pred CCceeeeceeEEEeeecCCceEEEEEEEEEeeccC--cCCcEEEEEEEeCCCCceeEEEE
Q psy17146 171 GTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKE--HHNTTFTCQAQNTADRTYKVARL 228 (1011)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~--~d~G~Y~C~a~n~~g~~~~s~~v 228 (1011)
++..+.. .........+ ..+...+.|.|.+... +|.|.|+|.|.|..+.......+
T Consensus 166 ~g~~l~~-~~~~~~~~~~-~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i 223 (232)
T 1dn0_B 166 NNSDISS-TRGFPSVLRG-GKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPL 223 (232)
T ss_dssp TSCEECC-EEECCCEEET-TEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEEC
T ss_pred CCCceee-EEECCccccC-CcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEec
Confidence 7776644 1110011112 3555668899998887 89999999999998865433333
No 261
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.73 E-value=1.4e-17 Score=174.26 Aligned_cols=180 Identities=19% Similarity=0.324 Sum_probs=127.1
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--------------------ee---ecCCCcEEEeecCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------------------KV---VGNSPNLTLLMTSD 600 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--------------------~~---~~~~~~L~I~~v~~ 600 (1011)
.+.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|++.. .. .....+|+|.+++.
T Consensus 24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 103 (237)
T 3sob_L 24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 103 (237)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence 34566678889999999999999999999999999995311 11 11345799999999
Q ss_pred CCCEEEEEEEEecCCCceeeEEEEEE---cCCCeeec-CCceeeecCCcEEEEEEEEecCC--CCeEEEEECCeEecccC
Q psy17146 601 DLAGRYYCKASVMGFPEVGAEATVYL---KGRPTIIS-HRTQFGIPGDTARVECSAFSIPP--PEKVTWSYRGEEIGVGS 674 (1011)
Q Consensus 601 ~d~G~Y~C~a~n~~~~~~s~~~~l~V---~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~--p~~v~W~~~g~~l~~~~ 674 (1011)
+|+|.|+|.|.|.........+.|.| ..+|.+.. +....+..|+.++|.|.+.|.++ + .|+|+|+|..+..+.
T Consensus 104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~-~v~W~k~g~~~~~~~ 182 (237)
T 3sob_L 104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREA-KVQWKVDNALQSGNS 182 (237)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCC-EEEEEETTEECCSSE
T ss_pred hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCce-EEEEEECCCCCCCce
Confidence 99999999998843223344456666 45677653 34444556899999999998543 6 999999999886321
Q ss_pred CCCeEEec-CCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 675 SDDYSVLE-DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 675 ~~~~~~~~-~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
........ ........+.|.|.....+|.|.|+|.|+|..........+.
T Consensus 183 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~ 233 (237)
T 3sob_L 183 QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 233 (237)
T ss_dssp EEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEEE
T ss_pred eecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeeee
Confidence 00001110 000011246799999999999999999999987665555443
No 262
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.73 E-value=4.6e-17 Score=174.62 Aligned_cols=168 Identities=17% Similarity=0.341 Sum_probs=122.2
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc----ee----------------e---cCCCcEEEeecCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----KV----------------V---GNSPNLTLLMTSD 600 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~----~~----------------~---~~~~~L~I~~v~~ 600 (1011)
.+.+...|..+.+.+|++++|.|.+.+.|.+.+.|+|++.. .. . ....+|+|.+++.
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 91 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 91 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence 45677778899999999999999999999999999997531 11 0 1123799999999
Q ss_pred CCCEEEEEEEEecCCCceeeEEEEEEcCCCe---------------eecCCceeeecCCcEEEEEEEEecCC--CCeEEE
Q psy17146 601 DLAGRYYCKASVMGFPEVGAEATVYLKGRPT---------------IISHRTQFGIPGDTARVECSAFSIPP--PEKVTW 663 (1011)
Q Consensus 601 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~---------------i~~~~~~~v~~G~~v~L~C~~~g~p~--p~~v~W 663 (1011)
+|+|.|+|.|.|.........+.|.|..+|. +..+....+.+|++++|.|.+.|.|. + .+.|
T Consensus 92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~-~v~W 170 (276)
T 3auv_A 92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDY-WIHW 170 (276)
T ss_dssp GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGS-EEEE
T ss_pred hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCC-EEEE
Confidence 9999999999984222234456777766532 33456778899999999999998873 6 8999
Q ss_pred EECC--eEec---------------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 664 SYRG--EEIG---------------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 664 ~~~g--~~l~---------------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
+|++ ..+. .....++.+..+. ......|.|.+++.+|+|.|+|.|.|..
T Consensus 171 ~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~a~n~~ 236 (276)
T 3auv_A 171 VRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADT--SKNTAYLQMNSLRAEDTAVYYCARFVFF 236 (276)
T ss_dssp EEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEG--GGTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred EEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecC--CCcEEEEEECCCChhHCEEEEEEEEcCc
Confidence 9963 2210 1123566655421 1234689999999999999999999983
No 263
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.73 E-value=7e-17 Score=166.75 Aligned_cols=187 Identities=16% Similarity=0.206 Sum_probs=129.2
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ec---CCc--------ccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--AL---GPH--------RNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l---~~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
.|..+.+.+|++|+|.|.+.+. ...+.|+|+.. .+ ... ......+|+.+..+...+.++|+|.+
T Consensus 6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (220)
T 2fbj_H 6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK 85 (220)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred cCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECC
Confidence 4567899999999999999863 46899998642 11 000 00112368888776556788999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-CCCeeecCCeeeecCCCcEEEEEEccCCCCC--cEEEEEeCCc
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP-DPPRIVQGDTLYTTEDREIELECISANGKPP--AEITWIDGTG 173 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W~k~~~ 173 (1011)
++.+|+|.|.|.+.+.... .......+.|+|...+ .+|.+...+...+.+|+.+.|.|.+.+..|. +.++|+|++.
T Consensus 86 v~~~DsG~Y~C~~~~~~~~-~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~ 164 (220)
T 2fbj_H 86 VRSEDTALYYCARLHYYGY-NAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGK 164 (220)
T ss_dssp CCGGGCEEEEEEEEETTTE-EEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCS
T ss_pred CChhhCEEEEEEEeccccc-cceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEecCCE
Confidence 9999999999999885321 0012334678887643 3455543223446789999999995544586 7999999987
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+... ........+ ..+...+.|.|.+...+|.|.|+|.|.|..+..
T Consensus 165 ~~~~~-~~~~~~~~~-g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~ 211 (220)
T 2fbj_H 165 DITTV-NFPPALASG-GRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV 211 (220)
T ss_dssp SCEEE-ECCCEECSS-SCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred ecceE-ecCceECCC-CCEEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence 75211 111111122 345556789999999999999999999998865
No 264
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.73 E-value=4.5e-17 Score=171.02 Aligned_cols=170 Identities=15% Similarity=0.255 Sum_probs=121.9
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC--c--ee-------------------ecCCCcEEEeecCCCC
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS--D--KV-------------------VGNSPNLTLLMTSDDL 602 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~--~--~~-------------------~~~~~~L~I~~v~~~d 602 (1011)
.+...|..+.+.+|++++|.|.+.+.|.+.+.|+|+.. . .. .....+|+|.+++.+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (242)
T 2znx_A 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED 82 (242)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence 45567788999999999999999999999999999642 1 00 0123479999999999
Q ss_pred CEEEEEEEEecCCCceeeEEEEEEcCCCe--------------eecCCceeeecCCcEEEEEEEEecC--CCCeEEEEEC
Q psy17146 603 AGRYYCKASVMGFPEVGAEATVYLKGRPT--------------IISHRTQFGIPGDTARVECSAFSIP--PPEKVTWSYR 666 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~--------------i~~~~~~~v~~G~~v~L~C~~~g~p--~p~~v~W~~~ 666 (1011)
+|.|+|.|.|.........+.|.|..+|. +..+....+.+|++++|.|.+.|.| .+ .+.|+|+
T Consensus 83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~-~v~W~k~ 161 (242)
T 2znx_A 83 FGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSD-YXSXIRK 161 (242)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGS-CEEEEEE
T ss_pred CEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCc-ceeeEee
Confidence 99999999984222234456788877652 3344455689999999999999987 36 8999995
Q ss_pred --CeEec---c-----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC--CCCeE
Q psy17146 667 --GEEIG---V-----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP--YGSDS 718 (1011)
Q Consensus 667 --g~~l~---~-----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~--~G~~~ 718 (1011)
+..+. . ....++.+..+ ..+...+|.|.+++.+|+|.|+|.|.|. +|..+
T Consensus 162 ~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~fG~gt 229 (242)
T 2znx_A 162 FPGNRLEYMGYVSYSGSTYYNPSLKSRISITRD--TSKNQYYLDLNSVTTEDTATYYCANXDGDYXGQGT 229 (242)
T ss_dssp CTTSCEEEEEEECTTSCEEECGGGTTCEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEETTSSCBCCCE
T ss_pred CCCCCcEEEEEEecCCccccCccccCcEEEEec--CCCCEEEEEECCCCcCcCEEEEEeccCCcccCCCe
Confidence 33221 0 01345655432 1234579999999999999999999994 45543
No 265
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.73 E-value=2.7e-17 Score=171.32 Aligned_cols=179 Identities=22% Similarity=0.302 Sum_probs=129.7
Q ss_pred ecCCceeEEecCcEEEEEEEcCCC--CeeEEeeCCeecCC---c----ccCCCCcceE----------EeecCCCceeEE
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDKT--GVLQWTKDDFALGP---H----RNLSGFDRYA----------MIGSDEEGDYSL 92 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~~--~~v~W~k~~~~l~~---~----~~~~~~~r~~----------i~~~~~~~~~~L 92 (1011)
..|.++.+.+|++++|.|.+.+.. +.+.|+|++..... . ......+|+. +..+ ..|
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-----~~L 79 (231)
T 2pet_A 5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ-----GRL 79 (231)
T ss_dssp CCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT-----CCE
T ss_pred cCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC-----ceE
Confidence 357889999999999999999854 68999987643210 0 0000012333 3322 249
Q ss_pred EEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecC-CeeeecCCCcE-EEEEEccCCCCCcEEEEEe
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQG-DTLYTTEDREI-ELECISANGKPPAEITWID 170 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~-~~~~v~eg~~v-~L~C~~~~g~P~~~i~W~k 170 (1011)
.|.+++.+|+|.|+|.+.+... +..+..+.|.|..+|..+.+... ..+.+.+|+.+ .|.|.+..++|.+.++|+|
T Consensus 80 ~i~~v~~~D~G~Y~C~~~~~~~---~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~ 156 (231)
T 2pet_A 80 VLAEAQVGDERDYVCVVRAGAA---GTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYR 156 (231)
T ss_dssp EESSCCGGGCEEEEEEEECGGG---CEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEE
T ss_pred EEcccCcccCceEEEEEEecCC---CceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEE
Confidence 9999999999999999988642 34677889999999888777654 35567789988 9999944899999999999
Q ss_pred CCceeeece----eEEEe---eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 171 GTGTVMSNV----RVTEE---ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 171 ~~~~l~~~~----~~~~~---~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
++..+.... ++... .......+...+.|.|.....+|.|.|+|.|.|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 157 NGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp TTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred CCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 998876543 22211 1123334555578999877777899999999995
No 266
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.73 E-value=5.2e-17 Score=167.32 Aligned_cols=171 Identities=22% Similarity=0.348 Sum_probs=118.8
Q ss_pred CceEEEcCCCcEEEEEEE-ecCC-CCeEEEEecCC--ce------------------ee---cCCCcEEEeecCCCCCEE
Q psy17146 551 PYSVQVDRGAGVNLLCDV-DGNP-APEITWIHEDS--DK------------------VV---GNSPNLTLLMTSDDLAGR 605 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~-~g~p-~p~v~W~k~~~--~~------------------~~---~~~~~L~I~~v~~~d~G~ 605 (1011)
|..+.+.+|++++|.|.+ .+.+ .+.+.|+|++. .. .. ....+|+|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 86 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence 778899999999999995 4443 57999999642 11 01 123479999999999999
Q ss_pred EEEEEEecCC-CceeeEEEEEEc---CCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeE
Q psy17146 606 YYCKASVMGF-PEVGAEATVYLK---GRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYS 679 (1011)
Q Consensus 606 Y~C~a~n~~~-~~~s~~~~l~V~---~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~ 679 (1011)
|+|.|.|... ......+.|.|. .+|.+.. +.......|+.++|.|.+.|. |.|..|+|+|+|+.+..+......
T Consensus 87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~ 166 (216)
T 2xzc_L 87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVT 166 (216)
T ss_dssp EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEEC
T ss_pred EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecC
Confidence 9999999422 123344567775 4677663 333233469999999999985 554589999999988632000011
Q ss_pred EecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 680 VLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 680 ~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
...+ .++ ..+.|.|..+..+|.|.|+|.|.|..........+
T Consensus 167 ~~~~--~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~i 211 (216)
T 2xzc_L 167 EQDS--KDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF 211 (216)
T ss_dssp CCCT--TTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred cccC--CCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEEec
Confidence 1110 111 24589999999999999999999998765544444
No 267
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.73 E-value=2.2e-17 Score=176.71 Aligned_cols=196 Identities=18% Similarity=0.221 Sum_probs=133.7
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccC--C---------CCc-ceEEeecCCCceeEEE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNL--S---------GFD-RYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~--~---------~~~-r~~i~~~~~~~~~~L~ 93 (1011)
....+...|..+.+.+|++|+|.|.+..+.+.+.|+|..........+ . ..+ |+.+... ..+.++|+
T Consensus 26 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~ 104 (270)
T 3qib_D 26 GGMKVIQTPRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECP-SNSPCSLE 104 (270)
T ss_dssp --CCCEEECSEEEEETTSCEEEEEECCTTCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECC-TTSCEEEE
T ss_pred cceeEEeCCCeEEEcCCCCEEEEEEecCCCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeC-CCcEEEEE
Confidence 346788889999999999999999998877899999843111000000 0 001 7777653 45678999
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC---CCCCeee--cCCeeeecCCCcEEEEEEccCCCCCc-EEE
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP---PDPPRIV--QGDTLYTTEDREIELECISANGKPPA-EIT 167 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~---p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~ 167 (1011)
|.+++.+|+|.|+|.+.+............+.|+|... ..+|.+. .+....+.+|+.+.|.|.+.+..|.+ .++
T Consensus 105 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~ 184 (270)
T 3qib_D 105 IQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS 184 (270)
T ss_dssp ESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred ECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEE
Confidence 99999999999999998643222233445577888862 2234332 23333455699999999955447776 899
Q ss_pred EEeCCceeeeceeEEEe-----eecCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCCCc
Q psy17146 168 WIDGTGTVMSNVRVTEE-----ASVDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTADRT 222 (1011)
Q Consensus 168 W~k~~~~l~~~~~~~~~-----~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g~~ 222 (1011)
|+|++..+..+...... .......+...+.|.|.....+| +|.|+|.|.|.....
T Consensus 185 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~ 245 (270)
T 3qib_D 185 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 245 (270)
T ss_dssp EEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCT
T ss_pred EEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCC
Confidence 99998887654332100 11123355666889999998888 999999999986654
No 268
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.72 E-value=1.1e-16 Score=168.97 Aligned_cols=184 Identities=17% Similarity=0.246 Sum_probs=122.3
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
..+...|..+.+.+|++|+|.|.+.+ +.+.+.|+|+..... ........+|+.+... .+.++|+|.+++
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~v~ 82 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGS--GTDYSLTISNLE 82 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE--TTEEEEEESSCC
T ss_pred eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCC--CCEEEEEEccCC
Confidence 45677889999999999999999997 566999999642110 0111122357765433 466799999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-----------------CCCeeecCCeeeecCCCcEEEEEEccCCC
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP-----------------DPPRIVQGDTLYTTEDREIELECISANGK 161 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-----------------~~~~i~~~~~~~v~eg~~v~L~C~~~~g~ 161 (1011)
.+|+|.|+|.+.+.... .....+.|.|..++ .++.+..++.+.+.+|+.+.|.|. +.+.
T Consensus 83 ~~D~G~Y~C~~~n~~~~---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~-~~~~ 158 (250)
T 3esu_F 83 QEDIGTYFCQQGNTLPW---TFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCK-DSGY 158 (250)
T ss_dssp GGGCEEEEEEECSSSSC---EECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEE-CCST
T ss_pred hhhCEEEEEEEeeCCCc---eECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEE-ecCC
Confidence 99999999999875322 23344567776541 233455566778899999999999 6676
Q ss_pred C--CcEEEEEeC--CceeeeceeE-------EEeeecCCceEEE------EEEEEEeeccCcCCcEEEEEEEe
Q psy17146 162 P--PAEITWIDG--TGTVMSNVRV-------TEEASVDGRRTTV------KSTLVLTPKKEHHNTTFTCQAQN 217 (1011)
Q Consensus 162 P--~~~i~W~k~--~~~l~~~~~~-------~~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C~a~n 217 (1011)
| .+.+.|+|+ +..+..-..+ .......+|.... ..+|.|.+++.+|+|.|+|.|.+
T Consensus 159 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 159 AFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp TGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred cccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 6 789999997 4333111000 0001111222111 23799999999999999999997
No 269
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.72 E-value=5.5e-17 Score=171.79 Aligned_cols=173 Identities=19% Similarity=0.267 Sum_probs=126.4
Q ss_pred CCceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--ce-----------------------ee-----cCCCcEEEee
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--DK-----------------------VV-----GNSPNLTLLM 597 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~~-----------------------~~-----~~~~~L~I~~ 597 (1011)
.|..+.+.+|++++|.|.+.+.| .+.+.|+|++. .. .. ....+|+|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (256)
T 1nqb_A 6 QSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS 85 (256)
T ss_dssp ECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence 45678899999999999999886 67999999531 11 01 1124799999
Q ss_pred cCCCCCEEEEEEEEecCC----CceeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCC----CeEEEEE--C
Q psy17146 598 TSDDLAGRYYCKASVMGF----PEVGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPP----EKVTWSY--R 666 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~~----~~~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p----~~v~W~~--~ 666 (1011)
++.+|+|.|+|.|.|... ......+.|.|..+|.+. .+....+.+|++++|.|.+.+.|.+ ..+.|+| +
T Consensus 86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~ 165 (256)
T 1nqb_A 86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKP 165 (256)
T ss_dssp CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECT
T ss_pred CChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECC
Confidence 999999999999998411 123345788898888776 4566779999999999999998864 3899999 6
Q ss_pred CeEecc----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEEEec
Q psy17146 667 GEEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLKPQ 726 (1011)
Q Consensus 667 g~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~ 726 (1011)
|..+.. ....++.+.. .....+|.|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus 166 g~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 232 (256)
T 1nqb_A 166 GQSPKLLIYKVSNRFSGVPDRFSGSG----SGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK 232 (256)
T ss_dssp TSCEEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CCCcEEEEEEeCCCCCccCCcEEEEc----cCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence 654421 1134555432 2345789999999999999999999964421 223455553
No 270
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.72 E-value=3.7e-17 Score=172.87 Aligned_cols=176 Identities=19% Similarity=0.323 Sum_probs=123.9
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCC-----CCeEEEEecCCc--e------------------ee---cCCCcEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP-----APEITWIHEDSD--K------------------VV---GNSPNLTL 595 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p-----~p~v~W~k~~~~--~------------------~~---~~~~~L~I 595 (1011)
.+.+...|..+.+.+|++++|.|.+.+.+ .+.+.|+|++.. . .. ....+|+|
T Consensus 34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 113 (252)
T 3bkj_L 34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI 113 (252)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence 44566668889999999999999999998 689999997521 0 00 12238999
Q ss_pred eecCCCCCEEEEEEEEecCCCceeeEEEEEEcC---CCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEe
Q psy17146 596 LMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG---RPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEI 670 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~---~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l 670 (1011)
.+++.+|+|.|+|.|.|.........+.|.|.. +|.+.. +....+..|+.++|.|.+.|. |.+..|+|+|+|+.+
T Consensus 114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~ 193 (252)
T 3bkj_L 114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 193 (252)
T ss_dssp SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeec
Confidence 999999999999999984222233345677754 576653 333334579999999999985 444479999999988
Q ss_pred cccCCCCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 671 GVGSSDDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
............ ..++ ..+.|.|.++..+|.|.|+|.|.|.........
T Consensus 194 ~~~~~~~~~~~~--~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~p~~~ 245 (252)
T 3bkj_L 194 QNGVLNSWTDQD--SKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVK 245 (252)
T ss_dssp CSSEEEEECCCC--TTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEE
T ss_pred CCCeeeecCccc--CCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCCCeeE
Confidence 632000000100 0111 246799999999999999999999887654333
No 271
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.72 E-value=4.5e-17 Score=172.81 Aligned_cols=202 Identities=15% Similarity=0.164 Sum_probs=128.7
Q ss_pred eeecCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCe--ecCC----------cccCCCCcceEEeecCCCceeEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDF--ALGP----------HRNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~--~l~~----------~~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
...+|.++.+.+|++|+|.|.+.+ +.+.+.|+|... .... .......+|+.+..+...+.++|+|
T Consensus 11 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 90 (257)
T 3gkz_A 11 QLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQL 90 (257)
T ss_dssp EEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred EEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEE
Confidence 445678889999999999999987 356899999431 1100 0011223688887665567789999
Q ss_pred eecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCC-----------CCCeee-cCCeeeecCCCcEEEEEEccCCCC
Q psy17146 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPP-----------DPPRIV-QGDTLYTTEDREIELECISANGKP 162 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p-----------~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P 162 (1011)
.+++.+|+|.|+|.+.+.........+..+.|.|..++ ..+.+. .+..+.+.+|+.+.|.|. +.+.|
T Consensus 91 ~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~-~~~~~ 169 (257)
T 3gkz_A 91 KSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCS-ASSSV 169 (257)
T ss_dssp CSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEE-ESSCC
T ss_pred CCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEE-EccCc
Confidence 99999999999999988522222334455778887651 233444 345688999999999999 56677
Q ss_pred Cc-EEEEEeC--Cceeee---ceeEEEeeecCCceEE----EEEEEEEeeccCcCCcEEEEEEEeCCCCceeEEEEEEEE
Q psy17146 163 PA-EITWIDG--TGTVMS---NVRVTEEASVDGRRTT----VKSTLVLTPKKEHHNTTFTCQAQNTADRTYKVARLKLLV 232 (1011)
Q Consensus 163 ~~-~i~W~k~--~~~l~~---~~~~~~~~~~~~~~~~----~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~v~v 232 (1011)
.+ .+.|+|+ +..+.. .... ......++... ...+|.|.+++.+|+|.|+|.|.+..... ...-.+|.|
T Consensus 170 ~~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~-fg~gt~l~v 247 (257)
T 3gkz_A 170 SSSHLYWYQQKPGSSPKLWIYSTSN-LASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFT-FGSGTKLEI 247 (257)
T ss_dssp CGGGEEEEEECTTSCCEEEEETTTE-ECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCE-ECCCEEEEE
T ss_pred cceEEEEEEECCCCCcEEEEEEccc-cCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceE-EcCCEEEEE
Confidence 76 9999984 222211 0000 00000112111 12479999999999999999998754322 222334555
Q ss_pred Ee
Q psy17146 233 KY 234 (1011)
Q Consensus 233 ~~ 234 (1011)
..
T Consensus 248 ~~ 249 (257)
T 3gkz_A 248 KR 249 (257)
T ss_dssp CC
T ss_pred Ee
Confidence 43
No 272
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.72 E-value=3.1e-17 Score=172.76 Aligned_cols=192 Identities=19% Similarity=0.240 Sum_probs=131.3
Q ss_pred ceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecC----------C---cccCCCCcceEEeecCCCceeEEEE
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALG----------P---HRNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~----------~---~~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
.+...|..+.+.+|++|+|.|.+.+ +.+.+.|+|....-. . ...-...+|+.+..+. .+.++|+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I 81 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS-LTLSTLTV 81 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEE-TTEEEEEE
T ss_pred ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecC-CCEEEEEE
Confidence 4677889999999999999999987 566899999321100 0 0001112688777542 46789999
Q ss_pred eecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc---CCCCCeee--cCCeeeecCCCcEEEEEEccCCCCC-c-EEE
Q psy17146 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV---PPDPPRIV--QGDTLYTTEDREIELECISANGKPP-A-EIT 167 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~---~p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~-~-~i~ 167 (1011)
.+++.+|+|.|+|.+.+............+.|.|.. ...+|.+. .+....+.+|+.+.|.|. +.+.|+ + .++
T Consensus 82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~-~~g~~p~~~~v~ 160 (246)
T 4dzb_B 82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCL-ATGFYPDHVELS 160 (246)
T ss_dssp CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEE-EEEEBSSCEEEE
T ss_pred CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEE-EccCcCCceEEE
Confidence 999999999999999864321122344557788885 22344432 333445667999999999 445444 3 899
Q ss_pred EEeCCceeeeceeEEEeee-----cCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCCCc
Q psy17146 168 WIDGTGTVMSNVRVTEEAS-----VDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTADRT 222 (1011)
Q Consensus 168 W~k~~~~l~~~~~~~~~~~-----~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g~~ 222 (1011)
|+|++..+..+........ .....+...+.|.|.....+| +|.|+|.|.|.....
T Consensus 161 W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~ 221 (246)
T 4dzb_B 161 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 221 (246)
T ss_dssp EEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred EEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCC
Confidence 9999888765443321110 023355666789999998888 999999999986654
No 273
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.72 E-value=7.1e-17 Score=173.18 Aligned_cols=187 Identities=19% Similarity=0.258 Sum_probs=123.4
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCc--------ccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPH--------RNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.+.|...|.++.+.+|++|+|.|.+.+ +.+.+.|+|++...... ......+|+.+.. ..+.++|+|.++
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v 89 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTISSL 89 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSC
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec--cCCeEEEEEccC
Confidence 366888899999999999999999987 46789999975311000 0011235777654 345679999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC------------CCeeecCCeeeecCCCcEEEEEEccCCCC--C
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD------------PPRIVQGDTLYTTEDREIELECISANGKP--P 163 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~------------~~~i~~~~~~~v~eg~~v~L~C~~~~g~P--~ 163 (1011)
+.+|+|.|+|.+.+.... ..+..+.|+|...+. ...+..+..+.+.+|+.+.|.|. +.+.| .
T Consensus 90 ~~~DsG~Y~C~~~n~~~~---~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~-~~g~~~~~ 165 (276)
T 3auv_A 90 QPEDFATYYCQQHYTTPP---TFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCA-ASGFTISD 165 (276)
T ss_dssp CGGGCEEEEEEECSSSSC---CCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEE-EESSCGGG
T ss_pred ChhhCEEEEEEEecCCcc---cccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEE-ecCccCCC
Confidence 999999999999885321 123346777776542 22344445778899999999999 55555 5
Q ss_pred cEEEEEeCC--ceee--e---c--eeEEEeeecCCceEEE------EEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 164 AEITWIDGT--GTVM--S---N--VRVTEEASVDGRRTTV------KSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 164 ~~i~W~k~~--~~l~--~---~--~~~~~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
+.+.|+|++ ..+. . . ..........+|.... ..+|.|.+++.+|+|.|+|.|.|..
T Consensus 166 ~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~ 236 (276)
T 3auv_A 166 YWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFF 236 (276)
T ss_dssp SEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred CEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCc
Confidence 899999964 2110 0 0 0000001112222222 2489999999999999999999973
No 274
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.72 E-value=1e-16 Score=167.78 Aligned_cols=163 Identities=17% Similarity=0.264 Sum_probs=120.0
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC-----------------------ceee----cCCCcEEEeecC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS-----------------------DKVV----GNSPNLTLLMTS 599 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~-----------------------~~~~----~~~~~L~I~~v~ 599 (1011)
+...|.++.+.+|++++|.|. .+.|.+.+.|+|+.. +... ....+|+|.+++
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~ 81 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT 81 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence 455678899999999999999 788999999999621 1111 124579999999
Q ss_pred CCCCEEEEEEEEecCCC-----ceeeEEEEEEcCCC------------eee-cCCceeeecCCcEEEEEEEEecCCCCeE
Q psy17146 600 DDLAGRYYCKASVMGFP-----EVGAEATVYLKGRP------------TII-SHRTQFGIPGDTARVECSAFSIPPPEKV 661 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~~-----~~s~~~~l~V~~~P------------~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v 661 (1011)
.+|+|.|+|.|.|. .+ .......|.|..++ .+. .+....+.+|++++|.|.+.+.|.| .+
T Consensus 82 ~~DsG~Y~C~~~~~-~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~-~i 159 (238)
T 2p1y_A 82 PSQTSVYFCASGDL-GQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFD-YF 159 (238)
T ss_dssp GGGCEEEEEEEEC-------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCC-EE
T ss_pred cccCeeEEEEEEeC-CCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCC-cE
Confidence 99999999999983 22 12234567776543 444 4566779999999999999999998 99
Q ss_pred EEEECCe-----Eecc-------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 662 TWSYRGE-----EIGV-------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 662 ~W~~~g~-----~l~~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
.|+|++. .+.. ....++.+..+ ......+|.|.+++.+|+|.|+|.|.|..
T Consensus 160 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 160 PWYQQFPGEGPALLISILSVSDKKEDGRFTIFFN--KREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEEECTTSCCEEEEEEETTCSEEEETTEEEEEE--TTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEEEECCCCCCEEEEEEccCCCcccCCceEEEec--CCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 9999741 1110 01345554321 12335789999999999999999999984
No 275
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.72 E-value=6.5e-17 Score=170.82 Aligned_cols=165 Identities=14% Similarity=0.249 Sum_probs=122.0
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--------------------ee---ecCCCcEEEeecCCC
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--------------------KV---VGNSPNLTLLMTSDD 601 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--------------------~~---~~~~~~L~I~~v~~~ 601 (1011)
..+...|..+.+.+|++++|.|.+.+.|.+.+.|+|+... .. .....+|+|.+++.+
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 84 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE 84 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence 4566778889999999999999999999999999996421 00 111237999999999
Q ss_pred CCEEEEEEEEecCCCceeeEEEEEEcCC--------------------CeeecCCceeeecCCcEEEEEEEEecC--CCC
Q psy17146 602 LAGRYYCKASVMGFPEVGAEATVYLKGR--------------------PTIISHRTQFGIPGDTARVECSAFSIP--PPE 659 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~--------------------P~i~~~~~~~v~~G~~v~L~C~~~g~p--~p~ 659 (1011)
|+|.|+|.|.|...........|.|..+ +.+..+....+.+|++++|.|.+.+.| .+
T Consensus 85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~- 163 (250)
T 3esu_F 85 DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSS- 163 (250)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGS-
T ss_pred hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCC-
Confidence 9999999999843333445557777653 234456677799999999999999877 67
Q ss_pred eEEEEEC--CeEecc---------------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 660 KVTWSYR--GEEIGV---------------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 660 ~v~W~~~--g~~l~~---------------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
.+.|+|+ +..+.. ....++.+..+. .....+|.|.+++.+|+|.|+|.|.|
T Consensus 164 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 164 WMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADK--SSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp EEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEG--GGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecC--CCCeEEEEECCCCcccCEEEEEEEec
Confidence 8999997 443311 123566655421 13356899999999999999999998
No 276
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.72 E-value=2.9e-17 Score=174.69 Aligned_cols=250 Identities=14% Similarity=0.147 Sum_probs=102.1
Q ss_pred eeCCCceEecCCCcEEEEeecCCCCCCc-eEEEeCCCceee-ccCC---cEEEEeeccCCCeEEEEEEEEcCCcceeeEE
Q psy17146 394 RARPYSVQVDRGAGVNLLCDVDGNPAPE-ITWIHEDSDKVV-GNSP---NLTLLMTSDDLAGRYYCKASVMGFPEVGAEA 468 (1011)
Q Consensus 394 ~~~p~~~~v~~G~~v~l~C~~~g~p~p~-v~W~k~~~~~~~-~~~~---~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~ 468 (1011)
...|.+..|.+|+++.|.|.+.. +.+. +.|.-.-..... ..+. .+.|.+++.+ |.|+|.+... +......+
T Consensus 3 ~v~P~~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~g~~~~~~~l~~v~~~--~~y~C~~~~~-~~~~~~~v 78 (291)
T 1mq8_A 3 SVSPSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPGNNRKVYELSNVQED--SQPMCYSNCP-DGQSTAKT 78 (291)
T ss_dssp EEECSEEEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCCCSCSSEEEEEEESCCSC--CCCEEEEECS-SCEEEEEC
T ss_pred EEeCCccEEcCCCeEEEEEeCCC-CCCccceEEecCCCcccccCCCceEEEEEEecccC--CeEEEEEEcC-CccEEEEE
Confidence 34567789999999999999974 4554 888643221112 2222 3777777743 5699999643 33445555
Q ss_pred EEEEcCCCeeeccCcccccCCCeEEEEeEeeeCCCCCeeEEeeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceee
Q psy17146 469 TVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFR 548 (1011)
Q Consensus 469 ~v~v~~~p~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~ 548 (1011)
.|.|..+|... .
T Consensus 79 ~l~V~~~P~~v--------------------------------------------------------------------~ 90 (291)
T 1mq8_A 79 FLTVYWTPERV--------------------------------------------------------------------E 90 (291)
T ss_dssp EEEECBCCSCC--------------------------------------------------------------------C
T ss_pred EEEEecCCCCC--------------------------------------------------------------------E
Confidence 55554444321 1
Q ss_pred cCCceEEEcCCCcEEEEEEEecCCCC---eEEEEecCCceeecC------CCcEEEeecCCCCCEEEEEEEEecCC--C-
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGNPAP---EITWIHEDSDKVVGN------SPNLTLLMTSDDLAGRYYCKASVMGF--P- 616 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~p~p---~v~W~k~~~~~~~~~------~~~L~I~~v~~~d~G~Y~C~a~n~~~--~- 616 (1011)
..+....+.+|+.++|.|.+.+..+. .|+|+|++..+.... ...|.+.....+|.+.|+|+|.|.-. +
T Consensus 91 I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~ 170 (291)
T 1mq8_A 91 LAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGL 170 (291)
T ss_dssp BCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTS
T ss_pred EecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCC
Confidence 11222336678888888888766443 589999986654222 23677777778888899999998311 1
Q ss_pred ----ceeeEEEEEEcCCCeee--cCCceeeecCCcEEEEEEEEecCCC--CeEEEEECCeEecccCCCCeEEecCCcCcc
Q psy17146 617 ----EVGAEATVYLKGRPTII--SHRTQFGIPGDTARVECSAFSIPPP--EKVTWSYRGEEIGVGSSDDYSVLEDPLKEG 688 (1011)
Q Consensus 617 ----~~s~~~~l~V~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p--~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~ 688 (1011)
..++...|.|..+|... ......+.+|+.++|+|.+.|.|++ ..++|+++|+.+.... .. .+
T Consensus 171 ~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~----~~------~g 240 (291)
T 1mq8_A 171 ELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV----TY------GN 240 (291)
T ss_dssp CEEEECCCCEECBC------------------------------------------------------------------
T ss_pred ccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCcee----ee------cC
Confidence 24666788888875331 1112357899999999999998664 2699999999986310 00 11
Q ss_pred ceeEEEEcCC---CC--CCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 689 IKSTLIIRES---RH--DHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 689 ~~~~L~I~~~---~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
..+.+... .+ ++.+.|+|.|.|...+.++...|+|.+
T Consensus 241 --~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~ 282 (291)
T 1mq8_A 241 --DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282 (291)
T ss_dssp --------------------------------------------
T ss_pred --CeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEc
Confidence 12222222 23 346677788887655566777777765
No 277
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.72 E-value=1.7e-16 Score=161.34 Aligned_cols=178 Identities=17% Similarity=0.178 Sum_probs=120.7
Q ss_pred CceeEEecCcEEEEEEEcC-----CCCeeEEeeCCeecCCcccC------CCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 35 QDQTAVVGSRVTLPCRVID-----KTGVLQWTKDDFALGPHRNL------SGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~-----~~~~v~W~k~~~~l~~~~~~------~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
..+.+.+|++|+|.|.+.. +.+.+.|++++..+.....- ...+|..+. ..+..+|+|.+++.+|+|
T Consensus 2 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~---~~~~~~L~I~~v~~~D~G 78 (201)
T 1dr9_A 2 IHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD---ITNNLSIVILALRPSDEG 78 (201)
T ss_dssp CEEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE---STTTTEEEECSCCGGGCE
T ss_pred ceEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc---cCCCcEEEEecccchhCe
Confidence 3578999999999999964 33589999998765311110 011344431 124568999999999999
Q ss_pred eEEEEEEeCCCCCc-ceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 104 RYQCQVSTGILGEP-AIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~-~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
.|+|.+.+..+... ...+..+.|.|..++..|.+.. ....+|+.+.|.|.+..|+|.|+|+|+|++..+......
T Consensus 79 ~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~---~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~- 154 (201)
T 1dr9_A 79 TYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISD---FEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTT- 154 (201)
T ss_dssp EEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEE---EECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEE-
T ss_pred EEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEe---ccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccce-
Confidence 99999998543211 1124667888887765555532 122468899999995469999999999998877654322
Q ss_pred EeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 183 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.....++..+...+.|.+ ..+|.|.|+|.|.|..+..
T Consensus 155 ~~~~~~~~~~~~~~~~~v---~~~d~g~Y~C~a~n~~~~~ 191 (201)
T 1dr9_A 155 VSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRV 191 (201)
T ss_dssp EEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEETTCCE
T ss_pred EEecCCCcEEEEEEEEEE---EecCCCEEEEEEecCccee
Confidence 222233333343344444 5689999999999998866
No 278
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.72 E-value=5.4e-18 Score=182.23 Aligned_cols=196 Identities=17% Similarity=0.230 Sum_probs=132.3
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCC-------------cccCCCCcceEEeecCCCceeE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGP-------------HRNLSGFDRYAMIGSDEEGDYS 91 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~-------------~~~~~~~~r~~i~~~~~~~~~~ 91 (1011)
..+.+...|..+.+.+|++|+|.|.+.+ +.+.+.|+|++..-.. ...-...+|+.+..+ ..+.++
T Consensus 23 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~s 101 (279)
T 2wbj_D 23 GGAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLST 101 (279)
T ss_dssp CCCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC-SSSEEE
T ss_pred ccceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC-CCCEEE
Confidence 3567888899999999999999999975 4568999997521100 000112468888764 356789
Q ss_pred EEEeecccCCCceEEEEEEeCCCC--CcceeeeEEEEEEEcCC---CCCeee--cCCeeeecCCCcEEEEEEccCCCCC-
Q psy17146 92 LEIYPVMLDDDARYQCQVSTGILG--EPAIRSRFATLTVLVPP---DPPRIV--QGDTLYTTEDREIELECISANGKPP- 163 (1011)
Q Consensus 92 L~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~s~~~~l~V~~~p---~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~- 163 (1011)
|+|.+++.+|+|.|+|.+.+...+ ........+.|+|.... .+|.+. .+....+.+|+.+.|.|.+.+..|+
T Consensus 102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~ 181 (279)
T 2wbj_D 102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH 181 (279)
T ss_dssp EEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSC
T ss_pred EEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCC
Confidence 999999999999999999983210 01122334678887632 344443 2223345579999999995444465
Q ss_pred cEEEEEeCCceeeeceeEEEe-----eecCCceEEEEEEEEEeeccCc-CCcEEEEEEEeCCCCc
Q psy17146 164 AEITWIDGTGTVMSNVRVTEE-----ASVDGRRTTVKSTLVLTPKKEH-HNTTFTCQAQNTADRT 222 (1011)
Q Consensus 164 ~~i~W~k~~~~l~~~~~~~~~-----~~~~~~~~~~~~~L~I~~~~~~-d~G~Y~C~a~n~~g~~ 222 (1011)
++++|+|++..+..+...... .......+...+.|.|.+...+ |.|.|+|.|.|.....
T Consensus 182 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~ 246 (279)
T 2wbj_D 182 VELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 246 (279)
T ss_dssp EEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred cEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence 799999998877654332100 0112335566678999888775 4788999999986654
No 279
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.72 E-value=7.5e-17 Score=169.14 Aligned_cols=193 Identities=18% Similarity=0.239 Sum_probs=133.2
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCC-----------cccCCCCcceEEeecCCCceeEEEEee
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGP-----------HRNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~-----------~~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
..+...|..+.+.+|++|+|.|.+.++.+.+.|+|....-.. .......+|+.+..+ ..+.++|+|.+
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~ 81 (240)
T 3q5y_A 3 SGVVQSPRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF-DDYHSEMNMSA 81 (240)
T ss_dssp CCCEEECSEEEEETTCCEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEEC-TTSCEEEEECS
T ss_pred cccccCcceeeecCCCcEEEEEEeCCCCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeC-CCCEEEEEECc
Confidence 346778899999999999999999888889999993211000 001112258887764 45678999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc---CCCCCeee--cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEe
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV---PPDPPRIV--QGDTLYTTEDREIELECISANGKPPA-EITWID 170 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~---~p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k 170 (1011)
++.+|+|.|+|.+.+... ........+.|+|.. .+.+|.+. .+....+.+|+.+.|.|.+.+..|.+ .++|+|
T Consensus 82 v~~~D~G~Y~C~~~~~~~-~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~ 160 (240)
T 3q5y_A 82 LELEDSAMYFCASSLRWG-DEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV 160 (240)
T ss_dssp CCGGGCEEEEEEEESSTT-BCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CChhHCEEEEEEEccCCC-cceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEE
Confidence 999999999999974211 122344557788874 23344443 23344566799999999955447766 899999
Q ss_pred CCceeeeceeEEE-eeecCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCCCc
Q psy17146 171 GTGTVMSNVRVTE-EASVDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTADRT 222 (1011)
Q Consensus 171 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g~~ 222 (1011)
++..+..+..... ........+...+.|.|.+...+| +|.|+|.|.|.....
T Consensus 161 ~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~ 214 (240)
T 3q5y_A 161 NGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSE 214 (240)
T ss_dssp TTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred CCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence 9988765443211 011223355666789999999988 779999999976544
No 280
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.71 E-value=2e-17 Score=169.62 Aligned_cols=181 Identities=19% Similarity=0.256 Sum_probs=124.8
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC--Ccc--------cCCCCcceEEeecCCCceeEEEEeec
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG--PHR--------NLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~--~~~--------~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.|..+.+.+|++|+|.|.+.+. .+.+.|+|++ .... ... .....+|+.+..+...+.++|+|.++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 85 (210)
T 3d9a_H 6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV 85 (210)
T ss_dssp EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence 4778899999999999999974 3689999863 2110 000 00123688887654456789999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCce
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGTGT 174 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~ 174 (1011)
+.+|+|.|+|.+.+.. .....+.|+|.. .+.+|.+. ..+...+.+|+.+.|.|.+.+..|.+ .++|+|++..
T Consensus 86 ~~~D~G~Y~C~~~~~~-----~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~ 160 (210)
T 3d9a_H 86 TTEDTATYYCANWDGD-----YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS 160 (210)
T ss_dssp CGGGCEEEEEEETTSS-----CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred CcccCEEEEEEEecCc-----ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcc
Confidence 9999999999998742 122336777764 33445543 23234467899999999955445888 9999998875
Q ss_pred eeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 175 VMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+....... ...+ ..+...+.|.|.++..+| |.|+|.|.|..|..
T Consensus 161 ~~~~~~~~--~~~~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~ 204 (210)
T 3d9a_H 161 SGVHTFPA--VLQS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST 204 (210)
T ss_dssp TTEEECCC--EEET-TEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTE
T ss_pred cceEEcCC--ccCC-CcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence 42211100 1112 345556789999998877 99999999998865
No 281
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.71 E-value=4.4e-17 Score=172.83 Aligned_cols=170 Identities=19% Similarity=0.257 Sum_probs=121.1
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecC--Cce----------------------ee-----cCCCcEEEeecC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHED--SDK----------------------VV-----GNSPNLTLLMTS 599 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~--~~~----------------------~~-----~~~~~L~I~~v~ 599 (1011)
|....+.+|++++|.|.+.+.| .+.+.|+|++ ... .. ....+|+|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (257)
T 1f3r_B 7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ 86 (257)
T ss_dssp ECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred CCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence 3456789999999999999986 6899999963 111 01 112489999999
Q ss_pred CCCCEEEEEEEEecCC--------CceeeEEEEEEcCCC---------------eee-cCCceeeecCCcEEEEEEEEec
Q psy17146 600 DDLAGRYYCKASVMGF--------PEVGAEATVYLKGRP---------------TII-SHRTQFGIPGDTARVECSAFSI 655 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~--------~~~s~~~~l~V~~~P---------------~i~-~~~~~~v~~G~~v~L~C~~~g~ 655 (1011)
.+|+|.|+|.|.|... ......+.|.|..+| .+. .+....+.+|++++|.|.+.+.
T Consensus 87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~ 166 (257)
T 1f3r_B 87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN 166 (257)
T ss_dssp TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence 9999999999998411 112345678887653 233 3456678999999999999999
Q ss_pred CCCCeEEEEE--CCeEecc----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 656 PPPEKVTWSY--RGEEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 656 p~p~~v~W~~--~g~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
|.+ .+.|+| +|..+.. ....++.+.. .+...+|+|.++..+|+|.|+|.|.|....-.....|
T Consensus 167 ~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l 241 (257)
T 1f3r_B 167 INN-YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG----SGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKL 241 (257)
T ss_dssp CBT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----EBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEE
T ss_pred CCC-cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEec----CCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEE
Confidence 988 899999 5554311 1134555432 2335689999999999999999999975111223355
Q ss_pred Ee
Q psy17146 724 KP 725 (1011)
Q Consensus 724 ~V 725 (1011)
.|
T Consensus 242 ~V 243 (257)
T 1f3r_B 242 EL 243 (257)
T ss_dssp CC
T ss_pred EE
Confidence 55
No 282
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.71 E-value=6.9e-17 Score=166.04 Aligned_cols=162 Identities=16% Similarity=0.197 Sum_probs=118.3
Q ss_pred cCCceEEEcCCCcEEEEEEEecC-------CCCeEEEEecCCce-----------------------ee-----cCCCcE
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGN-------PAPEITWIHEDSDK-----------------------VV-----GNSPNL 593 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~-------p~p~v~W~k~~~~~-----------------------~~-----~~~~~L 593 (1011)
..|..+.+.+|++++|.|.+.+. +.+.+.|+|++... .. ..+.+|
T Consensus 5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL 84 (214)
T 2zg1_A 5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL 84 (214)
T ss_dssp ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence 45778899999999999999865 57799999986421 11 123479
Q ss_pred EEeecCCCCCEEEEEEEEecCCCc---eeeEEEEEEcC---CCeeecCCceeeecCCcEEEEEEEEec----CCCCeEEE
Q psy17146 594 TLLMTSDDLAGRYYCKASVMGFPE---VGAEATVYLKG---RPTIISHRTQFGIPGDTARVECSAFSI----PPPEKVTW 663 (1011)
Q Consensus 594 ~I~~v~~~d~G~Y~C~a~n~~~~~---~s~~~~l~V~~---~P~i~~~~~~~v~~G~~v~L~C~~~g~----p~p~~v~W 663 (1011)
+|.+++.+|+|.|+|.+.|..... .+..+.|.|.. +|.|..+. .+.+|+.++|.|.+.|. |.| .++|
T Consensus 85 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~p-~v~W 161 (214)
T 2zg1_A 85 SIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE--PLESGRPTRLSCSLPGSCEAGPPL-TFSW 161 (214)
T ss_dssp EECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C--CCCTTCCEEEEEECTTCCSCSSCC-EEEE
T ss_pred EEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc--cccCCCeEEEEEEeccCCCCCCCc-eEEE
Confidence 999999999999999999842111 13567788876 45665433 26789999999999874 778 9999
Q ss_pred EECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC--eEEEEEEEe
Q psy17146 664 SYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS--DSVEIMLKP 725 (1011)
Q Consensus 664 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~--~~~~~~l~V 725 (1011)
++++..+.. .+ ....+.|.|..+..+|.|.|+|.|.|..|. .++.+.|.|
T Consensus 162 ~~~~~~~~~---~~---------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 162 TGNALSPLD---PE---------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp ESSTTSSSC---SS---------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred eCCCCccCC---CC---------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence 999865421 11 122478999999999999999999998764 455555544
No 283
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.71 E-value=3.9e-17 Score=169.56 Aligned_cols=184 Identities=17% Similarity=0.238 Sum_probs=121.7
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecC----Cc---c----cCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALG----PH---R----NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~----~~---~----~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.+|..+.+.+|++|+|.|.+.+. ...+.|+|++. .+. .. . .....+|+.+..+...+.++|+|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (227)
T 1mju_H 5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS 84 (227)
T ss_dssp ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred cCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence 35778899999999999999863 46899999752 110 00 0 001136888876655678899999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCC
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGT 172 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~ 172 (1011)
+++.+|+|.|+|.+.+... ......+.|+|.. .+.+|.+. ..+...+.+|+.+.|.|.+.+..|.+ .++|+|++
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~---~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g 161 (227)
T 1mju_H 85 SLTSDDSAVYYCANKLGWF---PYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGS 161 (227)
T ss_dssp SCCGGGCEEEEEEEEETTE---EEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCCcccCEEEEEEECCCCc---eEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCC
Confidence 9999999999999987521 1223346788876 23344443 22333456899999999955445876 99999988
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..+...... ..... ..+...+.|.|.++..+| |.|+|.|.|..+..
T Consensus 162 ~~~~~~~~~--~~~~~-g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~ 207 (227)
T 1mju_H 162 LSSGVHTFP--AVLQS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASST 207 (227)
T ss_dssp BCTTEEECC--CEEET-TEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTE
T ss_pred CcCCcEECC--ceecC-CeEEEEEEEEEchhhcCC-CeEEEEEEECCCCc
Confidence 764211000 01112 345566789999998888 99999999977654
No 284
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.71 E-value=3.1e-17 Score=173.44 Aligned_cols=187 Identities=16% Similarity=0.184 Sum_probs=126.9
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCC-------------cccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGP-------------HRNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~-------------~~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+|..+.+.+|++|+|.|.+.+. ...+.|+|....... .......+|+.+..+...+.++|+|.+
T Consensus 6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (253)
T 3liz_H 6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS 85 (253)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence 4678899999999999999762 457999985421100 001122368888876666888999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEE-cCCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCc
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVL-VPPDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGTG 173 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~-~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~ 173 (1011)
++.+|+|.|.|.+.+............+.|+|. ..+.+|.+. ..+...+.+|+.+.|.|.+.++.|.+ .+.|+|++.
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~ 165 (253)
T 3liz_H 86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 165 (253)
T ss_dssp CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence 999999999999987521111233445678887 444556654 33444566799999999955557876 999999886
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCce
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~ 223 (1011)
.+...... ..... ..+...+.|.|.+...+| |.|+|.|.|..+...
T Consensus 166 ~~~~~~~~--~~~~~-g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~ 211 (253)
T 3liz_H 166 SSGVHTFP--AVLQS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 211 (253)
T ss_dssp CTTEEECC--CEEET-TEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEE
T ss_pred ecceEeCC--ccccC-CeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcc
Confidence 43211100 01112 355666899999999999 999999999987653
No 285
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.71 E-value=8.5e-18 Score=168.47 Aligned_cols=140 Identities=17% Similarity=0.236 Sum_probs=108.3
Q ss_pred ccccCCcEEEEEEeecCCCccEEEEEECCeecCCCcCccEEEEee-cccccCCcEEEEEEEcCCccceeeEEEEEEe--c
Q psy17146 314 RLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTN-ITRHQHDSIVKCEVHNDVGKSEDSETLDVTY--G 390 (1011)
Q Consensus 314 ~v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~~~~~~L~I~~-~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~~--~ 390 (1011)
...+|+.++|.|.+.+ +. .+.|+|||..+... .+..|.|.+ +..+ |+|.|+|.|.|..|..+....+.|.. +
T Consensus 10 v~~~G~~v~L~C~~~~-~~--~i~W~k~g~~l~~~-~~~~L~I~~~~~~~-D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~ 84 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS-DE--NLKWEKNGQELPQK-HDKHLVLQDFSEVE-DSGYYVCYTPASNKNTYLYLKARVGSADD 84 (186)
T ss_dssp EEEETTEEEEECSSCC-CT--TCEEEETTEEECSC-CCSEEEEESCCTTT-SCEEEEEECSSCCCCCCEEECCCCCSCCC
T ss_pred EEeCCcEEEEEEeCCC-CC--ceEEEECCEECCCC-CCCEEEECCCCccc-cCEEEEEEEEeCCCcEEEEEEEEEecccc
Confidence 3478999999999987 43 49999999999763 566899999 8887 99999999999988865555554433 2
Q ss_pred ceE----------------e--eCC--Cc---eEecCCCcEEEEeecCCCCCCceEEEeCCCcee--eccCCcEEEEeec
Q psy17146 391 PRF----------------R--ARP--YS---VQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--VGNSPNLTLLMTS 445 (1011)
Q Consensus 391 P~~----------------~--~~p--~~---~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~--~~~~~~L~I~~v~ 445 (1011)
|.. . ..+ .. ..+.+|+++.|.|.+ |.|.|+|+|++..+. ......|.|.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~~~~~L~i~~v~ 161 (186)
T 1jbj_A 85 AKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNATKNTWNLGNNA 161 (186)
T ss_dssp CCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSCCSSCCEEEETT
T ss_pred cccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCCCcceEEECCCC
Confidence 210 0 000 01 234499999999999 889999999987654 2356789999999
Q ss_pred cCCCeEEEEEEEEcCC
Q psy17146 446 DDLAGRYYCKASVMGF 461 (1011)
Q Consensus 446 ~~d~G~Y~C~a~n~~~ 461 (1011)
.+|+|.|+|.|.|..+
T Consensus 162 ~~D~G~Y~C~a~N~~g 177 (186)
T 1jbj_A 162 KDPRGTYQCQGAKETS 177 (186)
T ss_dssp SCCEEEEEEEESSCEE
T ss_pred cCcCEEEEEEEEcCcC
Confidence 9999999999998543
No 286
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.71 E-value=4.4e-16 Score=155.93 Aligned_cols=173 Identities=16% Similarity=0.188 Sum_probs=127.8
Q ss_pred ceeecCCc--eeEEecCcEEEEEEEcCCCC--eeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 29 KFAMEPQD--QTAVVGSRVTLPCRVIDKTG--VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 29 ~~~~~p~~--~~v~~G~~v~L~C~v~~~~~--~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.|.++|.+ +.|.+|++++|.|.+..+.+ .|+|++.+..+ .+.... .+...|.|.+++.+|+|.
T Consensus 7 ~~~V~pp~~~v~v~~G~sv~L~C~a~~p~P~~~i~W~~~~~~l---------~~~~~~----~~~~~L~I~~v~~~d~G~ 73 (210)
T 1gsm_A 7 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL---------GAVQSD----TGRSVLTVRNASLSAAGT 73 (210)
T ss_dssp SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTT---------CCEEEE----SSEEEEEECSCCGGGCEE
T ss_pred CEEEeCCCCceEEeCCCCEEEEEECCCCCCCcceEEeeccccc---------CcEEec----CCccEEEECccCcccCce
Confidence 45555554 69999999999999955777 99999966433 122221 244589999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC----cEEEEEeCCceeeecee
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP----AEITWIDGTGTVMSNVR 180 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~----~~i~W~k~~~~l~~~~~ 180 (1011)
|.|.+.+.. +..+..+.|+|+.+|..+.+... ...+|+.+ |+|.+....|. ++|+|+||+.++.....
T Consensus 74 Y~C~a~n~~----~~~~~~~~ltV~~~P~~~~i~~~---~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~ 145 (210)
T 1gsm_A 74 RVCVGSCGG----RTFQHTVQLLVYAFPNQLTVSPA---ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQA 145 (210)
T ss_dssp EEEEEEETT----EEEEEEEEEEEEBCCSEEEEESS---SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEE
T ss_pred EEEEEEeCC----CceEEEEEEEEEecCCCcEEccc---eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccc
Confidence 999999853 34667899999998887666532 45678888 99995555674 59999999998854321
Q ss_pred EE--E------eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 181 VT--E------EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 181 ~~--~------~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.. . ........+...++|.+.....+|.+.|+|+|.+.....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~ 195 (210)
T 1gsm_A 146 LGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGL 195 (210)
T ss_dssp CCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTE
T ss_pred cccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCC
Confidence 11 1 001223477888899999999999999999999876554
No 287
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.70 E-value=1.4e-16 Score=167.75 Aligned_cols=194 Identities=21% Similarity=0.269 Sum_probs=131.8
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCC--eecC------Cc---ccCCC-CcceEEeecCCCceeEEEEe
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDD--FALG------PH---RNLSG-FDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~--~~l~------~~---~~~~~-~~r~~i~~~~~~~~~~L~I~ 95 (1011)
+.+...|..+.+.+|++|+|.|....+.+.+.|+|.. .... .. ..... .+|+.+..+ ..+.++|+|.
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~ 81 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERP-DGSYFTLKIQ 81 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEEECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECC-TTSCEEEEEC
T ss_pred cceEeCCceEEecCCCCEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEec-cCceEEEEEC
Confidence 4577788999999999999999554577799999821 1100 00 00011 168887764 3567899999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC---CCCCee--ecCCeeeecCCCcEEEEEEccCCCCCc-EEEEE
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP---PDPPRI--VQGDTLYTTEDREIELECISANGKPPA-EITWI 169 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~---p~~~~i--~~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~ 169 (1011)
+++.+|+|.|+|.+.+.........+..+.|+|... ..+|.+ ..+....+.+|+.+.|.|.+.+..|.+ .++|+
T Consensus 82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~ 161 (245)
T 4ei6_B 82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 161 (245)
T ss_dssp SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence 999999999999998632222234455678888852 223333 233344466799999999954446665 89999
Q ss_pred eCCceeeeceeEEEeee-----cCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCCCc
Q psy17146 170 DGTGTVMSNVRVTEEAS-----VDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTADRT 222 (1011)
Q Consensus 170 k~~~~l~~~~~~~~~~~-----~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g~~ 222 (1011)
|++..+..+........ .....+...+.|.|.....+| +|.|+|.|.|.....
T Consensus 162 ~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~ 220 (245)
T 4ei6_B 162 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 220 (245)
T ss_dssp ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred ECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCC
Confidence 99888765443321110 023356666789999998888 999999999976544
No 288
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.70 E-value=9.9e-17 Score=166.29 Aligned_cols=187 Identities=16% Similarity=0.206 Sum_probs=126.2
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCC--eecC----Cc-------ccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDD--FALG----PH-------RNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~--~~l~----~~-------~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+|..+.+.+|++|+|.|.+.+. .+.+.|+|+. ..+. .. ......+|+.+..+...+.++|+|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (225)
T 1op3_H 6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK 85 (225)
T ss_dssp EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred cCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence 4667899999999999999863 4689999864 2110 00 00112368888776556778999999
Q ss_pred cccCCCceEEEEEEeCCCC----CcceeeeEEEEEEEcC-CCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEE
Q psy17146 97 VMLDDDARYQCQVSTGILG----EPAIRSRFATLTVLVP-PDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWI 169 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~----~~~~~s~~~~l~V~~~-p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~ 169 (1011)
++.+|+|.|+|.+.+..+. ........+.|+|... +.+|.+. ..+...+.+|+.+.|.|.+.+..|.+ .++|+
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~ 165 (225)
T 1op3_H 86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN 165 (225)
T ss_dssp CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECC
T ss_pred CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEe
Confidence 9999999999999885320 1012234468888863 3345443 22222356899999999955445876 99999
Q ss_pred eCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 170 DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 170 k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
|++..+... ........++ .+...+.|.|.++..+| |.|+|.|.|..+..
T Consensus 166 ~~~~~~~~~-~~~~~~~~~g-~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~ 215 (225)
T 1op3_H 166 SGALTSGVH-TFPAVLQSSG-LYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 215 (225)
T ss_dssp TTSCCTTCE-ECCCEECTTS-CEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTE
T ss_pred cCCCcCCeE-ecCceeCCCC-CEEEEEEEEEechhcCC-CcEEEEEEcCCCCc
Confidence 988653211 1100112233 44556789999998888 99999999976643
No 289
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.70 E-value=6.8e-17 Score=167.19 Aligned_cols=169 Identities=18% Similarity=0.333 Sum_probs=120.0
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCCc--e-------------------------ee-----cCCCcEEEe
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDSD--K-------------------------VV-----GNSPNLTLL 596 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~~--~-------------------------~~-----~~~~~L~I~ 596 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|+... . .. ....+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (222)
T 1q9r_B 7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN 86 (222)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence 4456789999999999999876 679999986411 0 00 112489999
Q ss_pred ecCCCCCEEEEEEEEecCC--C--ceeeEEEEEEcC----CCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEEC
Q psy17146 597 MTSDDLAGRYYCKASVMGF--P--EVGAEATVYLKG----RPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYR 666 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~--~--~~s~~~~l~V~~----~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~ 666 (1011)
+++.+|+|.|.|.+.|... . .....+.|.|.. +|.+.. .....+..|+.++|.|.+.|. |.|+.|+|+++
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 166 (222)
T 1q9r_B 87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG 166 (222)
T ss_dssp SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecC
Confidence 9999999999999998321 1 233445677754 466652 333346789999999999996 87768999999
Q ss_pred CeEecccCCCCeE-EecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 667 GEEIGVGSSDDYS-VLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 667 g~~l~~~~~~~~~-~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
|..+... .+. ...+. .....+.|.|.++..+| |.|+|.|.|..|.......|.
T Consensus 167 g~~~~~~---~~~~~~~~~-~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~ 220 (222)
T 1q9r_B 167 SLSSGVH---TFPAVLQSD-LYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV 220 (222)
T ss_dssp TBCTTEE---EEEEEEETT-EEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred CeEcceE---eccccccCC-cEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEecc
Confidence 9875421 111 11110 01124689999999999 999999999999877666554
No 290
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.70 E-value=1.2e-16 Score=167.62 Aligned_cols=185 Identities=16% Similarity=0.191 Sum_probs=120.8
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCc--------ccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPH--------RNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+.|...|.++.+.+|++|+|.|.+.+ +.+.+.|+|+....... ......+|+.+.. ..+.++|+|.+++
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~ 79 (242)
T 2znx_A 2 IVLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVE 79 (242)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCC
T ss_pred CcEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec--CCCEEEEEECCCC
Confidence 35777889999999999999999987 46799999964211000 0011235777654 2356789999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC-----------CCeeecCCeeeecCCCcEEEEEEccCCCC--CcE
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD-----------PPRIVQGDTLYTTEDREIELECISANGKP--PAE 165 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~-----------~~~i~~~~~~~v~eg~~v~L~C~~~~g~P--~~~ 165 (1011)
.+|+|.|+|.+.+... ...+..+.|.|..++. +..+..++...+.+|+.++|.|. +.+.| .+.
T Consensus 80 ~~D~G~Y~C~~~n~~~---~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~-~~g~~~~~~~ 155 (242)
T 2znx_A 80 TEDFGMYFCQQSNSXP---YTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCS-VTGDSITSDY 155 (242)
T ss_dssp GGGCEEEEEEECSSSS---CEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEE-EESSCGGGSC
T ss_pred hHHCEEEEEeEecCCc---eEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEE-EEccccCCcc
Confidence 9999999999987532 1223446788877553 22344444456899999999999 55665 578
Q ss_pred EEEEeCC--ceeee------ceeEEEeeecCCceEEE------EEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 166 ITWIDGT--GTVMS------NVRVTEEASVDGRRTTV------KSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 166 i~W~k~~--~~l~~------~~~~~~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
+.|+|++ ..+.. ...........++.... ..+|.|.+++.+|+|.|+|.|.|.
T Consensus 156 v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 156 XSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp EEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred eeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 9999953 22210 00000000112222111 258999999999999999999873
No 291
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.70 E-value=1.8e-16 Score=166.19 Aligned_cols=165 Identities=15% Similarity=0.278 Sum_probs=121.2
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCC----CCeEEEEecC--Cce--ee-------------------cCCCcEEEeec
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNP----APEITWIHED--SDK--VV-------------------GNSPNLTLLMT 598 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p----~p~v~W~k~~--~~~--~~-------------------~~~~~L~I~~v 598 (1011)
.+...|..+.+.+|++++|.|.+.+.| .+.+.|+|++ ... .. ....+|+|.++
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 82 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV 82 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence 355667889999999999999999998 7899999963 111 10 11237999999
Q ss_pred CCCCCEEEEEEEEecCCCceeeEEEEEEcCCC-------eeecCCceeeecCCcEEEEEEEEecCC--CCeEEEEEC--C
Q psy17146 599 SDDLAGRYYCKASVMGFPEVGAEATVYLKGRP-------TIISHRTQFGIPGDTARVECSAFSIPP--PEKVTWSYR--G 667 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P-------~i~~~~~~~v~~G~~v~L~C~~~g~p~--p~~v~W~~~--g 667 (1011)
+.+|+|.|+|.|.|.........+.|.|..++ .+..+....+.+|++++|.|.+.|.|. + .+.|+|+ |
T Consensus 83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~-~v~W~k~~~g 161 (240)
T 1moe_A 83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDT-YMHWVKQRPE 161 (240)
T ss_dssp CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGS-CEEEEEECTT
T ss_pred ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCC-EEEEEEECCC
Confidence 99999999999998422234556778887643 233556778999999999999999874 5 8999996 3
Q ss_pred eEec---------------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 668 EEIG---------------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 668 ~~l~---------------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
..+. .....++.+..+ ......+|.|.+++.+|+|.|+|.|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 162 QGLEWIGRIDPANGNSKYVPKFQGKATITAD--TSSNTAYLQLTSLTSEDTAVYYCAPFGY 220 (240)
T ss_dssp SCCEEEEEEETTTTEEEECGGGTTTEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred CCcEEEEEEcccCCccccCccccccEEEEEc--ccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 2221 011345555432 1234578999999999999999999953
No 292
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.70 E-value=9.4e-17 Score=165.89 Aligned_cols=184 Identities=14% Similarity=0.201 Sum_probs=125.9
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--e---cCC-c---------ccCCCCcceEEeecCCCceeEEE
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--A---LGP-H---------RNLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~---l~~-~---------~~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
..|..+.+.+|++|+|.|.+.+. .+.+.|+|++. . +.. . ......+|+.+..+...+.++|+
T Consensus 5 ~~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 84 (220)
T 1pz5_B 5 EESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQ 84 (220)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred eccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEE
Confidence 34778899999999999999863 46899999642 1 100 0 00011368888765555678999
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc-CCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-EEEEEe
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV-PPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA-EITWID 170 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k 170 (1011)
|.+++.+|+|.|+|.+.+.... .......+.|+|.. .+.+|.+.. .+...+.+|+.+.|.|.+.+..|.+ .++|+|
T Consensus 85 I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 163 (220)
T 1pz5_B 85 MNNLRAEDTGIYYCTRGGAVGA-MDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNY 163 (220)
T ss_dssp ECSCCGGGCEEEEEEEECTTSS-EEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGG
T ss_pred EccCCHHHCEEEEEEEecCCcc-cceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEec
Confidence 9999999999999999885311 11222446788874 234455432 3333467899999999955444988 999999
Q ss_pred CCceee--eceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 171 GTGTVM--SNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 171 ~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++.... ..... . .. ..+...+.|.|.++..+| |.|+|.|.|..|..
T Consensus 164 ~~~~~~~~~~~~~---~-~~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~ 211 (220)
T 1pz5_B 164 GALSSGVRTVSSV---L-QS-GFYSLSSLVTVPSSTWPS-QTVICNVAHPASKV 211 (220)
T ss_dssp GTCCTTEEECCCE---E-ET-TEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTE
T ss_pred CCcccceEEcCCc---c-cC-CeEEEEEEEEEcchhcCC-ceEEEEEEECCccE
Confidence 877421 11111 1 12 345556899999988877 99999999998865
No 293
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.70 E-value=2.4e-16 Score=166.09 Aligned_cols=165 Identities=16% Similarity=0.327 Sum_probs=118.6
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCC-----CCeEEEEecCC--ce--e-------------------ecCCCcEEEee
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNP-----APEITWIHEDS--DK--V-------------------VGNSPNLTLLM 597 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p-----~p~v~W~k~~~--~~--~-------------------~~~~~~L~I~~ 597 (1011)
.+...|..+.+.+|++++|.|.+.+.+ .+.+.|+|++. .. . .....+|+|.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 82 (247)
T 1svz_A 3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR 82 (247)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECC
Confidence 355667889999999999999999998 68999999642 11 0 01224799999
Q ss_pred cCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC--------------eeecCCceeeecCCcEEEEEEEEecC--CCCeE
Q psy17146 598 TSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP--------------TIISHRTQFGIPGDTARVECSAFSIP--PPEKV 661 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P--------------~i~~~~~~~v~~G~~v~L~C~~~g~p--~p~~v 661 (1011)
++.+|+|.|+|.|.|.........+.|.|..++ .+..+....+.+|++++|.|.+.+.| .+ .+
T Consensus 83 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~-~v 161 (247)
T 1svz_A 83 VEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDY-SM 161 (247)
T ss_dssp CCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGS-CE
T ss_pred CCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCc-EE
Confidence 999999999999998422223445678887643 34455556699999999999999985 45 89
Q ss_pred EEEECC--eEec----c-----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 662 TWSYRG--EEIG----V-----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 662 ~W~~~g--~~l~----~-----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
.|+|++ ..+. . ....++.+..+ ......+|.|.+++.+|+|.|.|.|.|.
T Consensus 162 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 162 HWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLD--TSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEE--GGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEe--cCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 999963 2111 0 01345555432 1233579999999999999999999996
No 294
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.70 E-value=1.9e-16 Score=157.34 Aligned_cols=155 Identities=21% Similarity=0.200 Sum_probs=111.6
Q ss_pred CCceeEEecCcEEEEEEEcCC--CCeeEEeeC-CeecCCcc------c--CCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 34 PQDQTAVVGSRVTLPCRVIDK--TGVLQWTKD-DFALGPHR------N--LSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~~--~~~v~W~k~-~~~l~~~~------~--~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
...+.+.+|++|+|.|.+..+ .+.|.|+|+ +..+.... . ....+|+.+. .+.++|+|.+++.+|+
T Consensus 6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~----~~~~sL~I~~v~~~D~ 81 (180)
T 2dru_A 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD----KTNGALRIYNVSKEDR 81 (180)
T ss_dssp CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEEC----TTTCCEEECSCCGGGC
T ss_pred cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEe----CCCccEEEcCCCHHHC
Confidence 457899999999999998654 569999995 32221100 0 1112577762 2345899999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEE
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVT 182 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~ 182 (1011)
|.|+|.+.+.. ..+..+.|.|..++..|.+.. ++..+.|.|.+..+ |.+.++|+|++..+..
T Consensus 82 G~Y~C~v~~~~-----~~~~~~~L~V~~~~~~P~i~~-------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~----- 143 (180)
T 2dru_A 82 GDYYMRMLHET-----EDQWKITMEVYEMVSKPMIYW-------ECSNATLTCEVLEG-TDVELKLYQGKEHLRS----- 143 (180)
T ss_dssp EEEEEEEESSS-----EEEEEEEEEEECCCCCCEEEE-------EGGGTEEEEECSSC-TTCEEEEEETTEEEEE-----
T ss_pred eEEEEEEEcCC-----eEEEEEEEEEECCCCCCEEEe-------cCCCEEEEEEeCCC-CCCEEEEEECCeECcC-----
Confidence 99999997642 356778899998766665532 34679999995466 9999999999887641
Q ss_pred EeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 183 EEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 183 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
. .. .+|.+.. .+|+|.|+|.|.|..+..
T Consensus 144 ---~-~~------~~l~~~~--~~d~g~Y~C~a~N~~~~~ 171 (180)
T 2dru_A 144 ---L-RQ------KTMSYQW--TNLRAPFKCKAVNRVSQE 171 (180)
T ss_dssp ---E-SS------SEEEEEC--SCCSSCEEEEEEETTEEE
T ss_pred ---C-CC------CEEEEEE--hhcCccEEEEEecCcCcc
Confidence 1 11 2455533 789999999999998765
No 295
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.70 E-value=2.7e-17 Score=170.14 Aligned_cols=181 Identities=25% Similarity=0.401 Sum_probs=124.2
Q ss_pred cCCceeEEecCcEEEEEEEcC--CCC----eeEEeeCCeecCCc-------ccCCCCcceEEeecC---CCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVID--KTG----VLQWTKDDFALGPH-------RNLSGFDRYAMIGSD---EEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~--~~~----~v~W~k~~~~l~~~-------~~~~~~~r~~i~~~~---~~~~~~L~I~~ 96 (1011)
.|.++.+.+|++|+|.|.+.. +.+ .+.|+|++...... ..+...+|+.+..+. ..+.++|.|.+
T Consensus 5 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~ 84 (221)
T 3eow_R 5 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFG 84 (221)
T ss_dssp CCCCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCC
T ss_pred CCCcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEcc
Confidence 367788999999999999965 222 49999997432110 111124677776532 23567999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcE-EEEEEccCCCCCcEEEEEeCCcee
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREI-ELECISANGKPPAEITWIDGTGTV 175 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v-~L~C~~~~g~P~~~i~W~k~~~~l 175 (1011)
++.+|+|.|+|.+.+...+ ..+..+.|+|..+|.......... .+|+.+ .|.|.+..++|.+.++|+|++...
T Consensus 85 v~~~D~G~Y~C~~~~~~~~---~~~~~~~L~V~~~P~~~~~~~~~~---~~g~~~~~l~C~~~~g~P~p~v~W~k~~~~~ 158 (221)
T 3eow_R 85 LRVEDEGSYTCLFVTFPQG---SRSVDIWLRVLAKPQNTAEVQKVQ---LTGEPVPMARCVSTGGRPPAQITWHSDLGGM 158 (221)
T ss_dssp SSCCCCSCBEEEEEESSSC---SCEEECCCCCCCCCEEEEEEECCC---CCSSSCCEEEEEEESCSSCCCEEEECSSSCC
T ss_pred CChHHCeEEEEEEEeCCCC---ceEEEEEEEEEECCCceeecCCcc---cCCceEEEEEEECCCccCCCeeEEEeCCCCC
Confidence 9999999999999985422 245667777777544322211111 578888 599996679999999999975544
Q ss_pred eeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 176 MSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
...... .......+...+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 159 ~~~~~~---~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~ 202 (221)
T 3eow_R 159 PQTSQV---PGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEK 202 (221)
T ss_dssp CCCEEE---CCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSS
T ss_pred Ccccee---ecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCC
Confidence 332221 11122233445789999999999999999999988765
No 296
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.70 E-value=1.4e-16 Score=165.30 Aligned_cols=172 Identities=21% Similarity=0.362 Sum_probs=117.7
Q ss_pred CCceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--cee-----------------------e-----cCCCcEEEee
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--DKV-----------------------V-----GNSPNLTLLM 597 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~~~-----------------------~-----~~~~~L~I~~ 597 (1011)
.|..+.+.+|++++|.|.+.+.+ .+.+.|+|++. ... . ....+|+|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (227)
T 1mju_H 6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS 85 (227)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence 45678899999999999999887 68999998742 110 0 1235899999
Q ss_pred cCCCCCEEEEEEEEecCCCceeeEEEEEEcC----CCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEec
Q psy17146 598 TSDDLAGRYYCKASVMGFPEVGAEATVYLKG----RPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIG 671 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~----~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~ 671 (1011)
++.+|+|.|.|.+.|.........+.|.|.. +|.+.. .....+..|+.++|.|.+.|. |.|..|+|+++|..+.
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~ 165 (227)
T 1mju_H 86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSG 165 (227)
T ss_dssp CCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred CCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCC
Confidence 9999999999999983211223345778864 465552 233346789999999999986 7666899999998653
Q ss_pred ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 672 VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
........ .. ......+.|.|..+..+| |.|+|.|.|..+.......+.+
T Consensus 166 ~~~~~~~~--~~-g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~ 215 (227)
T 1mju_H 166 VHTFPAVL--QS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEP 215 (227)
T ss_dssp EEECCCEE--ET-TEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred cEECCcee--cC-CeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCC
Confidence 21111111 10 001134689999999888 9999999998888776666655
No 297
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.70 E-value=2.6e-16 Score=166.67 Aligned_cols=167 Identities=17% Similarity=0.296 Sum_probs=121.8
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc---------------------eee-----cCCCcEEEeec
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD---------------------KVV-----GNSPNLTLLMT 598 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~---------------------~~~-----~~~~~L~I~~v 598 (1011)
..+...|..+.+.+|++++|.|.+.+.|.+.+.|+|.... ... ....+|+|.++
T Consensus 4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v 83 (256)
T 3tf7_C 4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV 83 (256)
T ss_dssp CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence 4567778899999999999999999999999999984311 001 12346999999
Q ss_pred CCCCCEEEEEEEEecCCC---ceeeEEEEEEcC--------------------CCeee-cCCceeeecCCcEEEEEEEEe
Q psy17146 599 SDDLAGRYYCKASVMGFP---EVGAEATVYLKG--------------------RPTII-SHRTQFGIPGDTARVECSAFS 654 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~~---~~s~~~~l~V~~--------------------~P~i~-~~~~~~v~~G~~v~L~C~~~g 654 (1011)
+.+|+|.|+|.|.|.... .....+.|.|.. +|.+. .+....+.+|++++|.|.+.+
T Consensus 84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~ 163 (256)
T 3tf7_C 84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTN 163 (256)
T ss_dssp CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECS
T ss_pred CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCC
Confidence 999999999999984221 233345677765 55565 445667889999999999988
Q ss_pred cCCCCeEEEEECC--eEe---cc----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 655 IPPPEKVTWSYRG--EEI---GV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 655 ~p~p~~v~W~~~g--~~l---~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
. .+ .+.|+|++ ..+ .. ....++.+... .....+|+|.+++.+|+|.|+|.|.|..|.
T Consensus 164 ~-~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 235 (256)
T 3tf7_C 164 S-HN-YMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRT---TQEDFFLTLESASPSQTSLYFCASSDAPGQ 235 (256)
T ss_dssp C-CS-EEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECC---SSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred C-ce-EEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeC---CCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence 7 66 89999842 111 10 01234444332 234568999999999999999999998773
No 298
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.70 E-value=1.9e-16 Score=167.49 Aligned_cols=176 Identities=20% Similarity=0.274 Sum_probs=124.0
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCC--CCeEEEEecC--Cc-----------------------eeec-----CCCcEE
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNP--APEITWIHED--SD-----------------------KVVG-----NSPNLT 594 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~--~~-----------------------~~~~-----~~~~L~ 594 (1011)
+...|..+.+.+|++++|.|.+.+.+ .+.+.|+|.. .. .... ...+|+
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 83 (253)
T 3uzq_A 4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH 83 (253)
T ss_dssp CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence 34556788899999999999999865 7799999932 11 1111 123499
Q ss_pred EeecCCCCCEEEEEEEEecCCCceeeEEEEEEcC---------------CCeee-cCCceeeecCCcEEEEEEEEecCCC
Q psy17146 595 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG---------------RPTII-SHRTQFGIPGDTARVECSAFSIPPP 658 (1011)
Q Consensus 595 I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~---------------~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p 658 (1011)
|.+++.+|+|.|+|.|.|.........+.|.|.. +|.+. .+....+.+|++++|.|.+.+.|.+
T Consensus 84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~ 163 (253)
T 3uzq_A 84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR 163 (253)
T ss_dssp ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence 9999999999999999983322234566777774 45555 4456789999999999999998765
Q ss_pred ---CeEEEEEC--CeEec----------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEE
Q psy17146 659 ---EKVTWSYR--GEEIG----------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIM 722 (1011)
Q Consensus 659 ---~~v~W~~~--g~~l~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~ 722 (1011)
..+.|+|+ +..+. .....++.... .+...+|+|.+++.+|+|.|+|.|.|..+.. ..-..
T Consensus 164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~ 239 (253)
T 3uzq_A 164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSG----SRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTK 239 (253)
T ss_dssp TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEE
T ss_pred CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeC----CCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEE
Confidence 37999995 22221 01124454432 2345689999999999999999999976532 23345
Q ss_pred EEec
Q psy17146 723 LKPQ 726 (1011)
Q Consensus 723 l~V~ 726 (1011)
|.|.
T Consensus 240 l~v~ 243 (253)
T 3uzq_A 240 LEIK 243 (253)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5554
No 299
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.69 E-value=1.9e-16 Score=166.67 Aligned_cols=194 Identities=19% Similarity=0.243 Sum_probs=132.2
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCC--eecC--------CcccCCCCcceEEeecCCCceeEEEEee
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDD--FALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~--~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.+...|..+.+.+|++|+|.|.+.+ +.+.+.|+|.. .... ........+|+.+..+ ..+.++|+|.+
T Consensus 2 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~ 80 (245)
T 3nfj_J 2 QTIHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRP-QDRQFILSSKK 80 (245)
T ss_dssp CEEEEECSEEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEE-ETTEEEEEESS
T ss_pred CeeeCCCceEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEec-CCCEEEEEECC
Confidence 35677889999999999999999997 67799999932 1110 0000122368877764 35678999999
Q ss_pred cccCCCceEEEEEEeCCC--CCcceeeeEEEEEEEc---CCCCCeee--cCCeeeecCCCcEEEEEEccCCCCCc-EEEE
Q psy17146 97 VMLDDDARYQCQVSTGIL--GEPAIRSRFATLTVLV---PPDPPRIV--QGDTLYTTEDREIELECISANGKPPA-EITW 168 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~--~~~~~~s~~~~l~V~~---~p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W 168 (1011)
++.+|+|.|+|.+.+..+ .........+.|+|.. ...+|.+. .+....+.+|+.+.|.|.+.+..|++ .++|
T Consensus 81 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W 160 (245)
T 3nfj_J 81 LLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSW 160 (245)
T ss_dssp CCGGGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CChhhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEE
Confidence 999999999999987211 1112334556788886 33344432 23333455699999999954445655 8999
Q ss_pred EeCCceeeeceeEEEeee-----cCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCCCc
Q psy17146 169 IDGTGTVMSNVRVTEEAS-----VDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTADRT 222 (1011)
Q Consensus 169 ~k~~~~l~~~~~~~~~~~-----~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g~~ 222 (1011)
+|++..+..+........ .....+...+.|.|.....+| .|.|+|.|.|.....
T Consensus 161 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~~~ 220 (245)
T 3nfj_J 161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 220 (245)
T ss_dssp EETTEEECTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCS
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCCCC
Confidence 999988765443221110 123456667889999998888 779999999986654
No 300
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.69 E-value=2.6e-16 Score=166.74 Aligned_cols=170 Identities=18% Similarity=0.268 Sum_probs=123.8
Q ss_pred ceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--cee-e---------------------------cCCCcEEEeecC
Q psy17146 552 YSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--DKV-V---------------------------GNSPNLTLLMTS 599 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~~~-~---------------------------~~~~~L~I~~v~ 599 (1011)
....+.+|++++|.|.+.+.+ .+.+.|+|... ... . ....+|+|.+++
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 89 (256)
T 3umt_A 10 GLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT 89 (256)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence 456699999999999999877 68999998531 110 0 112349999999
Q ss_pred CCCCEEEEEEEEec---CCCceeeEEEEEEcC----------------CCeeec-CCceeeecCCcEEEEEEEEecCCCC
Q psy17146 600 DDLAGRYYCKASVM---GFPEVGAEATVYLKG----------------RPTIIS-HRTQFGIPGDTARVECSAFSIPPPE 659 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~---~~~~~s~~~~l~V~~----------------~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~p~ 659 (1011)
.+|+|.|+|.|.|. ........+.|.|.. +|.+.. +....+.+|++++|.|.+.+.|.+
T Consensus 90 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~- 168 (256)
T 3umt_A 90 SEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS- 168 (256)
T ss_dssp GGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT-
T ss_pred cccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc-
Confidence 99999999999984 133445567788875 566664 556789999999999999999988
Q ss_pred eEEEEEC--CeEec----------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEEEEEec
Q psy17146 660 KVTWSYR--GEEIG----------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEIMLKPQ 726 (1011)
Q Consensus 660 ~v~W~~~--g~~l~----------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~ 726 (1011)
.+.|+|+ +..+. .....++.+.. .+...+|+|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus 169 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~ 244 (256)
T 3umt_A 169 NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSR----SGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIK 244 (256)
T ss_dssp CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEE----ETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEEEECCCCCcEEEEEeccccCCccCCCEEEec----CCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEE
Confidence 8999994 22221 01134555433 3345789999999999999999999976533 234556664
No 301
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=164.60 Aligned_cols=161 Identities=18% Similarity=0.305 Sum_probs=128.8
Q ss_pred cCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 627 KGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 627 ~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
..+|.|..+.+..+.+|+.++|.|.+.|.|.| .|.|+|+|..+......++.+.. .+..+.|.|.++..+|+|.|
T Consensus 17 ~~~P~~~~p~~~~~~~G~~v~l~C~~~g~p~p-~i~W~~~g~~l~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y 91 (215)
T 3mtr_A 17 MYAPKLQGPVAVYTWEGNQVNITCEVFAYPSA-TISWFRDGQLLPSSNYSNIKIYN----TPSASYLEVTPDSENDFGNY 91 (215)
T ss_dssp CEEEEEECCSEEEECTTCCEEEEEEEEEESCC-EEEEEETTEESSCSSSCSEEEEE----ETTEEEEEECCCSGGGCEEE
T ss_pred ecCCcccCCceEEEECCCCEEEEEEEeecCCC-EEEEEECCeECCCCCCccEEEec----CCCeeEEEEecCChhhCeEE
Confidence 35678877777889999999999999999999 99999999999865546666654 23368999999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCCCCCcccccccccccccc--cCC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGIEHHVTADGEKNQC--KES 784 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~W--~~~ 784 (1011)
+|.|.|..|..+..+.|.|. ..+.+|..+.+. ....++.++| +..
T Consensus 92 ~C~a~n~~g~~~~~~~l~v~--------------------------------~~P~~p~~~~~~-~~~~~~~l~w~~p~~ 138 (215)
T 3mtr_A 92 NCTAVNRIGQESLEFILVQA--------------------------------DTPSSPSIDQVE-PYSSTAQVQFDEPEA 138 (215)
T ss_dssp EEEEECSSCEEEEEEEEEEC--------------------------------CCCCCCEEEEEE-EETTEEEEEEECCSC
T ss_pred EEEEEECCCceEEEEEEEEC--------------------------------CCCCCCcceEEE-EecceEEEEEecCCc
Confidence 99999999999999988873 234466665553 4556789999 566
Q ss_pred CCCCCCcCcceeeecCcc------------------------cccccccc---c---CCCCCCC-ccccccc
Q psy17146 785 DNSSNISDIKLEFRTGSS------------------------VSNVHLDY---A---GHDSETG-SESVHTR 825 (1011)
Q Consensus 785 d~~s~I~~Y~ve~~~~~~------------------------~p~~~Y~f---A---~G~g~~s-s~~~~t~ 825 (1011)
+++++|..|.|+++.... .|...|.| | .|.|++| ...++|+
T Consensus 139 ~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~ 210 (215)
T 3mtr_A 139 TGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 210 (215)
T ss_dssp CCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECC
T ss_pred cCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEec
Confidence 889999999999886542 67778998 5 8999988 4345554
No 302
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.69 E-value=3.2e-16 Score=165.11 Aligned_cols=184 Identities=16% Similarity=0.244 Sum_probs=120.8
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC------CCeeEEeeCCe--ecC--C----cccCCCCcceEEeecCCCceeEEEE
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK------TGVLQWTKDDF--ALG--P----HRNLSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~------~~~v~W~k~~~--~l~--~----~~~~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
.+...|.++.+.+|++|+|.|.+.+. .+.+.|+|+.. .+. . .......+|+.+.. ..+.++|+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I 80 (247)
T 1svz_A 3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKI 80 (247)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEE
T ss_pred cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEecc--CCCEEEEEE
Confidence 46677899999999999999999874 47899999532 110 0 00011235777654 345679999
Q ss_pred eecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC-----------CCeeecCCeeeecCCCcEEEEEEccCCCC-
Q psy17146 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD-----------PPRIVQGDTLYTTEDREIELECISANGKP- 162 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~-----------~~~i~~~~~~~v~eg~~v~L~C~~~~g~P- 162 (1011)
.+++.+|+|.|+|.+.+... ...+..+.|.|..++. +..+..++...+.+|+.++|.|. +.+.|
T Consensus 81 ~~v~~~D~G~Y~C~~~n~~~---~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~-~~~~~~ 156 (247)
T 1svz_A 81 SRVEAEDLGIYYCFQGSHFP---PTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCK-ATNYAF 156 (247)
T ss_dssp SSCCGGGCEEEEEEECSSSS---CEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEE-EESSCG
T ss_pred CCCCHHHCEEEEEEEccCCc---cEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEE-EcCccc
Confidence 99999999999999987532 1233446788876542 23455555566899999999999 55554
Q ss_pred -CcEEEEEeCC--ceeee-------ceeEEEeeecCCceEEE------EEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 163 -PAEITWIDGT--GTVMS-------NVRVTEEASVDGRRTTV------KSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 163 -~~~i~W~k~~--~~l~~-------~~~~~~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
.+.+.|+|++ ..+.. +..........+|.... ..+|.|.+++.+|+|.|+|.|.|.
T Consensus 157 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 157 TDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp GGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred CCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 5799999964 21100 00000000112222211 258999999999999999999985
No 303
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.69 E-value=3e-16 Score=163.08 Aligned_cols=189 Identities=13% Similarity=0.207 Sum_probs=127.1
Q ss_pred eeecCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCe--ecC----Cc-cc-----CCCCcceEEeecCCCceeEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDF--ALG----PH-RN-----LSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~--~l~----~~-~~-----~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
+...|..+.+.+|++|+|.|.+.+ +...+.|+|... .+. .. .. -...+|+.+..+...+.++|+|
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (230)
T 1ypz_F 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (230)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence 556788999999999999999987 345899998642 110 00 00 0034788887765557889999
Q ss_pred eecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC--------CCCCeeecCCeeeecCCCcEEEEEEccCCCCC-cE
Q psy17146 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP--------PDPPRIVQGDTLYTTEDREIELECISANGKPP-AE 165 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~--------p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~-~~ 165 (1011)
.+++.+|+|.|.|.+.+............+.|+|... +..+.+..+....+.+|+.+.|.|.+.+.+|. +.
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~ 163 (230)
T 1ypz_F 84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIR 163 (230)
T ss_dssp CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCE
T ss_pred CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeE
Confidence 9999999999999998741111112234467888721 22233433333445678999999996555686 69
Q ss_pred EEEEe-CCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 166 ITWID-GTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 166 i~W~k-~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++|+| ++..+....... ....+ ..+...+.|.|.+... | |.|+|.|.|..+..
T Consensus 164 v~W~~~~g~~l~~~~~~~-~~~~~-~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~ 217 (230)
T 1ypz_F 164 VYWKEKDGNTILDSQEGD-TLKTN-DTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG 217 (230)
T ss_dssp EEEECTTSSCBCCCEECC-CEEET-TEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred EEEEccCCeEccccccce-eecCC-CCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence 99999 666654322211 11223 3555667899988875 4 99999999987754
No 304
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.69 E-value=2.3e-16 Score=163.93 Aligned_cols=186 Identities=18% Similarity=0.183 Sum_probs=124.1
Q ss_pred cCCceeEEecCcEEEEEEEcCCC-----CeeEEeeCC--eecC--Ccc--------cCCCCcceEEeecCCCceeEEEEe
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKT-----GVLQWTKDD--FALG--PHR--------NLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~-----~~v~W~k~~--~~l~--~~~--------~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.|..+.+.+|++|+|.|.+.+.. +.+.|+|+. ..+. ... .....+|+.+..+...+.++|+|.
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 85 (228)
T 3bae_H 6 ESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKIT 85 (228)
T ss_dssp EECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEEC
T ss_pred CCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEc
Confidence 46788999999999999998742 789999863 2210 000 001236888877655567899999
Q ss_pred ecccCCCceEEEEEEeCCCC-----CcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEE
Q psy17146 96 PVMLDDDARYQCQVSTGILG-----EPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EIT 167 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~-----~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~ 167 (1011)
+++.+|+|.|+|.+.+..+. ........+.|+|.. .+.+|.+. ..+...+.+|+.+.|.|.+.+.+|.+ .++
T Consensus 86 ~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~ 165 (228)
T 3bae_H 86 SVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT 165 (228)
T ss_dssp SCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEE
T ss_pred CCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEE
Confidence 99999999999999875310 000122346788874 33445544 23333457899999999955445887 999
Q ss_pred EEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 168 WIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 168 W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
|+|++..+....... .... ..+...+.|.|.++..+| |.|+|.|.|..+..
T Consensus 166 W~~~~~~~~~~~~~~--~~~~-~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~ 216 (228)
T 3bae_H 166 WNSGSLSSGVHTFPA--VLQS-DLYTLSSSVTVTSSTWPS-ESITCNVAHPASST 216 (228)
T ss_dssp EGGGTCCTTEEEEEE--EEET-TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred EeeCCcccCceEcCc--eeCC-CcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCC
Confidence 999887542111111 1112 355566889999988866 99999999998865
No 305
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A
Probab=99.69 E-value=4.8e-17 Score=177.17 Aligned_cols=199 Identities=9% Similarity=0.036 Sum_probs=142.8
Q ss_pred cCCceeeecCCcEEEEEEEEec-------CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSI-------PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~-------p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.|.+..+..|++++|.|.+.+. |.| .|.|++||..+.. .++.+.. +..+.|.|.++...| |.|
T Consensus 10 ~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p-~i~W~~~g~~i~~---~~~~~~~-----~~~~~L~i~~~~~~~-g~Y 79 (303)
T 1i1r_A 10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNAN-YIVWKTNHFTIPK---EQYTIIN-----RTASSVTFTDIASLN-IQL 79 (303)
T ss_dssp ESSSCEEETTCCEEEEEEECHHHHHHHTCCGG-GEEEEETTEECCG---GGCEEEE-----TTEEEEEECSCCCSE-EEE
T ss_pred ccCCceEeCCCCEEEEEEECCccccccCCChh-heEEEECCEECCh---hheeeeC-----CcEEEEEEcCcCCCc-eEE
Confidence 4556779999999999999974 777 8999999998853 2444432 235789999999884 999
Q ss_pred EEEEEcCCCCeEE---EEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCCCCCcccccccccccccc-c
Q psy17146 707 NCSVSNPYGSDSV---EIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGIEHHVTADGEKNQC-K 782 (1011)
Q Consensus 707 ~C~a~N~~G~~~~---~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~W-~ 782 (1011)
+|.|.|. |.... .+.|.+ ...|.+|.++.+.....+++.++| +
T Consensus 80 ~C~a~~~-g~~~~~~~~~~l~v--------------------------------~~~P~~P~~l~~~~~~~~~v~l~W~~ 126 (303)
T 1i1r_A 80 TCNILTF-GQLEQNVYGITIIS--------------------------------GLPPEKPKNLSCIVNEGKKMRCEWDG 126 (303)
T ss_dssp EEEEEET-TTEEEEEEEEEEEE--------------------------------ECCCCCCEEEEEEEETTSCCEEEEEC
T ss_pred EEecccC-CCcceEEEEEEEec--------------------------------cCCCCCCeeeEEEECCCCcEEEEccC
Confidence 9999884 54432 233333 223338888888887778999999 6
Q ss_pred CCCCCCCCcCcceeeecCcc---------------------cccccccc---c---CCCCCCCccccccccccccccccc
Q psy17146 783 ESDNSSNISDIKLEFRTGSS---------------------VSNVHLDY---A---GHDSETGSESVHTRIGVPLAGPVP 835 (1011)
Q Consensus 783 ~~d~~s~I~~Y~ve~~~~~~---------------------~p~~~Y~f---A---~G~g~~ss~~~~t~~~~P~~~P~~ 835 (1011)
+.+++. +++|.|+++.... .|+++|.| | +|.|.++...+.+...+|..+|.+
T Consensus 127 ~~~~~~-~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~ 205 (303)
T 1i1r_A 127 GRETHL-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHN 205 (303)
T ss_dssp CSCCSS-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEE
T ss_pred CCCCCC-CcCEEEEEEecCCCCccCCCcCCCceEEEECCcCcccccEEEEEEEEcCCCCcccCCEEECHHHeEecCCCcc
Confidence 667664 5799999874211 48999999 5 777765544455566677788887
Q ss_pred CCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 836 MDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 836 ~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
+..... ..+.+...|+|+||.. .||.+++|+|+||+.+...
T Consensus 206 ~~v~~~-~~~~~sv~l~W~~p~~--~~~~i~~Y~v~y~~~~~~~ 246 (303)
T 1i1r_A 206 LSVINS-EELSSILKLTWTNPSI--KSVIILKYNIQYRTKDAST 246 (303)
T ss_dssp EEEECC-SSSSSCEEEEEECCGG--GGTSCEEEEEEEEETTCSS
T ss_pred eEEEEe-cCCCCEEEEEECCCCC--CCcccEEEEEEEEeCCCCC
Confidence 765331 0022344569999654 6789999999999987543
No 306
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.69 E-value=3.8e-16 Score=165.55 Aligned_cols=181 Identities=19% Similarity=0.235 Sum_probs=120.2
Q ss_pred eecCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCeecC--------CcccCCCCcceEEeecCCCceeEEEEeeccc
Q psy17146 31 AMEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALG--------PHRNLSGFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 31 ~~~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~~l~--------~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
...|..+.+.+|++|+|.|.+.+ +.+.+.|+|++.... ........+|+.+... .+.++|+|.+++.
T Consensus 6 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~L~I~~v~~ 83 (256)
T 3ux9_B 6 LTQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKS--GTSASLAITGLQS 83 (256)
T ss_dssp CBCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEE--TTEEEEEECSCCG
T ss_pred EecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEcc--CCEEEEEECCCCh
Confidence 34566799999999999999986 356899999642111 0011112357777543 3567999999999
Q ss_pred CCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC------------------CCeeecCCeeeecCCCcEEEEEEccCCC
Q psy17146 100 DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD------------------PPRIVQGDTLYTTEDREIELECISANGK 161 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~------------------~~~i~~~~~~~v~eg~~v~L~C~~~~g~ 161 (1011)
+|+|.|+|.+.+.... ....+..+.|.|...+. .+.+..++...+.+|+.+.|.|. +.+.
T Consensus 84 ~DsG~Y~C~~~~~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~-~~~~ 161 (256)
T 3ux9_B 84 EDEADYYCQVRDNNEN-EWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCA-ASGF 161 (256)
T ss_dssp GGCEEEEEEEEETTTT-EEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEE-EESS
T ss_pred hhCEEEEEEEEECCCC-ceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEE-EeCC
Confidence 9999999999885322 22344557788876552 23455555667899999999999 5565
Q ss_pred C--CcEEEEEeCC--ceeeec-----------------eeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 162 P--PAEITWIDGT--GTVMSN-----------------VRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 162 P--~~~i~W~k~~--~~l~~~-----------------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
| .+.+.|+|++ ..+..- .++........ ...+|+|.+++.+|+|.|+|.|.|..
T Consensus 162 ~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 162 TFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSK----NTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp CGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTT----TEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred cccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCC----CEEEEEECCCChhhCEEEEEEEEcCC
Confidence 5 7899999863 222100 01111111111 12469999999999999999999864
No 307
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.69 E-value=2.2e-17 Score=172.39 Aligned_cols=176 Identities=15% Similarity=0.240 Sum_probs=121.0
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCC-C-eEEEEecCC--ce------------------ee---cCCCcEEEeecC
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPA-P-EITWIHEDS--DK------------------VV---GNSPNLTLLMTS 599 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~-p-~v~W~k~~~--~~------------------~~---~~~~~L~I~~v~ 599 (1011)
+.+.. |..+.+.+|++++|.|.+.+.+. + .+.|+|++. .. .. ....+|+|.+++
T Consensus 21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 99 (234)
T 2j6e_L 21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLR 99 (234)
T ss_dssp CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCC
T ss_pred cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCC
Confidence 44445 77888999999999999998654 4 799999742 11 00 123489999999
Q ss_pred CCCCEEEEEEEEecCCC---ceeeEEEEEEc----CCCeeec-CCceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEe
Q psy17146 600 DDLAGRYYCKASVMGFP---EVGAEATVYLK----GRPTIIS-HRTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEI 670 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~~---~~s~~~~l~V~----~~P~i~~-~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l 670 (1011)
.+|+|.|+|.|.|. .+ .....+.|.|. .+|.+.. +....+..|+.++|.|.+.|.++ +..|+|+|||+.+
T Consensus 100 ~~D~G~Y~C~~~~~-~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l 178 (234)
T 2j6e_L 100 SEDEADYYCATWDD-SLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPV 178 (234)
T ss_dssp STTCSEEEEEEEET-TTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEEC
T ss_pred HHHCEEEEEEEEcC-CcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEEC
Confidence 99999999999994 33 23334566663 4566552 23333446899999999998644 3489999999998
Q ss_pred cccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEE
Q psy17146 671 GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIM 722 (1011)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 722 (1011)
..+.................+.|.|.++..+|.|.|+|.|.|..+..+.++.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 230 (234)
T 2j6e_L 179 KAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 230 (234)
T ss_dssp CSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEEC
T ss_pred CCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEecc
Confidence 6321000000000000123468999999999999999999999987666553
No 308
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=169.49 Aligned_cols=190 Identities=12% Similarity=0.166 Sum_probs=111.2
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCe--ecC--Ccc---------cCCCCcceEEeecCCCceeEE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDF--ALG--PHR---------NLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~--~l~--~~~---------~~~~~~r~~i~~~~~~~~~~L 92 (1011)
+|.+...|.++.+.+|++|+|.|.+.+ +.+.+.|+|... ... ... .-...+|+.+..+...+.++|
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM 81 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence 366788899999999999999999987 566899998421 110 000 001112444444445567789
Q ss_pred EEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC--------------CCeee-cCCeeeecCCCcEEEEEEc
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD--------------PPRIV-QGDTLYTTEDREIELECIS 157 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~--------------~~~i~-~~~~~~v~eg~~v~L~C~~ 157 (1011)
+|.+++.+|+|.|+|.+.+.... .......+.|.|..... .+.+. .+..+.+.+|+++.|.|.+
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~ 160 (259)
T 3omz_A 82 ILRNLIENDSGVYYCATWDQNYY-KKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLY 160 (259)
T ss_dssp EESSCCGGGCEEEEEEEECTTSS-CEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEE
T ss_pred EECCCCcccCEEEEEEEeeCCcc-ccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEEC
Confidence 99999999999999999875321 12345557788887532 23344 3456788999999999984
Q ss_pred cCCCCCcEEEEEeCCc--eeeeceeEE--EeeecCCceEEE------EEEEEEeeccCcCCcEEEEEEEe
Q psy17146 158 ANGKPPAEITWIDGTG--TVMSNVRVT--EEASVDGRRTTV------KSTLVLTPKKEHHNTTFTCQAQN 217 (1011)
Q Consensus 158 ~~g~P~~~i~W~k~~~--~l~~~~~~~--~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C~a~n 217 (1011)
....|.+.+.|+|++. .+..-.... ......+|.... ...|.|.+++.+|+|.|+|.+.+
T Consensus 161 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 230 (259)
T 3omz_A 161 ETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE 230 (259)
T ss_dssp ECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred CCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence 4435889999998532 111000000 000001111110 24699999999999999999985
No 309
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.69 E-value=1.3e-15 Score=152.62 Aligned_cols=164 Identities=17% Similarity=0.202 Sum_probs=120.1
Q ss_pred eEEEcCCCcEEEEEEEecCCCC--eEEEEecCCce----eecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEE
Q psy17146 553 SVQVDRGAGVNLLCDVDGNPAP--EITWIHEDSDK----VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYL 626 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p~p--~v~W~k~~~~~----~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 626 (1011)
++.+..|++++|.|.+ +.|.| .|.|++.+..+ .......|.|.+++.+|+|.|.|.|.| ..+..+..+.|.|
T Consensus 16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n-~~~~~~~~~~ltV 93 (210)
T 1gsm_A 16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSC-GGRTFQHTVQLLV 93 (210)
T ss_dssp EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred ceEEeCCCCEEEEEEC-CCCCCCcceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEe-CCCceEEEEEEEE
Confidence 4789999999999999 99888 99999976322 234457899999999999999999999 5677888999999
Q ss_pred cCCCeeecCCceeeecCCcEEEEEEEEec-CCC---CeEEEEECCeEecccCCCCeEEe--------cCCcCccceeEEE
Q psy17146 627 KGRPTIISHRTQFGIPGDTARVECSAFSI-PPP---EKVTWSYRGEEIGVGSSDDYSVL--------EDPLKEGIKSTLI 694 (1011)
Q Consensus 627 ~~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p---~~v~W~~~g~~l~~~~~~~~~~~--------~~~~~~~~~~~L~ 694 (1011)
..+|............|+.+ |+|.+.|. |.+ .+|+|+|||++|.......-.+. .........++|.
T Consensus 94 ~~~P~~~~i~~~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~ 172 (210)
T 1gsm_A 94 YAFPNQLTVSPAALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWR 172 (210)
T ss_dssp EBCCSEEEEESSSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEE
T ss_pred EecCCCcEEccceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEEEe
Confidence 99997653212267788888 99999987 642 38999999999963211010110 0001112345677
Q ss_pred EcCCCCCCCEEEEEEEEcCCCCeEE
Q psy17146 695 IRESRHDHFGVYNCSVSNPYGSDSV 719 (1011)
Q Consensus 695 I~~~~~~d~G~Y~C~a~N~~G~~~~ 719 (1011)
+.....+|.+.|+|.|.|.+-....
T Consensus 173 ~~~~~~D~~~~~tC~a~~~L~~~~~ 197 (210)
T 1gsm_A 173 LPPLGTPVPPALYCQATMRLPGLEL 197 (210)
T ss_dssp CCCCCSSCCSEEEEEEEEEETTEEE
T ss_pred ecCCcccCCceEEEEEEeeCCCCcc
Confidence 6666666668999999998864443
No 310
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.68 E-value=7.1e-16 Score=163.41 Aligned_cols=163 Identities=17% Similarity=0.337 Sum_probs=118.2
Q ss_pred cCCceEEEcCCCcEEEEEEEecC--CCCeEEEEecCCc--ee---------------------ecCCCcEEEeecCCCCC
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDSD--KV---------------------VGNSPNLTLLMTSDDLA 603 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~~--~~---------------------~~~~~~L~I~~v~~~d~ 603 (1011)
..|..+.+.+|++++|.|.+.+. +.+.+.|+|++.. .. .....+|+|.+++.+|+
T Consensus 7 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds 86 (256)
T 3ux9_B 7 TQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDE 86 (256)
T ss_dssp BCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred ecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhC
Confidence 34557889999999999999988 7889999996311 10 01123799999999999
Q ss_pred EEEEEEEEecCCC--ceeeEEEEEEcCCC---------------------eeecCCceeeecCCcEEEEEEEEecC--CC
Q psy17146 604 GRYYCKASVMGFP--EVGAEATVYLKGRP---------------------TIISHRTQFGIPGDTARVECSAFSIP--PP 658 (1011)
Q Consensus 604 G~Y~C~a~n~~~~--~~s~~~~l~V~~~P---------------------~i~~~~~~~v~~G~~v~L~C~~~g~p--~p 658 (1011)
|.|+|.|.|.... .....+.|.|..+| .+..+....+.+|++++|.|.+.+.+ .+
T Consensus 87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~ 166 (256)
T 3ux9_B 87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSY 166 (256)
T ss_dssp EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGS
T ss_pred EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCccccc
Confidence 9999999983221 33455678887765 45555566689999999999999887 56
Q ss_pred CeEEEEEC--CeEec---------------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 659 EKVTWSYR--GEEIG---------------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 659 ~~v~W~~~--g~~l~---------------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
.+.|+|+ +..+. .....++.+..+. .....+|+|.+++.+|+|.|+|.|.|..
T Consensus 167 -~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 167 -AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDN--SKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp -EEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEET--TTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred -EEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecC--CCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 8999997 33221 0122366655431 2335679999999999999999999974
No 311
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.68 E-value=9.8e-17 Score=164.41 Aligned_cols=165 Identities=19% Similarity=0.272 Sum_probs=117.4
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--c----------------------eeec-----CCCcEEEeecC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--D----------------------KVVG-----NSPNLTLLMTS 599 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~----------------------~~~~-----~~~~L~I~~v~ 599 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|++. . .... ...+|+|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 86 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT 86 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence 5567889999999999999886 48999998631 1 1110 12389999999
Q ss_pred CCCCEEEEEEEEecCCCceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEeccc
Q psy17146 600 DDLAGRYYCKASVMGFPEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVG 673 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~ 673 (1011)
.+|+|.|+|.|.|. . .....+.|.|. .+|.+. .+....+..|+.++|.|.+.|. |.|..|+|+++|..+...
T Consensus 87 ~~D~G~Y~C~~~~~-~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~ 164 (210)
T 3d9a_H 87 TEDTATYYCANWDG-D-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH 164 (210)
T ss_dssp GGGCEEEEEEETTS-S-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred cccCEEEEEEEecC-c-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceE
Confidence 99999999999983 2 22334567775 356665 3334457789999999999998 777689999999865321
Q ss_pred CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 674 SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
..... ... ......+.|.|..+..+| |.|+|.|.|..|......
T Consensus 165 ~~~~~--~~~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~ 208 (210)
T 3d9a_H 165 TFPAV--LQS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK 208 (210)
T ss_dssp ECCCE--EET-TEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred EcCCc--cCC-CcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccccc
Confidence 11111 111 001124679999998877 999999999999875543
No 312
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.68 E-value=3.3e-16 Score=164.19 Aligned_cols=184 Identities=20% Similarity=0.274 Sum_probs=124.0
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC-----CCeeEEeeCCe--ecC--C----cccCCCCcceEEeecCCCceeEEEEe
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKDDF--ALG--P----HRNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~~~--~l~--~----~~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.|...|.++.+.+|++|+|.|.+.+. .+.+.|+|++. .+. . ........|+.+.. ..+.++|+|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~ 80 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIID 80 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEES
T ss_pred ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe--cCCeEEEEEc
Confidence 46778899999999999999999874 45899999632 110 0 00111235777754 3466789999
Q ss_pred ecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC----CCeeecCCeeeecCCCcEEEEEEccCCCC--CcEEEEE
Q psy17146 96 PVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD----PPRIVQGDTLYTTEDREIELECISANGKP--PAEITWI 169 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~----~~~i~~~~~~~v~eg~~v~L~C~~~~g~P--~~~i~W~ 169 (1011)
+++.+|+|.|+|.+.+.... ..+..+.|+|...+. ...+..+....+.+|+.+.|.|. +.+.| .+.+.|+
T Consensus 81 ~v~~~D~G~Y~C~~~n~~~~---~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~-~~g~p~~~~~v~W~ 156 (240)
T 1moe_A 81 PVEADDVATYYCQQTNEDPY---TFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCT-ASGFNIKDTYMHWV 156 (240)
T ss_dssp SCCGGGCEEEEEEECSSSSC---CBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEE-EESSCGGGSCEEEE
T ss_pred CCChhhCEEEEEEEccCCce---eecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEE-EcCccCCCCEEEEE
Confidence 99999999999999886321 133457788877542 22344556678899999999999 56666 4699999
Q ss_pred eCC--ceeee-------ceeEEEeeecCCceEEE------EEEEEEeeccCcCCcEEEEEEEeC
Q psy17146 170 DGT--GTVMS-------NVRVTEEASVDGRRTTV------KSTLVLTPKKEHHNTTFTCQAQNT 218 (1011)
Q Consensus 170 k~~--~~l~~-------~~~~~~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C~a~n~ 218 (1011)
|++ ..+.. +..........++.... ..+|.|.+++.+|+|.|+|.|.+.
T Consensus 157 k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 157 KQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY 220 (240)
T ss_dssp EECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred EECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 962 22210 00000001112222211 257999999999999999999853
No 313
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.68 E-value=1.8e-17 Score=173.09 Aligned_cols=171 Identities=18% Similarity=0.313 Sum_probs=100.7
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--e--ee-------------------cCCCcEEEeecCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--K--VV-------------------GNSPNLTLLMTSD 600 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--~--~~-------------------~~~~~L~I~~v~~ 600 (1011)
.+.+...|..+.+.+|++++|.|.+.+.|.+.+.|+|++.. . .. ....+|+|.+++.
T Consensus 23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 102 (233)
T 3bqu_C 23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS 102 (233)
T ss_dssp CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence 44556667888899999999999999998889999986421 1 00 1123799999999
Q ss_pred CCCEEEEEEEEecCCCceeeEEEEEEcC---CCeeec-CCceeeecCCcEEEEEEEEecC-CCCeEEEEECCeEecccCC
Q psy17146 601 DLAGRYYCKASVMGFPEVGAEATVYLKG---RPTIIS-HRTQFGIPGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGSS 675 (1011)
Q Consensus 601 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~~---~P~i~~-~~~~~v~~G~~v~L~C~~~g~p-~p~~v~W~~~g~~l~~~~~ 675 (1011)
+|+|.|+|.|.|...........|.|.. +|.+.. +....+..|+.++|.|.+.|.+ .+..|+|+|||..+..+..
T Consensus 103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 182 (233)
T 3bqu_C 103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL 182 (233)
T ss_dssp CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEE
T ss_pred HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCce
Confidence 9999999999984222233334566654 677663 3333345799999999999964 4447999999998763200
Q ss_pred CCeEEecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 676 DDYSVLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 676 ~~~~~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
.......+ .++ ..+.|.|..+..+|.|.|+|.|.|....
T Consensus 183 ~~~~~~~~--~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 183 NSWTDQDS--KDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp EEECCCCT--TTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred EecCCccC--CCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 00001100 111 3468999999999999999999998654
No 314
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.68 E-value=1.8e-16 Score=169.44 Aligned_cols=172 Identities=16% Similarity=0.253 Sum_probs=117.7
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC------------------------ceee----cCCCcEEEee
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS------------------------DKVV----GNSPNLTLLM 597 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~------------------------~~~~----~~~~~L~I~~ 597 (1011)
.+...|..+.+.+|++++|.|.+.+ +.+.+.|+|... +... ..+.+|+|.+
T Consensus 29 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~ 107 (270)
T 3qib_D 29 KVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQS 107 (270)
T ss_dssp CCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESS
T ss_pred eEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECC
Confidence 3455567788999999999999865 778999998321 1111 1245899999
Q ss_pred cCCCCCEEEEEEEEecC---CCceeeEEEEEEcC------CCeee--cCCceeeecCCcEEEEEEEEe-cCCCCeEEEEE
Q psy17146 598 TSDDLAGRYYCKASVMG---FPEVGAEATVYLKG------RPTII--SHRTQFGIPGDTARVECSAFS-IPPPEKVTWSY 665 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~---~~~~s~~~~l~V~~------~P~i~--~~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~ 665 (1011)
++.+|+|.|.|.+.+.. .......+.|.|.. +|.+. .+....+..|+.++|.|.+.| .|.|..++|+|
T Consensus 108 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k 187 (270)
T 3qib_D 108 SEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 187 (270)
T ss_dssp CCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEE
Confidence 99999999999999622 22333455677765 56654 334444567999999999999 56665899999
Q ss_pred CCeEecccCCCCeEEec--CCcCcc---ceeEEEEcCCCCCC-CEEEEEEEEcCCCCeE
Q psy17146 666 RGEEIGVGSSDDYSVLE--DPLKEG---IKSTLIIRESRHDH-FGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 666 ~g~~l~~~~~~~~~~~~--~~~~~~---~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~~ 718 (1011)
||..+............ ....++ ..+.|.|.....+| .|.|+|.|.|......
T Consensus 188 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~~ 246 (270)
T 3qib_D 188 NGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 246 (270)
T ss_dssp TTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCTT
T ss_pred CCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCCc
Confidence 99998642100000000 000011 23678898888888 9999999999877554
No 315
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.68 E-value=1.8e-16 Score=163.84 Aligned_cols=169 Identities=17% Similarity=0.258 Sum_probs=119.0
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--c-------------------------eee-----cCCCcEEEe
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--D-------------------------KVV-----GNSPNLTLL 596 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~-------------------------~~~-----~~~~~L~I~ 596 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|++. . ... ....+|+|.
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (220)
T 1pz5_B 7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN 86 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence 5567899999999999999877 78999998642 1 000 012389999
Q ss_pred ecCCCCCEEEEEEEEecCCC--ceeeEEEEEEc----CCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCe
Q psy17146 597 MTSDDLAGRYYCKASVMGFP--EVGAEATVYLK----GRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGE 668 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~~--~~s~~~~l~V~----~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~ 668 (1011)
+++.+|+|.|+|.+.|.... .....+.|.|. .+|.+.. +....+.+|+.++|.|.+.|. |.|+.|+|++++.
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~ 166 (220)
T 1pz5_B 87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGAL 166 (220)
T ss_dssp SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred cCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCc
Confidence 99999999999999984211 22244677775 3566652 333456789999999999998 8777899999987
Q ss_pred EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
.+......... .. ......+.|.|.++..+| |.|+|.|.|..|..++++.+
T Consensus 167 ~~~~~~~~~~~--~~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~ 217 (220)
T 1pz5_B 167 SSGVRTVSSVL--QS-GFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKEI 217 (220)
T ss_dssp CTTEEECCCEE--ET-TEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred ccceEEcCCcc--cC-CeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeecC
Confidence 42100000000 00 001124789999988866 99999999999987776654
No 316
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.68 E-value=3.2e-16 Score=166.11 Aligned_cols=167 Identities=20% Similarity=0.304 Sum_probs=123.5
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecC--CCCeEEEEecCCc-------------------------eeec-----CCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDSD-------------------------KVVG-----NSP 591 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~~-------------------------~~~~-----~~~ 591 (1011)
+|.+...+..+.+.+|++++|.|.+.+. +.+.+.|+|.... .... ...
T Consensus 6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 85 (256)
T 3juy_B 6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA 85 (256)
T ss_dssp -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence 5667788889999999999999999984 6789999975311 1111 123
Q ss_pred cEEEeecCCCCCEEEEEEEEec-----------CCCceeeEEEEEEcCC---------------Ceee-cCCceeeecCC
Q psy17146 592 NLTLLMTSDDLAGRYYCKASVM-----------GFPEVGAEATVYLKGR---------------PTII-SHRTQFGIPGD 644 (1011)
Q Consensus 592 ~L~I~~v~~~d~G~Y~C~a~n~-----------~~~~~s~~~~l~V~~~---------------P~i~-~~~~~~v~~G~ 644 (1011)
+|+|.+++.+|+|.|.|.|.|. ........+.|.|..+ |.+. .+....+.+|+
T Consensus 86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~ 165 (256)
T 3juy_B 86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE 165 (256)
T ss_dssp EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence 5999999999999999999984 1334455677888763 3344 56677899999
Q ss_pred cEEEEEEEEecCC-CCeEEEEEC--CeEecc----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEE
Q psy17146 645 TARVECSAFSIPP-PEKVTWSYR--GEEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVS 711 (1011)
Q Consensus 645 ~v~L~C~~~g~p~-p~~v~W~~~--g~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~ 711 (1011)
+++|.|.+.+.|. + .+.|+|. +..+.. ....++.+.. .+...+|+|.+++.+|+|.|.|.|.
T Consensus 166 ~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~~~ 240 (256)
T 3juy_B 166 RATFSCRSSHSIRSR-RVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSG----SGTDFTLTITRVEPEDFALYYCQVY 240 (256)
T ss_dssp CEEEEEEESSCCTTC-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred CEEEEEEECCCcCCe-eEEEEEECCCCCcEEEEEecCccCCccCCcEEEEc----cCCEEEEEECCCCHhHCEEEEEEEe
Confidence 9999999999887 6 8999983 222210 1234555433 2345689999999999999999999
Q ss_pred cCCC
Q psy17146 712 NPYG 715 (1011)
Q Consensus 712 N~~G 715 (1011)
|..+
T Consensus 241 ~~~~ 244 (256)
T 3juy_B 241 GASS 244 (256)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 9654
No 317
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.68 E-value=5.1e-16 Score=166.98 Aligned_cols=172 Identities=20% Similarity=0.317 Sum_probs=123.3
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCC--CCeEEEEecCCc--e-----------------------eec-----CCCcEEE
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDSD--K-----------------------VVG-----NSPNLTL 595 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~~--~-----------------------~~~-----~~~~L~I 595 (1011)
...|..+.+.+|++++|.|.+.+.+ .+.+.|+|++.. . ... ...+|+|
T Consensus 30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 109 (282)
T 1qok_A 30 LQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQL 109 (282)
T ss_dssp EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred EECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEE
Confidence 3456678899999999999999886 689999996421 0 010 1257999
Q ss_pred eecCCCCCEEEEEEEEecCCC-----ceeeEEEEEEcCCC---------------eee-cCCceeeecCCcEEEEEEEEe
Q psy17146 596 LMTSDDLAGRYYCKASVMGFP-----EVGAEATVYLKGRP---------------TII-SHRTQFGIPGDTARVECSAFS 654 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~~-----~~s~~~~l~V~~~P---------------~i~-~~~~~~v~~G~~v~L~C~~~g 654 (1011)
.+++.+|+|.|+|.|.|. .+ .....+.|.|..+| .+. .+....+.+|++++|.|.+.+
T Consensus 110 ~~v~~~DsG~Y~C~~~n~-~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 188 (282)
T 1qok_A 110 SSLTSEDTAVYYCNEGTP-TGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASS 188 (282)
T ss_dssp CSCCGGGCEEEEEEEECS-SSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred CcCChhhCEEEEEEeccC-CCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecC
Confidence 999999999999999984 22 12244577776643 344 345677999999999999999
Q ss_pred cCCCCeEEEEE--CCeEecc----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe-EEEE
Q psy17146 655 IPPPEKVTWSY--RGEEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD-SVEI 721 (1011)
Q Consensus 655 ~p~p~~v~W~~--~g~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~-~~~~ 721 (1011)
.| + .+.|+| +|..+.. ....++.+.. .....+|+|.++..+|+|.|+|.|.|..+.. ....
T Consensus 189 ~~-~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt 262 (282)
T 1qok_A 189 SV-S-YMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSG----SGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGT 262 (282)
T ss_dssp CC-S-CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCE
T ss_pred CC-c-eEEEEEECCCCCcEEEEEEecCCCCcccCCeEEec----CCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCE
Confidence 99 7 899999 5654421 1234555432 2335789999999999999999999865422 2334
Q ss_pred EEEec
Q psy17146 722 MLKPQ 726 (1011)
Q Consensus 722 ~l~V~ 726 (1011)
.|.|.
T Consensus 263 ~l~V~ 267 (282)
T 1qok_A 263 KLELK 267 (282)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 55554
No 318
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.68 E-value=4.8e-16 Score=166.89 Aligned_cols=183 Identities=14% Similarity=0.218 Sum_probs=123.2
Q ss_pred ceeecCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCeecCCcc-------------cCCCCcceEEeecCCCceeEE
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALGPHR-------------NLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~~l~~~~-------------~~~~~~r~~i~~~~~~~~~~L 92 (1011)
.+.. |.++.+.+|++|+|.|.+.+ +...+.|+|......... .....+|+.+..+...+.++|
T Consensus 3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 81 (280)
T 3fku_X 3 QLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYM 81 (280)
T ss_dssp CEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEE
T ss_pred eEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEE
Confidence 3555 88999999999999999986 346899998542111000 011225888876666677899
Q ss_pred EEeecccCCCceEEEEEEeCC-----CCCcceeeeEEEEEEEc-C-----------CCCCeeecCCeeeecCCCcEEEEE
Q psy17146 93 EIYPVMLDDDARYQCQVSTGI-----LGEPAIRSRFATLTVLV-P-----------PDPPRIVQGDTLYTTEDREIELEC 155 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~-----~~~~~~~s~~~~l~V~~-~-----------p~~~~i~~~~~~~v~eg~~v~L~C 155 (1011)
+|.+++.+|+|.|.|.+.+.. ..........+.|.|.. + ..++.+...+.+.+.+|++++|.|
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~C 161 (280)
T 3fku_X 82 DLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTC 161 (280)
T ss_dssp EECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEEE
T ss_pred EECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEEE
Confidence 999999999999999998751 00112234456777765 1 124455555568899999999999
Q ss_pred EccCC-CC-CcEEEEEeCC--ceeee------------ceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 156 ISANG-KP-PAEITWIDGT--GTVMS------------NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 156 ~~~~g-~P-~~~i~W~k~~--~~l~~------------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
. +.+ .+ .+.+.|+|.. ..+.. ..++..... + ....|+|.+++.+|+|.|+|.+.+..
T Consensus 162 ~-~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~--~----~~~~L~I~~v~~~DsG~Y~C~~~~~~ 234 (280)
T 3fku_X 162 T-GNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRS--G----NTASLTITGLQPEDEADYYCSTWDSS 234 (280)
T ss_dssp E-CCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEE--T----TEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred E-ecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEcc--C----CEEEEEECCCCHHHCEEEEEEEecCC
Confidence 9 445 44 4789999832 22210 011111111 1 12469999999999999999999875
No 319
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.68 E-value=6e-17 Score=167.50 Aligned_cols=172 Identities=15% Similarity=0.164 Sum_probs=126.9
Q ss_pred CCceEEEcCCCcEEEEEEEec-CCCCe----EEEEecCCce-------------------ee--------cCCCcEEEee
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDG-NPAPE----ITWIHEDSDK-------------------VV--------GNSPNLTLLM 597 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g-~p~p~----v~W~k~~~~~-------------------~~--------~~~~~L~I~~ 597 (1011)
.|.++.+.+|++++|.|.+.+ .+.+. +.|+|++... .. ..+++|.|.+
T Consensus 5 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~ 84 (221)
T 3eow_R 5 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFG 84 (221)
T ss_dssp CCCCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCC
T ss_pred CCCcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEcc
Confidence 355677889999999999954 44444 9999986421 11 1356899999
Q ss_pred cCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecCCceeeecCCcE-EEEEEEE-ecCCCCeEEEEECCeEecccCC
Q psy17146 598 TSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTA-RVECSAF-SIPPPEKVTWSYRGEEIGVGSS 675 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v-~L~C~~~-g~p~p~~v~W~~~g~~l~~~~~ 675 (1011)
++.+|+|.|+|.+.|...+..+..+.|.|..+|.+..........|+.+ .|.|.+. |.|.| .|+|++++......
T Consensus 85 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~~~~~~~~~~g~~~~~l~C~~~~g~P~p-~v~W~k~~~~~~~~-- 161 (221)
T 3eow_R 85 LRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPA-QITWHSDLGGMPQT-- 161 (221)
T ss_dssp SSCCCCSCBEEEEEESSSCSCEEECCCCCCCCCEEEEEEECCCCCSSSCCEEEEEEESCSSCC-CEEEECSSSCCCCC--
T ss_pred CChHHCeEEEEEEEeCCCCceEEEEEEEEEECCCceeecCCcccCCceEEEEEEECCCccCCC-eeEEEeCCCCCCcc--
Confidence 9999999999999994446778888999999998873322222678888 4999988 88999 99999985543310
Q ss_pred CCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 676 DDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
... ...........+.|.|.++..+|.|.|+|.|.|..+.....+.|..
T Consensus 162 ~~~-~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~~~~~~v~~ 210 (221)
T 3eow_R 162 SQV-PGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSL 210 (221)
T ss_dssp EEE-CCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSSCEEEEECC
T ss_pred cee-ecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCCCeEEEEEE
Confidence 000 0000001123578999999999999999999999999888887765
No 320
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.68 E-value=1.8e-16 Score=156.08 Aligned_cols=153 Identities=20% Similarity=0.156 Sum_probs=109.9
Q ss_pred CceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCccc------CCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 35 QDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRN------LSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 35 ~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~------~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
+.+.+.+|++|+|.|.+..+.+.+.|+|++..+..... -...+|+.+. ....+|+|.+++.+|+|.|+|.
T Consensus 3 ~~v~~~~G~~VtL~c~~~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~----~~~~sL~I~~v~~~DsG~Y~C~ 78 (171)
T 1ccz_A 3 QQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLD----TVSGSLTIYNLTSSDEDEYEME 78 (171)
T ss_dssp EEEEEETTCCEEECCCCSSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEEC----TTTCCEEECSCCGGGCEEEEEE
T ss_pred cEEEEEcCCCEEEcCCCCCCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEe----CCCCeEEECCCChhhCceEEEE
Confidence 46789999999999999777779999999864421110 0112455552 1334899999999999999999
Q ss_pred EEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEeeecC
Q psy17146 109 VSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEEASVD 188 (1011)
Q Consensus 109 ~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~~~~~ 188 (1011)
+.+..+ +..+.|.|..++..|.+..... ...|.|. +.+.|.++++|+|++..+....
T Consensus 79 ~~n~~~------~~~~~L~V~~~~~~p~i~~~~~-------~~~L~C~-~~~~p~p~i~W~~~~~~l~~~~--------- 135 (171)
T 1ccz_A 79 SPNITD------TMKFFLYVLEMVSKPMIYWECS-------NATLTCE-VLEGTDVELKLYQGKEHLRSLR--------- 135 (171)
T ss_dssp CTTCCS------CEEEEEEEECCCCCCEEEEETT-------TTEEEEE-CSSCSSCEEEEEETTEEEEEES---------
T ss_pred EeCCCC------cEEEEEEEECcCCCCEEEEecC-------CcEEEEE-eCCCCCcEEEEEECCEECcCCc---------
Confidence 987532 5668899998877676642211 1379999 6677999999999887764321
Q ss_pred CceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 189 GRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 189 ~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
. ..|.+. ...|.|.|+|.|.|..+..
T Consensus 136 ~------~~l~~~--~~~~~g~Y~C~a~N~~~~~ 161 (171)
T 1ccz_A 136 Q------KTMSYQ--WTNLRAPFKCKAVNRVSQE 161 (171)
T ss_dssp S------SEEEEE--CSCCSSCEEEEEEETTEEE
T ss_pred c------eEEEEe--ccCCCceEEEEEEcccCcc
Confidence 1 123333 4788999999999998865
No 321
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.68 E-value=8.2e-16 Score=163.50 Aligned_cols=186 Identities=17% Similarity=0.255 Sum_probs=124.0
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCC-------CCeeEEeeCC--eecC----C--cccCCCCcceEEeecCCCceeE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDK-------TGVLQWTKDD--FALG----P--HRNLSGFDRYAMIGSDEEGDYS 91 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~-------~~~v~W~k~~--~~l~----~--~~~~~~~~r~~i~~~~~~~~~~ 91 (1011)
.+.+...|.++.+.+|++|+|.|.+.+. .+.+.|+|+. ..+. . .......+|+.+.. ..+.++
T Consensus 5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~ 82 (264)
T 2gjj_A 5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSG--SGTDFT 82 (264)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEE
T ss_pred ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEec--CCCEEE
Confidence 3667888999999999999999999874 4689999963 2110 0 00001236777754 245679
Q ss_pred EEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC-----------------CCeeecCCeeeecCCCcEEEE
Q psy17146 92 LEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD-----------------PPRIVQGDTLYTTEDREIELE 154 (1011)
Q Consensus 92 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~-----------------~~~i~~~~~~~v~eg~~v~L~ 154 (1011)
|+|.+++.+|+|.|+|.+.+... ......+.|+|..++. .+.+...+...+.+|+.++|.
T Consensus 83 L~I~~v~~~DsG~Y~C~~~~~~~---~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~ 159 (264)
T 2gjj_A 83 LTIGSVKAEDLAVYYCQQYSNYP---WTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKIS 159 (264)
T ss_dssp EEESSCCGGGCEEEEEEECSSSS---CEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEE
T ss_pred EEECCCCHHHCEEEEEEEecCCc---cEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEE
Confidence 99999999999999999987532 1233446788887642 233444555678999999999
Q ss_pred EEccCCCCC--cEEEEEeCC--cee--ee----c-eeEEEeeecCCceEE------EEEEEEEeeccCcCCcEEEEEEEe
Q psy17146 155 CISANGKPP--AEITWIDGT--GTV--MS----N-VRVTEEASVDGRRTT------VKSTLVLTPKKEHHNTTFTCQAQN 217 (1011)
Q Consensus 155 C~~~~g~P~--~~i~W~k~~--~~l--~~----~-~~~~~~~~~~~~~~~------~~~~L~I~~~~~~d~G~Y~C~a~n 217 (1011)
|. +.+.|. +.+.|+|+. ..+ +. . ..........+|... ...+|.|.+++.+|+|.|+|.|.|
T Consensus 160 C~-~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n 238 (264)
T 2gjj_A 160 CK-ASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSG 238 (264)
T ss_dssp EE-EESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EE-EeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEec
Confidence 99 556653 799999964 211 10 0 000000001122111 136899999999999999999998
Q ss_pred C
Q psy17146 218 T 218 (1011)
Q Consensus 218 ~ 218 (1011)
.
T Consensus 239 ~ 239 (264)
T 2gjj_A 239 N 239 (264)
T ss_dssp S
T ss_pred C
Confidence 5
No 322
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.67 E-value=7.4e-17 Score=164.12 Aligned_cols=148 Identities=17% Similarity=0.251 Sum_probs=109.2
Q ss_pred cccCCcEEEEEEeecCCCccEEEEEECCeecCCC-cCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEEE-----
Q psy17146 315 LVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAA-ASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDVT----- 388 (1011)
Q Consensus 315 v~~g~~v~l~C~~~~~p~~~~i~W~k~g~~l~~~-~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V~----- 388 (1011)
+.+|+.++|.|.+ |.+ .+.|+|+|..+... .....|.|.+++.+ |+|.|+|.+.+.. +..+.|.|.
T Consensus 15 ~~~G~~v~L~C~~---p~~-~i~W~k~g~~l~~~~~~~~~L~i~~v~~~-DsG~Y~C~~~~~~---s~~~~v~v~~~~~~ 86 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAK-NITWFKDGKMIGFLTEDKKKWNLGSNAKD-PRGMYQCKGSQNK---SKPLQVYYRMGSAD 86 (204)
T ss_dssp CCSSSEEEEEECS---CSS-EEEEEETTEEEEEEESSCCCEEEEEGGGC-CEEEEEEESSSSC---CCCEEEEEEC----
T ss_pred ecCCCeEEEEEcC---CCC-EEEEEECCEECCCCCCCCCeEEeCCCCcC-CCEEEEEEecCCC---CeeEEEEEEEeccc
Confidence 4689999999998 444 99999999998642 35678999999998 9999999975432 233455554
Q ss_pred ----------------------e----cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCcee--------ec
Q psy17146 389 ----------------------Y----GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV--------VG 434 (1011)
Q Consensus 389 ----------------------~----~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~--------~~ 434 (1011)
. ++.+...|. ....+|++++|.|. |.|.|.+.|+|++..+. ..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~ 163 (204)
T 1sy6_A 87 DAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY-KVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGS 163 (204)
T ss_dssp --------------------------------CCCC-EEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEE
T ss_pred cccccccccccccccccccccccccccccceecCCc-eeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEec
Confidence 0 122222222 22238999999999 78999999999985432 22
Q ss_pred cCCcEEEEee-ccCCCeEEEEEEEEcCCcceeeEEEEEEc
Q psy17146 435 NSPNLTLLMT-SDDLAGRYYCKASVMGFPEVGAEATVYLK 473 (1011)
Q Consensus 435 ~~~~L~I~~v-~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~ 473 (1011)
..+.|.|.++ +.+|+|.|+|.|.|..+...+..+.|.+.
T Consensus 164 ~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~ 203 (204)
T 1sy6_A 164 DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203 (204)
T ss_dssp ETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred CCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence 4678999999 99999999999999777656677766653
No 323
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.67 E-value=1.7e-16 Score=156.28 Aligned_cols=144 Identities=13% Similarity=0.141 Sum_probs=109.5
Q ss_pred ceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee------------------e-cCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 552 YSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV------------------V-GNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~------------------~-~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
+.+.+.+|++++|.|.+. .|.+.|.|+|++..+. . ..+++|+|.+++.+|+|.|+|.|.|
T Consensus 3 ~~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n 81 (171)
T 1ccz_A 3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81 (171)
T ss_dssp EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred cEEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence 356789999999999985 4889999999874321 1 2458999999999999999999998
Q ss_pred cCCCceeeEEEEEEcCC---CeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccc
Q psy17146 613 MGFPEVGAEATVYLKGR---PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI 689 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V~~~---P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~ 689 (1011)
. .+ +..+.|.|..+ |.+.... ...+|.|.+.+.|.| .++|+++|..+....
T Consensus 82 ~-~~--~~~~~L~V~~~~~~p~i~~~~-------~~~~L~C~~~~~p~p-~i~W~~~~~~l~~~~--------------- 135 (171)
T 1ccz_A 82 I-TD--TMKFFLYVLEMVSKPMIYWEC-------SNATLTCEVLEGTDV-ELKLYQGKEHLRSLR--------------- 135 (171)
T ss_dssp C-CS--CEEEEEEEECCCCCCEEEEET-------TTTEEEEECSSCSSC-EEEEEETTEEEEEES---------------
T ss_pred C-CC--cEEEEEEEECcCCCCEEEEec-------CCcEEEEEeCCCCCc-EEEEEECCEECcCCc---------------
Confidence 3 34 67788888765 3443211 113799999999999 999999999886311
Q ss_pred eeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 690 KSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 690 ~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
...|.+.+ ..|+|.|+|.|.|.+|..+..+.|.
T Consensus 136 ~~~l~~~~--~~~~g~Y~C~a~N~~~~~~~~~~l~ 168 (171)
T 1ccz_A 136 QKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVVN 168 (171)
T ss_dssp SSEEEEEC--SCCSSCEEEEEEETTEEEEEEECCC
T ss_pred ceEEEEec--cCCCceEEEEEEcccCcccceeEEe
Confidence 12344443 6789999999999999988777654
No 324
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.67 E-value=3.7e-16 Score=163.48 Aligned_cols=192 Identities=20% Similarity=0.289 Sum_probs=127.6
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCee--cC---C-c-----ccCCCCcceEEeecCCCceeEEEEeecc
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFA--LG---P-H-----RNLSGFDRYAMIGSDEEGDYSLEIYPVM 98 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~--l~---~-~-----~~~~~~~r~~i~~~~~~~~~~L~I~~v~ 98 (1011)
+...|..+.+.+|++|+|.|.+..+.+.+.|+|++.. +. . . ..-...+|+.+..+ ..+.++|+|.+++
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~v~ 80 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP-SQEQFSLILELAT 80 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC-SSSEEEEEESSCC
T ss_pred cccCCCeeEEeCCCcEEEEEEeCCCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec-CCCEEEEEEecCC
Confidence 4556889999999999999999777779999997521 10 0 0 00012368887654 2567899999999
Q ss_pred cCCCceEEEEEEeCCCC-CcceeeeEEEEEEEcC---CCCCeee--cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeC
Q psy17146 99 LDDDARYQCQVSTGILG-EPAIRSRFATLTVLVP---PDPPRIV--QGDTLYTTEDREIELECISANGKPPA-EITWIDG 171 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~-~~~~~s~~~~l~V~~~---p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~ 171 (1011)
.+|+|.|+|.+.+.... ........+.|+|... +.+|.+. .+....+.+|+.+.|.|.+.+..|.+ .+.|+|+
T Consensus 81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~ 160 (238)
T 1bec_A 81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN 160 (238)
T ss_dssp GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEET
T ss_pred cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEEC
Confidence 99999999999875210 0112233467888863 2344443 22334556899999999955445754 9999999
Q ss_pred CceeeeceeEEEe-eecCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCCCc
Q psy17146 172 TGTVMSNVRVTEE-ASVDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTADRT 222 (1011)
Q Consensus 172 ~~~l~~~~~~~~~-~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g~~ 222 (1011)
+..+..+...... .......+...+.|.|......| .|.|+|.|.|.....
T Consensus 161 g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~ 213 (238)
T 1bec_A 161 GKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSE 213 (238)
T ss_dssp TEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCT
T ss_pred CEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCC
Confidence 8887654432101 11122345556778887766554 688999999975443
No 325
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.67 E-value=4.9e-16 Score=160.56 Aligned_cols=187 Identities=17% Similarity=0.270 Sum_probs=128.6
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCCc---------------ccCCCCcceEEeecCCCceeEEE
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPH---------------RNLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~~---------------~~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
..|..+.+.+|++|+|.|.+.+. ...+.|+|........ ......+|+.+..+...+.++|+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 84 (221)
T 3m8o_H 5 VESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQ 84 (221)
T ss_dssp EEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEE
T ss_pred EccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEE
Confidence 34677899999999999999863 4589999854211000 00112368888876666788999
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEE-cCCCCCeee-cCCeeeecCCCcEEEEEEccCCCCC--cEEEEE
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVL-VPPDPPRIV-QGDTLYTTEDREIELECISANGKPP--AEITWI 169 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~-~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~--~~i~W~ 169 (1011)
|.+++.+|+|.|.|.+.+.... ......+.|.|. ..+.+|.+. ..+... .+|+.+.|.|.+..+.|. +.+.|+
T Consensus 85 I~~v~~~DsG~Y~C~~~~~~~~--~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~ 161 (221)
T 3m8o_H 85 MNSLKSDDTAMYYCVIRGDVYN--RQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWS 161 (221)
T ss_dssp ECSCCGGGCEEEEEEEESCTTC--CCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEES
T ss_pred ECCCCHHHCEEEEEEEECCChh--heECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEE
Confidence 9999999999999999875311 123344678887 334455554 222222 689999999995544786 599999
Q ss_pred eCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 170 DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 170 k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
|++..+...... .........+...+.|.|.+...+|+|.|+|.|.|..+..
T Consensus 162 ~~g~~~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~ 213 (221)
T 3m8o_H 162 ESGQGVTARNFP-PSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS 213 (221)
T ss_dssp CCSTTCEEEECC-CEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred ECCEECceEEcC-ceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence 998877432111 1110233355566789999999999999999999987643
No 326
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.67 E-value=6.9e-16 Score=164.06 Aligned_cols=167 Identities=15% Similarity=0.233 Sum_probs=120.9
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCC------CCeEEEEecC--Ccee------------------e---cCCCcEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNP------APEITWIHED--SDKV------------------V---GNSPNLT 594 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p------~p~v~W~k~~--~~~~------------------~---~~~~~L~ 594 (1011)
.+.+...|..+.+.+|++++|.|.+.+.+ .+.+.|+|+. .... . ....+|+
T Consensus 5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~ 84 (264)
T 2gjj_A 5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT 84 (264)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence 35566778889999999999999999988 6899999963 2110 0 1234899
Q ss_pred EeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC--------------------eeecCCceeeecCCcEEEEEEEEe
Q psy17146 595 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP--------------------TIISHRTQFGIPGDTARVECSAFS 654 (1011)
Q Consensus 595 I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P--------------------~i~~~~~~~v~~G~~v~L~C~~~g 654 (1011)
|.+++.+|+|.|.|.|.|.........+.|.|..+| .+..+....+.+|++++|.|.+.+
T Consensus 85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~ 164 (264)
T 2gjj_A 85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASG 164 (264)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEES
T ss_pred ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeC
Confidence 999999999999999998322123344678887653 233444557899999999999999
Q ss_pred cCC--CCeEEEEECC--eE---ecc---c---------CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 655 IPP--PEKVTWSYRG--EE---IGV---G---------SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 655 ~p~--p~~v~W~~~g--~~---l~~---~---------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
.|. + .+.|+|++ .. +.. . ...++.+..+ ......+|.|.+++.+|+|.|+|.|.|.
T Consensus 165 ~~~~~~-~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 165 YSFTGY-FINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVD--TSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp SCGGGS-EEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEE--TTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CccCCe-EEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEc--CCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 875 6 89999973 22 110 0 1244544321 1234679999999999999999999996
No 327
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.66 E-value=5.4e-16 Score=153.78 Aligned_cols=158 Identities=15% Similarity=0.228 Sum_probs=112.2
Q ss_pred CCceeEEecCcEEEEEEEcC---CCCeeEEee--CCeecCCccc----CCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 34 PQDQTAVVGSRVTLPCRVID---KTGVLQWTK--DDFALGPHRN----LSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k--~~~~l~~~~~----~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
++.+...+|++|+|.|.... +.+.|.|+| ++..+..... ....+|+.+..+ .+|+|.+++.+|+|.
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~n-----gsL~I~~v~~~DsG~ 80 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN-----GTLKIKHLKTDDQDI 80 (182)
T ss_dssp CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTT-----SCEEECSCCGGGCEE
T ss_pred ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCC-----CCEEECCCChhhCEE
Confidence 45688899999999995432 345899999 8766521110 123468877633 279999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcEEEEEeCCceeeeceeEEEe
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAEITWIDGTGTVMSNVRVTEE 184 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~i~W~k~~~~l~~~~~~~~~ 184 (1011)
|+|.+.+..+. ...+..+.|.|..+...|.+.. .+..+.|.|. +.+.|.+.|.|++++..+ .+
T Consensus 81 Y~c~~~n~~g~--~~~~~~~~L~V~~~~~~P~i~~-------~~~~v~L~C~-~~~~p~~~~~W~~~g~~l-~~------ 143 (182)
T 1hnf_A 81 YKVSIYDTKGK--NVLEKIFDLKIQERVSKPKISW-------TCINTTLTCE-VMNGTDPELNLYQDGKHL-KL------ 143 (182)
T ss_dssp EEEEEEETTSC--EEEEEEEEEEEECCCCCCEEEE-------ETTTTEEEEE-CSSCSSCEEEEEESSCEE-EE------
T ss_pred EEEEEEeCCCc--eeEEEEEEEEEcCcCCCCEEEE-------ccCcEEEEeE-ccCCCCCEEEEEECCEEC-CC------
Confidence 99999985432 2234567889988766665532 2447899999 777889999999998876 21
Q ss_pred eecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCce
Q psy17146 185 ASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRTY 223 (1011)
Q Consensus 185 ~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~~ 223 (1011)
... .|.+.. ..+|+|.|+|.|.|..+...
T Consensus 144 --~~~-------~i~~~~-~~~d~G~Y~C~a~N~~~~~~ 172 (182)
T 1hnf_A 144 --SQR-------VITHKW-TTSLSAKFKCTAGNKVSKES 172 (182)
T ss_dssp --ESS-------CEEEEC-CSCEEEEEEEEEECSSCEEE
T ss_pred --CCc-------EEEEec-ccCCCcEEEEEEEeCCCCcE
Confidence 011 233333 47899999999999988663
No 328
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.66 E-value=4.7e-17 Score=167.75 Aligned_cols=174 Identities=14% Similarity=0.186 Sum_probs=115.1
Q ss_pred ecceeecCCceEE--EcCCCcEEEEEEEecCC---C-CeEEEEecCCceee--------c------CCCcEEEeecCCCC
Q psy17146 543 YGPRFRARPYSVQ--VDRGAGVNLLCDVDGNP---A-PEITWIHEDSDKVV--------G------NSPNLTLLMTSDDL 602 (1011)
Q Consensus 543 ~~P~~~~~p~~~~--v~~G~~~~l~C~~~g~p---~-p~v~W~k~~~~~~~--------~------~~~~L~I~~v~~~d 602 (1011)
.+|.+...|.... +.+|++++|.|.+.|.+ . +.|+|+|++..+.. . ..+.|+|.+++.+|
T Consensus 8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 87 (218)
T 2rgs_A 8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS 87 (218)
T ss_dssp -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence 3455544444433 78999999999999873 3 79999999854321 0 12469999999999
Q ss_pred CEEEEEEEEecCCCc-eeeEEEE--EEcCCCeeec-CCceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeEecccCCCC
Q psy17146 603 AGRYYCKASVMGFPE-VGAEATV--YLKGRPTIIS-HRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDD 677 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~~~-~s~~~~l--~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~ 677 (1011)
+|.|+|.|.|..... ....+.+ .+..+|.+.. +.......|+.++|.|.+.| .|.+..|+|+|||..+.......
T Consensus 88 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~ 167 (218)
T 2rgs_A 88 GKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTA 167 (218)
T ss_dssp TCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECC
T ss_pred CCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecc
Confidence 999999999942222 2333322 5567887752 22222335999999999999 56656899999999875311111
Q ss_pred eEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 678 YSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 678 ~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
+....+ ......+.|.|.....+|.|.|+|.|.|.....
T Consensus 168 ~~~~~~-gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~ 206 (218)
T 2rgs_A 168 PVLDSD-GSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKN 206 (218)
T ss_dssp CEECTT-SCEEEEEEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred cEECCC-CCEEEEEEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence 111111 000123457777666667999999999988653
No 329
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.66 E-value=1e-16 Score=163.72 Aligned_cols=167 Identities=13% Similarity=0.144 Sum_probs=114.0
Q ss_pred ecCCceEE-EcCCCcEEEEEEEecCC---C-CeEEEEecCCceeec--------C------CCcEEEeecCCCCCEEEEE
Q psy17146 548 RARPYSVQ-VDRGAGVNLLCDVDGNP---A-PEITWIHEDSDKVVG--------N------SPNLTLLMTSDDLAGRYYC 608 (1011)
Q Consensus 548 ~~~p~~~~-v~~G~~~~l~C~~~g~p---~-p~v~W~k~~~~~~~~--------~------~~~L~I~~v~~~d~G~Y~C 608 (1011)
...|.... +.+|++++|.|.+.|.+ . ..|.|+|++..+... . ...|+|.+++.+|+|.|+|
T Consensus 6 ~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 85 (207)
T 2vol_A 6 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKC 85 (207)
T ss_dssp EECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEE
T ss_pred EeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEE
Confidence 34455444 78999999999999885 2 489999998543210 1 1469999999999999999
Q ss_pred EEEecCCCc--eeeEEEE--EEcCCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEec
Q psy17146 609 KASVMGFPE--VGAEATV--YLKGRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLE 682 (1011)
Q Consensus 609 ~a~n~~~~~--~s~~~~l--~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~ 682 (1011)
.|.|. .+. ....+.+ .+..+|.+.. +.......|+.++|.|.+.|. |.+..|+|+|||..+......++....
T Consensus 86 ~a~~~-~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~ 164 (207)
T 2vol_A 86 RVNSA-AFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDT 164 (207)
T ss_dssp EEECT-TCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECT
T ss_pred EEEcc-CCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECC
Confidence 99993 333 2334444 5567888762 222223469999999999995 554589999999987532111111111
Q ss_pred CCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 683 DPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 683 ~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
+ ......+.|.|.....+|.|.|+|.|.|....
T Consensus 165 ~-g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 165 D-GSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp T-SCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred C-CCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence 1 00112356778777777899999999998764
No 330
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.66 E-value=5e-16 Score=163.52 Aligned_cols=173 Identities=18% Similarity=0.260 Sum_probs=121.4
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEec----------------CC---------ceee----cCCCcEEEe
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHE----------------DS---------DKVV----GNSPNLTLL 596 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~----------------~~---------~~~~----~~~~~L~I~ 596 (1011)
.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|. +. +... ....+|+|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~ 82 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT 82 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence 456677889999999999999999999999999992 11 1111 123479999
Q ss_pred ecCCCCCEEEEEEEEecC---CCceeeEEEEEEcC------CCeee--cCCceeeecCCcEEEEEEEEecCC-CCeEEEE
Q psy17146 597 MTSDDLAGRYYCKASVMG---FPEVGAEATVYLKG------RPTII--SHRTQFGIPGDTARVECSAFSIPP-PEKVTWS 664 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~---~~~~s~~~~l~V~~------~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~ 664 (1011)
+++.+|+|.|+|.|.|.. .......+.|.|.. +|.+. .+....+..|+.++|.|.+.|.|+ +..++|+
T Consensus 83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~ 162 (246)
T 4dzb_B 83 SAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 162 (246)
T ss_dssp SCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEE
Confidence 999999999999999732 11233455677753 56654 334455677999999999999765 3479999
Q ss_pred ECCeEecccCCCCeEEecCC--cCcc---ceeEEEEcCCCCCC-CEEEEEEEEcCCCCeE
Q psy17146 665 YRGEEIGVGSSDDYSVLEDP--LKEG---IKSTLIIRESRHDH-FGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 665 ~~g~~l~~~~~~~~~~~~~~--~~~~---~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~~ 718 (1011)
|||..+.............. ..++ ..+.|.|.....+| .|.|+|.|.|......
T Consensus 163 k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 163 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 222 (246)
T ss_dssp ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred ECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence 99999864210000000000 0011 13569999988888 9999999999987654
No 331
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.66 E-value=4.1e-16 Score=165.99 Aligned_cols=187 Identities=17% Similarity=0.318 Sum_probs=124.3
Q ss_pred cCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCeecCCc------c-------cCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALGPH------R-------NLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~~l~~~------~-------~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
.|..+.+.+|++|+|+|.+.+ ....+.|+|....-... . .....+|+.+..+...+.++|+|.+
T Consensus 29 q~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 108 (267)
T 3u1s_H 29 QSGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRG 108 (267)
T ss_dssp ECCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECS
T ss_pred eeCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECC
Confidence 445688999999999999975 34589999854211000 0 1112368888877666888999999
Q ss_pred cccCCCceEEEEEEeC------CC-----------CC-cc---eeeeEEEEEEE-cCCCCCeee-cCCeeeecCCCcEEE
Q psy17146 97 VMLDDDARYQCQVSTG------IL-----------GE-PA---IRSRFATLTVL-VPPDPPRIV-QGDTLYTTEDREIEL 153 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~------~~-----------~~-~~---~~s~~~~l~V~-~~p~~~~i~-~~~~~~v~eg~~v~L 153 (1011)
++.+|+|.|.|.+.+. .. .. .. .....+.|+|. ..+.+|.+. ..+...+.+|+.+.|
T Consensus 109 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l 188 (267)
T 3u1s_H 109 LTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAAL 188 (267)
T ss_dssp CCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEE
T ss_pred CChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEE
Confidence 9999999999999620 00 00 00 12334677776 444556555 233334457999999
Q ss_pred EEEccCCCC-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 154 ECISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 154 ~C~~~~g~P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.|.+...+| .+.++| ++..+..+.............+...+.|.|.+...+| |.|+|.+.|..+..
T Consensus 189 ~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~ 255 (267)
T 3u1s_H 189 GCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 255 (267)
T ss_dssp EEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTE
T ss_pred EEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCc
Confidence 999666677 678999 5555433222211122233466677899999998889 99999999987654
No 332
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.66 E-value=8.7e-16 Score=161.52 Aligned_cols=172 Identities=19% Similarity=0.270 Sum_probs=119.7
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc----------------------ee----ecCCCcEEEeecCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----------------------KV----VGNSPNLTLLMTSD 600 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~----------------------~~----~~~~~~L~I~~v~~ 600 (1011)
+...|..+.+.+|++++|.|.+.+.+.+.+.|+|.... .. .....+|+|.+++.
T Consensus 4 v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~ 83 (245)
T 3nfj_J 4 IHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLLL 83 (245)
T ss_dssp EEEECSEEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEETTEEEEEESSCCG
T ss_pred eeCCCceEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecCCCEEEEEECCCCh
Confidence 44567788999999999999999999999999993211 00 11234799999999
Q ss_pred CCCEEEEEEEEe-----cCCCceeeEEEEEEcC------CCeee--cCCceeeecCCcEEEEEEEEec-CCCCeEEEEEC
Q psy17146 601 DLAGRYYCKASV-----MGFPEVGAEATVYLKG------RPTII--SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYR 666 (1011)
Q Consensus 601 ~d~G~Y~C~a~n-----~~~~~~s~~~~l~V~~------~P~i~--~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~ 666 (1011)
+|+|.|+|.|.| .........+.|.|.. +|.+. .+....+..|+.++|.|.+.|. |.+..++|++|
T Consensus 84 ~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~ 163 (245)
T 3nfj_J 84 SDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVN 163 (245)
T ss_dssp GGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred hhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEEEEC
Confidence 999999999998 1122334455777765 66654 2333445669999999999996 44547899999
Q ss_pred CeEecccCCCCeE-EecC-CcCcc---ceeEEEEcCCCCCC-CEEEEEEEEcCCCCeE
Q psy17146 667 GEEIGVGSSDDYS-VLED-PLKEG---IKSTLIIRESRHDH-FGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 667 g~~l~~~~~~~~~-~~~~-~~~~~---~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~~ 718 (1011)
|..+......... .... ...++ ..+.|.|.....+| .|.|+|.|.|......
T Consensus 164 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~~~~ 221 (245)
T 3nfj_J 164 GKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp TEEECTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCSS
T ss_pred CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCCCCc
Confidence 9998642100000 0000 00011 23688999888888 6699999999987654
No 333
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.66 E-value=7.6e-16 Score=152.74 Aligned_cols=148 Identities=12% Similarity=0.128 Sum_probs=110.5
Q ss_pred CceEEEcCCCcEEEEEEEe--cCCCCeEEEEe--cCCce----------------eecCCCcEEEeecCCCCCEEEEEEE
Q psy17146 551 PYSVQVDRGAGVNLLCDVD--GNPAPEITWIH--EDSDK----------------VVGNSPNLTLLMTSDDLAGRYYCKA 610 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~--g~p~p~v~W~k--~~~~~----------------~~~~~~~L~I~~v~~~d~G~Y~C~a 610 (1011)
.+.+...+|++++|.|... +.+.+.|.|+| ++..+ ....+++|+|.+++.+|+|.|+|.|
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~ 85 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI 85 (182)
T ss_dssp CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence 3457789999999999542 35567999999 76433 2335679999999999999999999
Q ss_pred EecCCCc--eeeEEEEEEcCC---CeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc
Q psy17146 611 SVMGFPE--VGAEATVYLKGR---PTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL 685 (1011)
Q Consensus 611 ~n~~~~~--~s~~~~l~V~~~---P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~ 685 (1011)
.|. .+. ....+.|.|.++ |.|.. .+..++|+|.+.+.|.| .|.|+++|..+. ..
T Consensus 86 ~n~-~g~~~~~~~~~L~V~~~~~~P~i~~-------~~~~v~L~C~~~~~p~~-~~~W~~~g~~l~-~~----------- 144 (182)
T 1hnf_A 86 YDT-KGKNVLEKIFDLKIQERVSKPKISW-------TCINTTLTCEVMNGTDP-ELNLYQDGKHLK-LS----------- 144 (182)
T ss_dssp EET-TSCEEEEEEEEEEEECCCCCCEEEE-------ETTTTEEEEECSSCSSC-EEEEEESSCEEE-EE-----------
T ss_pred EeC-CCceeEEEEEEEEEcCcCCCCEEEE-------ccCcEEEEeEccCCCCC-EEEEEECCEECC-CC-----------
Confidence 993 333 345677888653 44432 23478999999999988 999999999882 10
Q ss_pred CccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 686 KEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 686 ~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
...|.+.. ..+|+|.|+|.|.|.+|..+....+.
T Consensus 145 ----~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~ 178 (182)
T 1hnf_A 145 ----QRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPVS 178 (182)
T ss_dssp ----SSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred ----CcEEEEec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence 12333333 47899999999999999888776653
No 334
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.66 E-value=1e-15 Score=157.28 Aligned_cols=183 Identities=17% Similarity=0.194 Sum_probs=121.1
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecC--Cc--------ccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALG--PH--------RNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~--~~--------~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.|..+.+.+|++|+|.|.+.+. .+.+.|+|+.. .+. .+ ......+|+.+..+...+.++|+|.++
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (215)
T 1c5d_H 6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL 85 (215)
T ss_dssp EECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred cCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence 4678899999999999999863 46899998742 110 00 001123688887765567789999999
Q ss_pred ccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCCce
Q psy17146 98 MLDDDARYQCQVSTGILGEPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGTGT 174 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~~~ 174 (1011)
+.+|+|.|.|.+.+..... ......+.|+|.. .+.+|.+. ..+...+.+|+.+.|.|.+.+.+|.+ .++|+|++..
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~-~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~ 164 (215)
T 1c5d_H 86 QTEDTAIYFCTREDGWNYF-DYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALS 164 (215)
T ss_dssp CGGGCEEEEEEECCSSSCS-CCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTC
T ss_pred CcccCEEEEEEEecCCccc-ceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCcc
Confidence 9999999999998753111 1123346788874 33445443 23233457899999999955445887 9999998865
Q ss_pred eeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 175 VMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+...... ....+ ..+...+.|. ....+| |.|+|.|.|..+..
T Consensus 165 ~~~~~~~--~~~~~-g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~ 206 (215)
T 1c5d_H 165 SDVHTFP--AVLQS-GLYTLTSSVT--SSTWPS-QTVTCNVAHPASST 206 (215)
T ss_dssp CSCCBCC--CEEET-TEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTE
T ss_pred CceEecC--cccCC-CCEEEEEEEe--cccCCC-CeEEEEEEeCCCCc
Confidence 4211110 01112 3444445566 444456 99999999998865
No 335
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.66 E-value=1.4e-15 Score=156.89 Aligned_cols=166 Identities=17% Similarity=0.247 Sum_probs=116.4
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--ce-----------------------eec-----CCCcEEEeec
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--DK-----------------------VVG-----NSPNLTLLMT 598 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~~-----------------------~~~-----~~~~L~I~~v 598 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|... .. ... ...+|+|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (220)
T 2fbj_H 7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV 86 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence 4467899999999999999876 67999998631 10 000 1247999999
Q ss_pred CCCCCEEEEEEEEecCCC--ceeeEEEEEEcC----CCeeecCCceeeecCCcEEEEEEEEec-CC-CCeEEEEECCeEe
Q psy17146 599 SDDLAGRYYCKASVMGFP--EVGAEATVYLKG----RPTIISHRTQFGIPGDTARVECSAFSI-PP-PEKVTWSYRGEEI 670 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~~--~~s~~~~l~V~~----~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~-p~~v~W~~~g~~l 670 (1011)
+.+|+|.|.|.+.|.... .....+.|.|.. +|.|.......+..|+.++|.|.+.+. |. +..|+|+++|..+
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~ 166 (220)
T 2fbj_H 87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDI 166 (220)
T ss_dssp CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSC
T ss_pred ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEecCCEec
Confidence 999999999999983211 123446788864 466653334456789999999999988 76 2399999999875
Q ss_pred cccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 671 GVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
..... ......+ ......+.|.|......|.|.|+|.|.|..|...
T Consensus 167 ~~~~~-~~~~~~~-g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 167 TTVNF-PPALASG-GRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp EEEEC-CCEECSS-SCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred ceEec-CceECCC-CCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 31111 1111110 0001235799999999999999999999999754
No 336
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.65 E-value=7.3e-16 Score=163.17 Aligned_cols=187 Identities=17% Similarity=0.228 Sum_probs=125.3
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecCC----c---c----cCCCCcceEEeecCCCceeEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALGP----H---R----NLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~~----~---~----~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
....|..+.+.+|++|+|.|.+.+. .+.+.|+|+.. .+.. . . .....+|+.+..+...+.++|+
T Consensus 9 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 88 (261)
T 2xqy_G 9 QLQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQ 88 (261)
T ss_dssp EEECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred eEECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEE
Confidence 3445788999999999999999863 46899998742 1100 0 0 0012368888765445678999
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEe
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWID 170 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k 170 (1011)
|.+++.+|+|.|.|.+.+.... .......+.|+|.. .+.+|.+. ..+...+.+|+.+.|.|.+...+|.+ .+.|+|
T Consensus 89 I~~v~~~DsG~Y~C~~~~~~~~-~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k 167 (261)
T 2xqy_G 89 LSSLTSEDSAVYYCGRLGYVYG-FDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS 167 (261)
T ss_dssp ECSCCGGGCEEEEEEEECTTSS-EEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred EcCCCcccCeEEEEEEecCCCc-ceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEec
Confidence 9999999999999999875211 11223446788875 23344443 23333456899999999955446876 999999
Q ss_pred CCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 171 GTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
++..+....... .... ..+...+.|.|.+...+| |.|+|.|.|....
T Consensus 168 ~g~~~~~~~~~~--~~~~-g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~ 214 (261)
T 2xqy_G 168 GSLSSGVHTFPA--VLQS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASS 214 (261)
T ss_dssp GTCCTTEEECCC--EEET-TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred CCCcCceEecCc--eecC-CcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence 887642211100 1112 355566899999988888 9999999997654
No 337
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.65 E-value=9.5e-16 Score=152.28 Aligned_cols=145 Identities=16% Similarity=0.177 Sum_probs=109.5
Q ss_pred CceEEEcCCCcEEEEEEEec-CCCCeEEEEecC-Cc--------------------eee-cCCCcEEEeecCCCCCEEEE
Q psy17146 551 PYSVQVDRGAGVNLLCDVDG-NPAPEITWIHED-SD--------------------KVV-GNSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g-~p~p~v~W~k~~-~~--------------------~~~-~~~~~L~I~~v~~~d~G~Y~ 607 (1011)
...+.+.+|++++|.|.+.+ .+.+.|.|+|.+ .. ... ..+++|+|.+++.+|+|.|+
T Consensus 6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~ 85 (180)
T 2dru_A 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYY 85 (180)
T ss_dssp CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEE
T ss_pred cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEE
Confidence 34678999999999999854 347899999942 11 112 34578999999999999999
Q ss_pred EEEEecCCCceeeEEEEEEcCC---CeeecCCceeeecCCcEEEEEEE-EecCCCCeEEEEECCeEecccCCCCeEEecC
Q psy17146 608 CKASVMGFPEVGAEATVYLKGR---PTIISHRTQFGIPGDTARVECSA-FSIPPPEKVTWSYRGEEIGVGSSDDYSVLED 683 (1011)
Q Consensus 608 C~a~n~~~~~~s~~~~l~V~~~---P~i~~~~~~~v~~G~~v~L~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~ 683 (1011)
|.+.+. . .....+.|.|..+ |.+. ..+..++|.|.+ .| |.| .|.|+++|..+.. .
T Consensus 86 C~v~~~-~-~~~~~~~L~V~~~~~~P~i~-------~~~~~v~L~C~~~~g-p~p-~i~W~~~~~~l~~-------~--- 144 (180)
T 2dru_A 86 MRMLHE-T-EDQWKITMEVYEMVSKPMIY-------WECSNATLTCEVLEG-TDV-ELKLYQGKEHLRS-------L--- 144 (180)
T ss_dssp EEEESS-S-EEEEEEEEEEECCCCCCEEE-------EEGGGTEEEEECSSC-TTC-EEEEEETTEEEEE-------E---
T ss_pred EEEEcC-C-eEEEEEEEEEECCCCCCEEE-------ecCCCEEEEEEeCCC-CCC-EEEEEECCeECcC-------C---
Confidence 999873 3 6677788888765 3332 234679999999 55 888 9999999998751 0
Q ss_pred CcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 684 PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 684 ~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
...+|.+.. .+|+|.|+|.|.|.+|..+....+
T Consensus 145 -----~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 145 -----RQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp -----SSSEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred -----CCCEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence 024566633 789999999999999988776644
No 338
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.65 E-value=2.2e-15 Score=155.85 Aligned_cols=169 Identities=20% Similarity=0.332 Sum_probs=117.5
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--ce-----------------------eec-----CCCcEEEeec
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--DK-----------------------VVG-----NSPNLTLLMT 598 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~~-----------------------~~~-----~~~~L~I~~v 598 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|+.. .. ... ...+|+|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (223)
T 1dee_B 7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL 86 (223)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence 3467899999999999999876 47899998641 11 000 1247999999
Q ss_pred CCCCCEEEEEEEEecCC---C--ceeeEEEEEEcC----CCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEE-C
Q psy17146 599 SDDLAGRYYCKASVMGF---P--EVGAEATVYLKG----RPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSY-R 666 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~---~--~~s~~~~l~V~~----~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~-~ 666 (1011)
+.+|+|.|.|.+.|... . .....+.|.|.. +|.|.. .+...+..|+.++|.|.+.|. |.|..|+|++ |
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 166 (223)
T 1dee_B 87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKN 166 (223)
T ss_dssp CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccC
Confidence 99999999999998321 1 122345788863 566652 223346789999999999988 7666899999 9
Q ss_pred CeEecccCCCCeEEecCCcCccceeEEEEcCCCC--CCCEEEEEEEEcCCCCeEEEE
Q psy17146 667 GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH--DHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 667 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~--~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
|..+....... ....+ ......+.|.|..... +|.|.|+|.|.|..|.....+
T Consensus 167 g~~l~~~~~~~-~~~~~-~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 167 NSDISSTRGFP-SVLRG-GKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV 221 (223)
T ss_dssp SCBCSCEEECC-CEEET-TEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred CCccceeEECC-ccccC-CeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence 98875200000 00000 0011246799988876 789999999999999877655
No 339
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.65 E-value=5.3e-16 Score=160.77 Aligned_cols=168 Identities=19% Similarity=0.283 Sum_probs=115.5
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecC--Cce-----------------------ee-----cCCCcEEEeec
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHED--SDK-----------------------VV-----GNSPNLTLLMT 598 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~--~~~-----------------------~~-----~~~~~L~I~~v 598 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|+. ... .. ....+|+|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (225)
T 1op3_H 7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM 86 (225)
T ss_dssp ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence 4467899999999999999887 7899999864 111 00 11357999999
Q ss_pred CCCCCEEEEEEEEecCC-----C--ceeeEEEEEEcC----CCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEEEE
Q psy17146 599 SDDLAGRYYCKASVMGF-----P--EVGAEATVYLKG----RPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSY 665 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~-----~--~~s~~~~l~V~~----~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~ 665 (1011)
+.+|+|.|.|.+.|... . .....+.|.|.. +|.+. ..+...+..|+.++|.|.+.|. |.|..|+|++
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 166 (225)
T 1op3_H 87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNS 166 (225)
T ss_dssp CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCT
T ss_pred ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEec
Confidence 99999999999998321 1 122345777764 46554 2222236789999999999987 7666899999
Q ss_pred CCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEE
Q psy17146 666 RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEI 721 (1011)
Q Consensus 666 ~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~ 721 (1011)
+|..+........ ...+ ......+.|.|.++..+| |.|+|.|.|..+......
T Consensus 167 ~~~~~~~~~~~~~-~~~~-g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~ 219 (225)
T 1op3_H 167 GALTSGVHTFPAV-LQSS-GLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK 219 (225)
T ss_dssp TSCCTTCEECCCE-ECTT-SCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEEEEE
T ss_pred CCCcCCeEecCce-eCCC-CCEEEEEEEEEechhcCC-CcEEEEEEcCCCCccEEE
Confidence 9876421101110 1010 001124679999998888 999999999877654433
No 340
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.65 E-value=1.1e-15 Score=159.23 Aligned_cols=187 Identities=16% Similarity=0.216 Sum_probs=122.4
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCee--EEeeCCeecCC---------------cccCCCCcceEEeecCCCceeEE
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVL--QWTKDDFALGP---------------HRNLSGFDRYAMIGSDEEGDYSL 92 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v--~W~k~~~~l~~---------------~~~~~~~~r~~i~~~~~~~~~~L 92 (1011)
.|..+.+.+|++|+|.|.+.+. ...+ .|+|....... .......+|+.+..+...+.++|
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 85 (232)
T 3qhz_H 6 ESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVL 85 (232)
T ss_dssp EECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEE
T ss_pred cCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEE
Confidence 4566889999999999999762 2345 99985321100 00011236898887777788999
Q ss_pred EEeecccCCCceEEEEEEeCCCC----CcceeeeEEEEEEE-cCCCCCeee-cCCeeeecCCCcEEEEEEccCCCC-CcE
Q psy17146 93 EIYPVMLDDDARYQCQVSTGILG----EPAIRSRFATLTVL-VPPDPPRIV-QGDTLYTTEDREIELECISANGKP-PAE 165 (1011)
Q Consensus 93 ~I~~v~~~D~G~Y~C~~~~~~~~----~~~~~s~~~~l~V~-~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P-~~~ 165 (1011)
+|.+++.+|+|.|.|.+.+.... ........+.|+|. ..+.+|.+. ..+...+.+|+.+.|.|.+....| ...
T Consensus 86 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~ 165 (232)
T 3qhz_H 86 TMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT 165 (232)
T ss_dssp EECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCE
T ss_pred EECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeE
Confidence 99999999999999999864210 01223445678887 344556665 344445667999999999655566 457
Q ss_pred EEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 166 ITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 166 i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
+.|+|++..+...... ........+...+.|.|.+...+| |.|+|.|.|..+..
T Consensus 166 v~W~~~g~~~~~~~~~--~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~ 219 (232)
T 3qhz_H 166 VSWNSGALTSGVHTFP--AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 219 (232)
T ss_dssp EEEGGGTBCTTEEECC--CEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTE
T ss_pred EEEEECCEecceeecc--ceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCc
Confidence 8899988644221111 112223355666889999999999 99999999987755
No 341
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=163.23 Aligned_cols=168 Identities=14% Similarity=0.259 Sum_probs=118.2
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCC-----CCeEEEEecCCc--e------------------ee---cCCCcEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNP-----APEITWIHEDSD--K------------------VV---GNSPNLT 594 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p-----~p~v~W~k~~~~--~------------------~~---~~~~~L~ 594 (1011)
..+.+...|..+.+.+|++++|.|.+.+.+ .+.+.|+|+... . .. ....+|+
T Consensus 14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~ 93 (268)
T 1x9q_A 14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLK 93 (268)
T ss_dssp CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEE
Confidence 345667778888999999999999999887 589999986421 1 00 1234799
Q ss_pred EeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC------------------------eeecCCceeeecCCcEEEEE
Q psy17146 595 LLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP------------------------TIISHRTQFGIPGDTARVEC 650 (1011)
Q Consensus 595 I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P------------------------~i~~~~~~~v~~G~~v~L~C 650 (1011)
|.+++.+|+|.|+|.|.|.........+.|.|..++ .+..+....+.+|++++|.|
T Consensus 94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C 173 (268)
T 1x9q_A 94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSC 173 (268)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEE
T ss_pred ECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEE
Confidence 999999999999999998422123344566665432 12334566789999999999
Q ss_pred EEEecCC--CCeEEEEEC--CeEec-----------------ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEE
Q psy17146 651 SAFSIPP--PEKVTWSYR--GEEIG-----------------VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCS 709 (1011)
Q Consensus 651 ~~~g~p~--p~~v~W~~~--g~~l~-----------------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~ 709 (1011)
.+.+.|. + .+.|+|+ +..+. .....++.+..+. ......|.|.+++.+|+|.|+|.
T Consensus 174 ~~~~~~~~~~-~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~ 250 (268)
T 1x9q_A 174 VTSGFTFGHY-WMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDD--SKSSVYLQMNNLRVEDTGIYYCT 250 (268)
T ss_dssp EEESSCGGGC-EEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEG--GGTEEEEEECSCCGGGCEEEEEE
T ss_pred EecCcccccc-EEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeC--CCCEEEEEECCCCHHHCEEEEEE
Confidence 9998864 6 8999985 33221 0123456654321 12357899999999999999999
Q ss_pred EEcC
Q psy17146 710 VSNP 713 (1011)
Q Consensus 710 a~N~ 713 (1011)
|.|.
T Consensus 251 a~~~ 254 (268)
T 1x9q_A 251 GASY 254 (268)
T ss_dssp EEET
T ss_pred EccC
Confidence 9985
No 342
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=162.87 Aligned_cols=172 Identities=17% Similarity=0.271 Sum_probs=121.4
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC------------------------Cceeec----CCCcEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED------------------------SDKVVG----NSPNLTL 595 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~------------------------~~~~~~----~~~~L~I 595 (1011)
.+.+...|..+.+.+|++++|.|.+. .+.+.+.|+|.. .+.... .+.+|+|
T Consensus 26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (268)
T 3pl6_D 26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI 104 (268)
T ss_dssp -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence 45677788899999999999999987 678899999932 111111 1457999
Q ss_pred eecCCCCCEEEEEEEEec-CCCceeeEEEEEEcC------CCeee--cCCceeeecCCcEEEEEEEEecCC-CCeEEEEE
Q psy17146 596 LMTSDDLAGRYYCKASVM-GFPEVGAEATVYLKG------RPTII--SHRTQFGIPGDTARVECSAFSIPP-PEKVTWSY 665 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~-~~~~~s~~~~l~V~~------~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~ 665 (1011)
.+++.+|+|.|+|.+.|. ..........|.|.. +|.+. .+....+..|+.++|.|.+.|.++ +..++|++
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~ 184 (268)
T 3pl6_D 105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 184 (268)
T ss_dssp CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE
Confidence 999999999999999973 233344556677765 56654 344445667999999999999655 44799999
Q ss_pred CCeEecccCCCCeEE--ecC--CcCcc---ceeEEEEcCCCCCC-CEEEEEEEEcCCCCeE
Q psy17146 666 RGEEIGVGSSDDYSV--LED--PLKEG---IKSTLIIRESRHDH-FGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 666 ~g~~l~~~~~~~~~~--~~~--~~~~~---~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~~ 718 (1011)
||+.+.... +... ... ...++ ..+.|.|.....+| .|.|+|.|.|......
T Consensus 185 ~g~~l~~~~--~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~~ 243 (268)
T 3pl6_D 185 NGKEVHSGV--CTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 243 (268)
T ss_dssp SSSEECTTE--EECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred CCEECCCCe--EeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCCC
Confidence 999986321 1000 000 00011 23678888888787 9999999999876543
No 343
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}
Probab=99.64 E-value=6.2e-17 Score=194.31 Aligned_cols=285 Identities=15% Similarity=0.087 Sum_probs=187.4
Q ss_pred ecCCceEEEcCCCcEEEEEEEe-------cCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEec
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVD-------GNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVM 613 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~-------g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~ 613 (1011)
...|++..+..|++++|.|.+. +.+.+.|.|++++..+. ....+.|+|.++...|++ |+|.+...
T Consensus 7 ~i~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~l~i~~~~~~~~~-y~C~~~~~ 85 (589)
T 3l5h_A 7 YISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ-LTCNILTF 85 (589)
T ss_dssp CCSCSCCCCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCGGGCBCCSSSCCBCCCCCCCSSCCC-CCCC-CCT
T ss_pred EEecCCCEEeCCCCEEEEEEEeCccCccccccccceEEEeCCEECChHHccccCCcEeEEEEecCCCccee-eEEecccC
Confidence 3457788899999999999998 66778999999985432 233568999999988865 77888642
Q ss_pred C-CCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc-------
Q psy17146 614 G-FPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL------- 685 (1011)
Q Consensus 614 ~-~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~------- 685 (1011)
+ .......+.|.|..+| +....|.|...+.... .+.|......- ....|.+.....
T Consensus 86 ~~~~~~~~~~~l~v~~pP------------~~P~nl~c~~~~~~~~-~~~W~~~~~~~---~~~~y~l~~~~~~~~~~~c 149 (589)
T 3l5h_A 86 GQLEQNVYGITIISGLPP------------EKPKNLSCIVNEGKKM-RCEWDGGRETH---LETNFTLKSEWATHKFADC 149 (589)
T ss_dssp TCC-CCCCCCCCCC-CCC------------CCCEEEEEEEETTSCE-EEEEECCSCCS---SCEEEEECCBCSSSBCCCE
T ss_pred CCcccEEEeEEEeccCCC------------CCCEeeEEEECCCceE-EEEECCCCcCC---cCceEEEEEEEcCCCcccC
Confidence 2 2223344455555555 3556799988776554 88897743210 111222221000
Q ss_pred --CccceeEEEEc-CCCCCCCEEEEEEEEcCCCCe-EEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCC
Q psy17146 686 --KEGIKSTLIIR-ESRHDHFGVYNCSVSNPYGSD-SVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKK 761 (1011)
Q Consensus 686 --~~~~~~~L~I~-~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 761 (1011)
..+......|. ++.......|+|.|.|..|.. +..+.+.... ..++
T Consensus 150 ~~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~------------------------------~~~p 199 (589)
T 3l5h_A 150 KAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVY------------------------------KVKP 199 (589)
T ss_dssp ECBTTBSSCCBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECGGG------------------------------SEEC
T ss_pred CCCCCCcEEEEECCCCchheeEEEEEEEEeCCCCcccccEEEcccc------------------------------EEEc
Confidence 01112334444 566677788999999999975 2233332211 1244
Q ss_pred CCCCCCcc--cccccccccccc-cCCCCCCCCcCcceeeecCcc-----------------------cccccccc---c-
Q psy17146 762 PPPGNGIE--HHVTADGEKNQC-KESDNSSNISDIKLEFRTGSS-----------------------VSNVHLDY---A- 811 (1011)
Q Consensus 762 ~~p~~~~~--~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~-----------------------~p~~~Y~f---A- 811 (1011)
.||.++.+ ...+.+++.++| ++.+.+.+|.+|.|+++.... .|+++|.| |
T Consensus 200 ~pP~~~~~~~~~~~~~~v~l~W~~p~~~~~~~~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~ 279 (589)
T 3l5h_A 200 NPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCM 279 (589)
T ss_dssp CCCCSCEEECTTTCTTCEEEECCCCGGGGTSCEEEEEEEEETTCSCCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEE
T ss_pred CCCceEEEEecCCCCCeEEEEeCCCCCCCeeeEEEEEEECCCCCCCcEEEccccCcCceeEEEECCCCCCCEEEEEEEEE
Confidence 58899888 568889999999 666667799999999986432 78889999 4
Q ss_pred --CCCCCCC----cccccccccccccccccCCcccc-cccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 812 --GHDSETG----SESVHTRIGVPLAGPVPMDQRYH-RYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 812 --~G~g~~s----s~~~~t~~~~P~~~P~~~~~~~~-~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
.|.|.+| ...++|.+++|..+|..+..... ...+.+...++|+|+++...||.+.||+|+|+..+...
T Consensus 280 ~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~~~ 354 (589)
T 3l5h_A 280 KEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHL 354 (589)
T ss_dssp ESSSCSCCCCCCCCBCCCCCCCCCCSCCCEEEECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTSCC
T ss_pred eCCCCCccCCCCCccccccCccCCCCCCcEEEEeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCCCc
Confidence 6777765 33478999999988874321110 00123344569999999999999999999998766543
No 344
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=161.94 Aligned_cols=166 Identities=16% Similarity=0.241 Sum_probs=110.1
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC---Ccee---------------------------ecCCCcE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED---SDKV---------------------------VGNSPNL 593 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~---~~~~---------------------------~~~~~~L 593 (1011)
+|.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|.. .... .....+|
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM 81 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence 466777888999999999999999999999999999832 1100 1123469
Q ss_pred EEeecCCCCCEEEEEEEEecCCC---ceeeEEEEEEcCC-----------------Ceee-cCCceeeecCCcEEEEEEE
Q psy17146 594 TLLMTSDDLAGRYYCKASVMGFP---EVGAEATVYLKGR-----------------PTII-SHRTQFGIPGDTARVECSA 652 (1011)
Q Consensus 594 ~I~~v~~~d~G~Y~C~a~n~~~~---~~s~~~~l~V~~~-----------------P~i~-~~~~~~v~~G~~v~L~C~~ 652 (1011)
+|.+++.+|+|.|+|.|.|. .+ .....+.|.|..+ |.+. .+....+.+|++++|.|.+
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~-~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~ 160 (259)
T 3omz_A 82 ILRNLIENDSGVYYCATWDQ-NYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLY 160 (259)
T ss_dssp EESSCCGGGCEEEEEEEECT-TSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEE
T ss_pred EECCCCcccCEEEEEEEeeC-CccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEEC
Confidence 99999999999999999983 32 3445566777653 4555 4456789999999999999
Q ss_pred Eec-CCCCeEEEEECC--eEecc----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 653 FSI-PPPEKVTWSYRG--EEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 653 ~g~-p~p~~v~W~~~g--~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
.+. |.+ .+.|+|++ ..+.. ....++.+..+ .......|+|.+++.+|+|.|.|.|.+.
T Consensus 161 ~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 161 ETSWWSY-YIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFK--KAAKSVALTISALQLEDSAKYFCALGES 231 (259)
T ss_dssp ECCCSSC-EEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCB--GGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred CCccCCc-eEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEc--CcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence 886 667 99999853 11110 01245554421 1233567999999999999999999864
No 345
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.64 E-value=5.7e-16 Score=160.91 Aligned_cols=169 Identities=17% Similarity=0.271 Sum_probs=116.2
Q ss_pred CceEEEcCCCcEEEEEEEecCCC----CeEEEEecC--Cce----------------------eec-----CCCcEEEee
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNPA----PEITWIHED--SDK----------------------VVG-----NSPNLTLLM 597 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p~----p~v~W~k~~--~~~----------------------~~~-----~~~~L~I~~ 597 (1011)
|..+.+.+|++++|.|.+.+.+. +.+.|+|+. ... ... ...+|+|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS 86 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence 45678999999999999999875 899999863 110 000 125899999
Q ss_pred cCCCCCEEEEEEEEecCC------C--ceeeEEEEEEcC----CCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEE
Q psy17146 598 TSDDLAGRYYCKASVMGF------P--EVGAEATVYLKG----RPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTW 663 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~~------~--~~s~~~~l~V~~----~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W 663 (1011)
++.+|+|.|.|.+.|... . .....+.|.|.. +|.+. ..+...+..|+.++|.|.+.|. |.|+.|+|
T Consensus 87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W 166 (228)
T 3bae_H 87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW 166 (228)
T ss_dssp CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEE
T ss_pred CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEE
Confidence 999999999999998321 1 122346788863 56665 2333446789999999999987 77768999
Q ss_pred EECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 664 SYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 664 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
+++|..+.... ...+... ......+.|.|..+..+| |.|+|.|.|..|.......+
T Consensus 167 ~~~~~~~~~~~--~~~~~~~-~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~ 222 (228)
T 3bae_H 167 NSGSLSSGVHT--FPAVLQS-DLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI 222 (228)
T ss_dssp GGGTCCTTEEE--EEEEEET-TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred eeCCcccCceE--cCceeCC-CcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence 99987642110 0111110 001124679999988866 99999999999987665554
No 346
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.64 E-value=1.9e-15 Score=161.31 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=118.5
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCC------CCeeEEeeCCeecCCc--------ccCCCCcceEEeecCCCceeEEE
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDK------TGVLQWTKDDFALGPH--------RNLSGFDRYAMIGSDEEGDYSLE 93 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~------~~~v~W~k~~~~l~~~--------~~~~~~~r~~i~~~~~~~~~~L~ 93 (1011)
+.+...|.++.+.+|++|+|.|.+.+. .+.+.|+|+....... ......+|+.+.. ..+.++|+
T Consensus 16 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~ 93 (268)
T 1x9q_A 16 VVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSG--SGTDFTLK 93 (268)
T ss_dssp CCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEE
T ss_pred ceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEc--CCCEEEEE
Confidence 667888999999999999999999874 3689999864211000 0001236777654 23567999
Q ss_pred EeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCC------CC---------------eeecCCeeeecCCCcEE
Q psy17146 94 IYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPD------PP---------------RIVQGDTLYTTEDREIE 152 (1011)
Q Consensus 94 I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~------~~---------------~i~~~~~~~v~eg~~v~ 152 (1011)
|.+++.+|+|.|+|.+.+... ......+.|+|...+. +| .+..+....+.+|+.++
T Consensus 94 I~~v~~~DsG~Y~C~~~~~~~---~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~ 170 (268)
T 1x9q_A 94 INRVEAEDLGVYFCSQSTHVP---WTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMK 170 (268)
T ss_dssp ESSCCGGGCEEEEEEECSSSS---CEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEE
T ss_pred ECCCChhHCEEEEEEEecCCC---ceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEE
Confidence 999999999999999987532 1223346777776432 11 23334466789999999
Q ss_pred EEEEccCCCC--CcEEEEEeCC--ceeeeceeE---------EEeeecCCceEEE------EEEEEEeeccCcCCcEEEE
Q psy17146 153 LECISANGKP--PAEITWIDGT--GTVMSNVRV---------TEEASVDGRRTTV------KSTLVLTPKKEHHNTTFTC 213 (1011)
Q Consensus 153 L~C~~~~g~P--~~~i~W~k~~--~~l~~~~~~---------~~~~~~~~~~~~~------~~~L~I~~~~~~d~G~Y~C 213 (1011)
|.|. +.+.| .+.+.|+|+. ..+..-..+ .......++.... ..+|.|.+++.+|+|.|+|
T Consensus 171 L~C~-~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 249 (268)
T 1x9q_A 171 LSCV-TSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYC 249 (268)
T ss_dssp EEEE-EESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred EEEE-ecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEE
Confidence 9999 55655 3799999853 221100000 0000112232221 2579999999999999999
Q ss_pred EEEeC
Q psy17146 214 QAQNT 218 (1011)
Q Consensus 214 ~a~n~ 218 (1011)
.|.+.
T Consensus 250 ~a~~~ 254 (268)
T 1x9q_A 250 TGASY 254 (268)
T ss_dssp EEEET
T ss_pred EEccC
Confidence 99874
No 347
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.63 E-value=1.8e-15 Score=157.26 Aligned_cols=187 Identities=16% Similarity=0.269 Sum_probs=126.5
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecC------Cc-------ccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALG------PH-------RNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~------~~-------~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
.|..+.+.+|++|+|.|.+.+. ...+.|+|....-. .. ......+|+.+..+...+.++|+|.+
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (230)
T 3n9g_H 6 QSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSS 85 (230)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred ecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence 3557899999999999999752 34799998532110 00 00112368988887777889999999
Q ss_pred cccCCCceEEEEEEeCCC----CCcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCC-CcEEEEE
Q psy17146 97 VMLDDDARYQCQVSTGIL----GEPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKP-PAEITWI 169 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~----~~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P-~~~i~W~ 169 (1011)
++.+|+|.|.|.+.+... +........+.|+|.. ...+|.+. ..+...+.+|+.+.|.|.+....| .+.+.|
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W- 164 (230)
T 3n9g_H 86 LRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW- 164 (230)
T ss_dssp CCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE-
T ss_pred CChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE-
Confidence 999999999999987421 1111233456788863 33445554 234444568999999999655567 568999
Q ss_pred eCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 170 DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 170 k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++..+..+.............+...+.|.|.+...+| |.|+|.|.|..+..
T Consensus 165 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~ 215 (230)
T 3n9g_H 165 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 215 (230)
T ss_dssp -GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTE
T ss_pred -CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCc
Confidence 5554433222211122233456667899999999999 99999999987754
No 348
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.63 E-value=7e-16 Score=158.65 Aligned_cols=174 Identities=21% Similarity=0.269 Sum_probs=126.7
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec-----------CCCcEEEeecCCCCCEEEEEEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG-----------NSPNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~-----------~~~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
.+|.| ..|.++.+.+|+.+.|.|.+.|.|.|.+.|+|++..+... ..+.|.|.++..+|+|.|+|.|.
T Consensus 18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 96 (215)
T 3mtr_A 18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV 96 (215)
T ss_dssp EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence 56777 5777899999999999999999999999999998544322 24689999999999999999999
Q ss_pred ecCCCceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEe----cCCC-CeEEEEECCeEecccCCCCeEEecCCcC
Q psy17146 612 VMGFPEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFS----IPPP-EKVTWSYRGEEIGVGSSDDYSVLEDPLK 686 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g----~p~p-~~v~W~~~g~~l~~~~~~~~~~~~~~~~ 686 (1011)
| ..+..+..+.|.|..+|........ ...+..+.|.|.... .|.. ..+.|.+++..... ...+.+..
T Consensus 97 n-~~g~~~~~~~l~v~~~P~~p~~~~~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~--~~~~~~~~---- 168 (215)
T 3mtr_A 97 N-RIGQESLEFILVQADTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWH--SKWYDAKE---- 168 (215)
T ss_dssp C-SSCEEEEEEEEEECCCCCCCEEEEE-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCE--EEEEEHHH----
T ss_pred E-CCCceEEEEEEEECCCCCCCcceEE-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCccc--cccccccc----
Confidence 9 6778888999999887764322111 345678899997422 2222 14788887654210 00001100
Q ss_pred ccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 687 ~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
......|.|.++...|.|.|+|.|.|.+|....+..+.+
T Consensus 169 ~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v 207 (215)
T 3mtr_A 169 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 207 (215)
T ss_dssp HHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEE
T ss_pred ccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceee
Confidence 112268999999999999999999999997766555554
No 349
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.63 E-value=1.3e-15 Score=156.59 Aligned_cols=183 Identities=20% Similarity=0.269 Sum_probs=114.9
Q ss_pred ecCCceeEEecCcEEEEEEEcC---CCCeeEEeeCCeecCCc------------ccCCCCcceEEeecCCCceeEEEEee
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVID---KTGVLQWTKDDFALGPH------------RNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~---~~~~v~W~k~~~~l~~~------------~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
..|.++.+.+|++|+|.|.+.+ ....+.|+|........ ......+|+.+.. ..+.++|+|.+
T Consensus 4 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~ 81 (215)
T 3nl4_H 4 EESGGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISK--TSTTVDLKITS 81 (215)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEE--CSSEEEEEESS
T ss_pred EcCCCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEe--eCCEEEEEECC
Confidence 4577889999999999999975 24589999854211000 0011236887766 45778999999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEE-cCCCCCeee-cCCeeeecCCCcEEEEEEccCCCC-CcEEEEEeCCc
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVL-VPPDPPRIV-QGDTLYTTEDREIELECISANGKP-PAEITWIDGTG 173 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~-~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P-~~~i~W~k~~~ 173 (1011)
++.+|+|.|.|.+.+............+.|+|. ..+.+|.+. ..+...+.+|+.+.|.|.+....| ...+.|+|++.
T Consensus 82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~ 161 (215)
T 3nl4_H 82 PTTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTL 161 (215)
T ss_dssp CCGGGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEECCCTTCCC--CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CCcccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEecCCccccCCCcEEEEEEEeeeeCCCeEEEEeeCCE
Confidence 999999999999987532111123445678887 334455554 333445668999999999544445 45788999886
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+....... ....++ .+...+.|.| ...| |.|+|.|.|..+..
T Consensus 162 ~~~~~~~~~-~~~~~g-~~~~~s~l~v---~~~d-g~ytC~v~~~~~~~ 204 (215)
T 3nl4_H 162 TNGVRTFPS-VRQSSG-LYSLSSVVSV---TSSS-QPVTCNVAHPATNT 204 (215)
T ss_dssp CTTEEECCC-EECTTS-CEEEEEEEEE---CC----CCEEEEEEGGGTE
T ss_pred ECCeEecCc-eECCCC-CEEEEEEEEE---eccC-CEEEEEEEeCCCCc
Confidence 543221111 112223 3444455655 4456 99999999998765
No 350
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.63 E-value=3.4e-15 Score=158.30 Aligned_cols=169 Identities=15% Similarity=0.259 Sum_probs=121.5
Q ss_pred EEEeeCCcccccCCcEEEEEEeecCC-CccEEEEEECC--ee--cC----------------C--------CcCccEEEE
Q psy17146 306 QVSVIGSNRLVEGTDVRLYCKAEANP-SHMKYRWYIND--QP--VP----------------A--------AASATELYL 356 (1011)
Q Consensus 306 ~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~~i~W~k~g--~~--l~----------------~--------~~~~~~L~I 356 (1011)
.+....+..+.+|++++|.|.+.+.+ ....+.|+|.. .. +. . ......|.|
T Consensus 11 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 90 (257)
T 3gkz_A 11 QLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQL 90 (257)
T ss_dssp EEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred EEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEE
Confidence 34445677899999999999999854 23499999832 11 10 0 012237999
Q ss_pred eecccccCCcEEEEEEEcCCc----cceeeEEEEEEec--------------ceEeeCCCceEecCCCcEEEEeecCCCC
Q psy17146 357 TNITRHQHDSIVKCEVHNDVG----KSEDSETLDVTYG--------------PRFRARPYSVQVDRGAGVNLLCDVDGNP 418 (1011)
Q Consensus 357 ~~~~~~~d~G~Y~C~a~n~~g----~~~~s~~l~V~~~--------------P~~~~~p~~~~v~~G~~v~l~C~~~g~p 418 (1011)
.+++.+ |+|.|+|.|.|..+ .....+.|.|..+ |.+...+....+.+|++++|.|.+.+.|
T Consensus 91 ~~v~~~-DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~ 169 (257)
T 3gkz_A 91 KSVSSE-DTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSV 169 (257)
T ss_dssp CSCCGG-GCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCC
T ss_pred CCCChh-hCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCc
Confidence 999998 99999999999732 2235567888765 5677778888999999999999999988
Q ss_pred CC-ceEEEeCC--Ccee---------------------eccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEEEEEcC
Q psy17146 419 AP-EITWIHED--SDKV---------------------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKG 474 (1011)
Q Consensus 419 ~p-~v~W~k~~--~~~~---------------------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~ 474 (1011)
.+ .+.|+|.. .... ......|.|.+++.+|+|.|+|.|.|........-..|.|..
T Consensus 170 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~ 249 (257)
T 3gkz_A 170 SSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKR 249 (257)
T ss_dssp CGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred cceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEe
Confidence 87 99999953 2111 011234999999999999999999975544444555666654
Q ss_pred C
Q psy17146 475 R 475 (1011)
Q Consensus 475 ~ 475 (1011)
.
T Consensus 250 ~ 250 (257)
T 3gkz_A 250 A 250 (257)
T ss_dssp C
T ss_pred C
Confidence 3
No 351
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.63 E-value=7.2e-16 Score=162.48 Aligned_cols=187 Identities=14% Similarity=0.214 Sum_probs=112.0
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCee--cC----Cc-------ccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFA--LG----PH-------RNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~--l~----~~-------~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+|..+.+.+|++|+|.|.+.+. ...+.|+|.... +. .. ......+|+.+..+...+.++|+|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (257)
T 3bn9_D 6 QSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSS 85 (257)
T ss_dssp EECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECC
Confidence 4667899999999999999863 468999986421 10 00 00112368888776556788999999
Q ss_pred cccCCCceEEEEEEeCCCC---------CcceeeeEEEEEEEc-CCCCCeeec-CCeeeecCCCcEEEEEEccCCCCCc-
Q psy17146 97 VMLDDDARYQCQVSTGILG---------EPAIRSRFATLTVLV-PPDPPRIVQ-GDTLYTTEDREIELECISANGKPPA- 164 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~---------~~~~~s~~~~l~V~~-~p~~~~i~~-~~~~~v~eg~~v~L~C~~~~g~P~~- 164 (1011)
++.+|+|.|.|.+.+..+. ........+.|+|.. .+.+|.+.. .+...+.+|+.+.|.|.+.+.+|.+
T Consensus 86 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi 165 (257)
T 3bn9_D 86 LRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV 165 (257)
T ss_dssp CCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCC
T ss_pred CChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCc
Confidence 9999999999999875320 001223346788876 334455532 2233456899999999955456877
Q ss_pred EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 165 EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 165 ~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.++|+|++..+... ........++ .+...+.|.|.+...+| |.|+|.|.|.....
T Consensus 166 ~v~W~k~g~~~~~~-~~~~~~~~~g-~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~ 220 (257)
T 3bn9_D 166 TVSWNSGALTSGVH-TFPAVLQSSG-LYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 220 (257)
T ss_dssp EEEETTTTCCSSCE-ECCCEECTTS-CEEEEEECCCC--------CEEEEEEEGGGTE
T ss_pred EEEEeeCCCcCCcE-ecCCeEcCCC-CEEEEEEEEEcccccCC-CeEEEEEEecCCCc
Confidence 99999998763211 1100112233 44556889999988888 99999999975543
No 352
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.63 E-value=3.1e-15 Score=157.31 Aligned_cols=171 Identities=18% Similarity=0.232 Sum_probs=119.8
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC------------------------Cceee----cCCCcEEEe
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED------------------------SDKVV----GNSPNLTLL 596 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~------------------------~~~~~----~~~~~L~I~ 596 (1011)
+.+...|..+.+.+|++++|.| ..+.+.+.+.|+|.. .+... ....+|+|.
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~ 81 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ 81 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence 4566778889999999999999 778888999999821 11111 113489999
Q ss_pred ecCCCCCEEEEEEEEecC---CCceeeEEEEEEc------CCCeee--cCCceeeecCCcEEEEEEEEec-CCCCeEEEE
Q psy17146 597 MTSDDLAGRYYCKASVMG---FPEVGAEATVYLK------GRPTII--SHRTQFGIPGDTARVECSAFSI-PPPEKVTWS 664 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~---~~~~s~~~~l~V~------~~P~i~--~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~ 664 (1011)
+++.+|+|.|+|.+.+.. .......+.|.|. .+|.+. .+....+..|+.++|.|.+.|. |.+..+.|+
T Consensus 82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~ 161 (245)
T 4ei6_B 82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 161 (245)
T ss_dssp SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence 999999999999999621 2334455667776 366654 3344456679999999999995 445589999
Q ss_pred ECCeEecccCCCCeEEec--CCc--Ccc---ceeEEEEcCCCCCC-CEEEEEEEEcCCCCeE
Q psy17146 665 YRGEEIGVGSSDDYSVLE--DPL--KEG---IKSTLIIRESRHDH-FGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 665 ~~g~~l~~~~~~~~~~~~--~~~--~~~---~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~~ 718 (1011)
+||..+.... +..... ... .++ ..+.|.|.....+| .|.|+|.|.|......
T Consensus 162 ~~g~~l~~~~--~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~ 221 (245)
T 4ei6_B 162 VNGKEVHSGV--CTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp ETTEEECTTE--EECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred ECCEECCCCc--ccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence 9999986421 110000 000 011 23569999988888 9999999999876544
No 353
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=161.10 Aligned_cols=190 Identities=18% Similarity=0.240 Sum_probs=124.3
Q ss_pred eeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecC-----Cccc------CCCCc-ceEEeecCCCceeEEEEee
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALG-----PHRN------LSGFD-RYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~-----~~~~------~~~~~-r~~i~~~~~~~~~~L~I~~ 96 (1011)
+...|..+.+.+|++|+|.|.+.+ +...+.|+|...... .... ....+ |+.+..+... . |+|.+
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~-L~I~~ 80 (253)
T 3to4_D 4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDT--E-LRLQV 80 (253)
T ss_dssp CEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSS--C-CEEEE
T ss_pred EEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCC--e-EEEcc
Confidence 455678899999999999999876 556899998431110 0000 00112 7777654422 2 99999
Q ss_pred cccCCCceEEEEEEeCCCC--CcceeeeEEEEEEEcC---CCCCeee--cCCeeeecCCCcEEEEEEccCCCCCc-EEEE
Q psy17146 97 VMLDDDARYQCQVSTGILG--EPAIRSRFATLTVLVP---PDPPRIV--QGDTLYTTEDREIELECISANGKPPA-EITW 168 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~--~~~~~s~~~~l~V~~~---p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W 168 (1011)
++.+|+|.|+|.+.+...+ ........+.|+|... ..+|.+. .+....+.+|+.+.|.|.+.+..|.+ .++|
T Consensus 81 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W 160 (253)
T 3to4_D 81 ANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 160 (253)
T ss_dssp ESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEE
Confidence 9999999999999864321 1123344567888752 2334332 22233344678999999955557877 8999
Q ss_pred EeCCceeeeceeEEEeee-----cCCceEEEEEEEEEeeccCcC-CcEEEEEEEeCCCCc
Q psy17146 169 IDGTGTVMSNVRVTEEAS-----VDGRRTTVKSTLVLTPKKEHH-NTTFTCQAQNTADRT 222 (1011)
Q Consensus 169 ~k~~~~l~~~~~~~~~~~-----~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~n~~g~~ 222 (1011)
+|++..+..+........ .....+...+.|.|.+...+| .|.|+|.|.|.....
T Consensus 161 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~~ 220 (253)
T 3to4_D 161 WVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 220 (253)
T ss_dssp EETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred EECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCCC
Confidence 999888765443221111 023356666789999988888 789999999975443
No 354
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.63 E-value=8.9e-16 Score=157.87 Aligned_cols=170 Identities=18% Similarity=0.289 Sum_probs=110.1
Q ss_pred CCceEEEcCCCcEEEEEEEecC--CCCeEEEEecCC--cee-e------------------------cCCCcEEEeecCC
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDS--DKV-V------------------------GNSPNLTLLMTSD 600 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~--~~~-~------------------------~~~~~L~I~~v~~ 600 (1011)
.|..+.+.+|++++|.|.+.+. +.+.+.|+|... ... . ....+|+|.+++.
T Consensus 5 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 84 (215)
T 3nl4_H 5 ESGGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTSTTVDLKITSPTT 84 (215)
T ss_dssp EECCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECSSEEEEEESSCCG
T ss_pred cCCCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeCCEEEEEECCCCc
Confidence 3556789999999999999874 467999998532 111 0 1123599999999
Q ss_pred CCCEEEEEEEEecCC---CceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEecCC-CCeEEEEECCeEec
Q psy17146 601 DLAGRYYCKASVMGF---PEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGEEIG 671 (1011)
Q Consensus 601 ~d~G~Y~C~a~n~~~---~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~~l~ 671 (1011)
+|+|.|.|.+.|... ......+.|.|. .+|.+. .+....+..|+.++|.|.+.|.++ +..+.|+++|..+.
T Consensus 85 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~ 164 (215)
T 3nl4_H 85 EDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTNG 164 (215)
T ss_dssp GGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEECCCTTCCC--CEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred ccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEecCCccccCCCcEEEEEEEeeeeCCCeEEEEeeCCEECC
Confidence 999999999998321 114445667776 567665 344445678999999999999754 44688999997554
Q ss_pred ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 672 VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
....... ... ++.........+...| |.|+|.|.|..|.......|.+
T Consensus 165 ~~~~~~~-~~~----~g~~~~~s~l~v~~~d-g~ytC~v~~~~~~~~~~~~l~~ 212 (215)
T 3nl4_H 165 VRTFPSV-RQS----SGLYSLSSVVSVTSSS-QPVTCNVAHPATNTKVDKTVAP 212 (215)
T ss_dssp EEECCCE-ECT----TSCEEEEEEEEECC----CCEEEEEEGGGTEEEEEECCS
T ss_pred eEecCce-ECC----CCCEEEEEEEEEeccC-CEEEEEEEeCCCCcceEEecCC
Confidence 2111111 111 1211121113344556 9999999999998877777654
No 355
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.63 E-value=3e-14 Score=142.30 Aligned_cols=228 Identities=15% Similarity=0.228 Sum_probs=152.4
Q ss_pred eecCCCcEEEEEEccCCCC---CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 144 YTTEDREIELECISANGKP---PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 144 ~v~eg~~v~L~C~~~~g~P---~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
.+..|+.++|+|.+..|.| ...++|+||+..+.. .. ..|.|......|+|.|+|.+.+..|
T Consensus 13 ~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG----------aT------~tLti~s~t~sdSG~YqCvVTDa~G 76 (304)
T 3shs_A 13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN----------NT------ATLTVADATSENAGSYKVTVQDTDT 76 (304)
T ss_dssp SBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC----------CS------SEEEESSCCGGGCEEEEEEEEETTT
T ss_pred cccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC----------Cc------ceEEeeeccccCCeEEEEEEEECCC
Confidence 3567999999999888988 568999999865422 11 3799999999999999999999888
Q ss_pred CceeEEEEEEEEEeCCceEEEecCcceeecCceEEEEEEcccCCCccEEEEEeCCcccCCccccceEEEEeeecccCCcE
Q psy17146 221 RTYKVARLKLLVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPSHMKYRWYINDQPVPAAASATELYLTNITRHQHDSI 300 (1011)
Q Consensus 221 ~~~~s~~v~v~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~i~W~~~~~~l~~~~~~~~l~i~~~~~~~~~~~ 300 (1011)
....+..+.|.....+ .+....+.
T Consensus 77 cs~tSs~VtVT~~a~l--~i~it~P~------------------------------------------------------ 100 (304)
T 3shs_A 77 MTSVESEVFLMEEAEL--IVNITEPQ------------------------------------------------------ 100 (304)
T ss_dssp CCEEECCCEEECBCCE--EEEESSCS------------------------------------------------------
T ss_pred CeeeeeeEEEeccCce--eEEecCCC------------------------------------------------------
Confidence 7655554444432222 22221111
Q ss_pred EEEEEEEEeeCCcccccCCcEEEEEEe--ecC-CC----ccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEE
Q psy17146 301 VKCEVQVSVIGSNRLVEGTDVRLYCKA--EAN-PS----HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVH 373 (1011)
Q Consensus 301 ~~c~~~~~~~~~~~v~~g~~v~l~C~~--~~~-p~----~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~ 373 (1011)
+..+..|+.+.|.+.+ .+. ++ ..+|+|+||+..+.. ...|.+...... ++|.|+|++.
T Consensus 101 -----------s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg---Aq~lT~sS~Tat-eaG~YtV~VT 165 (304)
T 3shs_A 101 -----------HFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT---TQDITIQEFTAD-KNGVYTVKVW 165 (304)
T ss_dssp -----------EEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES---SSEEEECSCCGG-GCEEEEEEEE
T ss_pred -----------ceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC---ccccceeeEEec-CCeEEEEEEE
Confidence 1112334556666655 332 21 369999999998854 446777777776 9999999999
Q ss_pred cCCccc--eeeEEEEEEecceEeeCCCceEecCCCcEEEEeec--------CCCCCC--ceEEEeCCCce----------
Q psy17146 374 NDVGKS--EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDV--------DGNPAP--EITWIHEDSDK---------- 431 (1011)
Q Consensus 374 n~~g~~--~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~--------~g~p~p--~v~W~k~~~~~---------- 431 (1011)
|..+.. +.++.+.+...+.-........+..|+.+.|...+ +|.|.. ++.||......
T Consensus 166 n~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (304)
T 3shs_A 166 GESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEV 245 (304)
T ss_dssp SSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSS
T ss_pred cCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEEEEEEeecCccCchhhhhhh
Confidence 998754 44555555444443344556678889998887654 233332 57788654211
Q ss_pred -------eeccCCcEEEEeeccCCCeEEEEEEEE
Q psy17146 432 -------VVGNSPNLTLLMTSDDLAGRYYCKASV 458 (1011)
Q Consensus 432 -------~~~~~~~L~I~~v~~~d~G~Y~C~a~n 458 (1011)
.....+.|.-....-+|...|.|+|.-
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (304)
T 3shs_A 246 GEALEGFSITPDGHLFKESATYDDTAKFWCVAKL 279 (304)
T ss_dssp EECGGGEEECTTSCEEESSCCGGGCEEEEEEEEE
T ss_pred hhhhccceeCCCcceeecccccccchheeeHHHH
Confidence 123356677777888999999999973
No 356
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.63 E-value=1.9e-15 Score=159.66 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=128.9
Q ss_pred cceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCee--c---C---Cccc---CCCCcceEEeecCCCceeEEEEee
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFA--L---G---PHRN---LSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~--l---~---~~~~---~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
+.+...|..+.+.+|++|+|.|.+..+.+.+.|+|+... . . .... -...+|+.+..+. .+.++|+|.+
T Consensus 4 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~L~I~~ 82 (252)
T 1oga_E 4 GGITQSPKYLFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREK-KESFPLTVTS 82 (252)
T ss_dssp -CEECSCSEEEEETTCCEEECCEECSCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSS-TTBCCEEECS
T ss_pred ccceEcCCeEEEcCCCcEEEEEEeCCCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecC-CCEEEEEECc
Confidence 346777899999999999999999777779999986421 1 0 0000 0123688776542 4567899999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC---CCCCeee--cCCeeeecCCCcEEEEEEccCCCCC-cEEEEEe
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP---PDPPRIV--QGDTLYTTEDREIELECISANGKPP-AEITWID 170 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~---p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k 170 (1011)
++.+|+|.|+|.+.+.... .......+.|+|... +.+|.+. .+....+.+|+.+.|.|.+.+.+|. +.++|+|
T Consensus 83 v~~~D~G~Y~C~~~~~~~~-~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~ 161 (252)
T 1oga_E 83 AQKNPTAFYLCASSSRSSY-EQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 161 (252)
T ss_dssp CCSCCCEEEEEEEESSTTS-CCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CChhhCEEEEEEEecCCcc-ceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEE
Confidence 9999999999999874211 111223356888752 2344443 2223345579999999995544576 5999999
Q ss_pred CCceeeeceeEEEe-----eecCCceEEEEEEEEEeeccCc-CCcEEEEEEEeCCCCc
Q psy17146 171 GTGTVMSNVRVTEE-----ASVDGRRTTVKSTLVLTPKKEH-HNTTFTCQAQNTADRT 222 (1011)
Q Consensus 171 ~~~~l~~~~~~~~~-----~~~~~~~~~~~~~L~I~~~~~~-d~G~Y~C~a~n~~g~~ 222 (1011)
++..+..+...... .......+...+.|.|.+.... |.|.|+|.|.|.....
T Consensus 162 ~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~ 219 (252)
T 1oga_E 162 NGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 219 (252)
T ss_dssp TTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred CCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence 98877654332100 0112335666788999887664 6889999999986654
No 357
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.63 E-value=6.6e-16 Score=159.08 Aligned_cols=186 Identities=13% Similarity=0.195 Sum_probs=117.9
Q ss_pred eccceeecCCcee--EEecCcEEEEEEEcCC-----CCeeEEeeCCeecCCccc----CCCCcceEEeecCCCceeEEEE
Q psy17146 26 REQKFAMEPQDQT--AVVGSRVTLPCRVIDK-----TGVLQWTKDDFALGPHRN----LSGFDRYAMIGSDEEGDYSLEI 94 (1011)
Q Consensus 26 ~~p~~~~~p~~~~--v~~G~~v~L~C~v~~~-----~~~v~W~k~~~~l~~~~~----~~~~~r~~i~~~~~~~~~~L~I 94 (1011)
.+|.+.+.|.... +.+|++++|.|.+.+. .+.|.|+|++..+..... .....++. ...+|+|
T Consensus 8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~I 80 (218)
T 2rgs_A 8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIR-------VVSTLPI 80 (218)
T ss_dssp -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEE-------EEEEEEC
T ss_pred CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEE-------EEEEEEE
Confidence 3566666666555 8999999999999863 258999999976532110 00001111 2347999
Q ss_pred eecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeee-cCCeeeecCCCcEEEEEEccCCCCCc-EEEEEeCC
Q psy17146 95 YPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV-QGDTLYTTEDREIELECISANGKPPA-EITWIDGT 172 (1011)
Q Consensus 95 ~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~k~~ 172 (1011)
.+++.+|+|.|+|.+.+..... .....+.+ +.....+|.+. ..+.....+|+.+.|.|.+.+.+|.+ +++|+|++
T Consensus 81 ~~~~~~D~g~Y~C~~~~~~~~~--~~~~~v~~-~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g 157 (218)
T 2rgs_A 81 QHQDWMSGKEFKCKVNNKDLPS--PIERTISK-IKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNG 157 (218)
T ss_dssp CHHHHHTTCCEEEEEEETTCSS--CEEEEECC-CCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred cHHHcCCCCeEEEEEECCcCCC--cceEEEee-cCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECC
Confidence 9999999999999999864321 01111211 01122334432 22222223599999999944347875 99999999
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..+............++ .+...+.|.|.....+|.|.|+|.|.|.....
T Consensus 158 ~~~~~~~~~~~~~~~~g-t~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~ 206 (218)
T 2rgs_A 158 HTEENYKDTAPVLDSDG-SYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKN 206 (218)
T ss_dssp EEECCEEECCCEECTTS-CEEEEEEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred EeccCceecccEECCCC-CEEEEEEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence 87743222211122333 55666788888887788999999999987654
No 358
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.62 E-value=3.5e-15 Score=156.50 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=120.2
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecC--CCCeEEEEecCC--ce--e---------------------ec-----CCCc
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDS--DK--V---------------------VG-----NSPN 592 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~--~~--~---------------------~~-----~~~~ 592 (1011)
+.+...|..+.+.+|++++|.|.+.+. +.+.+.|+|+.. .. . .. ...+
T Consensus 2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 81 (242)
T 1hxm_B 2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST 81 (242)
T ss_dssp CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEE
Confidence 346667888999999999999999886 678999998531 11 0 00 1347
Q ss_pred EEEeecCCCCCEEEEEEEEecCCC------ceeeEEEEEEcC-------CCee--ecCCceeeecCCcEEEEEEEEec-C
Q psy17146 593 LTLLMTSDDLAGRYYCKASVMGFP------EVGAEATVYLKG-------RPTI--ISHRTQFGIPGDTARVECSAFSI-P 656 (1011)
Q Consensus 593 L~I~~v~~~d~G~Y~C~a~n~~~~------~~s~~~~l~V~~-------~P~i--~~~~~~~v~~G~~v~L~C~~~g~-p 656 (1011)
|+|.+++.+|+|.|.|.+.+...+ .....+.|.|.. +|.+ ..+....+..|+.++|.|.+.|. |
T Consensus 82 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P 161 (242)
T 1hxm_B 82 LTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFP 161 (242)
T ss_dssp EEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESS
T ss_pred EEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEEC
Confidence 999999999999999999984211 122345777765 2332 23334456679999999999987 6
Q ss_pred CCCeEEEEECCe-EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 657 PPEKVTWSYRGE-EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 657 ~p~~v~W~~~g~-~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.+..|+|+++|. .+......... ..+ ......+.|.|..... | |.|+|.|.|..+.......+.+
T Consensus 162 ~~~~v~W~~~~~~~l~~~~~~~~~-~~~-~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 162 DVIKIHWEEKKSNTILGSQEGNTM-KTN-DTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp CCEEEEEEESSSCCCCCCEECCCE-ECS-SSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred CCeEEEEEcCCCEeecCcccccee-cCC-CcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence 533899999987 55321111111 111 0011246899988775 5 9999999999997655455544
No 359
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.62 E-value=1.9e-15 Score=158.38 Aligned_cols=172 Identities=15% Similarity=0.211 Sum_probs=118.8
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC-----------------------ceee----cCCCcEEEee
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS-----------------------DKVV----GNSPNLTLLM 597 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~-----------------------~~~~----~~~~~L~I~~ 597 (1011)
+.+...|..+.+.+|++++|.|.+.+ +.+.+.|+|... +... ....+|+|.+
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~ 81 (240)
T 3q5y_A 3 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA 81 (240)
T ss_dssp CCCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECS
T ss_pred cccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECc
Confidence 34556678899999999999999976 788999999321 1111 1234799999
Q ss_pred cCCCCCEEEEEEEEe--cCCCceeeEEEEEEc------CCCeee--cCCceeeecCCcEEEEEEEEe-cCCCCeEEEEEC
Q psy17146 598 TSDDLAGRYYCKASV--MGFPEVGAEATVYLK------GRPTII--SHRTQFGIPGDTARVECSAFS-IPPPEKVTWSYR 666 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n--~~~~~~s~~~~l~V~------~~P~i~--~~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~ 666 (1011)
++.+|+|.|+|.+.+ .........+.|.|. .+|.+. .+....+..|+.++|.|.+.| .|.+..+.|++|
T Consensus 82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~ 161 (240)
T 3q5y_A 82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN 161 (240)
T ss_dssp CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred CChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEEC
Confidence 999999999999983 222334445566665 456655 234445667999999999999 555657999999
Q ss_pred CeEecccCCC--CeEEecCCcCccceeEEEEcCCCCCC-CEEEEEEEEcCCCCeE
Q psy17146 667 GEEIGVGSSD--DYSVLEDPLKEGIKSTLIIRESRHDH-FGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 667 g~~l~~~~~~--~~~~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~~ 718 (1011)
|+.+...... ......+ ......+.|.|.....+| .|.|+|.|.|......
T Consensus 162 g~~l~~~~~~~~~~~~~~~-g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~~ 215 (240)
T 3q5y_A 162 GKEVHSGVSTDPQAYKESN-YSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEE 215 (240)
T ss_dssp TEEECTTEEECSSCEEEET-TEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred CEECcCcEecCCceeeCCC-CCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCc
Confidence 9998632110 0011110 001123569999999888 6799999999876543
No 360
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.62 E-value=7.2e-16 Score=157.40 Aligned_cols=182 Identities=15% Similarity=0.237 Sum_probs=115.2
Q ss_pred eeecCCcee-EEecCcEEEEEEEcCC-----CCeeEEeeCCeecCCccc-CC---CCcceEEeecCCCceeEEEEeeccc
Q psy17146 30 FAMEPQDQT-AVVGSRVTLPCRVIDK-----TGVLQWTKDDFALGPHRN-LS---GFDRYAMIGSDEEGDYSLEIYPVML 99 (1011)
Q Consensus 30 ~~~~p~~~~-v~~G~~v~L~C~v~~~-----~~~v~W~k~~~~l~~~~~-~~---~~~r~~i~~~~~~~~~~L~I~~v~~ 99 (1011)
+...|.... +.+|++++|.|.+.+. ...+.|+|++..+..... .. ...++. ...+|+|.+++.
T Consensus 5 ~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~ 77 (207)
T 2vol_A 5 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFR-------SVSELPIMHQDW 77 (207)
T ss_dssp EEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEE-------EEEEEECCHHHH
T ss_pred EEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEE-------EEEEEEEehhHc
Confidence 444566555 8999999999999863 138999999976532110 00 011121 234799999999
Q ss_pred CCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeee-cCCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCCceeee
Q psy17146 100 DDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV-QGDTLYTTEDREIELECISANGKPP-AEITWIDGTGTVMS 177 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~ 177 (1011)
+|+|.|+|.+.+..... ..+..+.+.+ ....+|.+. ........+|+.+.|.|.+.+.+|+ ++++|+|++..+..
T Consensus 78 ~D~G~Y~C~a~~~~~~~--~~~~~v~~~~-~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~ 154 (207)
T 2vol_A 78 LNGKEFKCRVNSAAFPA--PIEKTISKTK-GRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAEN 154 (207)
T ss_dssp HTTCCEEEEEECTTCSS--CEEEEECCCC-CCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSC
T ss_pred CCCCEEEEEEEccCCCC--ceEEEeccCC-CCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccC
Confidence 99999999999864321 1112222211 112233332 2222222369999999995444666 49999999987644
Q ss_pred ceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 178 NVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..........++ .+...+.|.|.....+|.|.|+|.|.|.....
T Consensus 155 ~~~~~~~~~~~g-~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~~ 198 (207)
T 2vol_A 155 YKNTQPIMDTDG-SYFVYSKLNVQKSNWEAGNTFTCSVLHEGLHN 198 (207)
T ss_dssp EEECCCEECTTS-CEEEEEEEEEEHHHHSSCCEEEEEEECTTSGG
T ss_pred cccCCceECCCC-CEEEEEEEEECHHHcCCCCEEEEEEECCCCCC
Confidence 322111122333 55666789998888889999999999987644
No 361
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.62 E-value=9.4e-16 Score=160.42 Aligned_cols=187 Identities=17% Similarity=0.212 Sum_probs=125.0
Q ss_pred cCCceeEEecCcEEEEEEEcCC-----CCeeEEeeCCeecCC------c------------ccCCCCcceEEeecCCCce
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK-----TGVLQWTKDDFALGP------H------------RNLSGFDRYAMIGSDEEGD 89 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~-----~~~v~W~k~~~~l~~------~------------~~~~~~~r~~i~~~~~~~~ 89 (1011)
.|..+.+.+|++|+|.|.+.+. ...+.|+|....... . ......+|+.+..+...+.
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 85 (239)
T 3tv3_H 6 ESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNL 85 (239)
T ss_dssp EESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTE
T ss_pred cCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCE
Confidence 4677899999999999999863 337999985421100 0 0011236888877666678
Q ss_pred eEEEEeecccCCCceEEEEEEeCCCC---------CcceeeeEEEEEEE-cCCCCCeee-cCCeeeecCCCcEEEEEEcc
Q psy17146 90 YSLEIYPVMLDDDARYQCQVSTGILG---------EPAIRSRFATLTVL-VPPDPPRIV-QGDTLYTTEDREIELECISA 158 (1011)
Q Consensus 90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~---------~~~~~s~~~~l~V~-~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~ 158 (1011)
++|+|.+++.+|+|.|.|.+.+.... ........+.|+|. ..+.+|.+. ..+...+.+|+.+.|.|.+.
T Consensus 86 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~ 165 (239)
T 3tv3_H 86 VFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK 165 (239)
T ss_dssp EEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEE
T ss_pred EEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEe
Confidence 89999999999999999999764210 01122334567776 344455554 33444456799999999965
Q ss_pred CCCCCc-EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 159 NGKPPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 159 ~g~P~~-~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
...|.+ .+.|++++..+...... ........+...+.|.|.+...+| |.|+|.|.|..+..
T Consensus 166 ~~~p~~~~v~W~~~g~~~~~~~~~--~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~ 227 (239)
T 3tv3_H 166 DYFPEPVTVSWNSGALTSGVHTFP--AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 227 (239)
T ss_dssp EEBSSCCEEEEGGGTBCTTEEECC--CEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTE
T ss_pred eEeCCCeEEEEEECCccCceEecC--ceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCc
Confidence 556754 68999988654221111 112223356667889999999889 99999999987654
No 362
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Probab=99.62 E-value=2.8e-16 Score=171.98 Aligned_cols=201 Identities=12% Similarity=0.008 Sum_probs=139.4
Q ss_pred CceeeecCCcEEEEEEEEec-----CCCCeEEEEECCeEecccCCCCeEEecCCcCccc-eeEEEEcCCCCCCCEEEEEE
Q psy17146 636 RTQFGIPGDTARVECSAFSI-----PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGI-KSTLIIRESRHDHFGVYNCS 709 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~-----p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~-~~~L~I~~~~~~d~G~Y~C~ 709 (1011)
.+..+..|++++|.|.+.++ |.+ .|.|++||..+.. .++.... .+. .+.|+|.++...|+|.|+|.
T Consensus 8 ~~~~v~~G~~v~l~C~~~~~~~~~~~~~-~i~W~~~g~~l~~---~~~~~~~----~~~~~~~L~i~~~~~~d~g~y~c~ 79 (313)
T 2d9q_B 8 SAPIVHLGDPITASCIIKQNCSHLDPEP-QILWRLGAELQPG---GRQQRLS----DGTQESIITLPHLNHTQAFLSCSL 79 (313)
T ss_dssp SCSEECTTCCEEEEECCCTTSCSSCSCS-CCEEESSSCBCTT---CEECCCS----SSCCCEEEEESCCCSSEEEEEEEE
T ss_pred CCcEEcCCCCEEEEEEECCCCCCCCccc-ceEEEeCCEECCc---cceEEEe----cCeEEEEEEEeccCCCccceEEee
Confidence 45668899999999999997 567 8999999998752 2222111 222 37899999999999999999
Q ss_pred EEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCCCCCccccc-ccccccccc-cCCCCC
Q psy17146 710 VSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGIEHHV-TADGEKNQC-KESDNS 787 (1011)
Q Consensus 710 a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~-~~~s~~~~W-~~~d~~ 787 (1011)
|.|..+...+.+.|.|. ..|.+|.++..... ..+++.++| ++.|++
T Consensus 80 ~~~~~~~~~~~~~l~v~--------------------------------~~P~~P~~l~c~~~~~~~~~~~~W~~~~~~~ 127 (313)
T 2d9q_B 80 NWGNSLQILDQVELRAG--------------------------------YPPAIPHNLSCLMNLTTSSLICQWEPGPETH 127 (313)
T ss_dssp ESSSSEEEEEEEEEEEC--------------------------------CCCCCCEEEEEEEETTTTEEEEEEECCSCCS
T ss_pred ecCCCceeEEEEEEccC--------------------------------CCCCCCccceeeECCCCccEEEEecCCCCCC
Confidence 97765555556666652 23337888877666 467899999 777777
Q ss_pred CCCcCcceeeecCc----------------------------ccccccccc---c---CCCCCCCccccccccccccccc
Q psy17146 788 SNISDIKLEFRTGS----------------------------SVSNVHLDY---A---GHDSETGSESVHTRIGVPLAGP 833 (1011)
Q Consensus 788 s~I~~Y~ve~~~~~----------------------------~~p~~~Y~f---A---~G~g~~ss~~~~t~~~~P~~~P 833 (1011)
.++ .|+|+++... -.+|+.|.| | +|.+.++...+.+.+.++..+|
T Consensus 128 ~~~-~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP 206 (313)
T 2d9q_B 128 LPT-SFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPP 206 (313)
T ss_dssp SCC-EEEEEEEECCTTSCSCCCCEEEECCCTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCC
T ss_pred Cce-eEEEEEEecCCCcccCCcccccCCCCCCCcEEEECccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcC
Confidence 654 5999986532 157889999 5 6765443444667777778889
Q ss_pred ccCCccccccc---ccCcCCCCCCCCCCCCCCCccEEEEEeee-ccCCCC
Q psy17146 834 VPMDQRYHRYS---SADFADAVFPSLKPDGHNNNGFVFSDFIR-DYNQTL 879 (1011)
Q Consensus 834 ~~~~~~~~~~~---~~~~~~i~W~p~~~~~~ng~~~gY~v~~r-~~~~~~ 879 (1011)
.++.......+ +.+...|+|+||.. .++.+++|.|+|| ..+...
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~l~W~~p~~--~~~~~l~Y~v~y~~~~~~~~ 254 (313)
T 2d9q_B 207 MLRTMDPSPEAAPPQAGCLQLSWEPWQP--GLHINQKCELRHKPQRGEAS 254 (313)
T ss_dssp EEEECCC-------CCSCEEEEEECCGG--GTTSCEEEEEEEEESSSCCC
T ss_pred ceeEEEEecccccCCCCeEEEEECCCCC--CCceeEEEEEEEccCCCCCC
Confidence 88765541000 12233569999753 3344689999999 555444
No 363
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Probab=99.62 E-value=2.4e-15 Score=164.44 Aligned_cols=235 Identities=11% Similarity=0.033 Sum_probs=150.8
Q ss_pred CceEEEcCCCcEEEEEEEecC-----CCCeEEEEecCCceee------cCC---CcEEEeecCCCCCEEEEEEEEecCCC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGN-----PAPEITWIHEDSDKVV------GNS---PNLTLLMTSDDLAGRYYCKASVMGFP 616 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~-----p~p~v~W~k~~~~~~~------~~~---~~L~I~~v~~~d~G~Y~C~a~n~~~~ 616 (1011)
|.+..+..|++++|.|.+.+. |.+.+.|+++|..+.. .++ +.|+|.++..+|+|.|+|.|.+ +.+
T Consensus 7 p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~-~~~ 85 (313)
T 2d9q_B 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWG-NSL 85 (313)
T ss_dssp ESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESS-SSE
T ss_pred CCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCccceEEEecCeEEEEEEEeccCCCccceEEeeecC-CCc
Confidence 457788999999999999997 6789999999865421 122 5699999999999999998865 555
Q ss_pred ceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCC------------
Q psy17146 617 EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDP------------ 684 (1011)
Q Consensus 617 ~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~------------ 684 (1011)
.....+.|.|..+|. ....|.|...+.+..+.+.|......- ....|.+....
T Consensus 86 ~~~~~~~l~v~~~P~------------~P~~l~c~~~~~~~~~~~~W~~~~~~~---~~~~Y~l~~~~~~~~~~~~~~~~ 150 (313)
T 2d9q_B 86 QILDQVELRAGYPPA------------IPHNLSCLMNLTTSSLICQWEPGPETH---LPTSFTLKSFKSRGNCQTQGDSI 150 (313)
T ss_dssp EEEEEEEEEECCCCC------------CCEEEEEEEETTTTEEEEEEECCSCCS---SCCEEEEEEEECCTTSCSCCCCE
T ss_pred eeEEEEEEccCCCCC------------CCccceeeECCCCccEEEEecCCCCCC---CceeEEEEEEecCCCcccCCccc
Confidence 566778888877664 345666766654443366775432110 01122221100
Q ss_pred -----cCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEE-EEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeec
Q psy17146 685 -----LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSV-EIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRK 758 (1011)
Q Consensus 685 -----~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 758 (1011)
........+...++.....+.++|.|.|.+|.... .+.+...+ .
T Consensus 151 ~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~------------------------------~ 200 (313)
T 2d9q_B 151 LDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMD------------------------------V 200 (313)
T ss_dssp EEECCCTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGG------------------------------G
T ss_pred ccCCCCCCCcEEEECccccccceeEEEEEEEECCCCCccCccEEEehhh------------------------------e
Confidence 00112233444457788888899999999997532 22232210 1
Q ss_pred cCCCCCCCCccccc------ccccccccc-cCCCCCCCCcCcceeee-cCcc---------------------ccccccc
Q psy17146 759 VKKPPPGNGIEHHV------TADGEKNQC-KESDNSSNISDIKLEFR-TGSS---------------------VSNVHLD 809 (1011)
Q Consensus 759 ~~~~~p~~~~~~~~------~~~s~~~~W-~~~d~~s~I~~Y~ve~~-~~~~---------------------~p~~~Y~ 809 (1011)
.++.||.++.+... ..+++.|+| ++.+++..+.+|.|+|+ .... .|+++|+
T Consensus 201 ~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~~~~~~l~Y~v~y~~~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~ 280 (313)
T 2d9q_B 201 VKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYT 280 (313)
T ss_dssp EECCCCEEEECCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEE
T ss_pred eccCcCceeEEEEecccccCCCCeEEEEECCCCCCCceeEEEEEEEccCCCCCCcEEcccccCcceEEEEeCCCCCCeEE
Confidence 24458888887776 467899999 55555555689999998 4322 6888999
Q ss_pred c---c---CCCCCCC----ccccccccccccc
Q psy17146 810 Y---A---GHDSETG----SESVHTRIGVPLA 831 (1011)
Q Consensus 810 f---A---~G~g~~s----s~~~~t~~~~P~~ 831 (1011)
| | .|.|..| ...++|.+++|.+
T Consensus 281 ~rVra~~~~g~G~wS~wS~~~~~~T~~~~P~~ 312 (313)
T 2d9q_B 281 LQIRCIRWPLPGHWSDWSPSLELRTTERAAAP 312 (313)
T ss_dssp EEEEEEECSSCCCCCCCCCCEEECCCC-----
T ss_pred EEEEeeECCCCCccCCCCCccceeCCccCCCC
Confidence 9 4 5777655 4457888888864
No 364
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.62 E-value=6.5e-15 Score=153.22 Aligned_cols=174 Identities=19% Similarity=0.257 Sum_probs=116.0
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--ce----------------------eec-----CCCcEEEeecC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--DK----------------------VVG-----NSPNLTLLMTS 599 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~~----------------------~~~-----~~~~L~I~~v~ 599 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|... .. ... ...+|+|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (232)
T 1dn0_B 7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT 86 (232)
T ss_dssp ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence 4456789999999999999875 67899998631 10 000 12379999999
Q ss_pred CCCCEEEEEEEEe-cCCC----ceeeEEEEEEcC----CCeeec-CCceeeecC-CcEEEEEEEEec-CCCCeEEEEE-C
Q psy17146 600 DDLAGRYYCKASV-MGFP----EVGAEATVYLKG----RPTIIS-HRTQFGIPG-DTARVECSAFSI-PPPEKVTWSY-R 666 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n-~~~~----~~s~~~~l~V~~----~P~i~~-~~~~~v~~G-~~v~L~C~~~g~-p~p~~v~W~~-~ 666 (1011)
.+|+|.|.|.+.+ .+.+ .....+.|.|.. +|.+.. .+...+..| +.++|.|.+.|. |.|..|+|++ |
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~ 166 (232)
T 1dn0_B 87 AADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKN 166 (232)
T ss_dssp GGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETT
T ss_pred cccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCC
Confidence 9999999999984 1211 123446788865 365552 222335578 999999999987 7766999999 9
Q ss_pred CeEecccCCCCeEEecCCcCccceeEEEEcCCCC--CCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 667 GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRH--DHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 667 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|..+....... ..... ......+.|.|..... +|.|.|+|.|.|..|.......+.|.
T Consensus 167 g~~l~~~~~~~-~~~~~-~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~ 226 (232)
T 1dn0_B 167 NSDISSTRGFP-SVLRG-GKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI 226 (232)
T ss_dssp SCEECCEEECC-CEEET-TEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred CCceeeEEECC-ccccC-CcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence 98875200000 00000 0011246899998887 88999999999999988877777664
No 365
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.62 E-value=5.6e-15 Score=152.59 Aligned_cols=158 Identities=20% Similarity=0.340 Sum_probs=113.3
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCCc--e-------------------------ee-----cCCCcEEEe
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDSD--K-------------------------VV-----GNSPNLTLL 596 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~~--~-------------------------~~-----~~~~~L~I~ 596 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|.... . .. ....+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 86 (221)
T 3m8o_H 7 SGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMN 86 (221)
T ss_dssp ESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEEC
T ss_pred cCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEEC
Confidence 4467799999999999999854 679999985321 0 00 112359999
Q ss_pred ecCCCCCEEEEEEEEecCC-CceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEe-cCC-CCeEEEEECCe
Q psy17146 597 MTSDDLAGRYYCKASVMGF-PEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFS-IPP-PEKVTWSYRGE 668 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~-~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g-~p~-p~~v~W~~~g~ 668 (1011)
+++.+|+|.|.|.+.|... ......+.|.|. .+|.+. ...... ..|+.++|.|.+.+ .|. +..+.|+++|+
T Consensus 87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~ 165 (221)
T 3m8o_H 87 SLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQ 165 (221)
T ss_dssp SCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCST
T ss_pred CCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECCE
Confidence 9999999999999998421 233444567775 345555 222222 78999999999998 676 45899999998
Q ss_pred Eeccc--------CCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeE
Q psy17146 669 EIGVG--------SSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 669 ~l~~~--------~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~ 718 (1011)
.+... .++.|. ..+.|.|.....+|.|.|+|.|.|..|...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~---------~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~ 214 (221)
T 3m8o_H 166 GVTARNFPPSQDASGDLYT---------TSSQLTLPATQCLAGKSVTCHVKHYTNPSQ 214 (221)
T ss_dssp TCEEEECCCEECSSSSCEE---------EEEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred ECceEEcCceeeCCCCcEE---------EEEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence 77421 112222 235799999999999999999999987543
No 366
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.61 E-value=2.1e-13 Score=136.25 Aligned_cols=181 Identities=14% Similarity=0.202 Sum_probs=130.9
Q ss_pred CCcccccCCcEEEEEEeecCCC---ccEEEEEECCeecCCCcCccEEEEeecccccCCcEEEEEEEcCCccceeeEEEEE
Q psy17146 311 GSNRLVEGTDVRLYCKAEANPS---HMKYRWYINDQPVPAAASATELYLTNITRHQHDSIVKCEVHNDVGKSEDSETLDV 387 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~~~p~---~~~i~W~k~g~~l~~~~~~~~L~I~~~~~~~d~G~Y~C~a~n~~g~~~~s~~l~V 387 (1011)
....+..|+.++|.|.+.+..+ +..|+|+|||..+.. ....|.|..+... |+|.|+|++.+..|....+..+.|
T Consensus 10 ~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG--aT~tLti~s~t~s-dSG~YqCvVTDa~Gcs~tSs~VtV 86 (304)
T 3shs_A 10 NKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN--NTATLTVADATSE-NAGSYKVTVQDTDTMTSVESEVFL 86 (304)
T ss_dssp SCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC--CSSEEEESSCCGG-GCEEEEEEEEETTTCCEEECCCEE
T ss_pred CCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC--CcceEEeeecccc-CCeEEEEEEEECCCCeeeeeeEEE
Confidence 4567899999999999887643 679999999999765 4568999999887 999999999998887655555555
Q ss_pred Eecc--eEe-eCCCceEecCCCcEEEEeec--C-CCC-----CCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEE
Q psy17146 388 TYGP--RFR-ARPYSVQVDRGAGVNLLCDV--D-GNP-----APEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKA 456 (1011)
Q Consensus 388 ~~~P--~~~-~~p~~~~v~~G~~v~l~C~~--~-g~p-----~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a 456 (1011)
...+ .+. ..|....+..|..+.|.+.+ . |.| ..++.|+|++..+ .....|++......++|.|+|.+
T Consensus 87 T~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~I--sgAq~lT~sS~TateaG~YtV~V 164 (304)
T 3shs_A 87 MEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI--DTTQDITIQEFTADKNGVYTVKV 164 (304)
T ss_dssp ECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEE--ESSSEEEECSCCGGGCEEEEEEE
T ss_pred eccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEc--cCccccceeeEEecCCeEEEEEE
Confidence 5533 332 34666677788999999987 4 344 4699999998644 34456788888999999999999
Q ss_pred EEcCC-cceeeEEEEEEcCCCeeecc-CcccccCCCeEEEEe
Q psy17146 457 SVMGF-PEVGAEATVYLKGRPTIISH-RTQFGIPGDTARVEC 496 (1011)
Q Consensus 457 ~n~~~-~~~s~~~~v~v~~~p~~~~~-~~~~~~~g~~~~l~C 496 (1011)
.|..+ ...++.+.|.+...+.-... ....+..|+.+.|..
T Consensus 165 Tn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~ 206 (304)
T 3shs_A 165 WGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNY 206 (304)
T ss_dssp ESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECC
T ss_pred EcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEE
Confidence 99644 56677777777544332222 222334444444443
No 367
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.61 E-value=2.5e-15 Score=132.68 Aligned_cols=95 Identities=26% Similarity=0.385 Sum_probs=82.2
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.||.|. .+.+..+.+|+.++|.|.+.|.|.| .|+|+|||+.+......++.+.. .+..++|.|.+++.+|+|.|
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p-~v~W~k~g~~i~~~~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y 78 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTP-EVTWSCGGRKIHSQEQGRFHIEN----TDDLTTLIIMDVQKQDGGLY 78 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCC-EEEEEETTEECCTTGGGTEEEEE----CSSEEEEEESSCCGGGCEEE
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCC-EEEEEECceEeeeeccceeeeec----ccceEEEEEcCCCccCCEEE
Confidence 367777 4567789999999999999999999 99999999999865556777665 34467999999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+|.|+|.+|.++.++.|.|++
T Consensus 79 ~C~a~N~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 79 TLSLGNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECCCEEEEEEEEEEEE
Confidence 999999999999999999863
No 368
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.61 E-value=3.9e-15 Score=160.74 Aligned_cols=161 Identities=17% Similarity=0.303 Sum_probs=116.6
Q ss_pred CCceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--ce-----------------------ee-----cCCCcEEEee
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--DK-----------------------VV-----GNSPNLTLLM 597 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~~-----------------------~~-----~~~~~L~I~~ 597 (1011)
.|..+.+.+|++++|.|.+.+.+ .+.+.|+|+.. .. .. ....+|+|.+
T Consensus 28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 107 (291)
T 2gki_A 28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS 107 (291)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence 35578899999999999999887 57999999631 10 00 1134799999
Q ss_pred cCCCCCEEEEEEEEecCCC----ceeeEEEEEEcC----------------CCeeec-CCceeeecCCcEEEEEEEEecC
Q psy17146 598 TSDDLAGRYYCKASVMGFP----EVGAEATVYLKG----------------RPTIIS-HRTQFGIPGDTARVECSAFSIP 656 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~~~----~~s~~~~l~V~~----------------~P~i~~-~~~~~v~~G~~v~L~C~~~g~p 656 (1011)
++.+|+|.|+|.+.|...+ .....+.|.|.. ++.+.. +....+.+|++++|.|.+.+.|
T Consensus 108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~ 187 (291)
T 2gki_A 108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSL 187 (291)
T ss_dssp CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCC
T ss_pred CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcc
Confidence 9999999999999984211 122345777876 344554 4567799999999999999887
Q ss_pred CC-----CeEEEEEC--CeE---ecc-------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 657 PP-----EKVTWSYR--GEE---IGV-------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 657 ~p-----~~v~W~~~--g~~---l~~-------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
.+ ..+.|+|+ |.. +.. ....++.+.. .+...+|+|.+++.+|+|.|+|.|.|..
T Consensus 188 ~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~ 258 (291)
T 2gki_A 188 FNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG----SGTDFTLTISSVQAEDLAVYYCKQSYYH 258 (291)
T ss_dssp EETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred ccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEe----cCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence 64 27999996 321 111 0134555432 2345789999999999999999999964
No 369
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=160.51 Aligned_cols=163 Identities=18% Similarity=0.274 Sum_probs=118.8
Q ss_pred eecCCceEEEcCCCcEEEEEEEecC--CCCeEEEEecCCc-------------------------eeec-----CCCcEE
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDSD-------------------------KVVG-----NSPNLT 594 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~~-------------------------~~~~-----~~~~L~ 594 (1011)
+.. |..+.+.+|++++|.|.+.+. +.+.+.|+|.... .... ...+|+
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (280)
T 3fku_X 4 LVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMD 82 (280)
T ss_dssp EEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEE
T ss_pred EEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEE
Confidence 445 778899999999999999886 5679999985311 0000 113799
Q ss_pred EeecCCCCCEEEEEEEEec--------CCCceeeEEEEEEcC---------------CCeeecCCceeeecCCcEEEEEE
Q psy17146 595 LLMTSDDLAGRYYCKASVM--------GFPEVGAEATVYLKG---------------RPTIISHRTQFGIPGDTARVECS 651 (1011)
Q Consensus 595 I~~v~~~d~G~Y~C~a~n~--------~~~~~s~~~~l~V~~---------------~P~i~~~~~~~v~~G~~v~L~C~ 651 (1011)
|.+++.+|+|.|+|.+.|. ........+.|.|.. +|.+..++...+.+|++++|.|.
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~C~ 162 (280)
T 3fku_X 83 LRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCT 162 (280)
T ss_dssp ECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEEEE
T ss_pred ECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEEEE
Confidence 9999999999999999984 122344556777876 66676555588999999999999
Q ss_pred EEe-cCC-CCeEEEEEC--CeEecc----------cCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 652 AFS-IPP-PEKVTWSYR--GEEIGV----------GSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 652 ~~g-~p~-p~~v~W~~~--g~~l~~----------~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
+.+ .+. + .+.|+|. +..+.. ....++.+.. .+....|+|.+++.+|+|.|.|.|.|..+
T Consensus 163 ~~~~~~~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 235 (280)
T 3fku_X 163 GNSNNVGNQ-GAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASR----SGNTASLTITGLQPEDEADYYCSTWDSSL 235 (280)
T ss_dssp CCCCCCCTT-CCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEE----ETTEEEEEECSCCGGGCSEEEEEEEETTT
T ss_pred ecCCCCCCc-eEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEc----cCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 998 443 5 8999983 322210 1134555543 23456799999999999999999999873
No 370
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A
Probab=99.60 E-value=7.2e-15 Score=159.91 Aligned_cols=232 Identities=16% Similarity=0.081 Sum_probs=154.5
Q ss_pred cCCceEEEcCCCcEEEEEEEec-------CCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDG-------NPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g-------~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
..|++..+..|++++|.|.+.+ .|.+.|.|+|+|..+. ....+.|+|.++...| |.|+|.|.|.+
T Consensus 9 i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~g 87 (303)
T 1i1r_A 9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLN-IQLTCNILTFG 87 (303)
T ss_dssp EESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGGCEEEETTEEEEEECSCCCSE-EEEEEEEEETT
T ss_pred EccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChhheeeeCCcEEEEEEcCcCCCc-eEEEEecccCC
Confidence 4577888999999999999986 4889999999985442 1223579999999885 99999998842
Q ss_pred CCc-eeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCc--------
Q psy17146 615 FPE-VGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL-------- 685 (1011)
Q Consensus 615 ~~~-~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~-------- 685 (1011)
... ....+.|.+..+|. ....|.|...+.... .++|......- ....|.+.....
T Consensus 88 ~~~~~~~~~~l~v~~~P~------------~P~~l~~~~~~~~~v-~l~W~~~~~~~---~~~~Y~v~~~~~~~~~~~~~ 151 (303)
T 1i1r_A 88 QLEQNVYGITIISGLPPE------------KPKNLSCIVNEGKKM-RCEWDGGRETH---LETNFTLKSEWATHKFADCK 151 (303)
T ss_dssp TEEEEEEEEEEEEECCCC------------CCEEEEEEEETTSCC-EEEEECCSCCS---SCCEEEEEEEETTEECCCEE
T ss_pred CcceEEEEEEEeccCCCC------------CCeeeEEEECCCCcE-EEEccCCCCCC---CCcCEEEEEEecCCCCccCC
Confidence 222 23445566665553 445678877665444 78887532210 112333321100
Q ss_pred -CccceeEEEEcCC-CCCCCEEEEEEEEcCCCCeEE-EEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCC
Q psy17146 686 -KEGIKSTLIIRES-RHDHFGVYNCSVSNPYGSDSV-EIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKP 762 (1011)
Q Consensus 686 -~~~~~~~L~I~~~-~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 762 (1011)
..+....+.|.++ .....+.++|.|.|..|.... .+.+.... ..++.
T Consensus 152 ~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~------------------------------~~~p~ 201 (303)
T 1i1r_A 152 AKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVY------------------------------KVKPN 201 (303)
T ss_dssp CCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGG------------------------------GEECC
T ss_pred CcCCCceEEEECCcCcccccEEEEEEEEcCCCCcccCCEEECHHH------------------------------eEecC
Confidence 1122467889998 788888999999999997642 22222110 12344
Q ss_pred CCCCCccccc--ccccccccc-cCCCCCCCCcCcceeeecCcc-----------------------cccccccc---c--
Q psy17146 763 PPGNGIEHHV--TADGEKNQC-KESDNSSNISDIKLEFRTGSS-----------------------VSNVHLDY---A-- 811 (1011)
Q Consensus 763 ~p~~~~~~~~--~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~~~-----------------------~p~~~Y~f---A-- 811 (1011)
||.++.+... +.+++.|+| ++.+.+++|.+|.|+|+.... .|+++|+| |
T Consensus 202 pP~~~~v~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~y~~~~~~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n 281 (303)
T 1i1r_A 202 PPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMK 281 (303)
T ss_dssp CCEEEEEECCSSSSSCEEEEEECCGGGGTSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEE
T ss_pred CCcceEEEEecCCCCEEEEEECCCCCCCcccEEEEEEEEeCCCCCceEEccccCCCceeEEEeCCCCCCCEEEEEEEecc
Confidence 7887777644 678999999 555666799999999986422 67889999 4
Q ss_pred -CCCCCCC--c--cccccccc
Q psy17146 812 -GHDSETG--S--ESVHTRIG 827 (1011)
Q Consensus 812 -~G~g~~s--s--~~~~t~~~ 827 (1011)
.|.|.+| | ..++|.++
T Consensus 282 ~~G~G~~S~wS~~~~~~T~e~ 302 (303)
T 1i1r_A 282 EDGKGYWSDWSEEASGITYED 302 (303)
T ss_dssp TTSCSCCCCCCCCEEEECCCC
T ss_pred CCCCCCcCCCCCccceeCCcC
Confidence 6888777 3 23556554
No 371
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.60 E-value=2.6e-15 Score=157.64 Aligned_cols=188 Identities=17% Similarity=0.280 Sum_probs=124.6
Q ss_pred ecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCC--------c-----ccCCCCcceEEeecCCCceeEEEEe
Q psy17146 32 MEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGP--------H-----RNLSGFDRYAMIGSDEEGDYSLEIY 95 (1011)
Q Consensus 32 ~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~--------~-----~~~~~~~r~~i~~~~~~~~~~L~I~ 95 (1011)
.+|..+.+.+|++|+|.|.+.+. ...+.|+|....... . ..-...+|+.+..+...+.++|+|.
T Consensus 4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 83 (248)
T 3u2s_H 4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN 83 (248)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence 45778999999999999999752 347999985421100 0 0011237888877666678899999
Q ss_pred ecccCCCceEEEEEEeCCC-------------CC-----cceeeeEEEEEEE-cCCCCCeee-cCCeeeecCCCcEEEEE
Q psy17146 96 PVMLDDDARYQCQVSTGIL-------------GE-----PAIRSRFATLTVL-VPPDPPRIV-QGDTLYTTEDREIELEC 155 (1011)
Q Consensus 96 ~v~~~D~G~Y~C~~~~~~~-------------~~-----~~~~s~~~~l~V~-~~p~~~~i~-~~~~~~v~eg~~v~L~C 155 (1011)
+++.+|+|.|.|.+.+... +. .......+.|+|. ..+.+|.+. ..+...+.+|+.+.|.|
T Consensus 84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C 163 (248)
T 3u2s_H 84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC 163 (248)
T ss_dssp SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEE
T ss_pred CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEE
Confidence 9999999999999986310 00 1123344677887 444555554 33344456799999999
Q ss_pred EccCCCC-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 156 ISANGKP-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 156 ~~~~g~P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
.+....| ...+.|++++..+..... ......+ ..+...+.|.|.....+| |.|+|.|.|..+..
T Consensus 164 ~~~~~~P~~~~v~W~~~g~~~~~~~~-~~~~~~~-g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~ 228 (248)
T 3u2s_H 164 LVKDYFPEPVTVSWNSGALTSGVHTF-PAVLQSS-GLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 228 (248)
T ss_dssp EEEEEBSSCCEEEEGGGTBCTTEEEC-CCEECTT-SCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTE
T ss_pred EEeeEECCCeEEEEeECCccCceeec-CceECCC-CCEEEEEEEEEChhhcCC-CeEEEEEEECCCCc
Confidence 9665577 578999998864322111 0112223 356667889999998888 99999999987755
No 372
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.60 E-value=2.4e-15 Score=159.39 Aligned_cols=187 Identities=16% Similarity=0.239 Sum_probs=121.1
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCCc------c------cCCCCcceEEeecCCCceeEEEEeec
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGPH------R------NLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~~------~------~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.|..+.+.+|++|+|.|.+.+. ...+.|+|....-... . .....+|+.+..+...+.++|+|.++
T Consensus 6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 85 (263)
T 3iu4_H 6 ESGPGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSL 85 (263)
T ss_dssp EECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSC
T ss_pred CCCCEEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCC
Confidence 3456889999999999999753 4579999854211000 0 01123688887766667889999999
Q ss_pred ccCCCceEEEEEEeCCCC----CcceeeeEEEEEEEc-CCCCCeee-cCCeeeecCCCcEEEEEEccCCCCC-cEEEEEe
Q psy17146 98 MLDDDARYQCQVSTGILG----EPAIRSRFATLTVLV-PPDPPRIV-QGDTLYTTEDREIELECISANGKPP-AEITWID 170 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~~----~~~~~s~~~~l~V~~-~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k 170 (1011)
+.+|+|.|.|.+.+...+ ........+.|+|.. .+.+|.+. ..+...+.+|+.+.|.|.+....|. +.++|
T Consensus 86 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W-- 163 (263)
T 3iu4_H 86 QTDDTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAASTKGPSVFPLAPSSKGSTSGTAALGCLVKDYFPEPVTVSW-- 163 (263)
T ss_dssp CGGGCEEEEEEEEECC---CEEEEEEECCCEEEEECSSCCBCCEEEEECCCCCC----EEEEEEEEEEEBSSCCEEEE--
T ss_pred CHHHCEEEEEEEEeCCCCccccccceeCCceEEEEecccCCCCEEEEccCccccccCCcEEEEEEEEeEeCCceEEEE--
Confidence 999999999999874210 011223445777763 33455554 3334445689999999996666774 78999
Q ss_pred CCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 171 GTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++..+..+.............+...+.|.|.....+| |.|+|.|.|..+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~ 214 (263)
T 3iu4_H 164 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 214 (263)
T ss_dssp GGGTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-CCCEEEEEEGGGTE
T ss_pred CCcccCCceeecCceECCCCCEEEEEEEEECHhHcCC-CEEEEEEEECCCCc
Confidence 4444332222111122233456667899999998889 99999999987754
No 373
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.60 E-value=6e-15 Score=156.13 Aligned_cols=171 Identities=18% Similarity=0.316 Sum_probs=117.7
Q ss_pred cCCceEEEcCCCcEEEEEEEecCC--CCeEEEEecC--Ccee-----------------------e-----cCCCcEEEe
Q psy17146 549 ARPYSVQVDRGAGVNLLCDVDGNP--APEITWIHED--SDKV-----------------------V-----GNSPNLTLL 596 (1011)
Q Consensus 549 ~~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~--~~~~-----------------------~-----~~~~~L~I~ 596 (1011)
..|..+.+.+|++++|.|.+.+.+ .+.+.|+|+. .... . ....+|+|.
T Consensus 11 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 90 (261)
T 2xqy_G 11 QQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLS 90 (261)
T ss_dssp ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred ECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEc
Confidence 346678899999999999999887 6899999874 2110 0 113479999
Q ss_pred ecCCCCCEEEEEEEEecCCC--ceeeEEEEEEcC----CCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCe
Q psy17146 597 MTSDDLAGRYYCKASVMGFP--EVGAEATVYLKG----RPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGE 668 (1011)
Q Consensus 597 ~v~~~d~G~Y~C~a~n~~~~--~~s~~~~l~V~~----~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~ 668 (1011)
+++.+|+|.|.|.+.|.... .....+.|.|.. +|.+. ..+...+..|+.++|.|.+.|. |.|+.|.|++++.
T Consensus 91 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~ 170 (261)
T 2xqy_G 91 SLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL 170 (261)
T ss_dssp SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred CCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCC
Confidence 99999999999999983211 122345788864 46654 2333346789999999999986 7666899999988
Q ss_pred EecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 669 EIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
.+........ ... ......+.|.|.....+| |.|+|.|.|..........+
T Consensus 171 ~~~~~~~~~~--~~~-g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~~~ 221 (261)
T 2xqy_G 171 SSGVHTFPAV--LQS-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKI 221 (261)
T ss_dssp CTTEEECCCE--EET-TEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred cCceEecCce--ecC-CcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEEEe
Confidence 6532111111 111 011124789999998888 99999999987665444433
No 374
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.59 E-value=9.3e-15 Score=156.86 Aligned_cols=174 Identities=18% Similarity=0.248 Sum_probs=118.9
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC--ce-----------------------ee----cCCCcEEE
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS--DK-----------------------VV----GNSPNLTL 595 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~--~~-----------------------~~----~~~~~L~I 595 (1011)
+.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|++. .. .. ....+|+|
T Consensus 25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (279)
T 2wbj_D 25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV 104 (279)
T ss_dssp CCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEE
T ss_pred ceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEE
Confidence 455667788999999999999999988889999998741 10 00 11247999
Q ss_pred eecCCCCCEEEEEEEEecCC-----CceeeEEEEEEcC------CCeeec--CCceeeecCCcEEEEEEEEec-CCCCeE
Q psy17146 596 LMTSDDLAGRYYCKASVMGF-----PEVGAEATVYLKG------RPTIIS--HRTQFGIPGDTARVECSAFSI-PPPEKV 661 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~-----~~~s~~~~l~V~~------~P~i~~--~~~~~v~~G~~v~L~C~~~g~-p~p~~v 661 (1011)
.+++.+|+|.|+|.|.|... ......+.|.|.. +|.+.. +....+..|+.++|.|.+.|. |.+..|
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v 184 (279)
T 2wbj_D 105 TSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 184 (279)
T ss_dssp SSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEE
T ss_pred ccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEE
Confidence 99999999999999998211 0112335677754 666652 333445679999999999997 442389
Q ss_pred EEEECCeEecccCCCC-eEEec-CCcCcc---ceeEEEEcCCCCCC-CEEEEEEEEcCCCCeE
Q psy17146 662 TWSYRGEEIGVGSSDD-YSVLE-DPLKEG---IKSTLIIRESRHDH-FGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 662 ~W~~~g~~l~~~~~~~-~~~~~-~~~~~~---~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~~ 718 (1011)
+|++||+++....... ..... ....++ ..+.|.|......| .|.|+|.|.|......
T Consensus 185 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~ 247 (279)
T 2wbj_D 185 SWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 247 (279)
T ss_dssp EEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred EEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence 9999999886321000 00000 000111 24578998887764 6789999999887654
No 375
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}
Probab=99.59 E-value=5.6e-16 Score=185.95 Aligned_cols=443 Identities=12% Similarity=0.044 Sum_probs=229.6
Q ss_pred CCcccccCCcEEEEEEee-------cCCCccEEEEEECCeecCCC------cCccEEEEeecccccCCcEEEEEEEcCC-
Q psy17146 311 GSNRLVEGTDVRLYCKAE-------ANPSHMKYRWYINDQPVPAA------ASATELYLTNITRHQHDSIVKCEVHNDV- 376 (1011)
Q Consensus 311 ~~~~v~~g~~v~l~C~~~-------~~p~~~~i~W~k~g~~l~~~------~~~~~L~I~~~~~~~d~G~Y~C~a~n~~- 376 (1011)
.+..+..|+.++|.|.+. +.+.+ .|.|++||+.+... .....|.|.++... |+ .|.|.+....
T Consensus 11 ~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~-~i~W~~~~~~i~~~~~~~~~~~~~~l~i~~~~~~-~~-~y~C~~~~~~~ 87 (589)
T 3l5h_A 11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNAN-YIVWKTNHFTIPKEQYTIINRTASSVTFTDIASL-NI-QLTCNILTFGQ 87 (589)
T ss_dssp SCCCCCSSSCCCCCC-CCTTTTTTTTCCTT-TCCCBCSSSBSCGGGCBCCSSSCCBCCCCCCCSS-CC-CCCCC-CCTTC
T ss_pred CCCEEeCCCCEEEEEEEeCccCcccccccc-ceEEEeCCEECChHHccccCCcEeEEEEecCCCc-ce-eeEEecccCCC
Confidence 456788999999999998 44444 89999999877542 23567889998875 64 5789886421
Q ss_pred -ccceeeEEEEEEecceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCc----------------e--ee---c
Q psy17146 377 -GKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD----------------K--VV---G 434 (1011)
Q Consensus 377 -g~~~~s~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~----------------~--~~---~ 434 (1011)
+.....+.|.|..+| +....|.|...+.....+.|...... . .. .
T Consensus 88 ~~~~~~~~~l~v~~pP-------------~~P~nl~c~~~~~~~~~~~W~~~~~~~~~~~y~l~~~~~~~~~~~c~~~~~ 154 (589)
T 3l5h_A 88 LEQNVYGITIISGLPP-------------EKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRD 154 (589)
T ss_dssp C-CCCCCCCCCC-CCC-------------CCCEEEEEEEETTSCEEEEEECCSCCSSCEEEEECCBCSSSBCCCEECBTT
T ss_pred cccEEEeEEEeccCCC-------------CCCEeeEEEECCCceEEEEECCCCcCCcCceEEEEEEEcCCCcccCCCCCC
Confidence 112344455555544 23344555554444455555543210 0 00 0
Q ss_pred cCCcEEEE-eeccCCCeEEEEEEEEcCCcceeeEEEEEEcC--CCeeeccCcc--cccCCCeEEEEeEeeeCCCCCeeEE
Q psy17146 435 NSPNLTLL-MTSDDLAGRYYCKASVMGFPEVGAEATVYLKG--RPTIISHRTQ--FGIPGDTARVECSAFSIPPPEKVTW 509 (1011)
Q Consensus 435 ~~~~L~I~-~v~~~d~G~Y~C~a~n~~~~~~s~~~~v~v~~--~p~~~~~~~~--~~~~g~~~~l~C~~~~~~~~~~v~W 509 (1011)
......|. ++.......|+|.|.|..+...+..+.+.... +|........ .......+ .++|
T Consensus 155 ~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~v-------------~l~W 221 (589)
T 3l5h_A 155 TPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSIL-------------KLTW 221 (589)
T ss_dssp BSSCCBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECGGGSEECCCCCSCEEECTTTCTTCE-------------EEEC
T ss_pred CcEEEEECCCCchheeEEEEEEEEeCCCCcccccEEEccccEEEcCCCceEEEEecCCCCCeE-------------EEEe
Confidence 11223333 34555667788999996555444434332211 1110000000 00112223 3344
Q ss_pred eeCCeEeeccCCCceEEEcCCCCCcccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecC
Q psy17146 510 SYRGEEIGVGSSDDYSVHNDVGKSEDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN 589 (1011)
Q Consensus 510 ~~~~~~i~~~~~~~y~~~n~~G~~~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~ 589 (1011)
...... .| ..+.+.+.-.+...-.|..-........
T Consensus 222 ~~p~~~------------------------------------------~~--~~~~Y~v~~~~~~~~~w~~~~~~~~~~~ 257 (589)
T 3l5h_A 222 TNPSIK------------------------------------------SV--IILKYNIQYRTKDASTWSQIPPEDTAST 257 (589)
T ss_dssp CCCGGG------------------------------------------GT--SCEEEEEEEEETTCSCCBCCCTTSSCSC
T ss_pred CCCCCC------------------------------------------Ce--eeEEEEEEECCCCCCCcEEEccccCcCc
Confidence 321100 00 0011111000000001221110111223
Q ss_pred CCcEEEeecCCCCCEEEEEEEEec-CCCce---eeEEEEEE-cCCCeeecCCce-ee-----ecCCcEEEEEEEEe--cC
Q psy17146 590 SPNLTLLMTSDDLAGRYYCKASVM-GFPEV---GAEATVYL-KGRPTIISHRTQ-FG-----IPGDTARVECSAFS--IP 656 (1011)
Q Consensus 590 ~~~L~I~~v~~~d~G~Y~C~a~n~-~~~~~---s~~~~l~V-~~~P~i~~~~~~-~v-----~~G~~v~L~C~~~g--~p 656 (1011)
...+.|.++.......|+.+|.|. +.+.. +..+.+.- ...|.. .+... .+ .....+.|.+.... .+
T Consensus 258 ~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~-~p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~ 336 (589)
T 3l5h_A 258 RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSK-APSFWYKIDPSHTQGYRTVQLVWKTLPPFEA 336 (589)
T ss_dssp CSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCS-CCCEEEECCSCSSTTSCCEEEEECCCCTTTS
T ss_pred eeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCC-CCcEEEEeecCcCCCcceEEEEEeeCCchhc
Confidence 467889999999999999999983 22322 22221111 111210 11100 01 12345666654210 00
Q ss_pred C-C---CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeE
Q psy17146 657 P-P---EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLL 732 (1011)
Q Consensus 657 ~-p---~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~ 732 (1011)
. + ..|.|...+.... .. ......+.+ +.....+.+++.|.|..|....+. +.+..
T Consensus 337 ~g~i~~Y~v~~~~~~~~~~-------~~------~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~~s~-~~~~~----- 395 (589)
T 3l5h_A 337 NGKILDYEVTLTRWKSHLQ-------NY------TVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAV-LTIPA----- 395 (589)
T ss_dssp SSCCCEEEEEECCTTSCCC-------BC------CCSSSCCEE--CCCSSCCCEEEEEEBTTBCCCCCC-CCCCC-----
T ss_pred cCceeeEEEEEecCCCCce-------ee------ccCCceEEE--EeCCCCEEEEEEEEeCCccCCCeE-EEeec-----
Confidence 0 0 1233322221110 00 011123333 446677889999999999664332 11110
Q ss_pred EEEEeeehHHHHHHHhhhheeeeeeccCCC-CCCCCcccccccccccccccCCCCCCCCcCcceeeecCcc---------
Q psy17146 733 LILTGVIGCVVILVALTMVVILCQRKVKKP-PPGNGIEHHVTADGEKNQCKESDNSSNISDIKLEFRTGSS--------- 802 (1011)
Q Consensus 733 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~p~~~~~~~~~~~s~~~~W~~~d~~s~I~~Y~ve~~~~~~--------- 802 (1011)
....++ |+.++.+... .+++.++|..... ++.+|+|+++....
T Consensus 396 ------------------------~~~~~~~p~~~l~~~~~-~~si~l~W~~p~~--~i~~Y~v~~~~~~~~~~~~~~~~ 448 (589)
T 3l5h_A 396 ------------------------CDFQATHPVMDLKAFPK-DNMLWVEWTTPRE--SVKKYILEWCVLSDKAPCITDWQ 448 (589)
T ss_dssp ------------------------TTCCCCSCCCSCEEEEC-SSSEEEECCCCSS--CCSCBCCEEEEECSSSCCCEEEC
T ss_pred ------------------------ccccCCCCcceEEEEEC-CCeEEEEEECCCC--CccEEEEEEEECCCCCCCccCcE
Confidence 011223 5556666655 5789999933332 89999999876321
Q ss_pred ---------------cccccccc---c---CCCCCCCcccccccccccccccccCCcccccccccCcCCCCCCCCCCCCC
Q psy17146 803 ---------------VSNVHLDY---A---GHDSETGSESVHTRIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGH 861 (1011)
Q Consensus 803 ---------------~p~~~Y~f---A---~G~g~~ss~~~~t~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ 861 (1011)
.|++.|.| | .|.|.++.....|.+++|..+|. +.... ...+...|+|+|++++..
T Consensus 449 ~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~g~g~~~~~~~~t~~~~P~~pp~-l~~~~---~~~~sv~l~W~~~~~~~~ 524 (589)
T 3l5h_A 449 QEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPT-VRTKK---VGKNEAVLEWDQLPVDVQ 524 (589)
T ss_dssp CBCSSCCEEECCSCCCSSSEEEEEECBEETTEECCCEEEEEESSCCCCSSCCC-CCEEC---CCSSCBEEBCCCCCHHHH
T ss_pred EeeCCcceEEehhccccCcEEEEEEEEEeCCcccCCEEEEEEeccCCCCCCCe-EEEee---cccceEEEEecCCCHHHc
Confidence 78889999 5 77888877777899999988774 54433 123344669999888899
Q ss_pred CCccEEEEEeeeccCCCC
Q psy17146 862 NNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 862 ng~~~gY~v~~r~~~~~~ 879 (1011)
||.+.||.|+|++.+...
T Consensus 525 ~g~i~~Y~v~~~~~~~~~ 542 (589)
T 3l5h_A 525 NGFIRNYTIFYRTIIGNE 542 (589)
T ss_dssp CSCEEEEEECCBCSSCCC
T ss_pred CccceeEEEEEEeCCCCe
Confidence 999999999999876544
No 376
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.59 E-value=1.3e-15 Score=159.00 Aligned_cols=165 Identities=13% Similarity=0.201 Sum_probs=112.4
Q ss_pred ecCCceEE-EcCCCcEEEEEEEecC---CCC-eEEEEecCCceee--------cC------CCcEEEeecCCCCCEEEEE
Q psy17146 548 RARPYSVQ-VDRGAGVNLLCDVDGN---PAP-EITWIHEDSDKVV--------GN------SPNLTLLMTSDDLAGRYYC 608 (1011)
Q Consensus 548 ~~~p~~~~-v~~G~~~~l~C~~~g~---p~p-~v~W~k~~~~~~~--------~~------~~~L~I~~v~~~d~G~Y~C 608 (1011)
...|.... +.+|++++|.|.+.+. |.+ .|+|+|++..+.. .. ...|+|.++..+|+|.|+|
T Consensus 20 ~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C 99 (239)
T 1i1c_A 20 IFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKC 99 (239)
T ss_dssp EECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEE
T ss_pred EECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEE
Confidence 34444444 7899999999999987 776 8999999854321 11 1379999999999999999
Q ss_pred EEEecCCCc--eeeEEEE--EEcCCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEec
Q psy17146 609 KASVMGFPE--VGAEATV--YLKGRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLE 682 (1011)
Q Consensus 609 ~a~n~~~~~--~s~~~~l--~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~ 682 (1011)
.|.|. .+. ....+.+ .+..+|.+.. +.......|+.++|.|.+.|. |.+..|+|+|||+.+......++....
T Consensus 100 ~~~~~-~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~ 178 (239)
T 1i1c_A 100 KVNSG-AFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDT 178 (239)
T ss_dssp EEECS-SSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECT
T ss_pred EEecc-cCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECC
Confidence 99993 332 2333333 4567787652 222223458899999999995 554589999999988532111111111
Q ss_pred CCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 683 DPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 683 ~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
++ ..+.|.|......|.|.|+|.|.|.....
T Consensus 179 ----dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~~ 212 (239)
T 1i1c_A 179 ----DGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLEN 212 (239)
T ss_dssp ----TSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred ----CCCEEEEEEEEEChhhcCCCCEEEEEEECCCCCC
Confidence 22 23456666666667999999999987653
No 377
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.59 E-value=7.2e-15 Score=131.43 Aligned_cols=93 Identities=23% Similarity=0.464 Sum_probs=80.5
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.||.|. .+.+..+.+|++++|.|.+.|.|.| .|+|+|||+.|. .+.++.+.. ++....|.|.++..+|+|.|
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p-~v~W~k~g~~l~--~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y 84 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPP-VVVWEKGGQQLA--ASERLSFPA----DGAEHGLLLTAALPTDAGVY 84 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECC--CCSSEECCE----ETTEEEEEESSCCGGGCEEE
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCC-EEEEEECccccc--ceeeEEEee----cCceEEEEEecCChhhCEEE
Confidence 367776 4567889999999999999999999 999999999997 456676654 34467899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+|.|+|.+|..+.++.|.|.+
T Consensus 85 ~C~a~N~~G~~~~~~~l~V~~ 105 (107)
T 3knb_B 85 VCRARNAAGEAYAAAAVTVLE 105 (107)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECCCEEEEEEEEEEEc
Confidence 999999999999999998854
No 378
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.58 E-value=9.6e-15 Score=154.22 Aligned_cols=171 Identities=20% Similarity=0.334 Sum_probs=116.9
Q ss_pred CceEEEcCCCcEEEEEEEecC--CCCeEEEEecCCc--e-ee---------------------------cCCCcEEEeec
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDSD--K-VV---------------------------GNSPNLTLLMT 598 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~~--~-~~---------------------------~~~~~L~I~~v 598 (1011)
+..+.+.+|++++|.|.+.+. +...+.|+|.... . .. ....+|+|.++
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (253)
T 3liz_H 7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL 86 (253)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence 456788999999999999874 3568999985311 0 00 11234999999
Q ss_pred CCCCCEEEEEEEEecC---CCceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEe-cCCCCeEEEEECCeE
Q psy17146 599 SDDLAGRYYCKASVMG---FPEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRGEE 669 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~---~~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g~~ 669 (1011)
+.+|+|.|.|.+.|.. .......+.|.|. .+|.+. ......+..|+.++|.|.+.| .|.++.++|+++|..
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~ 166 (253)
T 3liz_H 87 KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS 166 (253)
T ss_dssp CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCee
Confidence 9999999999999832 2233445677775 567666 334445668999999999998 676668999999874
Q ss_pred ecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 670 IGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 670 l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
+........ ... ......+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 167 ~~~~~~~~~--~~~-g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~ 218 (253)
T 3liz_H 167 SGVHTFPAV--LQS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVP 218 (253)
T ss_dssp TTEEECCCE--EET-TEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred cceEeCCcc--ccC-CeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecC
Confidence 321110000 000 001123689999999999 9999999999998887777765
No 379
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.58 E-value=1.1e-14 Score=150.74 Aligned_cols=187 Identities=15% Similarity=0.234 Sum_probs=123.6
Q ss_pred cCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCeecCC-------------cccCCCCcceEEeecCCCceeEEEEee
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDFALGP-------------HRNLSGFDRYAMIGSDEEGDYSLEIYP 96 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~~l~~-------------~~~~~~~~r~~i~~~~~~~~~~L~I~~ 96 (1011)
.|..+.+.+|++|+|.|.+.+. ...+.|+|....-.. .......+|+.+..+...+.++|+|.+
T Consensus 6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (226)
T 3mlr_H 6 ESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTT 85 (226)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESS
T ss_pred cCCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECC
Confidence 3557899999999999999752 347999985421100 001122368888876666788999999
Q ss_pred cccCCCceEEEEEEeCCCC-----CcceeeeEEEEEEEcC-CCCCeee-cCCeeeecCCCcEEEEEEccCCCC-CcEEEE
Q psy17146 97 VMLDDDARYQCQVSTGILG-----EPAIRSRFATLTVLVP-PDPPRIV-QGDTLYTTEDREIELECISANGKP-PAEITW 168 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~-----~~~~~s~~~~l~V~~~-p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P-~~~i~W 168 (1011)
++.+|+|.|.|.+.+...+ ........+.|+|... ..+|.+. ..+...+.+|+.+.|.|.+....| .+.+.|
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W 165 (226)
T 3mlr_H 86 LQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW 165 (226)
T ss_dssp CCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE
T ss_pred CCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE
Confidence 9999999999999764200 0011223356777543 3345554 233444568999999999666667 578999
Q ss_pred EeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 169 IDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 169 ~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
++..+..+.............+...+.|.|.+...+| |.|+|.|.|..+..
T Consensus 166 --~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~ 216 (226)
T 3mlr_H 166 --NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 216 (226)
T ss_dssp --GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTE
T ss_pred --CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCc
Confidence 4443332222111112223456667899999999999 99999999987754
No 380
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.58 E-value=3.3e-15 Score=155.26 Aligned_cols=172 Identities=13% Similarity=0.164 Sum_probs=115.2
Q ss_pred ccee-ecCCceEEEcCCCcEEEEEEEecC-CC-C-eEEEEecCCce-ee-------cCC------CcEEEeecCCCCCEE
Q psy17146 544 GPRF-RARPYSVQVDRGAGVNLLCDVDGN-PA-P-EITWIHEDSDK-VV-------GNS------PNLTLLMTSDDLAGR 605 (1011)
Q Consensus 544 ~P~~-~~~p~~~~v~~G~~~~l~C~~~g~-p~-p-~v~W~k~~~~~-~~-------~~~------~~L~I~~v~~~d~G~ 605 (1011)
+|.+ ...|....+.+|+.++|.|.+.|. |. | .+.|+++|..+ .. ..+ ..|+|.++..+|+|.
T Consensus 12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~ 91 (231)
T 2w59_A 12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGER 91 (231)
T ss_dssp CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCC
T ss_pred CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCE
Confidence 4544 355666778899999999999985 64 5 99999998765 11 122 259999999999999
Q ss_pred EEEEEEecCCCceeeEEEEEE----cCCCeee--cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCe
Q psy17146 606 YYCKASVMGFPEVGAEATVYL----KGRPTII--SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDY 678 (1011)
Q Consensus 606 Y~C~a~n~~~~~~s~~~~l~V----~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~ 678 (1011)
|+|.|.|. .+.......+.+ ..+|.+. .+.... ..|..++|.|.+.|. |....|+|+|||+.+........
T Consensus 92 Y~C~~~~~-~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~ 169 (231)
T 2w59_A 92 FTCTVQHE-ELPLPLSKSVYRNTGPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTT 169 (231)
T ss_dssp EEEEEECT-TCSSCEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEEC
T ss_pred EEEEEEcC-CCCCceEEEEecCCCCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccC
Confidence 99999994 333333333332 2467654 222222 235679999999996 43248999999999864320000
Q ss_pred EEecCC--c----Cc-c---ceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 679 SVLEDP--L----KE-G---IKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 679 ~~~~~~--~----~~-~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
....+. . .+ + ..+.|.|.....+|.|.|+|.|.|.....
T Consensus 170 ~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~ 218 (231)
T 2w59_A 170 AVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM 218 (231)
T ss_dssp CCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred ccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence 001100 0 11 2 24678899888889999999999998754
No 381
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.58 E-value=1.1e-14 Score=174.23 Aligned_cols=180 Identities=20% Similarity=0.265 Sum_probs=128.3
Q ss_pred CCceeEEecCcEEEEEEE-cC-CCCeeEEeeCCeecCCcccC------CCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 34 PQDQTAVVGSRVTLPCRV-ID-KTGVLQWTKDDFALGPHRNL------SGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 34 p~~~~v~~G~~v~L~C~v-~~-~~~~v~W~k~~~~l~~~~~~------~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
.+++.+.+|++|+|.|.+ .+ +.+.+.|+|++..+...... ....|..+..+ .+|.|.+++.+|+|.|
T Consensus 373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~L~i~~v~~~D~G~Y 447 (581)
T 3o3u_N 373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPN-----GSLFLPAVGIQDEGIF 447 (581)
T ss_dssp CEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTT-----SCEEESSCCGGGCEEE
T ss_pred hcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCC-----ceEEEeccccccCeEE
Confidence 456889999999999999 33 56699999997633221111 11245555432 2799999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCc-EEEEEEccCCCCCcEEEEEeCCceeeec-eeEEE
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDRE-IELECISANGKPPAEITWIDGTGTVMSN-VRVTE 183 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~-v~L~C~~~~g~P~~~i~W~k~~~~l~~~-~~~~~ 183 (1011)
+|++.+.... ..+..+.|+|..+|..|.+...... +.+|+. +.|.|.+..++|.++++|+|++..+... ..+..
T Consensus 448 ~C~~~n~~~~---~~~~~~~l~V~~~~~~p~i~~~~~~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~ 523 (581)
T 3o3u_N 448 RCQAMNRNGK---ETKSNYRVRVYQIPGKPEIVDSASE-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSV 523 (581)
T ss_dssp EEEEECTTSC---EEEEEEEEEEEBCCCCCEEESCCSE-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEE
T ss_pred EEEEEcCCCc---eeEEEEEEEEEcCCCCCEEEcCCcc-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEE
Confidence 9999985432 2356789999998888888766554 344544 4679995555799999999999887542 11111
Q ss_pred --ee--ecCCceEEEEEEEEEeecc-CcCCcEEEEEEEeCCCCc
Q psy17146 184 --EA--SVDGRRTTVKSTLVLTPKK-EHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 184 --~~--~~~~~~~~~~~~L~I~~~~-~~d~G~Y~C~a~n~~g~~ 222 (1011)
.. ..+...+...++|.|.+++ .++.|.|+|.|.|.....
T Consensus 524 ~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~ 567 (581)
T 3o3u_N 524 KEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH 567 (581)
T ss_dssp EEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred EeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence 11 1144567778899999998 566899999999986543
No 382
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.58 E-value=5.3e-15 Score=155.82 Aligned_cols=169 Identities=18% Similarity=0.310 Sum_probs=102.1
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecCCc--ee-----------------------e-----cCCCcEEEeec
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDSD--KV-----------------------V-----GNSPNLTLLMT 598 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~~--~~-----------------------~-----~~~~~L~I~~v 598 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|.... .. . ....+|+|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (257)
T 3bn9_D 7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL 86 (257)
T ss_dssp ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence 4456799999999999999876 678999986421 10 0 11247999999
Q ss_pred CCCCCEEEEEEEEecCCC-------------ceeeEEEEEEcC----CCeeec-CCceeeecCCcEEEEEEEEec-CCCC
Q psy17146 599 SDDLAGRYYCKASVMGFP-------------EVGAEATVYLKG----RPTIIS-HRTQFGIPGDTARVECSAFSI-PPPE 659 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~~-------------~~s~~~~l~V~~----~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~ 659 (1011)
+.+|+|.|.|.+.|. .+ .....+.|.|.. +|.+.. .+...+..|+.++|.|.+.|. |.|+
T Consensus 87 ~~~DsG~Y~C~~~~~-~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi 165 (257)
T 3bn9_D 87 RAEDTAVYYCARPYL-TYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV 165 (257)
T ss_dssp CGGGCEEEEEEEECC-SSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCC
T ss_pred ChhhCEEEEEEEecC-CCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCc
Confidence 999999999999983 22 122345788864 566653 233346789999999999987 7776
Q ss_pred eEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 660 KVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 660 ~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
.|+|+++|..+....... ....+ ......+.|.|.+...+| |.|+|.|.|..+.......+
T Consensus 166 ~v~W~k~g~~~~~~~~~~-~~~~~-g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~~i 226 (257)
T 3bn9_D 166 TVSWNSGALTSGVHTFPA-VLQSS-GLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 226 (257)
T ss_dssp EEEETTTTCCSSCEECCC-EECTT-SCEEEEEECCCC--------CEEEEEEEGGGTEEEEEEE
T ss_pred EEEEeeCCCcCCcEecCC-eEcCC-CCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEEEEE
Confidence 899999998643211110 11110 001124678999888878 99999999977655544444
No 383
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.58 E-value=7.1e-15 Score=153.68 Aligned_cols=169 Identities=17% Similarity=0.232 Sum_probs=112.7
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc--e---------------------ee----cCCCcEEEeecC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD--K---------------------VV----GNSPNLTLLMTS 599 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~--~---------------------~~----~~~~~L~I~~v~ 599 (1011)
+...|..+.+.+|++++|.|.+. .+.+.+.|+|++.. . .. ....+|+|.+++
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~ 80 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT 80 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence 34567788999999999999995 46789999987421 1 00 122479999999
Q ss_pred CCCCEEEEEEEEecC----CCceeeEEEEEEcC------CCeee--cCCceeeecCCcEEEEEEEEec-CCCCeEEEEEC
Q psy17146 600 DDLAGRYYCKASVMG----FPEVGAEATVYLKG------RPTII--SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYR 666 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~----~~~~s~~~~l~V~~------~P~i~--~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~ 666 (1011)
.+|+|.|.|.+.|.. .........|.|.. +|.+. .+....+..|+.++|.|.+.|. |.+..|.|++|
T Consensus 81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~ 160 (238)
T 1bec_A 81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN 160 (238)
T ss_dssp GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEET
T ss_pred cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEEC
Confidence 999999999999832 11122334677754 66665 2334456689999999999997 65558999999
Q ss_pred CeEecccCCC--CeEEecCCcCccceeEEEEcCCCCCC-CEEEEEEEEcCCCCe
Q psy17146 667 GEEIGVGSSD--DYSVLEDPLKEGIKSTLIIRESRHDH-FGVYNCSVSNPYGSD 717 (1011)
Q Consensus 667 g~~l~~~~~~--~~~~~~~~~~~~~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~~ 717 (1011)
|..+..+... ......+ ......+.|.|......| .|.|+|.|.|.....
T Consensus 161 g~~~~~~~~~~~~~~~~~~-g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~ 213 (238)
T 1bec_A 161 GKEVHSGVSTDPQAYKESN-YSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSE 213 (238)
T ss_dssp TEEECTTEEECSSCEEEET-TEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCT
T ss_pred CEECCCceecccceEeCCC-CCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCC
Confidence 9998642110 1110110 000123456666555544 678999999985443
No 384
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.58 E-value=3.5e-15 Score=152.35 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=101.8
Q ss_pred cCCCcEEEEEEEecCCC----CeEEEEecCCcee--------ecCCCcEEEee---cCCC---CCEEEEEEEEecCCCce
Q psy17146 557 DRGAGVNLLCDVDGNPA----PEITWIHEDSDKV--------VGNSPNLTLLM---TSDD---LAGRYYCKASVMGFPEV 618 (1011)
Q Consensus 557 ~~G~~~~l~C~~~g~p~----p~v~W~k~~~~~~--------~~~~~~L~I~~---v~~~---d~G~Y~C~a~n~~~~~~ 618 (1011)
.+|++++|.|.+.|.++ +.|.|+|++..+. ...++.|.+.. +... |+|.|+|.|.|. .+..
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~-~~~~ 94 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNK-ALPA 94 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECT-TSSS
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcC-cCCc
Confidence 78999999999998763 4999999985432 12345666543 2344 499999999994 3333
Q ss_pred --eeEEEE--EEcCCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeE
Q psy17146 619 --GAEATV--YLKGRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKST 692 (1011)
Q Consensus 619 --s~~~~l--~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 692 (1011)
+..+.+ .+..+|.+.. +.......|..++|.|.+.|. |.+..|+|+|||..+......++....+ ......+.
T Consensus 95 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~-gt~~~~s~ 173 (207)
T 1l6x_A 95 PIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD-GSFFLYSK 173 (207)
T ss_dssp CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTT-SCEEEEEE
T ss_pred ceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCC-CCEEEEEE
Confidence 333322 4566787652 222222356679999999996 5444899999999886311111111111 00012345
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 693 LIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 693 L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
|.|......|.|.|+|.|.|....
T Consensus 174 l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 174 LTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp EEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEECHHHcCCCCEEEEEEEcCCcC
Confidence 677776667899999999998764
No 385
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.57 E-value=9.9e-15 Score=149.93 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=111.7
Q ss_pred CceEEEcCCCcEEEEEEEecCC--CCeEEEEecC--Cce----------------------eec-----CCCcEEEeecC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNP--APEITWIHED--SDK----------------------VVG-----NSPNLTLLMTS 599 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~--~~~----------------------~~~-----~~~~L~I~~v~ 599 (1011)
|..+.+.+|++++|.|.+.+.+ .+.+.|+|+. ... ... ...+|+|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ 86 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence 5567899999999999999875 5789999863 111 000 12389999999
Q ss_pred CCCCEEEEEEEEecCCC--ceeeEEEEEEcC----CCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEec
Q psy17146 600 DDLAGRYYCKASVMGFP--EVGAEATVYLKG----RPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIG 671 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~~--~~s~~~~l~V~~----~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~ 671 (1011)
.+|+|.|.|.+.|.... .....+.|.|.. +|.|. .++...+..|+.++|.|.+.|. |.|+.|+|+++|..+.
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~ 166 (215)
T 1c5d_H 87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSD 166 (215)
T ss_dssp GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCS
T ss_pred cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCc
Confidence 99999999999984211 223446777763 46555 2333346789999999999997 7776899999987643
Q ss_pred ccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEE
Q psy17146 672 VGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIML 723 (1011)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 723 (1011)
.... .. .... ......+.|. ....+| |.|+|.|.|..|.......+
T Consensus 167 ~~~~-~~-~~~~-g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~~~~ 212 (215)
T 1c5d_H 167 VHTF-PA-VLQS-GLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVDKKL 212 (215)
T ss_dssp CCBC-CC-EEET-TEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred eEec-Cc-ccCC-CCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEEEec
Confidence 2111 11 1110 0000123344 444456 99999999999987655443
No 386
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A
Probab=99.57 E-value=2.5e-14 Score=157.10 Aligned_cols=232 Identities=15% Similarity=0.096 Sum_probs=143.9
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCC-CCeEEEEecCCce------eecCCCcEEEeecCCCCCEEEEEEEEecCCCc
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNP-APEITWIHEDSDK------VVGNSPNLTLLMTSDDLAGRYYCKASVMGFPE 617 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p-~p~v~W~k~~~~~------~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~ 617 (1011)
+.+..++..+.+..|++++|.|.+.+.+ .+.|.|++++..+ ....++.|.|.++..+|+|.|+|.+ .|.
T Consensus 7 ~~~~~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~----~g~ 82 (325)
T 1n26_A 7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR----AGR 82 (325)
T ss_dssp CCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEES----SSS
T ss_pred CccccCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEEe----CCE
Confidence 3445556666678999999999998765 7899999987542 2234588999999999999999993 456
Q ss_pred eeeEEEEEEcCCCeeecCCceeee-cCCcEEEEEEEEecC---CCCe--EEEEEC-CeEecccCCCCeEEecCCcCccce
Q psy17146 618 VGAEATVYLKGRPTIISHRTQFGI-PGDTARVECSAFSIP---PPEK--VTWSYR-GEEIGVGSSDDYSVLEDPLKEGIK 690 (1011)
Q Consensus 618 ~s~~~~l~V~~~P~i~~~~~~~v~-~G~~v~L~C~~~g~p---~p~~--v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~ 690 (1011)
....+.|.|..+|.-. . .... .+....+.|.-.... .+.. +.|.+. +.. ...+...-........
T Consensus 83 ~~~~~~L~V~~pP~~P--~-l~c~~~~~~~~~~c~W~~~~~~~~~~~y~l~~~~~~~~~-----~~~~~~~c~~~~~~~~ 154 (325)
T 1n26_A 83 PAGTVHLLVDVPPEEP--Q-LSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSP-----AEDFQEPCQYSQESQK 154 (325)
T ss_dssp CSCEEEEEECCCCCCC--C-CEEEBSSTTSCEEEEECCSSCCCTTCEEEEEEEEESSSS-----CEEEEEEEEEETTTTE
T ss_pred EeeeEEEEeccCCCCC--c-eeEEeecCCCcEEEEECCCCCCCCCceEEEEEEEccCCC-----CCcccccCCCCCCCCC
Confidence 7788999999887521 1 1111 222223444332110 0111 111111 100 0000000000001223
Q ss_pred eEEEEcCCC-CCCCEEEEEEEEcCCCCeE-EEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCCCCCc
Q psy17146 691 STLIIRESR-HDHFGVYNCSVSNPYGSDS-VEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGI 768 (1011)
Q Consensus 691 ~~L~I~~~~-~~d~G~Y~C~a~N~~G~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~ 768 (1011)
.++.|..+. ....+.|+|.|.|.+|... ....+.+.. ..++.||.++.
T Consensus 155 ~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~------------------------------~v~P~pP~~l~ 204 (325)
T 1n26_A 155 FSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCG------------------------------ILQPDPPANIT 204 (325)
T ss_dssp EEEEECCCTTCCCEEEEEEEEEETTEEEECCCEEEETTT------------------------------CBCCCCCEEEE
T ss_pred EEEEECCCcccCcEEEEEEEEEcCCCCcccCcEEEeecc------------------------------ccCCCCCcceE
Confidence 466777664 4567788999999999753 233333211 12344888888
Q ss_pred cccccc--ccccccc-cCCC--CCCCCcCcceeeecCcc--------------------cccccccc---c---CCCCCC
Q psy17146 769 EHHVTA--DGEKNQC-KESD--NSSNISDIKLEFRTGSS--------------------VSNVHLDY---A---GHDSET 817 (1011)
Q Consensus 769 ~~~~~~--~s~~~~W-~~~d--~~s~I~~Y~ve~~~~~~--------------------~p~~~Y~f---A---~G~g~~ 817 (1011)
+..+.. .++.|+| ++.+ .+.++.+|.|+||.... .|+++|+| | .|.|.+
T Consensus 205 v~~~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~~~~~~W~~~~~~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~ 284 (325)
T 1n26_A 205 VTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEW 284 (325)
T ss_dssp EEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEECGGGCSEEEESSCCTTCCEEEEEEEEETTTBSCC
T ss_pred EEEecCCCCEEEEEECCCCccCCCcEeEEEEEEEEeCCCCCCEEEcccCCceEEEEeCCCCCCeEEEEEEEecCCCCCCC
Confidence 887653 5899999 4444 46689999999987532 78889999 5 688888
Q ss_pred C
Q psy17146 818 G 818 (1011)
Q Consensus 818 s 818 (1011)
|
T Consensus 285 S 285 (325)
T 1n26_A 285 S 285 (325)
T ss_dssp C
T ss_pred c
Confidence 7
No 387
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.57 E-value=2.1e-14 Score=171.81 Aligned_cols=163 Identities=18% Similarity=0.245 Sum_probs=121.2
Q ss_pred ceEEEcCCCcEEEEEEE-ecCCCCeEEEEecCCc------------------eeecCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 552 YSVQVDRGAGVNLLCDV-DGNPAPEITWIHEDSD------------------KVVGNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~-~g~p~p~v~W~k~~~~------------------~~~~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
....+.+|++++|.|.+ .+.|.+.++|+|++.. .....+++|.|.+++.+|+|.|+|.|.|
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n 453 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN 453 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence 45778999999999999 8899999999998752 2233457899999999999999999999
Q ss_pred cCCCce-eeEEEEEEcCC---CeeecCCceeeecCCc-EEEEEEEEe-cCCCCeEEEEECCeEecccCCCCeEEecCCc-
Q psy17146 613 MGFPEV-GAEATVYLKGR---PTIISHRTQFGIPGDT-ARVECSAFS-IPPPEKVTWSYRGEEIGVGSSDDYSVLEDPL- 685 (1011)
Q Consensus 613 ~~~~~~-s~~~~l~V~~~---P~i~~~~~~~v~~G~~-v~L~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~- 685 (1011)
. .+.. ...+.|.|..+ |.|...... +..|+. +.|.|.+.+ .|.| .|+|++||+++.. ...++.+.....
T Consensus 454 ~-~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~~~~~~~l~C~~~~~~P~~-~i~W~~~g~~l~~-~~~~~~~~~~~~~ 529 (581)
T 3o3u_N 454 R-NGKETKSNYRVRVYQIPGKPEIVDSASE-LTAGVPNKVGTCVSEGSYPAG-TLSWHLDGKPLVP-NEKGVSVKEQTRR 529 (581)
T ss_dssp T-TSCEEEEEEEEEEEBCCCCCEEESCCSE-ECTTSCEEEEEEEEEEEBSCC-EEEEEETTEECCT-TSTTEEEEEEEEE
T ss_pred C-CCceeEEEEEEEEEcCCCCCEEEcCCcc-cccCCceeEEEEECCCCCCCC-eEEEEECCEECCC-CCCeEEEEeeeEE
Confidence 4 4444 77888988764 455544443 445544 567999998 5888 9999999999975 233333321111
Q ss_pred -----CccceeEEEEcCCC-CCCCEEEEEEEEcCCCCeE
Q psy17146 686 -----KEGIKSTLIIRESR-HDHFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 686 -----~~~~~~~L~I~~~~-~~d~G~Y~C~a~N~~G~~~ 718 (1011)
.....++|.|..+. .++.|.|+|.|+|.++...
T Consensus 530 ~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~~ 568 (581)
T 3o3u_N 530 HPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHR 568 (581)
T ss_dssp CTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSSC
T ss_pred cCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCCC
Confidence 11235789999998 4447899999999986543
No 388
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.56 E-value=2.7e-14 Score=150.76 Aligned_cols=169 Identities=21% Similarity=0.320 Sum_probs=112.6
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC------------------------ceeecCCCc--EEEeecCCC
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS------------------------DKVVGNSPN--LTLLMTSDD 601 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~------------------------~~~~~~~~~--L~I~~v~~~ 601 (1011)
...|..+.+.+|++++|.|.+.+.+.+.+.|+|... +........ |+|.+++.+
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~ 84 (253)
T 3to4_D 5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS 84 (253)
T ss_dssp EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCS
T ss_pred EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChh
Confidence 345678889999999999999999999999998421 111111111 999999999
Q ss_pred CCEEEEEEEEecCCC-----ceeeEEEEEEc------CCCeeec--CCceeeecCCcEEEEEEEEe-cCCCCeEEEEECC
Q psy17146 602 LAGRYYCKASVMGFP-----EVGAEATVYLK------GRPTIIS--HRTQFGIPGDTARVECSAFS-IPPPEKVTWSYRG 667 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~~-----~~s~~~~l~V~------~~P~i~~--~~~~~v~~G~~v~L~C~~~g-~p~p~~v~W~~~g 667 (1011)
|+|.|.|.+.+...+ .......|.|. .+|.+.. +....+..|+.++|.|.+.| .|.++.++|++||
T Consensus 85 DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g 164 (253)
T 3to4_D 85 QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 164 (253)
T ss_dssp SCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred hCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECC
Confidence 999999999973221 22233466664 4565542 23333446789999999999 4656589999999
Q ss_pred eEecccCCCC-eEEecC-CcCcc---ceeEEEEcCCCCCC-CEEEEEEEEcCCCC
Q psy17146 668 EEIGVGSSDD-YSVLED-PLKEG---IKSTLIIRESRHDH-FGVYNCSVSNPYGS 716 (1011)
Q Consensus 668 ~~l~~~~~~~-~~~~~~-~~~~~---~~~~L~I~~~~~~d-~G~Y~C~a~N~~G~ 716 (1011)
..+....... ...... ...++ ..+.|.|.....+| .|.|+|.|.|..-.
T Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~ 219 (253)
T 3to4_D 165 KEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (253)
T ss_dssp EEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCC
Confidence 9986421000 000000 00112 23678888888777 77999999998543
No 389
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.56 E-value=7.2e-15 Score=152.72 Aligned_cols=183 Identities=19% Similarity=0.258 Sum_probs=119.1
Q ss_pred ccce-eecCCceeEEecCcEEEEEEEcC--C-CC-eeEEeeCCeec-CCcccCCCCcceEEeecCC--CceeEEEEeecc
Q psy17146 27 EQKF-AMEPQDQTAVVGSRVTLPCRVID--K-TG-VLQWTKDDFAL-GPHRNLSGFDRYAMIGSDE--EGDYSLEIYPVM 98 (1011)
Q Consensus 27 ~p~~-~~~p~~~~v~~G~~v~L~C~v~~--~-~~-~v~W~k~~~~l-~~~~~~~~~~r~~i~~~~~--~~~~~L~I~~v~ 98 (1011)
+|.+ ...|..+.+.+|++++|.|.+.+ + .+ .+.|+++|..+ .... .......+. ....+|+|.+++
T Consensus 12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~------~~~~~~~~g~~~~~s~L~I~~~~ 85 (231)
T 2w59_A 12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDP------MVLQEHFNGTYSASSAVPVSTQD 85 (231)
T ss_dssp CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCC------CEEEECTTSCEEEEEEEECCHHH
T ss_pred CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeecccccc------ccceECCCCcEEEEEEEEecchh
Confidence 3444 46788888899999999999987 4 34 99999998766 2111 111010100 023479999999
Q ss_pred cCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC---CCCCeee--cCCeeeecCCCcEEEEEEccCCCC-CcEEEEEeCC
Q psy17146 99 LDDDARYQCQVSTGILGEPAIRSRFATLTVLVP---PDPPRIV--QGDTLYTTEDREIELECISANGKP-PAEITWIDGT 172 (1011)
Q Consensus 99 ~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~---p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P-~~~i~W~k~~ 172 (1011)
.+|+|.|+|.+.+.... ..+.+.|... ..+|.+. .+....+ .++.+.|.|.+.+..| .++|+|+||+
T Consensus 86 ~~D~g~Y~C~~~~~~~~------~~~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g 158 (231)
T 2w59_A 86 WLSGERFTCTVQHEELP------LPLSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDH 158 (231)
T ss_dssp HHTTCCEEEEEECTTCS------SCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred ccCCCEEEEEEEcCCCC------CceEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECC
Confidence 99999999999985421 2244555432 1233332 2222222 3557999999554456 4799999999
Q ss_pred ceeeeceeEEE--eee--------cCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 173 GTVMSNVRVTE--EAS--------VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 173 ~~l~~~~~~~~--~~~--------~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..+..+..... ... .++..+...+.|.|.....+|+|.|+|.|.|.....
T Consensus 159 ~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~ 218 (231)
T 2w59_A 159 RAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM 218 (231)
T ss_dssp EECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred EECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence 88765431111 111 231355666889999999999999999999987654
No 390
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.55 E-value=4.7e-14 Score=148.83 Aligned_cols=173 Identities=19% Similarity=0.264 Sum_probs=116.3
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCc-----------------------eee----cCCCcEEEee
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSD-----------------------KVV----GNSPNLTLLM 597 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~-----------------------~~~----~~~~~L~I~~ 597 (1011)
+.+...|..+.+.+|++++|.|.+. .+.+.+.|+|+... ... ....+|+|.+
T Consensus 4 ~~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~ 82 (252)
T 1oga_E 4 GGITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTS 82 (252)
T ss_dssp -CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECS
T ss_pred ccceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECc
Confidence 3456678889999999999999995 45789999986411 111 1235899999
Q ss_pred cCCCCCEEEEEEEEecC--CCceeeEEEEEEc------CCCeeec--CCceeeecCCcEEEEEEEEec-CCCCeEEEEEC
Q psy17146 598 TSDDLAGRYYCKASVMG--FPEVGAEATVYLK------GRPTIIS--HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYR 666 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~--~~~~s~~~~l~V~------~~P~i~~--~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~ 666 (1011)
++.+|+|.|.|.+.|.. .........|.|. .+|.+.. +....+..|+.++|.|.+.|. |.+..|+|+||
T Consensus 83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~ 162 (252)
T 1oga_E 83 AQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN 162 (252)
T ss_dssp CCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred CChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEEC
Confidence 99999999999999831 1112233456664 3676652 333345679999999999986 65458999999
Q ss_pred CeEecccCCCC-eEEec-CCcCcc---ceeEEEEcCCCCC-CCEEEEEEEEcCCCCeE
Q psy17146 667 GEEIGVGSSDD-YSVLE-DPLKEG---IKSTLIIRESRHD-HFGVYNCSVSNPYGSDS 718 (1011)
Q Consensus 667 g~~l~~~~~~~-~~~~~-~~~~~~---~~~~L~I~~~~~~-d~G~Y~C~a~N~~G~~~ 718 (1011)
|+.+..+.... ..... ....++ ..+.|.|...... |.|.|+|.|.|..+...
T Consensus 163 g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~ 220 (252)
T 1oga_E 163 GKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 220 (252)
T ss_dssp TEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence 99886421100 00000 000122 2456888877654 57899999999987554
No 391
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.55 E-value=3.7e-14 Score=144.40 Aligned_cols=180 Identities=14% Similarity=0.214 Sum_probs=115.0
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcc------cCCCCcceEEeec-CCCceeEEEEeecccCC
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHR------NLSGFDRYAMIGS-DEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~------~~~~~~r~~i~~~-~~~~~~~L~I~~v~~~D 101 (1011)
.+...|..+.+.+|++|+|.|.+....+.+.|+|......... .....+|+.+..+ ...+.++|+|.+++.+|
T Consensus 3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D 82 (207)
T 1ypz_E 3 QVEQSPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED 82 (207)
T ss_dssp SEEESCSEEEEETTCCEEEEEEESSCCSEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred ccEECCCeEEEccCCcEEEEEEEeCCCeEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence 3566788999999999999999987656899998642110000 0012468888765 44677899999999999
Q ss_pred CceEEEEEEeCCCC-------CcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCCc
Q psy17146 102 DARYQCQVSTGILG-------EPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPP-AEITWIDGTG 173 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~-------~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~ 173 (1011)
+|.|.|.+.+.... ........+.|+|...... ...+.+.+..+ .+.|.|.+.+..|. +.++|+++ .
T Consensus 83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~---~~~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~ 157 (207)
T 1ypz_E 83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQP---PAKPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS-K 157 (207)
T ss_dssp CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCC---CCCCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-S
T ss_pred CEEEEEEEecCCcccccccccceeeecCccEEEEccCCCC---CCCCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-C
Confidence 99999999875310 0112233468888753211 11122222222 37999996556676 79999999 7
Q ss_pred eeeeceeEEEeeecCCceEEEEEEEEE-eeccCcCCcEEEEEEEeCCCC
Q psy17146 174 TVMSNVRVTEEASVDGRRTTVKSTLVL-TPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~L~I-~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
.+...... .....++. +.+ .....+|.|.|+|.|.|..+.
T Consensus 158 ~l~~~~~~-~~~~~~g~-------y~~~~~~~~~~~~~ytC~v~~~~~~ 198 (207)
T 1ypz_E 158 KIVEFDPA-IVISPSGK-------YSAVKLGQYGDSNSVTCSVQHNSET 198 (207)
T ss_dssp EEEECCCE-EEECTTSS-------EEEEECEEESSTTTCEEEEEETTEE
T ss_pred cccCCccc-eEEcCCCc-------EEEEEeecccCCCcEEEEEEECCcc
Confidence 66543221 11233332 222 223347889999999998653
No 392
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.54 E-value=1.5e-14 Score=147.53 Aligned_cols=182 Identities=15% Similarity=0.245 Sum_probs=107.2
Q ss_pred cceeecCCceeE--EecCcEEEEEEEcCC-----CCeeEEeeCCeecCCcccCCCCcceEEeecCCCcee----EEEEee
Q psy17146 28 QKFAMEPQDQTA--VVGSRVTLPCRVIDK-----TGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDY----SLEIYP 96 (1011)
Q Consensus 28 p~~~~~p~~~~v--~~G~~v~L~C~v~~~-----~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~----~L~I~~ 96 (1011)
|.+.+.|....+ .+|++++|.|.+.+. ...|.|+|++..+..... .+.... ..+.+ .|.|..
T Consensus 2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~----~~~~~~---~~g~~~~~~~l~i~~ 74 (207)
T 1l6x_A 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT----KPREEQ---YNSTYRVVSVLTVLH 74 (207)
T ss_dssp CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEE----CCCEEC---TTSCEEEEEEEECCH
T ss_pred CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCccc----CCceec---cCCcEEEEEEEEEEH
Confidence 344444444434 799999999999873 238999999977642210 011111 11221 244444
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEE-EcCCCCCeee--cCCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCC
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTV-LVPPDPPRIV--QGDTLYTTEDREIELECISANGKPP-AEITWIDGT 172 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V-~~~p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~ 172 (1011)
...+|+|.|+|.+.+..... .....+.+ .....+|.+. ......+ +|+.+.|.|.+.+.+|+ ++++|+|++
T Consensus 75 ~d~~d~g~Y~C~a~n~~~~~----~~~~~v~~~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g 149 (207)
T 1l6x_A 75 QDWLNGKEYKCKVSNKALPA----PIEKTISKAKGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNG 149 (207)
T ss_dssp HHHHTTCCEEEEEECTTSSS----CEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred HHccCCceEEEEEEcCcCCc----ceEEEeccCCCCCcCCEEEEECCChHHh-cCCcEEEEEEEeCeECCCeEEEEEECC
Confidence 55556999999999864321 11122211 0122334332 2222223 45669999995444665 499999998
Q ss_pred ceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 173 GTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..+............++ .+...+.|.|.....+|.|.|+|.|.|.....
T Consensus 150 ~~~~~~~~~~~~~~~~g-t~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~ 198 (207)
T 1l6x_A 150 QPENNYKTTPPVLDSDG-SFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN 198 (207)
T ss_dssp EEECCEEECCCEECTTS-CEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred eeccCccccCceECCCC-CEEEEEEEEECHHHcCCCCEEEEEEEcCCcCC
Confidence 87753222111122333 45566788888888889999999999986644
No 393
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.53 E-value=3.6e-13 Score=131.69 Aligned_cols=162 Identities=16% Similarity=0.239 Sum_probs=116.8
Q ss_pred eeecCCceeEEecCcEEEEEEEcCCCCe-eEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEE
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQ 108 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~~~~-v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 108 (1011)
+.+.|++..|.+|++++|+|++..+.+. +.|... +. +.. ..+...+...|.|.+|+. | |.|.|.
T Consensus 2 v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~---l~---------~~~-~~~~~~~~~~l~l~~vs~-~-g~y~C~ 66 (185)
T 1iam_A 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETP---LP---------KKE-LLLPGNNRKVYELSNVQE-D-SQPMCY 66 (185)
T ss_dssp EEEESSEEEEETTEEEEEEEEECSSSCSEEEEECS---SC---------EEE-ECSSSSSEEEEEEEEECS-C-BCCEEE
T ss_pred eEEECCCcEEeCCCCEEEEEEccCCCCccceEEee---CC---------Ccc-EeccCCceeEEEEEecCc-C-CEEEEE
Confidence 5678899999999999999999877665 777632 10 000 101112334689999983 4 999999
Q ss_pred EEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCc--EEEEEeCCceeeeceeEEEeee
Q psy17146 109 VSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPA--EITWIDGTGTVMSNVRVTEEAS 186 (1011)
Q Consensus 109 ~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~--~i~W~k~~~~l~~~~~~~~~~~ 186 (1011)
+.... ...+..+.|+|+.+|..+.|...+ ..+.+|+.++|+|.+.++.|.. .|+|||++.++.... ..
T Consensus 67 ~~c~~----~~~~~~~~l~V~~~P~~v~i~~~~-~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~-----~~ 136 (185)
T 1iam_A 67 SNCPD----GQSTAKTFLTVYWTPERVELAPLP-SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP-----AV 136 (185)
T ss_dssp EECSS----CEEEEECEEEEEBCCSEEEECCCC-SEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-----CC
T ss_pred EECCC----CceEEEEEEEEeCCCCCCEEccCC-ccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc-----CC
Confidence 86542 246788999999998887776553 3477899999999988888875 589999998885532 11
Q ss_pred cCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 187 VDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 187 ~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
... ...+|++.....+|...|+|+|.|..+
T Consensus 137 ~~~----~~~tl~~~~~reD~g~~~sC~A~~~l~ 166 (185)
T 1iam_A 137 GEP----AEVTTTVLVRRDHHGAQFSCRTELDLR 166 (185)
T ss_dssp TTT----EEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred Ccc----ccEEEEEeceeccCCCeEEEEEEecCc
Confidence 111 123688777777777799999999876
No 394
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.53 E-value=1.5e-14 Score=150.25 Aligned_cols=123 Identities=18% Similarity=0.194 Sum_probs=77.4
Q ss_pred cEEEeecCCCCCEEEEEEEEecCC-CceeeEEEE--EEcCCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEEC
Q psy17146 592 NLTLLMTSDDLAGRYYCKASVMGF-PEVGAEATV--YLKGRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYR 666 (1011)
Q Consensus 592 ~L~I~~v~~~d~G~Y~C~a~n~~~-~~~s~~~~l--~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~ 666 (1011)
.|.|.....+|.|.|+|+|.|... ......+.+ .+..+|.+.. +.......|+.++|.|.+.|. |.++.++|+||
T Consensus 90 ~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~ 169 (240)
T 4acp_A 90 VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESN 169 (240)
T ss_dssp EEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred EEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEEC
Confidence 466666677889999999998432 223344432 2456777763 222223358999999999995 55568999999
Q ss_pred CeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 667 GEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 667 g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
|+.+............+ ......+.|.|......|.|.|+|.|.|..-
T Consensus 170 g~~~~~~~~~~~~~~~d-gt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 170 GQPENNYKATPPVLDSD-GSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp TEECSSEEECCCEECTT-SCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred CEECCCcCccCceECCC-CCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence 99875211111111110 0011245777777666788999999999864
No 395
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.52 E-value=6.4e-14 Score=146.40 Aligned_cols=172 Identities=19% Similarity=0.300 Sum_probs=115.5
Q ss_pred CceEEEcCCCcEEEEEEEecCCC----CeEEEEecCCc---e----ee----------------------------cCCC
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGNPA----PEITWIHEDSD---K----VV----------------------------GNSP 591 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~p~----p~v~W~k~~~~---~----~~----------------------------~~~~ 591 (1011)
|..+.+.+|++++|.|.+.+.+. ..+.|+|.... . .. ....
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 86 (239)
T 3tv3_H 7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV 86 (239)
T ss_dssp ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence 44677899999999999998764 48999985311 0 00 1123
Q ss_pred cEEEeecCCCCCEEEEEEEEecCC------------CceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEe
Q psy17146 592 NLTLLMTSDDLAGRYYCKASVMGF------------PEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFS 654 (1011)
Q Consensus 592 ~L~I~~v~~~d~G~Y~C~a~n~~~------------~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g 654 (1011)
+|+|.+++.+|+|.|.|.+.+... ........|.|. .+|.+. ......+..|+.++|.|.+.+
T Consensus 87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~ 166 (239)
T 3tv3_H 87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKD 166 (239)
T ss_dssp EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEE
T ss_pred EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEee
Confidence 599999999999999999987311 112233456664 356665 344445667999999999998
Q ss_pred c-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 655 I-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 655 ~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
. |.++.+.|+++|..+........ ..........+.|.|......| |.|+|.|.|..+.......|.+
T Consensus 167 ~~p~~~~v~W~~~g~~~~~~~~~~~--~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 235 (239)
T 3tv3_H 167 YFPEPVTVSWNSGALTSGVHTFPAV--LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 235 (239)
T ss_dssp EBSSCCEEEEGGGTBCTTEEECCCE--ECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred EeCCCeEEEEEECCccCceEecCce--ECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence 5 55656899999875432111111 1100001124689999998888 9999999999988877777765
No 396
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.52 E-value=3.2e-14 Score=147.71 Aligned_cols=167 Identities=16% Similarity=0.167 Sum_probs=113.0
Q ss_pred eecCCceEEEcCCCcEEEEEEEecC--CCCeEEEEecCC--ce----------------------eec-----CCCcEEE
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDS--DK----------------------VVG-----NSPNLTL 595 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~--~~----------------------~~~-----~~~~L~I 595 (1011)
+...|..+.+.+|++++|.|.+.+. +.+.+.|+|... .. ... ...+|+|
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (230)
T 1ypz_F 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (230)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence 4556788899999999999999875 667899998631 10 000 1237999
Q ss_pred eecCCCCCEEEEEEEEecC--C-CceeeEEEEEEc---------CCCe--eecCCceeeecCCcEEEEEEEEec-CCCCe
Q psy17146 596 LMTSDDLAGRYYCKASVMG--F-PEVGAEATVYLK---------GRPT--IISHRTQFGIPGDTARVECSAFSI-PPPEK 660 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~--~-~~~s~~~~l~V~---------~~P~--i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~ 660 (1011)
.+++.+|+|.|.|.+.+.+ . ......+.|.|. .+|. +..+....+..|+.++|.|.+.|. |.+..
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~ 163 (230)
T 1ypz_F 84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIR 163 (230)
T ss_dssp CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCE
T ss_pred CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeE
Confidence 9999999999999999731 1 112234567775 1233 333344446679999999999987 76459
Q ss_pred EEEEE-CCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCe
Q psy17146 661 VTWSY-RGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 661 v~W~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~ 717 (1011)
|+|++ ||+.+......... ..+ ......+.|.|..... | |.|+|.|.|..+..
T Consensus 164 v~W~~~~g~~l~~~~~~~~~-~~~-~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~ 217 (230)
T 1ypz_F 164 VYWKEKDGNTILDSQEGDTL-KTN-DTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG 217 (230)
T ss_dssp EEEECTTSSCBCCCEECCCE-EET-TEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT
T ss_pred EEEEccCCeEccccccceee-cCC-CCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC
Confidence 99999 88776521111111 110 0011246899988876 4 89999999998753
No 397
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.52 E-value=4.5e-14 Score=147.16 Aligned_cols=130 Identities=14% Similarity=0.207 Sum_probs=78.6
Q ss_pred ecCCCcEEEEEEccCCC---CCc-EEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 145 TTEDREIELECISANGK---PPA-EITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 145 v~eg~~v~L~C~~~~g~---P~~-~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
+.+|+.+.|.|.+. +. |.+ .++|+|+++.+....... .....+..+...+.|.|.+++.+|+|.|+|.|.|..+
T Consensus 29 v~~G~~v~L~C~~~-g~~~~P~~~~v~W~k~~~~~~~~~~~~-~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~ 106 (239)
T 1i1c_A 29 LGGGLTPKVTCVVV-DISQNDPEVRFSWFIDDVEVHTAQTHA-PEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAF 106 (239)
T ss_dssp TTSSSCCEEEEEEE-EECTTCCCCEEEEEESSCEECCCEECC-CEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSS
T ss_pred cccCCcEEEEEEEe-cCccCCCCCEEEEEECCccccCccccc-ceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccC
Confidence 67899999999954 54 766 999999987765432211 1112233445567899999999999999999999888
Q ss_pred CceeEEEEEE--EEEeCCceEEEecCcceeecCceEEEEEEcccCCC-ccEEEEEeCCcc
Q psy17146 221 RTYKVARLKL--LVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPS-HMKYRWYINDQP 277 (1011)
Q Consensus 221 ~~~~s~~v~v--~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~-~~~i~W~~~~~~ 277 (1011)
.......+.+ .+..+|.+.+....... ..|+.++|.|.+.+.++ ...++|++||++
T Consensus 107 ~~~~~~~v~~~~~~~~~P~v~v~~~~~~~-~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~ 165 (239)
T 1i1c_A 107 PAPIEKSISKPEGTPRGPQVYTMAPPKEE-MTQSQVSITCMVKGFYPPDIYTEWKMNGQP 165 (239)
T ss_dssp SSCEEEEECCCSSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred CCCcEEEEecCCCCCcCCEEEEECCChHH-hcCCcEEEEEEEeeeECCCeEEEEEECCEE
Confidence 6533333332 33345555443322111 12445555555555322 234555554443
No 398
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A
Probab=99.52 E-value=2.1e-14 Score=157.69 Aligned_cols=196 Identities=13% Similarity=0.112 Sum_probs=132.8
Q ss_pred CceeeecCCcEEEEEEEEecC-CCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCC
Q psy17146 636 RTQFGIPGDTARVECSAFSIP-PPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPY 714 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p-~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~ 714 (1011)
..+.+..|++|+|.|.+.+.+ .+ .|.|++++..+.. ...++.. ..+.|.|.++...|+|.|+|. ..
T Consensus 14 ~~v~~~~G~~v~l~C~~~~~~~~~-~i~W~~~~~~~~~-~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~---~~ 80 (325)
T 1n26_A 14 GVLTSLPGDSVTLTCPGVEPEDNA-TVHWVLRKPAAGS-HPSRWAG--------MGRRLLLRSVQLHDSGNYSCY---RA 80 (325)
T ss_dssp TEEEECTTCCEEEECTTSCTTCCS-EEEEEEECSSSSC-CCEEEEE--------ESSEEEECSCCGGGCEEEEEE---SS
T ss_pred CcEECCCCCcEEEEeCCCCCCCCc-eEEEEECCccCCc-ccccccc--------ccceEEecccchhhCeEeEEE---eC
Confidence 444457999999999998876 56 9999998876532 1122221 136899999999999999999 37
Q ss_pred CCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCCCCCccc-ccccccccccc-cCCCCCCCCcC
Q psy17146 715 GSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGIEH-HVTADGEKNQC-KESDNSSNISD 792 (1011)
Q Consensus 715 G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~-~~~~~s~~~~W-~~~d~~s~I~~ 792 (1011)
|...+.+.|.|. ..|.+|. +... .....++.++| ++.|++. .+.
T Consensus 81 g~~~~~~~L~V~--------------------------------~pP~~P~-l~c~~~~~~~~~~c~W~~~~~~~~-~~~ 126 (325)
T 1n26_A 81 GRPAGTVHLLVD--------------------------------VPPEEPQ-LSCFRKSPLSNVVCEWGPRSTPSL-TTK 126 (325)
T ss_dssp SSCSCEEEEEEC--------------------------------CCCCCCC-CEEEBSSTTSCEEEEECCSSCCCT-TCE
T ss_pred CEEeeeEEEEec--------------------------------cCCCCCc-eeEEeecCCCcEEEEECCCCCCCC-Cce
Confidence 888888888874 2222454 4433 22355788899 6667664 478
Q ss_pred cceeeecCc----------------c-----------cccccccc---c---CCCCCCCcccccccccccccccccCCcc
Q psy17146 793 IKLEFRTGS----------------S-----------VSNVHLDY---A---GHDSETGSESVHTRIGVPLAGPVPMDQR 839 (1011)
Q Consensus 793 Y~ve~~~~~----------------~-----------~p~~~Y~f---A---~G~g~~ss~~~~t~~~~P~~~P~~~~~~ 839 (1011)
|.|+++... . .+++.|.| | +|.+......+.+...++..+|.++...
T Consensus 127 y~l~~~~~~~~~~~~~~~~c~~~~~~~~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~l~v~ 206 (325)
T 1n26_A 127 AVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVT 206 (325)
T ss_dssp EEEEEEEESSSSCEEEEEEEEEETTTTEEEEEECCCTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEEEEEE
T ss_pred EEEEEEEccCCCCCcccccCCCCCCCCCEEEEECCCcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcceEEE
Confidence 988875320 0 16789999 5 6665432333445555667788887655
Q ss_pred cccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCCC
Q psy17146 840 YHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQTL 879 (1011)
Q Consensus 840 ~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~~ 879 (1011)
.... +.+...|+|+||.....++.+++|.|+||+.+...
T Consensus 207 ~~~~-~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~~~~~~ 245 (325)
T 1n26_A 207 AVAR-NPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKT 245 (325)
T ss_dssp ECTT-CTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSC
T ss_pred EecC-CCCEEEEEECCCCccCCCcEeEEEEEEEEeCCCCC
Confidence 4111 11244569999876666778899999999986544
No 399
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.50 E-value=5.6e-14 Score=145.97 Aligned_cols=131 Identities=17% Similarity=0.214 Sum_probs=76.3
Q ss_pred ecCCCcEEEEEEccCCC--C-CcEEEEEeCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 145 TTEDREIELECISANGK--P-PAEITWIDGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 145 v~eg~~v~L~C~~~~g~--P-~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
+..|+.+.|.|.+.+.. | ..+++|+|++.++............+ ..+...+.|.|.....+|.|.|+|+|.|..+.
T Consensus 36 l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~-g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~ 114 (240)
T 4acp_A 36 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYN-STYRVVSVLTVLHQDWLNGKEYKCKVSNKALP 114 (240)
T ss_dssp HSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC----CEEEEEEEECCHHHHHHTCCEEEEEECC---
T ss_pred cccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCC-CeEEEEEEEEEechhccCCCEEEEEEEcCCCC
Confidence 55699999999966555 4 44899999998875532211112223 34555678999988889999999999998774
Q ss_pred ceeEEEEEE--EEEeCCceEEEecCcceeecCceEEEEEEcccCCC-ccEEEEEeCCcc
Q psy17146 222 TYKVARLKL--LVKYAPKVQVSVIGSNRLVEGTDVRLYCKAEANPS-HMKYRWYINDQP 277 (1011)
Q Consensus 222 ~~~s~~v~v--~v~~~P~~~~~~~~~~~v~~g~~v~L~C~~~~~~~-~~~i~W~~~~~~ 277 (1011)
......+.+ .+..+|.+.+.......+ +|+.++|.|.+.++++ ...++|++||+.
T Consensus 115 ~~~~~~i~~~~~~~~~P~V~v~~~~~~~~-~g~~~~L~C~~~gf~P~~i~v~W~k~g~~ 172 (240)
T 4acp_A 115 APIEKTISKAKGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNGQP 172 (240)
T ss_dssp -CEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred ccccccccccCCCCCCCEEEEECCChHHh-cCCceEEEEEEeEEeCCCcEEEEEECCEE
Confidence 433444432 233456555443332222 2555666666655432 235555555543
No 400
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.50 E-value=4.6e-13 Score=131.92 Aligned_cols=170 Identities=12% Similarity=0.147 Sum_probs=122.4
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCC-eeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTG-VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~-~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
+.++.+.|+++.|.+|+++.|+|++..+.+ .+.|.-.-. +. .... ..+...+.|.+++ +|++.|
T Consensus 2 ~f~v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~------------~~-~~~~-g~~~~~~~ls~vs-~d~~~~ 66 (196)
T 3bn3_B 2 PFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLR------------RN-GTQR-GLRWLARQLVDIR-EPETQP 66 (196)
T ss_dssp CSCEEEESSEEEEETTEEEEEEEEECCSSCSEEEEECSSE------------EE-EEEE-ETTEEEEEEEEEC-SSEECC
T ss_pred CcEEEEcCCCcEEcCCCeEEEEEeCCCCCCCccEEEEccC------------Ce-eEcc-ccCceEEEEEEEc-cCCCce
Confidence 456788899999999999999999987766 677753211 00 0111 1122248999999 888889
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcE--EEEEeCCceeeeceeEEE
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAE--ITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~--i~W~k~~~~l~~~~~~~~ 183 (1011)
.|.+.... ...+..+.|+|+..|..+.|...+. .+.+|+.++|+|.+.++.|... |+|+|++.++.... +.
T Consensus 67 ~C~~~c~~----~~~~~~v~l~Vy~~P~~v~i~~~~~-~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~-~~- 139 (196)
T 3bn3_B 67 VCFFRCAR----RTLQARGLIRTFQRPDRVELMPLPP-WQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRS-FA- 139 (196)
T ss_dssp EEEEEETT----EEEEEECEEEEEBCCCCCEECCCCS-SEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEE-CT-
T ss_pred EEEEECCC----CceEEEEEEEEecCCCcCEEccCCc-cccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccc-cc-
Confidence 99987642 3467889999999999888876532 3678999999999888888755 89999998885432 11
Q ss_pred eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
...........++.+...+.+|...|+|+|.+..+
T Consensus 140 --~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~ 174 (196)
T 3bn3_B 140 --GEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174 (196)
T ss_dssp --TSCTTCCCEEEEEEEECCGGGTTCEEEEEEEEECG
T ss_pred --cccccccceeEEEEEeeeeccCCCeEEEEEEccCC
Confidence 11111222346788887777777799999998766
No 401
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.50 E-value=7.2e-14 Score=145.39 Aligned_cols=172 Identities=18% Similarity=0.286 Sum_probs=111.4
Q ss_pred ceEEEcCCCcEEEEEEEecCC--CCeE--EEEecCCc---eee-----------------------------cCCCcEEE
Q psy17146 552 YSVQVDRGAGVNLLCDVDGNP--APEI--TWIHEDSD---KVV-----------------------------GNSPNLTL 595 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~p--~p~v--~W~k~~~~---~~~-----------------------------~~~~~L~I 595 (1011)
..+.+.+|++++|.|.+.+.+ ...+ .|+|.... ... ....+|+|
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 87 (232)
T 3qhz_H 8 GPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTM 87 (232)
T ss_dssp CCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEE
T ss_pred CCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEE
Confidence 346689999999999998643 2445 99985311 000 01135999
Q ss_pred eecCCCCCEEEEEEEEecCC-------CceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEecCC-CCeEE
Q psy17146 596 LMTSDDLAGRYYCKASVMGF-------PEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFSIPP-PEKVT 662 (1011)
Q Consensus 596 ~~v~~~d~G~Y~C~a~n~~~-------~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~ 662 (1011)
.+++.+|+|.|.|.+.+... ........|.|. .+|.|. ......+..|+.++|.|.+.+.++ ++.+.
T Consensus 88 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~ 167 (232)
T 3qhz_H 88 TNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS 167 (232)
T ss_dssp CSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEE
T ss_pred CcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEE
Confidence 99999999999999997310 223344567775 456666 344445677999999999998654 55788
Q ss_pred EEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 663 WSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 663 W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|+++|..+........ ...+ ......+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus 168 W~~~g~~~~~~~~~~~-~~~~-g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~ 228 (232)
T 3qhz_H 168 WNSGALTSGVHTFPAV-LQSS-GLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 228 (232)
T ss_dssp EGGGTBCTTEEECCCE-ECTT-SCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred EEECCEecceeeccce-eCCC-CCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence 9999874422111100 1100 001124689999998889 99999999999988888777653
No 402
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.48 E-value=1.4e-13 Score=123.05 Aligned_cols=98 Identities=23% Similarity=0.357 Sum_probs=79.8
Q ss_pred ceeeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 23 AQYREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 23 ~~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
....+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. .+|+.+..+ .+.++|.|.+++.+|
T Consensus 9 ~~~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~------~~~~~~~~~--~~~~~L~I~~v~~~D 80 (107)
T 3knb_B 9 DQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAA------SERLSFPAD--GAEHGLLLTAALPTD 80 (107)
T ss_dssp -CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC------CSSEECCEE--TTEEEEEESSCCGGG
T ss_pred CCCCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccc------eeeEEEeec--CceEEEEEecCChhh
Confidence 3446899999999999999999999999997 7889999999987743 356666544 356789999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEEcCC
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPP 132 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p 132 (1011)
+|.|+|.|.|.. +..+..+.|+|.++|
T Consensus 81 ~G~Y~C~a~N~~----G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 81 AGVYVCRARNAA----GEAYAAAAVTVLEPP 107 (107)
T ss_dssp CEEEEEEEEETT----EEEEEEEEEEEEC--
T ss_pred CEEEEEEEEECC----CEEEEEEEEEEEcCC
Confidence 999999999963 456777889998754
No 403
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.48 E-value=1.1e-13 Score=145.10 Aligned_cols=174 Identities=18% Similarity=0.321 Sum_probs=113.4
Q ss_pred CCceEEEcCCCcEEEEEEEecC--CCCeEEEEecCCce---ee---------------------------cCCCcEEEee
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDSDK---VV---------------------------GNSPNLTLLM 597 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~~~---~~---------------------------~~~~~L~I~~ 597 (1011)
.|..+.+.+|++++|.|.+.+. +...+.|+|..... .+ ....+|+|.+
T Consensus 5 ~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 84 (248)
T 3u2s_H 5 ESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNS 84 (248)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred cCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence 4567789999999999999863 45689999853210 00 1123599999
Q ss_pred cCCCCCEEEEEEEEecC---------------------CCceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEE
Q psy17146 598 TSDDLAGRYYCKASVMG---------------------FPEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECS 651 (1011)
Q Consensus 598 v~~~d~G~Y~C~a~n~~---------------------~~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~ 651 (1011)
++.+|+|.|.|.+.+.. .........|.|. .+|.+. ......+..|+.++|.|.
T Consensus 85 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~ 164 (248)
T 3u2s_H 85 LRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCL 164 (248)
T ss_dssp CCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEEE
T ss_pred CCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEE
Confidence 99999999999998731 1123334567775 356665 334444567999999999
Q ss_pred EEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 652 AFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 652 ~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+.+. |.+..+.|+++|..+....... ....+ ......+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus 165 ~~~~~P~~~~v~W~~~g~~~~~~~~~~-~~~~~-g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~ 237 (248)
T 3u2s_H 165 VKDYFPEPVTVSWNSGALTSGVHTFPA-VLQSS-GLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK 237 (248)
T ss_dssp EEEEBSSCCEEEEGGGTBCTTEEECCC-EECTT-SCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC-
T ss_pred EeeEECCCeEEEEeECCccCceeecCc-eECCC-CCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEccC
Confidence 9985 5455899999987432211110 00000 001124689999988888 99999999999888777766654
No 404
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.47 E-value=2.6e-13 Score=140.90 Aligned_cols=172 Identities=17% Similarity=0.285 Sum_probs=114.9
Q ss_pred CceEEEcCCCcEEEEEEEecC--CCCeEEEEecCCc--e-----------------------ee-----cCCCcEEEeec
Q psy17146 551 PYSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDSD--K-----------------------VV-----GNSPNLTLLMT 598 (1011)
Q Consensus 551 p~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~~--~-----------------------~~-----~~~~~L~I~~v 598 (1011)
|..+.+.+|++++|.|.+.+. ....+.|+|.... . .. ....+|+|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (230)
T 3n9g_H 7 SGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL 86 (230)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence 335779999999999999863 3468999975311 0 00 01124999999
Q ss_pred CCCCCEEEEEEEEecCC----C---ceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEecCC-CCeEEEEE
Q psy17146 599 SDDLAGRYYCKASVMGF----P---EVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFSIPP-PEKVTWSY 665 (1011)
Q Consensus 599 ~~~d~G~Y~C~a~n~~~----~---~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~ 665 (1011)
+.+|+|.|.|.+.+... + .....+.|.|. .+|.+. ......+..|+.++|.|.+.+.++ +..+.|
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W-- 164 (230)
T 3n9g_H 87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-- 164 (230)
T ss_dssp CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--
T ss_pred ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--
Confidence 99999999999997320 1 12244567774 356665 344444678999999999998643 447999
Q ss_pred CCeEecccC-CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 666 RGEEIGVGS-SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 666 ~g~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|..+.... ..... ..........+.|.|.....+| |.|+|.|.|..+.......|.|.
T Consensus 165 ~~~~~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~ 224 (230)
T 3n9g_H 165 NSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 224 (230)
T ss_dssp GGGTBCTTEEECCCE-ECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred CCcccCCCeEeCCce-ECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence 665543210 00000 1100001124689999999999 99999999999888888877764
No 405
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.47 E-value=8.5e-15 Score=150.25 Aligned_cols=169 Identities=18% Similarity=0.190 Sum_probs=110.9
Q ss_pred cee-ecCCceEEEcCCCcEEEEEEEecCCC---CeEEEEecCCcee------e-c------CCCcEEEeecCCCCCEEEE
Q psy17146 545 PRF-RARPYSVQVDRGAGVNLLCDVDGNPA---PEITWIHEDSDKV------V-G------NSPNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 545 P~~-~~~p~~~~v~~G~~~~l~C~~~g~p~---p~v~W~k~~~~~~------~-~------~~~~L~I~~v~~~d~G~Y~ 607 (1011)
|.+ ...|....+.+|++++|.|.+.+.+. +.|.| ++..... . . ....|+|.++..+|+|.|+
T Consensus 4 p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~ 82 (214)
T 1ow0_A 4 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFT 82 (214)
T ss_dssp CCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEE
T ss_pred CEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEE
Confidence 444 45577778899999999999999865 68999 4432110 0 1 1236888888899999999
Q ss_pred EEEEecCCCceeeEEEE---EEcCCCeee--cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccC--CCCeE
Q psy17146 608 CKASVMGFPEVGAEATV---YLKGRPTII--SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGS--SDDYS 679 (1011)
Q Consensus 608 C~a~n~~~~~~s~~~~l---~V~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~--~~~~~ 679 (1011)
|.|.|. .+.......| .+..+|.+. .+....+..|+.++|.|.+.|. |.+..|+|+|||..+.... ...+.
T Consensus 83 C~~~~~-~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~ 161 (214)
T 1ow0_A 83 CTAAYP-ESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASR 161 (214)
T ss_dssp EEECCS-SCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCE
T ss_pred EEEecC-CCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCc
Confidence 999984 2222222333 345678765 2333346789999999999996 5445999999999886431 01111
Q ss_pred EecCCcCcc---ceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 680 VLEDPLKEG---IKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 680 ~~~~~~~~~---~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
.. ....++ ..+.|.|......|.|.|+|.|.|....
T Consensus 162 ~~-~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~ 200 (214)
T 1ow0_A 162 QE-PSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 200 (214)
T ss_dssp EC-SCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred cc-ccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence 11 000122 2345666665555689999999998754
No 406
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.45 E-value=6.3e-13 Score=120.84 Aligned_cols=92 Identities=25% Similarity=0.311 Sum_probs=78.8
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+. ...++.+.. ....+.|.|.++..+|+|.|
T Consensus 6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~~~--~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y 78 (114)
T 2cqv_A 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPI-TCTWMKFRKQIQ--ESEHMKVEN----SENGSKLTILAARQEHCGCY 78 (114)
T ss_dssp CCCEESCCCCSEEEETTCCEEEEEEEESSSSC-EEEEEESSSBCC--CSSSEEEEE----CSSEEEEEETTCCTTTCEEE
T ss_pred CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCC-EEEEEECCEECc--CCCCEEEEE----cCCEEEEEECCCChhcCEEE
Confidence 467777 4567789999999999999999999 999999999987 345666654 23357999999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEec
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|.|.|..|..+..+.|.|.
T Consensus 79 ~C~a~N~~g~~~~~~~l~V~ 98 (114)
T 2cqv_A 79 TLLVENKLGSRQAQVNLTVV 98 (114)
T ss_dssp EEEEECSSCEEECCEEEEEE
T ss_pred EEEEEECCCcEEEEEEEEEE
Confidence 99999999999999999884
No 407
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.45 E-value=9.9e-15 Score=134.69 Aligned_cols=111 Identities=34% Similarity=0.639 Sum_probs=92.3
Q ss_pred ceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEc
Q psy17146 617 EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIR 696 (1011)
Q Consensus 617 ~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~ 696 (1011)
+.++.+.|.|..+|.|..+....+.+|+.+.|.|.+.|.|.|..|.|++++..+......++.+......++..+.|.|.
T Consensus 2 s~~~~~~l~V~~~P~i~~~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~ 81 (122)
T 2cry_A 2 SSGSSGTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTIS 81 (122)
T ss_dssp CSSCCCCCCCCSSCCEEEECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECT
T ss_pred ccceEEEEEEecCCCccCCCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEc
Confidence 45667788999999998766778999999999999999999944999999999875445677765332223446799999
Q ss_pred CCCCCCC-EEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 697 ESRHDHF-GVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 697 ~~~~~d~-G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
++..+|+ |.|+|.|.|.+|.+++.+.|.|.+
T Consensus 82 ~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~ 113 (122)
T 2cry_A 82 NIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113 (122)
T ss_dssp TCCHHHHHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred CCChhhCCceEEEEEECCCCeEEEEEEEEECC
Confidence 9999999 999999999999999999998864
No 408
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.43 E-value=4.9e-13 Score=149.82 Aligned_cols=167 Identities=13% Similarity=0.184 Sum_probs=113.6
Q ss_pred cCCceEE-EcCCCcEEEEEEEecC-CCC---eEEEEecCCceee---------c-----CCCcEEEeecCCCCCEEEEEE
Q psy17146 549 ARPYSVQ-VDRGAGVNLLCDVDGN-PAP---EITWIHEDSDKVV---------G-----NSPNLTLLMTSDDLAGRYYCK 609 (1011)
Q Consensus 549 ~~p~~~~-v~~G~~~~l~C~~~g~-p~p---~v~W~k~~~~~~~---------~-----~~~~L~I~~v~~~d~G~Y~C~ 609 (1011)
..|.... +.+|++++|.|.+.|. |.| .|.|+|++..... . ....|.|..+..+|+|.|+|.
T Consensus 172 ~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~ 251 (376)
T 2aty_A 172 FPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCR 251 (376)
T ss_pred eCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEE
Confidence 3444344 7889999999999988 333 6999999854311 0 123799999999999999999
Q ss_pred EEecCC-CceeeEEEE--EEcCCCeeec-CCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCC
Q psy17146 610 ASVMGF-PEVGAEATV--YLKGRPTIIS-HRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDP 684 (1011)
Q Consensus 610 a~n~~~-~~~s~~~~l--~V~~~P~i~~-~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~ 684 (1011)
|.|... ......+.+ .+..+|.+.. +.......|+.++|.|.+.|. |+.+.|+|+|||+++............+
T Consensus 252 ~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~d- 330 (376)
T 2aty_A 252 VNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTN- 330 (376)
T ss_pred EecCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCC-
Confidence 998422 222333333 5567888763 334445569999999999996 4445899999999875321111111111
Q ss_pred cCccceeEEEEcCCCCCCCEEEEEEEEcCCCC
Q psy17146 685 LKEGIKSTLIIRESRHDHFGVYNCSVSNPYGS 716 (1011)
Q Consensus 685 ~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~ 716 (1011)
......+.|.|.....+|.|.|+|.|.|..-.
T Consensus 331 gty~~~s~L~i~~~~~~~~~~YtC~v~h~~l~ 362 (376)
T 2aty_A 331 ESYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 362 (376)
T ss_pred CCEEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence 00113467888888888899999999998754
No 409
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.43 E-value=6.1e-14 Score=143.84 Aligned_cols=180 Identities=14% Similarity=0.169 Sum_probs=114.4
Q ss_pred eeecCCceeEEecCcEEEEEEEcCC-C---CeeEEeeCCeecCCc-ccC---CCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 30 FAMEPQDQTAVVGSRVTLPCRVIDK-T---GVLQWTKDDFALGPH-RNL---SGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 30 ~~~~p~~~~v~~G~~v~L~C~v~~~-~---~~v~W~k~~~~l~~~-~~~---~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
+...|..+.+.+|++++|.|.+.+. . ..|.| ++ ..+... ... ...+++ ....+|+|.+++.+|
T Consensus 7 ~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~-~~~~~~~~~~~~~~~~g~~-------~~~~~L~I~~~~~~D 77 (214)
T 1ow0_A 7 SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGCY-------SVSSVLPGCAEPWNH 77 (214)
T ss_dssp EEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SS-CSSCCCEECCCCCCSTTCC-------CEEEECTTTHHHHHH
T ss_pred EEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-cC-CCCCCcccCCceECCCCcE-------EEEEEEEEeHHHcCC
Confidence 4456888899999999999999873 2 58999 44 333211 000 011111 134579999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeee--cCCeeeecCCCcEEEEEEccCCCCC-cEEEEEeCCceeeec
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV--QGDTLYTTEDREIELECISANGKPP-AEITWIDGTGTVMSN 178 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~--~~~~~~v~eg~~v~L~C~~~~g~P~-~~i~W~k~~~~l~~~ 178 (1011)
+|.|+|.+.+..... .....+.+.....+|.+. .+....+.+|+.+.|.|.+.+.+|+ ++|+|+||+..+..+
T Consensus 78 ~g~Y~C~~~~~~~~~----~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~ 153 (214)
T 1ow0_A 78 GKTFTCTAAYPESKT----PLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE 153 (214)
T ss_dssp TCEEEEEECCSSCSS----CEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGG
T ss_pred CCeEEEEEecCCCCC----ceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCC
Confidence 999999998864221 111223221223344442 2223345689999999995544675 599999999877554
Q ss_pred eeEEE-eeec---CCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCCc
Q psy17146 179 VRVTE-EASV---DGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADRT 222 (1011)
Q Consensus 179 ~~~~~-~~~~---~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~~ 222 (1011)
..... .... ....+...+.|.|.....+|.|.|+|.|.|.....
T Consensus 154 ~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~~ 201 (214)
T 1ow0_A 154 KYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALPL 201 (214)
T ss_dssp GSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCTT
T ss_pred ceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCCC
Confidence 21111 1111 23355666788888877778999999999986643
No 410
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.43 E-value=1.1e-12 Score=135.37 Aligned_cols=177 Identities=15% Similarity=0.194 Sum_probs=113.3
Q ss_pred ceeecCCceeEEecCcEEEEEEEcCC---CCeeEEeeCCe--ecC----C--cccCCCCcceEEeecCCCceeEEEEeec
Q psy17146 29 KFAMEPQDQTAVVGSRVTLPCRVIDK---TGVLQWTKDDF--ALG----P--HRNLSGFDRYAMIGSDEEGDYSLEIYPV 97 (1011)
Q Consensus 29 ~~~~~p~~~~v~~G~~v~L~C~v~~~---~~~v~W~k~~~--~l~----~--~~~~~~~~r~~i~~~~~~~~~~L~I~~v 97 (1011)
.+...|..+.+.+|++|+|.|.+.+. ...+.|+|... .+. . .......+|+.+..+...+.++|+|.++
T Consensus 3 ~v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 82 (229)
T 1hxm_A 3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP 82 (229)
T ss_dssp CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred ccEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcC
Confidence 35667889999999999999999853 35799998642 110 0 0011124788887655567789999999
Q ss_pred ccCCCceEEEEEEeCCC----CCcceeeeEEEEEEEcC---CCCCeeecCCeeeecCCCcEEEEEEccCCCCCc-EEEEE
Q psy17146 98 MLDDDARYQCQVSTGIL----GEPAIRSRFATLTVLVP---PDPPRIVQGDTLYTTEDREIELECISANGKPPA-EITWI 169 (1011)
Q Consensus 98 ~~~D~G~Y~C~~~~~~~----~~~~~~s~~~~l~V~~~---p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~-~i~W~ 169 (1011)
+.+|+|.|.|.+.+... .........+.|+|... +.+|.+ .+..+ .+.|.|.+.+.+|.+ .++|+
T Consensus 83 ~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v------~~~~~-~~~L~C~~~g~~P~~i~v~W~ 155 (229)
T 1hxm_A 83 SERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSV------FVMKN-GTNVACLVKEFYPKDIRINLV 155 (229)
T ss_dssp CGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEE------EEEEE-TTEEEEEEESCBSSCCEEEEE
T ss_pred CHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcE------EEcCC-CCeEEEEEEEEeCCCEEEEEe
Confidence 99999999999987521 01112233467888752 223333 22222 248999966667765 99999
Q ss_pred eCCceeeeceeEEEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCC
Q psy17146 170 DGTGTVMSNVRVTEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTAD 220 (1011)
Q Consensus 170 k~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g 220 (1011)
++ +.+..+.... ....++.. ... .....+|.|.|+|.+.|..+
T Consensus 156 ~~-~~~~~~~~~~-~~~~dg~y-~~~-----~~~~~~~~~~ytC~V~h~~~ 198 (229)
T 1hxm_A 156 SS-KKITEFDPAI-VISPSGKY-NAV-----KLGKYEDSNSVTCSVQHDNK 198 (229)
T ss_dssp CS-SEEEECCCEE-EECTTSSE-EEE-----EEEEETTTTTCEEEEEETTE
T ss_pred cC-CEEecCccce-EECCCCcE-EEE-----ECcccCCCCcEEEEEEeCCC
Confidence 99 7765432221 22334422 111 12233789999999999754
No 411
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.43 E-value=4.8e-13 Score=119.10 Aligned_cols=95 Identities=24% Similarity=0.238 Sum_probs=80.0
Q ss_pred EcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 626 LKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 626 V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
+..+|.|. .+....+.+|+.+.|.|.+.|.|.| .+.|+|+|..+.. ..++.+.. .+....|.|.++..+|+|
T Consensus 5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~~~~--~~~~~~~~----~~~~~~L~i~~~~~~D~G 77 (103)
T 3qp3_A 5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTA-EVKWYHNGVELQE--SSKIHYTN----TSGVLTLEILDCHTDDSG 77 (103)
T ss_dssp TCEEEEEEECCCCEEEETTCCEEEEEEEEEESCC-EEEEEETTEECCC--CSSEEEEE----ETTEEEEEECSCCGGGCE
T ss_pred CCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCC-EEEEEECCEECCC--CCCEEEEE----CCCEEEEEEcCCCcccCE
Confidence 34567776 4567789999999999999999999 9999999999874 45666654 334578999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEecC
Q psy17146 705 VYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|+|.|.|..|..+..+.|.|.+
T Consensus 78 ~Y~C~a~N~~G~~~~~~~l~V~~ 100 (103)
T 3qp3_A 78 TYRAVCTNYKGEASDYATLDVTG 100 (103)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEEeCCCcEEEEEEEEEEC
Confidence 99999999999999999998864
No 412
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.43 E-value=8e-13 Score=114.62 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=75.2
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
.++|.|...+.++.+.+|++|+|.|.+.++.+.+.|+|+|..+.. .+|+.+..++ +.++|.|.+++.+|+|.
T Consensus 3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~v~W~k~g~~i~~------~~~~~i~~~g--~~~~L~I~~v~~~D~G~ 74 (93)
T 1waa_A 3 MALIEVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAA------SPDCEIIEDG--KKHILILHNCQLGMTGE 74 (93)
T ss_dssp CCCCCEEECCCCEEEETTSCEEEEEEESSSSCCCEEEETTEECCC------BTTEEEEEET--TEEEEEECSCCGGGCEE
T ss_pred CCCcEeeccCcceEEeCCCCEEEEEEECCCCCeEEEEECCEECcC------CCCEEEEEEC--CEEEEEECCCChhhCEE
Confidence 467899999999999999999999999987789999999987743 3577766543 45689999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEEEc
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTVLV 130 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V~~ 130 (1011)
|+|.+.|. ...+.|+|..
T Consensus 75 Y~C~a~n~--------~~sa~L~V~~ 92 (93)
T 1waa_A 75 VSFQAANT--------KSAANLKVKE 92 (93)
T ss_dssp EEEEETTE--------EEEEEEEEEC
T ss_pred EEEEECCC--------cEEEEEEEEc
Confidence 99999763 3567888875
No 413
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.42 E-value=8e-13 Score=148.05 Aligned_cols=185 Identities=16% Similarity=0.240 Sum_probs=115.6
Q ss_pred eeecCCcee-EEecCcEEEEEEEcCCC--C---eeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 30 FAMEPQDQT-AVVGSRVTLPCRVIDKT--G---VLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 30 ~~~~p~~~~-v~~G~~v~L~C~v~~~~--~---~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
|...|.... +.+|++++|.|.+.+.. + .|.|+|++..+...... ....+.........+|.|.+++.+|+|
T Consensus 170 ~~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~---~~~~~~~~~~~~~s~L~I~~~~~~D~g 246 (376)
T 2aty_A 170 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQ---PREEQFNSTFRSVSELPIMHQDWLNGK 246 (376)
T ss_pred EEeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccC---CCCcccCCcEEEEEEEEechHhccCCC
Confidence 345555555 89999999999998642 2 69999998654211100 000000011112347999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeee-cCCeeeecCCCcEEEEEEccCCCC-CcEEEEEeCCceeeeceeE
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIV-QGDTLYTTEDREIELECISANGKP-PAEITWIDGTGTVMSNVRV 181 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~-~~~~~~v~eg~~v~L~C~~~~g~P-~~~i~W~k~~~~l~~~~~~ 181 (1011)
.|+|++.+...... ....+.+. .....+|.+. ..+.....+|+.+.|.|.+.+.+| .++|+|+||+..+......
T Consensus 247 ~Y~C~~~~~~~~~~--~~~~v~~~-~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~ 323 (376)
T 2aty_A 247 EFKCRVNSAAFPAP--IEKTISKT-KGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNT 323 (376)
T ss_pred EEEEEEecCCCCCc--eEEEEcCC-CCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeC
Confidence 99999988643221 11112111 1122233332 223333446899999999544455 5799999999877443222
Q ss_pred EEeeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCCCC
Q psy17146 182 TEEASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTADR 221 (1011)
Q Consensus 182 ~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~g~ 221 (1011)
......++ .+...+.|.|.....+|.|.|+|.|.|....
T Consensus 324 ~~~~~~dg-ty~~~s~L~i~~~~~~~~~~YtC~v~h~~l~ 362 (376)
T 2aty_A 324 QPIMNTNE-SYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 362 (376)
T ss_pred CceECCCC-CEEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence 21223333 5566788999998889999999999997653
No 414
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.42 E-value=1.1e-12 Score=115.82 Aligned_cols=94 Identities=22% Similarity=0.228 Sum_probs=77.4
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+.. ..++.+... ......|.|.++..+|+|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~~~~--~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y 77 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVKIER--SDRIYWYWP---EDNVCELVIRDVTGEDSASI 77 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECCC--CSSEEEEEE---ETTEEEEEECSCCGGGCEEE
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCC-EEEEEECCEECCC--CCCEEEEEc---CCCEEEEEECCCCcCCCEEE
Confidence 356665 4567789999999999999999999 9999999999874 344444321 23357899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+|.|.|..|.....+.|.|.+
T Consensus 78 ~C~a~N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 78 MVKAINIAGETSSHAFLLVQA 98 (99)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECCCcEEEEEEEEEec
Confidence 999999999999999998853
No 415
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=115.11 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=77.3
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+... ..++.+.. .+...+|.|.++..+|+|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~~~~~~~~-~~~~~~~~----~~~~~~L~i~~~~~~D~G~Y 77 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKP-VVSWLRNRQPVRPD-QRRFAEEA----EGGLCRLRILAAERGDAGFY 77 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCC-EEEEEETTEECCCB-TTEEEEEC----GGGEEEEEESSCCGGGCEEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCC-EEEEEECCEECCCC-CCEEEEEC----CCCEEEEEEccCCcCCCEEE
Confidence 456666 4566789999999999999999999 99999999998742 23444433 33456899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+|.|.|..|..+..+.|.|.+
T Consensus 78 ~C~a~N~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 78 TCKAVNEYGARQCEARLEVRG 98 (99)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECCCceeEEEEEEEEC
Confidence 999999999999999998853
No 416
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.41 E-value=5.1e-13 Score=117.78 Aligned_cols=85 Identities=20% Similarity=0.414 Sum_probs=74.1
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee-----------cCCCcEEEeecCCCCCEEEEEEEE
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV-----------GNSPNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~-----------~~~~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
.||.|...|.++.+.+|+.+.|.|.+.|.|.|.++|+|++..+.. ....+|.|.++..+|+|.|+|.|.
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 83 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG 83 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence 478999999999999999999999999999999999999855421 123579999999999999999999
Q ss_pred ecCCCceeeEEEEEEcC
Q psy17146 612 VMGFPEVGAEATVYLKG 628 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~~ 628 (1011)
| ..|..+..+.|.|+.
T Consensus 84 N-~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 84 N-EFGSDSATVNIHIRS 99 (100)
T ss_dssp E-TTEEEEEEEEEEEEC
T ss_pred E-CCCEEEEEEEEEEEE
Confidence 9 678888899998863
No 417
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.40 E-value=1.2e-12 Score=138.35 Aligned_cols=172 Identities=20% Similarity=0.342 Sum_probs=109.9
Q ss_pred ceEEEcCCCcEEEEEEEecCC--CCeEEEEecCCc---e-e---------------------e-----cCCCcEEEeecC
Q psy17146 552 YSVQVDRGAGVNLLCDVDGNP--APEITWIHEDSD---K-V---------------------V-----GNSPNLTLLMTS 599 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~~---~-~---------------------~-----~~~~~L~I~~v~ 599 (1011)
..+.+.+|++++|.|.+.+.. ...+.|+|.... . . . ....+|+|.+++
T Consensus 31 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 110 (256)
T 3sob_H 31 GGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLR 110 (256)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCC
Confidence 345789999999999998643 468999985311 0 0 0 011349999999
Q ss_pred CCCCEEEEEEEEecC----------CCceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEE
Q psy17146 600 DDLAGRYYCKASVMG----------FPEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTW 663 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~----------~~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W 663 (1011)
.+|+|.|.|.+.+.+ .........|.|. .+|.|. ..+...+.+|+.++|.|.+.+. |.+..+.|
T Consensus 111 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W 190 (256)
T 3sob_H 111 AEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW 190 (256)
T ss_dssp GGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE
T ss_pred cccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE
Confidence 999999999998732 1123334466664 356665 3344456789999999999985 54558999
Q ss_pred EECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 664 SYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 664 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|..+....................+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus 191 --~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~ 250 (256)
T 3sob_H 191 --NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK 250 (256)
T ss_dssp --GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred --CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEeccc
Confidence 6554432100000001100001124689999999999 99999999999888777777654
No 418
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.40 E-value=9e-13 Score=136.32 Aligned_cols=169 Identities=16% Similarity=0.280 Sum_probs=109.5
Q ss_pred ceEEEcCCCcEEEEEEEecC--CCCeEEEEecCCc----ee---------------------e-----cCCCcEEEeecC
Q psy17146 552 YSVQVDRGAGVNLLCDVDGN--PAPEITWIHEDSD----KV---------------------V-----GNSPNLTLLMTS 599 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g~--p~p~v~W~k~~~~----~~---------------------~-----~~~~~L~I~~v~ 599 (1011)
..+.+.+|++++|.|.+.+. +...+.|+|.... .. . ....+|+|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (226)
T 3mlr_H 8 GGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQ 87 (226)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCC
T ss_pred CCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCC
Confidence 35789999999999999764 3568999985311 00 0 012349999999
Q ss_pred CCCCEEEEEEEEecCC--------CceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEec-CCCCeEEEEE
Q psy17146 600 DDLAGRYYCKASVMGF--------PEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSY 665 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~--------~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~ 665 (1011)
.+|+|.|.|.+.+... ........|.|. .+|.|. .+....+..|+.++|.|.+.+. |.+..+.|
T Consensus 88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W-- 165 (226)
T 3mlr_H 88 ASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-- 165 (226)
T ss_dssp GGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--
T ss_pred cccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--
Confidence 9999999999987310 111233456663 456665 2334445689999999999986 43558999
Q ss_pred CCeEecccC-CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEE
Q psy17146 666 RGEEIGVGS-SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLK 724 (1011)
Q Consensus 666 ~g~~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 724 (1011)
++..+.... ..... ..........+.|.|.....+| |.|+|.|.|..+.......|.
T Consensus 166 ~~~~~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~ 223 (226)
T 3mlr_H 166 NSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE 223 (226)
T ss_dssp GGGTCCTTEEECCCE-ECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECC
T ss_pred CCccccCCeEeCCcE-ECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEEcc
Confidence 544332100 00000 0100001124689999999889 999999999998776665553
No 419
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.39 E-value=1.1e-12 Score=114.11 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=73.3
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECC--eEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRG--EEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g--~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
+|.|. .+....+.+|+.+.|.|.+.|.|.| .++|+|+| ..+.. ...+. . ....+.|.|.++..+|+|.
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~~~~~~~~~--~~~~~--~----~~~~~~L~i~~~~~~D~G~ 72 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAALAP--ELLVD--A----KSSTTSIFFPSAKRADSGN 72 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSC-EEEEECSTTTCBCST--TSEEE--E----ETTEEEEECTTBCGGGCEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCC-EEEEEECCCCcccCC--cEEEE--e----cCCEEEEEECCCChhcCEE
Confidence 57776 3456779999999999999999999 99999999 87753 22222 1 1235789999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEec
Q psy17146 706 YNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
|+|.|.|..|.++..+.|.|+
T Consensus 73 Y~C~a~N~~G~~~~~~~l~V~ 93 (93)
T 1wit_A 73 YKLKVKNELGEDEAIFEVIVQ 93 (93)
T ss_dssp EEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEcCCCeEEEEEEEEEC
Confidence 999999999999999998873
No 420
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.39 E-value=1.5e-12 Score=115.15 Aligned_cols=94 Identities=22% Similarity=0.358 Sum_probs=76.9
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+.......+.... .....|.|.++..+|+|.|
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~g~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y 77 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAP-DVSWYLNGRTVQSDDLHKMIVSE-----KGLHSLIFEVVRASDAGAY 77 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECEEESCC-EEEEEETTEEECCCSSSCEEEET-----TTEEEEEESSCCGGGCEEE
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCC-EEEEEECCEECcCCCcEEEEEcC-----CCeEEEEECCCCcccCEEE
Confidence 467766 4567789999999999999999999 99999999998754333333222 2346899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+|.|.|..|..+..+.|.|.+
T Consensus 78 ~C~a~n~~g~~~~~~~l~V~~ 98 (100)
T 2kdg_A 78 ACVAKNRAGEATFTVQLDVLA 98 (100)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEcCCCeEEEEEEEEEEe
Confidence 999999999999999998853
No 421
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.39 E-value=2e-12 Score=114.06 Aligned_cols=92 Identities=24% Similarity=0.382 Sum_probs=78.2
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+. ...++.+.. .+....|.|.++..+|+|.|
T Consensus 5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p-~v~W~~~g~~~~--~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y 77 (99)
T 3puc_A 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRP-TAIWTKDGKAIT--QGGKYKLSE----DKGGFFLEIHKTDTSDSGLY 77 (99)
T ss_dssp EEEEEEECCCCEEEESSSCEEEEEEEEEESCC-EEEEEETTEECC--SSSSEEEEE----ETTEEEEEECSCCGGGCEEE
T ss_pred CCCEEEecCccEEEeCCCcEEEEEEEEecCCC-EEEEEECCEECc--CCCCEEEEE----eCCEEEEEECCCCcccCEEE
Confidence 456666 4467789999999999999999999 999999999987 446666654 23456899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEec
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|.|.|..|..+..+.|.|.
T Consensus 78 ~C~a~n~~g~~~~~~~l~V~ 97 (99)
T 3puc_A 78 TCTVKNSAGSVSSSCKLTIK 97 (99)
T ss_dssp EEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEeCCCcEeEEEEEEEE
Confidence 99999999999999999875
No 422
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.39 E-value=1.7e-12 Score=115.21 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=74.6
Q ss_pred EcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCe--EEecCCcCccceeEEEEcCCCCCCC
Q psy17146 626 LKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDY--SVLEDPLKEGIKSTLIIRESRHDHF 703 (1011)
Q Consensus 626 V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~--~~~~~~~~~~~~~~L~I~~~~~~d~ 703 (1011)
|..||.|..... ...|+.+.|.|.+.|.|.| .++|+|||+.+..+ .++ .+... ......+.|.|.++..+|+
T Consensus 1 V~~pP~i~~~~~--~~~~~~~~~~c~v~G~P~P-~i~W~k~g~~l~~~--~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~ 74 (103)
T 1wwb_X 1 VHFAPTITFLES--PTSDHHWCIPFTVKGNPKP-ALQWFYNGAILNES--KYICTKIHVT-NHTEYHGCLQLDNPTHMNN 74 (103)
T ss_dssp CCCCCCCCCCCC--CCCCCEEEEEEEEECSSCC-EEEEEETTEEECCC--SSEEEEEEEE-CSSEEEEEEEEESCCGGGC
T ss_pred CCCCCEEEeccC--ceECcEEEEEEEEEEeCCC-EEEEEECCEECCCC--CcEeEEEEec-CCcEEEEEEEECCCCcccC
Confidence 456788763322 3468889999999999999 99999999999743 332 22111 1112356799999999999
Q ss_pred EEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 704 GVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 704 G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
|.|+|.|+|.+|.++.++.|.|.+.
T Consensus 75 G~Y~C~A~N~~G~~~~~~~l~V~~~ 99 (103)
T 1wwb_X 75 GDYTLIAKNEYGKDEKQISAHFMGW 99 (103)
T ss_dssp EEEEEEEECSSCEEEEEEEECCSCC
T ss_pred EEEEEEEEeCCCcEeEEEEEEECCC
Confidence 9999999999999999999998643
No 423
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.39 E-value=1.8e-12 Score=114.52 Aligned_cols=93 Identities=27% Similarity=0.409 Sum_probs=79.3
Q ss_pred CCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEE
Q psy17146 629 RPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 629 ~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
||.|. .+....+.+|+.++|.|.+.|.|.| .+.|+++|..+......++.+..+ +..+.|.|.++..+|+|.|+
T Consensus 5 pP~i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~ 79 (100)
T 3irg_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTP-EVTWSCGGRKIHSQEQGRFHIENT----DDLTTLIIMDVQKQDGGLYT 79 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCC-EEEEEETTEECCTTGGGTEEEEEC----SSEEEEEESSCCGGGCEEEE
T ss_pred CCeeecCCCcEEEcCCCcEEEEEEEEEcCCC-ceEEEECCEEeecCCCCEEEEEec----CCEEEEEEeecCcccCEEEE
Confidence 56665 3456779999999999999999999 999999999987545567776652 34579999999999999999
Q ss_pred EEEEcCCCCeEEEEEEEec
Q psy17146 708 CSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 708 C~a~N~~G~~~~~~~l~V~ 726 (1011)
|.|.|..|..+..+.|.|+
T Consensus 80 C~a~n~~g~~~~~~~l~V~ 98 (100)
T 3irg_A 80 LSLGNEFGSDSATVNIHIR 98 (100)
T ss_dssp EEEEETTEEEEEEEEEEEE
T ss_pred EEEEeCCCcEEEEEEEEEE
Confidence 9999999999999999875
No 424
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.38 E-value=2.8e-12 Score=130.46 Aligned_cols=160 Identities=13% Similarity=0.229 Sum_probs=103.0
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCC--c-ee---------------e------cCCCcEEEeecCCCC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDS--D-KV---------------V------GNSPNLTLLMTSDDL 602 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~--~-~~---------------~------~~~~~L~I~~v~~~d 602 (1011)
+...|..+.+.+|++++|.|.+.+.. +.+.|+|... . .. . ....+|+|.+++.+|
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D 82 (207)
T 1ypz_E 4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED 82 (207)
T ss_dssp EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence 45567788999999999999998765 5899998642 1 10 1 112479999999999
Q ss_pred CEEEEEEEEecCC--------Cc--eeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEec
Q psy17146 603 AGRYYCKASVMGF--------PE--VGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIG 671 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~--------~~--~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~ 671 (1011)
+|.|.|.+.+... .. ....+.|.|...+....++...+..+ .++|.|.+.|. |.+..|+|+++ ..+.
T Consensus 83 ~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~ 160 (207)
T 1ypz_E 83 SGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS-KKIV 160 (207)
T ss_dssp CEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-SEEE
T ss_pred CEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-Cccc
Confidence 9999999998321 11 22345777765322222222223222 37999999986 44239999999 7765
Q ss_pred ccCCCCeEEecCCcCccceeEEEEcCCCC-CCCEEEEEEEEcCCCCe
Q psy17146 672 VGSSDDYSVLEDPLKEGIKSTLIIRESRH-DHFGVYNCSVSNPYGSD 717 (1011)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~d~G~Y~C~a~N~~G~~ 717 (1011)
.. ........ + +.+.+..... +|.|.|+|.|.|..+..
T Consensus 161 ~~-~~~~~~~~----~---g~y~~~~~~~~~~~~~ytC~v~~~~~~~ 199 (207)
T 1ypz_E 161 EF-DPAIVISP----S---GKYSAVKLGQYGDSNSVTCSVQHNSETV 199 (207)
T ss_dssp EC-CCEEEECT----T---SSEEEEECEEESSTTTCEEEEEETTEEE
T ss_pred CC-ccceEEcC----C---CcEEEEEeecccCCCcEEEEEEECCccE
Confidence 32 11111111 1 2333333443 67899999999998643
No 425
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.8e-12 Score=114.30 Aligned_cols=95 Identities=20% Similarity=0.260 Sum_probs=79.7
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
...+|.|...+.++++.+|++++|.|.+ .+.+.+.|+|+|..+. ..+|+.+..+ .+..+|.|.+++.+|+|
T Consensus 4 ~~~p~~~~~~~~~~~v~~G~~v~l~C~v-~p~p~v~W~k~g~~l~------~~~r~~i~~~--~~~~~L~I~~v~~~D~G 74 (100)
T 2yuz_A 4 GSSGLKILTPLTDQTVNLGKEICLKCEI-SENIPGKWTKNGLPVQ------ESDRLKVVQK--GRIHKLVIANALTEDEG 74 (100)
T ss_dssp SSCCCCCSBCCCCEEEETTSCCCEEEEC-SSCCCEEEEETTEECC------CCSSEEEEEC--SSEEEEEESSCCGGGCS
T ss_pred CCCCCEEeccCCceEEcCCCCEEEEEEe-CCCCeEEEEECCEECC------CCCcEEEEEe--CCEEEEEECCCChhhCE
Confidence 4557899999999999999999999999 8888999999998774 2357777654 35678999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCC
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPD 133 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~ 133 (1011)
.|+|.+.|. ..+..+.|+|.++|.
T Consensus 75 ~Y~C~a~N~------~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 75 DYVFAPDAY------NVTLPAKVHVISGPS 98 (100)
T ss_dssp EEEEEESSS------CCCEEEEEEEECCSC
T ss_pred EEEEEEcCC------CeeEEEEEEEeCCCC
Confidence 999999885 246778999998764
No 426
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.37 E-value=1.2e-12 Score=138.48 Aligned_cols=169 Identities=18% Similarity=0.296 Sum_probs=107.7
Q ss_pred eEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--c-e---------------------ee-----cCCCcEEEeecCCC
Q psy17146 553 SVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--D-K---------------------VV-----GNSPNLTLLMTSDD 601 (1011)
Q Consensus 553 ~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~-~---------------------~~-----~~~~~L~I~~v~~~ 601 (1011)
.+.+.+|++++|.|.+.+.. ...+.|+|... . . .. ....+|+|.+++.+
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 88 (263)
T 3iu4_H 9 PGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQTD 88 (263)
T ss_dssp CSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSCCGG
T ss_pred CEEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCCCHH
Confidence 56789999999999998654 56899997531 1 0 00 01234999999999
Q ss_pred CCEEEEEEEEecCC-------CceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEEEEEecCC-CCeEEEEECCe
Q psy17146 602 LAGRYYCKASVMGF-------PEVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVECSAFSIPP-PEKVTWSYRGE 668 (1011)
Q Consensus 602 d~G~Y~C~a~n~~~-------~~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~-p~~v~W~~~g~ 668 (1011)
|+|.|.|.+.+... ......+.|.|. .+|.|. ......+..|+.++|.|.+.+.++ +..|+| ++.
T Consensus 89 DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W--~~~ 166 (263)
T 3iu4_H 89 DTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAASTKGPSVFPLAPSSKGSTSGTAALGCLVKDYFPEPVTVSW--NSG 166 (263)
T ss_dssp GCEEEEEEEEECC---CEEEEEEECCCEEEEECSSCCBCCEEEEECCCCCC----EEEEEEEEEEEBSSCCEEEE--GGG
T ss_pred HCEEEEEEEEeCCCCccccccceeCCceEEEEecccCCCCEEEEccCccccccCCcEEEEEEEEeEeCCceEEEE--CCc
Confidence 99999999997321 112233466664 456665 334444668999999999998643 348999 554
Q ss_pred EecccC-CCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 669 EIGVGS-SDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 669 ~l~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.+.... ........+ ......+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 167 ~~~~~~~~~~~~~~~~-g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~ 222 (263)
T 3iu4_H 167 ALTSGVHTFPAVLQSS-GLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 222 (263)
T ss_dssp TBCTTEEECCCEECTT-SCEEEEEEEEEETTHHHH-CCCEEEEEEGGGTEEEEEECCC
T ss_pred ccCCceeecCceECCC-CCEEEEEEEEECHhHcCC-CEEEEEEEECCCCcceeEEEcC
Confidence 432100 000000000 001124689999998888 9999999999988776666654
No 427
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.37 E-value=1.4e-11 Score=120.36 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=110.3
Q ss_pred ecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee-cC---CCcEEEeecCCCCCEEEEEEEEecCCCceeeEEE
Q psy17146 548 RARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV-GN---SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 623 (1011)
Q Consensus 548 ~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~-~~---~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 623 (1011)
...|.+..+.+|+++.|.|.+....+..+.|...-..... .. ...|.|.+++. | |.|.|.+.+ .....++.++
T Consensus 3 ~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~~~~~~~l~l~~vs~-~-g~y~C~~~c-~~~~~~~~~~ 79 (185)
T 1iam_A 3 SVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQE-D-SQPMCYSNC-PDGQSTAKTF 79 (185)
T ss_dssp EEESSEEEEETTEEEEEEEEECSSSCSEEEEECSSCEEEECSSSSSEEEEEEEEECS-C-BCCEEEEEC-SSCEEEEECE
T ss_pred EEECCCcEEeCCCCEEEEEEccCCCCccceEEeeCCCccEeccCCceeEEEEEecCc-C-CEEEEEEEC-CCCceEEEEE
Confidence 3456778899999999999997543334777643322223 22 24699999984 4 999999976 4457888999
Q ss_pred EEEcCCCeee--cCCceeeecCCcEEEEEEEEecCCC--CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 624 VYLKGRPTII--SHRTQFGIPGDTARVECSAFSIPPP--EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 624 l~V~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p--~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
|.|..+|... .+....+.+|+.++|.|.+.|..++ +.|+|||+++.+..... ..+....+|++.. .
T Consensus 80 l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~---------~~~~~~~tl~~~~-~ 149 (185)
T 1iam_A 80 LTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---------VGEPAEVTTTVLV-R 149 (185)
T ss_dssp EEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---------CTTTEEEEEEEEC-C
T ss_pred EEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccC---------CCccccEEEEEec-e
Confidence 9998877654 3344458999999999999986443 25899999999864210 0112234677664 4
Q ss_pred CCCCE-EEEEEEEcCCCC
Q psy17146 700 HDHFG-VYNCSVSNPYGS 716 (1011)
Q Consensus 700 ~~d~G-~Y~C~a~N~~G~ 716 (1011)
++|.| .|+|.|.|.++.
T Consensus 150 reD~g~~~sC~A~~~l~~ 167 (185)
T 1iam_A 150 RDHHGAQFSCRTELDLRP 167 (185)
T ss_dssp SSCSSCEEEEEEEEECGG
T ss_pred eccCCCeEEEEEEecCcc
Confidence 45555 999999999983
No 428
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.36 E-value=2.9e-12 Score=114.87 Aligned_cols=95 Identities=22% Similarity=0.445 Sum_probs=79.8
Q ss_pred EcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 626 LKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 626 V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
+..+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+. ...++.+.. ++....|.|.++..+|+|
T Consensus 10 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~~~~~~~~--~~~~~~~~~----~~~~~~L~i~~~~~~D~G 82 (107)
T 3irg_B 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPP-VVVWEKGGQQLA--ASERLSFPA----DGAEHGLLLTAALPTDAG 82 (107)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECC--CCSSEECCE----ETTEEEEEESSCCGGGCE
T ss_pred CCCCCeeEcCCccEEEeCCCeEEEEEEEeecCCC-EEEEEECCeECC--CCCcEEEEe----CCCEEEEEEccCCHHhCE
Confidence 34567776 4567789999999999999999999 999999999987 445666544 334568999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEecC
Q psy17146 705 VYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|+|.|.|..|..+..+.|.|.+
T Consensus 83 ~Y~C~a~n~~g~~~~~~~l~V~~ 105 (107)
T 3irg_B 83 VYVCRARNAAGEAYAAAAVTVLE 105 (107)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEEcCCCcEEEEEEEEEEc
Confidence 99999999999999999998854
No 429
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2.4e-12 Score=113.79 Aligned_cols=92 Identities=25% Similarity=0.384 Sum_probs=77.7
Q ss_pred cCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 627 KGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 627 ~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
..+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+.. ...++.+..+ +.|.|.++..+|+|.
T Consensus 6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p-~v~W~~~~~~~~~-~~~~~~~~~~-------~~L~i~~v~~~d~G~ 76 (100)
T 2edj_A 6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLP-VISWLKEGFTFPG-RDPRATIQEQ-------GTLQIKNLRISDTGT 76 (100)
T ss_dssp CSSCEEEECCCCEEEESSSEEEECCEEECSSCC-EEEEEESSSEESS-SCSSCEECTT-------CCEEEESCCTTTCCE
T ss_pred CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCC-EEEEEECCEECCC-CCCCEEEcCC-------CEEEEccCCcccCEE
Confidence 3577777 4567789999999999999999999 8999999999874 3445555432 579999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEecC
Q psy17146 706 YNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
|+|.|.|..|..+..+.|.|.+
T Consensus 77 Y~C~a~n~~g~~~~~~~l~V~~ 98 (100)
T 2edj_A 77 YTCVATSSSGETSWSAVLDVTE 98 (100)
T ss_dssp EEEEEECSSCCCBCCEEEEEES
T ss_pred EEEEEEcCCCCEEEEEEEEEec
Confidence 9999999999999999998864
No 430
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.36 E-value=1.1e-12 Score=117.89 Aligned_cols=98 Identities=26% Similarity=0.447 Sum_probs=68.2
Q ss_pred EEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 621 EATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 621 ~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
.+.|.+..+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+.. ..++.+... .+.|.|.++.
T Consensus 2 ~~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~i~W~~~~~~~~~--~~~~~~~~~------~~~L~i~~v~ 72 (108)
T 3kvq_A 2 QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPP-QIMWFKDNETLVE--DSGIVLKDG------NRNLTIRRVR 72 (108)
T ss_dssp ---------CCCBSCCCCEEEETTCCEEEECBCC----C-CEEEEESSSBCCC--BTTEEEETT------TTEEEECSCC
T ss_pred ceeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCC-eEEEEECCeEccc--CCCeEEeCC------CcEEEEeecC
Confidence 3567778889887 4567789999999999999999999 8999999998863 334444332 3689999999
Q ss_pred CCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 700 HDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 73 ~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 100 (108)
T 3kvq_A 73 KEDEGLYTCQACSVLGCAKVEAFFIIEG 100 (108)
T ss_dssp GGGCEEEEEEEC----CEEEEEEEEEEC
T ss_pred cccCEEEEEEEEeCCCceEEEEEEEEeC
Confidence 9999999999999999999999999864
No 431
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.4e-12 Score=115.96 Aligned_cols=94 Identities=18% Similarity=0.313 Sum_probs=78.0
Q ss_pred EcCCCeeec----CCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 626 LKGRPTIIS----HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 626 V~~~P~i~~----~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
+..+|.|.. +....+.+|+.++|.|.+.|.|.| .+.|+|+|..+. ..++.+.. ....+.|.|.++..+
T Consensus 18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~l~---~~~~~~~~----~~~~~~L~i~~~~~~ 89 (118)
T 2e7c_A 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRP-QVVWTKGGAPLD---TSRVHVRT----SDFDTVFFVRQAARS 89 (118)
T ss_dssp CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCC-EEEEEETTEECC---CSSCEEEE----CSSEEEEEESSCCTT
T ss_pred eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCC-EEEEEECCEECC---CCcEEEEE----CCCeEEEEECCCChh
Confidence 345788752 356789999999999999999999 999999999986 23444443 233578999999999
Q ss_pred CCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 702 HFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 702 d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
|+|.|+|.|.|..|..+..+.|.|.+
T Consensus 90 D~G~Y~C~a~N~~G~~~~~~~l~V~~ 115 (118)
T 2e7c_A 90 DSGEYELSVQIENMKDTATIRIRVVE 115 (118)
T ss_dssp TCEEEEEEEECSSCEECCEEEEEEEC
T ss_pred cCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 99999999999999999999998864
No 432
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.35 E-value=3.9e-12 Score=115.75 Aligned_cols=96 Identities=27% Similarity=0.497 Sum_probs=80.4
Q ss_pred cCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEE
Q psy17146 627 KGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGV 705 (1011)
Q Consensus 627 ~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~ 705 (1011)
..+|.|. .+.+..+.+|+.++|.|.+.|.|.| .+.|+++|..+.. ...++.+..+ .....+|.|.++..+|+|.
T Consensus 13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p-~v~W~k~~~~~~~-~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~ 87 (116)
T 2kkq_A 13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPP-KLFWKRNNEMVQF-NTDRISLYQD---NTGRVTLLIKDVNKKDAGW 87 (116)
T ss_dssp CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCC-EEEEEETTEECCC-CBTTEEEEEC---TTCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCC-EEEEEECCEECcC-CCCeEEEEeC---CCCeEEEEECCCCcccCEE
Confidence 3467776 4577889999999999999999999 9999999999874 3456666553 2234589999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEecC
Q psy17146 706 YNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 706 Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
|+|.|.|..|..+..+.|.|..
T Consensus 88 Y~C~a~N~~G~~~~~~~l~V~~ 109 (116)
T 2kkq_A 88 YTVSAVNEAGVTTCNTRLDVTA 109 (116)
T ss_dssp EEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEcCCCeEEEEEEEEEeC
Confidence 9999999999999999998854
No 433
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.34 E-value=6e-12 Score=114.03 Aligned_cols=94 Identities=19% Similarity=0.269 Sum_probs=71.7
Q ss_pred CCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEE--ecC-CcCccceeEEEEcCCCCCCCE
Q psy17146 628 GRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSV--LED-PLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 628 ~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~--~~~-~~~~~~~~~L~I~~~~~~d~G 704 (1011)
.||.|.... ...+..+.|.|.+.|.|.| +|+|+|||++|.. ..++.+ ... .......+.|.|.++...|+|
T Consensus 3 ~pP~I~l~~---~~~~~~~~l~c~v~G~P~P-~I~W~knG~~l~~--~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G 76 (126)
T 1he7_A 3 MPASVQLHT---AVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNE--TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 76 (126)
T ss_dssp CCCCCCCCC---CCCCCEEEEEEEECCSSCC-EEEEEETTEECCC--CSSEEEEEECCCSSCCCEEEEEEEESCCGGGCE
T ss_pred CCCEEEccC---CccCccEEEEEEEeeeCCC-eEEEEECCEECCC--CCceeEEEeeccccccccceEEEECcCCCCCCE
Confidence 567763222 3367889999999999999 9999999999974 333322 211 011123578999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEecC
Q psy17146 705 VYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
.|+|+|+|.+|.+++++.|.|.+
T Consensus 77 ~YtC~A~N~~G~~~~t~~l~v~~ 99 (126)
T 1he7_A 77 NYTLLAANPFGQASASIMAAFMD 99 (126)
T ss_dssp EEEEEEEETTEEEEEEEEECCCS
T ss_pred EEEEEEEECCCeEEEEEEEEEEc
Confidence 99999999999999999998753
No 434
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.1e-12 Score=113.88 Aligned_cols=90 Identities=21% Similarity=0.384 Sum_probs=74.8
Q ss_pred EcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 626 LKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 626 V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
+..+|.|. .+....+.+|+.++|.|.+.|.|.| .+.|+|+|..+... .. ... .....|.|.++..+|+|
T Consensus 8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~g~~~~~~--~~-~~~------~~~~~L~i~~v~~~D~G 77 (99)
T 2yr3_A 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVP-RITWLLNGQPIQYA--RS-TCE------AGVAELHIQDALPEDHG 77 (99)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEEECEEEEESCC-CCEEEESSSBCSSC--CC-EEE------TTEEEEEECSCCTTCCB
T ss_pred cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCC-eEEEEECCEECccc--ce-Eee------CCeEEEEECCCChhhCE
Confidence 45677777 4567789999999999999999999 89999999988632 21 221 22578999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEe
Q psy17146 705 VYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.|+|.|.|..|..+..+.|.|
T Consensus 78 ~Y~C~a~N~~g~~~~~~~l~V 98 (99)
T 2yr3_A 78 TYTCLAENALGQVSCSAWVTV 98 (99)
T ss_dssp CEEEEEECSSCEEEEECCEEE
T ss_pred EEEEEEEECCCeEEEEEEEEE
Confidence 999999999999999888876
No 435
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=3.4e-12 Score=115.07 Aligned_cols=95 Identities=26% Similarity=0.331 Sum_probs=79.3
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|+.++|.|.+.|.|.| .|.|+|+|..+.. ...++.+..+ ......|.|.++..+|+|.|
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~~~~-~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y 81 (110)
T 2dm2_A 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKP-KIYWFKDGKQISP-KSDHYTIQRD---LDGTCSLHTTASTLDDDGNY 81 (110)
T ss_dssp CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCC-EEEEECSSCBCCT-TCSSEEEEEC---TTCEEEEEESSCCTTTCSCC
T ss_pred CCCEEEecCcCeEEeCCCeEEEEEEEEecCCC-EEEEEECCEECCC-CCCeEEEEEC---CCcEEEEEECCCChhhCEEE
Confidence 567776 4567789999999999999999999 9999999999874 3456666543 22346899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
+|.|.|..|..+..+.|.|..
T Consensus 82 ~C~a~N~~g~~~~~~~l~V~~ 102 (110)
T 2dm2_A 82 TIMAANPQGRISCTGRLMVQA 102 (110)
T ss_dssp EEEEECTTCCEEECCCEEEEC
T ss_pred EEEEEECCCeEEEEEEEEEEC
Confidence 999999999999999998853
No 436
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.33 E-value=2.4e-12 Score=108.90 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=67.1
Q ss_pred cCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceEEEEEEeC
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARYQCQVSTG 112 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 112 (1011)
++.++.+.+|++++|.|.+.++.+.+.|+|||..+.. .+++.+..++ +.++|+|.+++.+|+|.|+|.|.+.
T Consensus 2 ~lt~v~~~~G~~v~l~C~vs~p~p~v~W~k~g~~l~~------~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~n~ 73 (84)
T 2lu7_A 2 HMTRVRSTPGGDLELVVHLSGPGGPVRWYKDGERLAS------QGRVQLEQAG--ARQVLRVQGARSGDAGEYLCDAPQD 73 (84)
T ss_dssp -CCCEEECTTSCEEEECCCSCCSTTCEEEETTEECCC------CSSEEEEECS--SCEEEEESSCSSTTCEEEEEECTTT
T ss_pred CCeEEEEecCCCEEEEEEECCCCcEEEEEECCEEccc------cccEEEeecC--CeEEEEecCCCCcccEEEEEEECCE
Confidence 3578899999999999999888889999999988743 3567766543 5678999999999999999998552
Q ss_pred CCCCcceeeeEEEEEEEcC
Q psy17146 113 ILGEPAIRSRFATLTVLVP 131 (1011)
Q Consensus 113 ~~~~~~~~s~~~~l~V~~~ 131 (1011)
+..+.|+|.+|
T Consensus 74 --------~~~a~l~V~eP 84 (84)
T 2lu7_A 74 --------SRIFLVSVEEP 84 (84)
T ss_dssp --------CEEEEEEECCC
T ss_pred --------EEEEEEEEECC
Confidence 45578888653
No 437
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.33 E-value=1.4e-11 Score=108.06 Aligned_cols=87 Identities=23% Similarity=0.374 Sum_probs=74.4
Q ss_pred cCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEc
Q psy17146 634 SHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSN 712 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N 712 (1011)
.+.+..+.+|+.++|.|.+.|. |.| .+.|+|++..+. ...++.+.. .+....|.|.++..+|+|.|+|.|.|
T Consensus 7 ~~~~~~v~~G~~v~l~C~~~g~~p~~-~v~W~~~~~~~~--~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~n 79 (97)
T 2bk8_A 7 QIMHAVGEEGGHVKYVCKIENYDQST-QVTWYFGVRQLE--NSEKYEITY----EDGVAILYVKDITKLDDGTYRCKVVN 79 (97)
T ss_dssp CCCCEEECTTCCEEEEEEEESCCTTC-EEEEEETTEECC--SSSSEEEEE----ETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred cCcCEEEcCCCcEEEEEEEeccCCCC-EEEEEECCEECc--CCCCEEEEE----cCCeEEEEEecCChhhCeEEEEEEEC
Confidence 4567789999999999999997 888 999999999887 445666543 22356999999999999999999999
Q ss_pred CCCCeEEEEEEEecC
Q psy17146 713 PYGSDSVEIMLKPQK 727 (1011)
Q Consensus 713 ~~G~~~~~~~l~V~~ 727 (1011)
..|..+..+.|.|.+
T Consensus 80 ~~g~~~~~~~l~V~~ 94 (97)
T 2bk8_A 80 DYGEDSSYAELFVKG 94 (97)
T ss_dssp SSCEEEEEEEEEETT
T ss_pred CCCeEeEEEEEEEEe
Confidence 999999999999864
No 438
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}
Probab=99.33 E-value=1.3e-12 Score=148.97 Aligned_cols=206 Identities=6% Similarity=-0.067 Sum_probs=145.6
Q ss_pred eeeEEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEc
Q psy17146 618 VGAEATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIR 696 (1011)
Q Consensus 618 ~s~~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~ 696 (1011)
-+....+.+..+..+. .|.+..+.+|++++|.|.+. .+ .|.|++||..+... .+ .+..+.|+|.
T Consensus 192 Ws~~~~~~~~~~t~i~v~P~~~~v~~Gs~vtl~C~a~---~~-~I~W~~ng~~i~~~-----ri------~~~~~~L~I~ 256 (488)
T 2q7n_A 192 WSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSP---TK-VLSGQIGNTLRPLI-----HL------YGQTVAIHIL 256 (488)
T ss_dssp CCCCEECCCCCCSSCCEECTTCEEESSCCCEEEECCS---SC-EEEEEETTEECCCE-----EC------SSSCEEEECC
T ss_pred CCChhhcCCcCCCceEECCCCCEEcCCCCEEEEEECC---CC-EEEEEECCEECchh-----hc------cceEEEEEEe
Confidence 3444444555555554 56677789999999999988 45 89999999887632 11 2346899999
Q ss_pred CCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCCCCCCccccccccc
Q psy17146 697 ESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPPPGNGIEHHVTADG 776 (1011)
Q Consensus 697 ~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~s 776 (1011)
++...|+|.|.|.+.+ +.....+.|.| ...|.+|.++........+
T Consensus 257 nl~~sd~g~y~~~C~~--~~~i~~~~l~v--------------------------------~~pP~~P~nl~C~~~~~~s 302 (488)
T 2q7n_A 257 NIPVSENSGTNIIFIT--DDDVYGTVVFA--------------------------------GYPPDVPQKLSCETHDLKE 302 (488)
T ss_dssp SCCCCCSSCEEEEEEE--SSCEEEEEEEE--------------------------------ECCCCCCCSCEEEBSSSSE
T ss_pred CCCcccCCcEEEEEEc--CCeEEEEEEEe--------------------------------eCCCCCCcccEEEEcCCCE
Confidence 9999999988888773 33334555554 2233488999888778889
Q ss_pred ccccc-cCCCC---CCCCcCcceeeecCcc---------------------cc-cccccc---c---CCCCCCCcccccc
Q psy17146 777 EKNQC-KESDN---SSNISDIKLEFRTGSS---------------------VS-NVHLDY---A---GHDSETGSESVHT 824 (1011)
Q Consensus 777 ~~~~W-~~~d~---~s~I~~Y~ve~~~~~~---------------------~p-~~~Y~f---A---~G~g~~ss~~~~t 824 (1011)
+.++| ++.+. |++++.|.|+++.... .+ .+.|.| | .|.+ ++...+.+
T Consensus 303 vtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~~~~~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~-~S~~~~~~ 381 (488)
T 2q7n_A 303 IICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQA-QSAVVINV 381 (488)
T ss_dssp EEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECSSCCCSSCEEEEEECCSSCCCCEEEEEEEETTEEE-EEEEECCG
T ss_pred EEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCccccccCCceEEEEEcCCCCccEEEEEEEEEeCCCCc-cceEEEEe
Confidence 99999 76665 3689999999864311 23 488999 5 5652 33455666
Q ss_pred cccccccccccCCcccccccccCcCCCCCCCCCCCCCCCccEEEEEeeeccCCC
Q psy17146 825 RIGVPLAGPVPMDQRYHRYSSADFADAVFPSLKPDGHNNNGFVFSDFIRDYNQT 878 (1011)
Q Consensus 825 ~~~~P~~~P~~~~~~~~~~~~~~~~~i~W~p~~~~~~ng~~~gY~v~~r~~~~~ 878 (1011)
.+.++..||.++.+... +.+...|+|+||.. .+|.+++|.|+||+.+..
T Consensus 382 ~~~v~P~PP~nl~v~~~---s~~sl~LsW~pP~~--~~g~~l~YeV~Yr~~~~~ 430 (488)
T 2q7n_A 382 TERVAPHDPTSLKVKDI---NSTVVTFSWYLPGN--FTKINLLCQIEICKANSK 430 (488)
T ss_dssp GGTBCCCCCEEEEEEEC---STTCEEEEEEEEEE--CSSSEEEEEEEEBCTTSC
T ss_pred cCCCCCCCCeEEEEEec---CCCEEEEEEeCCCC--CCCcceEEEEEEEECCCC
Confidence 77788889998876551 12334569999754 468899999999987654
No 439
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.32 E-value=2e-11 Score=133.01 Aligned_cols=192 Identities=14% Similarity=0.181 Sum_probs=117.0
Q ss_pred cCCceeEEecCcEEEEEEEcCC---------------CCeeEEeeCC--ee--cCCccc-----C-CCC-cceEEeec--
Q psy17146 33 EPQDQTAVVGSRVTLPCRVIDK---------------TGVLQWTKDD--FA--LGPHRN-----L-SGF-DRYAMIGS-- 84 (1011)
Q Consensus 33 ~p~~~~v~~G~~v~L~C~v~~~---------------~~~v~W~k~~--~~--l~~~~~-----~-~~~-~r~~i~~~-- 84 (1011)
.+..+.+.+|++|+|+|..... ...+.|++.. .. +..+.. . ... .+..+...
T Consensus 164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~ 243 (401)
T 3f8u_B 164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD 243 (401)
T ss_dssp SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence 5678999999999999998731 2369999753 21 111110 0 011 12222211
Q ss_pred -----CCCceeEEEEeecccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCC-cEEEEEEcc
Q psy17146 85 -----DEEGDYSLEIYPVMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR-EIELECISA 158 (1011)
Q Consensus 85 -----~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~-~v~L~C~~~ 158 (1011)
...++.+|+|.+++.+|+|.|+|.+.+.. ......+.|.|..+|.. .+...+...+..|+ .+.|.|.+.
T Consensus 244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~----~~~~~~v~L~V~~pP~V-~v~p~~~~~~~~G~~~vtL~C~a~ 318 (401)
T 3f8u_B 244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPY----LQGQVTLELAVYKPPKV-SLMPATLARAAPGEAPPELLCLVS 318 (401)
T ss_dssp CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETT----EEEEEEEEEEEEBCCEE-EEESSSCCCCCTTCCCCCEEEEEE
T ss_pred cccccccCCcEEEEECcCCHhhCceEEEEEEecc----cceeEEEEEeeccCCeE-eeccCcceeecCCCccEEEEEEec
Confidence 12367899999999999999999998753 23455678888875431 22222222245676 799999977
Q ss_pred CCCCC--cEEEEE-eCCc--e-eeec-ee-EEEeeecCCceEEEEEEEEEeeccC-cCCcEEEEEEEeCCCCc-eeEEEE
Q psy17146 159 NGKPP--AEITWI-DGTG--T-VMSN-VR-VTEEASVDGRRTTVKSTLVLTPKKE-HHNTTFTCQAQNTADRT-YKVARL 228 (1011)
Q Consensus 159 ~g~P~--~~i~W~-k~~~--~-l~~~-~~-~~~~~~~~~~~~~~~~~L~I~~~~~-~d~G~Y~C~a~n~~g~~-~~s~~v 228 (1011)
+.+|. ++++|+ |++. . +... .. ...........+...+.|.|...+. ++.+.|+|.+.|..-.. .++..+
T Consensus 319 GfyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs~sV 398 (401)
T 3f8u_B 319 HFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEV 398 (401)
T ss_dssp EEBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEEEEE
T ss_pred CCcCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCCCCcceEEE
Confidence 66787 899995 8752 1 2111 11 1111122233567778899887643 44569999999976332 334444
Q ss_pred E
Q psy17146 229 K 229 (1011)
Q Consensus 229 ~ 229 (1011)
+
T Consensus 399 t 399 (401)
T 3f8u_B 399 T 399 (401)
T ss_dssp E
T ss_pred E
Confidence 4
No 440
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.32 E-value=5.3e-12 Score=115.43 Aligned_cols=101 Identities=19% Similarity=0.183 Sum_probs=75.9
Q ss_pred EEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 622 ATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 622 ~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
+.|.|..||.|.......+ .+...|.|.+.|.|.| .++|+|+|+.+... .++.+..........+.|.|.++..+
T Consensus 1 v~L~V~~pP~i~~~~~~~~--~~~~~l~C~~~g~P~p-~i~W~k~g~~l~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~ 75 (118)
T 1wwc_A 1 VALTVYYPPRVVSLEEPEL--RLEHCIEFVVRGNPPP-TLHWLHNGQPLRES--KIIHVEYYQEGEISEGCLLFNKPTHY 75 (118)
T ss_dssp ---CCCCCCCCCCCCCCCC--CCEEEEEEEEECSSCC-EEEEEETTEECCCS--SSEEEEEEECSSEEEEEEEEESCCGG
T ss_pred CEEEEecCCceeccCCCee--ccceEEEEEeeeeCCC-eEEEEECCEECCCC--CceeEEEeccCccccEEEEECCCChh
Confidence 3577889999875543332 3667899999999999 99999999999753 33333221111123579999999999
Q ss_pred CCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 702 HFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 702 d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
|+|.|+|.|.|.+|..++++.|.|..
T Consensus 76 d~G~Y~C~a~N~~G~~~~~~~l~v~~ 101 (118)
T 1wwc_A 76 NNGNYTLIAKNPLGTANQTINGHFLK 101 (118)
T ss_dssp GCEEEEEEEEETTEEEEEEEEECCSC
T ss_pred cCEEEEEEEECCCCeEeeEEEEEEcc
Confidence 99999999999999999999998754
No 441
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.32 E-value=5.5e-12 Score=121.45 Aligned_cols=101 Identities=22% Similarity=0.306 Sum_probs=83.2
Q ss_pred EEEEEEcCCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCC
Q psy17146 621 EATVYLKGRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESR 699 (1011)
Q Consensus 621 ~~~l~V~~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 699 (1011)
...+.+..+|.|. .+....+..|+.++|.|.+.|.|.| .|.|+|+|..+. ...++.+... ......|.|.++.
T Consensus 33 ~~~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p-~v~W~k~g~~~~--~~~~~~~~~~---~~~~~~L~I~~v~ 106 (154)
T 1fhg_A 33 VAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDP-EVMWFKDDNPVK--ESRHFQIDYD---EEGNCSLTISEVC 106 (154)
T ss_dssp -CCCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCC-EEEEEETTEECC--CSSSEEEEEC---TTCEEEEEESSCC
T ss_pred hhcccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCC-EEEEEECCEECC--CCCcEEEEEC---CCCeEEEEECCCC
Confidence 3445566778887 4467789999999999999999999 999999999987 4456666532 2235799999999
Q ss_pred CCCCEEEEEEEEcCCCCeEEEEEEEecC
Q psy17146 700 HDHFGVYNCSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 700 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 727 (1011)
..|+|.|+|.|.|..|.....+.|.|..
T Consensus 107 ~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 134 (154)
T 1fhg_A 107 GDDDAKYTCKAVNSLGEATCTAELLVET 134 (154)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred hhcCEEEEEEEEECCCeEEEEEEEEEeC
Confidence 9999999999999999999999998854
No 442
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.32 E-value=2.2e-12 Score=115.32 Aligned_cols=92 Identities=28% Similarity=0.392 Sum_probs=78.2
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|++++|.|.+.|.|.| .+.|+|+|..+. ...++.+.. ....+.|.|.++..+|+|.|
T Consensus 13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p-~v~W~k~g~~l~--~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y 85 (106)
T 1nct_A 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVP-TVTWLRKGQVLS--TSARHQVTT----TKYKSTFEISSVQASDEGNY 85 (106)
T ss_dssp CCCEEEECCCCEEESSSSCEECCEEEECSSCC-BCCBCSSSSCCT--TCSSEEEEE----CSSEEEEEECCCCSSCCSEE
T ss_pred CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCC-EEEEEECCEECC--CCCCEEEEE----CCCEEEEEECcCCchhCEEE
Confidence 356665 5567889999999999999999999 999999999887 455666654 23357999999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEec
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|.|.|..|..+..+.|.|+
T Consensus 86 ~C~a~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 86 SVVVENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp EECCBCSSCBCCEEEEEEEC
T ss_pred EEEEEeCCCeEEEEEEEEEE
Confidence 99999999999999999885
No 443
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.32 E-value=1.2e-11 Score=112.14 Aligned_cols=100 Identities=23% Similarity=0.273 Sum_probs=82.2
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
..+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. ..|+.+... .+..+|+|.+++.+|+|
T Consensus 5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~------~~~~~~~~~--~~~~~L~I~~v~~~D~G 76 (114)
T 2cqv_A 5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE------SEHMKVENS--ENGSKLTILAARQEHCG 76 (114)
T ss_dssp CCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCC------SSSEEEEEC--SSEEEEEETTCCTTTCE
T ss_pred CCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcC------CCCEEEEEc--CCEEEEEECCCChhcCE
Confidence 45799999999999999999999999998 6779999999976632 346666543 34668999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCe
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPPR 136 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~ 136 (1011)
.|+|.+.|.. +..+..+.|.|...|.+|.
T Consensus 77 ~Y~C~a~N~~----g~~~~~~~l~V~~~p~~P~ 105 (114)
T 2cqv_A 77 CYTLLVENKL----GSRQAQVNLTVVDKPDPPA 105 (114)
T ss_dssp EEEEEEECSS----CEEECCEEEEEECSCSCCC
T ss_pred EEEEEEEECC----CcEEEEEEEEEECCCCCCC
Confidence 9999999863 3466789999998877654
No 444
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.31 E-value=5.3e-12 Score=114.54 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=76.6
Q ss_pred cceeecCCceeEEecCcEEEEEEEcC----CCCeeEEeeCCeecCCcccCCCCcceEEeec----CCCceeEEEEeeccc
Q psy17146 28 QKFAMEPQDQTAVVGSRVTLPCRVID----KTGVLQWTKDDFALGPHRNLSGFDRYAMIGS----DEEGDYSLEIYPVML 99 (1011)
Q Consensus 28 p~~~~~p~~~~v~~G~~v~L~C~v~~----~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~----~~~~~~~L~I~~v~~ 99 (1011)
+.|..+|+++.+.+|++++|.|.+.+ +.+.|.|||+....... ....++.+... .....++|+|.+++.
T Consensus 8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 84 (126)
T 2dav_A 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLAS---KAGKHLQLKETFERHSRVYTFEMQIIKAKD 84 (126)
T ss_dssp CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHH---HTTSSEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCC---CCCceEEEccccccccccceEEEEEccCCc
Confidence 66999999999999999999999975 57799999975211000 01234444221 112357899999999
Q ss_pred CCCceEEEEEEeCCCCCcceeeeEEEEEEEc-CCCCCee
Q psy17146 100 DDDARYQCQVSTGILGEPAIRSRFATLTVLV-PPDPPRI 137 (1011)
Q Consensus 100 ~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~-~p~~~~i 137 (1011)
+|+|.|+|++.|.. +..+..+.|+|.+ ++..|.+
T Consensus 85 ~DaG~Y~Cevsn~~----g~~~~~~~L~V~~~~~~~p~~ 119 (126)
T 2dav_A 85 NFAGNYRCEVTYKD----KFDSCSFDLEVHESTGTTPNI 119 (126)
T ss_dssp TSCEEEEEEEECSS----CEEEECCEEEEECCCCSCCCC
T ss_pred ccCEEEEEEEEeCC----CcEEEEEEEEEEecCCCCCeE
Confidence 99999999999963 4578889999999 6666554
No 445
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.31 E-value=3.4e-12 Score=119.47 Aligned_cols=86 Identities=22% Similarity=0.354 Sum_probs=71.4
Q ss_pred CCceeeecCCcEEEEEEEEecCCCCeEEEEECC----------------------------eEecccCCCCeEEecCCcC
Q psy17146 635 HRTQFGIPGDTARVECSAFSIPPPEKVTWSYRG----------------------------EEIGVGSSDDYSVLEDPLK 686 (1011)
Q Consensus 635 ~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g----------------------------~~l~~~~~~~~~~~~~~~~ 686 (1011)
+.+..+.+|++++|.|.+.|.|.| .|+|+|+| ..+.. ...++.+..
T Consensus 25 p~~~~v~~G~~v~L~C~~~G~P~P-~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~r~~i~~---- 98 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPISGDPAP-TVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCE-TEGRVRVET---- 98 (139)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCC-EEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCS-CSSSCEEEE----
T ss_pred CCCEEEeCCCeEEEEEEEEEcCCC-eEEEEECCcccccccccccccccccccccccccccceeecC-CCCeEEEEe----
Confidence 456789999999999999999999 99999999 33321 334555543
Q ss_pred ccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 687 EGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 687 ~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
.+..+.|.|.++..+|+|.|+|.|.|.+|.+++++.|.|.
T Consensus 99 ~~~~s~L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~V~ 138 (139)
T 1gxe_A 99 TKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138 (139)
T ss_dssp ETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CCCEEEEEECCCCcccCEEEEEEEEeCCceEEEEEEEEEE
Confidence 2335789999999999999999999999999999999874
No 446
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.31 E-value=4.1e-12 Score=115.65 Aligned_cols=95 Identities=20% Similarity=0.312 Sum_probs=80.1
Q ss_pred EEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee--------cCC-C--cEEEeecCCCCCEEE
Q psy17146 538 TLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV--------GNS-P--NLTLLMTSDDLAGRY 606 (1011)
Q Consensus 538 ~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~--------~~~-~--~L~I~~v~~~d~G~Y 606 (1011)
......+|.|...|.++.+.+|+.++|.|.+.|.|.+.+.|+|++..+.. .+. + +|.|.++..+|+|.|
T Consensus 9 ~~~~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (116)
T 2kkq_A 9 SHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWY 88 (116)
T ss_dssp CCCCCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEE
T ss_pred ccCCCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEE
Confidence 33445689999999999999999999999999999999999999854332 111 2 899999999999999
Q ss_pred EEEEEecCCCceeeEEEEEEcCCCeee
Q psy17146 607 YCKASVMGFPEVGAEATVYLKGRPTII 633 (1011)
Q Consensus 607 ~C~a~n~~~~~~s~~~~l~V~~~P~i~ 633 (1011)
+|.|.| ..|..+..+.|.|..+|...
T Consensus 89 ~C~a~N-~~G~~~~~~~l~V~~~p~~~ 114 (116)
T 2kkq_A 89 TVSAVN-EAGVTTCNTRLDVTARPNQT 114 (116)
T ss_dssp EEEEEE-TTEEEEEEEEEEEECCSCCC
T ss_pred EEEEEc-CCCeEEEEEEEEEeCCCCCC
Confidence 999999 67788899999998887643
No 447
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=7.1e-12 Score=110.37 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=73.2
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+.+..+.+|++++|.|.+ .|.| .++|+|||..+. ...++.+.. ++....|.|.++..+|+|.|
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p-~v~W~k~g~~l~--~~~r~~i~~----~~~~~~L~I~~v~~~D~G~Y 76 (100)
T 2yuz_A 6 SGLKILTPLTDQTVNLGKEICLKCEI--SENI-PGKWTKNGLPVQ--ESDRLKVVQ----KGRIHKLVIANALTEDEGDY 76 (100)
T ss_dssp CCCCCSBCCCCEEEETTSCCCEEEEC--SSCC-CEEEEETTEECC--CCSSEEEEE----CSSEEEEEESSCCGGGCSEE
T ss_pred CCCEEeccCCceEEcCCCCEEEEEEe--CCCC-eEEEEECCEECC--CCCcEEEEE----eCCEEEEEECCCChhhCEEE
Confidence 356666 4567889999999999999 7888 899999999997 456777765 34467899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEecCC
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
+|.|.|. ..+.++.|.|.++
T Consensus 77 ~C~a~N~--~~~~~a~L~V~~~ 96 (100)
T 2yuz_A 77 VFAPDAY--NVTLPAKVHVISG 96 (100)
T ss_dssp EEEESSS--CCCEEEEEEEECC
T ss_pred EEEEcCC--CeeEEEEEEEeCC
Confidence 9999998 5566677777543
No 448
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.30 E-value=6.6e-12 Score=108.02 Aligned_cols=86 Identities=17% Similarity=0.261 Sum_probs=65.2
Q ss_pred ccceeecCCcee--EEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCce
Q psy17146 27 EQKFAMEPQDQT--AVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDAR 104 (1011)
Q Consensus 27 ~p~~~~~p~~~~--v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~ 104 (1011)
|+.|..+++++. +.+|++++|.|.+.++.+.+.|+|||..+. ..+++.+..++ +.++|.|.+++.+|+|.
T Consensus 4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~p~~~v~W~k~g~~i~------~~~~~~i~~~~--~~~~L~I~~v~~~D~G~ 75 (91)
T 2lvc_A 4 PVHIVDPREHVFVHAITSECVMLACEVDREDAPVRWYKDGQEVE------ESDFVVLENEG--PHRRLVLPATQPSDGGE 75 (91)
T ss_dssp CCCCCBCCSCEEEECCTTCCEEEEEECSCTTSCCEEEETTSCCC------CCSSCEEEEET--TEEEEEESSCCGGGCSE
T ss_pred CcEEeccCCCeEEEEECCCcEEEEEEECCCCcEEEEEECCEEee------eeeeeeEEecC--CeEEEEeCCCChhhcEE
Confidence 444444445544 458999999999988888999999997764 33577776543 56789999999999999
Q ss_pred EEEEEEeCCCCCcceeeeEEEEEE
Q psy17146 105 YQCQVSTGILGEPAIRSRFATLTV 128 (1011)
Q Consensus 105 Y~C~~~~~~~~~~~~~s~~~~l~V 128 (1011)
|+|.|.|. +..+.|+|
T Consensus 76 Y~C~a~n~--------~~~~~ltV 91 (91)
T 2lvc_A 76 FQCVAGDE--------CAYFTVTI 91 (91)
T ss_dssp EEEECSSC--------EEEEEEEC
T ss_pred EEEEEcce--------EEEEEEEC
Confidence 99999662 44566654
No 449
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.30 E-value=6.4e-12 Score=109.76 Aligned_cols=86 Identities=20% Similarity=0.332 Sum_probs=72.8
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.||.|. .+....+.+|+.++|.|.+.|.| | .+.|+|+|..+. ...++.+. .+.|.|.++..+|+|.|
T Consensus 8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p-~i~W~k~g~~~~--~~~~~~~~--------~~~L~i~~~~~~D~G~Y 75 (95)
T 2ckn_A 8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-Q-SINWLRDGVQLV--ESNRTRIT--------GEEVEVRDSIPADSGLY 75 (95)
T ss_dssp CSCCBTTBBCCEEECTTSCEEEECCEESSC-C-EEEEEBTTBCCC--CCSSEEEC--------SSEEEESSCCGGGSEEE
T ss_pred CCCEEEcCcceEEEcCCCeEEEEEECCCCC-C-ceEEEECCEecC--CCCCEEEe--------CCEEEECCCChHHCEEE
Confidence 456666 44677899999999999999998 7 999999999887 34455553 26899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEe
Q psy17146 707 NCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V 725 (1011)
+|.|.|..|..+..+.|.|
T Consensus 76 ~C~a~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 76 ACVTSSPSGSDTTYFSVNV 94 (95)
T ss_dssp EEEEEETTEEEEEEEEEEE
T ss_pred EEEeccCCCcEEEEEEEEE
Confidence 9999999999999988876
No 450
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=9.9e-12 Score=112.00 Aligned_cols=103 Identities=25% Similarity=0.333 Sum_probs=83.1
Q ss_pred ceeeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 23 AQYREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 23 ~~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
....+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. ..+|+.+..+ ..+.++|.|.+++.+|
T Consensus 4 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~-----~~~~~~~~~~-~~~~~~L~i~~v~~~D 77 (110)
T 2dm2_A 4 GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP-----KSDHYTIQRD-LDGTCSLHTTASTLDD 77 (110)
T ss_dssp CCSCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCT-----TCSSEEEEEC-TTCEEEEEESSCCTTT
T ss_pred CCCCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCC-----CCCeEEEEEC-CCcEEEEEECCCChhh
Confidence 3456799999999999999999999999997 6779999999977643 1356666554 3456789999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCC
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~ 135 (1011)
+|.|+|.+.|.. +..+..+.|.|..++.+|
T Consensus 78 ~G~Y~C~a~N~~----g~~~~~~~l~V~~~~~~P 107 (110)
T 2dm2_A 78 DGNYTIMAANPQ----GRISCTGRLMVQAVNSGP 107 (110)
T ss_dssp CSCCEEEEECTT----CCEEECCCEEEECCSCCS
T ss_pred CEEEEEEEEECC----CeEEEEEEEEEECCCCCC
Confidence 999999999864 335677889998877655
No 451
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=8.3e-12 Score=110.29 Aligned_cols=87 Identities=20% Similarity=0.272 Sum_probs=76.7
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
.+|.|...|.+..+.+|+.++|.|.+.|.|.+.+.|+|++..+. ...+++|.|.++..+|+|.|+|.|.| ..
T Consensus 7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n-~~ 85 (100)
T 2edj_A 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATS-SS 85 (100)
T ss_dssp SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEEC-SS
T ss_pred CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEc-CC
Confidence 47888889999999999999999999999999999999986543 34567899999999999999999999 57
Q ss_pred CceeeEEEEEEcCCC
Q psy17146 616 PEVGAEATVYLKGRP 630 (1011)
Q Consensus 616 ~~~s~~~~l~V~~~P 630 (1011)
+..+..+.|.|.++|
T Consensus 86 g~~~~~~~l~V~~~~ 100 (100)
T 2edj_A 86 GETSWSAVLDVTESG 100 (100)
T ss_dssp CCCBCCEEEEEESCC
T ss_pred CCEEEEEEEEEecCC
Confidence 788889999998765
No 452
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.29 E-value=1.4e-11 Score=106.70 Aligned_cols=87 Identities=21% Similarity=0.282 Sum_probs=69.4
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+.+..+.+|++++|.|.+.+ |.+ .+.|+|||.++. .+.++.+.. ++....|.|.++..+|+|.|
T Consensus 4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~-~v~W~k~g~~i~--~~~~~~i~~----~g~~~~L~I~~v~~~D~G~Y 75 (93)
T 1waa_A 4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDV-HGQWKLKGQPLA--ASPDCEIIE----DGKKHILILHNCQLGMTGEV 75 (93)
T ss_dssp CCCCEEECCCCEEEETTSCEEEEEEESS-SSC-CCEEEETTEECC--CBTTEEEEE----ETTEEEEEECSCCGGGCEEE
T ss_pred CCcEeeccCcceEEeCCCCEEEEEEECC-CCC-eEEEEECCEECc--CCCCEEEEE----ECCEEEEEECCCChhhCEEE
Confidence 356666 456788999999999999986 456 799999999997 445677654 34457999999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEec
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|.|.|. ..++.|.|.
T Consensus 76 ~C~a~n~----~~sa~L~V~ 91 (93)
T 1waa_A 76 SFQAANT----KSAANLKVK 91 (93)
T ss_dssp EEEETTE----EEEEEEEEE
T ss_pred EEEECCC----cEEEEEEEE
Confidence 9999885 456666664
No 453
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.29 E-value=7.7e-12 Score=105.74 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=65.7
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
.+..+.+|+.++|.|.+.+ |.| .|+|+|||++|. .+.++.+.. ++....|.|.++..+|+|.|+|.|.|
T Consensus 4 t~v~~~~G~~v~l~C~vs~-p~p-~v~W~k~g~~l~--~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C~a~n--- 72 (84)
T 2lu7_A 4 TRVRSTPGGDLELVVHLSG-PGG-PVRWYKDGERLA--SQGRVQLEQ----AGARQVLRVQGARSGDAGEYLCDAPQ--- 72 (84)
T ss_dssp CCEEECTTSCEEEECCCSC-CST-TCEEEETTEECC--CCSSEEEEE----CSSCEEEEESSCSSTTCEEEEEECTT---
T ss_pred eEEEEecCCCEEEEEEECC-CCc-EEEEEECCEEcc--ccccEEEee----cCCeEEEEecCCCCcccEEEEEEECC---
Confidence 4567889999999999966 888 899999999998 456777665 34467899999999999999999855
Q ss_pred CeEEEEEEEecC
Q psy17146 716 SDSVEIMLKPQK 727 (1011)
Q Consensus 716 ~~~~~~~l~V~~ 727 (1011)
++.++.|.|++
T Consensus 73 -~~~~a~l~V~e 83 (84)
T 2lu7_A 73 -DSRIFLVSVEE 83 (84)
T ss_dssp -TCEEEEEEECC
T ss_pred -EEEEEEEEEEC
Confidence 56777787754
No 454
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-11 Score=112.55 Aligned_cols=112 Identities=20% Similarity=0.205 Sum_probs=85.9
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
...+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. ...|+.+..+. +|.|.+++.+|+
T Consensus 5 ~~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~-----~~~~~~~~~~~-----~L~i~~v~~~D~ 74 (118)
T 2eo9_A 5 SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVST-----QDSRIKQLENG-----VLQIRYAKLGDT 74 (118)
T ss_dssp CCCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCT-----TSTTEEEEETT-----EEEEESCCGGGC
T ss_pred CCCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcC-----CCCeEEEccCC-----EEEEccCCcCCC
Confidence 345789999999999999999999999987 6779999999977632 23566655432 799999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCC
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDR 149 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~ 149 (1011)
|.|+|.+.|.. +..+..+.|+|...+.+.....+..+.+.+|.
T Consensus 75 G~Y~C~a~n~~----g~~~~~~~l~V~~~~~p~~~~~~~~~~~~~G~ 117 (118)
T 2eo9_A 75 GRYTCIASTPS----GEATWSAYIEVQEFGVPVQPPRPTDPNLIPSA 117 (118)
T ss_dssp CCEEEEEECSS----CEEEEECCEEEECCSCCCCCCCCCCCCCCCCC
T ss_pred EEEEEEEEcCC----CcEEEEEEEEEEeCCCCccCCCCCCCccCCCC
Confidence 99999999863 34566788999887765444444455555553
No 455
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.29 E-value=1.8e-11 Score=108.69 Aligned_cols=95 Identities=24% Similarity=0.316 Sum_probs=76.4
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
.++.|...|.++.+.+|++++|.|.+.++.+.+.|+|++..+..... .|+.+..++ ...+|.|.+++.+|+|.|
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~v~W~k~g~~l~~~~~----~~~~~~~~~--~~~~L~I~~~~~~D~G~Y 79 (103)
T 1x44_A 6 SGIMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPK----SRYRIRVEG--KKHILIIEGATKADAAEY 79 (103)
T ss_dssp SSCCCSBCCCCEEEETTEEEEEEEECSSSSCCCEEEETTEECCCSTT----CSEEEEEET--TEEEEEEEEECTTTCSEE
T ss_pred CCceeeccCCCEEEECCCCEEEEEEecCCCCeEEEEECCEECCCCCc----eEEEEEEcC--CEEEEEECCCCcccCEEE
Confidence 34558889999999999999999999987789999999987743321 166666443 456899999999999999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCC
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDP 134 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~ 134 (1011)
+|.+.| .+..+.|+|..+|.+
T Consensus 80 ~C~a~n--------~~~~~~l~V~~~p~p 100 (103)
T 1x44_A 80 SVMTTG--------GQSSAKLSVDLKSGP 100 (103)
T ss_dssp EEEETT--------EEEEEEEEEECCCSC
T ss_pred EEEECC--------CcEEEEEEEeCCCCC
Confidence 999976 356788999887654
No 456
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.29 E-value=2.3e-11 Score=109.09 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=72.2
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCC---CCeEEEEECCeEecc-cCCCCeEEecCC--cCccceeEEEEcCCCCCC
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPP---PEKVTWSYRGEEIGV-GSSDDYSVLEDP--LKEGIKSTLIIRESRHDH 702 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~---p~~v~W~~~g~~l~~-~~~~~~~~~~~~--~~~~~~~~L~I~~~~~~d 702 (1011)
|.|. .+....+.+|++++|.|.+.|.|. | .|.|+|++..... ....++.+.... ........|.|.+++.+|
T Consensus 5 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 83 (108)
T 3cx2_A 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPP-VVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83 (108)
T ss_dssp CSCSBCCCCEEEETTCCEEEEEEEECC-CCSCC-EEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred cEEEeCCCcEEEeCCCCEEEEEEECCCccCCCc-EEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence 5555 456778999999999999999998 8 9999998733221 123355443210 011235789999999999
Q ss_pred CEEEEEEEEcCCCCeEEEEEEEec
Q psy17146 703 FGVYNCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 703 ~G~Y~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|.|+|.|.|..|.+++.+.|.|.
T Consensus 84 ~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 84 TGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CEEEEEEEecCCCceEEEEEEEEe
Confidence 999999999999999999999884
No 457
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.29 E-value=3.8e-11 Score=130.88 Aligned_cols=172 Identities=15% Similarity=0.200 Sum_probs=112.2
Q ss_pred CCceEEEcCCCcEEEEEEEecCC--------------CCeEEEEecC-------------Cc----------e-e-----
Q psy17146 550 RPYSVQVDRGAGVNLLCDVDGNP--------------APEITWIHED-------------SD----------K-V----- 586 (1011)
Q Consensus 550 ~p~~~~v~~G~~~~l~C~~~g~p--------------~p~v~W~k~~-------------~~----------~-~----- 586 (1011)
.+..+.+.+|++++|.|.....+ ...+.|++.. .. . .
T Consensus 164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~ 243 (401)
T 3f8u_B 164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD 243 (401)
T ss_dssp SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence 34568899999999999987543 3479998642 10 0 0
Q ss_pred ------ecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCCeeecC-Ccee-eecCC-cEEEEEEEEec-C
Q psy17146 587 ------VGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRPTIISH-RTQF-GIPGD-TARVECSAFSI-P 656 (1011)
Q Consensus 587 ------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~~-~~~~-v~~G~-~v~L~C~~~g~-p 656 (1011)
...+.+|+|.+++.+|+|.|.|.+.| ..+.....+.|.|..+|.+... .... +..|+ .++|.|.+.|. |
T Consensus 244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~-~~~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP 322 (401)
T 3f8u_B 244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHL-PYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYP 322 (401)
T ss_dssp CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEE-TTEEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBS
T ss_pred cccccccCCcEEEEECcCCHhhCceEEEEEEe-cccceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcC
Confidence 01235799999999999999999998 4556667888999999998743 2222 45686 89999999997 5
Q ss_pred CC-CeEEEE-ECCe---EecccCC---CCeEEecCCcCccceeEEEEcCCCCCCC-EEEEEEEEcCC---CCeEEEEEE
Q psy17146 657 PP-EKVTWS-YRGE---EIGVGSS---DDYSVLEDPLKEGIKSTLIIRESRHDHF-GVYNCSVSNPY---GSDSVEIML 723 (1011)
Q Consensus 657 ~p-~~v~W~-~~g~---~l~~~~~---~~~~~~~~~~~~~~~~~L~I~~~~~~d~-G~Y~C~a~N~~---G~~~~~~~l 723 (1011)
.. .+|+|+ +|+. .+..... .......+ ......+.|.|.....++. +.|+|.+.|.. |..+.+++|
T Consensus 323 ~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~D-GTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs~sVtL 400 (401)
T 3f8u_B 323 SGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSD-GSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTL 400 (401)
T ss_dssp STTCEEEEEEESSSSCSCEECCSEEEECCCEECTT-SCEEEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEEEEEEC
T ss_pred CCCcEEEEEecCCCCCceecccccccccccccCCC-ceEEEEEEEEEccCccccCCCEEEEEEEcCCCCCCcceEEEEe
Confidence 41 499995 8752 2211000 00000000 0011245777777644344 59999999987 555655554
No 458
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=4.5e-12 Score=114.28 Aligned_cols=93 Identities=23% Similarity=0.431 Sum_probs=76.0
Q ss_pred CCCeee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEE
Q psy17146 628 GRPTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVY 706 (1011)
Q Consensus 628 ~~P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y 706 (1011)
.+|.|. .+....+.+|+.++|.|.+.|.|.| .|.|+|+|..+... .+..+... .....+|.|.++..+|+|.|
T Consensus 8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~g~~~~~~--~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y 81 (110)
T 2dm3_A 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTP-DLSWQLDGKPVRPD--SAHKMLVR---ENGVHSLIIEPVTSRDAGIY 81 (110)
T ss_dssp CCCEEEECCCEEEEESSSCBCCEEEEECSSCC-EEECBBSSSBCCCC--SSEEEEEC---TTSCEEEEESSCCGGGCSBB
T ss_pred CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCC-EEEEEECCEECCCC--CceEEEEe---cCCeEEEEEeeCCcccCEEE
Confidence 467776 4567789999999999999999999 99999999988742 22222221 22356999999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEec
Q psy17146 707 NCSVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 707 ~C~a~N~~G~~~~~~~l~V~ 726 (1011)
+|.|.|..|..+..+.|.|.
T Consensus 82 ~C~a~n~~g~~~~~~~l~V~ 101 (110)
T 2dm3_A 82 TCIATNRAGQNSFSLELVVA 101 (110)
T ss_dssp CEEEECSSCEEEECCEEEEE
T ss_pred EEEEECCCCEEEEEEEEEEe
Confidence 99999999999999999885
No 459
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.28 E-value=5.1e-12 Score=113.48 Aligned_cols=94 Identities=22% Similarity=0.392 Sum_probs=68.3
Q ss_pred EEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEE
Q psy17146 537 ETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCK 609 (1011)
Q Consensus 537 ~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~ 609 (1011)
..|.+..+|.|...+.+..+.+|+.++|.|.+.|.|.+.+.|+|++..+. ...++.|.|.++..+|+|.|+|.
T Consensus 3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 82 (108)
T 3kvq_A 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ 82 (108)
T ss_dssp --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEE
T ss_pred eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEE
Confidence 45667789999999999999999999999999999999999999986543 23467899999999999999999
Q ss_pred EEecCCCceeeEEEEEEcCCCe
Q psy17146 610 ASVMGFPEVGAEATVYLKGRPT 631 (1011)
Q Consensus 610 a~n~~~~~~s~~~~l~V~~~P~ 631 (1011)
|.| ..|.....+.|.|..+|.
T Consensus 83 a~n-~~g~~~~~~~l~V~~~~~ 103 (108)
T 3kvq_A 83 ACS-VLGCAKVEAFFIIEGAQE 103 (108)
T ss_dssp EC-----CEEEEEEEEEEC---
T ss_pred EEe-CCCceEEEEEEEEeCCCc
Confidence 999 678888999999988775
No 460
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.28 E-value=1.3e-10 Score=113.03 Aligned_cols=168 Identities=13% Similarity=0.161 Sum_probs=117.3
Q ss_pred ccceeecCCceeEEecCcEEEEEEEcCCCCe-eEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCceE
Q psy17146 27 EQKFAMEPQDQTAVVGSRVTLPCRVIDKTGV-LQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDARY 105 (1011)
Q Consensus 27 ~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~-v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G~Y 105 (1011)
+..+.+.|++..|..|+++.|+|++..+.+. +.|...-. +..+. ...+-..|.|.+|+ |+|.|
T Consensus 2 ~f~v~v~P~~~~V~~G~S~~l~Cs~~c~~p~~~glet~l~------------~~~~~--~g~~w~~l~l~~vs--~~g~~ 65 (192)
T 1zxq_A 2 VFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLN------------KILLD--EQAQWKHYLVSNIS--HDTVL 65 (192)
T ss_dssp CCCEEEESSEEEECTTEEEEEEEEESCSSCSEEEEECSSE------------EEEEE--EETTEEEEEEEEEC--SCEEE
T ss_pred CcEEEEeCCCcEEeCCCcEEEEEECCCCCccccccccccC------------ceEEc--CCCCeEEEEEeccc--cCCee
Confidence 3568889999999999999999999877664 45543210 11111 12234469999999 78999
Q ss_pred EEEEEeCCCCCcceeeeEEEEEEEcCCCCCeeecCCeeeecCCCcEEEEEEccCCCCCcE--EEEEeCCceeeeceeEEE
Q psy17146 106 QCQVSTGILGEPAIRSRFATLTVLVPPDPPRIVQGDTLYTTEDREIELECISANGKPPAE--ITWIDGTGTVMSNVRVTE 183 (1011)
Q Consensus 106 ~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~~i~~~~~~~v~eg~~v~L~C~~~~g~P~~~--i~W~k~~~~l~~~~~~~~ 183 (1011)
.|.+.... ......+.|+|+..|+.+.+...+ ..+.+|+.++|+|.+.++.|... +.|+|+++++... .+.
T Consensus 66 ~C~~~c~~----~~~~~~~~itVy~~P~~v~i~~~p-~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~-~f~- 138 (192)
T 1zxq_A 66 QCHFTCSG----KQESMNSNVSVYQPPRQVILTLQP-TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYE-TFG- 138 (192)
T ss_dssp EEEEEETT----EEEEEEEEEEECBCCCCCEEEEES-SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEE-ECC-
T ss_pred EEEEECCC----cceEEEEEEEEEeCCCCceEccCC-ccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeec-ccc-
Confidence 99998742 345688999999999988887432 24578999999999888999765 7999988887442 221
Q ss_pred eeecCCceEEEEEEEEEeeccCcCCcEEEEEEEeCC
Q psy17146 184 EASVDGRRTTVKSTLVLTPKKEHHNTTFTCQAQNTA 219 (1011)
Q Consensus 184 ~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~ 219 (1011)
+......... .++.+...+.+|.-.|+|+|.-..
T Consensus 139 ~~~~~~~~~t--v~~~~~~~r~D~g~~~sC~A~L~L 172 (192)
T 1zxq_A 139 KAAPAPQEAT--ATFNSTADREDGHRNFSCLAVLDL 172 (192)
T ss_dssp SSTTCTTCEE--EEEEEECCGGGGGCEEEEEEEEEC
T ss_pred cccCcCcceE--EEEEEecchhhCCceEEEEEEecC
Confidence 1111222222 355565555555559999999765
No 461
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1e-11 Score=110.36 Aligned_cols=94 Identities=14% Similarity=0.182 Sum_probs=75.5
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcCCC--CeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKT--GVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~--~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
...++.|...++++.+.+|++++|.|.+.+.. +.+.|+|++..+.. .+|+.+..++ ..++|+|.+++.+|
T Consensus 5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~------~~r~~~~~~~--~~~~L~I~~v~~~D 76 (104)
T 2eny_A 5 SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGS------SSRFQATRQG--RKYILVVREAAPSD 76 (104)
T ss_dssp CCCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSB------CSSCEEEEET--TEEEEEECSCCTTT
T ss_pred ccCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCC------CCCEEEEEcC--CEEEEEECCCCHHH
Confidence 34567899999999999999999999998743 36999999977642 3577766443 46789999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEEcCCC
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~ 133 (1011)
+|.|+|.+.+ .+..+.|+|..+|.
T Consensus 77 ~G~Y~C~a~~--------~~~~a~L~V~~~p~ 100 (104)
T 2eny_A 77 AGEVVFSVRG--------LTSKASLIVRERSG 100 (104)
T ss_dssp CSCEEEEETT--------EEEEECEEEECCCS
T ss_pred CEEEEEEECC--------eeEEEEEEEeCCCc
Confidence 9999999854 35678999998764
No 462
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.28 E-value=1e-11 Score=109.76 Aligned_cols=88 Identities=22% Similarity=0.329 Sum_probs=75.0
Q ss_pred EecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec--------CC--CcEEEeecCCCCCEEEEEEEE
Q psy17146 542 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG--------NS--PNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 542 ~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~--------~~--~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
..+|.|...|.++.+.+|+.++|.|.+.|.|.|.+.|+|++..+... .+ ..|.|.++..+|+|.|+|.|.
T Consensus 3 ~~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 82 (100)
T 2kdg_A 3 MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAK 82 (100)
T ss_dssp CEEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEE
Confidence 35788988999999999999999999999999999999998543222 22 389999999999999999999
Q ss_pred ecCCCceeeEEEEEEcCCC
Q psy17146 612 VMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~~~P 630 (1011)
| ..|..+..+.|.|..++
T Consensus 83 n-~~g~~~~~~~l~V~~~e 100 (100)
T 2kdg_A 83 N-RAGEATFTVQLDVLAKE 100 (100)
T ss_dssp E-TTEEEEEEEEEEEECCC
T ss_pred c-CCCeEEEEEEEEEEecC
Confidence 9 67788889999887643
No 463
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.27 E-value=1.2e-11 Score=107.62 Aligned_cols=83 Identities=20% Similarity=0.290 Sum_probs=71.4
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecC--Ccee-------ecCCCcEEEeecCCCCCEEEEEEEEecC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHED--SDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMG 614 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~--~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 614 (1011)
+|.|...+.++.+.+|+.+.|.|.+.|.|.|.+.|+|++ ..+. ......|.|.++..+|+|.|+|.|.| .
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N-~ 80 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN-E 80 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE-T
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEc-C
Confidence 688888888999999999999999999999999999999 4431 12336799999999999999999999 6
Q ss_pred CCceeeEEEEEEc
Q psy17146 615 FPEVGAEATVYLK 627 (1011)
Q Consensus 615 ~~~~s~~~~l~V~ 627 (1011)
.|..+..+.|.|+
T Consensus 81 ~G~~~~~~~l~V~ 93 (93)
T 1wit_A 81 LGEDEAIFEVIVQ 93 (93)
T ss_dssp TEEEEEEEEEEEC
T ss_pred CCeEEEEEEEEEC
Confidence 7788888888773
No 464
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=1.5e-11 Score=109.20 Aligned_cols=97 Identities=23% Similarity=0.313 Sum_probs=79.6
Q ss_pred ceeeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 23 AQYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 23 ~~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
....+|.|...+.++.+.+|++++|.|.+.++.+.+.|+|++..+.. ..|+.+..++ ...+|.|.+++.+|+
T Consensus 4 ~~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~~~~v~W~k~g~~~~~------~~~~~~~~~~--~~~~L~I~~v~~~D~ 75 (103)
T 2edf_A 4 GSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRK------SQKYDVVCEG--TMAMLVIRGASLKDA 75 (103)
T ss_dssp SCCCCCCEEECCCCEEECTTSCEEECCEESSSSCCCCEEESSCBCCC------SSSEEEEEET--TEEEEEESSCCTTTC
T ss_pred CCCCCcEEEecCCccEEcCCCCEEEEEEEeCCCCcEEEEECCEEccC------CCCEEEEECC--CEEEEEECCCCcccC
Confidence 44568899999999999999999999999988789999999976632 3466666443 366899999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCC
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~ 135 (1011)
|.|+|.+.| .+..+.|+|..+|.++
T Consensus 76 G~Y~C~a~n--------~~~~~~l~V~~~p~~~ 100 (103)
T 2edf_A 76 GEYTCEVEA--------SKSTASLHVEEKASGP 100 (103)
T ss_dssp SEEEEECSS--------CEEEEEEEECCCSSSS
T ss_pred EEEEEEEcc--------CCcEEEEEEeCCCCCC
Confidence 999999987 2566889998877654
No 465
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=6.2e-12 Score=114.99 Aligned_cols=101 Identities=22% Similarity=0.227 Sum_probs=83.1
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee-------ecCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV-------VGNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~-------~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
.+|.|...+.++.+.+|+.++|.|.+.|.|.+.+.|+|++..+. ...+++|.|.++..+|+|.|+|.|.| ..
T Consensus 7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n-~~ 85 (118)
T 2eo9_A 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIAST-PS 85 (118)
T ss_dssp CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEEC-SS
T ss_pred CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEc-CC
Confidence 47889889999999999999999999999999999999986543 24457899999999999999999999 57
Q ss_pred CceeeEEEEEEcCCCeee---cCCceeeecCC
Q psy17146 616 PEVGAEATVYLKGRPTII---SHRTQFGIPGD 644 (1011)
Q Consensus 616 ~~~s~~~~l~V~~~P~i~---~~~~~~v~~G~ 644 (1011)
+..+..+.|.|.++|.+. .+.+..+.+|.
T Consensus 86 g~~~~~~~l~V~~~~~p~~~~~~~~~~~~~G~ 117 (118)
T 2eo9_A 86 GEATWSAYIEVQEFGVPVQPPRPTDPNLIPSA 117 (118)
T ss_dssp CEEEEECCEEEECCSCCCCCCCCCCCCCCCCC
T ss_pred CcEEEEEEEEEEeCCCCccCCCCCCCccCCCC
Confidence 778888899998876543 23444455553
No 466
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.8e-11 Score=109.80 Aligned_cols=98 Identities=20% Similarity=0.284 Sum_probs=73.6
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcC----CCCeeEEeeCCe-ecCCcccCCCCcceEEeec----CCCceeEEEEee
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVID----KTGVLQWTKDDF-ALGPHRNLSGFDRYAMIGS----DEEGDYSLEIYP 96 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~----~~~~v~W~k~~~-~l~~~~~~~~~~r~~i~~~----~~~~~~~L~I~~ 96 (1011)
..+.|..+|+++.|.+|++++|.|.+.+ +.|.|.|||+.. .+... ...++.+... .....++|+|.+
T Consensus 11 ~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~I~~ 86 (118)
T 2edn_A 11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSK----SGARFSFKESHNSASNVYTVELHIGK 86 (118)
T ss_dssp CSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCS----TTSSCEEEEEECSSSCEEEEEEEESS
T ss_pred CcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCC----CccEEEeccccccccccceEEEEEee
Confidence 3466889999999999999999999986 477999999752 22110 1234444321 112357899999
Q ss_pred cccCCCceEEEEEEeCCCCCcceeeeEEEEEEEcC
Q psy17146 97 VMLDDDARYQCQVSTGILGEPAIRSRFATLTVLVP 131 (1011)
Q Consensus 97 v~~~D~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~ 131 (1011)
|+.+|+|.|+|++.|.. +..+..+.|+|..+
T Consensus 87 v~~~D~G~Y~Cevsn~~----g~~s~~~~L~V~~~ 117 (118)
T 2edn_A 87 VVLGDRGYYRLEVKAKD----TCDSCGFNIDVEAP 117 (118)
T ss_dssp CCTTTCSCEEEEEECSS----CEEEEEECCEEECC
T ss_pred CChhhCEEEEEEEEEcC----CcEEEEEEEEEEcC
Confidence 99999999999999964 45788899999874
No 467
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.25 E-value=1.6e-11 Score=111.32 Aligned_cols=83 Identities=16% Similarity=0.327 Sum_probs=71.0
Q ss_pred ceeecCCceEEEcCCCcEEEEEEEecC---CCCeEEEEecC---------Cceeec---------CCCcEEEeecCCCCC
Q psy17146 545 PRFRARPYSVQVDRGAGVNLLCDVDGN---PAPEITWIHED---------SDKVVG---------NSPNLTLLMTSDDLA 603 (1011)
Q Consensus 545 P~~~~~p~~~~v~~G~~~~l~C~~~g~---p~p~v~W~k~~---------~~~~~~---------~~~~L~I~~v~~~d~ 603 (1011)
|.|...|.++.+.+|++++|.|.+.+. |.|.|+|+|++ .++... ...+|+|.++..+|+
T Consensus 8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da 87 (126)
T 2dav_A 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA 87 (126)
T ss_dssp CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence 668899999999999999999999875 89999999973 233221 137899999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcC
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKG 628 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~ 628 (1011)
|.|+|+|.| ..+..+..++|.|..
T Consensus 88 G~Y~Cevsn-~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 88 GNYRCEVTY-KDKFDSCSFDLEVHE 111 (126)
T ss_dssp EEEEEEEEC-SSCEEEECCEEEEEC
T ss_pred EEEEEEEEe-CCCcEEEEEEEEEEe
Confidence 999999999 578888999999988
No 468
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.25 E-value=1.2e-11 Score=106.26 Aligned_cols=86 Identities=17% Similarity=0.305 Sum_probs=66.7
Q ss_pred CCCeeecCC-ce--eeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCE
Q psy17146 628 GRPTIISHR-TQ--FGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFG 704 (1011)
Q Consensus 628 ~~P~i~~~~-~~--~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G 704 (1011)
.||.|..+. +. .+.+|+.++|.|.+.+ |.| .++|+|||++|. .+.++.+.. ++...+|.|.++..+|+|
T Consensus 3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~-~v~W~k~g~~i~--~~~~~~i~~----~~~~~~L~I~~v~~~D~G 74 (91)
T 2lvc_A 3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDA-PVRWYKDGQEVE--ESDFVVLEN----EGPHRRLVLPATQPSDGG 74 (91)
T ss_dssp CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTS-CCEEEETTSCCC--CCSSCEEEE----ETTEEEEEESSCCGGGCS
T ss_pred CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCc-EEEEEECCEEee--eeeeeeEEe----cCCeEEEEeCCCChhhcE
Confidence 467777553 33 3468999999999865 778 899999999998 456677665 345678999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEe
Q psy17146 705 VYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 705 ~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.|+|.|.|. +.++.|+|
T Consensus 75 ~Y~C~a~n~----~~~~~ltV 91 (91)
T 2lvc_A 75 EFQCVAGDE----CAYFTVTI 91 (91)
T ss_dssp EEEEECSSC----EEEEEEEC
T ss_pred EEEEEEcce----EEEEEEEC
Confidence 999998664 55666654
No 469
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.25 E-value=7e-12 Score=111.44 Aligned_cols=89 Identities=22% Similarity=0.322 Sum_probs=75.8
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec---------CCCcEEEeecCCCCCEEEEEEEE
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG---------NSPNLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~---------~~~~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
+..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+... ...+|.|.++..+|+|.|+|.|.
T Consensus 5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 84 (103)
T 3qp3_A 5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCT 84 (103)
T ss_dssp TCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred CCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEE
Confidence 446789999999999999999999999999999999999998544221 22479999999999999999999
Q ss_pred ecCCCceeeEEEEEEcCCC
Q psy17146 612 VMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~~~P 630 (1011)
| ..|..+..+.|.|...+
T Consensus 85 N-~~G~~~~~~~l~V~~~~ 102 (103)
T 3qp3_A 85 N-YKGEASDYATLDVTGGD 102 (103)
T ss_dssp E-TTEEEEEEEEEEEECC-
T ss_pred e-CCCcEEEEEEEEEECCC
Confidence 9 67888889999887653
No 470
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}
Probab=99.25 E-value=1.6e-11 Score=140.09 Aligned_cols=212 Identities=9% Similarity=0.075 Sum_probs=129.7
Q ss_pred EEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee----ecCCCcEEEeecCCCCCEEEEEEEEecCC
Q psy17146 540 DVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV----VGNSPNLTLLMTSDDLAGRYYCKASVMGF 615 (1011)
Q Consensus 540 ~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~----~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~ 615 (1011)
.+..+..+...|++..+.+|++++|.|.+. .+.+.|+++|..+. ....+.|+|.++...|+|.|.|.+.+ .
T Consensus 199 ~~~~~t~i~v~P~~~~v~~Gs~vtl~C~a~---~~~I~W~~ng~~i~~~ri~~~~~~L~I~nl~~sd~g~y~~~C~~--~ 273 (488)
T 2q7n_A 199 SWIRNTETNVFPQDKVVLAGSNMTICCMSP---TKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFIT--D 273 (488)
T ss_dssp CCCCCSSCCEECTTCEEESSCCCEEEECCS---SCEEEEEETTEECCCEECSSSCEEEECCSCCCCCSSCEEEEEEE--S
T ss_pred CCcCCCceEECCCCCEEcCCCCEEEEEECC---CCEEEEEECCEECchhhccceEEEEEEeCCCcccCCcEEEEEEc--C
Confidence 334556677788888899999999999998 46999999985432 23346899999999999999887774 2
Q ss_pred CceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeE-ecccCCCCeEEecC-----------
Q psy17146 616 PEVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEE-IGVGSSDDYSVLED----------- 683 (1011)
Q Consensus 616 ~~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~-l~~~~~~~~~~~~~----------- 683 (1011)
.....+.|.|..+|... . .|.|........ .++|...... +.......|.+...
T Consensus 274 -~~i~~~~l~v~~pP~~P--~----------nl~C~~~~~~sv-tcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~ 339 (488)
T 2q7n_A 274 -DDVYGTVVFAGYPPDVP--Q----------KLSCETHDLKEI-ICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRI 339 (488)
T ss_dssp -SCEEEEEEEEECCCCCC--C----------SCEEEBSSSSEE-EEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECS
T ss_pred -CeEEEEEEEeeCCCCCC--c----------ccEEEEcCCCEE-EEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCccc
Confidence 22347788887777532 1 233333222111 3334331110 00000011111100
Q ss_pred CcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCCCC
Q psy17146 684 PLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKKPP 763 (1011)
Q Consensus 684 ~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 763 (1011)
....+....+.+........+.++|.|.|..|.....+.+.+.+ ..++.|
T Consensus 340 ~~~~~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~S~~~~~~~~------------------------------~v~P~P 389 (488)
T 2q7n_A 340 EGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTE------------------------------RVAPHD 389 (488)
T ss_dssp SCCCSSCEEEEEECCSSCCCCEEEEEEEETTEEEEEEEECCGGG------------------------------TBCCCC
T ss_pred cccCCceEEEEEcCCCCccEEEEEEEEEeCCCCccceEEEEecC------------------------------CCCCCC
Confidence 00001223455544433467789999999999854322222111 124448
Q ss_pred CCCCcccccccccccccc-cCCCCCCCCcCcceeeecC
Q psy17146 764 PGNGIEHHVTADGEKNQC-KESDNSSNISDIKLEFRTG 800 (1011)
Q Consensus 764 p~~~~~~~~~~~s~~~~W-~~~d~~s~I~~Y~ve~~~~ 800 (1011)
|.++.+..++..++.++| ++...+..+..|.|+|+..
T Consensus 390 P~nl~v~~~s~~sl~LsW~pP~~~~g~~l~YeV~Yr~~ 427 (488)
T 2q7n_A 390 PTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKA 427 (488)
T ss_dssp CEEEEEEECSTTCEEEEEEEEEECSSSEEEEEEEEBCT
T ss_pred CeEEEEEecCCCEEEEEEeCCCCCCCcceEEEEEEEEC
Confidence 999999888899999999 4444456889999999864
No 471
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.25 E-value=2e-11 Score=107.52 Aligned_cols=85 Identities=20% Similarity=0.245 Sum_probs=73.3
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee----------cCCCcEEEeecCCCCCEEEEEEEEe
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV----------GNSPNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~----------~~~~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
.+|.|...+.+..+.+|+.++|.|.+.|.|.|.+.|+|++..+.. ....+|.|.++..+|+|.|+|.|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 83 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN 83 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence 478888899999999999999999999999999999999854321 2234799999999999999999999
Q ss_pred cCCCceeeEEEEEEcC
Q psy17146 613 MGFPEVGAEATVYLKG 628 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V~~ 628 (1011)
..|.....+.|.|..
T Consensus 84 -~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 84 -IAGETSSHAFLLVQA 98 (99)
T ss_dssp -TTEEEEEEEEEEEEC
T ss_pred -CCCcEEEEEEEEEec
Confidence 678888888888864
No 472
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=6.6e-11 Score=105.41 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=75.2
Q ss_pred eccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCccc----CCCCcceEEeecCCCceeEEEEeecccCC
Q psy17146 26 REQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRN----LSGFDRYAMIGSDEEGDYSLEIYPVMLDD 101 (1011)
Q Consensus 26 ~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~----~~~~~r~~i~~~~~~~~~~L~I~~v~~~D 101 (1011)
.++.|...++++.+.+|++++|.|.+.+ .+.+.|+|||.+|..... .....|+.+..+ ...++|+|.+++.+|
T Consensus 7 p~~~~~~~l~d~~v~eG~~a~f~C~vs~-~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~--g~~~~L~I~~v~~~D 83 (112)
T 2e6q_A 7 GTARLVAGLEDVQVYDGEDAVFSLDLST-IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQK--GLQHRLILHAVKHQD 83 (112)
T ss_dssp SCCCEEECCCCEEEETTCEEEEEEEESS-CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCB--TTEEEEEEESCCSTT
T ss_pred CCcEEecCCCCeEEcCCCcEEEEEEECC-CCeEEEEECCEECccCcccccccccccEEEEEeC--CcEEEEEECCCCHHH
Confidence 3578999999999999999999999998 889999999988754320 001117777543 346789999999999
Q ss_pred CceEEEEEEeCCCCCcceeeeEEEEEEEcCCC
Q psy17146 102 DARYQCQVSTGILGEPAIRSRFATLTVLVPPD 133 (1011)
Q Consensus 102 ~G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~ 133 (1011)
+|.|+|..-+. ....+.|+|..+|.
T Consensus 84 ~G~Y~~~~~~~-------~~ssA~L~V~~~p~ 108 (112)
T 2e6q_A 84 SGALVGFSCPG-------VQDSAALTIQESSG 108 (112)
T ss_dssp CSEEEEEEETT-------EEEEEEEEEECSSC
T ss_pred CccEEEEEECC-------eeEEEEEEEeCCCc
Confidence 99997744332 24578999998764
No 473
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.24 E-value=2.2e-11 Score=107.49 Aligned_cols=91 Identities=25% Similarity=0.373 Sum_probs=72.3
Q ss_pred CCCeeecC-----CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCC-CCeEEecCCcCccceeEEEEcCCCCC
Q psy17146 628 GRPTIISH-----RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSS-DDYSVLEDPLKEGIKSTLIIRESRHD 701 (1011)
Q Consensus 628 ~~P~i~~~-----~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~~~~~ 701 (1011)
.+|.+... ....+.+|+.++|.|.+.|.|.| .+.|+|+|..+..... ..+.... ..+.|.|.++..+
T Consensus 3 ~~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~------~~~~L~i~~v~~~ 75 (100)
T 3caf_A 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRN------QHWSLIMESVVPS 75 (100)
T ss_dssp EEEEESCTTTTSCCEEEECTTCCEEEECCEEEESCC-EEEEEETTEECCGGGSTTCCEEEG------GGTEEEECSCCGG
T ss_pred CCCEeEcCccccccEEEecCCCEEEEEEEccccCCC-EEEEEECCEEcccccccccEEEec------CeEEEEEccCCcC
Confidence 35666522 34568899999999999999999 8999999999875322 1223322 2368999999999
Q ss_pred CCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 702 HFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 702 d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
|+|.|+|.|.|..|..+..+.|.|
T Consensus 76 D~G~Y~C~a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 76 DKGNYTCVVENEYGSINHTYHLDV 99 (100)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEEEEeCCCEEEEEEEEEE
Confidence 999999999999999999988876
No 474
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.23 E-value=4.5e-11 Score=126.89 Aligned_cols=171 Identities=18% Similarity=0.346 Sum_probs=109.3
Q ss_pred ceEEEcCCCcEEEEEEEec--CCCCeEEEEecCCc---e----------------------ee-----cCCCcEEEeecC
Q psy17146 552 YSVQVDRGAGVNLLCDVDG--NPAPEITWIHEDSD---K----------------------VV-----GNSPNLTLLMTS 599 (1011)
Q Consensus 552 ~~~~v~~G~~~~l~C~~~g--~p~p~v~W~k~~~~---~----------------------~~-----~~~~~L~I~~v~ 599 (1011)
..+.+.+|++++|.|.+.+ .....+.|+|.... . .. ....+|+|.+++
T Consensus 31 ~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 110 (267)
T 3u1s_H 31 GAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLT 110 (267)
T ss_dssp CCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCC
T ss_pred CCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence 3567999999999999975 34568999985311 0 00 012349999999
Q ss_pred CCCCEEEEEEEEe-------cC--------------CC---ceeeEEEEEEc----CCCeee-cCCceeeecCCcEEEEE
Q psy17146 600 DDLAGRYYCKASV-------MG--------------FP---EVGAEATVYLK----GRPTII-SHRTQFGIPGDTARVEC 650 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n-------~~--------------~~---~~s~~~~l~V~----~~P~i~-~~~~~~v~~G~~v~L~C 650 (1011)
.+|+|.|.|.+.+ .+ .. .....+.|.|. .+|.+. ..+...+..|+.++|.|
T Consensus 111 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~C 190 (267)
T 3u1s_H 111 ADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC 190 (267)
T ss_dssp GGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEEEE
T ss_pred hhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEEEE
Confidence 9999999999972 01 00 11223456664 356665 23333456899999999
Q ss_pred EEEec-CCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEe
Q psy17146 651 SAFSI-PPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKP 725 (1011)
Q Consensus 651 ~~~g~-p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 725 (1011)
.+.+. |.+..++| +|..+....................+.|.|.....+| |.|+|.|.|..+.......+.+
T Consensus 191 ~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~ 263 (267)
T 3u1s_H 191 LVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 263 (267)
T ss_dssp EEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred EEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEccc
Confidence 99985 54558999 6655432100000001100001124679999988888 9999999999887766666654
No 475
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Probab=99.23 E-value=1.5e-11 Score=132.56 Aligned_cols=221 Identities=14% Similarity=0.112 Sum_probs=133.5
Q ss_pred EEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEEEEEcCCC----
Q psy17146 555 QVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEATVYLKGRP---- 630 (1011)
Q Consensus 555 ~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~P---- 630 (1011)
.+..|++++|.|.+...+ .|.|++++.......+++|+|.++...|+|.|+|.| + +.....+.|.|..++
T Consensus 17 ~~~~G~~v~l~C~~~~~~--~i~W~~~~~~~~~~~~~~L~i~~~~~~d~G~YtC~~-~---~~~~~~~~l~v~~~~~~~~ 90 (306)
T 3d85_D 17 PDAPGEMVVLTCDTPEED--GITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHK-G---GEVLSHSLLLLHKKEDGIW 90 (306)
T ss_dssp SSCCCEEEEEECSSSCCS--SCEEEETTCCCCCEESSEEEEEECSGGGCEEEEEEE-T---TEEEEEEEEEEEEEETTEE
T ss_pred cCccCCcEEEECCCCCCC--cCEEEECCccccCCCCCEEEEEecCcCCCceEEEee-C---CcccceEEEEEEeccCCcc
Confidence 355899999999987333 899999998665567789999999999999999999 3 455556666665421
Q ss_pred --eeecCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeE-ecccCCCCeEEecCCcC---------ccceeEEEEcCC
Q psy17146 631 --TIISHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEE-IGVGSSDDYSVLEDPLK---------EGIKSTLIIRES 698 (1011)
Q Consensus 631 --~i~~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~-l~~~~~~~~~~~~~~~~---------~~~~~~L~I~~~ 698 (1011)
.|..... -.. +...|.|.+...+.....+|..++.. +.. .|........ ......++|.+.
T Consensus 91 ~t~i~~~~~--~pp-~~~~lsC~~~~~~~~~~C~W~pg~~~~l~~----~~~~~r~~~~~~~~~C~~~~~~~~~c~v~~~ 163 (306)
T 3d85_D 91 STDILKDQK--EPK-NKTFLRCEAKNYSGRFTCWWLTTISTDLTF----SVKSSRGSSDPQGVTCGAATLSAERVRGDNK 163 (306)
T ss_dssp CCCSSCCCC------CCCCCEEEBSSSSSEEEEEEEESCCSSEEE----EEEEEECSSSCEEEEECCCEEEEEEEC--CE
T ss_pred eeeeecccC--CCC-CCCcceEEcCCcccCcEEEecCCCCCceeE----EEEEEecCCCCcceECCCCCCCccceeecCc
Confidence 2221100 001 23468898877763337888876541 110 1111100000 000011112111
Q ss_pred -----------------CCCCCEEEEEEEEcCCCCeEEEEEEEecCCCCeEEEEEeeehHHHHHHHhhhheeeeeeccCC
Q psy17146 699 -----------------RHDHFGVYNCSVSNPYGSDSVEIMLKPQKSFPLLLILTGVIGCVVILVALTMVVILCQRKVKK 761 (1011)
Q Consensus 699 -----------------~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 761 (1011)
.......++|.|.|.+|..+....+.+.+ .-+|
T Consensus 164 ~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~~f~~~~------------------------------iVkP 213 (306)
T 3d85_D 164 EYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRD------------------------------IIKP 213 (306)
T ss_dssp EEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEEEECHHH------------------------------HBCC
T ss_pred cccceeeeeeccccccccccEEEEEEEEEEccCCccccceEEEehh------------------------------cEec
Confidence 11235667999999999777766554421 1255
Q ss_pred CCCCCCccccccc-ccccccc-cCCCCCCCC----cCcceeeecCcc----------------cccccccc---c---CC
Q psy17146 762 PPPGNGIEHHVTA-DGEKNQC-KESDNSSNI----SDIKLEFRTGSS----------------VSNVHLDY---A---GH 813 (1011)
Q Consensus 762 ~~p~~~~~~~~~~-~s~~~~W-~~~d~~s~I----~~Y~ve~~~~~~----------------~p~~~Y~f---A---~G 813 (1011)
.||.++.++.+.. ..+.++| ++.+.+.|. ..|.|+||.... .++++|+| | .|
T Consensus 214 dPP~~l~~~~~~~~~~l~vsW~~P~~~~~p~~~~~L~Y~vryr~~~~~~~~~~~~~~~ts~~l~~~~~Y~vqVRa~~~~~ 293 (306)
T 3d85_D 214 DPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVICRKNASISVRAQDRYY 293 (306)
T ss_dssp CCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEESSSEEEECCCSSCEEEEEEEESSS
T ss_pred CCCceEEEEEecCCCcEEEEEcCCCCCcCCCceeeEEEEEEEEECCCCccEEEeeccccEEEEeCCCeEEEEEEeccCCC
Confidence 5999998887544 6889999 666666665 589999987553 35677777 3 46
Q ss_pred CCCCC
Q psy17146 814 DSETG 818 (1011)
Q Consensus 814 ~g~~s 818 (1011)
.|..|
T Consensus 294 ~G~WS 298 (306)
T 3d85_D 294 SSSWS 298 (306)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 56555
No 476
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.23 E-value=8.6e-11 Score=115.67 Aligned_cols=164 Identities=15% Similarity=0.112 Sum_probs=111.5
Q ss_pred eeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecC---CCcEEEeecCCCCCEEEEEEEEecCCCceeeEE
Q psy17146 546 RFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGN---SPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEA 622 (1011)
Q Consensus 546 ~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~---~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~ 622 (1011)
.+...|.+..+.+|+++.|+|.+....+..+.|...-....... ...+.|.+++ +|.+.|.|.+.. +.....+.+
T Consensus 4 ~v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~g~~~~~~~ls~vs-~d~~~~~C~~~c-~~~~~~~~v 81 (196)
T 3bn3_B 4 WADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIR-EPETQPVCFFRC-ARRTLQARG 81 (196)
T ss_dssp CEEEESSEEEEETTEEEEEEEEECCSSCSEEEEECSSEEEEEEEETTEEEEEEEEEC-SSEECCEEEEEE-TTEEEEEEC
T ss_pred EEEEcCCCcEEcCCCeEEEEEeCCCCCCCccEEEEccCCeeEccccCceEEEEEEEc-cCCCceEEEEEC-CCCceEEEE
Confidence 34556778889999999999999643333677764322222221 1248999998 888889999877 456788899
Q ss_pred EEEEcCCCeee--cCCceeeecCCcEEEEEEEEecCCC--CeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 623 TVYLKGRPTII--SHRTQFGIPGDTARVECSAFSIPPP--EKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 623 ~l~V~~~P~i~--~~~~~~v~~G~~v~L~C~~~g~p~p--~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
+|.|..+|... .+....+.+|+.++|+|.+.|..++ +.|+|+|+++.+...... ...........++++.-.
T Consensus 82 ~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~----~~~~~~~~~t~~~~~~~~ 157 (196)
T 3bn3_B 82 LIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFA----GEPPRARGAVLTATVLAR 157 (196)
T ss_dssp EEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECT----TSCTTCCCEEEEEEEECC
T ss_pred EEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccc----cccccccceeEEEEEeee
Confidence 99998877644 2233348999999999999986443 248999999998642210 000001123356666655
Q ss_pred CCCCCEEEEEEEEcCCC
Q psy17146 699 RHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~~G 715 (1011)
..+|...|+|.|.|.++
T Consensus 158 r~D~g~~~sC~A~l~l~ 174 (196)
T 3bn3_B 158 REDHGANFSCRAELDLR 174 (196)
T ss_dssp GGGTTCEEEEEEEEECG
T ss_pred eccCCCeEEEEEEccCC
Confidence 54444499999999988
No 477
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.1e-11 Score=109.33 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=71.5
Q ss_pred cCCceeeecCCcEEEEEEEEec---CCCCeEEEEECCe-EecccCCCCeEEecC--CcCccceeEEEEcCCCCCCCEEEE
Q psy17146 634 SHRTQFGIPGDTARVECSAFSI---PPPEKVTWSYRGE-EIGVGSSDDYSVLED--PLKEGIKSTLIIRESRHDHFGVYN 707 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~---p~p~~v~W~~~g~-~l~~~~~~~~~~~~~--~~~~~~~~~L~I~~~~~~d~G~Y~ 707 (1011)
.+.+..+.+|++++|.|.+.|. |.| .|+|||++. .+......++.+... ........+|+|.++..+|+|.|+
T Consensus 18 ~P~~v~V~eG~~v~L~C~v~g~~~~p~P-~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 96 (118)
T 2edn_A 18 KPDSVSVETGKDAVVVAKVNGKELPDKP-TIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYR 96 (118)
T ss_dssp CCCCCEEETTSCEECCEEEETTTSSSCC-CCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEE
T ss_pred CCCCeEEeCCCCEEEEEEEeccCCCCCC-cEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEE
Confidence 5677889999999999999986 678 999999752 222222345555321 111223589999999999999999
Q ss_pred EEEEcCCCCeEEEEEEEecC
Q psy17146 708 CSVSNPYGSDSVEIMLKPQK 727 (1011)
Q Consensus 708 C~a~N~~G~~~~~~~l~V~~ 727 (1011)
|+|.|..|.+++.+.|.|+.
T Consensus 97 Cevsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 97 LEVKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp EEEECSSCEEEEEECCEEEC
T ss_pred EEEEEcCCcEEEEEEEEEEc
Confidence 99999999999999999864
No 478
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.22 E-value=2.3e-11 Score=108.96 Aligned_cols=89 Identities=29% Similarity=0.369 Sum_probs=75.3
Q ss_pred EEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceee------cCCC---cEEEeecCCCCCEEEEEEEE
Q psy17146 541 VTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVV------GNSP---NLTLLMTSDDLAGRYYCKAS 611 (1011)
Q Consensus 541 V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~------~~~~---~L~I~~v~~~d~G~Y~C~a~ 611 (1011)
+..+|.|...+.++.+.+|+.++|.|.+.+.|.+.+.|+|++..+.. ..++ +|.|.++..+|+|.|+|.|.
T Consensus 10 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 89 (107)
T 3irg_B 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR 89 (107)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCCeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECCCCCcEEEEeCCCEEEEEEccCCHHhCEEEEEEEE
Confidence 34688999999999999999999999999999999999998854322 1223 79999999999999999999
Q ss_pred ecCCCceeeEEEEEEcCCC
Q psy17146 612 VMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 612 n~~~~~~s~~~~l~V~~~P 630 (1011)
| ..+..+..+.|.|.++|
T Consensus 90 n-~~g~~~~~~~l~V~~~P 107 (107)
T 3irg_B 90 N-AAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp E-TTEEEEEEEEEEEEC--
T ss_pred c-CCCcEEEEEEEEEEcCC
Confidence 9 67788899999998876
No 479
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.22 E-value=2.1e-11 Score=105.48 Aligned_cols=85 Identities=14% Similarity=0.264 Sum_probs=72.1
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEecCCCceeeEEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 623 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 623 (1011)
++.|...|....+.+|+.++|.|.+.|.|.|.+.|+|++..+.....+.|.|.++..+|+|.|+|.|.|..+...+..+.
T Consensus 3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~ 82 (91)
T 3bfo_A 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82 (91)
T ss_dssp CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEE
T ss_pred ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCCCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEE
Confidence 46777888889999999999999999999999999999877766677899999999999999999999943333456677
Q ss_pred EEEcC
Q psy17146 624 VYLKG 628 (1011)
Q Consensus 624 l~V~~ 628 (1011)
|.|.+
T Consensus 83 l~V~~ 87 (91)
T 3bfo_A 83 IIIDE 87 (91)
T ss_dssp EEEC-
T ss_pred EEEeh
Confidence 87754
No 480
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.22 E-value=1.5e-11 Score=118.43 Aligned_cols=100 Identities=22% Similarity=0.367 Sum_probs=80.3
Q ss_pred cccEEEEEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec----------CCCcEEEeecCCCCC
Q psy17146 534 EDSETLDVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG----------NSPNLTLLMTSDDLA 603 (1011)
Q Consensus 534 ~~~~~l~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~----------~~~~L~I~~v~~~d~ 603 (1011)
...+.+.+..+|.|...+.++.+.+|+.++|.|.+.|.|.|.+.|+|++..+... ....|.|.++..+|+
T Consensus 31 ~~~~~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 110 (154)
T 1fhg_A 31 EEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDD 110 (154)
T ss_dssp ---CCCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGC
T ss_pred eehhcccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcC
Confidence 3445566678999999999999999999999999999999999999998543211 124899999999999
Q ss_pred EEEEEEEEecCCCceeeEEEEEEcCCCeeec
Q psy17146 604 GRYYCKASVMGFPEVGAEATVYLKGRPTIIS 634 (1011)
Q Consensus 604 G~Y~C~a~n~~~~~~s~~~~l~V~~~P~i~~ 634 (1011)
|.|+|.|.| ..|..+..+.|.|..+|.+..
T Consensus 111 G~Y~C~a~N-~~G~~~~~~~l~V~~~p~~~~ 140 (154)
T 1fhg_A 111 AKYTCKAVN-SLGEATCTAELLVETMGKEGE 140 (154)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEEECC-----
T ss_pred EEEEEEEEE-CCCeEEEEEEEEEeCcCcCCC
Confidence 999999999 678889999999999988763
No 481
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.22 E-value=3.5e-11 Score=105.99 Aligned_cols=85 Identities=25% Similarity=0.420 Sum_probs=72.6
Q ss_pred ecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec-------CC---CcEEEeecCCCCCEEEEEEEEe
Q psy17146 543 YGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG-------NS---PNLTLLMTSDDLAGRYYCKASV 612 (1011)
Q Consensus 543 ~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~-------~~---~~L~I~~v~~~d~G~Y~C~a~n 612 (1011)
.+|.|...|.+..+.+|+.++|.|.+.|.|.|.+.|+|++..+... .. .+|.|.++..+|+|.|+|.|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 83 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN 83 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence 5788888999999999999999999999999999999998543221 11 2699999999999999999999
Q ss_pred cCCCceeeEEEEEEcC
Q psy17146 613 MGFPEVGAEATVYLKG 628 (1011)
Q Consensus 613 ~~~~~~s~~~~l~V~~ 628 (1011)
..+..+..+.|.|.+
T Consensus 84 -~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 84 -EYGARQCEARLEVRG 98 (99)
T ss_dssp -TTEEEEEEEEEEEEC
T ss_pred -CCCceeEEEEEEEEC
Confidence 677888888888864
No 482
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.8e-11 Score=109.04 Aligned_cols=101 Identities=27% Similarity=0.330 Sum_probs=79.8
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCC
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDD 102 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~ 102 (1011)
...+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+... .+..+... ..+..+|+|.+++.+|+
T Consensus 6 ~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~------~~~~~~~~-~~~~~~L~i~~v~~~D~ 78 (110)
T 2dm3_A 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD------SAHKMLVR-ENGVHSLIIEPVTSRDA 78 (110)
T ss_dssp CCCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCC------SSEEEEEC-TTSCEEEEESSCCGGGC
T ss_pred CCCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCC------CceEEEEe-cCCeEEEEEeeCCcccC
Confidence 445799999999999999999999999987 66799999998766422 22222222 23467899999999999
Q ss_pred ceEEEEEEeCCCCCcceeeeEEEEEEEcCCCCC
Q psy17146 103 ARYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135 (1011)
Q Consensus 103 G~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~ 135 (1011)
|.|+|.+.|.. +..+..+.|.|..++.+|
T Consensus 79 G~Y~C~a~n~~----g~~~~~~~l~V~~~p~~P 107 (110)
T 2dm3_A 79 GIYTCIATNRA----GQNSFSLELVVAAKESGP 107 (110)
T ss_dssp SBBCEEEECSS----CEEEECCEEEEECCCCSS
T ss_pred EEEEEEEECCC----CEEEEEEEEEEeCCCCCC
Confidence 99999999863 346778899999887765
No 483
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=108.97 Aligned_cols=87 Identities=24% Similarity=0.393 Sum_probs=74.7
Q ss_pred EEEecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee------ecCCCcEEEeecCCCCCEEEEEEEEec
Q psy17146 540 DVTYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV------VGNSPNLTLLMTSDDLAGRYYCKASVM 613 (1011)
Q Consensus 540 ~V~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~------~~~~~~L~I~~v~~~d~G~Y~C~a~n~ 613 (1011)
.+..+|.|...+.+..+.+|+.++|.|.+.|.|.|.+.|+|++..+. ......|.|.++..+|+|.|+|.|.|
T Consensus 7 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N- 85 (99)
T 2yr3_A 7 GMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAEN- 85 (99)
T ss_dssp CCCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEEC-
T ss_pred CcccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEE-
Confidence 45678999999999999999999999999999999999999986543 23346899999999999999999999
Q ss_pred CCCceeeEEEEEEc
Q psy17146 614 GFPEVGAEATVYLK 627 (1011)
Q Consensus 614 ~~~~~s~~~~l~V~ 627 (1011)
..|..+..+.|.|+
T Consensus 86 ~~g~~~~~~~l~V~ 99 (99)
T 2yr3_A 86 ALGQVSCSAWVTVH 99 (99)
T ss_dssp SSCEEEEECCEEEC
T ss_pred CCCeEEEEEEEEEC
Confidence 57777777777763
No 484
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.21 E-value=1.2e-10 Score=119.92 Aligned_cols=159 Identities=18% Similarity=0.291 Sum_probs=100.5
Q ss_pred eecCCceEEEcCCCcEEEEEEEecCC--CCeEEEEecCC--c--ee----------------e-----cCCCcEEEeecC
Q psy17146 547 FRARPYSVQVDRGAGVNLLCDVDGNP--APEITWIHEDS--D--KV----------------V-----GNSPNLTLLMTS 599 (1011)
Q Consensus 547 ~~~~p~~~~v~~G~~~~l~C~~~g~p--~p~v~W~k~~~--~--~~----------------~-----~~~~~L~I~~v~ 599 (1011)
+...|..+.+.+|++++|.|.+.+.+ ...+.|+|... . .. . ....+|+|.+++
T Consensus 4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 83 (229)
T 1hxm_A 4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS 83 (229)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence 44567788999999999999998665 46899998631 1 11 0 112479999999
Q ss_pred CCCCEEEEEEEEecCC-----C--ceeeEEEEEEcCCCeeecCCceeeecCCcEEEEEEEEec-CCCCeEEEEECCeEec
Q psy17146 600 DDLAGRYYCKASVMGF-----P--EVGAEATVYLKGRPTIISHRTQFGIPGDTARVECSAFSI-PPPEKVTWSYRGEEIG 671 (1011)
Q Consensus 600 ~~d~G~Y~C~a~n~~~-----~--~~s~~~~l~V~~~P~i~~~~~~~v~~G~~v~L~C~~~g~-p~p~~v~W~~~g~~l~ 671 (1011)
.+|+|.|.|.+.+... . .......|.|........++...+.. ..++|.|.+.|. |.++.|+|+++ ..+.
T Consensus 84 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~~~ 161 (229)
T 1hxm_A 84 ERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVMK-NGTNVACLVKEFYPKDIRINLVSS-KKIT 161 (229)
T ss_dssp GGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEEE-ETTEEEEEEESCBSSCCEEEEECS-SEEE
T ss_pred HhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CEEe
Confidence 9999999999997311 1 12233567776422222122222222 234899999986 55558999999 7765
Q ss_pred ccCCCCeEEecCCcCccceeEEEEcCCC-CCCCEEEEEEEEcCCC
Q psy17146 672 VGSSDDYSVLEDPLKEGIKSTLIIRESR-HDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~d~G~Y~C~a~N~~G 715 (1011)
.. ........ ++ .+.+.... ..|.|.|+|.|.|..+
T Consensus 162 ~~-~~~~~~~~----dg---~y~~~~~~~~~~~~~ytC~V~h~~~ 198 (229)
T 1hxm_A 162 EF-DPAIVISP----SG---KYNAVKLGKYEDSNSVTCSVQHDNK 198 (229)
T ss_dssp EC-CCEEEECT----TS---SEEEEEEEEETTTTTCEEEEEETTE
T ss_pred cC-ccceEECC----CC---cEEEEECcccCCCCcEEEEEEeCCC
Confidence 32 11111111 22 33333333 3678899999999874
No 485
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=4e-11 Score=109.53 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=74.4
Q ss_pred EEecceeec---CCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCcee------e--cCCCcEEEeecCCCCCEEEEEE
Q psy17146 541 VTYGPRFRA---RPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKV------V--GNSPNLTLLMTSDDLAGRYYCK 609 (1011)
Q Consensus 541 V~~~P~~~~---~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~------~--~~~~~L~I~~v~~~d~G~Y~C~ 609 (1011)
+..+|.|.. .+..+.+.+|+.+.|.|.+.|.|.|.+.|+|++..+. . .....|.|.++..+|+|.|+|.
T Consensus 18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 97 (118)
T 2e7c_A 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELS 97 (118)
T ss_dssp CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEE
T ss_pred eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEE
Confidence 345788864 3578899999999999999999999999999985542 1 1134599999999999999999
Q ss_pred EEecCCCceeeEEEEEEcCCC
Q psy17146 610 ASVMGFPEVGAEATVYLKGRP 630 (1011)
Q Consensus 610 a~n~~~~~~s~~~~l~V~~~P 630 (1011)
|.| ..|..+..+.|.|.++|
T Consensus 98 a~N-~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 98 VQI-ENMKDTATIRIRVVEKA 117 (118)
T ss_dssp EEC-SSCEECCEEEEEEECCC
T ss_pred EEe-CCCeEEEEEEEEEEcCC
Confidence 999 67788999999998876
No 486
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.8e-11 Score=107.03 Aligned_cols=97 Identities=23% Similarity=0.287 Sum_probs=75.3
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
...+|.|...+.++.+.+|++++|.|.+.+..+.+.|+|++..+....... .|+.+..+ ....+|.|.+++.+|+|
T Consensus 5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~v~W~k~g~~i~~~~~~~--~~~~~~~~--~~~~~L~I~~~~~~D~G 80 (101)
T 2edk_A 5 SSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFK--ARYRFKKD--GKRHILIFSDVVQEDRG 80 (101)
T ss_dssp CCCCCCEEECCCCEEEESSCCCBCCEEESCSSCCCEEEESSCBCCCSCCSS--CCCEEEEC--SSEEEEECSSCCGGGCS
T ss_pred ccCCCEEEecCCceEEcCCCCEEEEEEEeCCCCEEEEEECCEECCCCCCcc--eeEEEEEC--CCEEEEEECCCChhhCE
Confidence 345788999999999999999999999998558999999998764332111 16666543 35668999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCC
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPP 132 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p 132 (1011)
.|+|.+.|. +..+.|+|..+|
T Consensus 81 ~Y~C~a~n~--------~~~~~l~V~~~P 101 (101)
T 2edk_A 81 RYQVITNGG--------QCEAELIVEEKQ 101 (101)
T ss_dssp BEEEECSSC--------EECCBEEEECCC
T ss_pred EEEEEEcCC--------cEEEEEEEeCCC
Confidence 999999762 344678887654
No 487
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.19 E-value=5.7e-11 Score=106.50 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=69.7
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCC---CeEEEEecCCc---------eeec---------CCCcEEEeecCCCC
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPA---PEITWIHEDSD---------KVVG---------NSPNLTLLMTSDDL 602 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~---p~v~W~k~~~~---------~~~~---------~~~~L~I~~v~~~d 602 (1011)
.|.|...|.++.+.+|++++|.|.+.|.|. |.|.|+|++.. .... ...+|+|.+++.+|
T Consensus 4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 83 (108)
T 3cx2_A 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83 (108)
T ss_dssp CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence 478888999999999999999999999998 99999997621 1110 13689999999999
Q ss_pred CEEEEEEEEecCCCceeeEEEEEEc
Q psy17146 603 AGRYYCKASVMGFPEVGAEATVYLK 627 (1011)
Q Consensus 603 ~G~Y~C~a~n~~~~~~s~~~~l~V~ 627 (1011)
+|.|+|.|.| ..|..+..+.|.|.
T Consensus 84 ~G~Y~C~a~N-~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 84 TGSYRCEVST-KDKFDCSNFNLTVH 107 (108)
T ss_dssp CEEEEEEEEC-SSCEEEEEEEEEEE
T ss_pred CEEEEEEEec-CCCceEEEEEEEEe
Confidence 9999999999 67888899998885
No 488
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.19 E-value=1.5e-10 Score=101.92 Aligned_cols=93 Identities=23% Similarity=0.284 Sum_probs=75.8
Q ss_pred eeccceeecCCceeEEecCcEEEEEEEcC-CCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 25 YREQKFAMEPQDQTAVVGSRVTLPCRVID-KTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 25 ~~~p~~~~~p~~~~v~~G~~v~L~C~v~~-~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
..+|.|...|.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. ..|+.+..+ .+.++|.|.+++.+|+|
T Consensus 4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~------~~~~~~~~~--~~~~~L~i~~~~~~d~G 75 (99)
T 3puc_A 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQ------GGKYKLSED--KGGFFLEIHKTDTSDSG 75 (99)
T ss_dssp CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCS------SSSEEEEEE--TTEEEEEECSCCGGGCE
T ss_pred CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcC------CCCEEEEEe--CCEEEEEECCCCcccCE
Confidence 35789999999999999999999999987 6779999999977632 356666543 35568999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEE
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVL 129 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~ 129 (1011)
.|+|.+.|.. +..+..+.|.|.
T Consensus 76 ~Y~C~a~n~~----g~~~~~~~l~V~ 97 (99)
T 3puc_A 76 LYTCTVKNSA----GSVSSSCKLTIK 97 (99)
T ss_dssp EEEEEEEETT----EEEEEEEEEEEE
T ss_pred EEEEEEEeCC----CcEeEEEEEEEE
Confidence 9999999863 445666777775
No 489
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.2e-10 Score=103.36 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=76.5
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
...+|.|...+.++.+.+|++++|.|.+..+.+.+.|+|++..+.. ..|+.+..+ ...++|+|.+++.+|+|
T Consensus 5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~p~~~v~W~k~~~~l~~------~~~~~~~~~--~~~~~L~I~~v~~~D~G 76 (103)
T 2dku_A 5 SSGANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGLLELRA------SGKHQPSQE--GLTLRLTISALEKADSD 76 (103)
T ss_dssp SCCCCCCSSCCCCEEEETTSEEEEEEECSSCCSCCEEEESSCBCCS------SSSEEEEEE--TTEEEEEEESCCTTTCS
T ss_pred CCCCCEeEecCCcEEEeCCCcEEEEEEeCCCCCeEEEEeCCEECCC------CCeEEEEeC--CCEEEEEECCCCcccCE
Confidence 3457899999999999999999999997667789999999976642 347776533 35668999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCCCCC
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPPDPP 135 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p~~~ 135 (1011)
.|+|.+. ..+..+.|+|...|.+|
T Consensus 77 ~Y~C~~g--------~~~~~~~l~V~~~p~~p 100 (103)
T 2dku_A 77 TYTCDIG--------QAQSRAQLLVQGRRSGP 100 (103)
T ss_dssp EEEEECS--------SCBCCEEEEEECSCCCC
T ss_pred EEEEEeC--------CceEEEEEEEeCccCCC
Confidence 9999822 23456889999887654
No 490
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.18 E-value=4.7e-11 Score=105.87 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=69.2
Q ss_pred EecceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeec----------CC----CcEEEeecCCCCCEEEE
Q psy17146 542 TYGPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVG----------NS----PNLTLLMTSDDLAGRYY 607 (1011)
Q Consensus 542 ~~~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~----------~~----~~L~I~~v~~~d~G~Y~ 607 (1011)
..+|.+..... ...|..+.|.|.+.|.|.|.++|+|+|..+... .. +.|.|.++..+|+|.|+
T Consensus 2 ~~pP~i~~~~~---~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 78 (103)
T 1wwb_X 2 HFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 78 (103)
T ss_dssp CCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred CCCCEEEeccC---ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEE
Confidence 45666543222 346888999999999999999999998544221 11 33999999999999999
Q ss_pred EEEEecCCCceeeEEEEEEcCCCee
Q psy17146 608 CKASVMGFPEVGAEATVYLKGRPTI 632 (1011)
Q Consensus 608 C~a~n~~~~~~s~~~~l~V~~~P~i 632 (1011)
|.|.| ..|..+..+.|.|..+|.+
T Consensus 79 C~A~N-~~G~~~~~~~l~V~~~P~~ 102 (103)
T 1wwb_X 79 LIAKN-EYGKDEKQISAHFMGWPGI 102 (103)
T ss_dssp EEEEC-SSCEEEEEEEECCSCCCCC
T ss_pred EEEEe-CCCcEeEEEEEEECCCCCC
Confidence 99999 7899999999999988864
No 491
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.18 E-value=1.4e-10 Score=102.23 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=73.9
Q ss_pred eeccceeecCCc-eeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 25 YREQKFAMEPQD-QTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 25 ~~~p~~~~~p~~-~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
..+|.|...+.+ +.+.+|++++|.|.+..+.+.+.|+|++..+.. ..|+.+..++ ...+|.|.+++.+|+|
T Consensus 5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~p~~~v~W~k~g~~i~~------~~~~~~~~~~--~~~~L~I~~~~~~D~G 76 (100)
T 2yuv_A 5 SSGAAFAKILDPAYQVDKGGRVRFVVELADPKLEVKWYKNGQEIRP------STKYIFEHKG--CQRILFINNCQMTDDS 76 (100)
T ss_dssp SSSCCEEECCCSCEEECTTEEEEEEEEESCTTSCEEEEESSCBCCC------BTTEEEEEET--TEEEEEEEEECTTTCC
T ss_pred CCCCeEEecCCCccEEcCCCcEEEEEEecCCCceEEEEECCEECCC------CCCEEEEecC--CEEEEEEcCCCcCcCE
Confidence 357899998887 688899999999999977789999999976643 3467765433 4568999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCC
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPP 132 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p 132 (1011)
.|+|.+.+ .+..+.|+|..+|
T Consensus 77 ~Y~C~ag~--------~~~~~~l~V~~~P 97 (100)
T 2yuv_A 77 EYYVTAGD--------EKCSTELFVRSGP 97 (100)
T ss_dssp EEEEEETT--------EEEEEEEEECCSC
T ss_pred EEEEEECC--------ceEEEEEEEecCC
Confidence 99999921 4566888888765
No 492
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=4.6e-11 Score=105.13 Aligned_cols=80 Identities=20% Similarity=0.390 Sum_probs=68.3
Q ss_pred CceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcCCC
Q psy17146 636 RTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNPYG 715 (1011)
Q Consensus 636 ~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~~G 715 (1011)
....+.+|+.++|.|.+.|.| | .+.|+|+|..+.. ..++.+. ...|.|.++..+|+|.|+|.|.|..|
T Consensus 11 ~~~~v~~G~~v~L~C~~~g~p-p-~i~W~k~g~~~~~--~~~~~~~--------~~~L~i~~v~~~D~G~Y~C~a~n~~g 78 (99)
T 2cr3_A 11 ESFLVHPGDLLQLRCRLRDDV-Q-SINWLRDGVQLAE--SNRTRIT--------GEEVEVQDSVPADSGLYACVTSSPSG 78 (99)
T ss_dssp EECCBCTTSCEEEECCCCSSC-C-EEEEEESSSBCCC--CSSEEEC--------SSEEEETTCCTTTCEEEEEEEEETTE
T ss_pred cCeEEeCCCcEEEEEEecCCC-C-eEEEEECCEECCC--CCcEEEE--------CCEEEEccCCHHHCEEEEEEEEeCCc
Confidence 445688999999999999987 7 9999999988863 3455553 25899999999999999999999999
Q ss_pred CeEEEEEEEecC
Q psy17146 716 SDSVEIMLKPQK 727 (1011)
Q Consensus 716 ~~~~~~~l~V~~ 727 (1011)
..+..+.|.|.+
T Consensus 79 ~~~~~~~l~V~~ 90 (99)
T 2cr3_A 79 SDTTYFSVNVSD 90 (99)
T ss_dssp EEEEEEEECBCS
T ss_pred eEEEEEEEEEec
Confidence 999999998854
No 493
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Probab=99.16 E-value=1.2e-10 Score=104.41 Aligned_cols=92 Identities=24% Similarity=0.390 Sum_probs=74.9
Q ss_pred eeeccceeecCCceeEEecCcEEEEEEEcCCCCeeEEeeCCeecCCcccCCCCcceEEeecCCCceeEEEEeecccCCCc
Q psy17146 24 QYREQKFAMEPQDQTAVVGSRVTLPCRVIDKTGVLQWTKDDFALGPHRNLSGFDRYAMIGSDEEGDYSLEIYPVMLDDDA 103 (1011)
Q Consensus 24 ~~~~p~~~~~p~~~~v~~G~~v~L~C~v~~~~~~v~W~k~~~~l~~~~~~~~~~r~~i~~~~~~~~~~L~I~~v~~~D~G 103 (1011)
...+|.|...+.++.+.+|++++|.|.+.+. +.+.|+|++..+. ...|+.+..++ ..++|.|.+++.+|+|
T Consensus 5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~-p~v~W~k~~~~~~------~~~~~~~~~~~--~~~~L~I~~v~~~D~G 75 (108)
T 2dm7_A 5 SSGPARFTQDLKTKEASEGATATLQCELSKV-APVEWKKGPETLR------DGGRYSLKQDG--TRCELQIHDLSVADAG 75 (108)
T ss_dssp SCCCCCBCSCCBCCEEETTSCEEEEEEBSSS-CCCEEESSSSBCC------SSSSCEEEEET--TEEEEEESSCCTTTCS
T ss_pred cCCCCeeeecCCcEEEeCCCcEEEEEEeCCC-CeeEEEECCEECC------CCCCEEEEecC--CEEEEEECCCCcccCE
Confidence 4467999999999999999999999999865 7899999987653 33577766543 4568999999999999
Q ss_pred eEEEEEEeCCCCCcceeeeEEEEEEEcCC
Q psy17146 104 RYQCQVSTGILGEPAIRSRFATLTVLVPP 132 (1011)
Q Consensus 104 ~Y~C~~~~~~~~~~~~~s~~~~l~V~~~p 132 (1011)
.|+|.+.+ .+..+.|+|..+|
T Consensus 76 ~Y~C~a~n--------~~~~~~l~V~~~p 96 (108)
T 2dm7_A 76 EYSCMCGQ--------ERTSATLTVRALP 96 (108)
T ss_dssp EEEEEETT--------EEEEEECEEECCC
T ss_pred EEEEEEcC--------CEEEEEEEEecCC
Confidence 99999944 3566888888755
No 494
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=99.16 E-value=9.9e-11 Score=102.13 Aligned_cols=82 Identities=16% Similarity=0.402 Sum_probs=69.3
Q ss_pred cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEEEEEcC
Q psy17146 634 SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNCSVSNP 713 (1011)
Q Consensus 634 ~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C~a~N~ 713 (1011)
.+....+.+|+.++|.|.+.+ .| .+.|+|+|..+. ...++.+.. ..|.|.++..+|+|.|+|.|.|.
T Consensus 7 ~p~~~~v~~G~~~~l~C~~~~--~p-~v~W~k~g~~~~--~~~~~~~~~--------~~L~i~~~~~~D~G~Y~C~a~n~ 73 (95)
T 4hwu_A 7 QPEAYVVAPGESLELQCMLKD--AA-VISWTKDGVHLG--PNNRTVLIG--------EYLQIKGATPRDSGLYACTAART 73 (95)
T ss_dssp -CEEEEECTTSCEEEECCCCT--TC-EEEEEETTEEEC--CCSSEEEET--------TEEEECSCCGGGCEEEEEEEECS
T ss_pred CCCcEEECCCCEEEEEEEeCC--CC-EEEEEECCEECC--CCceEEEeC--------CEEEECcCCcccCEEEEEEEccC
Confidence 345667899999999999987 46 899999999987 345555542 58999999999999999999999
Q ss_pred CCCeEEEEEEEecCC
Q psy17146 714 YGSDSVEIMLKPQKS 728 (1011)
Q Consensus 714 ~G~~~~~~~l~V~~~ 728 (1011)
.|..+..+.|.|.+.
T Consensus 74 ~g~~~~~~~l~V~~~ 88 (95)
T 4hwu_A 74 VDSETWIFMVNVTDA 88 (95)
T ss_dssp SCEEEEEEEEEECCC
T ss_pred CCcEEEEEEEEEeCC
Confidence 999999999999765
No 495
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.7e-11 Score=107.24 Aligned_cols=85 Identities=24% Similarity=0.401 Sum_probs=74.2
Q ss_pred cceeecCCceEEEcCCCcEEEEEEEecCCCCeEEEEecCCceeecCCCcEEEeecCCCCCEEEEEEEEec-CCCceeeEE
Q psy17146 544 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVM-GFPEVGAEA 622 (1011)
Q Consensus 544 ~P~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~-~~~~~s~~~ 622 (1011)
+|.|...|.+..+.+|+.++|.|.+.+.|.+.+.|+|++..+.......|.|.++..+|+|.|+|.|.|. +....+..+
T Consensus 10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~ 89 (96)
T 2ens_A 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89 (96)
T ss_dssp SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCCCSEEEEESCCTTTCEEEECEECCSSCCCEECCCE
T ss_pred CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEE
Confidence 5677788888889999999999999999999999999998887778899999999999999999999993 444566777
Q ss_pred EEEEcC
Q psy17146 623 TVYLKG 628 (1011)
Q Consensus 623 ~l~V~~ 628 (1011)
.|.|.+
T Consensus 90 ~v~V~~ 95 (96)
T 2ens_A 90 SISIIE 95 (96)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 777754
No 496
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.16 E-value=1e-10 Score=105.90 Aligned_cols=101 Identities=21% Similarity=0.298 Sum_probs=81.2
Q ss_pred CCceeeEEEEEEcCC-Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeE
Q psy17146 615 FPEVGAEATVYLKGR-PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKST 692 (1011)
Q Consensus 615 ~~~~s~~~~l~V~~~-P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 692 (1011)
.+..+..+.|.|..+ |.|. .+....+.+|++++|.|.+.+. | .+.|+|+|..+. ...++.+.. ++....
T Consensus 4 ~g~~~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p-~v~W~k~~~~l~--~~~~~~~~~----~~~~~~ 74 (113)
T 2edh_A 4 GSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--A-PVEWWKGHETLR--DGDRHSLRQ----DGARCE 74 (113)
T ss_dssp CCCCCCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--C-CCEEEESSSBCC--CSSSEEEEE----ETTEEE
T ss_pred CCCCcEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--C-cEEEEECCEECC--CCCcEEEEE----CCCEEE
Confidence 445666778888754 5776 4567789999999999999775 6 799999999887 456777765 334568
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 693 LIIRESRHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 693 L~I~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
|.|.++..+|+|.|+|.| |..+..+.|.|...
T Consensus 75 L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~~~ 106 (113)
T 2edh_A 75 LQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAM 106 (113)
T ss_dssp EEECSCCSTTCEEEEEEE----TTEEEEEEEEECCC
T ss_pred EEECCCChhhCEEEEEEe----CCCCEEEEEEEeCC
Confidence 999999999999999999 78888899988653
No 497
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.16 E-value=5.2e-11 Score=102.98 Aligned_cols=85 Identities=14% Similarity=0.264 Sum_probs=72.3
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEEcCCcceeeEEE
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASVMGFPEVGAEAT 469 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 469 (1011)
++.+...|....+.+|+.+.|.|.+.|+|.+.+.|+|++..........|.|.+++.+|+|.|+|.|.|..+...+..+.
T Consensus 3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~ 82 (91)
T 3bfo_A 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82 (91)
T ss_dssp CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEE
T ss_pred ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCCCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEE
Confidence 45677788888999999999999999999999999999876655566789999999999999999999977665667777
Q ss_pred EEEcC
Q psy17146 470 VYLKG 474 (1011)
Q Consensus 470 v~v~~ 474 (1011)
|.|.+
T Consensus 83 l~V~~ 87 (91)
T 3bfo_A 83 IIIDE 87 (91)
T ss_dssp EEEC-
T ss_pred EEEeh
Confidence 77743
No 498
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.1e-11 Score=109.66 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=76.9
Q ss_pred EEEEEEcCCC-eee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCC
Q psy17146 621 EATVYLKGRP-TII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRES 698 (1011)
Q Consensus 621 ~~~l~V~~~P-~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~ 698 (1011)
.+.|.|..+| .|. .+.+..+.+|++++|.|.+.|.|.| .+.|+|||..+.. ..++.+... .+....|.|.++
T Consensus 4 ~a~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~l~~--~~~~~~~~~---~~~~~~L~I~~v 77 (115)
T 2cr6_A 4 GSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYE-PVHWFLDKTPLHA--NELNEIDAQ---PGGYHVLTLRQL 77 (115)
T ss_dssp CCCCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCC-SCEEEESSCEECC--SSSCCBCCB---TTTBCCBEECSC
T ss_pred cEEEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCC-ccEEEECCEECCC--CCcEEEEEc---CCCEEEEEEcCC
Confidence 4456677766 555 4567889999999999999999999 8999999999874 345554321 244578999999
Q ss_pred CCCCCEEEEEEEEcCCCCeEEEEEEEecCC
Q psy17146 699 RHDHFGVYNCSVSNPYGSDSVEIMLKPQKS 728 (1011)
Q Consensus 699 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 728 (1011)
..+|+|.|+|. +|.....+.|.|.+.
T Consensus 78 ~~~D~G~Y~C~----~g~~~~~~~L~V~~~ 103 (115)
T 2cr6_A 78 ALKDSGTIYFE----AGDQRASAALRVTEK 103 (115)
T ss_dssp CTTTCEEEEEE----ETTEECCEEEEEECC
T ss_pred ChhhCEEEEEE----ECCeeEEEEEEEECC
Confidence 99999999999 477777788888643
No 499
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.15 E-value=1.1e-10 Score=103.61 Aligned_cols=87 Identities=22% Similarity=0.326 Sum_probs=68.8
Q ss_pred Ceee-cCCceeeecCCcEEEEEEEEecCCCCeEEEEECCeEecccCCCCeEEecCCcCccceeEEEEcCCCCCCCEEEEE
Q psy17146 630 PTII-SHRTQFGIPGDTARVECSAFSIPPPEKVTWSYRGEEIGVGSSDDYSVLEDPLKEGIKSTLIIRESRHDHFGVYNC 708 (1011)
Q Consensus 630 P~i~-~~~~~~v~~G~~v~L~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~d~G~Y~C 708 (1011)
+.|. .+.+..+.+|++++|.|.+.+ |.+ .+.|+|+|..+......+|.+.. ++....|.|.++..+|+|.|+|
T Consensus 8 ~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~-~v~W~k~g~~l~~~~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C 81 (103)
T 1x44_A 8 IMVTKQLEDTTAYCGERVELECEVSE-DDA-NVKWFKNGEEIIPGPKSRYRIRV----EGKKHILIIEGATKADAAEYSV 81 (103)
T ss_dssp CCCSBCCCCEEEETTEEEEEEEECSS-SSC-CCEEEETTEECCCSTTCSEEEEE----ETTEEEEEEEEECTTTCSEEEE
T ss_pred ceeeccCCCEEEECCCCEEEEEEecC-CCC-eEEEEECCEECCCCCceEEEEEE----cCCEEEEEECCCCcccCEEEEE
Confidence 3354 456778999999999999987 667 89999999998754333666664 3446799999999999999999
Q ss_pred EEEcCCCCeEEEEEEEec
Q psy17146 709 SVSNPYGSDSVEIMLKPQ 726 (1011)
Q Consensus 709 ~a~N~~G~~~~~~~l~V~ 726 (1011)
.|.| .+..+.|.|.
T Consensus 82 ~a~n----~~~~~~l~V~ 95 (103)
T 1x44_A 82 MTTG----GQSSAKLSVD 95 (103)
T ss_dssp EETT----EEEEEEEEEE
T ss_pred EECC----CcEEEEEEEe
Confidence 9998 4666677764
No 500
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=4.3e-11 Score=104.70 Aligned_cols=85 Identities=24% Similarity=0.401 Sum_probs=73.4
Q ss_pred cceEeeCCCceEecCCCcEEEEeecCCCCCCceEEEeCCCceeeccCCcEEEEeeccCCCeEEEEEEEE-cCCcceeeEE
Q psy17146 390 GPRFRARPYSVQVDRGAGVNLLCDVDGNPAPEITWIHEDSDKVVGNSPNLTLLMTSDDLAGRYYCKASV-MGFPEVGAEA 468 (1011)
Q Consensus 390 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n-~~~~~~s~~~ 468 (1011)
+|.+...|....+.+|+.++|.|.+.|.|.+.+.|+|++..+.......|.|.+++.+|+|.|+|.|.| .++...+..+
T Consensus 10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~ 89 (96)
T 2ens_A 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89 (96)
T ss_dssp SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCCCSEEEEESCCTTTCEEEECEECCSSCCCEECCCE
T ss_pred CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEE
Confidence 456777788888999999999999999999999999998877666788999999999999999999999 4566677778
Q ss_pred EEEEcC
Q psy17146 469 TVYLKG 474 (1011)
Q Consensus 469 ~v~v~~ 474 (1011)
.|.|..
T Consensus 90 ~v~V~~ 95 (96)
T 2ens_A 90 SISIIE 95 (96)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 887754
Done!